Psyllid ID: psy2281

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------
Protein Sequence
MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHccccccEEEEcccccccHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHcccccEEcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccHHHHHcHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHcccEEEEcHHHHHcHHHHHHHHHHHHHHHcccEEEEEEccccccccHHHcccEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHEHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mslwvdkyrpnnlqklDFHCKQANHLRNLlkegdfphllfygpsgagKKTRIMALLKELYgpviilneTDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRClciripapthEEIVSVLTNICkkegltippeFALRLAQQSDRNLRRAILMCEAskvqqypfqidqqivepdwkiYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRihkgskpiFHIEAYVASFMAMYLQFMEDTLSNLF
Flexible Loop (DISEMBL)
mslwvdkyrpnnlQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAskvqqypfqidqqivePDWKIYIRDTAkliiseqspkkLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHrihkgskpIFHIEAYVASFMAMYLQFMEDTLSNLF
Low Complexity Region (SEG)
MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF
Disordered region (IsUnstruct)
***WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFME*******
Disordered Region (DISOPRED)
MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF
Disordered Region (DISEMBL)
MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF
Disordered Region (DISPRO)
*SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	287	2.2.26 [Sep-21-2011]
Q2TBV1	356	Replication factor C subu	yes	N/A	1.0	0.806	0.481	3e-90
Q8R323	356	Replication factor C subu	yes	N/A	1.0	0.806	0.478	5e-90
P40938	356	Replication factor C subu	yes	N/A	1.0	0.806	0.478	2e-89
Q54BN3	347	Probable replication fact	yes	N/A	0.958	0.792	0.376	3e-61
Q8X082	352	Replication factor C subu	N/A	N/A	0.975	0.795	0.393	9e-59
O94697	358	Replication factor C subu	yes	N/A	0.951	0.762	0.356	9e-51
P38251	354	Replication factor C subu	yes	N/A	0.825	0.669	0.373	8e-39
Q0W037	322	Replication factor C smal	yes	N/A	0.909	0.810	0.291	1e-27
Q4JAB0	325	Replication factor C smal	yes	N/A	0.902	0.796	0.291	3e-27
Q6M044	315	Replication factor C smal	yes	N/A	0.898	0.819	0.303	3e-25

>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus GN=RFC3 PE=2 SV=1

 Score =  332 bits (850), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 171/355 (48%), Positives = 223/355 (62%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I  VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMI 355

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.
Bos taurus (taxid: 9913)

>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus GN=Rfc3 PE=2 SV=1

 Score =  330 bits (847), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 170/355 (47%), Positives = 223/355 (62%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP++L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GIGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I SVL+ +C+KEGL +P   A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Mus musculus (taxid: 10090)

>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens GN=RFC3 PE=1 SV=2

 Score =  328 bits (842), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 170/355 (47%), Positives = 222/355 (62%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I  VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Homo sapiens (taxid: 9606)

>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1

 Score =  235 bits (600), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 130/345 (37%), Positives = 188/345 (54%), Gaps = 70/345 (20%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
           LW+DKY+P +L K+D+H   + +L+N++K GDFPHLL                    YGP
Sbjct: 2   LWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYGP 61

Query: 44  --------------------------------------SGAGKKTRIMALLKELYGP--- 62
                                                 +G+  +  I  ++KE+      
Sbjct: 62  NALKLKIDHRTFKHPTSSKNIQITTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQSPPI 121

Query: 63  ---------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLC 113
                    ++ILNE D L+++AQ ALRRTMEKY T CRLILC +S ++VI  I+SRCL 
Sbjct: 122 DSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLG 181

Query: 114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ 173
           IR+PAP+ EEI  VL  +   E   +P + A+ +A+QS  NLR A+++ E+ K +QYPFQ
Sbjct: 182 IRVPAPSQEEIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ 241

Query: 174 IDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA 233
              ++   DW+ YI    K    EQSP +L  VR +LYELL H IP  ++FK LL  +  
Sbjct: 242 -STELPLLDWENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFK 300

Query: 234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
             D ++K + I  A+ +EHR   GSKPIFH+EA++A FM++Y ++
Sbjct: 301 KLDHNMKFEIIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Dictyostelium discoideum (taxid: 44689)

>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=B14D6.460 PE=3 SV=1

 Score =  227 bits (578), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 138/351 (39%), Positives = 181/351 (51%), Gaps = 71/351 (20%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           M+L VDK+RP +L  L +H + +  LR+L + GDFPHLL                    Y
Sbjct: 1   MALIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELY 60

Query: 42  GP-----------------------------------SGAGKKTRIMA--LLKELYGP-- 62
           GP                                   S  G   R++   LLKE+     
Sbjct: 61  GPGVEKIKIDARVFQTSSNRKLEFNIVASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V+++NE DHLTR+AQ ALRRTMEKY    RLIL ANS + +I  IRSRCL
Sbjct: 121 VDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+ APTH+EI  VL +  KKEG  I      R+A++S RNLRRA+LM EA   Q    
Sbjct: 181 LVRVAAPTHKEICDVLASSAKKEGWPIVKGLHQRIAEESGRNLRRALLMYEAVYAQNEKV 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
                I  PDW+  I   AK I+ E +P ++L+VR +LY+LL H IP  ++ K L   L+
Sbjct: 241 TDSTPIPPPDWEALIGQIAKEIMEEHTPARILQVRAKLYDLLTHCIPATIILKTLTFKLI 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM---AMYLQFME 280
              D  LK+  I  +A +EHRI  G+K IFH+EA+VA FM    MYL  M+
Sbjct: 301 PLIDDALKADVIYWSAFYEHRIRTGTKVIFHLEAFVAKFMRIFEMYLMSMD 351

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins proliferating cell nuclear antigen (PCNA) and activator 1.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rfc5 PE=1 SV=1

 Score =  200 bits (509), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 123/345 (35%), Positives = 169/345 (48%), Gaps = 72/345 (20%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FYGP 43
           LW+D+YRP  L  LD+H + +  L +L    +FPHLL                    YGP
Sbjct: 2   LWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYGP 61

Query: 44  -----------------------------------SGAGKKTRIM--ALLKELYGP---- 62
                                              S  G   R++   LLK++       
Sbjct: 62  GSEKLKIDQRTFLTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKDVAQSAQVD 121

Query: 63  --------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI 114
                   V+++N  D LTR+AQ ALRRTMEKY    RLIL ANS S++I  IRSR L +
Sbjct: 122 LQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSRTLMV 181

Query: 115 RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA----SKVQQY 170
           R+ APT EEI+ V++ I   +GL  P      +A   DRNLR+AIL+ E     S   + 
Sbjct: 182 RVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSPGNKQ 241

Query: 171 PFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG 230
                 Q+  PDW+ +I+     ++ EQSP ++L VR+ LY+LL H IP   + K LL  
Sbjct: 242 LIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSMLYDLLSHCIPPTTILKELLSF 301

Query: 231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY 275
            L+  D+ L    I+ AA +EHR   G+K IFH+EA+VA FM +Y
Sbjct: 302 FLSKVDTKLHPYLIQAAANYEHRTRMGNKSIFHLEAFVAYFMKVY 346

The elongation of primed DNA templates by DNA polymerase delta and epsilon requires the action of the accessory proteins PCNA and activator 1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RFC5 PE=1 SV=1

 Score =  160 bits (406), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 97/260 (37%), Positives = 146/260 (56%), Gaps = 23/260 (8%)

Query: 36  PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
           P+ L   PS  G   RI+   LLKE+                     +I+NE + LT++A
Sbjct: 91  PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150

Query: 77  QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
           Q ALRRTMEKY    RLI+  +SMS +I  I+SRCL IR PAP+  EI ++L+++   E 
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSRCLLIRCPAPSDSEISTILSDVVTNER 210

Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
           + +  +  L R+AQ S+ NLR ++LM E+  +  +   +    I++PDW I I    + I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270

Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
           + E+S   L+E R  LY+LL H IP N++ K L   LL     ++  KS  IE +++F+ 
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330

Query: 253 RIHKGSKPIFHIEAYVASFM 272
           R+  G+K IFH+E ++A  M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350

Component of ATP-dependent clamp loader (RFC and RFC-like) complexes for DNA clamps, such as the POL30/PCNA homotrimer and the checkpoint clamp DDC1:MEC3:RAD17 complex. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighboring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA. Component of the replication factor C (RFC or activator 1) complex which loads POL30/PCNA and acts during elongation of primed DNA templates by DNA polymerase delta and epsilon. RFC has an essential but redundant activity in sister chromatid cohesion establishment. Component of the RFC-like complex CTF18-RFC which is required for efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. Component of the RFC-like RAD24-RFC complex which loads the checkpoint clamp DDC1:MEC3:RAD17 complex and is involved in DNA repair pathways. Component of the RFC-like ELG1-RFC complex which appears to have a role in DNA replication, replication fork re-start, recombination and repair.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/316 (29%), Positives = 141/316 (44%), Gaps = 55/316 (17%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
           +W +KYRP  L+ +  H +    L + +K G+ PHLLF GP G GK    +AL +ELYG 
Sbjct: 6   IWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGE 65

Query: 62  --------------------------------------PVIILNETDHLTREAQQALRRT 83
                                                  +I L+E D LT +AQ ALRRT
Sbjct: 66  TWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAKFKIIFLDEADALTSDAQSALRRT 125

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME+Y  TCR I+  N  S++I  I+SRC   R       +I + +T I K EGL I  + 
Sbjct: 126 MERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGLKIEKDG 185

Query: 144 ALRLAQQSDRNLRRAI--LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPK 201
              L   +  ++RRAI  L   A+  +     +  Q         I D  KL ++ Q   
Sbjct: 186 MDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTSTAKPKEIEDMLKLALNGQ--- 242

Query: 202 KLLEVRTRLYELLV-----HSIPVNVLFKYLLE-GLLANCDSDLKSKSIEMAAMFEHRIH 255
             ++ R +L ELL+      +  ++ +++ + E GL    D D+    ++     + R+ 
Sbjct: 243 -FMDSRNKLDELLITYGLSGTDIIDQIYRSMFELGL----DEDVLVALVDRIGEADFRLT 297

Query: 256 KGSKPIFHIEAYVASF 271
           +G+     IEA +A F
Sbjct: 298 EGASERIQIEALLAHF 313

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Uncultured methanogenic archaeon RC-I (taxid: 351160)

>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rfcS PE=3 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 60/319 (18%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
           LW +KYRP +L ++    +    L+  +KE + PHLLF GP G GK T  +AL+++LYG 
Sbjct: 6   LWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYGN 65

Query: 62  --------------------------------------PVIILNETDHLTREAQQALRRT 83
                                                  VI+L+E D++T +AQQALRRT
Sbjct: 66  NYRQYFLELNASDERGIDVIRNKVKEFARTVASNNVPFKVILLDEADNMTADAQQALRRT 125

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME Y  T R IL  N +S++I  I+SR    R      E++V+ L  I K E +   P+ 
Sbjct: 126 MELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNEKVEFDPKG 185

Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY-------IRDTAKLIIS 196
              +   +  ++R+AI + +A+          +  VE  +K+        IR+   L +S
Sbjct: 186 IETIFDITQGDMRKAINVIQAASA------YGKITVETVYKVLGLAQPKEIREMLHLALS 239

Query: 197 EQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLANCDS---DLKSKSIEMAAMFEH 252
                K L+ R +L ELL+ + +    + K + + L  N  S   DLK   ++ A   E 
Sbjct: 240 ----GKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVEF 295

Query: 253 RIHKGSKPIFHIEAYVASF 271
           RI +G+     + A++A  
Sbjct: 296 RIMEGADDEIQLSAFLAKL 314

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) (taxid: 330779)

>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis (strain S2 / LL) GN=rfcS PE=3 SV=1

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 143/313 (45%), Gaps = 55/313 (17%)

Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
           WV+KYRP  L ++  H +    L N +++   PHLLF G  G GK T  +AL K+LYG  
Sbjct: 5   WVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGDT 64

Query: 63  --------------------------------------VIILNETDHLTREAQQALRRTM 84
                                                 VI L+E+D LT +AQ ALRRTM
Sbjct: 65  WRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFLDESDALTSDAQNALRRTM 124

Query: 85  EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
           EKY   CR IL  N  S++IP I+SRC   R      E++V  L +I +KE L +     
Sbjct: 125 EKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKENLNLEKGGI 184

Query: 145 LRLAQQSDRNLRRAI-LMCEASKVQQYPFQIDQQIVEPDWKIYIR---DTAKLIISEQSP 200
             +   S+ ++R+AI ++  A+ V     +I ++IV   +K+  +   D  K +      
Sbjct: 185 DAIIYVSEGDMRKAINVLQTAAAVSD---EITEEIV---YKVASKARPDEIKKMTQLALN 238

Query: 201 KKLLEVRTRLYELLVH--SIPVNVLFKYLLEGLLANCDSDLKSKS--IEMAAMFEHRIHK 256
            K +E R +LY L++       ++L +   E  + N D   K K   +E     + RI +
Sbjct: 239 GKFVEAREQLYNLMIDWGMSGEDILIQVFRE--VPNLDISEKEKVHLVEAIGECDFRIVE 296

Query: 257 GSKPIFHIEAYVA 269
           GS     + A +A
Sbjct: 297 GSNERIQLSALLA 309

Part of the RFC clamp loader complex which loads the PCNA sliding clamp onto DNA.

Methanococcus maripaludis (strain S2 / LL) (taxid: 267377)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
193659798	355	PREDICTED: replication factor C subunit	1.0	0.808	0.507	2e-96
149635763	356	PREDICTED: replication factor C subunit	1.0	0.806	0.487	1e-90
431903108	356	Replication factor C subunit 3 [Pteropus	1.0	0.806	0.481	3e-89
57526873	356	replication factor C subunit 3 [Rattus n	0.996	0.803	0.488	6e-89
291408671	356	PREDICTED: replication factor C 3 [Oryct	1.0	0.806	0.484	7e-89
444707055	356	Replication factor C subunit 3 [Tupaia c	1.0	0.806	0.481	1e-88
296203698	356	PREDICTED: replication factor C subunit	1.0	0.806	0.481	1e-88
84370117	356	replication factor C subunit 3 [Bos taur	1.0	0.806	0.481	2e-88
403286412	356	PREDICTED: replication factor C subunit	1.0	0.806	0.484	2e-88
156230598	356	Replication factor C (activator 1) 3 [Da	1.0	0.806	0.478	2e-88

>gi|193659798|ref|XP_001951302.1| PREDICTED: replication factor C subunit 3-like [Acyrthosiphon pisum]

 Score =  358 bits (918), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/355 (50%), Positives = 230/355 (64%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFY------------------- 41
           MSLW DKYRPN+LQK+D+H  QA HL NL+ +GDFPHLLFY                   
Sbjct: 1   MSLWADKYRPNSLQKVDYHQDQAQHLTNLVNQGDFPHLLFYGPNGAGKKTRILALLRQLY 60

Query: 42  GP-----------------------------------SGAGKKTRIMAL----------- 55
           GP                                   S AG   RI+ +           
Sbjct: 61  GPGVERLRTEHMNFMTPSNKKFEIMTVASNYHIEVNASDAGMYDRIVVMELIKTVAQTHQ 120

Query: 56  ---LKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
               K+ +  VI+L E D LT+EAQQALRRTMEKY+ TCR+ILCANS+ QVIPAIRSRCL
Sbjct: 121 LDSTKQRHFKVILLTEVDRLTKEAQQALRRTMEKYMATCRIILCANSIGQVIPAIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAPTHE+I  +L  ICKKEGLT+P E AL ++Q  +RNLRRAILM EASKV+QYPF
Sbjct: 181 AVRVPAPTHEDICKILKTICKKEGLTLPDELALIISQNCERNLRRAILMLEASKVKQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
            + Q +V PDW++YI DTAK I+S+Q+P KLLEVR+ LYEL+VH IP NV+FK+LL+ L+
Sbjct: 241 DVKQSVVVPDWQLYIGDTAKQILSQQTPGKLLEVRSMLYELIVHGIPTNVIFKFLLKELV 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK   +E+A+ +EH + KG+K +FH+EA+VA FM +Y +FME++L  +F
Sbjct: 301 KNCDISLKHDIVEIASFYEHSLLKGNKTMFHLEAFVAKFMLLYSKFMEESLHGIF 355

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149635763|ref|XP_001509935.1| PREDICTED: replication factor C subunit 3-like [Ornithorhynchus anatinus]

 Score =  338 bits (868), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 173/355 (48%), Positives = 224/355 (63%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L +LD+H +QAN LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPGSLARLDYHKEQANQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   LLK +     
Sbjct: 61  GTGVEKLRIEHQAITTPSKKKIEISTIASNYHLEVNPSDAGNNDRVVIQELLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSTQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I  VL+ +CKKEGL++PP  A RLA++++RNLR+A+LMCEA KVQQYPF
Sbjct: 181 AVRVPAPSVEDICHVLSTVCKKEGLSLPPALARRLAEKANRNLRKALLMCEACKVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 NNCDGQLKGEVTQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEAMM 355

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|431903108|gb|ELK09284.1| Replication factor C subunit 3 [Pteropus alecto]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 171/355 (48%), Positives = 225/355 (63%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I  VL+++CKKEGLT+PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSSVCKKEGLTLPPQLAYRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ++ E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TADQEVPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355

Source: Pteropus alecto

Species: Pteropus alecto

Genus: Pteropus

Family: Pteropodidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|57526873|ref|NP_001009629.1| replication factor C subunit 3 [Rattus norvegicus] gi|56789712|gb|AAH88281.1| Replication factor C (activator 1) 3 [Rattus norvegicus] gi|149015521|gb|EDL74921.1| replication factor C (activator 1) 3 [Rattus norvegicus]

 Score =  333 bits (854), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 173/354 (48%), Positives = 224/354 (63%), Gaps = 68/354 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP++L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            IR+PAP+ E+I SVL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AIRVPAPSIEDICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  V+ K LL  LL
Sbjct: 241 TEDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  +
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291408671|ref|XP_002720641.1| PREDICTED: replication factor C 3 [Oryctolagus cuniculus]

 Score =  333 bits (853), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 172/355 (48%), Positives = 222/355 (62%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ EEI  VLT +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEEICHVLTTVCKKEGLNLPSQLAHRLAEKSRRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|444707055|gb|ELW48364.1| Replication factor C subunit 3 [Tupaia chinensis]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/355 (48%), Positives = 224/355 (63%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP++L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPSSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GVGVEKLRIEHQSITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I  VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
            IDQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TIDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355

Source: Tupaia chinensis

Species: Tupaia chinensis

Genus: Tupaia

Family: Tupaiidae

Order: Scandentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|296203698|ref|XP_002749009.1| PREDICTED: replication factor C subunit 3 [Callithrix jacchus]

 Score =  332 bits (851), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 171/355 (48%), Positives = 224/355 (63%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I  VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
            +DQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TVDQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLLELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355

Source: Callithrix jacchus

Species: Callithrix jacchus

Genus: Callithrix

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|84370117|ref|NP_001033636.1| replication factor C subunit 3 [Bos taurus] gi|426236447|ref|XP_004012180.1| PREDICTED: replication factor C subunit 3 [Ovis aries] gi|108860923|sp|Q2TBV1.1|RFC3_BOVIN RecName: Full=Replication factor C subunit 3; AltName: Full=Activator 1 38 kDa subunit; Short=A1 38 kDa subunit; AltName: Full=Activator 1 subunit 3; AltName: Full=Replication factor C 38 kDa subunit; Short=RF-C 38 kDa subunit; Short=RFC38 gi|83638731|gb|AAI09607.1| Replication factor C (activator 1) 3, 38kDa [Bos taurus] gi|296481817|tpg|DAA23932.1| TPA: replication factor C subunit 3 [Bos taurus] gi|440909972|gb|ELR59817.1| Replication factor C subunit 3 [Bos grunniens mutus]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 171/355 (48%), Positives = 223/355 (62%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I  VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ+I E DW++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMI 355

Source: Bos taurus

Species: Bos taurus

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403286412|ref|XP_003934486.1| PREDICTED: replication factor C subunit 3-like [Saimiri boliviensis boliviensis]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 172/355 (48%), Positives = 223/355 (62%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L +LD+H +QA  LRNL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYGP-- 62
           G                                   PS AG   R++   +LK +     
Sbjct: 61  GAGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120

Query: 63  ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+PAP+ E+I  VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ+I E DW++Y+R+TA  I+SEQ+P++LLEVR RLYELL H IP  ++ K LL  LL
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLLELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
            NCD  LK +  +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  + 
Sbjct: 301 HNCDGQLKGEVAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGMM 355

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156230598|gb|AAI52282.1| Replication factor C (activator 1) 3 [Danio rerio]

 Score =  331 bits (849), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 170/355 (47%), Positives = 223/355 (62%), Gaps = 68/355 (19%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLL-------------------FY 41
           MSLWVDKYRP +L KLD+H +QAN L+NL++ GDFPHLL                    Y
Sbjct: 1   MSLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELY 60

Query: 42  G-----------------------------------PSGAGKKTRIM--ALLKELYG--- 61
           G                                   PS AG   R++   L+K +     
Sbjct: 61  GAGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQ 120

Query: 62  ---------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
                     V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS S+VI  IRSRCL
Sbjct: 121 IQSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCL 180

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF 172
            +R+P P+ EE+ SVL+ +C+KEGL +PPE A ++A++S RNLR+A+LMCEA +VQQYPF
Sbjct: 181 AVRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKALLMCEACRVQQYPF 240

Query: 173 QIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL 232
             DQ I E DW++Y+R+TA  I+S+QSP++LLEVR RLYELL H IP  V+ K L+  LL
Sbjct: 241 SPDQDIPETDWEVYLRETANAIVSQQSPQRLLEVRARLYELLTHCIPPEVIMKGLVTELL 300

Query: 233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNLF 287
           +NCD  LK++  +MAA +EHR+  G+K I+H+EA+VA FMA+Y +FMED L N  
Sbjct: 301 SNCDGHLKAEVAQMAAYYEHRLQLGNKAIYHLEAFVAKFMAIYKKFMEDGLDNFM 355

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	287
FB|FBgn0028700	395	RfC38 "Replication factor C 38	0.763	0.554	0.538	1e-88
TAIR|locus:2180315	354	EMB2775 "EMBRYO DEFECTIVE 2775	0.766	0.621	0.540	3.6e-76
DICTYBASE|DDB_G0293702	347	rfc3 "replication factor C sub	0.749	0.619	0.476	2.5e-73
UNIPROTKB|Q2TBV1	356	RFC3 "Replication factor C sub	0.780	0.629	0.602	5.9e-73
RGD|1306832	356	Rfc3 "replication factor C (ac	0.780	0.629	0.611	1.2e-72
UNIPROTKB|E2R7L0	356	RFC3 "Uncharacterized protein"	0.780	0.629	0.602	2e-72
UNIPROTKB|F1RSR4	356	RFC3 "Uncharacterized protein"	0.780	0.629	0.593	2e-72
UNIPROTKB|F1P3C0	356	RFC3 "Uncharacterized protein"	0.780	0.629	0.598	4.1e-72
UNIPROTKB|P40938	356	RFC3 "Replication factor C sub	0.780	0.629	0.598	4.1e-72
MGI|MGI:1916513	356	Rfc3 "replication factor C (ac	0.780	0.629	0.598	6.7e-72

FB|FBgn0028700 RfC38 "Replication factor C 38kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 648 (233.2 bits), Expect = 1.0e-88, Sum P(2) = 1.0e-88
 Identities = 118/219 (53%), Positives = 168/219 (76%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             VI+++E D LT++AQ ALRRTMEKY+ TCR+I+  NS S++IPAIRSRCL IR+ AP   
Sbjct:   170 VIVISEGDELTKDAQHALRRTMEKYVATCRIIISVNSTSRIIPAIRSRCLGIRVAAPNET 229

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             EIVS+L N CK+EGL +P E A R+  +S+RNLRRA+LM EA+KV + PF  +Q+I + D
Sbjct:   230 EIVSILQNTCKREGLALPVELAKRVVDKSERNLRRALLMLEAAKVAKAPFTANQEIPDLD 289

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W++++R+TA  IISEQ+P KL ++R RLYELL   +P N++F+ L+E L+ NCD  +K+K
Sbjct:   290 WQVFLRETASQIISEQTPAKLEKIRERLYELLTQGVPPNLIFRGLVEQLVNNCDMSIKAK 349

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED 281
             ++E A  +EHR+  G+K IFH+EA+VA FM +Y +F+ +
Sbjct:   350 TLEFATEYEHRMQSGAKHIFHLEAFVAQFMNIYKKFLSE 388

GO:0016887 "ATPase activity" evidence=ISS

GO:0003689 "DNA clamp loader activity" evidence=ISS

GO:0005663 "DNA replication factor C complex" evidence=ISS

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

TAIR|locus:2180315 EMB2775 "EMBRYO DEFECTIVE 2775" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
 Identities = 119/220 (54%), Positives = 156/220 (70%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             V++LNE D L+REAQ +LRRTMEKY ++CRLILC NS S+V  AI+SRCL +RI AP+ E
Sbjct:   133 VLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNVRINAPSQE 192

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             EIV VL  + KKE L +P  FA R+A++S+R+LRRAIL  E  +VQ YPF  +Q I   D
Sbjct:   193 EIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYPFTGNQVISPMD 252

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W+ Y+ + A  ++ EQSPKKL +VR ++YELLV+ IP  V+ K LL  LL   DS+LK +
Sbjct:   253 WEEYVAEIATDMMKEQSPKKLFQVRGKVYELLVNCIPPEVILKRLLHELLKKLDSELKLE 312

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDT 282
                 AA +EHR+  G K IFHIEA+VA FM++Y  F+  T
Sbjct:   313 VCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKNFLIST 352

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006260 "DNA replication" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

DICTYBASE|DDB_G0293702 rfc3 "replication factor C subunit 3" [Dictyostelium discoideum (taxid:44689)]

 Score = 519 (187.8 bits), Expect = 2.5e-73, Sum P(2) = 2.5e-73
 Identities = 103/216 (47%), Positives = 145/216 (67%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             ++ILNE D L+++AQ ALRRTMEKY T CRLILC +S ++VI  I+SRCL IR+PAP+ E
Sbjct:   131 IVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGIRVPAPSQE 190

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             EI  VL  +   E   +P + A+ +A+QS  NLR A+++ E+ K +QYPFQ   ++   D
Sbjct:   191 EIEKVLAKVATAEKFDLPSKLAVNVAKQSGGNLRYALMLLESQKAKQYPFQ-STELPLLD 249

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W+ YI    K    EQSP +L  VR +LYELL H IP  ++FK LL  +    D ++K +
Sbjct:   250 WENYISQIVKDCFEEQSPARLSIVRGKLYELLGHCIPPELIFKTLLLEIFKKLDHNMKFE 309

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQF 278
              I  A+ +EHR   GSKPIFH+EA++A FM++Y ++
Sbjct:   310 IIHWASYYEHRSQIGSKPIFHLEAFIAKFMSVYKKY 345

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003689 "DNA clamp loader activity" evidence=ISS

GO:0031391 "Elg1 RFC-like complex" evidence=ISS

GO:0031389 "Rad17 RFC-like complex" evidence=ISS

GO:0006298 "mismatch repair" evidence=ISS

GO:0006272 "leading strand elongation" evidence=ISS

GO:0005663 "DNA replication factor C complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q2TBV1 RFC3 "Replication factor C subunit 3" [Bos taurus (taxid:9913)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 135/224 (60%), Positives = 177/224 (79%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct:   131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             +I  VL+ +CKKEGL +PP+ A RLA++S RNLR+A+LMCEA +VQQYPF  DQ+I E D
Sbjct:   191 DICHVLSTVCKKEGLNLPPQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETD 250

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL NCD  LK +
Sbjct:   251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
               +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  +
Sbjct:   311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354

GO:0005634 "nucleus" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1306832 Rfc3 "replication factor C (activator 1) 3" [Rattus norvegicus (taxid:10116)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 137/224 (61%), Positives = 177/224 (79%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL IR+PAP+ E
Sbjct:   131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAIRVPAPSIE 190

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             +I SVL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF  DQ+I E D
Sbjct:   191 DICSVLSTVCKKEGLALPSKLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETD 250

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  V+ K LL  LL NCD  LK +
Sbjct:   251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEVIMKGLLSELLHNCDGQLKGE 310

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
               +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  +
Sbjct:   311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=IEA;ISO

GO:0008150 "biological_process" evidence=ND

GO:0016887 "ATPase activity" evidence=IEA;ISO

GO:0046683 "response to organophosphorus" evidence=IEA;ISO

UNIPROTKB|E2R7L0 RFC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 135/224 (60%), Positives = 176/224 (78%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct:   131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             +I  VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF  DQ+I E D
Sbjct:   191 DICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETD 250

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W++Y+R+TA  I+SEQ+P++LLEVR RLYELL H IP  ++ K LL  LL NCD  LK +
Sbjct:   251 WEVYLRETANAIVSEQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
               +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  +
Sbjct:   311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1RSR4 RFC3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 133/224 (59%), Positives = 178/224 (79%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct:   131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             +I  VL+ +CKKEGL++P + A +LA++S RNLR+A+LMCEA +VQQYPF +DQ+I E D
Sbjct:   191 DICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKALLMCEACRVQQYPFTVDQEIPETD 250

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL NCD  LK +
Sbjct:   251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
               +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  +
Sbjct:   311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354

GO:0046683 "response to organophosphorus" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P3C0 RFC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 134/224 (59%), Positives = 177/224 (79%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             V++L E D LT++AQ ALRRTMEKY+ TCRLILC NS+S++I  I+SRCL +R+PAP+ E
Sbjct:   131 VVLLTEVDKLTKDAQHALRRTMEKYMATCRLILCCNSISKIIGPIQSRCLSVRVPAPSIE 190

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             +I  VL+++CKKEGL +PPE A RLA++S RNLR+A+LMCE+ +VQQYPF  DQ I E D
Sbjct:   191 DICHVLSSVCKKEGLNLPPELAQRLAEKSGRNLRKALLMCESCRVQQYPFSADQDIPEMD 250

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W+IY+R+TA  I+S+QSP++LLEVR RLYELL H IP  ++ K LL  LL NCD  LK +
Sbjct:   251 WEIYLRETANAIVSQQSPQRLLEVRGRLYELLTHCIPPEIIMKGLLTELLNNCDGQLKGE 310

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
               +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L ++
Sbjct:   311 VAQMAAFYEHRLQLGSKAIYHLEAFVAKFMAIYKKFMEDGLDDM 354

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0046683 "response to organophosphorus" evidence=IEA

UNIPROTKB|P40938 RFC3 "Replication factor C subunit 3" [Homo sapiens (taxid:9606)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 134/224 (59%), Positives = 176/224 (78%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct:   131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             +I  VL+ +CKKEGL +P + A RLA++S RNLR+A+LMCEA +VQQYPF  DQ+I E D
Sbjct:   191 DICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETD 250

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL NCD  LK +
Sbjct:   251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
               +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  +
Sbjct:   311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS

GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006260 "DNA replication" evidence=IDA;TAS

GO:0003689 "DNA clamp loader activity" evidence=TAS

GO:0016887 "ATPase activity" evidence=IDA

GO:0046683 "response to organophosphorus" evidence=IEP

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

GO:0006200 "ATP catabolic process" evidence=IDA

MGI|MGI:1916513 Rfc3 "replication factor C (activator 1) 3" [Mus musculus (taxid:10090)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 134/224 (59%), Positives = 176/224 (78%)

Query:    63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
             V++L E D LT++AQ ALRRTMEKY++TCRLILC NS S+VIP IRSRCL +R+PAP+ E
Sbjct:   131 VVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIE 190

Query:   123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
             +I SVL+ +C+KEGL +P   A RLA++S RNLR+A+LMCEA +VQQYPF  DQ+I E D
Sbjct:   191 DICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKALLMCEACRVQQYPFTEDQEIPETD 250

Query:   183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSK 242
             W++Y+R+TA  I+S+Q+P++LLEVR RLYELL H IP  ++ K LL  LL NCD  LK +
Sbjct:   251 WEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELLHNCDGQLKGE 310

Query:   243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSNL 286
               +MAA +EHR+  GSK I+H+EA+VA FMA+Y +FMED L  +
Sbjct:   311 VAQMAAYYEHRLQLGSKAIYHLEAFVAKFMALYKKFMEDGLEGM 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005663 "DNA replication factor C complex" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006260 "DNA replication" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40938	RFC3_HUMAN	No assigned EC number	0.4788	1.0	0.8061	yes	N/A
Q5UZE5	RFCS_HALMA	No assigned EC number	0.2491	0.9303	0.8215	yes	N/A
Q8R323	RFC3_MOUSE	No assigned EC number	0.4788	1.0	0.8061	yes	N/A
O26343	RFCS_METTH	No assigned EC number	0.2821	0.9094	0.8130	yes	N/A
A9A6K6	RFCS_METM6	No assigned EC number	0.3035	0.8989	0.8190	yes	N/A
Q54BN3	RFC3_DICDI	No assigned EC number	0.3768	0.9581	0.7925	yes	N/A
P38251	RFC5_YEAST	No assigned EC number	0.3730	0.8257	0.6694	yes	N/A
A4FZ74	RFCS_METM5	No assigned EC number	0.3003	0.8989	0.8190	yes	N/A
Q2TBV1	RFC3_BOVIN	No assigned EC number	0.4816	1.0	0.8061	yes	N/A
O28219	RFCS_ARCFU	No assigned EC number	0.2683	0.9059	0.8150	yes	N/A
A6VJ61	RFCS_METM7	No assigned EC number	0.2958	0.9059	0.8253	yes	N/A
Q0W037	RFCS_UNCMA	No assigned EC number	0.2911	0.9094	0.8105	yes	N/A
A5UMF3	RFCS_METS3	No assigned EC number	0.2744	0.9163	0.8349	yes	N/A
O94697	RFC5_SCHPO	No assigned EC number	0.3565	0.9512	0.7625	yes	N/A
A3CUX9	RFCS_METMJ	No assigned EC number	0.2681	0.9198	0.8198	yes	N/A
Q6M044	RFCS_METMP	No assigned EC number	0.3035	0.8989	0.8190	yes	N/A
Q975D3	RFCS_SULTO	No assigned EC number	0.2817	0.9128	0.8012	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	287
PRK00440	319	PRK00440, rfc, replication factor C small subunit;	7e-39
PRK12402	337	PRK12402, PRK12402, replication factor C small sub	1e-34
PLN03025	319	PLN03025, PLN03025, replication factor C subunit;	7e-28
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	7e-19
PHA02544	316	PHA02544, 44, clamp loader, small subunit; Provisi	3e-17
pfam08542	89	pfam08542, Rep_fac_C, Replication factor C C-termi	1e-14
COG0470	230	COG0470, HolB, ATPase involved in DNA replication	2e-12
TIGR00678	188	TIGR00678, holB, DNA polymerase III, delta' subuni	8e-11
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	1e-10
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	1e-10
PRK14953	486	PRK14953, PRK14953, DNA polymerase III subunits ga	3e-10
PRK07940	394	PRK07940, PRK07940, DNA polymerase III subunit del	7e-10
PRK14962	472	PRK14962, PRK14962, DNA polymerase III subunits ga	4e-08
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	7e-08
pfam13177	161	pfam13177, DNA_pol3_delta2, DNA polymerase III, de	1e-07
PRK06090	319	PRK06090, PRK06090, DNA polymerase III subunit del	9e-07
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	2e-06
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	2e-06
COG2812	515	COG2812, DnaX, DNA polymerase III, gamma/tau subun	3e-06
PRK14961	363	PRK14961, PRK14961, DNA polymerase III subunits ga	8e-06
PRK04132	846	PRK04132, PRK04132, replication factor C small sub	2e-05
TIGR02397	355	TIGR02397, dnaX_nterm, DNA polymerase III, subunit	2e-05
PRK14970	367	PRK14970, PRK14970, DNA polymerase III subunits ga	3e-05
TIGR00602	637	TIGR00602, rad24, checkpoint protein rad24	8e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	1e-04
COG0593	408	COG0593, DnaA, ATPase involved in DNA replication	2e-04
PRK09112	351	PRK09112, PRK09112, DNA polymerase III subunit del	3e-04
PRK05564	313	PRK05564, PRK05564, DNA polymerase III subunit del	5e-04
PRK06305	451	PRK06305, PRK06305, DNA polymerase III subunits ga	6e-04
PRK08699	325	PRK08699, PRK08699, DNA polymerase III subunit del	7e-04
pfam03215	490	pfam03215, Rad17, Rad17 cell cycle checkpoint prot	0.001
PRK06645	507	PRK06645, PRK06645, DNA polymerase III subunits ga	0.001
PRK07399	314	PRK07399, PRK07399, DNA polymerase III subunit del	0.001
PRK14964	491	PRK14964, PRK14964, DNA polymerase III subunits ga	0.002
PRK05707	328	PRK05707, PRK05707, DNA polymerase III subunit del	0.003

>gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed

 Score =  138 bits (349), Expect = 7e-39
 Identities = 88/326 (26%), Positives = 140/326 (42%), Gaps = 75/326 (23%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG- 61
           +WV+KYRP  L ++    +    L++ +KE + PHLLF GP G GK T  +AL +ELYG 
Sbjct: 6   IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE 65

Query: 62  -------------------------------PV-------IILNETDHLTREAQQALRRT 83
                                          PV       I L+E D+LT +AQQALRRT
Sbjct: 66  DWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRT 125

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME Y    R IL  N  S++I  I+SRC   R      E +   L  I + EG+ I  + 
Sbjct: 126 MEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDA 185

Query: 144 --ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIY----------IRDTA 191
             A+    + D  +R+AI   +A+          +++ E    +Y          IR+  
Sbjct: 186 LEAIYYVSEGD--MRKAINALQAAAA------TGKEVTEE--AVYKITGTARPEEIREMI 235

Query: 192 KLIISEQSPKKLLEVRTRLYELLVH------SIPVNVLFKYLLEGLLANCDSDLKSKSIE 245
           +L ++        E R +L +L++        I +  + + +    +     +LK + I+
Sbjct: 236 ELALN----GDFTEAREKLRDLMIDYGLSGEDI-IKQIHREVWSLDI---PEELKVELID 287

Query: 246 MAAMFEHRIHKGSKPIFHIEAYVASF 271
                + RI +G+     +EA +A  
Sbjct: 288 AIGEADFRITEGANERIQLEALLAKL 313

Length = 319

>gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed

 Score =  127 bits (321), Expect = 1e-34
 Identities = 64/226 (28%), Positives = 90/226 (39%), Gaps = 70/226 (30%)

Query: 3   LWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGA------------- 46
           LW +KYRP     L+    Q      L   +   + PHLL  GP G+             
Sbjct: 4   LWTEKYRP---ALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60

Query: 47  ------------------------------------GKKTRIMAL-------LKEL--YG 61
                                                 K    +        LKE   Y 
Sbjct: 61  YGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYR 120

Query: 62  PV------IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIR 115
           P+      I+L+  + L  +AQQALRR ME+Y  TCR I+     S++IP IRSRCL + 
Sbjct: 121 PLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLF 180

Query: 116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILM 161
             APT +E+V VL +I + EG+    +    +A  +  +LR+AIL 
Sbjct: 181 FRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILT 226

Length = 337

>gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional

 Score =  109 bits (273), Expect = 7e-28
 Identities = 57/179 (31%), Positives = 84/179 (46%), Gaps = 40/179 (22%)

Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
           WV+KYRP  L  +  +    + L+ + ++G+ P+L+  GP G GK T I+AL  EL GP 
Sbjct: 3   WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPN 62

Query: 63  ---------------------------------------VIILNETDHLTREAQQALRRT 83
                                                  ++IL+E D +T  AQQALRRT
Sbjct: 63  YKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRT 122

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
           ME Y  T R  L  N+ S++I  I+SRC  +R    + +EI+  L  + + E +   PE
Sbjct: 123 MEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPE 181

Length = 319

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score = 86.0 bits (213), Expect = 7e-19
 Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 10/217 (4%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           +I L+E D LT++AQQALRRTME + +  R IL  N  S++I  I+SRC   R      E
Sbjct: 633 IIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE 692

Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
           +I   L  I + EGL +  E    +   ++ ++RRAI + +A+       +I  + V   
Sbjct: 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDD--KITDENV--- 747

Query: 183 WKIYIR---DTAKLIISEQSPKKLLEVRTRLYELLVHS--IPVNVLFKYLLEGLLANCDS 237
           + +  R   +  + ++        L+ R +L E+L+       +VL +   E      D 
Sbjct: 748 FLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHREVFNLPIDE 807

Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
             K +  +    +  R+ +G+  +  +EA +A F  M
Sbjct: 808 PKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM 844

Length = 846

>gnl|CDD|222866 PHA02544, 44, clamp loader, small subunit; Provisional

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 55/203 (27%), Positives = 88/203 (43%), Gaps = 45/203 (22%)

Query: 3   LWVDKYRPNNLQK--LDFHCKQANHLRNLLKEGDFPHLLFYGPS-GAGKKTRIMALLKEL 59
           +W  KYRP+ + +  L    K+    ++++K+G  P++L + PS G GK T   AL  E+
Sbjct: 10  MWEQKYRPSTIDECILPAADKET--FKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67

Query: 60  --------------------------------YGPVIILNETDHL-TREAQQALRRTMEK 86
                                            G VII++E D L   +AQ+ LR  ME 
Sbjct: 68  GAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA 127

Query: 87  YITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-------LTNICKKEGLTI 139
           Y   C  I+ AN+ + +I  +RSRC  I    PT EE + +          I + EG+ +
Sbjct: 128 YSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEV 187

Query: 140 PPEFALRLAQQSDRNLRRAILMC 162
             +    L +++  + RR I   
Sbjct: 188 DMKVLAALVKKNFPDFRRTINEL 210

Length = 316

>gnl|CDD|203973 pfam08542, Rep_fac_C, Replication factor C C-terminal domain

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 186 YIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSD-LKSKSI 244
            I++    I+         E R  LYELLV  I    + K L E L+     D LK + I
Sbjct: 7   DIKEILDSILKG----DFDEARETLYELLVEGISAEDILKQLHEVLIRLDIPDSLKLEII 62

Query: 245 EMAAMFEHRIHKGSKPIFHIEAYVASF 271
           +  A  EHR+  G+K I  +EA +A F
Sbjct: 63  KELAEIEHRLSDGAKEIIQLEALIAKF 89

This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A. Length = 89

>gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair]

 Score = 65.4 bits (159), Expect = 2e-12
 Identities = 53/263 (20%), Positives = 89/263 (33%), Gaps = 52/263 (19%)

Query: 26  LRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTM 84
           L   L+ G  PH LLFYGP G GK T                                  
Sbjct: 14  LVQALESGRLPHALLFYGPPGVGKTT---------------------------------- 39

Query: 85  EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
                  R IL  N  S+++P IRSRC  IR   P+  E       I   E      +  
Sbjct: 40  -APPKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEA------IAWLE-----DQGL 87

Query: 145 LRLAQQSDRNLRRAILMCEASKVQQ----YPFQIDQQI-VEPDWKIYIRDTAKLIISEQS 199
             +A  ++ + R+AI   +A    +      ++       E   ++   +  KL  ++  
Sbjct: 88  EEIAAVAEGDARKAINPLQALAALEIGEESIYEALLLALPESLAQLAALELLKLAENKFL 147

Query: 200 PKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSK 259
                     L E L+    ++ L + LL+   A    +  ++ ++  A    R+  G  
Sbjct: 148 EALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDGLL 207

Query: 260 PIFHIEAYVASFMAMYLQFMEDT 282
            +  +E  +A  + + L      
Sbjct: 208 ALIQLENLLAELLLLQLLLEGVK 230

Length = 230

>gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 29  LLKEGDFPHLLFYGPSGAG-KKTRIMALLKELYGP-------VIILNETDHLTREAQQAL 80
           L++ G+ P L    P G   K  ++  L++ L          V+I+ + + +   A  AL
Sbjct: 57  LIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANAL 116

Query: 81  RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP 140
            +T+E+       IL   S  +++P IRSRC  +  P  + E ++  L          I 
Sbjct: 117 LKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIR------QGIS 170

Query: 141 PEFALRLAQQSDRNLRRA 158
            E A  L   +  +   A
Sbjct: 171 EEAAELLLALAGGSPGAA 188

This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 61.3 bits (150), Expect = 1e-10
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 57/221 (25%)

Query: 6   DKYRPNNLQKLDFHCKQANH-------LRNLLKEGDFPHLLFYGPSGAGKKT--RIMAL- 55
           ++ RP  L   +   ++  H       LR +++ G    ++ +GP G GK T  RI+A  
Sbjct: 4   ERMRPKTLD--EVVGQE--HLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA 59

Query: 56  --------------LKEL--------------YGPVIILNETDHLTREAQQALRRTMEKY 87
                         +K+L                 ++ ++E     +  Q AL   +E  
Sbjct: 60  TDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDG 119

Query: 88  ITTCRLILCA----N-SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG---LTI 139
                + L      N S   V PA+ SR     +   + E+I  +L    + +    + +
Sbjct: 120 T----ITLIGATTENPSFE-VNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVEL 174

Query: 140 PPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVE 180
             E    LA+ ++ + RRA+ + E          I  +++E
Sbjct: 175 DDEALDALARLANGDARRALNLLEL--AALGVDSITLELLE 213

Length = 413

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 59/208 (28%), Positives = 83/208 (39%), Gaps = 45/208 (21%)

Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLR----NLLKEGDFPHLLFYGPSGAGKKTRIMALL 56
           M  WV+KYRP  L  +  + K    LR    + LK      LL YGP G GK +   AL 
Sbjct: 1   MMPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALA 60

Query: 57  KELYGPVIILNETDHLTRE-----AQQALR-----------------------------R 82
            +    VI LN +D  T +     A +A                               R
Sbjct: 61  NDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGAR 120

Query: 83  TMEKYITTCR--LILCAN---SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL 137
            + + I   +  +IL AN     S  +  +R+ CL I     +   IV VL  IC+KEG+
Sbjct: 121 AILELIKKAKQPIILTANDPYDPS--LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGI 178

Query: 138 TIPPEFALRLAQQSDRNLRRAILMCEAS 165
               E    +A++S  +LR AI   +A 
Sbjct: 179 ECDDEALKEIAERSGGDLRSAINDLQAI 206

Length = 482

>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 2/97 (2%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           V I++E   LT+EA  AL +T+E+       ILC     ++ P I SRC       PT E
Sbjct: 122 VYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKE 181

Query: 123 EIVSVLTNICKKEGLTIPPEFALR-LAQQSDRNLRRA 158
           +I   L  IC +E +    E AL  LAQ S+  +R A
Sbjct: 182 QIKEYLKRICNEEKIEY-EEKALDLLAQASEGGMRDA 217

Length = 486

>gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated

 Score = 58.8 bits (143), Expect = 7e-10
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           ++++ + D LT  A  AL + +E+       +LCA S   V+P IRSRC  + +  P+ E
Sbjct: 120 IVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVE 179

Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA 158
            +  VL    +++G  + PE A R A+ S  ++ RA
Sbjct: 180 AVAEVLV---RRDG--VDPETARRAARASQGHIGRA 210

Length = 394

>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           V I++E   LT+EA  AL +T+E+  +    +L   ++ +V P I SRC  I     + E
Sbjct: 120 VYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDE 179

Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF-QIDQQIVE 180
            I+  L  + + EG+ I  E    +A+++   LR A+ M E  +V ++   +I  + V 
Sbjct: 180 LIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLE--QVWKFSEGKITLETVH 236

Length = 472

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 50.6 bits (121), Expect = 7e-08
 Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 48/137 (35%)

Query: 26  LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY------------------------- 60
           LR  L+     +LL YGP G GK T   A+  EL+                         
Sbjct: 10  LREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69

Query: 61  ---------------GPVIILNETDHLTREAQQALRRTMEKYITT------CRLILCAN- 98
                            V+ ++E D L+R AQ AL R +E            R+I   N 
Sbjct: 70  HFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNR 129

Query: 99  -SMSQVIPAIRSRCLCI 114
             +  +  A+  R    
Sbjct: 130 PLLGDLDRALYDRLDIR 146

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 14/103 (13%)

Query: 29  LLKEGDFPHLLFYGPSGAG-KKTRIMALLKELY-----GP--VIILNETDHLTREAQQAL 80
            ++ G+ P ++   P G   K  +I  L++E       G   V I+ + + +T  A  AL
Sbjct: 62  RIENGNHPDVIIIEPEGKSIKIDQIRELIEEFSKKPFEGKKKVYIIEDAEKMTESAANAL 121

Query: 81  RRTME---KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPT 120
            +T+E   +       IL  ++ ++++P IRSRC  I     +
Sbjct: 122 LKTLEEPPENTY---FILLTSNPNKLLPTIRSRCQVINFKPLS 161

DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161

>gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated

 Score = 49.0 bits (117), Expect = 9e-07
 Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 15/168 (8%)

Query: 25  HLRNLLKEGDFPHLLFYGPSGAGKK---------TRIMALLKELYG-PVIILNETDHLTR 74
           H   L++ G+ P L    P   GK           R+     +L G  + ++   D +  
Sbjct: 63  HSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE 122

Query: 75  EAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK 134
            A  AL +T+E+    C  +L  ++  +++P I SRC    +  P+  + +  L    K 
Sbjct: 123 SASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWL----KG 178

Query: 135 EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
           +G+T+ P +AL+L   S       +      K  +   Q+   +  P 
Sbjct: 179 QGITV-PAYALKLNMGSPLKTLAMMKEGGLEKYHKLERQLVDALSGPV 225

Length = 319

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 55  LLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL 112
           LL  L G   V IL+E   +++ A  AL +T+E+       IL      ++ P I SR  
Sbjct: 109 LLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168

Query: 113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA 158
             R    T EEI   L  + + EG    PE    +A+ +D  +R A
Sbjct: 169 HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDA 214

Length = 504

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 46/176 (26%)

Query: 26  LRNLLKEGDFPHLLFYGPSGAGKKT--RIMA----------------------------- 54
           LR  ++ G    ++ +GP G GK T  R++A                             
Sbjct: 39  LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARK 98

Query: 55  LLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA----NSMSQVIPAIRSR 110
                   ++ L+E     +  Q AL   +E       +IL      N   ++ PA+ SR
Sbjct: 99  NRLLGRRTILFLDEIHRFNKAQQDALLPHVENG----TIILIGATTENPSFELNPALLSR 154

Query: 111 CLCIRIPAPTHEEIVSVLTNIC--KKEGL-----TIPPEFALRLAQQSDRNLRRAI 159
                +   + E+I  +L      ++ GL      +  E    L + S+ + RRA+
Sbjct: 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210

Length = 436

>gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

 Score = 47.8 bits (114), Expect = 3e-06
 Identities = 28/96 (29%), Positives = 47/96 (48%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           V I++E   L+++A  AL +T+E+  +  + IL      ++   I SRC          E
Sbjct: 122 VYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLE 181

Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA 158
           EI   L  I  KEG+ I  +    +A+ ++ +LR A
Sbjct: 182 EIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDA 217

Length = 515

>gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 25/101 (24%), Positives = 49/101 (48%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           V +++E   L+R +  AL +T+E+     + IL    + ++   I SRCL  ++   + E
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEE 181

Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163
           +I + L  I  KE +         +A  +  ++R A+ + E
Sbjct: 182 KIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLE 222

Length = 363

>gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 20/45 (44%), Positives = 25/45 (55%)

Query: 4  WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGK 48
          WV+KYRP  L  +         L++ +K G  PHLLF GP G GK
Sbjct: 9  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGK 53

Length = 846

>gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           V I++E   L++ A  AL +T+E+       IL      ++   I SRC          E
Sbjct: 120 VYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLE 179

Query: 123 EIVSVLTNICKKEGLTIPPEFALRL-AQQSDRNLRRAI 159
           +IV  L  I  KEG+ I  E AL L A+ +D +LR A+
Sbjct: 180 DIVERLKKILDKEGIKIEDE-ALELIARAADGSLRDAL 216

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355

>gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 49/200 (24%), Positives = 74/200 (37%), Gaps = 45/200 (22%)

Query: 7   KYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKT--RIMA--------- 54
           KYRP     +       N L N ++       LLF GP G GK T  RI+A         
Sbjct: 10  KYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYD 69

Query: 55  --------------------------LLKELYGP-------VIILNETDHLTREAQQALR 81
                                     L+ ++  P       + I++E   L+  A  A  
Sbjct: 70  DPNEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFL 129

Query: 82  RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
           +T+E+       IL      ++IP I SRC        T ++I   L  I  KEG+    
Sbjct: 130 KTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFED 189

Query: 142 EFALRLAQQSDRNLRRAILM 161
           +    +AQ++D  LR A+ +
Sbjct: 190 DALHIIAQKADGALRDALSI 209

Length = 367

>gnl|CDD|129690 TIGR00602, rad24, checkpoint protein rad24

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-----LLFYGPSGAGKKTRIMALLK 57
            WV+KY+P    +L  H K+   +   LK     +     LL  GPSG GK T I  L K
Sbjct: 73  PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSK 132

Query: 58  EL 59
           EL
Sbjct: 133 EL 134

All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 637

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCI---RIPAP 119
           + I++E   L++ A  A  +T+E+  +    IL      +++P I SRC      RI   
Sbjct: 124 IYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQV- 182

Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRL-AQQSDRNLRRAILM 161
              +IV+ L  +  KEG+T  PE AL + AQ++D  +R A+ +
Sbjct: 183 --ADIVNHLQYVASKEGITAEPE-ALNVIAQKADGGMRDALSI 222

Length = 614

>gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 7/72 (9%)

Query: 92  RLILCA----NSMSQVIPAIRSR---CLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
           +++L +      ++ +   +RSR    L + I  P  E  +++L    +  G+ IP E  
Sbjct: 210 QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVL 269

Query: 145 LRLAQQSDRNLR 156
             LA++ DRN+R
Sbjct: 270 EFLAKRLDRNVR 281

Length = 408

>gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 2/99 (2%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           ++I++  D + R A  A+ +T+E+       IL ++S  +++P IRSRC  I +     +
Sbjct: 144 IVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDD 203

Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILM 161
           E+   L+++          E    L Q+S  ++R+A+L+
Sbjct: 204 ELKKALSHL--GSSQGSDGEITEALLQRSKGSVRKALLL 240

Length = 351

>gnl|CDD|180132 PRK05564, PRK05564, DNA polymerase III subunit delta'; Validated

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 19/68 (27%), Positives = 38/68 (55%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           VII+  ++ +T +AQ A  +T+E+      +IL   ++ Q++  I+SRC   ++   + E
Sbjct: 96  VIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKE 155

Query: 123 EIVSVLTN 130
           EI   ++ 
Sbjct: 156 EIEKFISY 163

Length = 313

>gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 6/99 (6%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC---LCIRIPAP 119
           + I++E   LT+EA  +L +T+E+     +  L    + ++   I SRC      RIP  
Sbjct: 124 IYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIP-- 181

Query: 120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA 158
             E I+  L  I K+EG+    E  L +A+ +  +LR A
Sbjct: 182 -EETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDA 219

Length = 451

>gnl|CDD|181538 PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 19/67 (28%), Positives = 41/67 (61%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           VI+++  + +  +A  +L + +E+       +L +++  +V+P I+SRC  + +PAP+HE
Sbjct: 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHE 175

Query: 123 EIVSVLT 129
           E ++ L 
Sbjct: 176 EALAYLR 182

Length = 325

>gnl|CDD|217429 pfam03215, Rad17, Rad17 cell cycle checkpoint protein

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 8/69 (11%)

Query: 3  LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDF----PHLLFY--GPSGAGKKTRIMALL 56
          LW +KY+P    +L  H K+   + + LK   F      L+    GPSG GK T +  L 
Sbjct: 8  LWTEKYKPRRRDELAIHKKKIAEVDHWLK-AVFLESNKQLILLLTGPSGCGKSTTVKVLS 66

Query: 57 KELYGPVII 65
          KEL G  II
Sbjct: 67 KEL-GIEII 74

Length = 490

>gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA-IRSRCLCIRIPAPTH 121
           + I++E   L++ A  AL +T+E+       I  A +  Q IPA I SRC    +   + 
Sbjct: 131 IFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIF-ATTEVQKIPATIISRCQRYDLRRLSF 189

Query: 122 EEIVSVLTNICKKEGLTIPPEFALR-LAQQSDRNLRRAILMCE--ASKVQQYPFQIDQQI 178
           EEI  +L  I K+E L    E ALR +A +S+ + R A+ + +  AS   +    I  Q+
Sbjct: 190 EEIFKLLEYITKQENLKTDIE-ALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQV 248

Query: 179 VEPDWKIYIRDTAKLI-----ISEQSPKKLLEVRTRLY 211
           +     + + D++ +I     I  +  +K + +  +LY
Sbjct: 249 INQ--MLGLVDSSVIIEFVEYIIHRETEKAINLINKLY 284

Length = 507

>gnl|CDD|236011 PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           V+++ + + +   A  AL +T+E+      LIL A S   ++P I SRC  I     + E
Sbjct: 127 VVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAPSPESLLPTIVSRCQIIPFYRLSDE 185

Query: 123 EIVSVLTNICKKEGLTIPPEFALRLAQQS 151
           ++  VL  +  +E L I     L LAQ S
Sbjct: 186 QLEQVLKRLGDEEILNINFPELLALAQGS 214

Length = 314

>gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 24/143 (16%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           V I++E   L+  A  AL +T+E+     + IL    + ++   I SRC    +     +
Sbjct: 119 VYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTD 178

Query: 123 EIVSVLTNICKKEGLTIPPEFALRL-AQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP 181
           ++V  L +I KKE +    E +L+L A+ S  ++R A+ + E +                
Sbjct: 179 KLVEHLVDIAKKENIEHDEE-SLKLIAENSSGSMRNALFLLEQA---------------- 221

Query: 182 DWKIYIRDTAKLIISEQSPKKLL 204
              IY  +     ISE+S + LL
Sbjct: 222 --AIYSNN----KISEKSVRDLL 238

Length = 491

>gnl|CDD|180215 PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 12/124 (9%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
           V+++   + + R A  AL +++E+      L+L ++  S+++P I+SRC     P P++E
Sbjct: 109 VVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNE 168

Query: 123 EIVSVL-------TNICKKEGLTIP---PEFALRLAQQSDRNLRRAIL--MCEASKVQQY 170
           E +  L           + E LT+    P  AL+L +Q  R  R  +L  + +  K QQ 
Sbjct: 169 ESLQWLQQALPESDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQQS 228

Query: 171 PFQI 174
             Q+
Sbjct: 229 ASQL 232

Length = 328

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	287
KOG2035|consensus	351		100.0
KOG0991|consensus	333		100.0
KOG0989|consensus	346		100.0
PLN03025	319	replication factor C subunit; Provisional	100.0
PRK00440	319	rfc replication factor C small subunit; Reviewed	100.0
COG2256	436	MGS1 ATPase related to the helicase subunit of the	100.0
PRK12402	337	replication factor C small subunit 2; Reviewed	100.0
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	100.0
PHA02544	316	44 clamp loader, small subunit; Provisional	100.0
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	100.0
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	100.0
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	100.0
KOG0990|consensus	360		100.0
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	100.0
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	100.0
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	100.0
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	100.0
PRK04195	482	replication factor C large subunit; Provisional	100.0
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	100.0
KOG2028|consensus	554		100.0
PRK04132	846	replication factor C small subunit; Provisional	99.97
PRK13342	413	recombination factor protein RarA; Reviewed	99.97
PRK13341	725	recombination factor protein RarA/unknown domain f	99.97
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.95
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.94
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.94
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.93
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.92
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.92
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.91
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.91
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.9
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.9
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.9
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.9
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.89
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.89
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.89
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.89
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.88
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.88
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.88
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.88
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.88
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.87
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.87
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.86
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.86
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.86
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.86
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.85
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.84
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.84
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.84
KOG1969|consensus	877		99.83
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	99.83
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.83
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.82
PRK05917	290	DNA polymerase III subunit delta'; Validated	99.82
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.82
PRK06090	319	DNA polymerase III subunit delta'; Validated	99.82
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.82
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.82
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.81
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.81
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.81
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.81
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	99.8
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.8
PRK08084	235	DNA replication initiation factor; Provisional	99.79
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.79
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.78
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.78
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.78
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.78
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.78
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.77
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.77
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.77
PRK07132	299	DNA polymerase III subunit delta'; Validated	99.77
PRK07276	290	DNA polymerase III subunit delta'; Validated	99.77
COG1123	539	ATPase components of various ABC-type transport sy	99.77
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.77
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.77
KOG1970|consensus	634		99.77
PRK06893	229	DNA replication initiation factor; Validated	99.76
PRK06620	214	hypothetical protein; Validated	99.76
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.76
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.76
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.76
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.76
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.76
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.75
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.75
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.75
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.75
COG4181	228	Predicted ABC-type transport system involved in ly	99.75
PRK08727	233	hypothetical protein; Validated	99.75
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.75
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.75
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.75
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.75
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.74
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.74
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.74
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.74
PRK12422	445	chromosomal replication initiation protein; Provis	99.74
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.74
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.74
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.74
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.74
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.74
PRK10908	222	cell division protein FtsE; Provisional	99.74
COG0593	408	DnaA ATPase involved in DNA replication initiation	99.74
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.74
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.74
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.73
PRK14087	450	dnaA chromosomal replication initiation protein; P	99.73
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.73
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.73
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.73
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.73
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.73
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.73
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.73
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.73
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.72
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.72
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.72
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.72
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.72
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.72
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.72
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.72
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.72
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.72
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.71
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.71
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.71
PRK14700	300	recombination factor protein RarA; Provisional	99.71
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.71
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.71
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.71
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.71
PRK09087	226	hypothetical protein; Validated	99.71
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.71
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.71
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.71
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.7
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.7
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.7
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.7
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.7
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.7
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.7
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.7
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.7
COG4172	534	ABC-type uncharacterized transport system, duplica	99.7
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.7
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.69
COG1123	539	ATPase components of various ABC-type transport sy	99.69
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.69
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.69
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.69
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.69
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.69
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.68
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.68
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.68
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.68
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.68
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.68
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.68
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.68
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.68
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.68
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.68
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.68
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.68
PRK05642	234	DNA replication initiation factor; Validated	99.68
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.68
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.68
CHL00181	287	cbbX CbbX; Provisional	99.67
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.67
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.67
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.67
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.67
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.67
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.67
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.66
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.66
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.66
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.66
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.66
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	99.66
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.66
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.66
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.66
PRK05818	261	DNA polymerase III subunit delta'; Validated	99.66
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.66
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.65
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.65
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.65
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.65
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.65
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.65
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.65
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.65
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.65
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.65
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.65
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.65
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.65
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.64
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.64
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.64
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.64
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.64
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.64
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.64
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.64
COG4559	259	ABC-type hemin transport system, ATPase component	99.64
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.64
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.63
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.63
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.63
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.63
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.63
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.63
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.63
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.63
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.63
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.62
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.62
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.62
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.62
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.62
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.62
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.62
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.62
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.62
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.61
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.61
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.61
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.61
PRK10938	490	putative molybdenum transport ATP-binding protein	99.61
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.61
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.61
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.61
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	99.61
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.61
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.61
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.61
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.61
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.61
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.61
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.61
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.61
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.6
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.6
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.6
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.6
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.6
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.6
KOG0059|consensus	885		99.6
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.6
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.6
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.59
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.59
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.59
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.59
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.59
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.59
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.59
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.59
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.59
COG4172	534	ABC-type uncharacterized transport system, duplica	99.59
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.59
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.59
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.58
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.58
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.58
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.58
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.58
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.58
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.57
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.57
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.57
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.57
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.57
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.57
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.56
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.56
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.56
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.56
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.56
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.56
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.56
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.56
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.56
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.56
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.56
PLN03211	659	ABC transporter G-25; Provisional	99.56
COG4988	559	CydD ABC-type transport system involved in cytochr	99.56
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.55
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.55
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.55
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.55
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.55
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.55
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.54
PRK10938	490	putative molybdenum transport ATP-binding protein	99.54
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.53
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.53
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.53
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.53
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.53
cd03246	173	ABCC_Protease_Secretion This family represents the	99.53
KOG0058|consensus	716		99.53
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.52
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.52
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.52
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.52
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.52
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.51
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.51
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.5
KOG0057|consensus	591		99.5
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.5
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.5
KOG0733|consensus	802		99.5
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.5
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.5
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.49
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.49
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.49
PLN03232	1495	ABC transporter C family member; Provisional	99.49
KOG0730|consensus	693		99.49
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.49
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.49
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.48
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.48
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.48
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.48
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.48
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.48
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.48
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.48
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.47
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.47
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.47
PLN03130	1622	ABC transporter C family member; Provisional	99.47
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.47
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.46
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.46
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.46
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.46
KOG0055|consensus	1228		99.46
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.46
PRK13409	590	putative ATPase RIL; Provisional	99.45
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.45
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.45
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.45
KOG0738|consensus	491		99.45
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.45
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.44
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.44
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.44
PRK05907	311	hypothetical protein; Provisional	99.44
PRK07452	326	DNA polymerase III subunit delta; Validated	99.44
PRK06581	263	DNA polymerase III subunit delta'; Validated	99.44
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.44
COG4987	573	CydC ABC-type transport system involved in cytochr	99.43
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.43
CHL00195	489	ycf46 Ycf46; Provisional	99.43
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.43
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.43
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.43
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.42
CHL00176	638	ftsH cell division protein; Validated	99.42
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.42
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.42
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.41
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.41
PLN03140	1470	ABC transporter G family member; Provisional	99.41
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.4
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.4
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.4
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.4
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.39
KOG0055|consensus	1228		99.39
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.39
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.39
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.39
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.39
PRK05629	318	hypothetical protein; Validated	99.38
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.38
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.38
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.38
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.38
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.38
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.37
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.37
PRK10865	857	protein disaggregation chaperone; Provisional	99.37
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.37
PRK11147	635	ABC transporter ATPase component; Reviewed	99.37
KOG1968|consensus	871		99.36
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.36
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.36
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.35
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.35
KOG1942|consensus	456		99.35
KOG0742|consensus	630		99.35
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.34
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.34
KOG0061|consensus	613		99.34
PTZ00243	1560	ABC transporter; Provisional	99.34
PRK08485	206	DNA polymerase III subunit delta'; Validated	99.33
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.33
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.33
PRK07914	320	hypothetical protein; Reviewed	99.33
KOG0734|consensus	752		99.33
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.32
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.32
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.32
PRK06585	343	holA DNA polymerase III subunit delta; Reviewed	99.32
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.32
KOG0056|consensus	790		99.32
TIGR01128	302	holA DNA polymerase III, delta subunit. subunit ar	99.31
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.31
CHL00095	821	clpC Clp protease ATP binding subunit	99.31
PF00004	132	AAA: ATPase family associated with various cellula	99.3
KOG0733|consensus	802		99.3
CHL00095	821	clpC Clp protease ATP binding subunit	99.29
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.29
PLN03140	1470	ABC transporter G family member; Provisional	99.29
COG0488	530	Uup ATPase components of ABC transporters with dup	99.29
PRK08487	328	DNA polymerase III subunit delta; Validated	99.29
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.29
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.29
PRK05574	340	holA DNA polymerase III subunit delta; Reviewed	99.29
PRK13409	590	putative ATPase RIL; Provisional	99.28
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.28

>KOG2035|consensus

Probab=100.00  E-value=4.8e-51  Score=329.87  Aligned_cols=281  Identities=60%  Similarity=0.998  Sum_probs=270.8

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      |+|++||||++++.+.++++....++.....+++||+++|||+|+||.|.+.|+.++++|.                   
T Consensus         1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk   80 (351)
T KOG2035|consen    1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK   80 (351)
T ss_pred             CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence            4999999999999999999999999999989999999999999999999999999999875                   


Q ss_pred             -------------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE
Q psy2281          63 -------------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        63 -------------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~   93 (287)
                                                                       +|+|.|+|.++.++|.+||++||.++.++++
T Consensus        81 lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~Rl  160 (351)
T KOG2035|consen   81 LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRL  160 (351)
T ss_pred             EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceE
Confidence                                                             9999999999999999999999999999999


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ  173 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~  173 (287)
                      |+.||..+.+.+|++|||..++.+.|+++++...+.++++++|+.++.+.+..+++.|+|++|+|+..++.+....+|+.
T Consensus       161 Il~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~  240 (351)
T KOG2035|consen  161 ILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFT  240 (351)
T ss_pred             EEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cc-cCccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhh
Q psy2281         174 ID-QQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEH  252 (287)
Q Consensus       174 ~~-d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (287)
                      +. ......+|+..+.+++..++..+++..+.+++.++|+++..++||..|+.++...+..+.+...+..+++.+++|++
T Consensus       241 a~~~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~~~d~~~k~~~~~~Aa~yEh  320 (351)
T KOG2035|consen  241 ANSQVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLLKCDTQLKLEVIQHAAKYEH  320 (351)
T ss_pred             ccCCCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            77 68888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHHHHHHHHHHHhh
Q psy2281         253 RIHKGSKPIFHIEAYVASFMAMYLQFMEDT  282 (287)
Q Consensus       253 ~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~  282 (287)
                      |+..|....+|||+|+|+||.+++.|..++
T Consensus       321 Rl~lG~KaIfHLEaFVA~fM~iy~~~~~~~  350 (351)
T KOG2035|consen  321 RLRLGQKAIFHLEAFVAKFMCIYKKFLSST  350 (351)
T ss_pred             HHhhcchhhhhHHHHHHHHHHHHHHHhccC
Confidence            999999999999999999999999987654

>KOG0991|consensus

Probab=100.00  E-value=2.4e-45  Score=290.24  Aligned_cols=267  Identities=26%  Similarity=0.424  Sum_probs=230.9

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      +|+|||||..+.+++|+++.++.++.+.++|..||++|.||||+||||.+.|+++.+.++                    
T Consensus        16 ~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvV   95 (333)
T KOG0991|consen   16 PWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVV   95 (333)
T ss_pred             hHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHH
Confidence            599999999999999999999999999999999999999999999999999999998775                    


Q ss_pred             --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281          63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE  122 (287)
Q Consensus        63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~  122 (287)
                                          +|++||+|.|+..+|.+||+.|+.++..++|.++||..+++.+|++|||.+++|..+++.
T Consensus        96 Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRysklsd~  175 (333)
T KOG0991|consen   96 RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYSKLSDQ  175 (333)
T ss_pred             HHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhcccCHH
Confidence                                999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCc--cCccHHHHHHHHHHHHHhccCh
Q psy2281         123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQI--VEPDWKIYIRDTAKLIISEQSP  200 (287)
Q Consensus       123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~--~~~~~~~~i~~l~~~i~~~~~~  200 (287)
                      ++..++.++++.++++++++.++.+...+.||+|+|++.+|...-.-+..+.....  .....-..++++...+..    
T Consensus       176 qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~----  251 (333)
T KOG0991|consen  176 QILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK----  251 (333)
T ss_pred             HHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh----
Confidence            99999999999999999999999999999999999999999877654433322210  001111233444333433    


Q ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         201 KKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN--CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      ..+....+.+.+++..|++|.+|+..++. ++|+  +++..+.+.++.++..+.|+..|.+..+||..++++++..
T Consensus       252 ~~~~~A~~il~~lw~lgysp~Dii~~~FR-v~K~~~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~glla~l~~~  326 (333)
T KOG0991|consen  252 RNIDEALKILAELWKLGYSPEDIITTLFR-VVKNMDVAESLRLEFIKEIGLTHMRILEGVNSLLQLSGLLAKLCKV  326 (333)
T ss_pred             ccHHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHhccHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHHHHHHHHHHh
Confidence            36666777777888899999999998875 4453  4677788999999999999999999999999999998764

>KOG0989|consensus

Probab=100.00  E-value=4.4e-45  Score=299.79  Aligned_cols=268  Identities=28%  Similarity=0.393  Sum_probs=234.6

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      .|.+||||++|+++.|++.++..|++.+..+..||++||||||+|||+.+++++++++++                    
T Consensus        25 swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv  104 (346)
T KOG0989|consen   25 SWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV  104 (346)
T ss_pred             chHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc
Confidence            699999999999999999999999999988889999999999999999999999999874                    


Q ss_pred             ---------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceee
Q psy2281          63 ---------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIR  115 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~  115 (287)
                                                 ++++||+|.|+.++|.+|++.|+..+++++|+++||..++++.++.|||+.|+
T Consensus       105 vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kfr  184 (346)
T KOG0989|consen  105 VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFR  184 (346)
T ss_pred             hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence                                       99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc-ccc--CccCccHHHHHHHHHH
Q psy2281         116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ-IDQ--QIVEPDWKIYIRDTAK  192 (287)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~-~~d--~~~~~~~~~~i~~l~~  192 (287)
                      |++++.+++..+++.|+.++|+.+++++++.+++.|+||+|+|+..++.+....++++ .+.  ........+.+.++.+
T Consensus       185 Fk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~GvVp~~~l~~lle  264 (346)
T KOG0989|consen  185 FKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELAGVVPDEKLLDLLE  264 (346)
T ss_pred             CCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHhccCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999777655 322  1111222344555555


Q ss_pred             HHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHH
Q psy2281         193 LIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN--CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVAS  270 (287)
Q Consensus       193 ~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~  270 (287)
                      ..++.    +..++-..+.+++..|++|-.+++++++.+...  .++..+..+-..+.+.+.++..|.+.+++|-.+...
T Consensus       265 ~a~S~----d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~~  340 (346)
T KOG0989|consen  265 LALSA----DTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLEA  340 (346)
T ss_pred             HHHcc----ChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHHH
Confidence            55554    333444455668889999999999999998874  567888999999999999999999999999888876


Q ss_pred             HHHH
Q psy2281         271 FMAM  274 (287)
Q Consensus       271 ~~~~  274 (287)
                      ....
T Consensus       341 ~~ql  344 (346)
T KOG0989|consen  341 EKQL  344 (346)
T ss_pred             HHHH
Confidence            6543

>PLN03025 replication factor C subunit; Provisional

Probab=100.00  E-value=3.7e-43  Score=305.56  Aligned_cols=268  Identities=26%  Similarity=0.435  Sum_probs=234.3

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      ||++||||++|++++|+.+++..|+.++..+..||++|+||||+||||+++++++.+.+.                    
T Consensus         2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~v   81 (319)
T PLN03025          2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVV   81 (319)
T ss_pred             ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHH
Confidence            899999999999999999999999999999999999999999999999999999886321                    


Q ss_pred             --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281          63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE  122 (287)
Q Consensus        63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~  122 (287)
                                          ++++||+|.++..+|++|++.++.++.+++|+++++..+++.++++|||..++|++++.+
T Consensus        82 r~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~  161 (319)
T PLN03025         82 RNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQ  161 (319)
T ss_pred             HHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHH
Confidence                                899999999999999999999999888899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccCh
Q psy2281         123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSP  200 (287)
Q Consensus       123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~  200 (287)
                      ++..++..+++++|+.+++++++++++.++||+|++++.++......+.++..+  ........+.++++.+.+..    
T Consensus       162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~----  237 (319)
T PLN03025        162 EILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLK----  237 (319)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHc----
Confidence            999999999999999999999999999999999999999996654323222211  11233444566777666544    


Q ss_pred             hHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         201 KKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      .++......+++++..|+++..|+..++..+.+ .+++..+..++..++++++|+..|.++.+||++|+++++..
T Consensus       238 ~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~  312 (319)
T PLN03025        238 GKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLV  312 (319)
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            357777788888999999999999999776654 56888899999999999999999999999999999999886

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=100.00  E-value=2e-36  Score=264.29  Aligned_cols=269  Identities=31%  Similarity=0.511  Sum_probs=232.4

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      -+|++||||++|++++|+..+++.+..+++.+..||++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~   84 (319)
T PRK00440          5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDV   84 (319)
T ss_pred             CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHH
Confidence            4799999999999999999999999999999999999999999999999999998875211                   


Q ss_pred             --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281          63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE  122 (287)
Q Consensus        63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~  122 (287)
                                          +|++||++.++...+..|++.++.++.++.++++++...++.+++++||.++.|.+++.+
T Consensus        85 ~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~  164 (319)
T PRK00440         85 IRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKE  164 (319)
T ss_pred             HHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHH
Confidence                                799999999998888999999999888899999998888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccCh
Q psy2281         123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSP  200 (287)
Q Consensus       123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~  200 (287)
                      ++..++...+.+.|+.+++++++.+++.++||+|++++.++.+....++++..+  ..........++++.+.+...   
T Consensus       165 ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~~~~~---  241 (319)
T PRK00440        165 AVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKITGTARPEEIREMIELALNG---  241 (319)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCHHHHHHHHHHHHcC---
Confidence            999999999999999999999999999999999999999999887765544433  122233345667777766543   


Q ss_pred             hHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         201 KKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       201 ~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                       ........+.+++ ..|+++.++...++.++.. +++...+.++++.+++++++++.|.++.++||.|+++++.+
T Consensus       242 -~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~  316 (319)
T PRK00440        242 -DFTEAREKLRDLMIDYGLSGEDIIKQIHREVWSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALL  316 (319)
T ss_pred             -CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence             4555666667776 4799999999998876654 68899999999999999999999999999999999999875

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=100.00  E-value=1.1e-37  Score=265.05  Aligned_cols=246  Identities=18%  Similarity=0.257  Sum_probs=203.9

Q ss_pred             CccccccCCCCCCCccCcHHHH---HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~---~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      +|.+++.||+++++++||++.+   ..|...++.|.+++++||||||+||||++++|++.....                
T Consensus        12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~   91 (436)
T COG2256          12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLRE   91 (436)
T ss_pred             cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHH
Confidence            3788999999999999999886   689999999999999999999999999999999987654                


Q ss_pred             ---------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC----CcHHHhcccceeecCCCCHHH
Q psy2281          63 ---------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ----VIPAIRSRCLCIRIPAPTHEE  123 (287)
Q Consensus        63 ---------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~----l~~~l~sr~~~~~~~~~~~~~  123 (287)
                                     ++|+||++++++..|+.|+..+|    +..+++++...+|    +.++++|||+++.|++++.++
T Consensus        92 i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE----~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~d  167 (436)
T COG2256          92 IIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE----NGTIILIGATTENPSFELNPALLSRARVFELKPLSSED  167 (436)
T ss_pred             HHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc----CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHH
Confidence                           99999999999999999999998    4555555554444    899999999999999999999


Q ss_pred             HHHHHHHHHHH--hCCC-----CCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHh
Q psy2281         124 IVSVLTNICKK--EGLT-----IPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIIS  196 (287)
Q Consensus       124 ~~~~l~~~~~~--~~~~-----~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~  196 (287)
                      +...+.+.+..  .|+.     +++++.+.++..++||.|++++.++-+....++-.       ....+.++++...   
T Consensus       168 i~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~-------~~~~~~l~~~l~~---  237 (436)
T COG2256         168 IKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDE-------VLILELLEEILQR---  237 (436)
T ss_pred             HHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCc-------ccCHHHHHHHHhh---
Confidence            99999995443  3444     67999999999999999999999999988877532       1112333333322   


Q ss_pred             ccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHH
Q psy2281         197 EQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYL  276 (287)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~  276 (287)
                        ....+.+-.|.+|++++.              +.|++    +.+..+++.+|.+||..|++++.    |++|.+.+++
T Consensus       238 --~~~~~Dk~gD~hYdliSA--------------~hKSv----RGSD~dAALyylARmi~~GeDp~----yiARRlv~~A  293 (436)
T COG2256         238 --RSARFDKDGDAHYDLISA--------------LHKSV----RGSDPDAALYYLARMIEAGEDPL----YIARRLVRIA  293 (436)
T ss_pred             --hhhccCCCcchHHHHHHH--------------HHHhh----ccCCcCHHHHHHHHHHhcCCCHH----HHHHHHHHHH
Confidence              122344556777777664              77777    88889999999999999999988    8999999999


Q ss_pred             HHHHhhhhc
Q psy2281         277 QFMEDTLSN  285 (287)
Q Consensus       277 ~~~~~~~~~  285 (287)
                      ++|||+||.
T Consensus       294 sEDIGlAdP  302 (436)
T COG2256         294 SEDIGLADP  302 (436)
T ss_pred             HhhccCCCh
Confidence            999999974

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=100.00  E-value=6.7e-36  Score=262.87  Aligned_cols=267  Identities=30%  Similarity=0.474  Sum_probs=228.2

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------------------   61 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------------------   61 (287)
                      ||+|++||||++|++++|+..+++.+..++..+..||++|+||+|+||||+++++++.+.+                   
T Consensus         2 ~~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~   81 (337)
T PRK12402          2 APLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG   81 (337)
T ss_pred             CCchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence            6799999999999999999999999999999998888999999999999999998775410                   


Q ss_pred             ---------------------------------------------CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          62 ---------------------------------------------PVIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        62 ---------------------------------------------~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                                                                   .+|++||++.++...++.|++.++.++.+++++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~  161 (337)
T PRK12402         82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIA  161 (337)
T ss_pred             hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEE
Confidence                                                         17999999999988889999999988888889999


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d  176 (287)
                      ++....+.+++++||..+.|.+++.+++..++..+++++|+.+++++++.+++.++||+|++++.++.++...+.++..+
T Consensus       162 ~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It~~~  241 (337)
T PRK12402        162 TRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEITMEA  241 (337)
T ss_pred             eCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            88888889999999999999999999999999999999999999999999999999999999999998775444444333


Q ss_pred             Cc---cCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhh
Q psy2281         177 QI---VEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEH  252 (287)
Q Consensus       177 ~~---~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (287)
                      ..   ........++++.+.+...    +...+...+.+++ ..|+++..+...+......+++...+.+++..++++++
T Consensus       242 v~~~~~~~~~~~~i~~l~~ai~~~----~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~l~~~~~~l~~~d~  317 (337)
T PRK12402        242 AYEALGDVGTDEVIESLLDAAEAG----DFTDARKTLDDLLIDEGLSGGEVLEELLRVARSRYRGDNLARLHRLAADADA  317 (337)
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            11   1113345677777776444    4455556666665 78999999999987776667999999999999999999


Q ss_pred             HHhcCCChHHHHHHHHHHH
Q psy2281         253 RIHKGSKPIFHIEAYVASF  271 (287)
Q Consensus       253 ~l~~g~~~~~~l~~~i~~~  271 (287)
                      +++.|.++.++||.|++++
T Consensus       318 ~lk~g~~~~~~le~~i~~~  336 (337)
T PRK12402        318 RLTDGANDRIQLEALLAEL  336 (337)
T ss_pred             HHHcCCCHHHHHHHHHHhh
Confidence            9999999999999999875

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=7.5e-36  Score=270.24  Aligned_cols=269  Identities=20%  Similarity=0.251  Sum_probs=225.2

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-----------------   62 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------   62 (287)
                      |..|++||||++|++++||+.+++.|+..+.+|++|| ++|+||+|+||||+++++++.+.+.                 
T Consensus         1 ~~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~   80 (535)
T PRK08451          1 MQALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSA   80 (535)
T ss_pred             CccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence            7899999999999999999999999999999999999 7999999999999999999887420                 


Q ss_pred             ---------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          63 ---------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        63 ---------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                                                             +++|||+|.++.+++++|+++++.+++++.||++++...++
T Consensus        81 ~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL  160 (535)
T PRK08451         81 LENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL  160 (535)
T ss_pred             hhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence                                                   99999999999999999999999999999999999998899


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCccccc--CccC
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQ--QIVE  180 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d--~~~~  180 (287)
                      .++++|||..++|.+++.+++..++..+++++|+.+++++++.+++.++|++|++++.+++++.+. +.++..+  ....
T Consensus       161 ~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg  240 (535)
T PRK08451        161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLG  240 (535)
T ss_pred             chHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999999877764 2332222  1111


Q ss_pred             ccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-------CChHHHHHHHHHHHHHhhH
Q psy2281         181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN-------CDSDLKSKSIEMAAMFEHR  253 (287)
Q Consensus       181 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~  253 (287)
                      ....+.++++.+.+... +.   ..+...+.++  .|++++.++..+..++...       +....+.+.++.+++....
T Consensus       241 ~~~~~~I~~li~ai~~~-d~---~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~~~k~~  314 (535)
T PRK08451        241 LLDPSKLEDFFQAILNQ-DK---EKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILSSAKSL  314 (535)
T ss_pred             CCCHHHHHHHHHHHHhc-CH---HHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHH
Confidence            22234566666655443 33   3333333343  4788999999888777631       2344567788999999999


Q ss_pred             HhcCCChHHHHHHHHHHHHHHH
Q psy2281         254 IHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       254 l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                      +..|.++++||+.++++++...
T Consensus       315 l~~g~~~~i~l~~~~~~~~~~~  336 (535)
T PRK08451        315 LKEGADDGFVLLLMLFKMKEAL  336 (535)
T ss_pred             HHhCCCcHHHHHHHHHHHHHhc
Confidence            9999999999999999998744

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=5.5e-35  Score=259.80  Aligned_cols=268  Identities=19%  Similarity=0.217  Sum_probs=211.1

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      +|++||||++|++++|+++++..|...+..|+++| ++|+||+|+||||+++++++.+.+.                   
T Consensus         7 ~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~   86 (484)
T PRK14956          7 VLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK   86 (484)
T ss_pred             hhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHc
Confidence            69999999999999999999999999999999998 8999999999999999999887641                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++.+++++|++.++.++.++.||++++...++.+
T Consensus        87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~  166 (484)
T PRK14956         87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE  166 (484)
T ss_pred             cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCcccccC--ccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQQ--IVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d~--~~~~~  182 (287)
                      +++|||+.+.|++++.+++.+++.++++.+|+.++++++..+++.|+|++|+|++.++.++.+. +.++..+.  .....
T Consensus       167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~  246 (484)
T PRK14956        167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYH  246 (484)
T ss_pred             HHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999999998866443 22222110  01112


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----h----------CCh-----------
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----N----------CDS-----------  237 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----~----------~~~-----------  237 (287)
                      -.+.+.++.+.+..+.....   ....+..++..|.++..++.++.+++.+    +          ++.           
T Consensus       247 ~~~~~~~l~~si~~~d~~~~---al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (484)
T PRK14956        247 GIEFLTSFIKSLIDPDNHSK---SLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDFE  323 (484)
T ss_pred             CHHHHHHHHHHHHcCCcHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHHH
Confidence            33455666666554422222   2333445678899998888877777654    1          111           


Q ss_pred             ----HHHHHHHHHH----HHH-hhHHhcCCChHHHHHHHHHHHHH
Q psy2281         238 ----DLKSKSIEMA----AMF-EHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       238 ----~~~~~~~~~~----~~~-~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                          ..+.+....+    ... +.+++.+.++++.+|..+++++.
T Consensus       324 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~  368 (484)
T PRK14956        324 NVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE  368 (484)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence                1122222111    111 34567889999999999999875

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.2e-34  Score=266.60  Aligned_cols=267  Identities=19%  Similarity=0.223  Sum_probs=212.6

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++||+++++.|++++.+|+++| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~   84 (830)
T PRK07003          5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE   84 (830)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence            48999999999999999999999999999999999 7999999999999999999987531                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++...++.|++.||+++.++.||+++|...+|..
T Consensus        85 G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~  164 (830)
T PRK07003         85 GRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPV  164 (830)
T ss_pred             CCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence                                                 8999999999999999999999999999999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCccccc---CccCc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQ---QIVEP  181 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d---~~~~~  181 (287)
                      +|+|||+.|+|+.++.+++.++++++++.+|+.++++.+..+++.++|++|++++.++..+.+. +.++..+   .....
T Consensus       165 TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~  244 (830)
T PRK07003        165 TVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGAL  244 (830)
T ss_pred             hhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999999977655443 2222211   11111


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------------------------hC
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--------------------------NC  235 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------------------------~~  235 (287)
                       -.+.+.++.+.++..    +...+...+.+++..|++...++.++...+++                          .+
T Consensus       245 -d~~~i~~ll~aL~~~----d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~~~  319 (830)
T PRK07003        245 -DQTYMVRLLDALAAG----DGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAELL  319 (830)
T ss_pred             -CHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHHhC
Confidence             123455666655543    33334444445555666665555544444433                          23


Q ss_pred             ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      +.+.+...++.+......+....++++.+|..+.|++..
T Consensus       320 s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~  358 (830)
T PRK07003        320 SPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAF  358 (830)
T ss_pred             CHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence            344455666777777778888899999999998887653

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.1e-34  Score=264.33  Aligned_cols=267  Identities=17%  Similarity=0.244  Sum_probs=211.7

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|.+||||++|++++||.++++.|+..+.+|+.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus         2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~   81 (584)
T PRK14952          2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP   81 (584)
T ss_pred             cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence            57799999999999999999999999999999999 8999999999999999999887620                   


Q ss_pred             ---------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          63 ---------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        63 ---------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                                                             +++|||+|.++..++++|+++|+.++.++.||++++..+++
T Consensus        82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kl  161 (584)
T PRK14952         82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKV  161 (584)
T ss_pred             ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhh
Confidence                                                   99999999999999999999999999999999999999999


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC--Cccccc--Ccc
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY--PFQIDQ--QIV  179 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de--p~~~~d--~~~  179 (287)
                      .++++|||+.++|.+++.+++.+++.++++++|+.++++++..+++.++|++|.+++.+++++.+.+  .++..+  ...
T Consensus       162 l~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~ll  241 (584)
T PRK14952        162 LPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGLL  241 (584)
T ss_pred             HHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999887642  222211  111


Q ss_pred             CccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------------------------
Q psy2281         180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL---------------------------  232 (287)
Q Consensus       180 ~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~---------------------------  232 (287)
                      .....+.++++.+.+... +...+.   ..+.+++..|.++..++..+..++.                           
T Consensus       242 g~~~~~~i~~lv~al~~~-d~~~al---~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l  317 (584)
T PRK14952        242 GATDVALIDDAVDALAAD-DAAALF---GAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERM  317 (584)
T ss_pred             CCCCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHH
Confidence            112234455555544332 222222   2233334455555444443333321                           


Q ss_pred             ----HhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         233 ----ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       233 ----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                          ++++...+.++++.+......++.+.++++.||.++.+++.
T Consensus       318 ~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~  362 (584)
T PRK14952        318 REQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL  362 (584)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence                23455566677777777778888999999999999999874

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.1e-34  Score=261.23  Aligned_cols=267  Identities=18%  Similarity=0.218  Sum_probs=215.4

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++|++++++.|++.+..++.|| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~   84 (509)
T PRK14958          5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE   84 (509)
T ss_pred             hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence            59999999999999999999999999999999999 8999999999999999999988641                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|+++++.+++++.||++++...++.+
T Consensus        85 g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~  164 (509)
T PRK14958         85 GRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPV  164 (509)
T ss_pred             CCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchH
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCccccc--CccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQ--QIVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d--~~~~~~  182 (287)
                      +++|||..++|++++.+++..++..+++++|+.++++++..+++.++|++|.|++.+++++.+. +.++..+  ......
T Consensus       165 tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~  244 (509)
T PRK14958        165 TVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTI  244 (509)
T ss_pred             HHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999999999999998877663 2333322  112233


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----h--------------------CChH
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----N--------------------CDSD  238 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----~--------------------~~~~  238 (287)
                      ..+.++++.+.+... +..   .+...+.+++..|.++..++.++...+.+    +                    ++.+
T Consensus       245 ~~~~i~~ll~al~~~-d~~---~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (509)
T PRK14958        245 EPLLLFDILEALAAK-AGD---RLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQLAKLLDRE  320 (509)
T ss_pred             CHHHHHHHHHHHHcC-CHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHHHHHHhCCHH
Confidence            345666777666543 333   33344556678899988777766665554    1                    1112


Q ss_pred             HHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       239 ~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      .....+..+......++.+.++++.+|..+.++..
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~  355 (509)
T PRK14958        321 DVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLA  355 (509)
T ss_pred             HHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence            22223334444456778888899999998888774

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=8.8e-34  Score=265.31  Aligned_cols=266  Identities=19%  Similarity=0.236  Sum_probs=210.9

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      +|++||||++|++++|+.+++..|++.+..|+++| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~   84 (944)
T PRK14949          5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQ   84 (944)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhc
Confidence            69999999999999999999999999999999999 7999999999999999999887541                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.|+..++++|++.||.++.+++||++++...++.+
T Consensus        85 g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~  164 (944)
T PRK14949         85 GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPV  164 (944)
T ss_pred             CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchH
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc----CccCc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ----QIVEP  181 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d----~~~~~  181 (287)
                      +++|||..++|++++.+++.+++.+++..+++.++++++..++..|+|++|+|++.++.++.+.+..-..+    .....
T Consensus       165 TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~llG~i  244 (944)
T PRK14949        165 TVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTMLGSI  244 (944)
T ss_pred             HHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999987665433210000    00000


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------------------------hCC
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-------------------------NCD  236 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-------------------------~~~  236 (287)
                      . ...+..+.+.+... +...+   ...+..++..|.++..++..+..++..                         .++
T Consensus       245 D-~~~V~~llksI~~~-D~~aa---L~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~~~a~~~s  319 (944)
T PRK14949        245 D-EQHVIALLKALTDA-DIGVL---MQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIRAFAEQLS  319 (944)
T ss_pred             C-HHHHHHHHHHHHcC-CHHHH---HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHHHHHHhCC
Confidence            1 11233444443222 32222   233334456666666666554444432                         334


Q ss_pred             hHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      ...+..+++.+.+...+|+.+.++++.||.++.++..
T Consensus       320 ~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~  356 (944)
T PRK14949        320 PEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVA  356 (944)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence            4455667888888899999999999999999998865

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.2e-33  Score=253.91  Aligned_cols=267  Identities=20%  Similarity=0.221  Sum_probs=215.5

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      |.|++||||++|++++||+.+++.|++.+..|++|| ++|+||+|+||||+++++++.+.+.                  
T Consensus         1 ~~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~   80 (491)
T PRK14964          1 MNLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIK   80 (491)
T ss_pred             CChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHh
Confidence            489999999999999999999999999999999998 9999999999999999999876321                  


Q ss_pred             --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                                            +++|||+|.++..++++|+++++.+++++.||++++..+++.
T Consensus        81 ~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~  160 (491)
T PRK14964         81 NSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIP  160 (491)
T ss_pred             ccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHH
Confidence                                                  999999999999999999999999999999999999999999


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccCc--cCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQI--VEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~~--~~~  181 (287)
                      .+++|||+.+.|++++.+++..++..+++++|+.+++++++.+++.++|++|.+++.+++++.+.. .++..+..  ...
T Consensus       161 ~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg~  240 (491)
T PRK14964        161 VTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGC  240 (491)
T ss_pred             HHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999999887643 33332211  111


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----h----------------------C
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----N----------------------C  235 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----~----------------------~  235 (287)
                      ...+.++++.+.++.. +.   ......+.+++..| .+..++..+...+..    +                      +
T Consensus       241 ~~~~~If~L~~aI~~~-d~---~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (491)
T PRK14964        241 VDKHILEDLVEAILLG-DA---QSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKIG  315 (491)
T ss_pred             CCHHHHHHHHHHHHCC-CH---HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhCC
Confidence            2234577777776655 33   33333344454544 455566555443322    0                      2


Q ss_pred             ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      +.....+.++.+.+....++.+.++++.+|..+.+++.
T Consensus       316 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~  353 (491)
T PRK14964        316 STIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCY  353 (491)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Confidence            33345566777788888899999999999999999865

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.4e-33  Score=247.66  Aligned_cols=267  Identities=18%  Similarity=0.184  Sum_probs=212.1

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      +|++||||++|++++||+++++.++..+..|+.|| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~   84 (363)
T PRK14961          5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEK   84 (363)
T ss_pred             HHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence            58999999999999999999999999999999999 7999999999999999999887420                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|++.++.++.++.++++++..+.+.+
T Consensus        85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~  164 (363)
T PRK14961         85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK  164 (363)
T ss_pred             CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence                                                 8999999999999999999999999999999999988888999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~~  182 (287)
                      +++|||..++|++++.+++.+++..+++.+|+.+++++++.+++.++|++|+|++.+++++.++. .++..+  ......
T Consensus       165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l~~~  244 (363)
T PRK14961        165 TILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLGLL  244 (363)
T ss_pred             HHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC
Confidence            99999999999999999999999999999999899999999999999999999999998876542 222111  111122


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----------------------------h
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA----------------------------N  234 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~----------------------------~  234 (287)
                      ..+.++++.+.+... +   .......+.+++..|.++..++..+..++.+                            +
T Consensus       245 ~~~~i~~l~~ai~~~-~---~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (363)
T PRK14961        245 NEKQSFLLTDALLKK-D---SKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKIAQN  320 (363)
T ss_pred             CHHHHHHHHHHHHcC-C---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHHHHc
Confidence            233455555554332 2   2233333344455566666665544444332                            2


Q ss_pred             CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      ++...+..+++.+.+...+++.+.++++.+|.++.++..
T Consensus       321 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~  359 (363)
T PRK14961        321 NKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN  359 (363)
T ss_pred             CCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHh
Confidence            334455566788888888999999999999999988764

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.8e-33  Score=255.74  Aligned_cols=268  Identities=22%  Similarity=0.240  Sum_probs=227.9

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-----------------   62 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------   62 (287)
                      |+-..+||||++|++++||.+++..|+..+.++.+|| ++|+||+|+||||+++++++.+.+.                 
T Consensus         1 ~~~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~   80 (504)
T PRK14963          1 MSALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR   80 (504)
T ss_pred             CchHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence            6667799999999999999999999999999999999 6999999999999999999887420                 


Q ss_pred             --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                                            +++|||+|.++...++.|++.++.++.++.+|++++..+++.
T Consensus        81 ~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~  160 (504)
T PRK14963         81 RGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP  160 (504)
T ss_pred             cCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence                                                  899999999999999999999999988889999998888999


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCcc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPD  182 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~  182 (287)
                      ++++|||..++|.+++.+++..++.++++++|+.++++++..+++.++|++|++++.+++++..+.+++..+  ......
T Consensus       161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~  240 (504)
T PRK14963        161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLP  240 (504)
T ss_pred             hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999999999999999999887765555433  223344


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------------hCChHHHHHHHHHHH
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--------------NCDSDLKSKSIEMAA  248 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~  248 (287)
                      ..+.++++.+.+...    +.......+.+++..|.++..|+..+..++.+              ...+..+...++.++
T Consensus       241 ~~~~if~Li~al~~~----d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l~~l~  316 (504)
T PRK14963        241 PQERLRGIAAALAQG----DAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAMTALD  316 (504)
T ss_pred             cHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHHHHHH
Confidence            556788888877554    33444444556778899999999988887763              234566788999999


Q ss_pred             HHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         249 MFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       249 ~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      +.+.++..+.+ +..||..+..++.
T Consensus       317 ~~~~~~~~~~~-~~~l~~~l~~~~~  340 (504)
T PRK14963        317 EQMERFARRSD-ALSLELALLHALL  340 (504)
T ss_pred             HHHHHHHhccc-hhHHHHHHHHHHh
Confidence            99999988875 5668887877764

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.2e-33  Score=268.35  Aligned_cols=271  Identities=17%  Similarity=0.244  Sum_probs=209.9

Q ss_pred             CCc-cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281           1 MSL-WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus         1 m~~-w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      |.+ |.+||||++|++++||+.+++.|+..+.+|+++| |+|+||+||||||++++|++.+.+.                
T Consensus         1 ~~~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~   80 (824)
T PRK07764          1 MALALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA   80 (824)
T ss_pred             CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence            444 8899999999999999999999999999999999 8999999999999999999988630                


Q ss_pred             ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          63 ------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                                                                ++||||+|.|+...++.|+++|++++.++.||++++..
T Consensus        81 ~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~  160 (824)
T PRK07764         81 LAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP  160 (824)
T ss_pred             HHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence                                                      89999999999999999999999999999999999988


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC--Cccccc--
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY--PFQIDQ--  176 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de--p~~~~d--  176 (287)
                      ++|.++|+|||+.+.|..++.+++.+++.++++++|+.+++..+..+++.++|++|.+++.+++++.+.+  .++..+  
T Consensus       161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~  240 (824)
T PRK07764        161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAV  240 (824)
T ss_pred             hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999886532  222111  


Q ss_pred             CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH--------------------------
Q psy2281         177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG--------------------------  230 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~--------------------------  230 (287)
                      .+........++++++.+... +...+.   ..+..++..|.++..++..+..+                          
T Consensus       241 allg~~~~~~I~~lidAL~~~-D~a~al---~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~  316 (824)
T PRK07764        241 ALLGVTDSALIDEAVDALAAG-DGAALF---GTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQL  316 (824)
T ss_pred             HHhcCCCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHH
Confidence            111111223344444443221 222211   11222223333332222222111                          


Q ss_pred             -----HHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         231 -----LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       231 -----~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                           ..+.++...+.++++.+.+....++.+.++++.+|.++.+++...
T Consensus       317 ~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll~~  366 (824)
T PRK07764        317 DRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLLPS  366 (824)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhhc
Confidence                 122455566777888888888888899999999999999997644

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.1e-33  Score=255.42  Aligned_cols=267  Identities=20%  Similarity=0.232  Sum_probs=209.1

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG--------------------   61 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~--------------------   61 (287)
                      .|.+||||++|++++|++++++.|++.+.+|+++| ++|+||+|+||||+++++++.+.+                    
T Consensus         5 vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC   84 (700)
T PRK12323          5 VLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRAC   84 (700)
T ss_pred             hHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHH
Confidence            59999999999999999999999999999999999 799999999999999999998865                    


Q ss_pred             ---------C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          62 ---------P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        62 ---------~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                               +                                +++|||+|.++...+++|++.||+++.++.||+++|..
T Consensus        85 ~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep  164 (700)
T PRK12323         85 TEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP  164 (700)
T ss_pred             HHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence                     0                                99999999999999999999999999999999999999


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc---
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ---  176 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d---  176 (287)
                      .++.++++|||+.+.|+.++.+++.+++.+++..+|+.+++++++.+++.++|++|++++.++..+.+... ++..+   
T Consensus       165 ~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V~~  244 (700)
T PRK12323        165 QKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAVRG  244 (700)
T ss_pred             HhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998775554321 11110   


Q ss_pred             CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----------------------
Q psy2281         177 QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-----------------------  233 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-----------------------  233 (287)
                      ..... -.+.+.++.+.+... +...+..+   +-.+...|++...++.++...+.+                       
T Consensus       245 ~LG~~-d~~~i~~Ll~aL~~~-d~~~~l~l---~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~  319 (700)
T PRK12323        245 MLGAI-DQSYLVRLLDALAAE-DGAALLAI---ADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRR  319 (700)
T ss_pred             HhCCC-CHHHHHHHHHHHHcC-CHHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHHH
Confidence            00000 112344444443322 22222222   223344555554444433333322                       


Q ss_pred             ---hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         234 ---NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       234 ---~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                         .++.+.+...++.+......|....++++.+|..+.|+...
T Consensus       320 ~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~  363 (700)
T PRK12323        320 LAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAF  363 (700)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhC
Confidence               34555566677778888888999999999999999887653

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=4.3e-33  Score=251.02  Aligned_cols=271  Identities=19%  Similarity=0.228  Sum_probs=223.8

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG--------------------   61 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~--------------------   61 (287)
                      .|++||||++|++++|+..++..|+..+..|+.|| ++|+||+|+||||+++++++.+.+                    
T Consensus         6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~   85 (451)
T PRK06305          6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEIS   85 (451)
T ss_pred             HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHh
Confidence            58999999999999999999999999999999998 899999999999999999987642                    


Q ss_pred             -----C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          62 -----P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        62 -----~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                           +                                +|+|||+|.++...++.|+++++.++.++.+|++++...++.
T Consensus        86 ~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~  165 (451)
T PRK06305         86 SGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP  165 (451)
T ss_pred             cCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence                 0                                999999999999999999999999988889999998888999


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~  181 (287)
                      ++++|||..++|.+++.+++..++..+++++|+.+++++++.++.+++||+|++++.++++..+.+ .++..+  .....
T Consensus       166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l~~~  245 (451)
T PRK06305        166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKALGL  245 (451)
T ss_pred             hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999999999876522 222111  11122


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---------------HHhCChHHHHHHHHH
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL---------------LANCDSDLKSKSIEM  246 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~  246 (287)
                      ...+.++++.+.+... +   .......+.+++..|.++..++..+..++               .+.++.+.+.+++..
T Consensus       246 ~~~~~vf~L~~ai~~~-d---~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~~~L~~ii~~  321 (451)
T PRK06305        246 LSQDSLYTLDEAITTQ-N---YAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSSEQLLEIIDF  321 (451)
T ss_pred             CCHHHHHHHHHHHHcC-C---HHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCHHHHHHHHHH
Confidence            2345566776655332 3   33344445566677888877755443221               235777888999999


Q ss_pred             HHHHhhHHhcCCChHHHHHHHHHHHHHHHHH
Q psy2281         247 AAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ  277 (287)
Q Consensus       247 ~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~  277 (287)
                      +.+.+.+++.|.++.+.+|.++.++...++.
T Consensus       322 l~e~d~~lk~~~~~k~~lE~lll~l~~~~~~  352 (451)
T PRK06305        322 LGESAKHIQLTIFEKTFLETVIIHLIRIYQR  352 (451)
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999887754

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.4e-33  Score=258.79  Aligned_cols=266  Identities=20%  Similarity=0.263  Sum_probs=213.0

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      |++||||++|++++|+.++++.|...+.+|+++| |+|+||+|+||||+++++++.+.+.                    
T Consensus         6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g   85 (576)
T PRK14965          6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEG   85 (576)
T ss_pred             HHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcC
Confidence            7799999999999999999999999999999999 8999999999999999999887531                    


Q ss_pred             ------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHH
Q psy2281          63 ------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA  106 (287)
Q Consensus        63 ------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~  106 (287)
                                                          +++|||+|.++..++++|+++|+.++.++.||++++..+++.++
T Consensus        86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t  165 (576)
T PRK14965         86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT  165 (576)
T ss_pred             CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence                                                89999999999999999999999999999999999999999999


Q ss_pred             HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccC--ccCccH
Q psy2281         107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQ--IVEPDW  183 (287)
Q Consensus       107 l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~--~~~~~~  183 (287)
                      ++|||..++|++++.+++..++..+++++|+.++++++..+++.++|++|.+++.+++++.+.+ .++..+.  .....-
T Consensus       166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~llG~~~  245 (576)
T PRK14965        166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVVD  245 (576)
T ss_pred             HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999999999998877643 2222110  000111


Q ss_pred             HHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-----------------------------HHh
Q psy2281         184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL-----------------------------LAN  234 (287)
Q Consensus       184 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~-----------------------------~~~  234 (287)
                      .+.++++.+.+... +..   .+...+.++...|.++..++..+..++                             .+.
T Consensus       246 ~~~l~~ll~al~~~-d~~---~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~~~A~~  321 (576)
T PRK14965        246 RRLLLDISAAVFGR-DTR---ALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRAQAAA  321 (576)
T ss_pred             HHHHHHHHHHHHcC-CHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHHHHHc
Confidence            22355555554433 222   222223334445555544444332222                             223


Q ss_pred             CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      ++...+..+++.+.+.+..|+.+.++++.+|.++.++..
T Consensus       322 ~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~  360 (576)
T PRK14965        322 ADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMAT  360 (576)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence            555667788899999999999999999999999999876

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=5.5e-33  Score=251.50  Aligned_cols=268  Identities=19%  Similarity=0.188  Sum_probs=220.1

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      .+|++||||++|++++|+..++..|+..+..|+.+| ++|+||+|+||||+++++++.+.+.                  
T Consensus         9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C   88 (507)
T PRK06645          9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC   88 (507)
T ss_pred             cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence            479999999999999999999999999999999887 9999999999999999999987430                  


Q ss_pred             ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          63 ------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                                                                +++|||++.++..++++|+++++.++.++.||++++..
T Consensus        89 ~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~  168 (507)
T PRK06645         89 ISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEV  168 (507)
T ss_pred             HHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCCh
Confidence                                                      89999999999999999999999999999999999988


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC----Cccccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY----PFQIDQ  176 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de----p~~~~d  176 (287)
                      +++.++++|||..++|.+++.+++..++..+++++|+.+++++++.+++.++|++|.|++.+++++.+.+    .++..+
T Consensus       169 ~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It~~~  248 (507)
T PRK06645        169 QKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIISPQV  248 (507)
T ss_pred             HHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999866532    233322


Q ss_pred             --CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---------------------
Q psy2281         177 --QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA---------------------  233 (287)
Q Consensus       177 --~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~---------------------  233 (287)
                        ........+.++++.+.++..    +.......+.+++..|.++..++..+...+..                     
T Consensus       249 V~~llg~~~~~~if~L~~ai~~~----d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~  324 (507)
T PRK06645        249 INQMLGLVDSSVIIEFVEYIIHR----ETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDR  324 (507)
T ss_pred             HHHHHCCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Confidence              122334445677777776554    34444555666778888887776544433221                     


Q ss_pred             ------hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         234 ------NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       234 ------~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                            .++...+...++.+.+....++.+.++++.+|..+.++..
T Consensus       325 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~  370 (507)
T PRK06645        325 TKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIY  370 (507)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence                  1223445566777778888899999999999999988865

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.8e-33  Score=253.63  Aligned_cols=268  Identities=19%  Similarity=0.251  Sum_probs=213.2

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++|+..+++.|..++..|+.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus         4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~   83 (702)
T PRK14960          4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE   83 (702)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence            58999999999999999999999999999999998 8999999999999999999987541                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|++.++.++.++.||++++...++..
T Consensus        84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~  163 (702)
T PRK14960         84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI  163 (702)
T ss_pred             CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence                                                 8999999999999999999999999989999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCcccccC--ccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQIDQQ--IVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~~d~--~~~~~  182 (287)
                      +++|||..++|++++.+++.+++.++++++|+.++++++..+++.|+|++|.|++.+++++.++ +.++..+.  .....
T Consensus       164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lLG~~  243 (702)
T PRK14960        164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLGLI  243 (702)
T ss_pred             HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999988766553 22322221  11112


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------------------------HhC
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL---------------------------ANC  235 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~---------------------------~~~  235 (287)
                      -.+.++++.+.+... +..   .+...+.++...|.++..++..+..++.                           +.+
T Consensus       244 d~e~IfdLldAI~k~-d~~---~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la~~~  319 (702)
T PRK14960        244 DRTIIYDLILAVHQN-QRE---KVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLSKLI  319 (702)
T ss_pred             CHHHHHHHHHHHHhc-CHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHcC
Confidence            223566666665544 222   2223333444556665554443333322                           234


Q ss_pred             ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      +.......++.+......++.+.++++.+|.++.++...
T Consensus       320 s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~  358 (702)
T PRK14960        320 SAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAF  358 (702)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhC
Confidence            445556677777788888999999999999999998653

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.4e-33  Score=251.26  Aligned_cols=269  Identities=24%  Similarity=0.280  Sum_probs=222.7

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC------------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------   61 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------   61 (287)
                      |..|.+||||++|++++|+.++...|...+..|+.|| ++|+||||+||||+++++++.+.+                  
T Consensus         1 ~~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i   80 (472)
T PRK14962          1 MEALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI   80 (472)
T ss_pred             CchhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence            7889999999999999999999999999999999998 899999999999999999988653                  


Q ss_pred             ------C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          62 ------P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        62 ------~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                            .                                +++|||+|.++..+++.|+++++.++.++.++++++.+..+
T Consensus        81 ~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl  160 (472)
T PRK14962         81 DEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV  160 (472)
T ss_pred             hcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence                  0                                89999999999989999999999998888888888888889


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccC
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVE  180 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~  180 (287)
                      .++++|||..+.|.+++.+++..++..+++.+|+.++++++..+++.++||+|++++.++.+..+.+ .++..+  ....
T Consensus       161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~  240 (472)
T PRK14962        161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALG  240 (472)
T ss_pred             hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999999998776533 233222  1112


Q ss_pred             ccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC--Ch-HHHHHHHHHHHHHhhHHhcC
Q psy2281         181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANC--DS-DLKSKSIEMAAMFEHRIHKG  257 (287)
Q Consensus       181 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~l~~g  257 (287)
                      ....+.+.++.+.+...    +.......+.+++..|.+|..++..+...+...+  .+ .....+...+.+...++...
T Consensus       241 ~~~~~~i~~li~si~~~----d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~i~~~  316 (472)
T PRK14962        241 LIPIEVVRDYINAIFNG----DVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILREIKFA  316 (472)
T ss_pred             CCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhCCc
Confidence            22345677777776544    3444555566778899999999999998888744  23 45666777778888888877


Q ss_pred             CChHHHHHHHHHHHHH
Q psy2281         258 SKPIFHIEAYVASFMA  273 (287)
Q Consensus       258 ~~~~~~l~~~i~~~~~  273 (287)
                      -.+..-.+..+.+++.
T Consensus       317 e~~~~l~~~~~~~~~~  332 (472)
T PRK14962        317 EEKRLVCKLGSASIAT  332 (472)
T ss_pred             chHHHHHHHHHHHHHH
Confidence            7777666666666654

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=8.6e-33  Score=254.04  Aligned_cols=269  Identities=19%  Similarity=0.235  Sum_probs=219.7

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      ..|++||||++|++++|+..+++.|+..+..|+++| ++|+||+|+||||+++++++.+.+.                  
T Consensus         4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~   83 (709)
T PRK08691          4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID   83 (709)
T ss_pred             hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence            358999999999999999999999999999999998 8999999999999999999876421                  


Q ss_pred             --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                                            +++|||+|.++..+++.|+++|+.++.++.||++++...++.
T Consensus        84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~  163 (709)
T PRK08691         84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP  163 (709)
T ss_pred             ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence                                                  999999999999999999999999999999999999999999


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~  181 (287)
                      .+++|||..+.|++++.+++..++..+++++|+.+++.++..+++.++|++|++++.+++++.+.. .++..+  .....
T Consensus       164 ~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~  243 (709)
T PRK08691        164 VTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA  243 (709)
T ss_pred             hHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999988776532 222211  11111


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--------------------------hC
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--------------------------NC  235 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--------------------------~~  235 (287)
                      ...+.++++.+.+...    +...+...+.+++..|++...++.++..++.+                          .+
T Consensus       244 ~d~~~If~LldAL~~~----d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~  319 (709)
T PRK08691        244 VDKQYLYELLTGIINQ----DGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQTI  319 (709)
T ss_pred             cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHHcC
Confidence            2234566777766554    34444455556677788888777766665544                          22


Q ss_pred             ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      +...+...++.+......++...++++.+|..+.|+...
T Consensus       320 ~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~  358 (709)
T PRK08691        320 SGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAF  358 (709)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhc
Confidence            334455566777777778888999999999999887653

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.2e-32  Score=253.58  Aligned_cols=267  Identities=18%  Similarity=0.208  Sum_probs=215.2

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG--------------------   61 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~--------------------   61 (287)
                      .|++||||++|++++|++++++.|++.+..|+.+| ++|+||+|+||||+++++++.+.+                    
T Consensus         5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C   84 (618)
T PRK14951          5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC   84 (618)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence            49999999999999999999999999999999999 799999999999999999888753                    


Q ss_pred             ---------C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          62 ---------P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        62 ---------~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                               +                                +++|||+|.++...++.|+++++.++.++.||++++..
T Consensus        85 ~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~  164 (618)
T PRK14951         85 RDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDP  164 (618)
T ss_pred             HHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCc
Confidence                     0                                99999999999999999999999999999999999999


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--C
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--Q  177 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~  177 (287)
                      .++..+++|||..++|++++.+++..++.+++.++|+.++++++..+++.++|++|.+++.+++++.+.. .++..+  .
T Consensus       165 ~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~~V~~  244 (618)
T PRK14951        165 QKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAVRQ  244 (618)
T ss_pred             hhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987766542 122111  1


Q ss_pred             ccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH------------------------
Q psy2281         178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA------------------------  233 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~------------------------  233 (287)
                      .......+.++++.+.+...    +...+...+.++...|.++..++..+...+.+                        
T Consensus       245 ~Lg~~~~~~i~~LldaL~~~----d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (618)
T PRK14951        245 MLGSVDRSHVFRLIDALAQG----DGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVAR  320 (618)
T ss_pred             HHcCCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHHH
Confidence            11112234566666665443    33334444555667788888877766655543                        


Q ss_pred             ---hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         234 ---NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       234 ---~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                         .++.+.....+..+......+....++++.+|..+.|+..
T Consensus       321 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~  363 (618)
T PRK14951        321 LAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLA  363 (618)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence               1233344455666666777788888999999988888764

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=1.4e-32  Score=253.75  Aligned_cols=267  Identities=20%  Similarity=0.241  Sum_probs=208.5

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++|+++++..|...+..|+++| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~   84 (647)
T PRK07994          5 VLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQ   84 (647)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHc
Confidence            58999999999999999999999999999999999 7999999999999999999887541                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|++.+|+++.++.||++++..+++.+
T Consensus        85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~  164 (647)
T PRK07994         85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV  164 (647)
T ss_pred             CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccC---ccCc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQ---IVEP  181 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~---~~~~  181 (287)
                      +++|||..+.|++++.+++..++.++++.+|+.+++.++..++..|+|++|+|++.++..+...+ .++..+.   ....
T Consensus       165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v~~~lg~~  244 (647)
T PRK07994        165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAMLGTL  244 (647)
T ss_pred             HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHccC
Confidence            99999999999999999999999999999999999999999999999999999999987665532 1211110   0000


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---------------------------Hh
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL---------------------------AN  234 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~---------------------------~~  234 (287)
                      + .+.+.++.+.+... +...+   ...+..+...|.+++.++..+..++.                           ++
T Consensus       245 d-~~~~~~ll~al~~~-d~~~~---l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~la~~  319 (647)
T PRK07994        245 D-DDQALSLLEALVEG-DGERV---MALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELART  319 (647)
T ss_pred             C-HHHHHHHHHHHHcC-CHHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHHHHh
Confidence            0 11233333333222 22222   22233344555555555444433332                           23


Q ss_pred             CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      ++.+.....++.+.+...++..+.++++.+|.++.++...
T Consensus       320 ~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~  359 (647)
T PRK07994        320 LPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAF  359 (647)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhc
Confidence            4444455567778888888999999999999999887654

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=2.2e-32  Score=252.26  Aligned_cols=267  Identities=22%  Similarity=0.280  Sum_probs=214.9

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|.+||||++|++++|++++++.|++.+..|+.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~   84 (559)
T PRK05563          5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN   84 (559)
T ss_pred             HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence            38899999999999999999999999999999999 8999999999999999999887521                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|+++++.++.++.||++++...++.+
T Consensus        85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~  164 (559)
T PRK05563         85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA  164 (559)
T ss_pred             CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence                                                 9999999999999999999999999999999999998899999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~~  182 (287)
                      +++|||+.+.|.+++.+++..++..+++++|+.+++++++.+++.++|++|.|++.+++++.+.+ .++..+  ......
T Consensus       165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~vlg~~  244 (559)
T PRK05563        165 TILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEVTGSV  244 (559)
T ss_pred             HHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999998876543 222221  111112


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----------------------------HHh
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL----------------------------LAN  234 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~----------------------------~~~  234 (287)
                      ..+.++++.+.+... +...+.   +.+.+++..|.++..++..+..++                            .+.
T Consensus       245 ~~~~i~~l~~al~~~-d~~~al---~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~a~~  320 (559)
T PRK05563        245 SQEALDDLVDAIVEG-DVAKAL---KILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKELSEK  320 (559)
T ss_pred             CHHHHHHHHHHHHcc-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHHHHh
Confidence            233455665554332 332222   223334445555554444333222                            224


Q ss_pred             CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      ++...+.++++.+.+.+.+++.|.++++.+|.++.+++.
T Consensus       321 ~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~  359 (559)
T PRK05563        321 LDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE  359 (559)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence            566677889999999999999999999999999999887

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=100.00  E-value=4.5e-32  Score=236.42  Aligned_cols=265  Identities=23%  Similarity=0.323  Sum_probs=211.7

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-----------------   62 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------   62 (287)
                      |.+|++||||++|++++|++++...+..++.+|..|| ++++||+|+||||+++++++....+                 
T Consensus         8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~   87 (316)
T PHA02544          8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNR   87 (316)
T ss_pred             CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHH
Confidence            3589999999999999999999999999999999998 5569999999999999998765321                 


Q ss_pred             ---------------EEEEeCCCCC-CHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHH
Q psy2281          63 ---------------VIILNETDHL-TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVS  126 (287)
Q Consensus        63 ---------------~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~  126 (287)
                                     +++|||+|.+ ....+..++..++.++.++.++++++..+.+.++++|||..+.|+.|+.++...
T Consensus        88 l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~  167 (316)
T PHA02544         88 LTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIE  167 (316)
T ss_pred             HHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHH
Confidence                           8999999998 666778888889998888899999998889999999999999998888887764


Q ss_pred             HH-------HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccC
Q psy2281         127 VL-------TNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS  199 (287)
Q Consensus       127 ~l-------~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~  199 (287)
                      ++       ..++..+|+.++++++..+++.+.|+.|++++.++.+... ..++..+..  ......+.++.+.+ ...+
T Consensus       168 il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~~-~~i~~~~l~--~~~~~~~~~l~~~l-~~~d  243 (316)
T PHA02544        168 MMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAST-GKIDAGILS--EVTNSDIDDVVEAL-KAKD  243 (316)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHcc-CCCCHHHHH--HhhHHHHHHHHHHH-HcCC
Confidence            43       3455667899999999999999999999999999977642 222221100  11123344444443 3333


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         200 PKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                      ...+.   . +..  ..+.++..++.++...+...+....+....+.+++.+.++..|.++.++||++++++|..+
T Consensus       244 ~~~~~---~-~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~~~  313 (316)
T PHA02544        244 FKAVR---A-LAP--NYANDYASFVGKLYDELYPQVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLMLEC  313 (316)
T ss_pred             HHHHH---H-HHH--HhccCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            33333   3 222  2367889999999888888888888999999999999999999999999999999998754

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.9e-32  Score=247.34  Aligned_cols=269  Identities=19%  Similarity=0.242  Sum_probs=210.4

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      .+|++||||++|++++|+..++..|...+..|+.+| ++|+||+|+||||+++++++.+.+.                  
T Consensus         4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~   83 (546)
T PRK14957          4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN   83 (546)
T ss_pred             hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence            369999999999999999999999999999999999 8999999999999999999977530                  


Q ss_pred             --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                                            +++|||+|.++..+++.|+++++.++.++.||++++....+.
T Consensus        84 ~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil  163 (546)
T PRK14957         84 NNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP  163 (546)
T ss_pred             cCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence                                                  999999999999999999999999999999999999998999


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~  181 (287)
                      ++++|||..++|.+++.+++..++.++++++|+.+++.++..+++.++||+|++++.+++++.+.. .++..+  .....
T Consensus       164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~~l~~  243 (546)
T PRK14957        164 VTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLGI  243 (546)
T ss_pred             hhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999999999999999998776532 222111  00001


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHH--------------------------HHHHHhC
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLL--------------------------EGLLANC  235 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~--------------------------~~~~~~~  235 (287)
                      ...+.++++.+.+... +...+...   +..+...|.+...++..+.                          ..+.+++
T Consensus       244 ~~~~~v~~ll~Al~~~-d~~~~l~~---~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~a~~~  319 (546)
T PRK14957        244 IDSEEVYSIINAIIDN-DPKAILPA---IKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNILAKI  319 (546)
T ss_pred             CCHHHHHHHHHHHHcC-CHHHHHHH---HHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHhC
Confidence            1122344544443322 22222222   2223333444444443332                          1222345


Q ss_pred             ChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         236 DSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      +......+++.+.+...++..+.+.++.+|..+.|+...
T Consensus       320 s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~  358 (546)
T PRK14957        320 SIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF  358 (546)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc
Confidence            666667778888889999999999999999999888754

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2.5e-32  Score=253.62  Aligned_cols=268  Identities=19%  Similarity=0.275  Sum_probs=219.2

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++|+..+++.|...+..|+.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus         6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~   85 (614)
T PRK14971          6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN   85 (614)
T ss_pred             HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence            49999999999999999999999999999999999 8999999999999999999987520                   


Q ss_pred             --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                                            +++|||++.++..++++|+++++.+++++.||++++...++.
T Consensus        86 ~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl  165 (614)
T PRK14971         86 EQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKIL  165 (614)
T ss_pred             cCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhch
Confidence                                                  999999999999999999999999999999999999889999


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~  181 (287)
                      ++++|||.+++|.+++.+++..++..+++++|+.+++++++.+++.++||+|++++.++++..+.+ .++..+  .....
T Consensus       166 ~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~~l~~  245 (614)
T PRK14971        166 PTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIENLNI  245 (614)
T ss_pred             HHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999998765543 222211  11112


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----------------------------HH
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL----------------------------LA  233 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~----------------------------~~  233 (287)
                      ...+.++++.+.+... +   .......+.+++..|.++..++..+...+                            .+
T Consensus       246 ~~~~~iF~L~dai~~~-~---~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~~~qa~  321 (614)
T PRK14971        246 LDYDYYFRLTDALLAG-K---VSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQAQ  321 (614)
T ss_pred             CCHHHHHHHHHHHHcC-C---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHH
Confidence            2234556777666544 2   22233334556667777766554332211                            11


Q ss_pred             hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      +++...+..+++.+.+.+.+++.|.++++.+|.++.++...
T Consensus       322 ~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~  362 (614)
T PRK14971        322 KCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL  362 (614)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence            45556677889999999999999999999999999998775

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=100.00  E-value=1.4e-32  Score=246.15  Aligned_cols=269  Identities=21%  Similarity=0.264  Sum_probs=219.9

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      ..+.||||++|++++|++.++..|++.+..++++| |+|.||.|+||||++|.+++.+.+.                   
T Consensus         5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~   84 (515)
T COG2812           5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE   84 (515)
T ss_pred             HHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence            36789999999999999999999999999999999 9999999999999999999998754                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|++++|++|++..|++++|.+.+++.
T Consensus        85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~  164 (515)
T COG2812          85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN  164 (515)
T ss_pred             CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccC--ccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQ--IVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~--~~~~~  182 (287)
                      ++.|||+.+.|+.++.+++...+..++.++++.++++++..+++.+.|.+|.++..++.++.+.+ .++..+.  .....
T Consensus       165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~  244 (515)
T COG2812         165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGLT  244 (515)
T ss_pred             hhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999888764 2222110  01111


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----h-----------------------
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-----N-----------------------  234 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-----~-----------------------  234 (287)
                      -...+..+...++..    +.......+..++..|..+..++.++..++.+     .                       
T Consensus       245 ~~~~~~~~~~~i~~~----d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~  320 (515)
T COG2812         245 DIEKLLSLLEAILKG----DAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKELASQ  320 (515)
T ss_pred             CHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHHHHh
Confidence            122334444444333    44445555566778888888888777766643     1                       


Q ss_pred             CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                      ++.......+..+......++.+.++++.+|.++.++....
T Consensus       321 ~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~  361 (515)
T COG2812         321 ISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAA  361 (515)
T ss_pred             cCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhc
Confidence            11122334556666777788899999999999999987753

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3.7e-32  Score=252.16  Aligned_cols=269  Identities=22%  Similarity=0.292  Sum_probs=212.6

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++||..+++.|+..+..|+.+| |+|+||+|+||||+++++++.+.+.                   
T Consensus         7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~   86 (725)
T PRK07133          7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS   86 (725)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC
Confidence            59999999999999999999999999999999999 8999999999999999998876430                   


Q ss_pred             ----------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281          63 ----------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        63 ----------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~  108 (287)
                                                        +++|||+|.++..++++|+++++.++..+.||++++..+++.++++
T Consensus        87 ~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~  166 (725)
T PRK07133         87 LDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTIL  166 (725)
T ss_pred             CcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHH
Confidence                                              9999999999999999999999999999999999998999999999


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCccHHH
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEPDWKI  185 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~~~~~  185 (287)
                      |||+.++|.+++.+++..++..+++++|+.+++++++.++.+++|++|+|+..++++..++.. ++..+  ........+
T Consensus       167 SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~ellg~~~~e  246 (725)
T PRK07133        167 SRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFGLVSNE  246 (725)
T ss_pred             hhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCHH
Confidence            999999999999999999999999999999999999999999999999999999988765421 11110  000111112


Q ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH------------------------hCChHHHH
Q psy2281         186 YIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA------------------------NCDSDLKS  241 (287)
Q Consensus       186 ~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~------------------------~~~~~~~~  241 (287)
                      .+.++.+.+... +   ...+...+..++..|.++..++..+..++..                        .++.....
T Consensus       247 ~If~Ll~aI~~k-d---~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~~~~~s~~~l~  322 (725)
T PRK07133        247 NLINLLNLLYSK-D---IKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLEKLKIDDDFAY  322 (725)
T ss_pred             HHHHHHHHHHcC-C---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHhcCCHHHHH
Confidence            344555544332 3   3333333445556677776665544333321                        12233455


Q ss_pred             HHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         242 KSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       242 ~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                      .+++.+.+...+++.+.++++.+|.++.++....
T Consensus       323 ~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~  356 (725)
T PRK07133        323 KFIEILFDLLKDLKISDNPNDTLEILIIKLLALS  356 (725)
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC
Confidence            6678888899999999999999999999987643

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=6e-32  Score=241.32  Aligned_cols=271  Identities=16%  Similarity=0.233  Sum_probs=211.9

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC------------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------   61 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------   61 (287)
                      |+..++||||++|++++||+.+++.|+..+.+|+.|| ++|+||+|+||||+++++++.+.+                  
T Consensus         3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~   82 (397)
T PRK14955          3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG   82 (397)
T ss_pred             cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence            3457899999999999999999999999999999999 999999999999999999988743                  


Q ss_pred             ----------------------C------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281          62 ----------------------P------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLIL   95 (287)
Q Consensus        62 ----------------------~------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~   95 (287)
                                            .                        +++|||++.++...++.|+++++.++..+.+|+
T Consensus        83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il  162 (397)
T PRK14955         83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIF  162 (397)
T ss_pred             CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEE
Confidence                                  0                        899999999999899999999999998999999


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-----
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-----  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-----  170 (287)
                      +++...++.++++|||..++|.+++.+++..++..+++.+|+.+++++++.+++.++|++|.+++.++++..+.+     
T Consensus       163 ~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~  242 (397)
T PRK14955        163 ATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGE  242 (397)
T ss_pred             EeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCC
Confidence            988888999999999999999999999999999999999999999999999999999999999999999876632     


Q ss_pred             -Cccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHH----------------------
Q psy2281         171 -PFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK----------------------  225 (287)
Q Consensus       171 -p~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~----------------------  225 (287)
                       .++..+  ........+.++++.+.+... +...+.   ..+.+++..|.++..++.                      
T Consensus       243 ~~It~~~v~~~v~~~~~~~vf~l~~ai~~~-~~~~al---~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~  318 (397)
T PRK14955        243 GSIRYDKVAELLNYIDDEHFFAVTDAVADG-DAVAML---DVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVE  318 (397)
T ss_pred             CccCHHHHHHHHCCCCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence             122111  111122233445555544322 222221   112222233333333222                      


Q ss_pred             ------HHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         226 ------YLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       226 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                            ..+....++++...+.++++.+.+.+..++.+.++.+.+|.++.++....
T Consensus       319 ~~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~  374 (397)
T PRK14955        319 RPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG  374 (397)
T ss_pred             CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence                  11122234577778888999999999999999999999999999987644

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=7.8e-32  Score=248.74  Aligned_cols=267  Identities=17%  Similarity=0.221  Sum_probs=215.0

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++|++.+++.|.+.+..|+.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus        13 ~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C   92 (598)
T PRK09111         13 VLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC   92 (598)
T ss_pred             hHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH
Confidence            58999999999999999999999999999999998 9999999999999999999876410                   


Q ss_pred             ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          63 ------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                                                                +|+|||+|.++..++++|+++++.++.++.||++++..
T Consensus        93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~  172 (598)
T PRK09111         93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI  172 (598)
T ss_pred             HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence                                                      99999999999999999999999999999999999988


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--C
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--Q  177 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~  177 (287)
                      +++.++++|||+.+.|.+++.+++..++.++++++|+.++++++..+++.++|++|.+++.+++++.+.. .++..+  .
T Consensus       173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~e~V~~  252 (598)
T PRK09111        173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAVRD  252 (598)
T ss_pred             hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999988766532 222211  0


Q ss_pred             ccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------------------------
Q psy2281         178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL-------------------------  232 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-------------------------  232 (287)
                      .........++++.+.++.. +..   .....+..++..|.+|..++..+...+.                         
T Consensus       253 llg~~~~~~if~L~~ai~~g-d~~---~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~~kl  328 (598)
T PRK09111        253 MLGLADRARVIDLFEALMRG-DVA---AALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAERTRG  328 (598)
T ss_pred             HhCCCCHHHHHHHHHHHHcC-CHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHHHHH
Confidence            11112223445555555443 222   2223333445556666555554432222                         


Q ss_pred             ----HhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         233 ----ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       233 ----~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                          +.++...+.++++.+.+.+..++.+.++.+.+|.++.+++.
T Consensus       329 ~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~  373 (598)
T PRK09111        329 AEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAY  373 (598)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence                23455667788899999999999999999999999999865

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=8.9e-32  Score=246.32  Aligned_cols=268  Identities=19%  Similarity=0.257  Sum_probs=204.9

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      .+|++||||++|++++|++.++..|+..+.+|+++| ++|+||+|+||||+++++++.+.+.                  
T Consensus         4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~   83 (624)
T PRK14959          4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT   83 (624)
T ss_pred             chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence            479999999999999999999999999999999877 8999999999999999999988641                  


Q ss_pred             --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                                            +|+|||+|.++...++.|+++++.++.++.||++++...++.
T Consensus        84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll  163 (624)
T PRK14959         84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP  163 (624)
T ss_pred             cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence                                                  899999999999999999999999988889999999889999


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~  181 (287)
                      .+++|||+.++|++++.+++..++..+++.+|+.+++++++.++++++|++|+|++.+++++...+. ++..+  .....
T Consensus       164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~~lg~  243 (624)
T PRK14959        164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLGL  243 (624)
T ss_pred             HHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999987644432 11111  00000


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHH------------------------------HH
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE------------------------------GL  231 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~------------------------------~~  231 (287)
                      ...+.++++.+.+ ..++...+..+   +..++..|.++..++..+..                              .+
T Consensus       244 ~~~e~vfeLl~AL-~~~D~~aal~~---l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~~~~  319 (624)
T PRK14959        244 AGQELFLRLMEAL-AAQDCLGVANV---VRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQWLGW  319 (624)
T ss_pred             CCHHHHHHHHHHH-hcCCHHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHHHHH
Confidence            1112234444433 22222222221   22222333333332222211                              22


Q ss_pred             HHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         232 LANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      .++++...+...++.+.+...++..+.+.++.+|.++.++..
T Consensus       320 A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~  361 (624)
T PRK14959        320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAM  361 (624)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            234555566667788888888999999999999999998754

>KOG0990|consensus

Probab=100.00  E-value=2.1e-32  Score=226.34  Aligned_cols=270  Identities=26%  Similarity=0.336  Sum_probs=222.6

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      ++|+|||||..+.+++++.++...+......+..||+++|||||+|||+.+.+.+..++++                   
T Consensus        29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid  108 (360)
T KOG0990|consen   29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGID  108 (360)
T ss_pred             CCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCc
Confidence            4899999999999999999999999999999999999999999999999999999998773                   


Q ss_pred             -------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecC
Q psy2281          63 -------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP  117 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~  117 (287)
                                               .|++||+|.++.++|++|++.++.+..+.+|+.+++.+..+.++++|||+.++|.
T Consensus       109 ~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qsRctrfrf~  188 (360)
T KOG0990|consen  109 PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQSRCTRFRFA  188 (360)
T ss_pred             chHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhcccccCCCC
Confidence                                     8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC-CCccc---cc-C---ccCccHHHHHHH
Q psy2281         118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ-YPFQI---DQ-Q---IVEPDWKIYIRD  189 (287)
Q Consensus       118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d-ep~~~---~d-~---~~~~~~~~~i~~  189 (287)
                      +++......++.++++.+.....++....++.+|.||+|+|++.++.....- +....   .| .   ....... .+++
T Consensus       189 pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p~~~-dI~~  267 (360)
T KOG0990|consen  189 PLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAPQPS-DIRQ  267 (360)
T ss_pred             CCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCCChh-HHHH
Confidence            9999999999999999999988999999999999999999999999877652 21111   11 0   1111111 4555


Q ss_pred             HHHHHHhccChhHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHH
Q psy2281         190 TAKLIISEQSPKKLLEVRTRLYEL-LVHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY  267 (287)
Q Consensus       190 l~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~  267 (287)
                      +.+.+++.........+    -.+ ...|+.-..++.++...++. .+....+..++..++..++++..|+++.+|+.+.
T Consensus       268 I~~~il~~~~~~~~~~i----s~lk~~~gla~~d~i~~l~~~~~~~~~~~~~~~~I~~~l~~Ie~~ls~g~~~~~ql~ai  343 (360)
T KOG0990|consen  268 IIEKRMNGEDIELMLDD----SELKKPKGLARQDRRAELEQRFAIVISKTPVEGHILYQLADIEERLSKGCMQKEQLKAI  343 (360)
T ss_pred             HHHHHhcCchHHHHhhh----hhhhhhhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHHHHHHhcchhHHHHHHHH
Confidence            55555554332222222    112 13455667778888888876 4555778999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy2281         268 VASFMAMYL  276 (287)
Q Consensus       268 i~~~~~~~~  276 (287)
                      ++.|...++
T Consensus       344 i~~~~~~~~  352 (360)
T KOG0990|consen  344 IKNFAAELK  352 (360)
T ss_pred             HHHHHHHHH
Confidence            998876543

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=2e-31  Score=246.37  Aligned_cols=267  Identities=17%  Similarity=0.226  Sum_probs=211.4

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC--------------C------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG--------------P------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~--------------~------   62 (287)
                      .++||||++|++++||+.++..|+..+.+|+++| ++|+||+|+||||+++++++.+.+              .      
T Consensus         6 l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~   85 (620)
T PRK14954          6 IARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE   85 (620)
T ss_pred             HHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence            4689999999999999999999999999999999 999999999999999999988854              0      


Q ss_pred             --------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          63 --------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        63 --------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                                                                  +++|||+|.++..++++|+++++.++.++.||++++
T Consensus        86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~  165 (620)
T PRK14954         86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATT  165 (620)
T ss_pred             HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence                                                        999999999999999999999999999999999998


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC------CCc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ------YPF  172 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d------ep~  172 (287)
                      ...++.++++|||+.++|.+++.+++..++..+++.+|+.+++++++.+++.++|++|.+++.++++..+.      +.+
T Consensus       166 ~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~~~I  245 (620)
T PRK14954        166 ELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAEKVI  245 (620)
T ss_pred             ChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccCCcc
Confidence            88899999999999999999999999999999999999999999999999999999999999999988764      122


Q ss_pred             cccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHH---------------------
Q psy2281         173 QIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE---------------------  229 (287)
Q Consensus       173 ~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~---------------------  229 (287)
                      +..+  ........+.++++.+.+... +.   ......+.+++..|..+..++.-+..                     
T Consensus       246 t~~~V~~lv~~~~e~~iF~L~dai~~~-d~---~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~~  321 (620)
T PRK14954        246 AYQGVAELLNYIDDEQFFDVTDAIAEN-DA---VKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPE  321 (620)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHcC-CH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCCH
Confidence            2111  111112233445555544332 22   22222223333444444433331111                     


Q ss_pred             -------HHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         230 -------GLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       230 -------~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                             ...++++...+.++++.+.+.+.+++.+.++++.+|.++.++...
T Consensus       322 ~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~  373 (620)
T PRK14954        322 SVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIEL  373 (620)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Confidence                   122356667778889999999999999999999999999998763

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=4.7e-31  Score=234.30  Aligned_cols=269  Identities=20%  Similarity=0.266  Sum_probs=211.7

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC----------C--------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG----------P--------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~----------~--------   62 (287)
                      +.|++||||++|++++|++.+.+.+...++.|..|| ++|+||+|+||||+++++++.+.+          .        
T Consensus         5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~   84 (367)
T PRK14970          5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA   84 (367)
T ss_pred             HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence            479999999999999999999999999999999886 999999999999999999998643          0        


Q ss_pred             --------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeec
Q psy2281          63 --------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRI  116 (287)
Q Consensus        63 --------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~  116 (287)
                                                +|++||++.++...++.++++++.++.++.+|++++..+.+.++++|||..++|
T Consensus        85 ~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~  164 (367)
T PRK14970         85 ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDF  164 (367)
T ss_pred             ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEec
Confidence                                      999999999998889999999999888888999988888999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCccHHHHHHHHHHH
Q psy2281         117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEPDWKIYIRDTAKL  193 (287)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~~~~~~i~~l~~~  193 (287)
                      ++++.+++..++..+++++|+.+++++++.+++.++||+|++++.++++..+.. .++..+  ........+.++++.+.
T Consensus       165 ~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~l~~a  244 (367)
T PRK14970        165 KRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYINVTDL  244 (367)
T ss_pred             CCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999886532 222111  11112223445556655


Q ss_pred             HHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------HHHhCChHHHHHHHH
Q psy2281         194 IISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG----------------------------LLANCDSDLKSKSIE  245 (287)
Q Consensus       194 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------------------------~~~~~~~~~~~~~~~  245 (287)
                      +... +...+...   +.+++..|.+|..++..+..+                            ..++++...+.+++.
T Consensus       245 i~~~-~~~~a~~~---~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~~s~~~L~~~l~  320 (367)
T PRK14970        245 ILEN-KIPELLLA---FNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVSQSFLLSGID  320 (367)
T ss_pred             HHcC-CHHHHHHH---HHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5433 22222222   223334454554443322211                            112466677788899


Q ss_pred             HHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         246 MAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       246 ~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      .+.+.+..++.+.++.+.+|.++.++...
T Consensus       321 ~l~~~d~~lK~~~~~~l~lE~~l~~l~~~  349 (367)
T PRK14970        321 IANDCDLKYKLSKNQRLLVELALMQLASI  349 (367)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence            99999999999999999999999888653

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=3e-31  Score=243.87  Aligned_cols=267  Identities=19%  Similarity=0.277  Sum_probs=211.1

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++||+.++..|+..+.+|+++| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~   84 (563)
T PRK06647          5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN   84 (563)
T ss_pred             HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence            37899999999999999999999999999999999 9999999999999999999887530                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||++.++..++++|+++++.++.++.|+++++...++.+
T Consensus        85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~  164 (563)
T PRK06647         85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPA  164 (563)
T ss_pred             CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHH
Confidence                                                 9999999999999999999999999999999999988889999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~~  182 (287)
                      +++|||+.++|.+++.+++..++.++++.+|+.++++++..+++.++|++|+|++.+++++.+.. .++..+  ......
T Consensus       165 tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~llg~~  244 (563)
T PRK06647        165 TIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLT  244 (563)
T ss_pred             HHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999998766532 222211  111111


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH--------------------------HHhCC
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL--------------------------LANCD  236 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~--------------------------~~~~~  236 (287)
                      ....+.++.+.+... +...+..   .+..++..|.++..++..+..++                          .+.++
T Consensus       245 ~~~~if~LidaI~~~-D~~~al~---~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~~~s  320 (563)
T PRK06647        245 GDEFLEKLASSILNE-DAKELLC---VLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLREFD  320 (563)
T ss_pred             CHHHHHHHHHHHHcC-CHHHHHH---HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHHhCC
Confidence            123455555554333 2222222   22233344444444333222211                          12456


Q ss_pred             hHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      .....++++.+.+.+.+++.+.++++.+|.++.+++.
T Consensus       321 ~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~  357 (563)
T PRK06647        321 LSQIERAISVLLETYRDLQFSVNPRYELEINFSKILR  357 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            6677888999999999999999999999999999875

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=3.2e-31  Score=242.97  Aligned_cols=268  Identities=19%  Similarity=0.219  Sum_probs=209.5

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++||||++|++++|+.++++.|...+..++.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~   84 (527)
T PRK14969          5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS   84 (527)
T ss_pred             HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence            58999999999999999999999999999999999 7999999999999999999887541                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|+++++.++.++.||++++..+++.+
T Consensus        85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~  164 (527)
T PRK14969         85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV  164 (527)
T ss_pred             CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence                                                 9999999999999999999999999999999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-CcccccC--ccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQQ--IVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d~--~~~~~  182 (287)
                      +++|||..++|++++.+++..++.++++++|+.+++.+++.+++.++|++|++++.+++++.++. .++..+.  .....
T Consensus       165 tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~~~~~~  244 (527)
T PRK14969        165 TVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLGAI  244 (527)
T ss_pred             hHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999999999999999999998776642 2221110  00111


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--------------------------HhCC
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--------------------------ANCD  236 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--------------------------~~~~  236 (287)
                      -.+.++++.+.+... +...+.   ..+.++...|.+...++..+..++.                          ++++
T Consensus       245 ~~~~i~~ll~al~~~-~~~~~l---~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~~~s  320 (527)
T PRK14969        245 DQDYLFALLEALLAQ-DGAALL---AIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAKRLS  320 (527)
T ss_pred             CHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHHcCC
Confidence            122344554444322 222222   2223333445555444443333322                          2445


Q ss_pred             hHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         237 SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       237 ~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      .+....+++.+.+....+....++++.+|..+.|+...
T Consensus       321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~  358 (527)
T PRK14969        321 PEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAF  358 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcc
Confidence            55566677888888888899999999999999887753

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=7.8e-31  Score=237.78  Aligned_cols=267  Identities=23%  Similarity=0.281  Sum_probs=214.2

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------   61 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------   61 (287)
                      .+|++||||++|++++|+..+...|+..+..|+++| ++|+||+|+||||+++++++.+.+                   
T Consensus         4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~   83 (486)
T PRK14953          4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID   83 (486)
T ss_pred             hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence            379999999999999999999999999999999999 789999999999999999988652                   


Q ss_pred             -------------C------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          62 -------------P------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        62 -------------~------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                   .                        +++|||+|.++..++++|+++++.++.++.++++++....+.
T Consensus        84 ~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~  163 (486)
T PRK14953         84 KGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIP  163 (486)
T ss_pred             cCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHH
Confidence                         0                        999999999999999999999999998999999988888899


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~  181 (287)
                      ++++|||+.+.|++++.+++..++..+++.+|+.+++++++.+++.++|++|.+++.+++++.+.+. ++..+  .....
T Consensus       164 ~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~lg~  243 (486)
T PRK14953        164 PTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGI  243 (486)
T ss_pred             HHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999998766432 11111  11111


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH-----------------------hCChH
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA-----------------------NCDSD  238 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-----------------------~~~~~  238 (287)
                      .....++++.+.+... +...+.   ..+.++...|.++..++..+..++..                       .++..
T Consensus       244 ~~~~~vf~Li~ai~~~-d~~~al---~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~~~~~~~  319 (486)
T PRK14953        244 VSQESVRKFLNLLLES-DVDEAI---KFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRKLEKPLE  319 (486)
T ss_pred             CCHHHHHHHHHHHHCC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHHhcCCHH
Confidence            2223466666665443 333333   33445567788887777665555433                       11123


Q ss_pred             HHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       239 ~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      .+..+++.+.+...+++. .++++.+|.++.+++.
T Consensus       320 ~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~  353 (486)
T PRK14953        320 ALLYLEDVINKAFSEART-RDPLRAYELAILKLLY  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHh
Confidence            344567788888889999 9999999999988864

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=100.00  E-value=1.1e-30  Score=231.42  Aligned_cols=266  Identities=22%  Similarity=0.297  Sum_probs=206.4

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------   61 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------   61 (287)
                      ++|++||||++|++++|+..+++.+...+..|..|| ++|+||+|+||||+++++++.+.+                   
T Consensus         2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~   81 (355)
T TIGR02397         2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN   81 (355)
T ss_pred             ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence            589999999999999999999999999999999998 899999999999999999887631                   


Q ss_pred             ----------------C---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          62 ----------------P---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        62 ----------------~---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                      .                     +|+|||+|.++...++.+++.++.++.++.+|++++..+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~  161 (355)
T TIGR02397        82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIP  161 (355)
T ss_pred             cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHH
Confidence                            0                     899999999999889999999999888888889888888888


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~  181 (287)
                      ++++|||..+.|++++.+++..++..++++.|+.+++++.+.+++.++|++|++++.++++..+... ++..+  .....
T Consensus       162 ~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~~  241 (355)
T TIGR02397       162 ATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLGL  241 (355)
T ss_pred             HHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999999999999999999999998876432 22111  01111


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHH---------------------------HHHHh
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLE---------------------------GLLAN  234 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~---------------------------~~~~~  234 (287)
                      .....++++.+.+... +...+.   ..+..+...|.++..++..+..                           ...+.
T Consensus       242 ~~~~~i~~l~~ai~~~-~~~~a~---~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a~~  317 (355)
T TIGR02397       242 VDDEKLIELLEAILNK-DTAEAL---KILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELALK  317 (355)
T ss_pred             CCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHHHh
Confidence            1223445555554332 222222   2222233334444333322211                           12224


Q ss_pred             CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHH
Q psy2281         235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF  271 (287)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~  271 (287)
                      ++.+....+++.+.+.+.+++.+.++.+.+|.++.++
T Consensus       318 ~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~  354 (355)
T TIGR02397       318 LSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRL  354 (355)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHh
Confidence            5666677888999999999999999999999999876

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.2e-30  Score=242.50  Aligned_cols=268  Identities=23%  Similarity=0.284  Sum_probs=210.6

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      +|.+||||+.|++++|+..++..|...+..|+.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i   84 (620)
T PRK14948          5 PLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAI   84 (620)
T ss_pred             hHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHH
Confidence            79999999999999999999999999999998866 9999999999999999999987540                   


Q ss_pred             ---------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          63 ---------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        63 ---------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                                                             +++|||+|.++..++++|+++++.++.++.||++++..+.+
T Consensus        85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~l  164 (620)
T PRK14948         85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRV  164 (620)
T ss_pred             hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhh
Confidence                                                   99999999999999999999999999999999999988899


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccC--ccCc
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ--IVEP  181 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~--~~~~  181 (287)
                      .++++|||..++|.+++.+++..++.++++++|+.++++++..+++.++|++|+|++.++++.++.+.++..+.  ....
T Consensus       165 lpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~~lvg~  244 (620)
T PRK14948        165 LPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVWDLLGA  244 (620)
T ss_pred             hHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999998877654433221  1111


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHH-----------------------------HHHHHHH
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK-----------------------------YLLEGLL  232 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-----------------------------~~~~~~~  232 (287)
                      ...+.++++.+.+... +...+...++.   ++..|..+..++.                             ..+....
T Consensus       245 ~~e~~i~~Ll~ai~~~-d~~~al~~~~~---Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~~A  320 (620)
T PRK14948        245 VPEQDLLNLLKALASN-DPESLLDSCRQ---LLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCKLA  320 (620)
T ss_pred             CCHHHHHHHHHHHHCC-CHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHHHH
Confidence            1123344454444322 33322222221   2222333322222                             1122223


Q ss_pred             HhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         233 ANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      +.++...+..+++.+.+.+..++.+.++++.+|.++.++...
T Consensus       321 ~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~  362 (620)
T PRK14948        321 KQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPS  362 (620)
T ss_pred             hhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhcc
Confidence            356667777888999999999999999999999999988764

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=100.00  E-value=1.3e-30  Score=242.69  Aligned_cols=267  Identities=20%  Similarity=0.268  Sum_probs=211.4

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|.+||||++|++++|+..++..|+..+.+|+.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~   84 (585)
T PRK14950          5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA   84 (585)
T ss_pred             HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence            48899999999999999999999999999999988 7999999999999999999876310                   


Q ss_pred             --------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          63 --------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                                                            +|+|||+|.++...++.|+++++.++.++.||++++..+++.
T Consensus        85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll  164 (585)
T PRK14950         85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP  164 (585)
T ss_pred             cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence                                                  899999999999999999999999998899999998888899


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~  181 (287)
                      ++++|||..+.|.+++..++..++.+++.++|+.++++++..+++.++|++|++++.++++..+.+ .++..+  .....
T Consensus       165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~ll~~  244 (585)
T PRK14950        165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSLLGI  244 (585)
T ss_pred             HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999999999877532 222211  11111


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----------------------------HHH
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEG----------------------------LLA  233 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------------------------~~~  233 (287)
                      .....++++.+.+... +...+.   ..+..+...|..+..++..+..+                            ..+
T Consensus       245 s~~~~vf~Lidal~~~-d~~~al---~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa~  320 (585)
T PRK14950        245 SGDEEVKALAEALLAK-DLKAAL---RTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVSQ  320 (585)
T ss_pred             CCHHHHHHHHHHHHcC-CHHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHHh
Confidence            2233455666555433 222222   22333334444444443322222                            223


Q ss_pred             hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         234 NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      .++...+..++..+.+.+..++.|..+.+.+|.++++++.
T Consensus       321 ~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~  360 (585)
T PRK14950        321 IANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALL  360 (585)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence            4666778889999999999999999899999999998875

>PRK04195 replication factor C large subunit; Provisional

Probab=100.00  E-value=4.9e-31  Score=241.16  Aligned_cols=264  Identities=25%  Similarity=0.387  Sum_probs=204.0

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHh---cCCC-CcEEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLK---EGDF-PHLLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~---~g~~-~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      ||+|++||||+++++++|+..++..+..++.   .|.. ++++|+||||+||||+++++++.+...              
T Consensus         1 ~~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~   80 (482)
T PRK04195          1 MMPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADV   80 (482)
T ss_pred             CCCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHH
Confidence            7899999999999999999999999998885   4443 349999999999999999999877422              


Q ss_pred             --------------------EEEEeCCCCCCH----HHHHHHHHHHHhccCCcEEEEEeCCCCCCcH-HHhcccceeecC
Q psy2281          63 --------------------VIILNETDHLTR----EAQQALRRTMEKYITTCRLILCANSMSQVIP-AIRSRCLCIRIP  117 (287)
Q Consensus        63 --------------------~i~ide~d~l~~----~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~-~l~sr~~~~~~~  117 (287)
                                          +|+|||+|.++.    ....++++.++.  ....+|++++....+.. ++++||..+.|+
T Consensus        81 i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~  158 (482)
T PRK04195         81 IERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRNACLMIEFK  158 (482)
T ss_pred             HHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhccceEEEec
Confidence                                899999999875    456778888874  34568888888877776 899999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccC--ccCccHHHHHHHHHHHHH
Q psy2281         118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ--IVEPDWKIYIRDTAKLII  195 (287)
Q Consensus       118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~--~~~~~~~~~i~~l~~~i~  195 (287)
                      +++..++..++..++..+|+.+++++++.+++.++||+|.+++.++.+....+.++..+.  ....+....++++...++
T Consensus       159 ~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~~d~~~~if~~l~~i~  238 (482)
T PRK04195        159 RLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGRRDREESIFDALDAVF  238 (482)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhcCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999985543333332221  222333445667777777


Q ss_pred             hccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCh-HHH---HHHHHHHHHHhhHHhcCCChHHHHHHHHHHH
Q psy2281         196 SEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDS-DLK---SKSIEMAAMFEHRIHKGSKPIFHIEAYVASF  271 (287)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~  271 (287)
                      ...+...+..   .++   ....+++.++.++++.+...+.. +..   ...+..+..+..++..+.+  ++|..|.+.+
T Consensus       239 ~~k~~~~a~~---~~~---~~~~~~~~i~~~l~en~~~~~~~~~~~~~a~~~ls~ad~~~~~~~~~~~--~~l~~~~~~~  310 (482)
T PRK04195        239 KARNADQALE---ASY---DVDEDPDDLIEWIDENIPKEYDDPEDIARAYDALSRADIFLGRVKRTQN--YDLWRYASDL  310 (482)
T ss_pred             CCCCHHHHHH---HHH---cccCCHHHHHHHHHhccccccCCHHHHHHHHHHHhHHHHHHHHHHhcCC--cchHHHHHHH
Confidence            6544443322   222   34678999999999888776543 333   3455555677778877655  8899998887


Q ss_pred             HHH
Q psy2281         272 MAM  274 (287)
Q Consensus       272 ~~~  274 (287)
                      |..
T Consensus       311 m~~  313 (482)
T PRK04195        311 MTA  313 (482)
T ss_pred             hhh
Confidence            653

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=100.00  E-value=2.3e-31  Score=242.50  Aligned_cols=227  Identities=22%  Similarity=0.301  Sum_probs=188.3

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|.+||||++|++++|++.+++.|...+..|+.+| ++|+||+|+||||+++++++.+.+.                   
T Consensus         5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~   84 (605)
T PRK05896          5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINT   84 (605)
T ss_pred             hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHc
Confidence            59999999999999999999999999999999998 9999999999999999999987531                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|+++++.++.++.+|++++...++.+
T Consensus        85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~  164 (605)
T PRK05896         85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL  164 (605)
T ss_pred             CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence                                                 9999999999999999999999999999999999998899999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc--CccCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ--QIVEPD  182 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d--~~~~~~  182 (287)
                      +++|||+.++|.+++.+++..++..++.++|+.+++++++.++++|+|++|+|++.++++..+.+. ++..+  ......
T Consensus       165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~ellg~~  244 (605)
T PRK05896        165 TIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFGLV  244 (605)
T ss_pred             HHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccC
Confidence            999999999999999999999999999999999999999999999999999999999998776542 22111  000011


Q ss_pred             HHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q psy2281         183 WKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA  233 (287)
Q Consensus       183 ~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~  233 (287)
                      ..+.+.++.+.+... +   ...+...+.+++..|.++..++..+..++..
T Consensus       245 ~~~~Vf~Ll~AI~~k-d---~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD  291 (605)
T PRK05896        245 DNNKKINLIELIQKN-D---IEELRNLINELESKGINFEAFCRDLINLLID  291 (605)
T ss_pred             CHHHHHHHHHHHHCC-C---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            112345555555333 3   3334444566778899999988877776654

>KOG2028|consensus

Probab=100.00  E-value=2.4e-32  Score=229.29  Aligned_cols=251  Identities=16%  Similarity=0.222  Sum_probs=194.1

Q ss_pred             ccccccCCCCCCCccCcHHHH---HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~---~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------   62 (287)
                      |.+|+.||+++++.+||.+.+   ..|...++++++|.++||||||||||||++.|+......                 
T Consensus       127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dv  206 (554)
T KOG2028|consen  127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDV  206 (554)
T ss_pred             ChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHH
Confidence            678999999999999999875   578888999999999999999999999999998765422                 


Q ss_pred             ------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC----CcHHHhcccceeecCCCC
Q psy2281          63 ------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ----VIPAIRSRCLCIRIPAPT  120 (287)
Q Consensus        63 ------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~----l~~~l~sr~~~~~~~~~~  120 (287)
                                        ++||||++++....|+.|+..+|    ++.++++....+|    +..++.|||.++.+.+++
T Consensus       207 R~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE----~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~  282 (554)
T KOG2028|consen  207 RDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE----NGDITLIGATTENPSFQLNAALLSRCRVFVLEKLP  282 (554)
T ss_pred             HHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceec----cCceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence                              99999999999998888888777    3444444433333    788999999999999999


Q ss_pred             HHHHHHHHHHHHHHhC-------------CCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHH
Q psy2281         121 HEEIVSVLTNICKKEG-------------LTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYI  187 (287)
Q Consensus       121 ~~~~~~~l~~~~~~~~-------------~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i  187 (287)
                      .+.+..++.+.+...+             +.+++..+++++.+|.||.|.|+|.++-.+-..-.-++...    ...-.+
T Consensus       283 ~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~----~~~lSi  358 (554)
T KOG2028|consen  283 VNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSS----RVLLSI  358 (554)
T ss_pred             HHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcc----cceecH
Confidence            9999999988554221             23577889999999999999999999976332111111110    001123


Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHH
Q psy2281         188 RDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAY  267 (287)
Q Consensus       188 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~  267 (287)
                      .++.+.+...|  ..+.+..+..|+.++.              ++|++    +....++..+|.+||..|+++++    |
T Consensus       359 dDvke~lq~s~--~~YDr~Ge~HYntISA--------------~HKSm----RG~D~nAslY~LaRMLegGEdPL----Y  414 (554)
T KOG2028|consen  359 DDVKEGLQRSH--ILYDRAGEEHYNTISA--------------LHKSM----RGSDQNASLYWLARMLEGGEDPL----Y  414 (554)
T ss_pred             HHHHHHHhhcc--ceecccchhHHHHHHH--------------HHHhh----cCCccchHHHHHHHHHccCCCcH----H
Confidence            44444444444  3556667777777654              66766    66777788999999999999999    9


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q psy2281         268 VASFMAMYLQFMEDTLSN  285 (287)
Q Consensus       268 i~~~~~~~~~~~~~~~~~  285 (287)
                      +||.|..++++|||++|+
T Consensus       415 VARRlvR~ASEDIGlaD~  432 (554)
T KOG2028|consen  415 VARRLVRFASEDIGLADP  432 (554)
T ss_pred             HHHHHHHHhhcccCcCCc
Confidence            999999999999999997

>PRK04132 replication factor C small subunit; Provisional

Probab=99.97  E-value=4.1e-29  Score=236.05  Aligned_cols=233  Identities=28%  Similarity=0.422  Sum_probs=198.9

Q ss_pred             EEEeC--CCCCcHHHHHHHHHHHhCCC---------------------------------------EEEEeCCCCCCHHH
Q psy2281          38 LLFYG--PSGAGKKTRIMALLKELYGP---------------------------------------VIILNETDHLTREA   76 (287)
Q Consensus        38 ~~l~G--p~G~GKTtl~~~l~~~~~~~---------------------------------------~i~ide~d~l~~~~   76 (287)
                      .+..|  |++.||||+++++++.++++                                       +++|||+|.++..+
T Consensus       567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~A  646 (846)
T PRK04132        567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA  646 (846)
T ss_pred             hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHH
Confidence            45568  88999999999999997432                                       89999999999999


Q ss_pred             HHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH
Q psy2281          77 QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLR  156 (287)
Q Consensus        77 ~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r  156 (287)
                      |++|++.|+.++++++||++||...++.++++|||+.++|++++.+++..++.++++++|+.++++++..++..|+||+|
T Consensus       647 QnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDlR  726 (846)
T PRK04132        647 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMR  726 (846)
T ss_pred             HHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCcccccC--ccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHH
Q psy2281         157 RAILMCEASKVQQYPFQIDQQ--IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA  233 (287)
Q Consensus       157 ~al~~l~~~~~~dep~~~~d~--~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~  233 (287)
                      +|++.++.+....+.++..+.  .......+.+.++...++..    .+...+..+++++ ..|+++.+++.+++..+..
T Consensus       727 ~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~----~~~~ar~~l~ell~~~G~~~~~iL~~l~~~l~~  802 (846)
T PRK04132        727 RAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKG----NFLKAREKLREILLKQGLSGEDVLVQMHREVFN  802 (846)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcC----cHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            999999988765544333221  11112223455555544433    4667777788876 7899999999999999987


Q ss_pred             -hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         234 -NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       234 -~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                       .+++..+..++..+++++.++..|+++.+||++|+++++.+
T Consensus       803 ~~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~~  844 (846)
T PRK04132        803 LPIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTLM  844 (846)
T ss_pred             cCCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHhh
Confidence             68889999999999999999999999999999999999753

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.97  E-value=3.7e-29  Score=224.75  Aligned_cols=244  Identities=18%  Similarity=0.282  Sum_probs=183.1

Q ss_pred             ccccccCCCCCCCccCcHHHHHH---HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANH---LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~---l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------   62 (287)
                      ||++||||++|++++|+.+++..   +...+..+..++++|+||||+||||+++++++.....                 
T Consensus         1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~i   80 (413)
T PRK13342          1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREV   80 (413)
T ss_pred             ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHH
Confidence            79999999999999999998665   9999998888889999999999999999999876533                 


Q ss_pred             --------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC--CCCcHHHhcccceeecCCCCHHHHHH
Q psy2281          63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM--SQVIPAIRSRCLCIRIPAPTHEEIVS  126 (287)
Q Consensus        63 --------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~--~~l~~~l~sr~~~~~~~~~~~~~~~~  126 (287)
                                    +++|||+|.++...++.|+..++.  ....++.+++..  ..+.++++|||..+.|.+++.+++..
T Consensus        81 i~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~  158 (413)
T PRK13342         81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQ  158 (413)
T ss_pred             HHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHH
Confidence                          899999999999999999988874  222333333322  35888999999999999999999999


Q ss_pred             HHHHHHHHh--CC-CCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccChhHH
Q psy2281         127 VLTNICKKE--GL-TIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKL  203 (287)
Q Consensus       127 ~l~~~~~~~--~~-~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~  203 (287)
                      ++.+.+...  ++ .+++++.+.+++.++||.|++++.++.+...++.      +..    +.+.++.......     .
T Consensus       159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~------It~----~~v~~~~~~~~~~-----~  223 (413)
T PRK13342        159 LLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDS------ITL----ELLEEALQKRAAR-----Y  223 (413)
T ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCC------CCH----HHHHHHHhhhhhc-----c
Confidence            999988753  44 7799999999999999999999999987765221      111    1222222211000     0


Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhh
Q psy2281         204 LEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTL  283 (287)
Q Consensus       204 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~  283 (287)
                      .+-.+..++++              ..+.+.+    +....+.+.+|..+|..++.++.    ++++.+.+++++|+|+|
T Consensus       224 d~~~~~~~~~i--------------sa~~ks~----rgsd~~aal~~l~~~l~~G~d~~----~i~rrl~~~a~edig~a  281 (413)
T PRK13342        224 DKDGDEHYDLI--------------SALHKSI----RGSDPDAALYYLARMLEAGEDPL----FIARRLVIIASEDIGLA  281 (413)
T ss_pred             CCCccHHHHHH--------------HHHHHHH----hcCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHhhccc
Confidence            01112222222              2233333    34455667889999999988877    79999999999999999


Q ss_pred             hc
Q psy2281         284 SN  285 (287)
Q Consensus       284 ~~  285 (287)
                      |.
T Consensus       282 ~~  283 (413)
T PRK13342        282 DP  283 (413)
T ss_pred             CH
Confidence            84

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.97  E-value=2.4e-29  Score=236.52  Aligned_cols=250  Identities=16%  Similarity=0.200  Sum_probs=184.8

Q ss_pred             CccccccCCCCCCCccCcHHHH---HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~---~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      .||++||||++|++++|+.+++   ..+...+..+..+|++|+||||+||||+++++++.....                
T Consensus        16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~   95 (725)
T PRK13341         16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRA   95 (725)
T ss_pred             CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHH
Confidence            3899999999999999999887   478888899999999999999999999999998765322                


Q ss_pred             ----------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC----CCCcHHHhcccceeecCCCCHH
Q psy2281          63 ----------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM----SQVIPAIRSRCLCIRIPAPTHE  122 (287)
Q Consensus        63 ----------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~----~~l~~~l~sr~~~~~~~~~~~~  122 (287)
                                      +++|||+|.++...|+.|+..++.    ..+++++...    ..+.++++|||.++.|++++.+
T Consensus        96 ~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~----g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~e  171 (725)
T PRK13341         96 EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN----GTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDE  171 (725)
T ss_pred             HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC----ceEEEEEecCCChHhhhhhHhhccccceecCCCCHH
Confidence                            799999999999989999888774    3344433222    2478899999999999999999


Q ss_pred             HHHHHHHHHHH-------HhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHH
Q psy2281         123 EIVSVLTNICK-------KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLII  195 (287)
Q Consensus       123 ~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~  195 (287)
                      ++..++.+++.       ..++.+++++++.+++.++||+|++++.++.++..... ...+..  ....+.+.+......
T Consensus       172 di~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~-~~~~~i--~It~~~~~e~l~~~~  248 (725)
T PRK13341        172 DLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPP-DEDGLI--DITLAIAEESIQQRA  248 (725)
T ss_pred             HHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc-CCCCce--eccHHHHHHHHHHhh
Confidence            99999999987       45678899999999999999999999999987643221 000000  000111222111100


Q ss_pred             hccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         196 SEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                      .     ......+..|+.+              ..+.|++    +.+..+.+.+|..+|..++.++.    +++|.+.++
T Consensus       249 ~-----~ydk~gd~hyd~I--------------sa~~ksi----rgsD~daAl~~la~ml~~Gedp~----~I~Rrl~~~  301 (725)
T PRK13341        249 V-----LYDKEGDAHFDTI--------------SAFIKSL----RGSDPDAALYWLARMVEAGEDPR----FIFRRMLIA  301 (725)
T ss_pred             h-----hcccCCCCCHHHH--------------HHHHHHH----hcCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHH
Confidence            0     0000011112221              2244555    56677888899999999998887    899999999


Q ss_pred             HHHHHhhhhc
Q psy2281         276 LQFMEDTLSN  285 (287)
Q Consensus       276 ~~~~~~~~~~  285 (287)
                      +++|+|+||.
T Consensus       302 asEdigladp  311 (725)
T PRK13341        302 ASEDVGLADP  311 (725)
T ss_pred             HHhccCCCCh
Confidence            9999999874

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.95  E-value=3.6e-30  Score=202.79  Aligned_cols=204  Identities=20%  Similarity=0.161  Sum_probs=175.6

Q ss_pred             CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281          11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI   88 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~   88 (287)
                      +++..-+|..++++.++..+.+|+.  ++++|||||||||++||+.+...++  .|.+|+.+.........+|+.++.++
T Consensus         6 ~~l~K~fg~~~VLkgi~l~v~~Gev--v~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF   83 (240)
T COG1126           6 KNLSKSFGDKEVLKGISLSVEKGEV--VVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVF   83 (240)
T ss_pred             EeeeEEeCCeEEecCcceeEcCCCE--EEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeec
Confidence            4556667778888888889999999  9999999999999999999987766  89999865444446778899999999


Q ss_pred             CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      |+..+++..|+.+|+..+..      .....++++..+.....+++.|+  .+.+..++.++|||+.||     |+++.|
T Consensus        84 Q~fnLFPHlTvleNv~lap~------~v~~~~k~eA~~~A~~lL~~VGL--~~ka~~yP~qLSGGQqQRVAIARALaM~P  155 (240)
T COG1126          84 QQFNLFPHLTVLENVTLAPV------KVKKLSKAEAREKALELLEKVGL--ADKADAYPAQLSGGQQQRVAIARALAMDP  155 (240)
T ss_pred             ccccccccchHHHHHHhhhH------HHcCCCHHHHHHHHHHHHHHcCc--hhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence            99999999999999876543      26788999999999999999999  789999999999999998     888999


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH-----HhcCCCHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL-----LVHSIPVNVLFK  225 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~i~~  225 (287)
                      +++++|||||++|+.....+.+.+.+++++    +++||.+..+.++.|+++-+     +..| +|++++.
T Consensus       156 ~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g-~p~~~f~  225 (240)
T COG1126         156 KVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG-PPEEFFD  225 (240)
T ss_pred             CEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec-CHHHHhc
Confidence            999999999999999999999999999987    78999999999999998733     2334 6666653

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.94  E-value=2.8e-28  Score=196.18  Aligned_cols=213  Identities=16%  Similarity=0.184  Sum_probs=178.6

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT   89 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~   89 (287)
                      +++.-+++..+++.++..++.|++  ++|.|||||||||+++.|.+.+.++  .|.||+.+..+.+ ...||+.++|+-|
T Consensus         6 nvsk~y~~~~av~~v~l~I~~gef--~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d-~~~LRr~IGYviQ   82 (309)
T COG1125           6 NVSKRYGNKKAVDDVNLTIEEGEF--LVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD-PVELRRKIGYVIQ   82 (309)
T ss_pred             eeehhcCCceeeeeeeEEecCCeE--EEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC-HHHHHHhhhhhhh
Confidence            444555667778888888899999  9999999999999999999998877  8999988754433 4578999999999


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      ...+++..|+.+|+..-..       +.+.+++.+.+++.+.++..|+.-.+...+++.++|||+.||     |+...|.
T Consensus        83 qigLFPh~Tv~eNIa~VP~-------L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~  155 (309)
T COG1125          83 QIGLFPHLTVAENIATVPK-------LLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPP  155 (309)
T ss_pred             hcccCCCccHHHHHHhhhh-------hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCC
Confidence            9999999999998643222       557889999999999999999964456789999999999998     9999999


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHh
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFKYLLEGLLAN  234 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~  234 (287)
                      ++++||||+++|++++..+.+.+.++.+.     +++||+.+++.++.|++..+-.+.    -+|+.++.+....+.+.
T Consensus       156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~~  234 (309)
T COG1125         156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVED  234 (309)
T ss_pred             eEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHHH
Confidence            99999999999999999999999999877     789999999999999987553322    27788877666666654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.94  E-value=1.2e-25  Score=180.19  Aligned_cols=164  Identities=22%  Similarity=0.321  Sum_probs=128.5

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      +..+++||++|++++||++++..++-.++     +...+|++||||||+|||||++.+++++..+               
T Consensus        13 ~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl   92 (233)
T PF05496_consen   13 PLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDL   92 (233)
T ss_dssp             -HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHH
T ss_pred             hhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHH
Confidence            56788999999999999999988876663     2456789999999999999999999998644               


Q ss_pred             -----------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhcccce
Q psy2281          63 -----------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRCLC  113 (287)
Q Consensus        63 -----------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~~~  113 (287)
                                 ++||||+|.+++..|+.|+..||...                  +...++-++|....+..|+++||.+
T Consensus        93 ~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi  172 (233)
T PF05496_consen   93 AAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGI  172 (233)
T ss_dssp             HHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSE
T ss_pred             HHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcce
Confidence                       99999999999999999999999521                  1234666677777899999999986


Q ss_pred             -eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         114 -IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       114 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                       .++..++.+++.+++++.+...++++++++...++..|.|..|-|.+.+..+-
T Consensus       173 ~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr  226 (233)
T PF05496_consen  173 VLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR  226 (233)
T ss_dssp             EEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred             ecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence             47888999999999999999999999999999999999999999999998764

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.93  E-value=4.1e-23  Score=179.46  Aligned_cols=256  Identities=18%  Similarity=0.253  Sum_probs=180.3

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------------------
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------------------   62 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------   62 (287)
                      +|++++|++.+++.+...+.+|+.|| ++|+||+|+||||+++.+++.+.+.                            
T Consensus         2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~   81 (313)
T PRK05564          2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI   81 (313)
T ss_pred             ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence            68999999999999999999999999 7999999999999999999976321                            


Q ss_pred             --------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHH
Q psy2281          63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVL  128 (287)
Q Consensus        63 --------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l  128 (287)
                                    +++||++|.++..++++|+++++++++++.++++++.++.+.++++|||+.+.|.+++.+++..++
T Consensus        82 ~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l  161 (313)
T PRK05564         82 IEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI  161 (313)
T ss_pred             HHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence                          999999999999999999999999999999999999899999999999999999999999999888


Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CC-CcccccCccCccHHHHHHHHHHHHHh--ccChhHH
Q psy2281         129 TNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QY-PFQIDQQIVEPDWKIYIRDTAKLIIS--EQSPKKL  203 (287)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--de-p~~~~d~~~~~~~~~~i~~l~~~i~~--~~~~~~~  203 (287)
                      .+...  +  ++++..+.++.+++|...+|......-...  .+ -+...+.......... ..+.+.+..  .+....+
T Consensus       162 ~~~~~--~--~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-l~~~~~l~~~~~~~~~~l  236 (313)
T PRK05564        162 SYKYN--D--IKEEEKKSAIAFSDGIPGKVEKFIEDDSLKNIRNMSLEILKDIKKSNINIL-LKYENFLIKYKENWEEIL  236 (313)
T ss_pred             HHHhc--C--CCHHHHHHHHHHcCCCHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHcCccHHHHH
Confidence            76442  3  477888889999999988876554221100  00 0000010111111111 111111211  1111112


Q ss_pred             HHHHHHHHHHHh--cCCCHHHHH-H---HHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHH
Q psy2281         204 LEVRTRLYELLV--HSIPVNVLF-K---YLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM  272 (287)
Q Consensus       204 ~~~~~~~~~l~~--~~~~~~~i~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~  272 (287)
                      ..+...+.+++.  .+.....+. .   .......+.++......+++.+.+.+..++.+.++.+.+|.++.++.
T Consensus       237 ~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~l~~~~~~l~~n~n~~l~le~lll~~~  311 (313)
T PRK05564        237 TCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTRDNLSSNVNPTLVFDSMLIKMQ  311 (313)
T ss_pred             HHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhhh
Confidence            222223333331  111111111 1   22223344677888889999999999999999999999999998764

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.92  E-value=8.6e-27  Score=186.49  Aligned_cols=203  Identities=19%  Similarity=0.147  Sum_probs=174.4

Q ss_pred             CCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC--CCCHHHHHHHHHHHHhcc
Q psy2281          13 LQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD--HLTREAQQALRRTMEKYI   88 (287)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d--~l~~~~~~~l~~~i~~~~   88 (287)
                      +..-+|+..+.+.+...+.+|+.  +.+.||||+||||++|.+.+++.++  .|.+++.+  .+++..+..+++.++..+
T Consensus        14 v~~~fG~~~Ild~v~l~V~~Gei--~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlF   91 (263)
T COG1127          14 VTKSFGDRVILDGVDLDVPRGEI--LAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLF   91 (263)
T ss_pred             eeeecCCEEEecCceeeecCCcE--EEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEe
Confidence            33445666777888888899999  9999999999999999999999887  77777655  466777778899999999


Q ss_pred             CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHH
Q psy2281          89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMC  162 (287)
Q Consensus        89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l  162 (287)
                      |...++-..|+.+|+..+++.      ...++++.+.+.+...++..|+  ... +..++.++|||..+|     |++..
T Consensus        92 Q~gALFssltV~eNVafplre------~~~lp~~~i~~lv~~KL~~VGL--~~~~~~~~PsELSGGM~KRvaLARAiald  163 (263)
T COG1127          92 QQGALFSSLTVFENVAFPLRE------HTKLPESLIRELVLMKLELVGL--RGAAADLYPSELSGGMRKRVALARAIALD  163 (263)
T ss_pred             eccccccccchhHhhheehHh------hccCCHHHHHHHHHHHHHhcCC--ChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence            999999999999999998884      5678899999999999999999  455 778899999998887     89999


Q ss_pred             HHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         163 EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       163 ~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      |.++++||||+++|++....+.++|.++.++     +++||+...+..++|+++.+.+.++    +++++.+
T Consensus       164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHh
Confidence            9999999999999999999999999999988     7899999999999999986644333    5566654

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.92  E-value=9.8e-23  Score=180.28  Aligned_cols=146  Identities=29%  Similarity=0.481  Sum_probs=129.9

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCC---------CCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGD---------FPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~---------~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .|++++|++.+++.|+..+..+.         .|| ++|+||+|+|||++++++++.+.+.                   
T Consensus         3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~   82 (394)
T PRK07940          3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG   82 (394)
T ss_pred             hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence            57899999999999999998876         788 9999999999999999998865320                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           +++|||+|.++..++++|++.++.++.++.|+++++..+.+.+
T Consensus        83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llp  162 (394)
T PRK07940         83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLP  162 (394)
T ss_pred             CCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChH
Confidence                                                 8999999999999999999999999999999999999999999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC  162 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l  162 (287)
                      +++|||+.+.|++++.+++..++.+   ..++  +++....++.+|+|+..+|+...
T Consensus       163 TIrSRc~~i~f~~~~~~~i~~~L~~---~~~~--~~~~a~~la~~s~G~~~~A~~l~  214 (394)
T PRK07940        163 TIRSRCRHVALRTPSVEAVAEVLVR---RDGV--DPETARRAARASQGHIGRARRLA  214 (394)
T ss_pred             HHHhhCeEEECCCCCHHHHHHHHHH---hcCC--CHHHHHHHHHHcCCCHHHHHHHh
Confidence            9999999999999999998888863   2354  78888899999999999876653

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.91  E-value=2.9e-25  Score=174.56  Aligned_cols=195  Identities=16%  Similarity=0.115  Sum_probs=162.0

Q ss_pred             cCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------EEEEeCCCCCCHH-HHHH
Q psy2281           8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------VIILNETDHLTRE-AQQA   79 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------~i~ide~d~l~~~-~~~~   79 (287)
                      +.-++++-.+|.+++++.++.-+.++.+  ..|.|||||||||++|++.+.....       -|.+|+.+..... ....
T Consensus         8 ~~~~~l~~yYg~~~aL~~i~l~i~~~~V--TAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~   85 (253)
T COG1117           8 IEVRDLNLYYGDKHALKDINLDIPKNKV--TALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE   85 (253)
T ss_pred             eEecceeEEECchhhhccCceeccCCce--EEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence            4455677778888888999888899988  9999999999999999998765321       7888888766543 3567


Q ss_pred             HHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcH
Q psy2281          80 LRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNL  155 (287)
Q Consensus        80 l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~  155 (287)
                      +|+.++.++|.+.-++ .+..+|+..+++       ......+++.+++++.+++..+  .+++.+.+.    .+|||+.
T Consensus        86 lRr~vGMVFQkPnPFp-~SIydNVayG~r-------~~g~~~~~ldeiVe~sLk~AaL--WdEVKDrL~~sa~~LSGGQQ  155 (253)
T COG1117          86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLR-------LHGIKDKELDEIVESSLKKAAL--WDEVKDRLHKSALGLSGGQQ  155 (253)
T ss_pred             HHHHheeeccCCCCCC-chHHHHHHHhHH-------hhccchHHHHHHHHHHHHHhHh--HHHhHHHhhCCccCCChhHH
Confidence            8999999999887666 688899998887       4455557888889988888777  666666664    5899998


Q ss_pred             HH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         156 RR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       156 r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ||     |++..|.++++|||++++|+++...++++|.++.+.   +++||++..+.++.|...-++
T Consensus       156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~  222 (253)
T COG1117         156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFY  222 (253)
T ss_pred             HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhc
Confidence            88     888889999999999999999999999999999977   789999999999999876443

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.91  E-value=7e-26  Score=194.75  Aligned_cols=209  Identities=14%  Similarity=0.139  Sum_probs=172.9

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT   89 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~   89 (287)
                      ++...+|...+++.++..+++|++  +.|.|||||||||++|+||+...++  .|.+|+.+...-   ..-.|.++.++|
T Consensus        10 ~v~k~yg~~~av~~isl~i~~Gef--~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~l---pp~kR~ig~VFQ   84 (352)
T COG3842          10 NVSKSFGDFTAVDDISLDIKKGEF--VTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDV---PPEKRPIGMVFQ   84 (352)
T ss_pred             eeeeecCCeeEEecceeeecCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC---Chhhcccceeec
Confidence            344555656677888888899999  9999999999999999999999877  889998664321   112467999999


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      +..+++..|+.+|+..+++-      -..+.++++.+++.++++..++  ++...+++.++|||+.||     |+...|.
T Consensus        85 ~YALFPHltV~~NVafGLk~------~~~~~~~~i~~rv~e~L~lV~L--~~~~~R~p~qLSGGQqQRVALARAL~~~P~  156 (352)
T COG3842          85 SYALFPHMTVEENVAFGLKV------RKKLKKAEIKARVEEALELVGL--EGFADRKPHQLSGGQQQRVALARALVPEPK  156 (352)
T ss_pred             CcccCCCCcHHHHhhhhhhh------cCCCCHHHHHHHHHHHHHHcCc--hhhhhhChhhhChHHHHHHHHHHHhhcCcc
Confidence            99999999999999999882      2346778899999999999888  788999999999999998     8888899


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV----HSIPVNVLFKYLLEGLLA  233 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~----~~~~~~~i~~~~~~~~~~  233 (287)
                      ++++|||.+.+|...+..+...++++.++     +++|||.+++..++|++..+-.    +-.+|+++.......+..
T Consensus       157 vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA  234 (352)
T COG3842         157 VLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVA  234 (352)
T ss_pred             hhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHH
Confidence            99999999999999888888889888877     7899999999999999986643    333777777655444443

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=6.4e-25  Score=181.85  Aligned_cols=182  Identities=14%  Similarity=0.136  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      .+.+.++..+++|++  +.+.|.||+|||||+|++.+...|+  -|++|+.|.  ++......+|+.++.++|+..++-.
T Consensus        20 ~al~~vsL~I~~GeI--~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss   97 (339)
T COG1135          20 TALDDVSLEIPKGEI--FGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS   97 (339)
T ss_pred             eeeccceEEEcCCcE--EEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence            345666677799999  9999999999999999999988777  888888543  5666778889999999999999988


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .|+.+|+..|+.       ....+++++.+++.+.++..|+  ++....+++++|||+.||     |+...|+++++||+
T Consensus        98 rTV~~NvA~PLe-------iag~~k~ei~~RV~elLelVgL--~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEa  168 (339)
T COG1135          98 RTVFENVAFPLE-------LAGVPKAEIKQRVAELLELVGL--SDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEA  168 (339)
T ss_pred             chHHhhhhhhHh-------hcCCCHHHHHHHHHHHHHHcCC--hhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCc
Confidence            899999999988       7778899999999999999999  788999999999999988     99999999999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++|+.+...+.+.+.++.++     ++++|.++.+.++|+++..|
T Consensus       169 TSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm  215 (339)
T COG1135         169 TSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVL  215 (339)
T ss_pred             cccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEe
Confidence            9999999999999999999887     78999999999999998854

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.90  E-value=8.1e-25  Score=174.73  Aligned_cols=217  Identities=17%  Similarity=0.159  Sum_probs=172.9

Q ss_pred             CCCCcc-CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHh
Q psy2281          12 NLQKLD-FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEK   86 (287)
Q Consensus        12 ~~~~~~-~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~   86 (287)
                      ++...+ +...+...++..+++|++  +.+.||||+|||||+|++.+...+.  .|++++.+.  +.......+++.+++
T Consensus         8 nl~k~yp~~~~aL~~Vnl~I~~GE~--VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGm   85 (258)
T COG3638           8 NLSKTYPGGHQALKDVNLEINQGEM--VAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGM   85 (258)
T ss_pred             eeeeecCCCceeeeeEeEEeCCCcE--EEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhcee
Confidence            444444 555667788888899999  9999999999999999999977655  777777554  445567778889999


Q ss_pred             ccCCcEEEEEeCCCCCCcHHHhccccee--ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HH
Q psy2281          87 YITTCRLILCANSMSQVIPAIRSRCLCI--RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AI  159 (287)
Q Consensus        87 ~~~~~~~i~~~~~~~~l~~~l~sr~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al  159 (287)
                      ++|...++.-.++.+|+..+...+...+  -|.-+++++.... -..+++.|+  .+.+.++...+|||++||     |+
T Consensus        86 IfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~A-l~aLervgi--~~~A~qra~~LSGGQQQRVaIARaL  162 (258)
T COG3638          86 IFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA-LDALERVGI--LDKAYQRASTLSGGQQQRVAIARAL  162 (258)
T ss_pred             EeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHH-HHHHHHcCc--HHHHHHHhccCCcchhHHHHHHHHH
Confidence            9999999999888888877666554322  2555666555544 456777887  789999999999999998     88


Q ss_pred             HHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHHHHHHH
Q psy2281         160 LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFKYLLEG  230 (287)
Q Consensus       160 ~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~~~~~~  230 (287)
                      ...+++++.|||++++|+.+...+++.++++.++     +++-|+.+-+.+++++++.+-.+.+    ++.++..+....
T Consensus       163 ~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~~~~~~  242 (258)
T COG3638         163 VQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDE  242 (258)
T ss_pred             hcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhHHHHHH
Confidence            8889999999999999999999999999999877     7789999999999999997654432    566666666666


Q ss_pred             HHH
Q psy2281         231 LLA  233 (287)
Q Consensus       231 ~~~  233 (287)
                      ++.
T Consensus       243 iYg  245 (258)
T COG3638         243 IYG  245 (258)
T ss_pred             Hhc
Confidence            654

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.90  E-value=1.9e-21  Score=167.72  Aligned_cols=236  Identities=19%  Similarity=0.241  Sum_probs=168.6

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-----------------------------
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-----------------------------   61 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-----------------------------   61 (287)
                      .|++++|++.+++.|...+.+|++|| ++|+||+|+||++++.++++.+.+                             
T Consensus         2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~   81 (314)
T PRK07399          2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH   81 (314)
T ss_pred             cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence            57899999999999999999999988 999999999999999999877521                             


Q ss_pred             ---------------------C-----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          62 ---------------------P-----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        62 ---------------------~-----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                                           .                       +++||++|.|+..++++|++.+|+++ ++.|++++
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~  160 (314)
T PRK07399         82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIA  160 (314)
T ss_pred             cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEE
Confidence                                 0                       99999999999999999999999999 78899999


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccC
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~  177 (287)
                      +.++.++++++|||+.++|.+++.+++..++.+.....+.   +.....+..+++|+.++|+..++...-.  +      
T Consensus       161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~Gs~~~al~~l~~~~~~--~------  229 (314)
T PRK07399        161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQGSPGAAIANIEQLQSI--P------  229 (314)
T ss_pred             CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCCCHHHHHHHHHHHHHH--H------
Confidence            9999999999999999999999999999999987543333   2224678899999999999887643210  0      


Q ss_pred             ccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHhhHHhc
Q psy2281         178 IVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCD-SDLKSKSIEMAAMFEHRIHK  256 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  256 (287)
                             ..+.+...... . +..++....+.+.    .+...+.- ..+..|+...+- ......+++.+......+..
T Consensus       230 -------~~~~~~~~~~~-~-~~~~~~~~a~~~~----~~~~~e~Q-~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~l~~  295 (314)
T PRK07399        230 -------PELLQKLEQPP-K-SPLEALELAKDIS----EELDIEQQ-LWLIDYLQQHYWQKTKNRQLLKQLEKLRKQLLS  295 (314)
T ss_pred             -------HHHHHHHHhcc-c-CHHHHHHHHHHHH----HhcCHHHH-HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence                   01111111111 1 1222222222221    11111110 022222221110 01135667788888888999


Q ss_pred             CCChHHHHHHHHHHHHH
Q psy2281         257 GSKPIFHIEAYVASFMA  273 (287)
Q Consensus       257 g~~~~~~l~~~i~~~~~  273 (287)
                      ++++.+.++.++.++..
T Consensus       296 nvn~~lv~e~~~l~l~~  312 (314)
T PRK07399        296 YVQPRLAWEVTLLELSQ  312 (314)
T ss_pred             cCCcchhHHHHHHHHhc
Confidence            99999999999887753

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.90  E-value=4.1e-21  Score=167.46  Aligned_cols=253  Identities=20%  Similarity=0.277  Sum_probs=173.9

Q ss_pred             CCCCccC-cHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------------------
Q psy2281          12 NLQKLDF-HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------------------   62 (287)
Q Consensus        12 ~~~~~~~-~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------   62 (287)
                      .++.+.| ++.+.+.|+..+.+|++|| ++|+||+|+||+|+++.+++.+.+.                           
T Consensus         3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~   82 (329)
T PRK08058          3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL   82 (329)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence            3567888 8889999999999999999 7999999999999999998887421                           


Q ss_pred             ------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccc
Q psy2281          63 ------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL  112 (287)
Q Consensus        63 ------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~  112 (287)
                                                    +++||+++.++..++++|++++|++++++.||++++...++.++++|||+
T Consensus        83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~  162 (329)
T PRK08058         83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ  162 (329)
T ss_pred             eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence                                          99999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC--CC-cccccCccCccHHHHHHH
Q psy2281         113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ--YP-FQIDQQIVEPDWKIYIRD  189 (287)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d--ep-~~~~d~~~~~~~~~~i~~  189 (287)
                      .+.|.+++.+++..++..    .|+  +......++..+ |+..+|+.....-....  +- ....+......... +..
T Consensus       163 ~i~~~~~~~~~~~~~L~~----~gi--~~~~~~~l~~~~-g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  234 (329)
T PRK08058        163 VVEFRPLPPESLIQRLQE----EGI--SESLATLLAGLT-NSVEEALALSEDDWFAQARALVIKLYEALHEKDLQS-FVF  234 (329)
T ss_pred             eeeCCCCCHHHHHHHHHH----cCC--ChHHHHHHHHHc-CCHHHHHHHhcCchHHHHHHHHHHHHHHHHcCCHHH-HHH
Confidence            999999999998777753    465  566666777665 67888876654211100  00 00000000001000 011


Q ss_pred             HHHHHHhc-cChhH----HHHHHHHHHHHH--hcCCCHHHHHHH---HHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCC
Q psy2281         190 TAKLIISE-QSPKK----LLEVRTRLYELL--VHSIPVNVLFKY---LLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSK  259 (287)
Q Consensus       190 l~~~i~~~-~~~~~----~~~~~~~~~~l~--~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~  259 (287)
                      +.+.+... .+.+.    +..+...+.+++  ..|.+...+..+   ....+.+.++......+++.+.+...++..+.+
T Consensus       235 ~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~~~~~~~~~~~~l~~n~n  314 (329)
T PRK08058        235 VQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVAALELILEAKRRLNSNVN  314 (329)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            11111100 01111    111222223332  223222222222   223344567788888999999999999999999


Q ss_pred             hHHHHHHHHHHHH
Q psy2281         260 PIFHIEAYVASFM  272 (287)
Q Consensus       260 ~~~~l~~~i~~~~  272 (287)
                      +.+.+|.++.++.
T Consensus       315 ~~L~le~lll~~~  327 (329)
T PRK08058        315 FQLVMEQLVLRLQ  327 (329)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999988754

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.89  E-value=3.6e-22  Score=174.46  Aligned_cols=154  Identities=29%  Similarity=0.483  Sum_probs=141.4

Q ss_pred             cCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC----------------C--------
Q psy2281           8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG----------------P--------   62 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~----------------~--------   62 (287)
                      .+|+.+++++|+..+...|...+.+|+.|| ++|+||+|+||||+++.+++.+.+                .        
T Consensus        17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~   96 (351)
T PRK09112         17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA   96 (351)
T ss_pred             CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence            689999999999999999999999999999 999999999999999999888754                0        


Q ss_pred             -----------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281          63 -----------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLIL   95 (287)
Q Consensus        63 -----------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~   95 (287)
                                                                     +++|||+|.++..++++|++.++.++.++.|++
T Consensus        97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL  176 (351)
T PRK09112         97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL  176 (351)
T ss_pred             cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence                                                           999999999999999999999999999999999


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE  163 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~  163 (287)
                      +++.+..+.++++|||..++|++++.+++..++.......+  ++++....+++.|+|+.++|+..+.
T Consensus       177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~  242 (351)
T PRK09112        177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLN  242 (351)
T ss_pred             EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHh
Confidence            99999999999999999999999999999999998654444  4688889999999999999998875

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.89  E-value=1.5e-20  Score=165.04  Aligned_cols=152  Identities=24%  Similarity=0.416  Sum_probs=136.1

Q ss_pred             cCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------C-----
Q psy2281           8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------P-----   62 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------~-----   62 (287)
                      .+|+++++++||+.+.+.|...+.+|+.|| ++|+||+|+||+|++.++++.+.+                   .     
T Consensus        13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c   92 (365)
T PRK07471         13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA   92 (365)
T ss_pred             CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence            699999999999999999999999999999 999999999999999999887631                   0     


Q ss_pred             ---------------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCc
Q psy2281          63 ---------------------------------------------------VIILNETDHLTREAQQALRRTMEKYITTC   91 (287)
Q Consensus        63 ---------------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~   91 (287)
                                                                         +++|||+|.++..++++|++.++.++.++
T Consensus        93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~  172 (365)
T PRK07471         93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS  172 (365)
T ss_pred             HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence                                                               99999999999999999999999999899


Q ss_pred             EEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q psy2281          92 RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE  163 (287)
Q Consensus        92 ~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~  163 (287)
                      .|+++++..+.+.++++|||+.+.|.+++.+++..++.+..    ...++.....++.+|+|+.++|+..++
T Consensus       173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll~  240 (365)
T PRK07471        173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLAG  240 (365)
T ss_pred             EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence            99999999999999999999999999999999999987642    222445557889999999999988775

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.89  E-value=5.7e-25  Score=181.77  Aligned_cols=205  Identities=18%  Similarity=0.167  Sum_probs=164.2

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT   89 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~   89 (287)
                      +.+...+...+...++..+++|+.  +.+.||||+||||++|+||+...++  .|++++--.+.......-.+.++.++|
T Consensus         7 ~~~~~~~~~~a~~di~l~i~~Ge~--vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ   84 (345)
T COG1118           7 NVKKRFGAFGALDDISLDIKSGEL--VALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQ   84 (345)
T ss_pred             hhhhhcccccccccceeeecCCcE--EEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEe
Confidence            334444555555567777789999  9999999999999999999999887  677776511111112222467999999


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      +..++..+|+.+|+.++++-|     -..+++.+++.++.+.++..++  +.-+.+++.++|||+.||     |+...|.
T Consensus        85 ~YALF~HmtVa~NIAFGl~~~-----~~~p~~~~~r~rv~elL~lvqL--~~la~ryP~QLSGGQrQRVALARALA~eP~  157 (345)
T COG1118          85 HYALFPHMTVADNIAFGLKVR-----KERPSEAEIRARVEELLRLVQL--EGLADRYPAQLSGGQRQRVALARALAVEPK  157 (345)
T ss_pred             chhhcccchHHhhhhhccccc-----ccCCChhhHHHHHHHHHHHhcc--cchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence            999999999999999998744     2357778888899988888777  778899999999999888     7888899


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFK  225 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~  225 (287)
                      ++++|||++++|......+...+.++.+.     +++|||.+++.+++|++..|-++.    -+|+++..
T Consensus       158 vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~  227 (345)
T COG1118         158 VLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYD  227 (345)
T ss_pred             eEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhc
Confidence            99999999999999888888888888877     889999999999999998764443    26676654

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.89  E-value=1.4e-20  Score=163.61  Aligned_cols=248  Identities=19%  Similarity=0.203  Sum_probs=172.8

Q ss_pred             HHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------------------------
Q psy2281          20 CKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------------------------   62 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------------   62 (287)
                      ....+.+...+.+|+.|| ++|+||+|+||++++.++++.+.+.                                    
T Consensus         8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~   87 (334)
T PRK07993          8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSS   87 (334)
T ss_pred             hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence            345678888889999999 8999999999999999999888542                                    


Q ss_pred             -----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC
Q psy2281          63 -----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP  119 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~  119 (287)
                                             +++||++|.|+..+.++|++.+|+|++++.|+++++.++.++++++|||+.+.|+++
T Consensus        88 I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~  167 (334)
T PRK07993         88 LGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPP  167 (334)
T ss_pred             CCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCC
Confidence                                   999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CCCcccc-cCccCccHHHHHHHHHHHHHh
Q psy2281         120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QYPFQID-QQIVEPDWKIYIRDTAKLIIS  196 (287)
Q Consensus       120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--dep~~~~-d~~~~~~~~~~i~~l~~~i~~  196 (287)
                      +.+++..++.+.   .++  +++....++.+++|+..+|+..++.-...  .+-...+ +..........+..+.    .
T Consensus       168 ~~~~~~~~L~~~---~~~--~~~~a~~~~~la~G~~~~Al~l~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~----~  238 (334)
T PRK07993        168 PEQYALTWLSRE---VTM--SQDALLAALRLSAGAPGAALALLQPERWQQREALCQALAYALPSGDWLSLLPALN----H  238 (334)
T ss_pred             CHHHHHHHHHHc---cCC--CHHHHHHHHHHcCCCHHHHHHHhcCchHHHHHHHHHHHHHHhcCCCHHHHHHHHc----c
Confidence            999999888642   244  67777788999999999988775421000  0000000 0000011111111110    1


Q ss_pred             ccChhHHHHHHHHHHHHH--hcCCCHHHHHHH---HHHHHHHhCChHHHHHHHHHHHHHhhHHhc--CCChHHHHHHHHH
Q psy2281         197 EQSPKKLLEVRTRLYELL--VHSIPVNVLFKY---LLEGLLANCDSDLKSKSIEMAAMFEHRIHK--GSKPIFHIEAYVA  269 (287)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~--~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~~l~~~i~  269 (287)
                      ......+.-+...+.+++  ..|. ...+..+   ....+.+.++.......++.+.+...++..  +.|..+.+|.++.
T Consensus       239 ~~~~~~L~~l~~~~rD~l~~~~~~-~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~N~N~~L~le~lll  317 (334)
T PRK07993        239 EQAPARLHWLATLLMDALKRQHGA-AYVTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVTGVNRELLLTDLLL  317 (334)
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCC-cceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            111111222223333433  2222 1112222   222444566777777888999999998885  9999999999999


Q ss_pred             HHHHHHHH
Q psy2281         270 SFMAMYLQ  277 (287)
Q Consensus       270 ~~~~~~~~  277 (287)
                      ++...+..
T Consensus       318 ~~~~~~~~  325 (334)
T PRK07993        318 RIEHYLQP  325 (334)
T ss_pred             HHHHHHcc
Confidence            88776544

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.88  E-value=2.9e-25  Score=179.94  Aligned_cols=182  Identities=13%  Similarity=0.096  Sum_probs=153.5

Q ss_pred             CccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE
Q psy2281          15 KLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR   92 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~   92 (287)
                      ..++...+.+.++..+.+|++  +.|.||||||||||++++++...+.  .|.+++.....+      ...+.+++|+..
T Consensus        11 ~~f~~~~vl~~i~L~v~~GEf--vsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p------~~~~~~vFQ~~~   82 (248)
T COG1116          11 KSFGGVEVLEDINLSVEKGEF--VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP------GPDIGYVFQEDA   82 (248)
T ss_pred             EEeCceEEeccceeEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC------CCCEEEEeccCc
Confidence            334445667788888899999  9999999999999999999998877  788877543111      123677888999


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      +++..|+.+|+..++.       ....+.++..+++.+.++..|+  .+....++.++|||+.||     |+...|++++
T Consensus        83 LlPW~Tv~~NV~l~l~-------~~~~~~~e~~~~a~~~L~~VgL--~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLL  153 (248)
T COG1116          83 LLPWLTVLDNVALGLE-------LRGKSKAEARERAKELLELVGL--AGFEDKYPHQLSGGMRQRVAIARALATRPKLLL  153 (248)
T ss_pred             ccchhhHHhhheehhh-------ccccchHhHHHHHHHHHHHcCC--cchhhcCccccChHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999988877       4445677777799999999998  788889999999998888     8888899999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|..++..+.+.+.++.++     +++||+.+++..+.|+++.+
T Consensus       154 lDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl  204 (248)
T COG1116         154 LDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVL  204 (248)
T ss_pred             EcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEe
Confidence            99999999999999999888888766     88999999999999998855

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.88  E-value=1.4e-21  Score=170.89  Aligned_cols=165  Identities=24%  Similarity=0.333  Sum_probs=138.2

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHh----cCC-CCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK----EGD-FPHLLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~----~g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      +|..+|||++|++++|+.+.+..+...+.    .+. .+|++|+||||+||||+++++++.+...               
T Consensus        14 ~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l   93 (328)
T PRK00080         14 EIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDL   93 (328)
T ss_pred             hhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHH
Confidence            47789999999999999999888877763    233 3459999999999999999999986432               


Q ss_pred             -----------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhccc-c
Q psy2281          63 -----------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRC-L  112 (287)
Q Consensus        63 -----------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~-~  112 (287)
                                 +++|||++.++...++.++..++...                  +...++.+++....+.++++||| .
T Consensus        94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~  173 (328)
T PRK00080         94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI  173 (328)
T ss_pred             HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence                       99999999998877777777666431                  12456667777778899999998 4


Q ss_pred             eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q psy2281         113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV  167 (287)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~  167 (287)
                      .+.|.+++.+++.+++.+.+...++.+++++...+++.|+|+.|.+...+..+..
T Consensus       174 ~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~  228 (328)
T PRK00080        174 VQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRD  228 (328)
T ss_pred             eeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999998888886543

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.88  E-value=1.3e-20  Score=163.46  Aligned_cols=242  Identities=17%  Similarity=0.208  Sum_probs=164.8

Q ss_pred             HHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------------
Q psy2281          25 HLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-----------------------------------------   62 (287)
Q Consensus        25 ~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------------   62 (287)
                      ..+.++.+|+.|| ++|+||+|+||+|+++.+++.+.+.                                         
T Consensus        11 ~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~   90 (328)
T PRK05707         11 LWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ   90 (328)
T ss_pred             HHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH
Confidence            4455566799999 9999999999999999999888641                                         


Q ss_pred             ------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHH
Q psy2281          63 ------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEI  124 (287)
Q Consensus        63 ------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~  124 (287)
                                        +++||++|.|+..++++|++.+|++++++.|+++++..+.++++++|||+.+.|.+++.+++
T Consensus        91 iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~  170 (328)
T PRK05707         91 VRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEES  170 (328)
T ss_pred             HHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHH
Confidence                              89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CCCcccccCcc--CccHHHHHHHHHHHHHhccCh
Q psy2281         125 VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QYPFQIDQQIV--EPDWKIYIRDTAKLIISEQSP  200 (287)
Q Consensus       125 ~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--dep~~~~d~~~--~~~~~~~i~~l~~~i~~~~~~  200 (287)
                      .+++.....  +  .+++....++.+++|...+|+...+.-...  .+-+..+....  .....    ++.+.+-.....
T Consensus       171 ~~~L~~~~~--~--~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~r~~~~~~l~~~~~~~~~~~----~~~~~~~k~~~~  242 (328)
T PRK05707        171 LQWLQQALP--E--SDERERIELLTLAGGSPLRALQLHEQGVREQRARVLDGVKKLLKQQQSAS----QLAESWLKVPLL  242 (328)
T ss_pred             HHHHHHhcc--c--CChHHHHHHHHHcCCCHHHHHHHHCcchHHHHHHHHHHHHHHhcCcccHH----HHHHHHccCCHH
Confidence            999876431  2  255666777889999999987665321100  00000000000  00111    122222111111


Q ss_pred             hHHHHHHHHHHHHH--hcCCCHH-HHHH---HHHHHHHHhCChHHHHHHHHHHHHHhhHHh--cCCChHHHHHHHHHHHH
Q psy2281         201 KKLLEVRTRLYELL--VHSIPVN-VLFK---YLLEGLLANCDSDLKSKSIEMAAMFEHRIH--KGSKPIFHIEAYVASFM  272 (287)
Q Consensus       201 ~~~~~~~~~~~~l~--~~~~~~~-~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~~~~l~~~i~~~~  272 (287)
                      ..+.-+...+.+++  ..|.+.. .+..   +....+.+.++.......++.+.+...++.  .+.|..+.+|.++.++.
T Consensus       243 ~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~NvN~~L~le~lll~~~  322 (328)
T PRK05707        243 LLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANLNRQLLLEALLVQWA  322 (328)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHH
Confidence            11222333333443  2332221 1111   223334456677777888888888888875  79999999999999886


Q ss_pred             HH
Q psy2281         273 AM  274 (287)
Q Consensus       273 ~~  274 (287)
                      ..
T Consensus       323 ~~  324 (328)
T PRK05707        323 GL  324 (328)
T ss_pred             HH
Confidence            54

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.88  E-value=2.5e-25  Score=190.31  Aligned_cols=203  Identities=15%  Similarity=0.141  Sum_probs=166.3

Q ss_pred             CCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhcc
Q psy2281          13 LQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYI   88 (287)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~   88 (287)
                      +...+|...+++.++..+++|++  +.|.|||||||||++|+||+...++  -|+||+.+.  +.+.     .|.+..++
T Consensus         9 v~K~yg~~~~l~~i~l~i~~Gef--~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~-----~R~iamVF   81 (338)
T COG3839           9 VRKSFGSFEVLKDVNLDIEDGEF--VVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE-----KRGIAMVF   81 (338)
T ss_pred             eEEEcCCceeeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----HCCEEEEe
Confidence            33334433356677777899999  9999999999999999999998876  888898654  3333     36799999


Q ss_pred             CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      |+..+++.+|+.+|+..+++       ....+++++.+++.++++..++  ++...+++.++|||+.||     |+...|
T Consensus        82 Q~yALyPhmtV~~Niaf~Lk-------~~~~~k~ei~~rV~eva~~L~l--~~lL~r~P~~LSGGQrQRVAlaRAlVr~P  152 (338)
T COG3839          82 QNYALYPHMTVYENIAFGLK-------LRGVPKAEIDKRVKEVAKLLGL--EHLLNRKPLQLSGGQRQRVALARALVRKP  152 (338)
T ss_pred             CCccccCCCcHHHHhhhhhh-------hCCCchHHHHHHHHHHHHHcCC--hhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence            99999999999999999998       5677899999999999999888  788888999999999988     888889


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFKYLLEGL  231 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~  231 (287)
                      +++++|||++.+|...+..+...+.++.++     |.+|||..++..+.|++..+..+.    -+|.++.......+
T Consensus       153 ~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~f  229 (338)
T COG3839         153 KVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLF  229 (338)
T ss_pred             CEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchh
Confidence            999999999999998888888888888776     789999999999999987553222    25666655443333

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.88  E-value=9.6e-25  Score=180.03  Aligned_cols=208  Identities=15%  Similarity=0.103  Sum_probs=157.9

Q ss_pred             cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE
Q psy2281          17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLI   94 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i   94 (287)
                      ++...+++.++..+.+|++  ++|.||||||||||++++++.+.+.  .|.+|+.+..+ -....+.+.+.+++|.....
T Consensus        12 y~~~~il~~ls~~i~~G~i--~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~-~~~kelAk~ia~vpQ~~~~~   88 (258)
T COG1120          12 YGGKPILDDLSFSIPKGEI--TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS-LSPKELAKKLAYVPQSPSAP   88 (258)
T ss_pred             ECCeeEEecceEEecCCcE--EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh-cCHHHHhhhEEEeccCCCCC
Confidence            4455567778888899999  9999999999999999999998865  89999977432 22456778899988876544


Q ss_pred             EEeCCCCCCcHHHhcccce-eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          95 LCANSMSQVIPAIRSRCLC-IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        95 ~~~~~~~~l~~~l~sr~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      +..++.+-+..   .|... -.|..+++++.. .+.+.++..|+  .+.+.+.+.++|||+.|+     |+...+.++++
T Consensus        89 ~~~tV~d~V~~---GR~p~~~~~~~~~~~D~~-~v~~aL~~~~~--~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL  162 (258)
T COG1120          89 FGLTVYELVLL---GRYPHLGLFGRPSKEDEE-IVEEALELLGL--EHLADRPVDELSGGERQRVLIARALAQETPILLL  162 (258)
T ss_pred             CCcEEeehHhh---cCCcccccccCCCHhHHH-HHHHHHHHhCc--HHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence            44455554433   34432 123445555444 66677777787  677888899999999998     66777789999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL-----LVHSIPVNVLFKYLLEGLLA  233 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~i~~~~~~~~~~  233 (287)
                      ||||+.+|......+.+.+.++.++     +++.|+.+.+.+++|++..+     ...|.+.+.+..+....++.
T Consensus       163 DEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vyg  237 (258)
T COG1120         163 DEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG  237 (258)
T ss_pred             CCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhC
Confidence            9999999999999999999999865     78999999999999988733     44566666666777666654

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.87  E-value=1.4e-23  Score=162.13  Aligned_cols=182  Identities=20%  Similarity=0.230  Sum_probs=158.5

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEE
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLIL   95 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~   95 (287)
                      ..+...++..+.+|++  ++++||||+||||+++.|++...++  .|.+.+.|.  +.......|++.++.++|+.+++.
T Consensus        15 ~~aL~~vs~~i~~Gef--~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~   92 (223)
T COG2884          15 REALRDVSFHIPKGEF--VFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP   92 (223)
T ss_pred             chhhhCceEeecCceE--EEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence            4467777777899999  9999999999999999999999877  777777664  344456678999999999999999


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      .-|+.+|+..+++       .-..+++++.+++...++..|+  .+.+...+.++|||+.||     |+...|.+++.||
T Consensus        93 ~~tvyeNVA~pL~-------v~G~~~~~i~~rV~~~L~~VgL--~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADE  163 (223)
T COG2884          93 DRTVYENVALPLR-------VIGKPPREIRRRVSEVLDLVGL--KHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADE  163 (223)
T ss_pred             cchHhhhhhhhhh-------ccCCCHHHHHHHHHHHHHHhcc--chhhhcCccccCchHHHHHHHHHHHccCCCeEeecC
Confidence            9999999999987       6678889999999999999999  678888899999999988     8888899999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ||..+|+.....+++++.++...    ++.||+..-+.....++..
T Consensus       164 PTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~  209 (223)
T COG2884         164 PTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA  209 (223)
T ss_pred             CCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEE
Confidence            99999999999999999888776    7899998888877666543

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.87  E-value=2.4e-20  Score=163.22  Aligned_cols=247  Identities=28%  Similarity=0.363  Sum_probs=167.2

Q ss_pred             CccCcHHHHHHHHHHHh-cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC------------------------C------
Q psy2281          15 KLDFHCKQANHLRNLLK-EGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------------P------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~-~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------------~------   62 (287)
                      +++++......+..+.. .|+.|| ++|+||+|+||||++.++++.+.+                        +      
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~   81 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP   81 (325)
T ss_pred             CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence            56777777777777775 788999 999999999999999999998872                        2      


Q ss_pred             ------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccc
Q psy2281          63 ------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL  112 (287)
Q Consensus        63 ------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~  112 (287)
                                                    +|+|||+|.++.++++++++.++.++.+++|+++++.+..+.++++|||+
T Consensus        82 s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~  161 (325)
T COG0470          82 SDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQ  161 (325)
T ss_pred             cccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcce
Confidence                                          99999999999999999999999999999999999999999999999999


Q ss_pred             eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC-ccccc---CccCc-cHHHHH
Q psy2281         113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP-FQIDQ---QIVEP-DWKIYI  187 (287)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep-~~~~d---~~~~~-~~~~~i  187 (287)
                      .++|++++......+.+           +.....+...+.||+|++++.++........ .+...   ..... ......
T Consensus       162 ~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (325)
T COG0470         162 RIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAALEIGEESIYEALLLALPESLAQLAA  230 (325)
T ss_pred             eeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHhcccHHHHHHHHHhhChhhcccccH
Confidence            99998854433333322           4567888999999999999999988776211 00000   00000 000000


Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHh----CChHHHHHHHHHHHHHhhHHhcCCChHHH
Q psy2281         188 RDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN----CDSDLKSKSIEMAAMFEHRIHKGSKPIFH  263 (287)
Q Consensus       188 ~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~g~~~~~~  263 (287)
                      .++...... ... ......+ . .+...+.............+...    ............+..+..++..+....++
T Consensus       231 ~~~~~~~~~-~~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (325)
T COG0470         231 LELLKLAEN-KFL-EALEKLW-L-LLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDGLLALIQ  306 (325)
T ss_pred             HHHHHHHHh-cch-hHHHHHH-H-HHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111111100 000 1111111 1 12233344444333333333321    23444566778888899999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2281         264 IEAYVASFMAMYL  276 (287)
Q Consensus       264 l~~~i~~~~~~~~  276 (287)
                      +..++..++....
T Consensus       307 ~~~~~~~~~~~~~  319 (325)
T COG0470         307 LENLLAELLLLQL  319 (325)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888776544

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.86  E-value=8e-23  Score=165.45  Aligned_cols=183  Identities=16%  Similarity=0.177  Sum_probs=148.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC--CCCCHHHHHHHH-HHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET--DHLTREAQQALR-RTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~--d~l~~~~~~~l~-~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+++|++  +.|.||||||||||++++.+...++  .+++++.  ..++......+| +.+++++|+..++..
T Consensus        20 ~L~~v~l~i~~Ge~--vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~   97 (226)
T COG1136          20 ALKDVNLEIEAGEF--VAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD   97 (226)
T ss_pred             ecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence            45566666789999  9999999999999999999988877  7888864  445555555554 459999999999999


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-LRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      .|+.+|+..|+.       +......+..++....++..|+  .+... .++.++|||+.||     |+...|.+++.||
T Consensus        98 ltv~ENv~lpl~-------~~~~~~~~~~~~~~~l~~~lgl--~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADE  168 (226)
T COG1136          98 LTVLENVELPLL-------IAGKSAGRRKRAAEELLEVLGL--EDRLLKKKPSELSGGQQQRVAIARALINNPKIILADE  168 (226)
T ss_pred             CCHHHHHHhHHH-------HcCCChhHHHHHHHHHHHhcCC--hhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeC
Confidence            999999887776       5555554677778888888888  55666 7799999999998     8888899999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhc
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVH  216 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~  216 (287)
                      ||..+|..+...+.+.+.++.++     +++||+...+. .+|+++.+..+
T Consensus       169 PTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG  218 (226)
T COG1136         169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDG  218 (226)
T ss_pred             ccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCC
Confidence            99999999999999999999876     78999986555 56776655443

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.86  E-value=9e-24  Score=169.85  Aligned_cols=182  Identities=15%  Similarity=0.106  Sum_probs=139.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR--LILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~   97 (287)
                      +++.++..+.+|+.  +.|+||||||||||++++++...+.  -|.+|+-..........+++.+..++|++.  +=+..
T Consensus        22 ~l~~VS~~i~~Ge~--lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~   99 (252)
T COG1124          22 ALNNVSLEIERGET--LGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR   99 (252)
T ss_pred             hhcceeEEecCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcch
Confidence            55666666689999  9999999999999999999998877  888888654333222355666777777653  21222


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      ++.+-+.++++       ....++.+.+  +.++++..|+. +....+++.++|||+.||     |+...|+++++|||+
T Consensus       100 tv~~~l~Epl~-------~~~~~~~~~~--i~~~L~~VgL~-~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt  169 (252)
T COG1124         100 TVGRILSEPLR-------PHGLSKSQQR--IAELLDQVGLP-PSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT  169 (252)
T ss_pred             hHHHHHhhhhc-------cCCccHHHHH--HHHHHHHcCCC-HHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence            22233555554       3444443333  88888999995 445668899999999999     888889999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      +.+|......+.+++.++.++     ++++|+...+..+||++..+.+
T Consensus       170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~  217 (252)
T COG1124         170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDN  217 (252)
T ss_pred             hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeC
Confidence            999999999999999999887     8899999999999999886544

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.86  E-value=1.4e-20  Score=154.08  Aligned_cols=163  Identities=25%  Similarity=0.318  Sum_probs=138.7

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      ...||++|++++||.++++.++-+++     +....|++|+||||.|||||++.+++++...                  
T Consensus        18 ~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaai   97 (332)
T COG2255          18 RSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAI   97 (332)
T ss_pred             cccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHH
Confidence            35899999999999999999998883     2345679999999999999999999998644                  


Q ss_pred             --------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhcccc-eee
Q psy2281          63 --------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRCL-CIR  115 (287)
Q Consensus        63 --------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~~-~~~  115 (287)
                              ++||||+|.+++...+.|...||.+.                  +...+|-++|....+..|++.||. ..+
T Consensus        98 Lt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~r  177 (332)
T COG2255          98 LTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQR  177 (332)
T ss_pred             HhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHHhcCCeee
Confidence                    99999999999988888888888521                  123456666777789999999995 466


Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281         116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      +.-++.+++.+++.+-....++.++++....++..|.|-.|-|...+..+--+
T Consensus       178 lefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDf  230 (332)
T COG2255         178 LEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDF  230 (332)
T ss_pred             eecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            77788999999999999999999999999999999999999999998876543

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.86  E-value=5.1e-19  Score=152.38  Aligned_cols=245  Identities=16%  Similarity=0.111  Sum_probs=166.3

Q ss_pred             HHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------------------------
Q psy2281          20 CKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------------------------   62 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------------   62 (287)
                      ....+.+...+.+|+.|| ++|+||+|+||+++++.+++.+.+.                                    
T Consensus         8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I   87 (325)
T PRK06871          8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDI   87 (325)
T ss_pred             HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCC
Confidence            456778889999999999 8999999999999999999888542                                    


Q ss_pred             ----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCC
Q psy2281          63 ----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPT  120 (287)
Q Consensus        63 ----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~  120 (287)
                                            +++||++|.|+..++++|++.+|++++++.|+++++..+.++++++|||+.+.|.+++
T Consensus        88 ~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~  167 (325)
T PRK06871         88 GVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPE  167 (325)
T ss_pred             CHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCC
Confidence                                  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CCCccccc-CccCccHHHHHHHHHHHHHhc
Q psy2281         121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QYPFQIDQ-QIVEPDWKIYIRDTAKLIISE  197 (287)
Q Consensus       121 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--dep~~~~d-~~~~~~~~~~i~~l~~~i~~~  197 (287)
                      .+++..++....   +.  ++.....+..+++|...+|+..+..-...  .+-+..+. ..........+..+.+    .
T Consensus       168 ~~~~~~~L~~~~---~~--~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~k----~  238 (325)
T PRK06871        168 EQQALDWLQAQS---SA--EISEILTALRINYGRPLLALTFLEQGLLEQRKTFLRQFWLFYRRRSPLELLPLFDK----E  238 (325)
T ss_pred             HHHHHHHHHHHh---cc--ChHHHHHHHHHcCCCHHHHHHHhhCChHHHHHHHHHHHHHHhccCCHHHHHHHHhh----c
Confidence            999999988643   22  34445667789999888877665321100  00000000 0000011111111110    0


Q ss_pred             cChhHHHHHHHHHHHHH--hcCCCHHHHHHH---HHHHHHHhCChHHHHHHHHHHHHHhhHHh--cCCChHHHHHHHHHH
Q psy2281         198 QSPKKLLEVRTRLYELL--VHSIPVNVLFKY---LLEGLLANCDSDLKSKSIEMAAMFEHRIH--KGSKPIFHIEAYVAS  270 (287)
Q Consensus       198 ~~~~~~~~~~~~~~~l~--~~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~~~~l~~~i~~  270 (287)
                      .....+.-+...+.+++  ..|.+...+..+   ....+.++++.......++.+.+...++.  .+.|..+.|+..+.+
T Consensus       239 ~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L~~~~~iN~~L~l~~~l~~  318 (325)
T PRK06871        239 LVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDLLQINAVNQELILLDGLTR  318 (325)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccccCHHHHHHHHHHH
Confidence            00111222333333443  223222222222   22334456788888889999998888885  577778877777766


Q ss_pred             HHH
Q psy2281         271 FMA  273 (287)
Q Consensus       271 ~~~  273 (287)
                      ...
T Consensus       319 ~~~  321 (325)
T PRK06871        319 LVT  321 (325)
T ss_pred             HHH
Confidence            543

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.85  E-value=1.6e-22  Score=167.72  Aligned_cols=172  Identities=15%  Similarity=0.170  Sum_probs=151.7

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALR-RTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                      ..|++  ++|.|-||||||||+|++.+...++  -|++|+.|.  ++......+| +.+..++|+..+++.-|+.+|+..
T Consensus        52 ~~GeI--fViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f  129 (386)
T COG4175          52 EEGEI--FVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF  129 (386)
T ss_pred             cCCeE--EEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence            56888  9999999999999999999988877  788898764  4555555554 459999999999999999999988


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccC
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVE  180 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~  180 (287)
                      ++.       +...++++..++..+.++..|+  ++...+++.++|||..||     |+...+.++++|||+|++|++.+
T Consensus       130 GLe-------v~Gv~~~er~~~a~~~l~~VgL--~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR  200 (386)
T COG4175         130 GLE-------VQGVPKAEREERALEALELVGL--EGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIR  200 (386)
T ss_pred             cee-------ecCCCHHHHHHHHHHHHHHcCc--hhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHH
Confidence            876       7889999999999999999998  788999999999998877     89999999999999999999999


Q ss_pred             ccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         181 PDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       181 ~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .++.+.+.++.+.     ++++|+.+++.++.+++.-+
T Consensus       201 ~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim  238 (386)
T COG4175         201 TEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM  238 (386)
T ss_pred             HHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence            9999888888776     78999999999999998733

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.84  E-value=6.1e-20  Score=148.15  Aligned_cols=129  Identities=31%  Similarity=0.493  Sum_probs=116.4

Q ss_pred             HHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC------------------------C----------------
Q psy2281          24 NHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG------------------------P----------------   62 (287)
Q Consensus        24 ~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~------------------------~----------------   62 (287)
                      +.|...+.+|+.|| ++|+||+|+||||+++.+++.+.+                        +                
T Consensus         2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i   81 (188)
T TIGR00678         2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV   81 (188)
T ss_pred             hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence            45777888999988 999999999999999999988743                        0                


Q ss_pred             -----------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHH
Q psy2281          63 -----------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIV  125 (287)
Q Consensus        63 -----------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~  125 (287)
                                       +|+|||+|.++..+++.|++.++.+++++.++++++...++.++++|||..+.|.+++.+++.
T Consensus        82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~  161 (188)
T TIGR00678        82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALL  161 (188)
T ss_pred             HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHH
Confidence                             999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHH
Q psy2281         126 SVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA  158 (287)
Q Consensus       126 ~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~a  158 (287)
                      +++...    |  +++++++.+++.++|++|+|
T Consensus       162 ~~l~~~----g--i~~~~~~~i~~~~~g~~r~~  188 (188)
T TIGR00678       162 QWLIRQ----G--ISEEAAELLLALAGGSPGAA  188 (188)
T ss_pred             HHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence            888775    5  48999999999999999874

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.84  E-value=7.4e-19  Score=151.16  Aligned_cols=138  Identities=25%  Similarity=0.353  Sum_probs=121.3

Q ss_pred             cHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------
Q psy2281          19 HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-----------------------------------   62 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------   62 (287)
                      +....+.+...+.+|+.|| ++|+||+|+||++++.++++.+.+.                                   
T Consensus         9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k   88 (319)
T PRK08769          9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK   88 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence            4567888999999999999 9999999999999999988665321                                   


Q ss_pred             ---------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceee
Q psy2281          63 ---------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIR  115 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~  115 (287)
                                                 +++||++|.|+..++++|++++|+++.++.||++++..+.++++++|||+.+.
T Consensus        89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~  168 (319)
T PRK08769         89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLE  168 (319)
T ss_pred             ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEee
Confidence                                       99999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q psy2281         116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC  162 (287)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l  162 (287)
                      |.+++.++...++..    .|+  ++.....+..+++|...+|+..+
T Consensus       169 ~~~~~~~~~~~~L~~----~~~--~~~~a~~~~~l~~G~p~~A~~~~  209 (319)
T PRK08769        169 FKLPPAHEALAWLLA----QGV--SERAAQEALDAARGHPGLAAQWL  209 (319)
T ss_pred             CCCcCHHHHHHHHHH----cCC--ChHHHHHHHHHcCCCHHHHHHHh
Confidence            999999999888864    355  55556677899999998887655

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.84  E-value=1.6e-19  Score=156.71  Aligned_cols=156  Identities=23%  Similarity=0.325  Sum_probs=131.0

Q ss_pred             CCCCCccCcHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----------------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------   62 (287)
                      ++|++++|+.+.++.+..++.     .+..+|++|+||||+|||++++++++.+..+                       
T Consensus         1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   80 (305)
T TIGR00635         1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLE   80 (305)
T ss_pred             CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcc
Confidence            478999999999998888885     3445669999999999999999999987533                       


Q ss_pred             ---EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhcccc-eeecCCCC
Q psy2281          63 ---VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRCL-CIRIPAPT  120 (287)
Q Consensus        63 ---~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~~~  120 (287)
                         +++|||++.++...++.|+..++...                  +...++.+++....+.++++|||. .+.|.+++
T Consensus        81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~  160 (305)
T TIGR00635        81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYT  160 (305)
T ss_pred             cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCC
Confidence               89999999999887777777665322                  124456666777788999999994 57899999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       121 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      .+++.+++.+.+...++.+++++...+++.++|+.|.+...+..+.
T Consensus       161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~  206 (305)
T TIGR00635       161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVR  206 (305)
T ss_pred             HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999888887654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>KOG1969|consensus

Probab=99.83  E-value=2.2e-19  Score=163.19  Aligned_cols=169  Identities=23%  Similarity=0.350  Sum_probs=135.9

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHh--------------------------------cCCCCc--EEEeCCCCCcH
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK--------------------------------EGDFPH--LLFYGPSGAGK   48 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~--------------------------------~g~~~~--~~l~Gp~G~GK   48 (287)
                      +|++||+|+.|.++.+.+.+...+..|++                                .++.+.  ++|+||||.||
T Consensus       260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK  339 (877)
T KOG1969|consen  260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK  339 (877)
T ss_pred             eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence            79999999999999998776655555541                                111222  78999999999


Q ss_pred             HHHHHHHHHHhCCC------------------------------------EEEEeCCCCCCHHHHHHHHHHHHh------
Q psy2281          49 KTRIMALLKELYGP------------------------------------VIILNETDHLTREAQQALRRTMEK------   86 (287)
Q Consensus        49 Ttl~~~l~~~~~~~------------------------------------~i~ide~d~l~~~~~~~l~~~i~~------   86 (287)
                      ||||+.+|+..+..                                    .+++||+|.-...+.+.++..+..      
T Consensus       340 TTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~  419 (877)
T KOG1969|consen  340 TTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQAT  419 (877)
T ss_pred             hHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhh
Confidence            99999999987644                                    889999998766666666665541      


Q ss_pred             ccCC---------------cEEEEEeCCCCC-CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2281          87 YITT---------------CRLILCANSMSQ-VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ  150 (287)
Q Consensus        87 ~~~~---------------~~~i~~~~~~~~-l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  150 (287)
                      ..+.               ..+|++||+.-. -+.+++.-+.++.|.+++...+.++|+.+|.++|+..+..++..++++
T Consensus       420 Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el  499 (877)
T KOG1969|consen  420 GKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADSKALNALCEL  499 (877)
T ss_pred             cCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Confidence            1222               357888888642 345677777889999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHHhhcCCC
Q psy2281         151 SDRNLRRAILMCEASKVQQYP  171 (287)
Q Consensus       151 s~G~~r~al~~l~~~~~~dep  171 (287)
                      +.+|+|.++|.+|.+....+.
T Consensus       500 ~~~DIRsCINtLQfLa~~~~r  520 (877)
T KOG1969|consen  500 TQNDIRSCINTLQFLASNVDR  520 (877)
T ss_pred             hcchHHHHHHHHHHHHHhccc
Confidence            999999999999999887654

>TIGR00602 rad24 checkpoint protein rad24

Probab=99.83  E-value=7e-20  Score=169.71  Aligned_cols=168  Identities=26%  Similarity=0.364  Sum_probs=127.0

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-----EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-----LLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-----~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      .+|++||||+++++++++++.+..+..++.....+.     ++|+||+||||||+++++++.+...              
T Consensus        72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~  151 (637)
T TIGR00602        72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK  151 (637)
T ss_pred             CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence            479999999999999999999999998886543322     8999999999999999998765310              


Q ss_pred             ----------------------------------------------EEEEeCCCCCCHHHHHHHHHHHH-hc--cCCcEE
Q psy2281          63 ----------------------------------------------VIILNETDHLTREAQQALRRTME-KY--ITTCRL   93 (287)
Q Consensus        63 ----------------------------------------------~i~ide~d~l~~~~~~~l~~~i~-~~--~~~~~~   93 (287)
                                                                    +|+|||++.+.......+...+. ..  ...+.+
T Consensus       152 ~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pL  231 (637)
T TIGR00602       152 NDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPL  231 (637)
T ss_pred             cccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceE
Confidence                                                          88999998765433333333333 11  223457


Q ss_pred             EEEeCCCCC---------------CcHHHhc--ccceeecCCCCHHHHHHHHHHHHHHhCCC------C-CHHHHHHHHH
Q psy2281          94 ILCANSMSQ---------------VIPAIRS--RCLCIRIPAPTHEEIVSVLTNICKKEGLT------I-PPEFALRLAQ  149 (287)
Q Consensus        94 i~~~~~~~~---------------l~~~l~s--r~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~-~~~~~~~l~~  149 (287)
                      |+++|....               +.+++++  |+..+.|++++...+.+.|.++++.++..      + +++++..++.
T Consensus       232 I~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~  311 (637)
T TIGR00602       232 VFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ  311 (637)
T ss_pred             EEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH
Confidence            777663211               2267887  55679999999999999999999987432      2 3578899999


Q ss_pred             HcCCcHHHHHHHHHHHhhcC
Q psy2281         150 QSDRNLRRAILMCEASKVQQ  169 (287)
Q Consensus       150 ~s~G~~r~al~~l~~~~~~d  169 (287)
                      .++||+|.||+.++.++...
T Consensus       312 ~s~GDiRsAIn~LQf~~~~~  331 (637)
T TIGR00602       312 GCSGDIRSAINSLQFSSSKS  331 (637)
T ss_pred             hCCChHHHHHHHHHHHHhcC
Confidence            99999999999999887643

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.83  E-value=1.8e-19  Score=166.19  Aligned_cols=165  Identities=24%  Similarity=0.343  Sum_probs=137.9

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--------C-------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--------Y-------------   60 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--------~-------------   60 (287)
                      .+|.+||||++|++++|+....+.+...+.....+|++|+||+|||||++++++....        .             
T Consensus        53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~  132 (531)
T TIGR02902        53 EPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTA  132 (531)
T ss_pred             chHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccc
Confidence            4899999999999999999999988877766666679999999999999999985320        0             


Q ss_pred             -------------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHhc----------
Q psy2281          61 -------------------------------------------GPVIILNETDHLTREAQQALRRTMEKY----------   87 (287)
Q Consensus        61 -------------------------------------------~~~i~ide~d~l~~~~~~~l~~~i~~~----------   87 (287)
                                                                 +.+++|||++.++...|+.|++.++.-          
T Consensus       133 ~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~  212 (531)
T TIGR02902       133 RFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYN  212 (531)
T ss_pred             cCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeecccccc
Confidence                                                       018999999999999999999888641          


Q ss_pred             ------------------cCCcEEEEEeC-CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2281          88 ------------------ITTCRLILCAN-SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA  148 (287)
Q Consensus        88 ------------------~~~~~~i~~~~-~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  148 (287)
                                        +.+.+++.+++ .++.+.+++++||..+.|++++.+++..+++..+++.++.+++++++.+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~  292 (531)
T TIGR02902       213 SENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIV  292 (531)
T ss_pred             ccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence                              12345665554 45779999999999999999999999999999999999999999999888


Q ss_pred             HHcCCcHHHHHHHHHHHhh
Q psy2281         149 QQSDRNLRRAILMCEASKV  167 (287)
Q Consensus       149 ~~s~G~~r~al~~l~~~~~  167 (287)
                      .++. +.|.+.+.++.+..
T Consensus       293 ~y~~-n~Rel~nll~~Aa~  310 (531)
T TIGR02902       293 KYAS-NGREAVNIVQLAAG  310 (531)
T ss_pred             Hhhh-hHHHHHHHHHHHHH
Confidence            7765 78999999887653

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=1.1e-21  Score=157.37  Aligned_cols=186  Identities=18%  Similarity=0.132  Sum_probs=154.4

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT   89 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~   89 (287)
                      .+..-+|.+.++..++..+++|++  +.|.||||+||||+.|.|.+.+.++  -|-+++.+. +    ......+++.|.
T Consensus         7 ~vtK~Fg~k~av~~isf~v~~G~i--~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~-~----~~~~~rIGyLPE   79 (300)
T COG4152           7 GVTKSFGDKKAVDNISFEVPPGEI--FGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL-S----QEIKNRIGYLPE   79 (300)
T ss_pred             cchhccCceeeecceeeeecCCeE--EEeecCCCCCccchHHHHhccCCccCceEEEcCcch-h----hhhhhhcccChh
Confidence            344556667778888888899999  9999999999999999999999876  777887652 2    223456888888


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      ...+..-+++.+.+..--       +++.++..++.+.+...+++.++  .....+.+-++|.|+.|+     ++...|.
T Consensus        80 ERGLy~k~tv~dql~yla-------~LkGm~~~e~~~~~~~wLer~~i--~~~~~~kIk~LSKGnqQKIQfisaviHePe  150 (300)
T COG4152          80 ERGLYPKMTVEDQLKYLA-------ELKGMPKAEIQKKLQAWLERLEI--VGKKTKKIKELSKGNQQKIQFISAVIHEPE  150 (300)
T ss_pred             hhccCccCcHHHHHHHHH-------HhcCCcHHHHHHHHHHHHHhccc--cccccchHHHhhhhhhHHHHHHHHHhcCCC
Confidence            777776666665544322       26788999999999999998887  677788899999999988     7777899


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|||+|++|+.+.+.+.+.++++.+.    ++++|.++.++++||+++.+
T Consensus       151 LlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL  203 (300)
T COG4152         151 LLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML  203 (300)
T ss_pred             EEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhee
Confidence            99999999999999999999999999887    88999999999999999855

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=99.82  E-value=1.4e-17  Score=140.47  Aligned_cols=221  Identities=19%  Similarity=0.228  Sum_probs=154.9

Q ss_pred             HHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------------------------------
Q psy2281          21 KQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------------------------------   62 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------------------------   62 (287)
                      ...+.+...+++|+.|| ++|+||+|+||++++..++..+.+.                                     
T Consensus         4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l   83 (290)
T PRK05917          4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI   83 (290)
T ss_pred             HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence            34578888899999999 9999999999999999998887541                                     


Q ss_pred             --------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHH
Q psy2281          63 --------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVL  128 (287)
Q Consensus        63 --------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l  128 (287)
                                    +++|+++|.++.+++++|++.+|+|++++.|+++++..+.++++++|||+.+.|+++         
T Consensus        84 ~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~---------  154 (290)
T PRK05917         84 KKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME---------  154 (290)
T ss_pred             HHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch---------
Confidence                          999999999999999999999999999999999999999999999999999999875         


Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHcCCcHH--HHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccChhHHHHH
Q psy2281         129 TNICKKEGLTIPPEFALRLAQQSDRNLR--RAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEV  206 (287)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r--~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~  206 (287)
                          +..+  ++++....++.+++|++.  .+...++.      ..   +     ......++-.+.++.-    -..-+
T Consensus       155 ----~~~~--i~~~~~~~l~~~~~g~~~~~~~~~~l~~------~~---~-----~~~~~~re~~~~~L~~----ll~~~  210 (290)
T PRK05917        155 ----EKTL--VSKEDIAYLIGYAQGKESVTEVGQIVKG------SA---D-----TDKQVLRDKTKAMLEV----LLQLF  210 (290)
T ss_pred             ----hccC--CCHHHHHHHHHHhCCChhHHHHHHHHhc------ch---H-----HHHHHHHHHHHHHHHH----HHHHH
Confidence                1223  478888889999999885  22222211      00   0     0000011111111000    11112


Q ss_pred             HHHHHHHHhcCCCHH-HHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHH
Q psy2281         207 RTRLYELLVHSIPVN-VLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ  277 (287)
Q Consensus       207 ~~~~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~  277 (287)
                      +|.+  ++..|.+.. .+..+....+.+ .+......+++.+.+...++..+++..+.++.++.++...+++
T Consensus       211 RD~l--~~~~~~~~~~l~~~d~~~~l~~-~~~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l~~~~~~  279 (290)
T PRK05917        211 RDRF--LLALKVPASALAYPDLLKEILT-LPVLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQLWSLKNR  279 (290)
T ss_pred             HHHH--HHHcCCchhhhccHHHHHHHHh-cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            2222  133444433 223333333322 2222256788889999999999999999999999999887765

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.82  E-value=7.1e-22  Score=162.77  Aligned_cols=184  Identities=16%  Similarity=0.132  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEe
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCA   97 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~   97 (287)
                      .+.+.++..+.+|+.  ++++|||||||||+++.+++.+.+.  .|.+|+.+.-.......+++.++.++|++. .++..
T Consensus        18 ~~l~~v~~~i~~Ge~--~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~   95 (235)
T COG1122          18 AALKDVSLEIEKGER--VLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP   95 (235)
T ss_pred             eeeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence            344556666688988  9999999999999999999999877  778998774433445678888999998874 45555


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      ++.+.+..+..       ..+.+.+++.+++..+++..|+  .+...+.+..+|||+.||     ++...|.++++||||
T Consensus        96 tV~~evafg~~-------n~g~~~~e~~~rv~~~l~~vgl--~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt  166 (235)
T COG1122          96 TVEDEVAFGLE-------NLGLPREEIEERVAEALELVGL--EELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPT  166 (235)
T ss_pred             cHHHHHhhchh-------hcCCCHHHHHHHHHHHHHHcCc--hhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence            66677777666       4467777899999999999998  566778899999999999     777889999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      +++|+.....+.+.+.++..+     |+.+|+.+.+..++++++.+-.
T Consensus       167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~  214 (235)
T COG1122         167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDD  214 (235)
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEEC
Confidence            999999999999999999766     7799999999999999885533

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=99.82  E-value=3e-17  Score=141.11  Aligned_cols=137  Identities=18%  Similarity=0.342  Sum_probs=120.1

Q ss_pred             cHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------
Q psy2281          19 HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-----------------------------------   62 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------   62 (287)
                      +....+.+...+.+|+.|| ++|.||.|+||+++++.+++.+.+.                                   
T Consensus         8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~   87 (319)
T PRK06090          8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS   87 (319)
T ss_pred             HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence            3456778888899999999 9999999999999999999887532                                   


Q ss_pred             -----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC
Q psy2281          63 -----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP  119 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~  119 (287)
                                             +++|+++|.|+..+.++|++++|+|++++.||++++..+.++++++|||+.+.|+++
T Consensus        88 I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~  167 (319)
T PRK06090         88 ITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPP  167 (319)
T ss_pred             CCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCC
Confidence                                   999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q psy2281         120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE  163 (287)
Q Consensus       120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~  163 (287)
                      +.+++..++..    .|+  +  ....+..+++|+..+|+..+.
T Consensus       168 ~~~~~~~~L~~----~~~--~--~~~~~l~l~~G~p~~A~~~~~  203 (319)
T PRK06090        168 STAQAMQWLKG----QGI--T--VPAYALKLNMGSPLKTLAMMK  203 (319)
T ss_pred             CHHHHHHHHHH----cCC--c--hHHHHHHHcCCCHHHHHHHhC
Confidence            99999988864    354  2  235667899999998877653

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.82  E-value=7.3e-23  Score=164.73  Aligned_cols=198  Identities=17%  Similarity=0.118  Sum_probs=159.4

Q ss_pred             CCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCC
Q psy2281          13 LQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITT   90 (287)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~   90 (287)
                      +..-+|.-.+++.++..++.|++  +.|+||||+||||+.+++.+.+.++  .|++++.|.-........+..+...+|+
T Consensus        10 l~k~FGGl~Al~~Vsl~v~~Gei--~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~   87 (250)
T COG0411          10 LSKRFGGLTAVNDVSLEVRPGEI--VGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI   87 (250)
T ss_pred             ceeecCCEEEEeceeEEEcCCeE--EEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence            33444544566677777789999  9999999999999999999999887  8888887643333333445567888999


Q ss_pred             cEEEEEeCCCCCCcHHHhcccc---eeecCCC--CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHH
Q psy2281          91 CRLILCANSMSQVIPAIRSRCL---CIRIPAP--THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AIL  160 (287)
Q Consensus        91 ~~~i~~~~~~~~l~~~l~sr~~---~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~  160 (287)
                      .+++...|+.+|+.-+...+..   .+..+..  ..++..+....+++..|+  ++.+.+...++|+|++|+     |++
T Consensus        88 ~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL--~~~a~~~A~~LsyG~qR~LEIArALa  165 (250)
T COG0411          88 TRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL--GELADRPAGNLSYGQQRRLEIARALA  165 (250)
T ss_pred             ccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCC--chhhcchhhcCChhHhHHHHHHHHHh
Confidence            9999999999998877654421   1222222  567888899999999998  777888888899999888     999


Q ss_pred             HHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         161 MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       161 ~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ..|+++++|||..++.+.....+.+.|.++.+.     ++++|+++.+..++|+++.+-
T Consensus       166 ~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~  224 (250)
T COG0411         166 TQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLN  224 (250)
T ss_pred             cCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEecc
Confidence            999999999999999998888899999999875     679999999999999998663

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.82  E-value=1.9e-23  Score=162.61  Aligned_cols=194  Identities=17%  Similarity=0.183  Sum_probs=154.7

Q ss_pred             CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281          11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI   88 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~   88 (287)
                      .++.+.++...++..++..+++|++  +.+.||||+||||....+.+...++  -|++|+.|.-.-.--..-+..+++.+
T Consensus         8 ~~l~K~y~kr~Vv~~Vsl~v~~GEi--VGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLp   85 (243)
T COG1137           8 ENLAKSYKKRKVVNDVSLEVNSGEI--VGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLP   85 (243)
T ss_pred             hhhhHhhCCeeeeeeeeEEEcCCcE--EEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccc
Confidence            4555666666777788888899999  9999999999999999999988877  89999888532222223345689999


Q ss_pred             CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      |.+.++--.++.+|+...+.-|     .+.....+....+...++..++  ..-..+.-..+|||+.||     |+...|
T Consensus        86 QE~SIFr~LtV~dNi~~vlE~~-----~~d~~~~~~~~~l~~LL~ef~i--~hlr~~~a~sLSGGERRR~EIARaLa~~P  158 (243)
T COG1137          86 QEASIFRKLTVEDNIMAVLEIR-----EKDLKKAERKEELDALLEEFHI--THLRDSKAYSLSGGERRRVEIARALAANP  158 (243)
T ss_pred             ccchHhhcCcHHHHHHHHHhhh-----hcchhHHHHHHHHHHHHHHhch--HHHhcCcccccccchHHHHHHHHHHhcCC
Confidence            9998888888888887665522     2233344666678888888777  556666677899999998     888999


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +.+++||||++.|+....++.+++..+.+.    ++..|+..+...++|+.|-+
T Consensus       159 ~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi  212 (243)
T COG1137         159 KFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYII  212 (243)
T ss_pred             CEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEE
Confidence            999999999999999999999999999877    66889999999999998844

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.81  E-value=5.4e-22  Score=170.04  Aligned_cols=187  Identities=18%  Similarity=0.122  Sum_probs=151.5

Q ss_pred             CCCCccC-cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281          12 NLQKLDF-HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI   88 (287)
Q Consensus        12 ~~~~~~~-~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~   88 (287)
                      ++...++ ...+++.++..+++|++  ++|.||||+||||+++++++...+.  .|.+++.+....  ...+++.+++++
T Consensus         9 ~l~k~~~~~~~~l~~vs~~i~~Gei--~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~~~~igy~~   84 (293)
T COG1131           9 NLTKKYGGDKTALDGVSFEVEPGEI--FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKVRRRIGYVP   84 (293)
T ss_pred             ceEEEeCCCCEEEeceeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHHHhheEEEc
Confidence            4444555 35667778888899999  9999999999999999999999876  788888764432  445677899999


Q ss_pred             CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      ++..+....|..+++...-.       +...+.+...+.+.++++..++  ++...+.+..+|+|+.||     |+...|
T Consensus        85 ~~~~~~~~lT~~e~l~~~~~-------l~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~lS~G~kqrl~ia~aL~~~P  155 (293)
T COG1131          85 QEPSLYPELTVRENLEFFAR-------LYGLSKEEAEERIEELLELFGL--EDKANKKVRTLSGGMKQRLSIALALLHDP  155 (293)
T ss_pred             cCCCCCccccHHHHHHHHHH-------HhCCChhHHHHHHHHHHHHcCC--chhhCcchhhcCHHHHHHHHHHHHHhcCC
Confidence            99888888888887665433       4444445666788888888898  444467789999998888     777778


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~  211 (287)
                      .++++|||++++|+.....+.+.+.++.++     ++++|..+++..+||++.
T Consensus       156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~  208 (293)
T COG1131         156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVI  208 (293)
T ss_pred             CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEE
Confidence            999999999999999999999999999875     679999999999999776

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.81  E-value=4.3e-21  Score=149.71  Aligned_cols=179  Identities=16%  Similarity=0.162  Sum_probs=145.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..++.|++  +.+.||||+||||+++.|+..+.|+  .+.+|++|....  ....++.++-.+....+.--.|.
T Consensus        17 AvrdVSF~ae~Gei--~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~--p~~vrr~IGVl~~e~glY~RlT~   92 (245)
T COG4555          17 AVRDVSFEAEEGEI--TGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD--PSFVRRKIGVLFGERGLYARLTA   92 (245)
T ss_pred             hhhheeEEeccceE--EEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC--hHHHhhhcceecCCcChhhhhhH
Confidence            55666666789999  9999999999999999999999888  899999985432  23456666665555555555556


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+|+..--+       +..++..++.+++.+..+..++  .+...++..++|.|..++     |+...|+++++|||+++
T Consensus        93 rEnl~~Fa~-------L~~l~~~~~kari~~l~k~l~l--~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sG  163 (245)
T COG4555          93 RENLKYFAR-------LNGLSRKEIKARIAELSKRLQL--LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSG  163 (245)
T ss_pred             HHHHHHHHH-------HhhhhhhHHHHHHHHHHHHhCh--HHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCC
Confidence            666544222       5678888999999999988888  678889999999998777     88888999999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.    ++++|.+.+++.+||++..+
T Consensus       164 LDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivl  206 (245)
T COG4555         164 LDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVL  206 (245)
T ss_pred             ccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEE
Confidence            9998888888888888764    88999999999999998744

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.81  E-value=3.4e-17  Score=142.08  Aligned_cols=199  Identities=17%  Similarity=0.186  Sum_probs=129.7

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH
Q psy2281          63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE  142 (287)
Q Consensus        63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  142 (287)
                      +++||++|.|+..+.++|++.+|++++++.|+++++.++.++++++|||+.+.|++++.+++..++...    ++  ++.
T Consensus       135 V~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~  208 (342)
T PRK06964        135 VVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA  208 (342)
T ss_pred             EEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH
Confidence            889999999999999999999999999999999999999999999999999999999999999888763    44  332


Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHh--hcCCCcccccCccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHh--cCC
Q psy2281         143 FALRLAQQSDRNLRRAILMCEASK--VQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLV--HSI  218 (287)
Q Consensus       143 ~~~~l~~~s~G~~r~al~~l~~~~--~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~--~~~  218 (287)
                        +.+..+++|...+|+..+..-.  ....-...+.......+.    .+.+.+-.......+.-+...+.+++.  .|.
T Consensus       209 --~~~l~~~~Gsp~~Al~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~  282 (342)
T PRK06964        209 --DALLAEAGGAPLAALALASDENRPLRDWTLGQLAAGAACDAF----ACAETLQKLPVPAVLGWLQRWLYDLLAQRLAG  282 (342)
T ss_pred             --HHHHHHcCCCHHHHHHHHCCChHHHHHHHHHHHhccCchhHH----HHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCC
Confidence              3356789999988876652100  000000000000111111    222222111111122223333445432  232


Q ss_pred             CHHHHHH---HHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         219 PVNVLFK---YLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       219 ~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      ++ .+..   +....+.+.++...+...++.+.+....+..+.+..+.+|.++.++...
T Consensus       283 ~~-~~~~d~~~~l~~~a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~~  340 (342)
T PRK06964        283 AP-RYFPAQRAALARCAAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYREL  340 (342)
T ss_pred             Cc-eecHhHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHHH
Confidence            22 2211   2333344567777788888888888888889999999999999877543

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.81  E-value=2.4e-19  Score=140.66  Aligned_cols=103  Identities=45%  Similarity=0.675  Sum_probs=88.5

Q ss_pred             CcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------------------------
Q psy2281          18 FHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------------------------   62 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------------   62 (287)
                      ||+.+.+.|...+.+|+.|| ++|+||+|+||+++++++++.+.+.                                  
T Consensus         1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~   80 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK   80 (162)
T ss_dssp             S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred             CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence            68889999999999999999 8999999999999999999988643                                  


Q ss_pred             ------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCC
Q psy2281          63 ------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPA  118 (287)
Q Consensus        63 ------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~  118 (287)
                                              +++||++|.++.+++++|++.||+++.++.|+++++..++++++++|||+.++|++
T Consensus        81 ~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~  160 (162)
T PF13177_consen   81 SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP  160 (162)
T ss_dssp             SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence                                    99999999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q psy2281         119 PT  120 (287)
Q Consensus       119 ~~  120 (287)
                      ++
T Consensus       161 ls  162 (162)
T PF13177_consen  161 LS  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            53

...

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=99.80  E-value=1.9e-18  Score=157.51  Aligned_cols=166  Identities=28%  Similarity=0.445  Sum_probs=123.9

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhc---CCCC--cEEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE---GDFP--HLLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      .+|+|||+|++++++..++..++.++.|++.   +..+  .++|+||+||||||++++|++++...              
T Consensus         7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~   86 (519)
T PF03215_consen    7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESD   86 (519)
T ss_pred             CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccc
Confidence            4899999999999999999999999999854   2221  27899999999999999999998644              


Q ss_pred             ------------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhc--cCCc-
Q psy2281          63 ------------------------------------------------VIILNETDHLTREAQQALRRTMEKY--ITTC-   91 (287)
Q Consensus        63 ------------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~--~~~~-   91 (287)
                                                                      +|+|+|.+.+.......|+..+..+  ...+ 
T Consensus        87 ~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~~  166 (519)
T PF03215_consen   87 NQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRCL  166 (519)
T ss_pred             cccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCCC
Confidence                                                            8999998875544334444444332  1223 


Q ss_pred             EEEEEeCCCC-----------------CCcHHHhcc--cceeecCCCCHHHHHHHHHHHHHHh-----CC-CCC--HHHH
Q psy2281          92 RLILCANSMS-----------------QVIPAIRSR--CLCIRIPAPTHEEIVSVLTNICKKE-----GL-TIP--PEFA  144 (287)
Q Consensus        92 ~~i~~~~~~~-----------------~l~~~l~sr--~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-~~~--~~~~  144 (287)
                      ++|++.+..+                 -+.+.+...  +..+.|++....-+.+.|.+++..+     +. ..+  ...+
T Consensus       167 PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l  246 (519)
T PF03215_consen  167 PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVL  246 (519)
T ss_pred             CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHH
Confidence            4555544211                 123345443  4679999999999999999999988     32 222  3458


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhh
Q psy2281         145 LRLAQQSDRNLRRAILMCEASKV  167 (287)
Q Consensus       145 ~~l~~~s~G~~r~al~~l~~~~~  167 (287)
                      +.+++.|+||+|.|++.+|.++.
T Consensus       247 ~~I~~~s~GDIRsAIn~LQf~~~  269 (519)
T PF03215_consen  247 DSIAESSNGDIRSAINNLQFWCL  269 (519)
T ss_pred             HHHHHhcCchHHHHHHHHHHHhc
Confidence            89999999999999999999998

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.80  E-value=9.1e-21  Score=165.45  Aligned_cols=181  Identities=14%  Similarity=0.129  Sum_probs=145.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +++.++..+.+|++  +.|.||||+|||||+++|++...++  .|.+|+.+.  ++......+++.+.+++|+..++...
T Consensus        20 ~L~~vsl~i~~Gei--~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~   97 (343)
T TIGR02314        20 ALNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR   97 (343)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence            45566666789999  9999999999999999999988766  788887653  23333344566788888887776666


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..++.       ....+..+..+.+.+.++..|+  ++....++.++|+|+.||     |+...|+++++|||+
T Consensus        98 tv~eni~~~~~-------~~~~~~~~~~~~v~e~l~~vgL--~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPt  168 (343)
T TIGR02314        98 TVFGNVALPLE-------LDNTPKDEIKRKVTELLALVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEAT  168 (343)
T ss_pred             cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence            77777766543       2334566777788888888888  566778889999999988     788889999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|+.....+.+.+.++.++     ++++|+.+.+.+++|++..+
T Consensus       169 s~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl  214 (343)
T TIGR02314       169 SALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVI  214 (343)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999999998764     77999999999999988744

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.79  E-value=6.8e-18  Score=140.61  Aligned_cols=155  Identities=15%  Similarity=0.257  Sum_probs=122.7

Q ss_pred             CCCCcc--CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------------C
Q psy2281          12 NLQKLD--FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------------------------P   62 (287)
Q Consensus        12 ~~~~~~--~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------------~   62 (287)
                      +|++++  .+..+...+..+......++++|+||+|||||||++++++....                           +
T Consensus        20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d   99 (235)
T PRK08084         20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLS   99 (235)
T ss_pred             CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCC
Confidence            567766  36677888888876555556999999999999999999876431                           1


Q ss_pred             EEEEeCCCCCCH--HHHHHHHHHHHhccC--CcEEEEEeCCCC----CCcHHHhccc---ceeecCCCCHHHHHHHHHHH
Q psy2281          63 VIILNETDHLTR--EAQQALRRTMEKYIT--TCRLILCANSMS----QVIPAIRSRC---LCIRIPAPTHEEIVSVLTNI  131 (287)
Q Consensus        63 ~i~ide~d~l~~--~~~~~l~~~i~~~~~--~~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~~~~~~~~~l~~~  131 (287)
                      +++|||++.+..  ..+..+...+....+  ...++++++.+.    .+.+.++||+   .++.+.+|+.+++.+++++.
T Consensus       100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~  179 (235)
T PRK08084        100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLR  179 (235)
T ss_pred             EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHH
Confidence            789999998753  334555555554432  346777777653    2578999999   68999999999999999998


Q ss_pred             HHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      +...|+.+++++.+++++.+.||.|.++..++.+.
T Consensus       180 a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  214 (235)
T PRK08084        180 ARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLD  214 (235)
T ss_pred             HHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence            88889999999999999999999999998888754

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.79  E-value=1.1e-20  Score=155.80  Aligned_cols=180  Identities=18%  Similarity=0.161  Sum_probs=133.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+++.+.-  .......+++.+.+++++..++...
T Consensus        18 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   95 (216)
T TIGR00960        18 ALDNLNFHITKGEM--VFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR   95 (216)
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence            44556666688999  9999999999999999999987654  7778875421  1222233566788888887666555


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..+..       +.....++..+.+...++..++  ++...+.+.++|+|+.||     |+...+.++++|||+
T Consensus        96 tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt  166 (216)
T TIGR00960        96 TVYDNVAFPLR-------IIGVPPRDANERVSAALEKVGL--EGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPT  166 (216)
T ss_pred             cHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            66666654432       1223344555667778888887  555666778999999988     677778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      +++|......+.+.+.++.+.    ++++|+.+.+..++++++.
T Consensus       167 ~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~  210 (216)
T TIGR00960       167 GNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLT  210 (216)
T ss_pred             CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            999999998888888888653    7799999988888877653

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.9e-21  Score=159.68  Aligned_cols=180  Identities=13%  Similarity=0.093  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+.+|++  +.+.||||+|||||++++++.+.+.  .|.+.+.+.-..  +.  ...++|+||...+-  .+
T Consensus        18 ~vl~~i~l~v~~G~~--~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~--~~--~~~IgYVPQ~~~~d--~~   89 (254)
T COG1121          18 PVLEDISLSVEKGEI--TALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR--RK--RLRIGYVPQKSSVD--RS   89 (254)
T ss_pred             eeeeccEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc--cc--CCeEEEcCcccccC--CC
Confidence            467777777899999  9999999999999999999988766  566655432110  10  24588888865221  11


Q ss_pred             CCCCCcHHHhc-ccce-eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          99 SMSQVIPAIRS-RCLC-IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        99 ~~~~l~~~l~s-r~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      -+-.+.+-+.. |... -.|..++.++ .+.+.+.++..|+  .+...+.+.++|||+.||     |+...|+++++|||
T Consensus        90 fP~tV~d~V~~g~~~~~g~~~~~~~~d-~~~v~~aL~~Vgm--~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP  166 (254)
T COG1121          90 FPITVKDVVLLGRYGKKGWFRRLNKKD-KEKVDEALERVGM--EDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEP  166 (254)
T ss_pred             CCcCHHHHHHccCcccccccccccHHH-HHHHHHHHHHcCc--hhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCC
Confidence            22222221111 1111 1245566666 7788889999998  678889999999999999     77888899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      +++.|+.+...+.+++.++.++    ++++||...+...+|++.
T Consensus       167 ~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi  210 (254)
T COG1121         167 FTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVI  210 (254)
T ss_pred             cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEE
Confidence            9999999999999999999886    779999999999999876

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.78  E-value=1.8e-20  Score=143.79  Aligned_cols=204  Identities=17%  Similarity=0.129  Sum_probs=158.3

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC--------CCC----CCHHHH
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNE--------TDH----LTREAQ   77 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide--------~d~----l~~~~~   77 (287)
                      .+.+-+|..++.+-++...++|..  +.|+|.+|+||||+++|+.-...|.  .|.+.+        .+-    ......
T Consensus        11 dlHK~~G~~eVLKGvSL~A~~GdV--isIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~   88 (256)
T COG4598          11 DLHKRYGEHEVLKGVSLQANAGDV--ISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQL   88 (256)
T ss_pred             HHHhhcccchhhcceeeecCCCCE--EEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence            344445666677777777788888  9999999999999999998776655  333332        111    123445


Q ss_pred             HHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281          78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR  157 (287)
Q Consensus        78 ~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~  157 (287)
                      +.++..++.++|+..+.-.++..+|++++-.      ..-..++.+..++....+.+.|+  .+....+.+.+|||+.+|
T Consensus        89 ~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPv------hVLg~~k~ea~e~Ae~~L~kVGi--~ek~~~YP~~LSGGQQQR  160 (256)
T COG4598          89 QRLRTRLGMVFQHFNLWSHMTVLENVIEAPV------HVLGVSKAEAIERAEKYLAKVGI--AEKADAYPAHLSGGQQQR  160 (256)
T ss_pred             HHHHHHhhHhhhhcchhHHHHHHHHHHhcch------HhhcCCHHHHHHHHHHHHHHhCc--hhhhhcCccccCchHHHH
Confidence            6778889999999988888888888776422      24467888999999999999998  677779999999999888


Q ss_pred             -----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH----HhcCCCHHHHH
Q psy2281         158 -----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL----LVHSIPVNVLF  224 (287)
Q Consensus       158 -----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l----~~~~~~~~~i~  224 (287)
                           |+...|.+.++|||++++|+...-.+...+.+++++    +++||.+.....+...+.-+    +..--+|++++
T Consensus       161 ~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P~qvf  240 (256)
T COG4598         161 VAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVF  240 (256)
T ss_pred             HHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCChHHHh
Confidence                 788889999999999999999888888899999987    77999999988888876633    22233666665


Q ss_pred             H
Q psy2281         225 K  225 (287)
Q Consensus       225 ~  225 (287)
                      .
T Consensus       241 ~  241 (256)
T COG4598         241 G  241 (256)
T ss_pred             c
Confidence            4

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.78  E-value=2.2e-21  Score=170.28  Aligned_cols=193  Identities=11%  Similarity=0.126  Sum_probs=147.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC--HHHHHHH-HHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT--REAQQAL-RRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~--~~~~~~l-~~~i~~~~~~~~~i~~   96 (287)
                      +++.++..+++|++  ++|.||||||||||+++|++...+.  .|++|+.+...  ......+ ++.+.+++|+..++..
T Consensus         8 ~l~~vs~~i~~Gei--~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~   85 (363)
T TIGR01186         8 GVNDADLAIAKGEI--FVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH   85 (363)
T ss_pred             eEEeeEEEEcCCCE--EEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence            34455555688999  9999999999999999999998766  78888866432  2222122 4568888888777766


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+|+.....       +...+.++..+.+.+.++..|+  +....+++.++|+|+.||     |+...+.++++|||
T Consensus        86 ~TV~eNi~~~~~-------~~~~~~~~~~~~~~~~l~~vgL--~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP  156 (363)
T TIGR01186        86 MTILQNTSLGPE-------LLGWPEQERKEKALELLKLVGL--EEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEA  156 (363)
T ss_pred             CCHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhcCC--chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            677777755433       3345666777888888998888  567778899999999888     77788899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      ++++|+.....+.+.+.++.+.     ++++|+.+.+.+++|+++.+-.+.+    +++++..
T Consensus       157 ~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~  219 (363)
T TIGR01186       157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR  219 (363)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence            9999999999999999888653     7899999999999998875533222    4555544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.78  E-value=3.6e-21  Score=161.49  Aligned_cols=188  Identities=16%  Similarity=0.172  Sum_probs=140.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-CC------EEEEeCCCCCC--HHHHHHHH-HHHHhccCC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-GP------VIILNETDHLT--REAQQALR-RTMEKYITT   90 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-~~------~i~ide~d~l~--~~~~~~l~-~~i~~~~~~   90 (287)
                      .+++.++..+++|+.  +.|+|.|||||||+++++.+.+. ++      -|++++.+.+.  .+....+| +.+..++|+
T Consensus        19 ~av~~vs~~i~~GE~--lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~   96 (316)
T COG0444          19 KAVDGVSFELKKGEI--LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD   96 (316)
T ss_pred             EEEeceeEEEcCCcE--EEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence            345666777789999  99999999999999999999987 32      67888876543  33222222 235566665


Q ss_pred             cE--EEEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHH
Q psy2281          91 CR--LILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILM  161 (287)
Q Consensus        91 ~~--~i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~  161 (287)
                      +.  +-+..+..+.+.+.++..      ... +.++..+.+.+.++..|+.-++ ....+..++|||+.||     |+..
T Consensus        97 p~~sLnPv~~Ig~Qi~E~l~~h------~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~  170 (316)
T COG0444          97 PMTSLNPVMTIGDQIAEVLRLH------GKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALAL  170 (316)
T ss_pred             chhhcCChhhHHHHHHHHHHHh------hcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhC
Confidence            42  222223333455555521      122 5677888999999999996333 4568899999999988     6666


Q ss_pred             HHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhc
Q psy2281         162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVH  216 (287)
Q Consensus       162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~  216 (287)
                      .|++++.||||+++|...+..+.++++++.++     +++|||...+.+++|+++.++.+
T Consensus       171 ~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG  230 (316)
T COG0444         171 NPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAG  230 (316)
T ss_pred             CCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECc
Confidence            78999999999999999999999999999886     88999999999999999866543

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.78  E-value=7e-20  Score=138.14  Aligned_cols=196  Identities=17%  Similarity=0.149  Sum_probs=159.1

Q ss_pred             cCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC--CCC---CCHHHHHHH
Q psy2281           8 YRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNE--TDH---LTREAQQAL   80 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide--~d~---l~~~~~~~l   80 (287)
                      .|-+.++.++|...+...+......|+.  +++.||+|+|||||+|.+.-..-+.  .+.|-+  .|.   .+..+...|
T Consensus         3 irv~~in~~yg~~q~lfdi~l~~~~get--lvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l   80 (242)
T COG4161           3 IQLNGINCFYGAHQALFDITLDCPEGET--LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL   80 (242)
T ss_pred             eEEcccccccccchheeeeeecCCCCCE--EEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence            4566778888888887788877788988  9999999999999999886655443  333433  222   234456678


Q ss_pred             HHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---
Q psy2281          81 RRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR---  157 (287)
Q Consensus        81 ~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---  157 (287)
                      ++.++.+++...+.+..++.+|+.++-.      +...+++++......++++...+  .+.+.++...+|||+.+|   
T Consensus        81 r~~vgmvfqqy~lwphltv~enlieap~------kv~gl~~~qa~~~a~ellkrlrl--~~~adr~plhlsggqqqrvai  152 (242)
T COG4161          81 RRNVGMVFQQYNLWPHLTVQENLIEAPC------RVLGLSKDQALARAEKLLKRLRL--KPYADRYPLHLSGGQQQRVAI  152 (242)
T ss_pred             HHhhhhhhhhhccCchhHHHHHHHhhhH------HHhCCCHHHHHHHHHHHHHHhcc--ccccccCceecccchhhhHHH
Confidence            9999999999999999999999877432      25678888888888889888777  788889999999999887   


Q ss_pred             --HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         158 --AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       158 --al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                        |+++.|.++++|||+.++|+.....+.++|+++...    ++++|..+...+...++.-+
T Consensus       153 aralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvym  214 (242)
T COG4161         153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYM  214 (242)
T ss_pred             HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEee
Confidence              888999999999999999999988999999999865    78999999999888876533

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=1.3e-20  Score=165.76  Aligned_cols=190  Identities=14%  Similarity=0.128  Sum_probs=148.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+.+|++  +.|.||||||||||+++|++...+.  .|.+|+.+......   -.+.+.+++|+..++...+.
T Consensus        19 ~l~~vsl~i~~Ge~--~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~---~~r~ig~v~Q~~~lfp~~tv   93 (356)
T PRK11650         19 VIKGIDLDVADGEF--IVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP---ADRDIAMVFQNYALYPHMSV   93 (356)
T ss_pred             EEeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH---HHCCEEEEeCCccccCCCCH
Confidence            44556666688998  9999999999999999999988766  78888865322111   12568888888888777788


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+|+..+++       ....+..+....+.+.++..++  ++...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus        94 ~eNi~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~  164 (356)
T PRK11650         94 RENMAYGLK-------IRGMPKAEIEERVAEAARILEL--EPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN  164 (356)
T ss_pred             HHHHHhHHh-------hcCCCHHHHHHHHHHHHHHcCC--hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            888877654       2345666777788888888888  667778889999999998     77788999999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      +|......+.+.+.++.++     ++++|+..++..++|++..+-.+.+    +++++.+
T Consensus       165 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~  224 (356)
T PRK11650        165 LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE  224 (356)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence            9999999888888888764     7899999999999998875533222    4555544

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.6e-20  Score=144.73  Aligned_cols=175  Identities=16%  Similarity=0.139  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|+.  +++.|||||||||+++.+++...+.  .|-+++...-.+.+.      =+-++|+..+++..|
T Consensus        19 ~~le~vsL~ia~ge~--vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgae------rgvVFQ~~~LlPWl~   90 (259)
T COG4525          19 SALEDVSLTIASGEL--VVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAE------RGVVFQNEALLPWLN   90 (259)
T ss_pred             hhhhccceeecCCCE--EEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCcc------ceeEeccCccchhhH
Confidence            356777777789999  9999999999999999999998876  777776542222211      123567788888889


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+|+..+++       ....++.+..++..+.+...|+  .+...+++.++|||+.||     |+...|.++++|||+.
T Consensus        91 ~~dNvafgL~-------l~Gi~k~~R~~~a~q~l~~VgL--~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfg  161 (259)
T COG4525          91 VIDNVAFGLQ-------LRGIEKAQRREIAHQMLALVGL--EGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFG  161 (259)
T ss_pred             HHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHhCc--ccccccceEeecchHHHHHHHHHHhhcCcceEeecCchh
Confidence            9999999998       6788999999999999999998  566689999999998777     8999999999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++|..+++.+.+.+-++-+.     +++||+.++..-+.+++..
T Consensus       162 AlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvv  205 (259)
T COG4525         162 ALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVV  205 (259)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEE
Confidence            99999998888888777655     7799999999988887653

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.77  E-value=2.3e-21  Score=170.00  Aligned_cols=190  Identities=15%  Similarity=0.134  Sum_probs=149.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+++|++  ++|.||||||||||+++|++...++  .|.+|+.+.....   .-++.+.+++|+..++...+.
T Consensus        21 ~l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~---~~~r~ig~vfQ~~~lfp~~tv   95 (351)
T PRK11432         21 VIDNLNLTIKQGTM--VTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRS---IQQRDICMVFQSYALFPHMSL   95 (351)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCcccCCCCCH
Confidence            44556666688998  9999999999999999999998766  7888886532211   113568888888877777788


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+|+..+++       +...+..+..+.+..+++..++  .+...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus        96 ~eNi~~~l~-------~~~~~~~~~~~~v~~~l~~~gl--~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~  166 (351)
T PRK11432         96 GENVGYGLK-------MLGVPKEERKQRVKEALELVDL--AGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN  166 (351)
T ss_pred             HHHHHHHHh-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence            888877765       3345667778888889988888  566677789999999988     77788999999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFK  225 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~  225 (287)
                      +|......+.+.+.++.++     ++++|+..++..++|++..+-.+.    -+++++..
T Consensus       167 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~  226 (351)
T PRK11432        167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR  226 (351)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999888764     789999999999999987553322    25565554

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=99.77  E-value=4.3e-16  Score=133.07  Aligned_cols=234  Identities=13%  Similarity=0.186  Sum_probs=160.7

Q ss_pred             HHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC----------------------C---------------
Q psy2281          21 KQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG----------------------P---------------   62 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~----------------------~---------------   62 (287)
                      .+++.+++.+++|+.+| |+|+|+.|+||+++++.+++.+.+                      .               
T Consensus         3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~   82 (299)
T PRK07132          3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY   82 (299)
T ss_pred             hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence            46788999999999999 889999999999999999888611                      0               


Q ss_pred             ----------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHH
Q psy2281          63 ----------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC  132 (287)
Q Consensus        63 ----------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~  132 (287)
                                +++||+++.++..++++|+++++++++++.++++++..+++.++++|||++++|.+++.+++..++... 
T Consensus        83 ~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~-  161 (299)
T PRK07132         83 FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK-  161 (299)
T ss_pred             cCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc-
Confidence                      999999999999999999999999999999999999889999999999999999999999998887652 


Q ss_pred             HHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc-------CccCccHHHHHHHHHHHHHhccChhHHHH
Q psy2281         133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ-------QIVEPDWKIYIRDTAKLIISEQSPKKLLE  205 (287)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d-------~~~~~~~~~~i~~l~~~i~~~~~~~~~~~  205 (287)
                         ++  +++....++..++| ..+|+.....     +......       .... .....+. ..+....   -+....
T Consensus       162 ---~~--~~~~a~~~a~~~~~-~~~a~~~~~~-----~~~~~~~~~~~~l~~~~~-~~~~l~~-~~~~~~~---ke~~~~  225 (299)
T PRK07132        162 ---NK--EKEYNWFYAYIFSN-FEQAEKYINK-----ESENLLKKFEEALNKSLK-EKYELIL-FLNKKLT---KENALF  225 (299)
T ss_pred             ---CC--ChhHHHHHHHHcCC-HHHHHHHHhc-----CCHHHHHHHHHHHHHhhh-hHHHHHH-HHHhhcC---hhhHHH
Confidence               44  77777788888886 8888876432     1110000       0000 0011111 1111111   111111


Q ss_pred             HHHH----HHHHH--hcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         206 VRTR----LYELL--VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       206 ~~~~----~~~l~--~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                      +.+.    ..+++  ..+.+.+.+... .+.+.+ .++.   ..+++.+.+...++..++|..+++|.++.++...+
T Consensus       226 ll~~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~~s~---~~li~~i~~~~~~L~~N~N~~l~~e~lll~l~e~~  298 (299)
T PRK07132        226 LLKLLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFKIEF---FELITIIDEFLNSLETNENFNLQKQAFLVKIYEIY  298 (299)
T ss_pred             HHHHHHHHHHHHHHHhccCChHhHhhH-HHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            1111    11222  223344333333 222222 1222   23478888999999999999999999999987654

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=99.77  E-value=2.6e-16  Score=133.27  Aligned_cols=135  Identities=21%  Similarity=0.342  Sum_probs=113.0

Q ss_pred             CcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------------------------
Q psy2281          18 FHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------------------------   62 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------------   62 (287)
                      .++.+++.+...+.+|+.+| ++|+||  .||+++++.++..+.+.                                  
T Consensus         6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~   83 (290)
T PRK07276          6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV   83 (290)
T ss_pred             HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence            35678899999999999999 999996  68999999999877532                                  


Q ss_pred             -----------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC
Q psy2281          63 -----------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP  119 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~  119 (287)
                                             +++||++|.|+..+.++|++.+|+|++++.||++++..+.++++++|||+.+.|++ 
T Consensus        84 I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-  162 (290)
T PRK07276         84 IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-  162 (290)
T ss_pred             CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-
Confidence                                   99999999999999999999999999999999999999999999999999999976 


Q ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q psy2281         120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC  162 (287)
Q Consensus       120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l  162 (287)
                      +.+++.+++    ...|+  +....+.++..++ +..+|+...
T Consensus       163 ~~~~~~~~L----~~~g~--~~~~a~~la~~~~-s~~~A~~l~  198 (290)
T PRK07276        163 NEAYLIQLL----EQKGL--LKTQAELLAKLAQ-STSEAEKLA  198 (290)
T ss_pred             cHHHHHHHH----HHcCC--ChHHHHHHHHHCC-CHHHHHHHh
Confidence            655555554    45676  5555666666665 688887765

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.77  E-value=2.3e-20  Score=167.57  Aligned_cols=194  Identities=19%  Similarity=0.191  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC-CCHHHHHHHHHHHHhccCCcE--EEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH-LTREAQQALRRTMEKYITTCR--LIL   95 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~-l~~~~~~~l~~~i~~~~~~~~--~i~   95 (287)
                      .+++.++..+.+|+.  +.|+|+|||||||+++++++...++  .+++++.+. ++......+++.+..++|++.  +-+
T Consensus       305 ~Av~~VSf~l~~GE~--lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnP  382 (539)
T COG1123         305 KAVDDVSFDLREGET--LGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNP  382 (539)
T ss_pred             eeeeeeeeEecCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCc
Confidence            446666777789999  9999999999999999999998876  788887661 233334556677777777653  233


Q ss_pred             EeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      ..++.+.+.+++.       +... ...+..+++...++..++. .+...+++.++|||+.+|     |+...|+++++|
T Consensus       383 r~tV~~~i~epL~-------~~~~~~~~~~~~rv~~ll~~VgL~-~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~D  454 (539)
T COG1123         383 RMTVGDILAEPLR-------IHGGGSGAERRARVAELLELVGLP-PEFLDRYPHELSGGQRQRVAIARALALEPKLLILD  454 (539)
T ss_pred             cccHHHHHHhHHh-------hhcccchHHHHHHHHHHHHHcCCC-HHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEec
Confidence            3344444555655       3332 3567777888889999985 335788999999999988     888889999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH-----HhcCCCHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL-----LVHSIPVNVLFK  225 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~i~~  225 (287)
                      ||++.+|+.....+.+++.++.++     ++++||...+..+||++..+     ...| +.+.+++
T Consensus       455 Ep~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G-~~~~v~~  519 (539)
T COG1123         455 EPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG-PTEKVFE  519 (539)
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC-CHHHHhc
Confidence            999999999999999999999887     88999999999999998844     3344 6666654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.77  E-value=5.9e-21  Score=165.04  Aligned_cols=183  Identities=15%  Similarity=0.048  Sum_probs=139.9

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLIL   95 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~   95 (287)
                      +...+++.++..+++|++  +.|.||||+|||||+++|++.+.++  .|.+++.+.....  ...++.+++++++..++.
T Consensus        18 ~~~~~l~~vsl~i~~Gei--~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~--~~~~~~ig~v~q~~~~~~   93 (306)
T PRK13537         18 GDKLVVDGLSFHVQRGEC--FGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA--RHARQRVGVVPQFDNLDP   93 (306)
T ss_pred             CCeEEEecceEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch--HHHHhcEEEEeccCcCCC
Confidence            333456677777789999  9999999999999999999988766  7788887643221  234667888888776655


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++...-+       +...+..+....+..+++..++  .+...+.+..+|+|+.||     |+...|+++++||
T Consensus        94 ~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDE  164 (306)
T PRK13537         94 DFTVRENLLVFGR-------YFGLSAAAARALVPPLLEFAKL--ENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDE  164 (306)
T ss_pred             CCcHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            5555555543211       2234455666677788887777  566677788999999888     7777789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|+.....+.+.+.++.+.    ++++|+...+..+||+++.+
T Consensus       165 Pt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il  211 (306)
T PRK13537        165 PTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVI  211 (306)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            99999999999999999998654    77999999999999988744

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.77  E-value=1.1e-20  Score=163.35  Aligned_cols=179  Identities=16%  Similarity=0.108  Sum_probs=135.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+.+|++  +.|.||||+|||||+++|++.+.+.  .|.+++.+... . ...+++.+.+++++..++...+.
T Consensus         8 ~l~~vs~~i~~Ge~--~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~-~~~~~~~i~~~~q~~~~~~~~tv   83 (302)
T TIGR01188         8 AVDGVNFKVREGEV--FGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-E-PRKVRRSIGIVPQYASVDEDLTG   83 (302)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-C-HHHHHhhcEEecCCCCCCCCCcH
Confidence            44556666688999  9999999999999999999988765  77788765322 1 12345668888877665554455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+..+..+.+...++..++  ++...+.+.++|+|+.||     |+...|.++++|||+++
T Consensus        84 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g  154 (302)
T TIGR01188        84 RENLEMMGR-------LYGLPKDEAEERAEELLELFEL--GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG  154 (302)
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence            555433221       2234445556677788888887  556677788999999888     66777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|+.....+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l  197 (302)
T TIGR01188       155 LDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAII  197 (302)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            9999999999999888654    78999999999999988744

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>KOG1970|consensus

Probab=99.77  E-value=1.1e-17  Score=147.93  Aligned_cols=167  Identities=26%  Similarity=0.380  Sum_probs=123.5

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHh-----cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~-----~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~------------   62 (287)
                      .+|+|||+|++.+++..++..+..++.|++     ....++  ++|+||+||||||.++.|++++...            
T Consensus        70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~  149 (634)
T KOG1970|consen   70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKE  149 (634)
T ss_pred             chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccc
Confidence            379999999999999999999999998886     444444  8999999999999999999998754            


Q ss_pred             -----------------------------------------------EEEEeCCCCCCHH-HHHHHHHHHHhc---cCCc
Q psy2281          63 -----------------------------------------------VIILNETDHLTRE-AQQALRRTMEKY---ITTC   91 (287)
Q Consensus        63 -----------------------------------------------~i~ide~d~l~~~-~~~~l~~~i~~~---~~~~   91 (287)
                                                                     +|+|||....... ....++..+..+   ...+
T Consensus       150 ~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~P  229 (634)
T KOG1970|consen  150 PENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCP  229 (634)
T ss_pred             cccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCc
Confidence                                                           7999998765433 333333333332   2233


Q ss_pred             EEEEEeCCCC--C------CcHHH--hcccceeecCCCCHHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHcCCcH
Q psy2281          92 RLILCANSMS--Q------VIPAI--RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP------PEFALRLAQQSDRNL  155 (287)
Q Consensus        92 ~~i~~~~~~~--~------l~~~l--~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~l~~~s~G~~  155 (287)
                      .+++++....  +      ....+  ..|...+.|.+....-+.+.+..+|..++...+      ......++.-++||+
T Consensus       230 lIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDI  309 (634)
T KOG1970|consen  230 LIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDI  309 (634)
T ss_pred             EEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCccH
Confidence            3333333221  1      22233  334567999999999999999999999876555      456788899999999


Q ss_pred             HHHHHHHHHHhhc
Q psy2281         156 RRAILMCEASKVQ  168 (287)
Q Consensus       156 r~al~~l~~~~~~  168 (287)
                      |.|++.+|.....
T Consensus       310 RsAInsLQlsssk  322 (634)
T KOG1970|consen  310 RSAINSLQLSSSK  322 (634)
T ss_pred             HHHHhHhhhhccc
Confidence            9999999987543

>PRK06893 DNA replication initiation factor; Validated

Probab=99.76  E-value=3.5e-17  Score=135.87  Aligned_cols=158  Identities=16%  Similarity=0.234  Sum_probs=117.8

Q ss_pred             CCCCCCCccCcHHH--HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------------
Q psy2281           9 RPNNLQKLDFHCKQ--ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------------------------   61 (287)
Q Consensus         9 ~p~~~~~~~~~~~~--~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------------------------   61 (287)
                      ++.+|++++++...  ...+.........|.++|+||+|+|||||++++++....                         
T Consensus        11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~   90 (229)
T PRK06893         11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLE   90 (229)
T ss_pred             CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcc
Confidence            46789999975533  223333333333344899999999999999999977521                         


Q ss_pred             --CEEEEeCCCCCC--HHHHHHHHHHHHhccCC-cEE-EEEeCCCCC----CcHHHhcccc---eeecCCCCHHHHHHHH
Q psy2281          62 --PVIILNETDHLT--REAQQALRRTMEKYITT-CRL-ILCANSMSQ----VIPAIRSRCL---CIRIPAPTHEEIVSVL  128 (287)
Q Consensus        62 --~~i~ide~d~l~--~~~~~~l~~~i~~~~~~-~~~-i~~~~~~~~----l~~~l~sr~~---~~~~~~~~~~~~~~~l  128 (287)
                        +++++||++.+.  ...+..+...+....++ ..+ +++++..+.    ..+.++||+.   ++++++|+.++..+++
T Consensus        91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL  170 (229)
T PRK06893         91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL  170 (229)
T ss_pred             cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence              189999999764  23344566666655433 333 444554332    4578999985   7899999999999999


Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         129 TNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      ++.+...++.+++++.+++++.+.||+|.++..+..+.
T Consensus       171 ~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~  208 (229)
T PRK06893        171 QRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLD  208 (229)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999888888763

>PRK06620 hypothetical protein; Validated

Probab=99.76  E-value=4.1e-17  Score=133.61  Aligned_cols=151  Identities=19%  Similarity=0.191  Sum_probs=113.6

Q ss_pred             CCCCccC---cHHHHHHHHHHHhc-CCC---CcEEEeCCCCCcHHHHHHHHHHHhCC----------------CEEEEeC
Q psy2281          12 NLQKLDF---HCKQANHLRNLLKE-GDF---PHLLFYGPSGAGKKTRIMALLKELYG----------------PVIILNE   68 (287)
Q Consensus        12 ~~~~~~~---~~~~~~~l~~~~~~-g~~---~~~~l~Gp~G~GKTtl~~~l~~~~~~----------------~~i~ide   68 (287)
                      +|++++.   +..+...+..+.+. +..   ++++|+||+|+|||||++++++....                ++++|||
T Consensus        14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDd   93 (214)
T PRK06620         14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIED   93 (214)
T ss_pred             CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEec
Confidence            3455443   55677788877752 222   33999999999999999998876431                1899999


Q ss_pred             CCCCCHHHHHHHHHHHHhccCCc-EEEEEeCCCCC---CcHHHhcccc---eeecCCCCHHHHHHHHHHHHHHhCCCCCH
Q psy2281          69 TDHLTREAQQALRRTMEKYITTC-RLILCANSMSQ---VIPAIRSRCL---CIRIPAPTHEEIVSVLTNICKKEGLTIPP  141 (287)
Q Consensus        69 ~d~l~~~~~~~l~~~i~~~~~~~-~~i~~~~~~~~---l~~~l~sr~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  141 (287)
                      ++.+..   ..+...+.....+. .++++++..+.   + +.++||+.   ++.+++|+.+++..++++.++..|+.+++
T Consensus        94 i~~~~~---~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~  169 (214)
T PRK06620         94 IENWQE---PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISR  169 (214)
T ss_pred             cccchH---HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence            996532   34445544443333 45555544332   4 88999997   89999999999999999999988999999


Q ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         142 EFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       142 ~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      ++.+++++.+.||+|.++..++.+.
T Consensus       170 ev~~~L~~~~~~d~r~l~~~l~~l~  194 (214)
T PRK06620        170 QIIDFLLVNLPREYSKIIEILENIN  194 (214)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHHH
Confidence            9999999999999999988888754

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.76  E-value=2.7e-20  Score=163.54  Aligned_cols=189  Identities=16%  Similarity=0.191  Sum_probs=148.5

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++.++..+..|++  +.|.||||||||||+++|++...++  .|.+|+.+.....   ...+.+.+++|+..++...+..
T Consensus        20 l~~vs~~i~~Ge~--~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~---~~~r~ig~v~Q~~~lfp~~tv~   94 (353)
T TIGR03265        20 LKDISLSVKKGEF--VCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLP---PQKRDYGIVFQSYALFPNLTVA   94 (353)
T ss_pred             EEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEeCCcccCCCCcHH
Confidence            3445555678888  9999999999999999999998765  7888875532211   1235688888988888878888


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +|+..+++       ....+..+..+.+.++++..++  ++...+.+.++|+|+.||     |+...|+++++|||++++
T Consensus        95 eNi~~~~~-------~~~~~~~~~~~~~~~~l~~l~L--~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~L  165 (353)
T TIGR03265        95 DNIAYGLK-------NRGMGRAEVAERVAELLDLVGL--PGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL  165 (353)
T ss_pred             HHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--CchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence            88877765       2345667778888899998888  666778899999999988     778889999999999999


Q ss_pred             cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      |......+.+.+.++.++     ++++|+..++..++|++..+-.+.+    +++++.+
T Consensus       166 D~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~  224 (353)
T TIGR03265       166 DARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYR  224 (353)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999888765     7899999999999998875533222    5565554

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.76  E-value=3.1e-20  Score=152.94  Aligned_cols=181  Identities=19%  Similarity=0.204  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      .+++.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+++.+.  ........+++.+.+++++..++..
T Consensus        16 ~il~~is~~i~~G~~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   93 (214)
T TIGR02673        16 AALHDVSLHIRKGEF--LFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD   93 (214)
T ss_pred             eeecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence            355666677789999  9999999999999999999987654  677787543  2222223345667777777655544


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++.....       +.........+.+...++..++  ++...+.+.++|+|+.||     |+...|.++++|||
T Consensus        94 ~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEP  164 (214)
T TIGR02673        94 RTVYENVALPLE-------VRGKKEREIQRRVGAALRQVGL--EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEP  164 (214)
T ss_pred             CcHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            455555543322       1123344555677788888887  455566778999999888     66667899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++++|......+.+.+.++.++    ++++|+...+..++|+++.
T Consensus       165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~  209 (214)
T TIGR02673       165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVII  209 (214)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEE
Confidence            9999999999999999888654    7799999999888887653

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.76  E-value=2.7e-17  Score=139.41  Aligned_cols=155  Identities=25%  Similarity=0.336  Sum_probs=115.0

Q ss_pred             CCCCccCcHHHHHHHHHHH----------hc-----CCCCcEEEeCCCCCcHHHHHHHHHHHhC-------C--------
Q psy2281          12 NLQKLDFHCKQANHLRNLL----------KE-----GDFPHLLFYGPSGAGKKTRIMALLKELY-------G--------   61 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~----------~~-----g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-------~--------   61 (287)
                      .+++++|...+++.++.+.          +.     +..+|++|+|||||||||+++++++.+.       +        
T Consensus         4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~   83 (261)
T TIGR02881         4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA   83 (261)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence            4677889888877776543          11     2345699999999999999999987641       0        


Q ss_pred             -----------------------CEEEEeCCCCCC--------HHHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcH
Q psy2281          62 -----------------------PVIILNETDHLT--------REAQQALRRTMEKYITTCRLILCANSMS-----QVIP  105 (287)
Q Consensus        62 -----------------------~~i~ide~d~l~--------~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~  105 (287)
                                             .+++|||+|.+.        .+.++.+++.++....+..+++++...+     .+.+
T Consensus        84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p  163 (261)
T TIGR02881        84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNP  163 (261)
T ss_pred             HhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcCh
Confidence                                   099999999875        3356777888887655555555543322     2678


Q ss_pred             HHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----------cCCcHHHHHHHHHHHh
Q psy2281         106 AIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ----------SDRNLRRAILMCEASK  166 (287)
Q Consensus       106 ~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----------s~G~~r~al~~l~~~~  166 (287)
                      +++||| ..+.|++++.+++.++++..+...+..+++++...+.+.          +.|+.|.+.+.++.+.
T Consensus       164 ~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~  235 (261)
T TIGR02881       164 GLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAI  235 (261)
T ss_pred             HHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence            999999 469999999999999999999998888899988887543          3467777666666543

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.76  E-value=6.5e-20  Score=151.06  Aligned_cols=181  Identities=22%  Similarity=0.243  Sum_probs=131.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+.  .+.......++.+.+++++..++...
T Consensus        16 ~l~~~sl~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~   93 (214)
T cd03292          16 ALDGINISISAGEF--VFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR   93 (214)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence            44555555678888  9999999999999999999987654  677887543  22222234556677888776655544


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++.....       ....+.++..+.+...++..++  ++.....+.++|+|+.|+     |+...|+++++|||+
T Consensus        94 t~~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  164 (214)
T cd03292          94 NVYENVAFALE-------VTGVPPREIRKRVPAALELVGL--SHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPT  164 (214)
T ss_pred             cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            55555544322       1123444555677778888777  455556678999999888     777778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|+.....+.+.+.++.++    ++++|+...+..++|+++.+
T Consensus       165 ~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l  209 (214)
T cd03292         165 GNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIAL  209 (214)
T ss_pred             CcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999888889888653    77999998888877766533

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.76  E-value=2.5e-20  Score=154.17  Aligned_cols=179  Identities=15%  Similarity=0.107  Sum_probs=130.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++.+.+.  .|.+++.+... . ...+++.+.+++++..++...+.
T Consensus        15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~-~~~~~~~i~~~~q~~~~~~~~tv   90 (220)
T cd03265          15 AVRGVSFRVRRGEI--FGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-E-PREVRRRIGIVFQDLSVDDELTG   90 (220)
T ss_pred             eeeceeEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-C-hHHHhhcEEEecCCccccccCcH
Confidence            45566666788988  9999999999999999999987655  67777754321 1 12334556777777655444444


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+..+..+.+..+++..++  ++.....+.++|+|+.||     |+...|.++++|||+++
T Consensus        91 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~  161 (220)
T cd03265          91 WENLYIHAR-------LYGVPGAERRERIDELLDFVGL--LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG  161 (220)
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence            444433222       2223444555667788888887  555567788999999888     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       162 LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l  205 (220)
T cd03265         162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAII  205 (220)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999998888888888654     77999999999988887654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.75  E-value=1.3e-20  Score=155.61  Aligned_cols=179  Identities=16%  Similarity=0.154  Sum_probs=127.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHH-HHHHHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQ-QALRRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~-~~l~~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+++|++  ++|.||||+|||||+++|++.+.+.  .|.+++.+..  ..... ...++.+.+++++..++..
T Consensus        19 il~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   96 (218)
T cd03255          19 ALKGVSLSIEKGEF--VAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD   96 (218)
T ss_pred             EEeeeEEEEcCCCE--EEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence            45566666688999  9999999999999999999987655  6778875421  11111 1223456777776655444


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++.....       +......+..+.+...++..|+  ++...+.+.++|+|+.|+     |+...|.++++|||
T Consensus        97 ~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP  167 (218)
T cd03255          97 LTALENVELPLL-------LAGVPKKERRERAEELLERVGL--GDRLNHYPSELSGGQQQRVAIARALANDPKIILADEP  167 (218)
T ss_pred             CcHHHHHHHHHh-------hcCCCHHHHHHHHHHHHHHcCC--chhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence            444455433221       2223334455667778888887  555667788999999888     66667899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++++|+.....+.+.+.++.++     ++++|+...+. .+|+++.
T Consensus       168 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~  212 (218)
T cd03255         168 TGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIE  212 (218)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEE
Confidence            9999999999999999998762     77999998876 7776543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.75  E-value=5.1e-20  Score=162.66  Aligned_cols=191  Identities=15%  Similarity=0.148  Sum_probs=147.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+..|++  ++|.||||||||||+++|++...+.  .|.+|+.+......   -.+.+.+++|+..++...++
T Consensus        29 ~l~~vsl~i~~Ge~--~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~---~~r~ig~vfQ~~~lfp~ltv  103 (375)
T PRK09452         29 VISNLDLTINNGEF--LTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA---ENRHVNTVFQSYALFPHMTV  103 (375)
T ss_pred             EEeeeEEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHCCEEEEecCcccCCCCCH
Confidence            34455566688998  9999999999999999999988765  78888865322111   12457888888888777788


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+|+..+++       ....+..+..+.+...++..++  ++...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus       104 ~eNi~~~l~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~  174 (375)
T PRK09452        104 FENVAFGLR-------MQKTPAAEITPRVMEALRMVQL--EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA  174 (375)
T ss_pred             HHHHHHHHh-------hcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence            888877654       2234566677778888888887  667778889999999988     77778899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFKY  226 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~  226 (287)
                      +|......+.+.+.++.++     |+++|+..++..++|+++.+..+.    -+++++...
T Consensus       175 LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~  235 (375)
T PRK09452        175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEE  235 (375)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence            9999999999999988764     789999999999999887553322    255655543

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.75  E-value=1.1e-19  Score=159.44  Aligned_cols=181  Identities=15%  Similarity=0.164  Sum_probs=137.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +++.++..+++|++  ++|.||||+|||||+++|++...+.  .|.+++.+.  ++......+++.+.+++++..++...
T Consensus        20 il~~vsl~i~~Gei--~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~   97 (343)
T PRK11153         20 ALNNVSLHIPAGEI--FGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR   97 (343)
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence            44556666688999  9999999999999999999988765  778887653  22232334456677777776655545


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..+..       +...+..+..+.+...++..|+  ++...+.+.++|+|+.||     |+...|.++++|||+
T Consensus        98 tv~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPt  168 (343)
T PRK11153         98 TVFDNVALPLE-------LAGTPKAEIKARVTELLELVGL--SDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEAT  168 (343)
T ss_pred             cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            55566544432       2234455666677888888887  556667788999999988     667778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|+.....+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       169 s~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l  214 (343)
T PRK11153        169 SALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVI  214 (343)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999999988653     77999999999999987754

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.75  E-value=6.4e-19  Score=133.77  Aligned_cols=178  Identities=13%  Similarity=0.176  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      ++..++..+..|+.  ++|+||+||||||+.+++|....++  .+++.+-+. +.-...+++..+.+..|.+.++. -++
T Consensus        18 il~~isl~v~~Ge~--iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~v-s~~~pea~Rq~VsY~~Q~paLfg-~tV   93 (223)
T COG4619          18 ILNNISLSVRAGEF--IAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV-STLKPEAYRQQVSYCAQTPALFG-DTV   93 (223)
T ss_pred             eecceeeeecCCce--EEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccc-cccChHHHHHHHHHHHcCccccc-cch
Confidence            34555666688999  9999999999999999999998877  788887664 33335678888998888776555 478


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      .+|+..+-+-|     -..++.+....    .++..++  ++. ..+.+.++|||+.++     -+...|+++++||+++
T Consensus        94 eDNlifP~~~r-----~rr~dr~aa~~----llar~~l--~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~Ts  162 (223)
T COG4619          94 EDNLIFPWQIR-----NRRPDRAAALD----LLARFAL--PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITS  162 (223)
T ss_pred             hhccccchHHh-----ccCCChHHHHH----HHHHcCC--chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchh
Confidence            88887775533     23445444443    3444555  444 446688999999988     3455678999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|+.+...++++|..++..     +-++|+.+...+..+++..+.
T Consensus       163 ALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~  208 (223)
T COG4619         163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQ  208 (223)
T ss_pred             hcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEec
Confidence            99999999999999998844     558999998887777765443

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.75  E-value=1.3e-19  Score=137.88  Aligned_cols=180  Identities=17%  Similarity=0.152  Sum_probs=143.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC--CCCCHHHHHHHHH-HHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET--DHLTREAQQALRR-TMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~--d~l~~~~~~~l~~-~i~~~~~~~~~i~~   96 (287)
                      +.+.+...++.|+.  +.|+||+|+|||||+-.+++.-.++  .|.+.+.  ..+.+++...++. .++.++|...+++.
T Consensus        25 IL~~V~L~v~~Ge~--vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~  102 (228)
T COG4181          25 ILKGVELVVKRGET--VAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPN  102 (228)
T ss_pred             EeecceEEecCCce--EEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeecccc
Confidence            34555566688888  9999999999999999999987766  4555543  3466777777764 48889999999999


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+|+.-|+.       +..-+..+.....+..++..|+  ......++.++|||+.||     |++.-|++++.|||
T Consensus       103 ltAlENV~lPle-------L~ge~~~~~~~~A~~lL~~vGL--g~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEP  173 (228)
T COG4181         103 LTALENVALPLE-------LRGESSADSRAGAKALLEAVGL--GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEP  173 (228)
T ss_pred             chhhhhccchhh-------hcCCccccHHHHHHHHHHHhCc--ccccccCccccCchHHHHHHHHHHhcCCCCEEeccCC
Confidence            999999887765       4444455666777788888888  677888999999999988     77777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +..+|..+...+-++++.+..+     ++++|++....+ |++...+
T Consensus       174 TGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~  219 (228)
T COG4181         174 TGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRL  219 (228)
T ss_pred             CCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeee
Confidence            9999999999999999999877     789999877776 4554433

>PRK08727 hypothetical protein; Validated

Probab=99.75  E-value=1.1e-16  Score=133.08  Aligned_cols=156  Identities=21%  Similarity=0.308  Sum_probs=118.6

Q ss_pred             CCCCCccCcH-HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------
Q psy2281          11 NNLQKLDFHC-KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------------------   62 (287)
Q Consensus        11 ~~~~~~~~~~-~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------   62 (287)
                      .+|+++++.+ .....+.........+.++|+||+|+|||+++.+++......                           
T Consensus        16 ~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~d   95 (233)
T PRK08727         16 QRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRS   95 (233)
T ss_pred             CChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCC
Confidence            3688887644 333443433322222239999999999999999997664311                           


Q ss_pred             EEEEeCCCCCC--HHHHHHHHHHHHhccC-CcEEEEEeCCCCC----CcHHHhcc---cceeecCCCCHHHHHHHHHHHH
Q psy2281          63 VIILNETDHLT--REAQQALRRTMEKYIT-TCRLILCANSMSQ----VIPAIRSR---CLCIRIPAPTHEEIVSVLTNIC  132 (287)
Q Consensus        63 ~i~ide~d~l~--~~~~~~l~~~i~~~~~-~~~~i~~~~~~~~----l~~~l~sr---~~~~~~~~~~~~~~~~~l~~~~  132 (287)
                      +++|||++.+.  ...+..+.+.+..... ...++++++....    +.+.++||   |..+.+++++.+++..++++.+
T Consensus        96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a  175 (233)
T PRK08727         96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA  175 (233)
T ss_pred             EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence            89999999875  3345566666665433 3457777776533    57899999   6789999999999999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      ...++.+++++..++++.++||.|.+++.++.+.
T Consensus       176 ~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~  209 (233)
T PRK08727        176 QRRGLALDEAAIDWLLTHGERELAGLVALLDRLD  209 (233)
T ss_pred             HHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8889999999999999999999999988888765

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.75  E-value=2.8e-20  Score=155.19  Aligned_cols=181  Identities=17%  Similarity=0.202  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+..........++.+.+.+++..++...+.
T Consensus        15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (232)
T cd03218          15 VVNGVSLSVKQGEI--VGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTV   92 (232)
T ss_pred             eeccceeEecCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCccccccCcH
Confidence            45666667788999  9999999999999999999987654  6777775422111111123346666666555444444


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       .......+....+...++..++  ++...+.+.++|+|+.|+     |+...|.++++|||+++
T Consensus        93 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  163 (232)
T cd03218          93 EENILAVLE-------IRGLSKKEREEKLEELLEEFHI--THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAG  163 (232)
T ss_pred             HHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence            455433221       1123344455566777777777  555667788999999888     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.    ++++|+.+.+...+++++.+
T Consensus       164 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  206 (232)
T cd03218         164 VDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYII  206 (232)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999998888888888653    78999999999999987755

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.75  E-value=1.3e-19  Score=151.36  Aligned_cols=182  Identities=20%  Similarity=0.194  Sum_probs=133.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+..  +......+++.+.+++++..++...
T Consensus        15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (235)
T cd03261          15 VLKGVDLDVRRGEI--LAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL   92 (235)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCC
Confidence            44555666688999  9999999999999999999988655  6778875532  2211234455677777776555444


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++......      ....+.++..+.+...++..++  ++...+.+.++|+|+.||     |+...++++++|||+
T Consensus        93 tv~~~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt  164 (235)
T cd03261          93 TVFENVAFPLRE------HTRLSEEEIREIVLEKLEAVGL--RGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT  164 (235)
T ss_pred             cHHHHHHHHHhh------ccCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence            555555433210      1123455566677778888887  555667788999999988     666678999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       165 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l  210 (235)
T cd03261         165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVL  210 (235)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEE
Confidence            999999999999999988653     77999999999988887654

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.75  E-value=4.7e-20  Score=152.32  Aligned_cols=179  Identities=16%  Similarity=0.168  Sum_probs=132.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+..|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. ... ...+++.+.+++++..++...+.
T Consensus        20 il~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~-~~~~~~~i~~~~q~~~~~~~~tv   95 (218)
T cd03266          20 AVDGVSFTVKPGEV--TGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDV-VKE-PAEARRRLGFVSDSTGLYDRLTA   95 (218)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEc-ccC-HHHHHhhEEEecCCcccCcCCCH
Confidence            45566666688988  9999999999999999999987654  677787543 221 22345667777777655544455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+..+....+.+.++..|+  ++...+.+.++|+|+.|+     |+...|.++++|||+++
T Consensus        96 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~  166 (218)
T cd03266          96 RENLEYFAG-------LYGLKGDELTARLEELADRLGM--EELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTG  166 (218)
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcC
Confidence            555433221       2233455666677788888887  566677888999999888     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       167 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l  209 (218)
T cd03266         167 LDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVL  209 (218)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            9999998888889888653    78999999888888876543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.75  E-value=5.1e-20  Score=152.34  Aligned_cols=179  Identities=17%  Similarity=0.109  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+++.+.. .. ...+++.+.+++++..++...+.
T Consensus        17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~-~~-~~~~~~~i~~v~q~~~~~~~~tv   92 (220)
T cd03263          17 AVDDLSLNVYKGEI--FGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR-TD-RKAARQSLGYCPQFDALFDELTV   92 (220)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecc-cc-hHHHhhhEEEecCcCCccccCCH
Confidence            45566666788998  9999999999999999999987655  6778876532 11 13345557777777655544455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+..+..+.+...++..++  ++.....+.++|+|+.|+     |+...+.++++|||+++
T Consensus        93 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~  163 (220)
T cd03263          93 REHLRFYAR-------LKGLPKSEIKEEVELLLRVLGL--TDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG  163 (220)
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence            555433222       2223444555667777887777  455566788999999888     67777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       164 LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l  205 (220)
T cd03263         164 LDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIM  205 (220)
T ss_pred             CCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEE
Confidence            9999988888888887653   77999999998888877644

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.74  E-value=1.4e-20  Score=164.44  Aligned_cols=180  Identities=17%  Similarity=0.088  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+.+|++  +.|.||||+|||||+++|++.+.+.  .|.+++.+....  ....++.+++++++..++...+
T Consensus        55 ~~l~~is~~i~~Gei--~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--~~~~~~~ig~v~q~~~~~~~~t  130 (340)
T PRK13536         55 AVVNGLSFTVASGEC--FGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--ARLARARIGVVPQFDNLDLEFT  130 (340)
T ss_pred             EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc--hHHHhccEEEEeCCccCCCCCc
Confidence            345566666688999  9999999999999999999988766  778888664221  1234556777777765555445


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++...-.       +...+..+..+.+...++..++  ++...+.+..+|+|+.|+     |+...|+++++|||++
T Consensus       131 v~e~l~~~~~-------~~~~~~~~~~~~~~~ll~~~~L--~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~  201 (340)
T PRK13536        131 VRENLLVFGR-------YFGMSTREIEAVIPSLLEFARL--ESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT  201 (340)
T ss_pred             HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            5555432111       2223444555666677777777  566677788999999888     6777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.+.    ++++|+...+..++|+++.+
T Consensus       202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il  245 (340)
T PRK13536        202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL  245 (340)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            99999999999999998754    78999999999999988744

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.74  E-value=3.8e-20  Score=162.57  Aligned_cols=194  Identities=17%  Similarity=0.175  Sum_probs=145.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+.+|++  +.|.||||||||||+++|++...+.  .|.+|+.+.....   ..++.+.+++|+..++...+.
T Consensus        17 ~l~~isl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---~~~r~i~~v~Q~~~l~p~~tv   91 (353)
T PRK10851         17 VLNDISLDIPSGQM--VALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH---ARDRKVGFVFQHYALFRHMTV   91 (353)
T ss_pred             EEEEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---HHHCCEEEEecCcccCCCCcH
Confidence            34455555678998  9999999999999999999987765  7888876532211   123457788888777766677


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+|+..+++.+-   ....++.++..+.+...++..++  ++...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus        92 ~eni~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~  166 (353)
T PRK10851         92 FDNIAFGLTVLP---RRERPNAAAIKAKVTQLLEMVQL--AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGA  166 (353)
T ss_pred             HHHHHhhhhhcc---cccCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            777765543100   01134556677788888888887  566777889999999888     77778899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      +|......+.+.+.++.++     ++++|+...+..++|+++.|..+++    +++++..
T Consensus       167 LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~  226 (353)
T PRK10851        167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR  226 (353)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999999988765     7899999999999998875533322    5565544

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.74  E-value=2.6e-20  Score=153.14  Aligned_cols=179  Identities=18%  Similarity=0.151  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE-EEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRL-ILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~-i~~~~   98 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+... ......++.+.+++++..+ ++..+
T Consensus        16 il~~vs~~i~~G~~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~~~~t   92 (211)
T cd03225          16 ALDDISLTIKKGEF--VLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTK-LSLKELRRKVGLVFQNPDDQFFGPT   92 (211)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc-CCHHHHHhhceEEecChhhhcCCCc
Confidence            45556666688988  9999999999999999999987654  67777754211 1122345567777776532 33334


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ....+..+....+...++..++  ++...+.+.++|+|+.|+     |+...++++++|||++
T Consensus        93 ~~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~  163 (211)
T cd03225          93 VEEEVAFGLE-------NLGLPEEEIEERVEEALELVGL--EGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA  163 (211)
T ss_pred             HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            4444433221       1123344455566777777777  455566778899999888     6666789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++|......+.+.+.++.++    ++++|+.+.+..++++++.
T Consensus       164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~  206 (211)
T cd03225         164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIV  206 (211)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            99999999999999888763    7799999988888876543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.74  E-value=1.4e-19  Score=139.05  Aligned_cols=175  Identities=15%  Similarity=0.170  Sum_probs=132.3

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHH
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAI  107 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l  107 (287)
                      +..|+.  +.+.||||+|||||++.+++...+.  .|.|++.|......   -.+-+...+|+..++-..++.+|+-.++
T Consensus        22 v~~ge~--vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P---~~RPVSmlFQEnNLFaHLtV~qNigLGl   96 (231)
T COG3840          22 VPAGEI--VAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPP---AERPVSMLFQENNLFAHLTVAQNIGLGL   96 (231)
T ss_pred             ecCCcE--EEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCc---ccCChhhhhhccccchhhhhhhhhcccC
Confidence            467888  9999999999999999999998876  78888877532111   1133555667777888888888865443


Q ss_pred             hcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCcc
Q psy2281         108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPD  182 (287)
Q Consensus       108 ~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~  182 (287)
                      .--      -+++. +-++.+..++.+.|+  .....+...++|||+.||     ++.-.+-++++|||++++|+..+..
T Consensus        97 ~P~------LkL~a-~~r~~v~~aa~~vGl--~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~e  167 (231)
T COG3840          97 SPG------LKLNA-EQREKVEAAAAQVGL--AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE  167 (231)
T ss_pred             Ccc------cccCH-HHHHHHHHHHHHhCh--hhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHH
Confidence            210      01333 445567778888888  677788889999999888     4445567788999999999999999


Q ss_pred             HHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC
Q psy2281         183 WKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI  218 (287)
Q Consensus       183 ~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~  218 (287)
                      +..++.++.++     ++++|+++++.++.+++.-+-.+.+
T Consensus       168 Ml~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri  208 (231)
T COG3840         168 MLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRI  208 (231)
T ss_pred             HHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEE
Confidence            99999999877     7899999999999998764433333

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.74  E-value=2.7e-16  Score=141.77  Aligned_cols=240  Identities=14%  Similarity=0.142  Sum_probs=159.3

Q ss_pred             CCCCcc-C--cHHHHHHHHHHHhc-----CC-CCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------
Q psy2281          12 NLQKLD-F--HCKQANHLRNLLKE-----GD-FPHLLFYGPSGAGKKTRIMALLKELYG---------------------   61 (287)
Q Consensus        12 ~~~~~~-~--~~~~~~~l~~~~~~-----g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------   61 (287)
                      +|++++ |  +..+......+.+.     |. .++++|+||+|+|||||++++++.+..                     
T Consensus       109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l  188 (445)
T PRK12422        109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAI  188 (445)
T ss_pred             cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHH
Confidence            677776 3  23344566666531     22 234999999999999999999986521                     


Q ss_pred             ---------------CEEEEeCCCCCCH--HHHHHHHHHHHhcc-CCcEEEEEeCCC----CCCcHHHhccc---ceeec
Q psy2281          62 ---------------PVIILNETDHLTR--EAQQALRRTMEKYI-TTCRLILCANSM----SQVIPAIRSRC---LCIRI  116 (287)
Q Consensus        62 ---------------~~i~ide~d~l~~--~~~~~l~~~i~~~~-~~~~~i~~~~~~----~~l~~~l~sr~---~~~~~  116 (287)
                                     ++++|||++.+..  ..+..+...+.... ....++++++..    ..+.+.++||+   ..+.+
T Consensus       189 ~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l  268 (445)
T PRK12422        189 RSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPL  268 (445)
T ss_pred             hcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEec
Confidence                           0899999998753  34666776665432 344577776654    34678999999   47899


Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh---cCCCcccccCccCccHHHHHHHHHHH
Q psy2281         117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV---QQYPFQIDQQIVEPDWKIYIRDTAKL  193 (287)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~---~dep~~~~d~~~~~~~~~~i~~l~~~  193 (287)
                      .+|+.+++..++++.++..|+.++++++.+++....||+|+....+..+++   +.. +.+ .+.+.    +.+.++.+.
T Consensus       269 ~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~-~~~-~~i~~----~~~~~~l~~  342 (445)
T PRK12422        269 HPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKK-LSH-QLLYV----DDIKALLHD  342 (445)
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhC-CCCCH----HHHHHHHHH
Confidence            999999999999999999999999999999999999999998888888752   211 111 01222    233344333


Q ss_pred             HHhc-----cChhHHHHHHHHHH-----HHHhcCCCHHH-HHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcC
Q psy2281         194 IISE-----QSPKKLLEVRTRLY-----ELLVHSIPVNV-LFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKG  257 (287)
Q Consensus       194 i~~~-----~~~~~~~~~~~~~~-----~l~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  257 (287)
                      ++..     -+.+.+.+.....|     ++....-+.+. ...++.+|+++++.+.+..++.+.++.-+..+.++
T Consensus       343 ~~~~~~~~~~t~~~I~~~Va~~~~v~~~dl~s~~R~~~i~~~Rqiamyl~r~~t~~s~~~IG~~fgrdHsTV~~a  417 (445)
T PRK12422        343 VLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVKIGDVFSRDHSTVISS  417 (445)
T ss_pred             hhhcccCCCCCHHHHHHHHHHHhCCCHHHHhcCCCCcccccHHHHHHHHHHHhcCCCHHHHHHHhCCChHHHHHH
Confidence            3221     13344444444433     22222222222 24599999999998888988888887444444443

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.74  E-value=3.5e-20  Score=160.33  Aligned_cols=180  Identities=17%  Similarity=0.085  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+++|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-. . ....++.+.+++++..++...+
T Consensus        18 ~~l~~vsl~i~~Ge~--~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~-~~~~~~~i~~v~q~~~~~~~~t   93 (303)
T TIGR01288        18 VVVNDLSFTIARGEC--FGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-R-ARLARVAIGVVPQFDNLDPEFT   93 (303)
T ss_pred             EEEcceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-c-HHHHhhcEEEEeccccCCcCCc
Confidence            355666777789999  9999999999999999999987655  67788765321 1 1234556777777765544444


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       +...+..+....+...++..++  ++...+.+.++|+|+.||     |+...|.++++|||++
T Consensus        94 v~e~l~~~~~-------~~~~~~~~~~~~~~~ll~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  164 (303)
T TIGR01288        94 VRENLLVFGR-------YFGMSTREIEAVIPSLLEFARL--ESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT  164 (303)
T ss_pred             HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            4444432111       1223445555666777777776  566667788999999888     6667789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l  208 (303)
T TIGR01288       165 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVL  208 (303)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            99999999999999888654    78999999999999987744

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.74  E-value=1.6e-16  Score=132.04  Aligned_cols=159  Identities=15%  Similarity=0.269  Sum_probs=123.8

Q ss_pred             cCCCCCCCccC--cHHHHHHHHHHHhcC-CCCcEEEeCCCCCcHHHHHHHHHHHhC-----------------------C
Q psy2281           8 YRPNNLQKLDF--HCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKELY-----------------------G   61 (287)
Q Consensus         8 ~~p~~~~~~~~--~~~~~~~l~~~~~~g-~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----------------------~   61 (287)
                      -+|.+|+++++  +..+...++.+.... ..++++|+||+|+|||++++++++...                       +
T Consensus        12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   91 (227)
T PRK08903         12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAFDFDPEA   91 (227)
T ss_pred             CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHHhhcccC
Confidence            35677888773  456677777776532 223499999999999999999998751                       1


Q ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEeCCCC---CCcHHHhccc---ceeecCCCCHHHHHHHHHHHHH
Q psy2281          62 PVIILNETDHLTREAQQALRRTMEKYITTCR--LILCANSMS---QVIPAIRSRC---LCIRIPAPTHEEIVSVLTNICK  133 (287)
Q Consensus        62 ~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~~~~~---~l~~~l~sr~---~~~~~~~~~~~~~~~~l~~~~~  133 (287)
                      ++++|||++.++...+..+...++.......  ++++++..+   .+.+.++||+   ..+.+++++.++....+.+.+.
T Consensus        92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~  171 (227)
T PRK08903         92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA  171 (227)
T ss_pred             CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence            1899999999888888888888876544433  444444322   3567788886   5789999999989999999998


Q ss_pred             HhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       134 ~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      ..++.+++++.+++++.+.|+.+.+...++.+.
T Consensus       172 ~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~  204 (227)
T PRK08903        172 ERGLQLADEVPDYLLTHFRRDMPSLMALLDALD  204 (227)
T ss_pred             HcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            999999999999999999999999888887754

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.74  E-value=8.1e-20  Score=152.44  Aligned_cols=181  Identities=15%  Similarity=0.146  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +++.++..+.+|+.  ++|.||||+|||||+++|++.+.+.  .|.+|+.+..  ........++.+.+++++..++...
T Consensus        20 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (233)
T cd03258          20 ALKDVSLSVPKGEI--FGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR   97 (233)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence            45566666788999  9999999999999999999988655  7788876532  1122223455677777776655444


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++.....       ....+..+....+...++..++  ++...+.+.++|+|+.|+     |+...+.++++|||+
T Consensus        98 t~~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~  168 (233)
T cd03258          98 TVFENVALPLE-------IAGVPKAEIEERVLELLELVGL--EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEAT  168 (233)
T ss_pred             cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence            55555543322       1123344555667778888887  555566788999999888     666667899999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.++     ++++|+.+.+..++++++.+
T Consensus       169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l  214 (233)
T cd03258         169 SALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVM  214 (233)
T ss_pred             CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999999888653     77999999998888887654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=1e-19  Score=160.94  Aligned_cols=190  Identities=12%  Similarity=0.130  Sum_probs=146.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+..|++  ++|.||||||||||+++|++...++  .|.+|+.+....   ...++.+.+++|+..++...+.
T Consensus        34 ~l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---~~~~r~ig~vfQ~~~lfp~ltv  108 (377)
T PRK11607         34 AVDDVSLTIYKGEI--FALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV---PPYQRPINMMFQSYALFPHMTV  108 (377)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---CHHHCCEEEEeCCCccCCCCCH
Confidence            34445555678988  9999999999999999999998765  778887553211   1124568888888888887788


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+|+..+++       ....+..+..+.+..+++..++  .+...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus       109 ~eNi~~~l~-------~~~~~~~~~~~~v~~~l~~l~L--~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~  179 (377)
T PRK11607        109 EQNIAFGLK-------QDKLPKAEIASRVNEMLGLVHM--QEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA  179 (377)
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            888877665       2234566777888888888888  566677888999999988     77788999999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      +|......+.+.+.++.++     ++++|+..++..++|+++.+..+++    +++++..
T Consensus       180 LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~  239 (377)
T PRK11607        180 LDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYE  239 (377)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHh
Confidence            9999888888888887664     7899999999999998875533222    5555544

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.74  E-value=3.2e-19  Score=146.61  Aligned_cols=177  Identities=14%  Similarity=0.101  Sum_probs=128.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++| .  ++|.||||+|||||++++++.+.+.  .|.+++.+. .... ..+++.+.+++++..++...+.
T Consensus        15 ~l~~vs~~i~~g-~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~-~~~~~~i~~~~q~~~~~~~~tv   89 (211)
T cd03264          15 ALDGVSLTLGPG-M--YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDV-LKQP-QKLRRRIGYLPQEFGVYPNFTV   89 (211)
T ss_pred             EEcceeEEEcCC-c--EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCcc-ccch-HHHHhheEEecCCCcccccCCH
Confidence            344555556777 7  9999999999999999999987655  677787653 2211 3445667777777765554455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+.++..+.+...++..++  ++.....+.++|+|+.||     |+...|+++++|||+++
T Consensus        90 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  160 (211)
T cd03264          90 REFLDYIAW-------LKGIPSKEVKARVDEVLELVNL--GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG  160 (211)
T ss_pred             HHHHHHHHH-------HhCCCHHHHHHHHHHHHHHCCC--HHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            555543322       2233444555667777888777  455556778999999888     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~  212 (287)
                      +|......+.+.+.++.+.   ++++|+...+..++++++.
T Consensus       161 LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~  201 (211)
T cd03264         161 LDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAV  201 (211)
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEE
Confidence            9999988888888887544   7799999988888777653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.74  E-value=2.9e-19  Score=147.98  Aligned_cols=181  Identities=16%  Similarity=0.159  Sum_probs=132.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+++.+.  ........+++.+.+.+++..+++..
T Consensus        17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~   94 (222)
T PRK10908         17 ALQGVTFHMRPGEM--AFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR   94 (222)
T ss_pred             EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccccccc
Confidence            44556666688988  9999999999999999999987654  677877542  22222233556778888877665555


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..+..       +...+.++....+...++..++  .+...+.+.++|+|+.|+     |+...|.++++|||+
T Consensus        95 tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  165 (222)
T PRK10908         95 TVYDNVAIPLI-------IAGASGDDIRRRVSAALDKVGL--LDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT  165 (222)
T ss_pred             cHHHHHHhHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            55555543321       2233445555667777887777  455566778999999888     666778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  210 (222)
T PRK10908        166 GNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL  210 (222)
T ss_pred             CcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999888888888888653    77999999998888876543

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=99.74  E-value=2.8e-16  Score=137.81  Aligned_cols=237  Identities=17%  Similarity=0.221  Sum_probs=162.2

Q ss_pred             CCCCccC---cHHHHHHHHHHHhc-C-CCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------------
Q psy2281          12 NLQKLDF---HCKQANHLRNLLKE-G-DFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------   62 (287)
Q Consensus        12 ~~~~~~~---~~~~~~~l~~~~~~-g-~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------   62 (287)
                      +|++++.   +..+......+.+. | ..++++|+||.|+|||+|++++++.....                        
T Consensus        85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~  164 (408)
T COG0593          85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRD  164 (408)
T ss_pred             chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHh
Confidence            4555543   33455555555543 2 34559999999999999999998776311                        


Q ss_pred             -------------EEEEeCCCCCCH--HHHHHHHHHHHhccCCc-EEEEEeCCCC----CCcHHHhcccc---eeecCCC
Q psy2281          63 -------------VIILNETDHLTR--EAQQALRRTMEKYITTC-RLILCANSMS----QVIPAIRSRCL---CIRIPAP  119 (287)
Q Consensus        63 -------------~i~ide~d~l~~--~~~~~l~~~i~~~~~~~-~~i~~~~~~~----~l~~~l~sr~~---~~~~~~~  119 (287)
                                   +++||+++.+..  ..+..+...+.....+. .+++++...+    .+.+.++||+.   .+.+.+|
T Consensus       165 ~~~~~Fk~~y~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~P  244 (408)
T COG0593         165 NEMEKFKEKYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPP  244 (408)
T ss_pred             hhHHHHHHhhccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCC
Confidence                         889999998764  34778888888776665 4566554443    36789999984   6889999


Q ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccC
Q psy2281         120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS  199 (287)
Q Consensus       120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~  199 (287)
                      +.+....++.+.++..++.+++++..++++....++|.+...+.++..+..-...  ..+...+.+.++++...--. -+
T Consensus       245 d~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~--~iTi~~v~e~L~~~~~~~~~-it  321 (408)
T COG0593         245 DDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKR--AITIDLVKEILKDLLRAGEK-IT  321 (408)
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCc--cCcHHHHHHHHHHhhccccc-CC
Confidence            9999999999999999999999999999999999999966666655544321100  22333333333333222112 34


Q ss_pred             hhHHHHHHHHHH-----HHHhcCCCHHHH-HHHHHHHHHHhCChHHHHHHHHHHHHHhh
Q psy2281         200 PKKLLEVRTRLY-----ELLVHSIPVNVL-FKYLLEGLLANCDSDLKSKSIEMAAMFEH  252 (287)
Q Consensus       200 ~~~~~~~~~~~~-----~l~~~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (287)
                      .+.+.+.....|     ++...+-+.+.+ ..++.+|+++.+.+.+..++.+.++ .||
T Consensus       322 ie~I~~~Va~~y~v~~~dl~s~~R~~~i~~~RqiamyL~r~lt~~Slp~IG~~Fg-rdH  379 (408)
T COG0593         322 IEDIQKIVAEYYNVKVSDLLSKSRTRNIVRPRQIAMYLARELTNLSLPEIGKAFG-RDH  379 (408)
T ss_pred             HHHHHHHHHHHhCCCHHHhhccccccccchHHHHHHHHHHHHccCcHHHHHHHhC-CCc
Confidence            555555555555     233322222222 4599999999999999999999888 544

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.74  E-value=5.4e-20  Score=151.44  Aligned_cols=178  Identities=15%  Similarity=0.193  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+.-...   ..++.+.+++++..++...+.
T Consensus        15 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~---~~~~~i~~v~q~~~~~~~~tv   89 (213)
T cd03259          15 ALDDLSLTVEPGEF--LALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP---PERRNIGMVFQDYALFPHLTV   89 (213)
T ss_pred             eecceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc---hhhccEEEEcCchhhccCCcH
Confidence            45666666788999  9999999999999999999987654  6777775421111   122345666666544433344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       ....+.....+.+...++..++  ++...+.+.++|+|+.||     |+...+.++++|||+++
T Consensus        90 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~  160 (213)
T cd03259          90 AENIAFGLK-------LRGVPKAEIRARVRELLELVGL--EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSA  160 (213)
T ss_pred             HHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            444432211       1123344555667777888777  555667788999999988     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       161 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l  204 (213)
T cd03259         161 LDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVM  204 (213)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEE
Confidence            9999999999999888653     77999999888888876543

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.74  E-value=2.6e-19  Score=157.91  Aligned_cols=172  Identities=15%  Similarity=0.155  Sum_probs=134.0

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC----CC--CCHHHHHHHH-HHHHhccCCcEEEEEeCCCC
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET----DH--LTREAQQALR-RTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~----d~--l~~~~~~~l~-~~i~~~~~~~~~i~~~~~~~  101 (287)
                      .+|++  +.|.||||+|||||+++|++.+.+.  .|++|+.    +.  ++......++ +.+.+++|+..++...+..+
T Consensus        48 ~~Gei--~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e  125 (382)
T TIGR03415        48 EEGEI--CVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE  125 (382)
T ss_pred             cCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence            57888  9999999999999999999988765  7788863    21  2222223333 35788888877666566677


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                      |+..++.       +...+..+....+.+.++..|+  ++.....+.++|+|+.||     |+...|.++++|||++++|
T Consensus       126 Ni~~~~~-------~~g~~~~~~~~~a~e~le~vgL--~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD  196 (382)
T TIGR03415       126 NVAFGLE-------MQGMPEAERRKRVDEQLELVGL--AQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD  196 (382)
T ss_pred             HHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence            7765543       3345566667778888888888  566677888999999888     7778889999999999999


Q ss_pred             CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         177 QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +.....+.+.+.++.++     ++++|+.+.+.++++++..+
T Consensus       197 ~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl  238 (382)
T TIGR03415       197 PLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIM  238 (382)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999999988764     78999999999999988744

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.73  E-value=3e-20  Score=152.97  Aligned_cols=181  Identities=17%  Similarity=0.155  Sum_probs=130.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT-REAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+... .......++.+.+++++..++...+
T Consensus        15 ~l~~~s~~i~~G~~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   92 (213)
T cd03262          15 VLKGIDLTVKKGEV--VVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLT   92 (213)
T ss_pred             eecCceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCCCCc
Confidence            44555666688988  9999999999999999999987654  67788765321 1122334566777777765544344


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....      .+...+.++..+.+...++..|+  ++...+.+.++|+|+.|+     |+...|+++++|||++
T Consensus        93 ~~e~l~~~~~------~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~  164 (213)
T cd03262          93 VLENITLAPI------KVKGMSKAEAEERALELLEKVGL--ADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTS  164 (213)
T ss_pred             HHHHHHhHHH------HhcCCCHHHHHHHHHHHHHHcCC--HhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            4455433211      01123344555667778888777  555667788999999888     6666789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++|......+.+.+.++.+.    ++++|+...+..++++++.
T Consensus       165 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~  207 (213)
T cd03262         165 ALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIF  207 (213)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEE
Confidence            99999988888888888654    6799999999888887653

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=99.73  E-value=2.6e-16  Score=142.36  Aligned_cols=243  Identities=13%  Similarity=0.143  Sum_probs=159.5

Q ss_pred             CCCCCCccC---cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhC---CC-------------------
Q psy2281          10 PNNLQKLDF---HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELY---GP-------------------   62 (287)
Q Consensus        10 p~~~~~~~~---~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~-------------------   62 (287)
                      +.+|++++.   +..+......+.+. |. .++++|+||+|+|||+|++++++.+.   +.                   
T Consensus       111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l  190 (450)
T PRK14087        111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL  190 (450)
T ss_pred             ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence            457777764   22345555555543 33 34499999999999999999988542   11                   


Q ss_pred             ------------------EEEEeCCCCCC--HHHHHHHHHHHHhccCCc-EEEEEeCCCC----CCcHHHhcccc---ee
Q psy2281          63 ------------------VIILNETDHLT--REAQQALRRTMEKYITTC-RLILCANSMS----QVIPAIRSRCL---CI  114 (287)
Q Consensus        63 ------------------~i~ide~d~l~--~~~~~~l~~~i~~~~~~~-~~i~~~~~~~----~l~~~l~sr~~---~~  114 (287)
                                        +++|||++.+.  ...++.|...+....... .++++++..+    .+.+.++||+.   ++
T Consensus       191 ~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~  270 (450)
T PRK14087        191 QKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSI  270 (450)
T ss_pred             HHhhhHHHHHHHHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCcee
Confidence                              89999999876  456777887777654443 4666666543    36678999984   68


Q ss_pred             ecCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHH
Q psy2281         115 RIPAPTHEEIVSVLTNICKKEGL--TIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK  192 (287)
Q Consensus       115 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~  192 (287)
                      .+.+|+.+++.+++++.++..|+  .+++++++++++.++||.|.+...+..+....--...-..+.    .+.++++.+
T Consensus       271 ~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it----~~~v~~~l~  346 (450)
T PRK14087        271 AIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIIT----IEIVSDLFR  346 (450)
T ss_pred             ccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCC----HHHHHHHHh
Confidence            89999999999999999998875  689999999999999999998888887764321100001122    223334333


Q ss_pred             HHHhc----cChhHHHHHHHHHH-----HHHhcCCCHHH-HHHHHHHHHHHhCChHHHHHHHHHHH-HHhhHHhc
Q psy2281         193 LIISE----QSPKKLLEVRTRLY-----ELLVHSIPVNV-LFKYLLEGLLANCDSDLKSKSIEMAA-MFEHRIHK  256 (287)
Q Consensus       193 ~i~~~----~~~~~~~~~~~~~~-----~l~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~  256 (287)
                      .+...    -+.+.+.+.....|     ++....-+.+. ...++.+|+++++.+.+..++...++ .-+..+.+
T Consensus       347 ~~~~~~~~~~t~~~I~~~Va~~~~i~~~dl~s~~R~~~i~~~RqiamyL~r~~t~~sl~~IG~~FggrdHsTV~~  421 (450)
T PRK14087        347 DIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEILNHTLAQIGEEFGGRDHTTVIN  421 (450)
T ss_pred             hccccccCCCCHHHHHHHHHHHcCCCHHHHhCCCCCccccHHHHHHHHHHHHHcCCCHHHHHHHhCCCChHHHHH
Confidence            32211    13344444433333     22222122122 34599999999888888888888876 33333333

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.73  E-value=3.9e-19  Score=146.01  Aligned_cols=175  Identities=18%  Similarity=0.201  Sum_probs=125.5

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      .+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+|+.+. +.    ..++.+.+++++..++...+..
T Consensus        16 l~~v~~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~----~~~~~i~~~~q~~~~~~~~tv~   88 (210)
T cd03269          16 LDDISFSVEKGEI--FGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPL-DI----AARNRIGYLPEERGLYPKMKVI   88 (210)
T ss_pred             EeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCch-hH----HHHccEEEeccCCcCCcCCcHH
Confidence            3445555678888  9999999999999999999987654  778887652 21    2334456666665443333444


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++.....       +...+..+..+.+.+.++..++  ++...+.+.++|+|+.|+     |+...++++++|||++++
T Consensus        89 e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L  159 (210)
T cd03269          89 DQLVYLAQ-------LKGLKKEEARRRIDEWLERLEL--SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL  159 (210)
T ss_pred             HHHHHHHH-------HcCCChHHHHHHHHHHHHHcCC--hHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            44332211       1223344555677778888887  556667788999999888     566668899999999999


Q ss_pred             cCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       160 D~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  201 (210)
T cd03269         160 DPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLL  201 (210)
T ss_pred             CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEE
Confidence            999988888888887653    77999999988888876544

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.73  E-value=2e-20  Score=165.49  Aligned_cols=178  Identities=15%  Similarity=0.173  Sum_probs=135.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+.+|++  ++|.||||||||||+++|++...++  .|.+++.+......   ..+.+.+++|+..++...+.
T Consensus        18 vl~~vsl~i~~Ge~--~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~---~~~~i~~v~Q~~~l~~~~tv   92 (369)
T PRK11000         18 ISKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP---AERGVGMVFQSYALYPHLSV   92 (369)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH---hHCCEEEEeCCcccCCCCCH
Confidence            44556666688998  9999999999999999999988765  77788754321111   12457777777666655566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..++.       ....+..+..+.+...++..++  ++...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus        93 ~eni~~~~~-------~~~~~~~~~~~~~~~~l~~lgL--~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~  163 (369)
T PRK11000         93 AENMSFGLK-------LAGAKKEEINQRVNQVAEVLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSN  163 (369)
T ss_pred             HHHHHhHHh-------hcCCCHHHHHHHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            666655443       2234555666778888888887  555667788999999988     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       164 LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl  207 (369)
T PRK11000        164 LDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL  207 (369)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999998888888888654     78999999999999988755

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.73  E-value=1.4e-19  Score=152.01  Aligned_cols=189  Identities=20%  Similarity=0.189  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      .+.+.++..+.+|++  ++|.||||||||||+++|++...+.  .|.+++.+.  ........+++.+.+++++..++..
T Consensus        16 ~il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   93 (243)
T TIGR02315        16 QALKNINLNINPGEF--VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER   93 (243)
T ss_pred             ceeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence            356666777789999  9999999999999999999987654  777887542  1222223356667888887666554


Q ss_pred             eCCCCCCcHHHhccccee-ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          97 ANSMSQVIPAIRSRCLCI-RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      .+..+++..+.......+ .+......+..+.+...++..++  +....+.+.++|+|+.||     |+...|+++++||
T Consensus        94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE  171 (243)
T TIGR02315        94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL--ADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE  171 (243)
T ss_pred             ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            555555533211100000 00011122334556677777777  455556678899999888     6667789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       172 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l  219 (243)
T TIGR02315       172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGL  219 (243)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            99999999999999999888653     67999999998989987755

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.73  E-value=3.2e-19  Score=155.50  Aligned_cols=186  Identities=15%  Similarity=0.159  Sum_probs=140.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCc--EEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTC--RLIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~--~~i~   95 (287)
                      +++.++..+.+|++  +.|.||||||||||+++|++.+.+.  .|.+|+.+.  +.......+++.+.+++|++  .+..
T Consensus        36 ~l~~vsl~i~~Ge~--~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  113 (331)
T PRK15079         36 AVDGVTLRLYEGET--LGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP  113 (331)
T ss_pred             EEeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence            45556666688999  9999999999999999999988654  778887653  22333334555677888775  3444


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++..++...     ....+.++..+.+...++..++. ++....++.++|+|+.||     |+...|.++++||
T Consensus       114 ~~tv~~~i~~~l~~~-----~~~~~~~~~~~~~~~~l~~vgl~-~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDE  187 (331)
T PRK15079        114 RMTIGEIIAEPLRTY-----HPKLSRQEVKDRVKAMMLKVGLL-PNLINRYPHEFSGGQCQRIGIARALILEPKLIICDE  187 (331)
T ss_pred             CCCHHHHHHHHHHHh-----ccCCCHHHHHHHHHHHHHHcCCC-hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            455556665554311     11346667777888888888872 234567788999999988     7777889999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      |++++|......+.+.+.++.++     ++++|+...+..++++++.|..
T Consensus       188 Pts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~  237 (331)
T PRK15079        188 PVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL  237 (331)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999999998764     7899999999999998875533

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=3.7e-19  Score=158.07  Aligned_cols=172  Identities=12%  Similarity=0.180  Sum_probs=130.4

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHH-HHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQAL-RRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l-~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                      ++|++  ++|.||||||||||+++|++.+.+.  .|.+++.+.  +.......+ ++.+.+++|+..++...+..+++..
T Consensus        52 ~~Gei--~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~  129 (400)
T PRK10070         52 EEGEI--FVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAF  129 (400)
T ss_pred             cCCCE--EEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHH
Confidence            67888  9999999999999999999988765  778887653  222222222 2357777877666555566666654


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccC
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVE  180 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~  180 (287)
                      +..       +...+.++..+.+.+.++..|+  ++...+.+.++|+|+.||     |+...|.++++|||++++|+...
T Consensus       130 ~~~-------~~~~~~~~~~~~~~e~L~~~gL--~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r  200 (400)
T PRK10070        130 GME-------LAGINAEERREKALDALRQVGL--ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIR  200 (400)
T ss_pred             HHH-------hcCCCHHHHHHHHHHHHHHcCC--ChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHH
Confidence            432       2234445566677788888888  566677788999999988     67777899999999999999999


Q ss_pred             ccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         181 PDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       181 ~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ..+.+.+.++.++     ++++|+.+.+..++++++.+
T Consensus       201 ~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL  238 (400)
T PRK10070        201 TEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIM  238 (400)
T ss_pred             HHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEE
Confidence            9999999888653     78999999999999988744

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.73  E-value=3.1e-20  Score=163.37  Aligned_cols=190  Identities=16%  Similarity=0.154  Sum_probs=146.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +++.++..+..|++  +.|.||||||||||+++|++...++    .|.+++.+.....   ...+.+.+++|+..++...
T Consensus        20 ~l~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~---~~~r~ig~vfQ~~~l~p~~   94 (362)
T TIGR03258        20 VLDDLSLEIEAGEL--LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP---PHKRGLALLFQNYALFPHL   94 (362)
T ss_pred             EEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCC---HHHCCEEEEECCcccCCCC
Confidence            34455555678888  9999999999999999999987643    5778875532111   1235578888888877777


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+|+..+++       ....+..+..+.+..+++..++  ++...+.+.++|+|+.||     |+...|+++++|||+
T Consensus        95 tv~enl~~~l~-------~~~~~~~~~~~~v~~~l~~~gL--~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~  165 (362)
T TIGR03258        95 KVEDNVAFGLR-------AQKMPKADIAERVADALKLVGL--GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPL  165 (362)
T ss_pred             cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhcCC--CchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            88888877665       2345666777788888888887  566778889999999888     777889999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH------HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL------IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~------i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      +++|......+.+.+.++.++      ++++|+..++..++|++..+-.+.+    +++++..
T Consensus       166 s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~  228 (362)
T TIGR03258       166 SALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD  228 (362)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999888763      7799999999999998875533222    5555544

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.73  E-value=5.1e-20  Score=151.56  Aligned_cols=178  Identities=13%  Similarity=0.165  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|++  ++|.||||+|||||++++++.+.+.  .|.+|+.+......   ..+.+.+++++..++...+.
T Consensus        15 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~~tv   89 (213)
T cd03301          15 ALDDLNLDIADGEF--VVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP---KDRDIAMVFQNYALYPHMTV   89 (213)
T ss_pred             eeeceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---ccceEEEEecChhhccCCCH
Confidence            45556666688998  9999999999999999999987654  67788755211110   11345555665544333344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +.....++..+.+...++..|+  ++...+.+.++|+|+.|+     |+...|+++++|||+++
T Consensus        90 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~  160 (213)
T cd03301          90 YDNIAFGLK-------LRKVPKDEIDERVREVAELLQI--EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSN  160 (213)
T ss_pred             HHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--HHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            444433221       2223445566677778888887  455667778999999888     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|+.....+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       161 LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  204 (213)
T cd03301         161 LDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVM  204 (213)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            9999999999999888753     77999999888888876543

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.73  E-value=5.9e-20  Score=150.43  Aligned_cols=176  Identities=16%  Similarity=0.132  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHH-HHHHHHHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTRE-AQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~-~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||++++++.+.+.  .|.+++.+.  +... .....++.+.++++...++..
T Consensus        13 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~   90 (206)
T TIGR03608        13 ILDDLNLTIEKGKM--YAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIEN   90 (206)
T ss_pred             EEeceEEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccC
Confidence            44555566678988  9999999999999999999987654  677887652  2221 122344557777776655444


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++.....       .......+..+.+...++..|+  ++...+.+.++|+|+.|+     |+...|+++++|||
T Consensus        91 ~t~~e~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEP  161 (206)
T TIGR03608        91 ETVEENLDLGLK-------YKKLSKKEKREKKKEALEKVGL--NLKLKQKIYELSGGEQQRVALARAILKDPPLILADEP  161 (206)
T ss_pred             CcHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCc--hhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            455555443221       1123344555667778888787  555667788999999888     77777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTR  209 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~  209 (287)
                      ++++|......+.+.+.++.+.    ++++|+.... ..+++
T Consensus       162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~  202 (206)
T TIGR03608       162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADR  202 (206)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCE
Confidence            9999999998888888888653    6788988644 34443

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.72  E-value=7.8e-20  Score=155.57  Aligned_cols=181  Identities=13%  Similarity=0.158  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC--HHHHHHH-HHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT--REAQQAL-RRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~--~~~~~~l-~~~i~~~~~~~~~i~~   96 (287)
                      +++.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+|+.+.-.  ......+ .+.+.+++++..++..
T Consensus        39 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  116 (269)
T cd03294          39 GVNDVSLDVREGEI--FVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPH  116 (269)
T ss_pred             EeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCC
Confidence            34455555578888  9999999999999999999988654  67788754321  1111111 2346666776655444


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++.....       +...+..+..+.+...++..++  .+...+.+.++|+|+.|+     |+...|.++++|||
T Consensus       117 ~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEP  187 (269)
T cd03294         117 RTVLENVAFGLE-------VQGVPRAEREERAAEALELVGL--EGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEA  187 (269)
T ss_pred             CcHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--HhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            455555543322       2223344455667778888787  555667778899999888     67777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.+.     ++++|+.+.+..++|+++.+
T Consensus       188 t~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l  234 (269)
T cd03294         188 FSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM  234 (269)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            9999999999999999888643     78999999999999987754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.72  E-value=5e-16  Score=141.43  Aligned_cols=229  Identities=16%  Similarity=0.191  Sum_probs=150.6

Q ss_pred             CCCCccC---cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhCC---C---------------------
Q psy2281          12 NLQKLDF---HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELYG---P---------------------   62 (287)
Q Consensus        12 ~~~~~~~---~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~---------------------   62 (287)
                      +|++++.   +..+......+.+. |. .++++|+||+|+|||+|++++++.+..   .                     
T Consensus       120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~  199 (450)
T PRK00149        120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRN  199 (450)
T ss_pred             cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHc
Confidence            5777553   33456666666643 22 234999999999999999999987621   1                     


Q ss_pred             --------------EEEEeCCCCCCH--HHHHHHHHHHHhccCC-cEEEEEeCCCC----CCcHHHhccc---ceeecCC
Q psy2281          63 --------------VIILNETDHLTR--EAQQALRRTMEKYITT-CRLILCANSMS----QVIPAIRSRC---LCIRIPA  118 (287)
Q Consensus        63 --------------~i~ide~d~l~~--~~~~~l~~~i~~~~~~-~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~  118 (287)
                                    +++|||++.+..  ..+..+...+...... ..++++++..+    .+.+.++||+   .++.+.+
T Consensus       200 ~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~  279 (450)
T PRK00149        200 NTMEEFKEKYRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEP  279 (450)
T ss_pred             CcHHHHHHHHhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecC
Confidence                          899999998753  3456677766655433 34666665543    2667899999   4689999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhcc
Q psy2281         119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQ  198 (287)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~  198 (287)
                      |+.+++.++++..++..++.+++++++++++.+.||.|.+...+..+....... . ...+.    ..++++...++..+
T Consensus       280 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~-~-~~it~----~~~~~~l~~~~~~~  353 (450)
T PRK00149        280 PDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLT-G-KPITL----ELAKEALKDLLAAQ  353 (450)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhh-C-CCCCH----HHHHHHHHHhhccC
Confidence            999999999999999999999999999999999999999666666554332110 0 11222    23444443332211


Q ss_pred             C-hhHHHHHHHHHHHHHhcCCCHHHH-----------HHHHHHHHHHhCChHHHHHHHHHHH
Q psy2281         199 S-PKKLLEVRTRLYELLVHSIPVNVL-----------FKYLLEGLLANCDSDLKSKSIEMAA  248 (287)
Q Consensus       199 ~-~~~~~~~~~~~~~l~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~~~~  248 (287)
                      . .-..+.+.+.+.+  ..|++++++           ..++..|+++.+...+..++.+.++
T Consensus       354 ~~~~~~~~i~~~v~~--~~~i~~~~l~~~~R~~~~~~aR~iamyl~~~~~~~s~~~Ig~~fg  413 (450)
T PRK00149        354 KKKITIENIQKVVAE--YYNIKVSDLKSKSRTRNIARPRQIAMYLAKELTDLSLPEIGRAFG  413 (450)
T ss_pred             CCCCCHHHHHHHHHH--HcCCCHHHHhCCCCCcccChHHHHHHHHHHHhcCCCHHHHHHHcC
Confidence            1 1122333333322  234444443           4599999999877777777777764

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.72  E-value=7.7e-20  Score=152.88  Aligned_cols=188  Identities=15%  Similarity=0.148  Sum_probs=129.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++.+.+.  .|.+++.+.-........+..+.+++++..++...+.
T Consensus        15 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   92 (236)
T cd03219          15 ALDDVSFSVRPGEI--HGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTV   92 (236)
T ss_pred             EecCceEEecCCcE--EEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCH
Confidence            45566666788999  9999999999999999999987654  6778875422111111122346666776655544455


Q ss_pred             CCCCcHHHhccc-ceeec--CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281         100 MSQVIPAIRSRC-LCIRI--PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus       100 ~~~l~~~l~sr~-~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+++......+. ..+..  ......+....+.+.++..|+  ++.....+.++|+|+.|+     |+...|.++++|||
T Consensus        93 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP  170 (236)
T cd03219          93 LENVMVAAQARTGSGLLLARARREEREARERAEELLERVGL--ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP  170 (236)
T ss_pred             HHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCc--cchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            555543322110 00000  001233455567777888787  455567788999999988     66667899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       171 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l  216 (236)
T cd03219         171 AAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVL  216 (236)
T ss_pred             cccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            9999999998888888888643    77999999999988887755

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.72  E-value=3.3e-19  Score=147.47  Aligned_cols=175  Identities=14%  Similarity=0.123  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+...      ..+.+.+++++..++...+.
T Consensus        19 il~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~------~~~~i~~v~q~~~~~~~~tv   90 (220)
T cd03293          19 ALEDISLSVEEGEF--VALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG------PGPDRGYVFQQDALLPWLTV   90 (220)
T ss_pred             EEeceeEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc------ccCcEEEEecccccccCCCH
Confidence            44556666688998  9999999999999999999987654  67788755311      12345666666544433344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..+..       +...+.....+.+...++..++  ++...+.+.++|+|+.|+     |+...|.++++|||+++
T Consensus        91 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~  161 (220)
T cd03293          91 LDNVALGLE-------LQGVPKAEARERAEELLELVGL--SGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA  161 (220)
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence            444433222       1223344455667778888887  455566678899999888     66677899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       162 LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  205 (220)
T cd03293         162 LDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL  205 (220)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            9999999999999888543     77999999888888876544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.72  E-value=2.3e-19  Score=144.99  Aligned_cols=169  Identities=15%  Similarity=0.085  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcE-EEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCR-LILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~-~i~~~   97 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+.. .......+++.+.+++++.. .++..
T Consensus         7 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~   84 (190)
T TIGR01166         7 VLKGLNFAAERGEV--LALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA   84 (190)
T ss_pred             eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence            45556666788999  9999999999999999999987654  6778875531 11122334556777777652 23333


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..+..       ....+.++..+.+...++..++  ++...+.+.++|+|+.||     |+...|.++++|||+
T Consensus        85 tv~~nl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt  155 (190)
T TIGR01166        85 DVDQDVAFGPL-------NLGLSEAEVERRVREALTAVGA--SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT  155 (190)
T ss_pred             cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCc--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence            44455433211       1123445556667778888777  455667788999999888     666678999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChh
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPK  201 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~  201 (287)
                      +++|......+.+.+.++.+.    ++++|+.+
T Consensus       156 ~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       156 AGLDPAGREQMLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             ccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence            999999988888888887653    66777764

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.72  E-value=5.2e-16  Score=140.23  Aligned_cols=237  Identities=14%  Similarity=0.126  Sum_probs=149.7

Q ss_pred             CCCCccCc---HHHHHHHHHHHh-cCCCCcEEEeCCCCCcHHHHHHHHHHHhC---------------------------
Q psy2281          12 NLQKLDFH---CKQANHLRNLLK-EGDFPHLLFYGPSGAGKKTRIMALLKELY---------------------------   60 (287)
Q Consensus        12 ~~~~~~~~---~~~~~~l~~~~~-~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---------------------------   60 (287)
                      +|++++..   ..+......+.. .|..++++|+||+|+|||+|++++++.+.                           
T Consensus       103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~  182 (440)
T PRK14088        103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEG  182 (440)
T ss_pred             cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcc
Confidence            57776632   234455555554 44445599999999999999999998642                           


Q ss_pred             ------------CCEEEEeCCCCCCH--HHHHHHHHHHHhccCC-cEEEEEeCCCC----CCcHHHhcccc---eeecCC
Q psy2281          61 ------------GPVIILNETDHLTR--EAQQALRRTMEKYITT-CRLILCANSMS----QVIPAIRSRCL---CIRIPA  118 (287)
Q Consensus        61 ------------~~~i~ide~d~l~~--~~~~~l~~~i~~~~~~-~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~  118 (287)
                                  ++++++||++.+..  ..+..+...+...... ..++++++..+    .+.+.++||+.   ++.+.+
T Consensus       183 ~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~  262 (440)
T PRK14088        183 KLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP  262 (440)
T ss_pred             cHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCC
Confidence                        11799999997642  2456676766655443 34556554432    36678999985   789999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhcc
Q psy2281         119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQ  198 (287)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~  198 (287)
                      |+.+.+.+++++.++..++.+++++..++++.+.|++|.....+.++........  .+.+.    ..+.++.+.++...
T Consensus       263 pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~--~~it~----~~a~~~L~~~~~~~  336 (440)
T PRK14088        263 PDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTG--EEVDL----KEAILLLKDFIKPN  336 (440)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhC--CCCCH----HHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999996655555443211000  01222    22333333332211


Q ss_pred             C---hhHHHHHHHHHHHHHhcCCCHHHH-----------HHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhc
Q psy2281         199 S---PKKLLEVRTRLYELLVHSIPVNVL-----------FKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHK  256 (287)
Q Consensus       199 ~---~~~~~~~~~~~~~l~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  256 (287)
                      .   .-..+.+.+.+.+  ..|++++++           ..++..|+++++...+...+.+.++..+..+..
T Consensus       337 ~~~~~i~~~~I~~~V~~--~~~i~~~~l~s~~R~~~i~~aR~iamyl~r~~~~~s~~~Ig~~fgr~hstV~~  406 (440)
T PRK14088        337 RVKAMDPIDELIEIVAK--VTGVSREEILSNSRNVKALLARRIGMYVAKNYLGSSLRTIAEKFNRSHPVVVD  406 (440)
T ss_pred             cccCCCCHHHHHHHHHH--HcCCcHHHHhCCCCCccccHHHHHHHHHHHHHhCCCHHHHHHHhCCCHHHHHH
Confidence            1   0122333333322  124444443           358899999877666677777766643443333

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.72  E-value=1.4e-18  Score=144.91  Aligned_cols=178  Identities=17%  Similarity=0.141  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALR-RTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.  .+......++ +.+.+++++..++..
T Consensus        24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~  101 (233)
T PRK11629         24 VLHNVSFSIGEGEM--MAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD  101 (233)
T ss_pred             eEEeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence            45556666688998  9999999999999999999987655  778887553  2222222232 346777777655444


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++..+..       +...+.++..+.+.+.++..|+  ++...+.+.++|+|+.|+     |+...|+++++|||
T Consensus       102 ~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEP  172 (233)
T PRK11629        102 FTALENVAMPLL-------IGKKKPAEINSRALEMLAAVGL--EHRANHRPSELSGGERQRVAIARALVNNPRLVLADEP  172 (233)
T ss_pred             CCHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            455555543322       2223444556677888888887  555566788999999888     66667899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~  211 (287)
                      ++++|......+.+.+.++.+.     ++++|+.+.+..+ ++++
T Consensus       173 t~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~  216 (233)
T PRK11629        173 TGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQL  216 (233)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEE
Confidence            9999999999999999888642     7799999887765 3443

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.72  E-value=3.3e-19  Score=150.35  Aligned_cols=184  Identities=17%  Similarity=0.114  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH-------HHHHHHHHHHHhccCCc
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR-------EAQQALRRTMEKYITTC   91 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~-------~~~~~l~~~i~~~~~~~   91 (287)
                      .+.+.++..+++|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-..       .....+++.+.+++++.
T Consensus        17 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~   94 (250)
T PRK11264         17 TVLHGIDLEVKPGEV--VAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF   94 (250)
T ss_pred             eeeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence            355666667788999  9999999999999999999987654  777887653211       11233455677777776


Q ss_pred             EEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          92 RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        92 ~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      .++...+..+++.....      .+.....++..+.+...++..|+  .+.....+.++|+|+.||     |+...|.++
T Consensus        95 ~~~~~~tv~e~l~~~~~------~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~Gq~qrv~la~al~~~p~ll  166 (250)
T PRK11264         95 NLFPHRTVLENIIEGPV------IVKGEPKEEATARARELLAKVGL--AGKETSYPRRLSGGQQQRVAIARALAMRPEVI  166 (250)
T ss_pred             ccCCCCCHHHHHHHHHH------HhcCCCHHHHHHHHHHHHHHcCC--cchhhCChhhCChHHHHHHHHHHHHhcCCCEE
Confidence            55444455455433211      01223444555667777887787  455566788999999888     667778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|||++++|......+.+.+.++.+.    ++++|+...+..++++++.+-
T Consensus       167 lLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~  218 (250)
T PRK11264        167 LFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD  218 (250)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            999999999999998888888888754    779999999999899877553

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.72  E-value=4.2e-16  Score=146.00  Aligned_cols=161  Identities=22%  Similarity=0.308  Sum_probs=129.1

Q ss_pred             ccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC------------------------
Q psy2281           5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY------------------------   60 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~------------------------   60 (287)
                      .+.+||++|++++|+......+...+..+..++++|+|||||||||+++++.+...                        
T Consensus       145 ~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d  224 (615)
T TIGR02903       145 QSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD  224 (615)
T ss_pred             hhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC
Confidence            45699999999999998887777777656556699999999999999998864331                        


Q ss_pred             -----------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHhcc-----------
Q psy2281          61 -----------------------------------------GPVIILNETDHLTREAQQALRRTMEKYI-----------   88 (287)
Q Consensus        61 -----------------------------------------~~~i~ide~d~l~~~~~~~l~~~i~~~~-----------   88 (287)
                                                               +.++++||++.++...|..|++.++.-.           
T Consensus       225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~  304 (615)
T TIGR02903       225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD  304 (615)
T ss_pred             HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence                                                     0178999999999999999988886411           


Q ss_pred             ---------------CCcEEEEE--eC-CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy2281          89 ---------------TTCRLILC--AN-SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ  150 (287)
Q Consensus        89 ---------------~~~~~i~~--~~-~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~  150 (287)
                                     ....++++  ++ ..+.+.++++|||..+.|.+++.+++..++.+.+++.++.+++++.+.+.++
T Consensus       305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~y  384 (615)
T TIGR02903       305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARY  384 (615)
T ss_pred             CcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHC
Confidence                           11224443  22 3456889999999999999999999999999999988888899999999988


Q ss_pred             cCCcHHHHHHHHHHHh
Q psy2281         151 SDRNLRRAILMCEASK  166 (287)
Q Consensus       151 s~G~~r~al~~l~~~~  166 (287)
                      +. +.|++++.+..+.
T Consensus       385 s~-~gRraln~L~~~~  399 (615)
T TIGR02903       385 TI-EGRKAVNILADVY  399 (615)
T ss_pred             CC-cHHHHHHHHHHHH
Confidence            76 5799999887664

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.72  E-value=5e-19  Score=152.90  Aligned_cols=179  Identities=17%  Similarity=0.149  Sum_probs=134.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  ++|.||||+|||||++++++...++  .|.+++.+... . ...+++.+.+.+++..++...+.
T Consensus        17 ~l~~is~~i~~Gei--~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~-~~~~~~~ig~~~q~~~l~~~~tv   92 (301)
T TIGR03522        17 ALDEVSFEAQKGRI--VGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-N-PKEVQRNIGYLPEHNPLYLDMYV   92 (301)
T ss_pred             EEEEeEEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-C-hHHHHhceEEecCCCCCCCCCcH
Confidence            44455556688999  9999999999999999999987765  77788765322 1 22455668888877655544455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+.++..+.+...++..|+  ++...+.+..+|+|+.||     |+...|+++++|||+++
T Consensus        93 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~g  163 (301)
T TIGR03522        93 REYLQFIAG-------IYGMKGQLLKQRVEEMIELVGL--RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTG  163 (301)
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--chHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            555432211       2234445566677888888887  566677888999999888     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|+.....+.+.+.++.+.   ++++|+...+..+++++..+
T Consensus       164 LD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l  205 (301)
T TIGR03522       164 LDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIII  205 (301)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            9999988888888887543   77999999999999988744

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.71  E-value=9.7e-19  Score=136.18  Aligned_cols=213  Identities=13%  Similarity=0.049  Sum_probs=149.0

Q ss_pred             CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281          11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI   88 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~   88 (287)
                      ++++..++...+++.++..+.+|.+  ..|.||||+|||||+..+++.+..+  .|.+|+.+.-. -..+.|.+.+....
T Consensus         5 ~nv~K~y~~~~vl~~isl~i~~g~i--Ts~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~-~~s~~LAk~lSILk   81 (252)
T COG4604           5 ENVSKSYGTKVVLDDVSLDIPKGGI--TSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS-TPSKELAKKLSILK   81 (252)
T ss_pred             hhhhHhhCCEEeeccceeeecCCce--eEEECCCCccHHHHHHHHHHhccccCceEEEeeeeccc-CChHHHHHHHHHHH
Confidence            3455556666777788888889999  9999999999999999999998766  89999877433 22345566666655


Q ss_pred             CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH-----HHH
Q psy2281          89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAIL-----MCE  163 (287)
Q Consensus        89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~-----~l~  163 (287)
                      |...+..-.++.+-+.++   |+.+- -..++. +-...+...++-.++  ++-..+++.++|||+.|||..     ...
T Consensus        82 Q~N~i~~rlTV~dLv~FG---RfPYS-qGRlt~-eD~~~I~~aieyl~L--~~l~dryLd~LSGGQrQRAfIAMVlaQdT  154 (252)
T COG4604          82 QENHINSRLTVRDLVGFG---RFPYS-QGRLTK-EDRRIINEAIEYLHL--EDLSDRYLDELSGGQRQRAFIAMVLAQDT  154 (252)
T ss_pred             hhchhhheeEHHHHhhcC---CCccc-CCCCch-HHHHHHHHHHHHhcc--cchHHHhHHhcccchhhhhhhheeeeccC
Confidence            555444434443333221   22111 112333 445566666666666  778889999999999999433     334


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV-----HSIPVNVLFKYLLEGLLA  233 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~i~~~~~~~~~~  233 (287)
                      ..+++|||.+.+|-.-...+++.++.++++     +++-|+.+.+..+.|.+..+.+     .|.+.+.+-.++...++.
T Consensus       155 dyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~eiyd  234 (252)
T COG4604         155 DYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIYD  234 (252)
T ss_pred             cEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHHhc
Confidence            677899999999988888888899988887     6688999999999999886543     343434444566666664

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.71  E-value=9.3e-19  Score=151.10  Aligned_cols=182  Identities=17%  Similarity=0.108  Sum_probs=135.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC-----------------------HHH
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT-----------------------REA   76 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~-----------------------~~~   76 (287)
                      +++.++..+.+|+.  ++|.||||+|||||+++|++.+.+.  .|.+++.+.-.                       ...
T Consensus        22 ~l~~vsl~i~~Ge~--v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (305)
T PRK13651         22 ALDNVSVEINQGEF--IAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK   99 (305)
T ss_pred             ceeeeEEEEeCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence            45566666788999  9999999999999999999988765  67776533210                       011


Q ss_pred             HHHHHHHHHhccCCcE-EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH
Q psy2281          77 QQALRRTMEKYITTCR-LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNL  155 (287)
Q Consensus        77 ~~~l~~~i~~~~~~~~-~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~  155 (287)
                      ...+++.+++++|++. .++..+..+++..+...       ...+.++..+.+...++..|+. .+...+.+..+|+|+.
T Consensus       100 ~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~-------~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGqk  171 (305)
T PRK13651        100 IKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS-------MGVSKEEAKKRAAKYIELVGLD-ESYLQRSPFELSGGQK  171 (305)
T ss_pred             HHHHHhceEEEeeCcccccccccHHHHHHhhHHH-------cCCCHHHHHHHHHHHHHHcCCC-hhhhhCChhhCCHHHH
Confidence            2345667888888742 23334555555443321       2345667777888888888883 1445677889999998


Q ss_pred             HH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         156 RR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       156 r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||     ++...|.++++|||++++|+.....+.+.+.++.+.    ++++|+.+.+...+|+++.+
T Consensus       172 qrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl  238 (305)
T PRK13651        172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF  238 (305)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence            88     777788999999999999999988888888888753    78999999999999988755

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.71  E-value=1.4e-19  Score=151.84  Aligned_cols=188  Identities=19%  Similarity=0.170  Sum_probs=131.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-  .......+++.+.+++++..++...
T Consensus        16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (241)
T cd03256          16 ALKDVSLSINPGEF--VALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL   93 (241)
T ss_pred             EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccC
Confidence            45566666788999  9999999999999999999987654  6778875522  1111234556678888876655545


Q ss_pred             CCCCCCcHHHhccccee-ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          98 NSMSQVIPAIRSRCLCI-RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      +..+++..+.......+ .+.........+.+...++..++  .+...+.+.++|+|+.||     |+...|.++++|||
T Consensus        94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP  171 (241)
T cd03256          94 SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL--LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEP  171 (241)
T ss_pred             cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC--hhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            55555543322110000 01111112334556677777777  445556678899999888     66667899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       172 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l  218 (241)
T cd03256         172 VASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGL  218 (241)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999999999999988653     77999999999899987755

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14700 recombination factor protein RarA; Provisional

Probab=99.71  E-value=1.3e-16  Score=133.38  Aligned_cols=163  Identities=10%  Similarity=0.079  Sum_probs=121.4

Q ss_pred             cEEEEEeCCCCC----CcHHHhcccceeecCCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHHcCCcHHHHHH
Q psy2281          91 CRLILCANSMSQ----VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE------GLTIPPEFALRLAQQSDRNLRRAIL  160 (287)
Q Consensus        91 ~~~i~~~~~~~~----l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~s~G~~r~al~  160 (287)
                      +.+++++...+|    +.++++|||+++.|++++.+++...+++.+...      .+.+++++++.+++.|+||.|+|++
T Consensus         7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN   86 (300)
T PRK14700          7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILN   86 (300)
T ss_pred             CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence            344444444333    899999999999999999999999999998752      3578999999999999999999999


Q ss_pred             HHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHH
Q psy2281         161 MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLK  240 (287)
Q Consensus       161 ~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~  240 (287)
                      .++.++.....   .+.  .....+.+++....     ..-...+-.|..|++++.              +.|++    +
T Consensus        87 ~LE~a~~~~~~---~~~--~~it~~~~~~~~~~-----~~~~yDk~gd~HYd~iSA--------------f~KSi----R  138 (300)
T PRK14700         87 LLERMFLISTR---GDE--IYLNKELFDQAVGE-----TSRDFHREGKEFYEQLSA--------------FHKSV----R  138 (300)
T ss_pred             HHHHHHhhccc---cCC--CccCHHHHHHHHhH-----HHhcccCCcchhHHHHHH--------------HHHHh----h
Confidence            99986532110   011  01112233332221     112334456677777664              77777    8


Q ss_pred             HHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2281         241 SKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN  285 (287)
Q Consensus       241 ~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~  285 (287)
                      .+..+++.+|.+||..|++|+.    ||+|++.+++++||||||.
T Consensus       139 GSDpDAAlYyLArml~~GEDp~----~IaRRLii~AsEDIGlAdP  179 (300)
T PRK14700        139 GTDPDAAIFWLSVMLDNGVDPL----VIARRMLCIASEDIGNADP  179 (300)
T ss_pred             cCCccHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhhccCCCH
Confidence            8889999999999999998887    9999999999999999984

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.71  E-value=8e-20  Score=153.03  Aligned_cols=183  Identities=17%  Similarity=0.180  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-....   .++.+.+++++..++...+
T Consensus        16 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~v~q~~~~~~~~t   90 (239)
T cd03296          16 VALDDVSLDIPSGEL--VALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV---QERNVGFVFQHYALFRHMT   90 (239)
T ss_pred             EeeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc---cccceEEEecCCcccCCCC
Confidence            345566666788999  9999999999999999999987654  67788754211110   1234566666655443344


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++......+. .  +...+..+..+.+...++..++  ++...+.+.++|+|+.||     |+...+.++++|||++
T Consensus        91 v~e~l~~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~  165 (239)
T cd03296          91 VFDNVAFGLRVKP-R--SERPPEAEIRAKVHELLKLVQL--DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG  165 (239)
T ss_pred             HHHHHhhhhhhcc-c--cccCCHHHHHHHHHHHHHHcCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            4455433221000 0  0111334445567777888887  555566788999999888     6666789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     |+++|+...+...+++++.+
T Consensus       166 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l  210 (239)
T cd03296         166 ALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM  210 (239)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999999999988753     78999999998888887755

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=2.2e-19  Score=150.60  Aligned_cols=184  Identities=16%  Similarity=0.150  Sum_probs=130.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+++.+..........++.+.+++++..++...+.
T Consensus        18 ~l~~~sl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   95 (241)
T PRK10895         18 VVEDVSLTVNSGEI--VGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSV   95 (241)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCcccccCcH
Confidence            45566666788999  9999999999999999999987654  6778875532211122234456777776655443445


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....  .    ....+.++....+...++..++  ++.....+.++|+|+.|+     |+...+.++++|||+++
T Consensus        96 ~enl~~~~~--~----~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  167 (241)
T PRK10895         96 YDNLMAVLQ--I----RDDLSAEQREDRANELMEEFHI--EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAG  167 (241)
T ss_pred             HHHHhhhhh--c----ccccCHHHHHHHHHHHHHHcCC--HHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            455433211  0    0112334455667777887777  555567788999999888     66677899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHh
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      +|......+.+.+.++.+.    ++++|+...+...+++++.+-.
T Consensus       168 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~  212 (241)
T PRK10895        168 VDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQ  212 (241)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence            9999888888888887654    7799999999999888765533

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.71  E-value=2.2e-19  Score=150.44  Aligned_cols=182  Identities=16%  Similarity=0.147  Sum_probs=132.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR-EAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.... .....+++.+.+++++..++...+
T Consensus        16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   93 (240)
T PRK09493         16 VLHNIDLNIDQGEV--VVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLT   93 (240)
T ss_pred             EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCCCCc
Confidence            45566666688999  9999999999999999999987654  788887653211 122334556777777765554445


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++..+..      .+...+..+....+.+.++..|+  ++...+.+..+|+|+.|+     |+...|.++++|||++
T Consensus        94 v~~~l~~~~~------~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~  165 (240)
T PRK09493         94 ALENVMFGPL------RVRGASKEEAEKQARELLAKVGL--AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTS  165 (240)
T ss_pred             HHHHHHhHHH------HhcCCCHHHHHHHHHHHHHHcCC--hHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            5555433211      01123445555667778888777  555667788999999888     6666788999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       166 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  209 (240)
T PRK09493        166 ALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFI  209 (240)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999998888888888653    77999999999888887755

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.71  E-value=6.9e-19  Score=150.47  Aligned_cols=179  Identities=16%  Similarity=0.132  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +++.++..+.+|+.  ++|.||||+|||||++++++.+.+.  .|++|+.+. .......+++.+.++++++. .++..+
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~~~~~~~t   98 (279)
T PRK13650         22 TLNDVSFHVKQGEW--LSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLL-TEENVWDIRHKIGMVFQNPDNQFVGAT   98 (279)
T ss_pred             eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEC-CcCcHHHHHhhceEEEcChHHhccccc
Confidence            45556666688999  9999999999999999999988655  788888653 22223345667888888752 444445


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++..+..       ....+.++..+.+...++..|+  ++...+.+.++|+|+.|+     |+...|.++++|||++
T Consensus        99 v~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~  169 (279)
T PRK13650         99 VEDDVAFGLE-------NKGIPHEEMKERVNEALELVGM--QDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATS  169 (279)
T ss_pred             HHHHHHhhHH-------hCCCCHHHHHHHHHHHHHHCCC--HhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence            5566543322       1234566667778888888887  555667778999999888     7777889999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     ++++|+.+.+. .+++++.+
T Consensus       170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l  213 (279)
T PRK13650        170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVM  213 (279)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE
Confidence            99999998898999988753     67999998884 68877644

>PRK09087 hypothetical protein; Validated

Probab=99.71  E-value=3.8e-16  Score=129.00  Aligned_cols=152  Identities=14%  Similarity=0.208  Sum_probs=116.6

Q ss_pred             CCCCccC---cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC------------------CEEEEeCCC
Q psy2281          12 NLQKLDF---HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------------------PVIILNETD   70 (287)
Q Consensus        12 ~~~~~~~---~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------~~i~ide~d   70 (287)
                      +|++++.   +..+...+..+... ..|.++|+||+|+|||||+++++.....                  ..+++||++
T Consensus        19 ~~~~Fi~~~~N~~a~~~l~~~~~~-~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~   97 (226)
T PRK09087         19 GRDDLLVTESNRAAVSLVDHWPNW-PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDID   97 (226)
T ss_pred             ChhceeecCchHHHHHHHHhcccC-CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCC
Confidence            6888774   44556666554422 2334999999999999999999855332                  168999999


Q ss_pred             CCCHHHHHHHHHHHHhccCC-cEEEEEeCCCC----CCcHHHhccc---ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH
Q psy2281          71 HLTREAQQALRRTMEKYITT-CRLILCANSMS----QVIPAIRSRC---LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE  142 (287)
Q Consensus        71 ~l~~~~~~~l~~~i~~~~~~-~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  142 (287)
                      .+.. .+..+...+....+. ..++++++...    ...+.++||+   .++.+.+|+.+++..++++.++..++.++++
T Consensus        98 ~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~e  176 (226)
T PRK09087         98 AGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPH  176 (226)
T ss_pred             CCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence            7643 356688888776654 44555555432    2468899999   6899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHH
Q psy2281         143 FALRLAQQSDRNLRRAILMCEAS  165 (287)
Q Consensus       143 ~~~~l~~~s~G~~r~al~~l~~~  165 (287)
                      +.+++++.+.|+++.++..+..+
T Consensus       177 v~~~La~~~~r~~~~l~~~l~~L  199 (226)
T PRK09087        177 VVYYLVSRMERSLFAAQTIVDRL  199 (226)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999999999977655544

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.71  E-value=2e-19  Score=149.54  Aligned_cols=181  Identities=18%  Similarity=0.143  Sum_probs=128.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh-----CCC--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL-----YGP--VIILNETDHLTRE-AQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~-----~~~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++..     .+.  .|.+++.+.-... ....+++.+.+++++..+
T Consensus        15 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   92 (227)
T cd03260          15 ALKDISLDIPKGEI--TALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNP   92 (227)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchh
Confidence            44555666688998  9999999999999999999998     543  6778875421111 123345567777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH--HHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR--LAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      + ..+..+++..+...      ......++..+.+...++..|+  .+...+.  ..++|+|+.||     |+...+.++
T Consensus        93 ~-~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll  163 (227)
T cd03260          93 F-PGSIYDNVAYGLRL------HGIKLKEELDERVEEALRKAAL--WDEVKDRLHALGLSGGQQQRLCLARALANEPEVL  163 (227)
T ss_pred             c-cccHHHHHHhHHHh------cCCCcHHHHHHHHHHHHHHcCC--ChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            4 45555655443221      1111223345667777888787  4444444  48899999888     666668899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.++   ++++|+...+..++++++.+
T Consensus       164 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l  213 (227)
T cd03260         164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFL  213 (227)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEE
Confidence            999999999999999888888888664   77999999988888877644

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.71  E-value=1.1e-18  Score=144.56  Aligned_cols=178  Identities=14%  Similarity=0.108  Sum_probs=124.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALR-RTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+++.+.  .+......++ +.+.+++++..++..
T Consensus        20 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~   97 (221)
T TIGR02211        20 VLKGVSLSIGKGEI--VAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD   97 (221)
T ss_pred             eEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence            44556666688998  9999999999999999999987655  677887542  1222112223 457777776554444


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++.....       +...+..+..+.+...++..|+  ++...+.+..+|+|+.|+     ++...++++++|||
T Consensus        98 ~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP  168 (221)
T TIGR02211        98 FTALENVAMPLL-------IGKKSVKEAKERAYEMLEKVGL--EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEP  168 (221)
T ss_pred             CcHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            444455433221       1122333445566777888787  555667778999999988     66667899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~  211 (287)
                      ++++|......+.+.+.++.++     ++++|+...+.. +|+++
T Consensus       169 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~  212 (221)
T TIGR02211       169 TGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVL  212 (221)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEE
Confidence            9999999999998999888653     779999887754 46554

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.71  E-value=4e-19  Score=149.11  Aligned_cols=183  Identities=16%  Similarity=0.157  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-----CHHHHHHHHHHHHhccCCcEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-----TREAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-----~~~~~~~l~~~i~~~~~~~~~   93 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-     ........++.+.+++++..+
T Consensus        16 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~   93 (242)
T PRK11124         16 QALFDITLDCPQGET--LVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNL   93 (242)
T ss_pred             eeEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCccc
Confidence            455666677789999  9999999999999999999987654  7788886521     111223445567777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      +...+..+++.....      .+......+....+...++..|+  ++.....+.++|+|+.|+     |+...+.++++
T Consensus        94 ~~~~tv~e~i~~~~~------~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~~~p~llil  165 (242)
T PRK11124         94 WPHLTVQQNLIEAPC------RVLGLSKDQALARAEKLLERLRL--KPYADRFPLHLSGGQQQRVAIARALMMEPQVLLF  165 (242)
T ss_pred             cCCCcHHHHHHHHHH------HHcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            544455555432111      01223344555667778888887  455566678999999888     66667889999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |||++++|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       166 DEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l  214 (242)
T PRK11124        166 DEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYM  214 (242)
T ss_pred             cCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            9999999999888888888888653    78999999998888887654

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.70  E-value=1.6e-18  Score=145.49  Aligned_cols=183  Identities=16%  Similarity=0.186  Sum_probs=131.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+.-... ...+++.+.+++++..++...+.
T Consensus        16 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv   92 (242)
T cd03295          16 AVNNLNLEIAKGEF--LVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQD-PVELRRKIGYVIQQIGLFPHMTV   92 (242)
T ss_pred             EeeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCC-hHHhhcceEEEccCccccCCCcH
Confidence            44555666688999  9999999999999999999987654  6778875432111 22334557777777655544455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+.++..+.+.+.++..++.-.....+.+.++|+|+.|+     |+..-+.++++|||+++
T Consensus        93 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~  165 (242)
T cd03295          93 EENIALVPK-------LLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGA  165 (242)
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence            555433211       122344455566778888888731024566788999999888     66677899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +|......+.+.+.++.+.     ++++|+...+..++++++.+-
T Consensus       166 LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~  210 (242)
T cd03295         166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK  210 (242)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            9999988888889888653     779999999999888877553

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=7.6e-19  Score=149.84  Aligned_cols=180  Identities=13%  Similarity=0.053  Sum_probs=133.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +++.++..+.+|++  +.|.||||+|||||+++|++.+.+.  .|.+|+.+.-. .....+++.+.+++++.. .++..+
T Consensus        20 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~~i~~v~q~~~~~~~~~t   96 (274)
T PRK13647         20 ALKGLSLSIPEGSK--TALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA-ENEKWVRSKVGLVFQDPDDQVFSST   96 (274)
T ss_pred             eeeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCC-CCHHHHHhhEEEEecChhhhhccCc
Confidence            55666666788999  9999999999999999999987655  77888765321 112334556777777642 233334


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ....+..+..+.+...++..|+  .+...+.+.++|+|+.||     |+...|+++++|||++
T Consensus        97 v~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~  167 (274)
T PRK13647         97 VWDDVAFGPV-------NMGLDKDEVERRVEEALKAVRM--WDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA  167 (274)
T ss_pred             HHHHHHhhHH-------HcCCCHHHHHHHHHHHHHHCCC--HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            5555543222       1234555666677788888887  555667788999999888     7777889999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.+.    ++++|+.+.+.+++|+++.+
T Consensus       168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l  211 (274)
T PRK13647        168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVL  211 (274)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999999999888753    78999999999999987755

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=1.1e-18  Score=151.97  Aligned_cols=185  Identities=16%  Similarity=0.104  Sum_probs=134.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcE--EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCR--LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~--~i~   95 (287)
                      +++.++..+..|+.  +.|.||||||||||+++|++.+.+.  .|.+++.+.  ++......+++.+.+++|+..  +..
T Consensus        30 ~l~~vsl~i~~Ge~--~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p  107 (327)
T PRK11308         30 ALDGVSFTLERGKT--LAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP  107 (327)
T ss_pred             EEeeeEEEECCCCE--EEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence            45566666788999  9999999999999999999987654  677887653  223333345555777777652  222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++..+++.      ....+..+..+.+...++..|+. +.....+..++|+|+.||     |+...++++++||
T Consensus       108 ~~~v~~~l~~~~~~------~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDE  180 (327)
T PRK11308        108 RKKVGQILEEPLLI------NTSLSAAERREKALAMMAKVGLR-PEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE  180 (327)
T ss_pred             ccCHHHHHHHHHHH------ccCCCHHHHHHHHHHHHHHCCCC-hHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            22222333333321      11245566677888889888883 234466788999999988     7777789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      |++++|......+.+.+.++.++     ++++|+...+..++|+++.+..
T Consensus       181 Pts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~  230 (327)
T PRK11308        181 PVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYL  230 (327)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999999988764     7899999999999999875543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.70  E-value=2.3e-19  Score=147.64  Aligned_cols=179  Identities=17%  Similarity=0.151  Sum_probs=125.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE--EEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLI--LCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i--~~~   97 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+++.+. .     .+++.+.+++++..+.  +..
T Consensus        14 ~l~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~-~-----~~~~~i~~v~q~~~~~~~~~~   85 (213)
T cd03235          14 VLEDVSFEVKPGEF--LAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPL-E-----KERKRIGYVPQRRSIDRDFPI   85 (213)
T ss_pred             eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccH-H-----HHHhheEEeccccccccCCCC
Confidence            45666667789999  9999999999999999999987655  677887542 1     2345577777765432  112


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..+...+.   .+.....+...+.+...++..++  ++...+.+.++|+|+.|+     |+...++++++|||+
T Consensus        86 tv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt  160 (213)
T cd03235          86 SVRDVVLMGLYGHK---GLFRRLSKADKAKVDEALERVGL--SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPF  160 (213)
T ss_pred             cHHHHHHhcccccc---ccccCCCHHHHHHHHHHHHHcCC--HHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            33344332211000   00001122344566777887777  455566778999999888     677778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|+.....+.+.+.++.+.    ++++|+.+.+.+++++++.+
T Consensus       161 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  205 (213)
T cd03235         161 AGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL  205 (213)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            999999999898888888643    77999999998888876644

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.70  E-value=2e-19  Score=148.94  Aligned_cols=180  Identities=15%  Similarity=0.092  Sum_probs=123.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+..........++.+.+++++..++...+.
T Consensus        15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (222)
T cd03224          15 ILFGVSLTVPEGEI--VALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV   92 (222)
T ss_pred             EeeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence            44556666688988  9999999999999999999987654  6778875432111111223446677776554443344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE-GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      .+++.....       +..  ..+....+...++.. ++  ++...+.+.++|+|+.|+     |+..-+.++++|||++
T Consensus        93 ~~~l~~~~~-------~~~--~~~~~~~~~~~l~~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  161 (222)
T cd03224          93 EENLLLGAY-------ARR--RAKRKARLERVYELFPRL--KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE  161 (222)
T ss_pred             HHHHHHHhh-------hcC--chhHHHHHHHHHHHHHhh--hhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcc
Confidence            444433221       111  122333444455554 33  445566788899999888     5666688999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|......+.+.+.++.+.    ++++|+...+..++++++.+-
T Consensus       162 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  206 (222)
T cd03224         162 GLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLE  206 (222)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEee
Confidence            99999999999999888653    789999999999988876553

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.70  E-value=2.9e-18  Score=140.57  Aligned_cols=174  Identities=16%  Similarity=0.117  Sum_probs=124.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+.+|++  ++|.||||+|||||++++++...+.  .|.+++.+... .  ..+++.+.+++++..++...+.
T Consensus        15 ~l~~~~~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~--~~~~~~i~~~~q~~~~~~~~tv   89 (208)
T cd03268          15 VLDDISLHVKKGEI--YGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK-N--IEALRRIGALIEAPGFYPNLTA   89 (208)
T ss_pred             eEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccc-h--HHHHhhEEEecCCCccCccCcH
Confidence            44455555678888  9999999999999999999987654  67788765322 1  2334556677776655544455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       ....+    .+.+...++..++  ++...+.+.++|+|+.|+     |+...|.++++|||+++
T Consensus        90 ~e~l~~~~~-------~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  156 (208)
T cd03268          90 RENLRLLAR-------LLGIR----KKRIDEVLDVVGL--KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG  156 (208)
T ss_pred             HHHHHHHHH-------hcCCc----HHHHHHHHHHcCC--HHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence            555543322       11112    2344556666676  556667788999999888     56666889999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       157 LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l  199 (208)
T cd03268         157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGII  199 (208)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEE
Confidence            9999998888888888653    77999999988888876543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=2.8e-19  Score=152.43  Aligned_cols=182  Identities=16%  Similarity=0.103  Sum_probs=129.9

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcEE-EEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCRL-ILC   96 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~~-i~~   96 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++.+.+.  .|.+|+.+.- .......+++.+.+++++... ++.
T Consensus        15 ~il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (271)
T PRK13638         15 PVLKGLNLDFSLSPV--TGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFY   92 (271)
T ss_pred             ccccceEEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcccc
Confidence            355666666788999  9999999999999999999987655  6788876531 111123345567777776542 222


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++.....       ....+..+..+.+...++..|+  ++.....+.++|+|+.||     |+...|.++++|||
T Consensus        93 ~~~~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP  163 (271)
T PRK13638         93 TDIDSDIAFSLR-------NLGVPEAEITRRVDEALTLVDA--QHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP  163 (271)
T ss_pred             ccHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--HhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            233333332221       1123445555667777777777  444556678899999888     67777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l  209 (271)
T PRK13638        164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVL  209 (271)
T ss_pred             cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999998888889888653    67999999999989988755

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.70  E-value=2.5e-19  Score=151.66  Aligned_cols=182  Identities=14%  Similarity=0.092  Sum_probs=132.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC------------CHHHHHHHHHHHHhc
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL------------TREAQQALRRTMEKY   87 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l------------~~~~~~~l~~~i~~~   87 (287)
                      +.+.++..+.+|++  +.|.||||+|||||++++++...+.  .|.+++.+..            ....+..+++.+.++
T Consensus        20 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v   97 (257)
T PRK10619         20 VLKGVSLQANAGDV--ISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMV   97 (257)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEEE
Confidence            45566666688999  9999999999999999999987654  6778875421            111233455667777


Q ss_pred             cCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCcHHH-----HHHH
Q psy2281          88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRNLRR-----AILM  161 (287)
Q Consensus        88 ~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~~r~-----al~~  161 (287)
                      +++..++...+..+++..+..      .+......+..+.+...++..|+  ++.. .+.+.++|+|+.|+     |+..
T Consensus        98 ~q~~~l~~~~sv~enl~~~~~------~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~LS~G~~qrv~laral~~  169 (257)
T PRK10619         98 FQHFNLWSHMTVLENVMEAPI------QVLGLSKQEARERAVKYLAKVGI--DERAQGKYPVHLSGGQQQRVSIARALAM  169 (257)
T ss_pred             ecCcccCCCCcHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHHcCC--ChhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence            777655544455555533211      02223445556677788888887  4433 45678899999888     7777


Q ss_pred             HHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      -|.++++|||++++|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       170 ~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l  225 (257)
T PRK10619        170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL  225 (257)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            78999999999999999999898888888654    77999999999988987654

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.70  E-value=2.3e-15  Score=138.29  Aligned_cols=226  Identities=15%  Similarity=0.169  Sum_probs=150.9

Q ss_pred             CCCCccC---cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhCC---C---------------------
Q psy2281          12 NLQKLDF---HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELYG---P---------------------   62 (287)
Q Consensus        12 ~~~~~~~---~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~---------------------   62 (287)
                      +|++++.   +..+......+... +. .++++|+|++|+|||+|++++++.+..   .                     
T Consensus       286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~  365 (617)
T PRK14086        286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRD  365 (617)
T ss_pred             CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHh
Confidence            6777764   22344455555542 32 223999999999999999999987521   1                     


Q ss_pred             --------------EEEEeCCCCCCH--HHHHHHHHHHHhccCC-cEEEEEeCCCC----CCcHHHhcccc---eeecCC
Q psy2281          63 --------------VIILNETDHLTR--EAQQALRRTMEKYITT-CRLILCANSMS----QVIPAIRSRCL---CIRIPA  118 (287)
Q Consensus        63 --------------~i~ide~d~l~~--~~~~~l~~~i~~~~~~-~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~  118 (287)
                                    +++|||++.+..  ..+..|...++....+ ..++++++...    .+.+.|+||+.   ++.+..
T Consensus       366 ~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~  445 (617)
T PRK14086        366 GKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQP  445 (617)
T ss_pred             ccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCC
Confidence                          799999998753  3466777777776553 45666666542    47788999984   689999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhc-
Q psy2281         119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE-  197 (287)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~-  197 (287)
                      |+.+...+++.+.++..++.++++++++|++...+++|.+...+.++..+..-..  ..+.    ...++++.+.++.. 
T Consensus       446 PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~--~~it----l~la~~vL~~~~~~~  519 (617)
T PRK14086        446 PELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNR--QPVD----LGLTEIVLRDLIPED  519 (617)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhC--CCCC----HHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999999999996666665543221100  1122    22333444443321 


Q ss_pred             ----cChhHHHHHHHHHHHHHhcCCCHHHH-----------HHHHHHHHHHhCChHHHHHHHHHHH
Q psy2281         198 ----QSPKKLLEVRTRLYELLVHSIPVNVL-----------FKYLLEGLLANCDSDLKSKSIEMAA  248 (287)
Q Consensus       198 ----~~~~~~~~~~~~~~~l~~~~~~~~~i-----------~~~~~~~~~~~~~~~~~~~~~~~~~  248 (287)
                          -+.+.+.+.....|     |++.+++           ..++.+|+++++...+..++...++
T Consensus       520 ~~~~it~d~I~~~Va~~f-----~v~~~dl~s~~R~~~i~~aRqiAMYL~r~lt~~Sl~~IG~~Fg  580 (617)
T PRK14086        520 SAPEITAAAIMAATADYF-----GLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFG  580 (617)
T ss_pred             cCCcCCHHHHHHHHHHHh-----CCCHHHHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence                12333333333333     3333333           4599999999877777777777776

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=1.2e-18  Score=149.47  Aligned_cols=184  Identities=16%  Similarity=0.125  Sum_probs=136.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcE-EEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE-AQQALRRTMEKYITTCR-LILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~-~i~~~   97 (287)
                      +++.++..+.+|++  +.|.||||+|||||+++|++.+.+.  .|.+|+.+.-... ....+++.+.+++|++. .++..
T Consensus        22 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~   99 (287)
T PRK13637         22 ALDNVNIEIEDGEF--VGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE   99 (287)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence            45566666788999  9999999999999999999988755  7888886532211 12234566788887753 22233


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++.....       ....+.++..+.+...++..|+...+.....+.++|+|+.||     |+...|.++++|||+
T Consensus       100 tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt  172 (287)
T PRK13637        100 TIEKDIAFGPI-------NLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPT  172 (287)
T ss_pred             cHHHHHHhHHH-------HCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            45555543322       123456677777888888888842134456678999999888     777788999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++|+.....+.+.+.++.++     ++++|+...+..++|+++.+-
T Consensus       173 ~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~  219 (287)
T PRK13637        173 AGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMN  219 (287)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999999999999998754     779999999999999887553

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.70  E-value=2e-16  Score=128.25  Aligned_cols=146  Identities=26%  Similarity=0.340  Sum_probs=110.7

Q ss_pred             cCCCCCCCccCcHHHHHHHHHHH---hc----CC--CCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281           8 YRPNNLQKLDFHCKQANHLRNLL---KE----GD--FPHLLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~~~---~~----g~--~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      .+--+|++++||++++...+.+.   ++    |.  ..+++|+||||+|||.++++++++...+                
T Consensus       115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd  194 (368)
T COG1223         115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD  194 (368)
T ss_pred             hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence            34457899999998877655554   22    22  2349999999999999999999887644                


Q ss_pred             ------------------EEEEeCCCCCCHH------------HHHHHHHHHHhccCC--cEEEEEeCCCCCCcHHHhcc
Q psy2281          63 ------------------VIILNETDHLTRE------------AQQALRRTMEKYITT--CRLILCANSMSQVIPAIRSR  110 (287)
Q Consensus        63 ------------------~i~ide~d~l~~~------------~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~~l~sr  110 (287)
                                        ++||||.|.+.-+            ..++|+.-|+-..++  .+.|..+|.++-+.++++||
T Consensus       195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsR  274 (368)
T COG1223         195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSR  274 (368)
T ss_pred             HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhh
Confidence                              9999999975421            245677666665544  34555666777899999999


Q ss_pred             cc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281         111 CL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN  154 (287)
Q Consensus       111 ~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~  154 (287)
                      +. -++|..|++++...+++..+++.-+.++.. .++++..++|.
T Consensus       275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~  318 (368)
T COG1223         275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGM  318 (368)
T ss_pred             hhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCC
Confidence            95 699999999999999999999988876544 67777666553

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.70  E-value=3.1e-18  Score=145.77  Aligned_cols=182  Identities=17%  Similarity=0.188  Sum_probs=129.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.  ........+++.+.+++++..++...
T Consensus        22 il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~   99 (269)
T PRK11831         22 IFDNISLTVPRGKI--TAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM   99 (269)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence            34555566688988  9999999999999999999987654  677787542  22222223445567777776554433


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..++..      +...+..+....+...++..++  .+.....+.++|+|+.|+     |+...+.++++|||+
T Consensus       100 tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt  171 (269)
T PRK11831        100 NVFDNVAYPLRE------HTQLPAPLLHSTVMMKLEAVGL--RGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF  171 (269)
T ss_pred             CHHHHHHHHHHH------ccCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            444555433221      1122344445556677777777  555666788999999888     566668899999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       172 ~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l  217 (269)
T PRK11831        172 VGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIV  217 (269)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEE
Confidence            999999999999999988653     78999999999999987654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.70  E-value=1.1e-18  Score=149.39  Aligned_cols=186  Identities=19%  Similarity=0.199  Sum_probs=147.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCC--CCCHHHHHHHHHHHHhccCCcE--EEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETD--HLTREAQQALRRTMEKYITTCR--LIL   95 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d--~l~~~~~~~l~~~i~~~~~~~~--~i~   95 (287)
                      .+++.++..++.|+.  +.++|.+||||||+.+++.+.+... .|.+++-+  .++......+++.|.-++|++.  +-+
T Consensus       301 ~AVd~isl~L~~gqT--lGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP  378 (534)
T COG4172         301 RAVDGISLTLRRGQT--LGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP  378 (534)
T ss_pred             EEeccceeEecCCCe--EEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence            345566666788988  9999999999999999999998765 67777644  4556666677888888777652  333


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      -.++.+-+.++++     +.=+.++..+..+++...++..|+. ++...++..+.|||+.+|     |+...|+++++||
T Consensus       379 RmtV~qII~EGL~-----vh~~~ls~~eR~~rv~~aL~EVGLD-p~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDE  452 (534)
T COG4172         379 RMTVGQIIEEGLR-----VHEPKLSAAERDQRVIEALEEVGLD-PATRNRYPHEFSGGQRQRIAIARALILKPELILLDE  452 (534)
T ss_pred             ccCHHHHhhhhhh-----hcCCCCCHHHHHHHHHHHHHHcCCC-hhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecC
Confidence            3333344555554     2234578899999999999999995 445678899999999888     8888899999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      |+|++|......+.++++++.++     ++++||...+..+|+.+..+-
T Consensus       453 PTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~  501 (534)
T COG4172         453 PTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMR  501 (534)
T ss_pred             CchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEe
Confidence            99999999999999999999877     899999999999999887553

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=3.4e-19  Score=150.43  Aligned_cols=175  Identities=16%  Similarity=0.141  Sum_probs=124.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-..      ...+.+++++..++...+.
T Consensus        16 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~------~~~~~~v~q~~~~~~~~tv   87 (255)
T PRK11248         16 ALEDINLTLESGEL--LVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP------GAERGVVFQNEGLLPWRNV   87 (255)
T ss_pred             eEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC------CCcEEEEeCCCccCCCCcH
Confidence            45556666688999  9999999999999999999987654  677787553111      0124555555443332333


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..+..       +......+....+...++..|+  ++...+.+.++|+|+.||     |+...|.++++|||+++
T Consensus        88 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~  158 (255)
T PRK11248         88 QDNVAFGLQ-------LAGVEKMQRLEIAHQMLKKVGL--EGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGA  158 (255)
T ss_pred             HHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            344332221       1123344555667778888887  455566788999999988     66666889999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.     ++++|+.+.+..++++++.+
T Consensus       159 LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l  202 (255)
T PRK11248        159 LDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLL  202 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999999999888542     77999999999999987655

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.69  E-value=7.6e-15  Score=127.30  Aligned_cols=225  Identities=18%  Similarity=0.179  Sum_probs=144.8

Q ss_pred             cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------------------------------C-----
Q psy2281          32 EGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------------------------------P-----   62 (287)
Q Consensus        32 ~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------------------------------~-----   62 (287)
                      .|+.|| ++|+||+|+||||+++.+++.+.+                                           .     
T Consensus        17 ~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id   96 (325)
T PRK08699         17 WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKID   96 (325)
T ss_pred             cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHH
Confidence            578999 999999999999999999988631                                           0     


Q ss_pred             -------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHH
Q psy2281          63 -------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE  123 (287)
Q Consensus        63 -------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~  123 (287)
                                         ++++|+++.++..+++.+++.++.++.++.|+++++..+.+.++++|||+.+.|++++.++
T Consensus        97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~  176 (325)
T PRK08699         97 AVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEE  176 (325)
T ss_pred             HHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHH
Confidence                               8888999999999999999999999888889999888899999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHH-----HHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhc-
Q psy2281         124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAIL-----MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE-  197 (287)
Q Consensus       124 ~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~-----~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~-  197 (287)
                      ...++.+    .|+.  ... ..+ .+++|....+..     .-+.++  +. +.   ......+..    +.+.+... 
T Consensus       177 ~~~~L~~----~~~~--~~~-~~l-~~~~g~p~~~~~~~~~~~r~~~~--~~-l~---~~~~~~~l~----~~~~~~~~k  238 (325)
T PRK08699        177 ALAYLRE----RGVA--EPE-ERL-AFHSGAPLFDEEPELRALRIKLL--DI-LA---EPRLLKILD----YAALFDKEK  238 (325)
T ss_pred             HHHHHHh----cCCC--cHH-HHH-HHhCCChhhhcCchHHHHHHHHH--HH-HH---ccChhhHHH----HHHHHHhcc
Confidence            9988865    2442  221 122 355664422110     000000  00 00   000111111    11211111 


Q ss_pred             cChh-HHHHHHHHHHHHHh--cCCCHHHHH---HHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHH
Q psy2281         198 QSPK-KLLEVRTRLYELLV--HSIPVNVLF---KYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASF  271 (287)
Q Consensus       198 ~~~~-~~~~~~~~~~~l~~--~~~~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~  271 (287)
                      .+.. .+.-+...+.+++.  .+... .+.   .+....+.++++...+...++.+.+....+..+.+..+.+|.++.++
T Consensus       239 ~~~~~~l~~l~~~~rDll~~~~~~~~-~~~~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l~~n~n~~L~le~lll~~  317 (325)
T PRK08699        239 LPLAVFVGWMQKWLVDLGLCLQHMKP-VYYPAYEDRLLQTASGFRPRNVFAAEDMLKQLAPYGFHTLNVKMQIEHLLINY  317 (325)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcCCCc-ccCHhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            0111 12223333334432  22111 111   12223344567777788888888888888889999999999999887


Q ss_pred             HHHH
Q psy2281         272 MAMY  275 (287)
Q Consensus       272 ~~~~  275 (287)
                      ...+
T Consensus       318 ~~~~  321 (325)
T PRK08699        318 LELK  321 (325)
T ss_pred             HHHh
Confidence            6553

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.69  E-value=7.7e-19  Score=157.84  Aligned_cols=197  Identities=18%  Similarity=0.181  Sum_probs=140.9

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------EEEEeCCCCC--CHHHHHHHH-HHHHhccCCc
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------VIILNETDHL--TREAQQALR-RTMEKYITTC   91 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------~i~ide~d~l--~~~~~~~l~-~~i~~~~~~~   91 (287)
                      .+++.++..+..|+.  +.|.|.|||||||+++++.+.+...      -|++++.|.+  +......++ +.+.+++|++
T Consensus        23 ~~v~~vsf~v~~GE~--lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p  100 (539)
T COG1123          23 PAVRDVSFEVEPGEI--LGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP  100 (539)
T ss_pred             eeeecceEEecCCcE--EEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCc
Confidence            356677777799999  9999999999999999999988644      6777876543  333332232 2345555543


Q ss_pred             E--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          92 R--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        92 ~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      .  +-+..+..+.+.+.++-+      ...+.++..+.+.+.++..|+.-+....++..++|||+.||     |+...|+
T Consensus       101 ~~slnP~~tIg~Qi~E~~~~h------~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~  174 (539)
T COG1123         101 MTSLNPVMTIGDQIREALRLH------GKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPK  174 (539)
T ss_pred             hhhcCchhhHHHHHHHHHHHh------ccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCC
Confidence            1  111112222244444321      12347889999999999999952222234999999999998     6667789


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      ++++||||+++|.....++.+.++++.++     ++++|+...+..++|++..|..+.+    ++++|++
T Consensus       175 LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~  244 (539)
T COG1123         175 LLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS  244 (539)
T ss_pred             EEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHh
Confidence            99999999999999999999999999877     8899999999999999886543322    4455544

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.69  E-value=3.8e-19  Score=145.51  Aligned_cols=172  Identities=16%  Similarity=0.109  Sum_probs=121.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE-EEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRL-ILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~-i~~~~   98 (287)
                      +.+.++..+++|+.  +.|.||||+|||||++++++...+.  .|.+++.+. ..   ...++.+.+++++..+ ++..+
T Consensus        15 ~l~~v~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~-~~---~~~~~~i~~~~q~~~~~~~~~t   88 (205)
T cd03226          15 ILDDLSLDLYAGEI--IALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI-KA---KERRKSIGYVMQDVDYQLFTDS   88 (205)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEh-hh---HHhhcceEEEecChhhhhhhcc
Confidence            45555666688998  9999999999999999999987655  677887652 21   2234456666666432 22233


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       .....    ...+.+.++..++  ++...+.+.++|+|+.||     |+...|.++++|||++
T Consensus        89 v~e~l~~~~~-------~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  155 (205)
T cd03226          89 VREELLLGLK-------ELDAG----NEQAETVLKDLDL--YALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTS  155 (205)
T ss_pred             HHHHHhhhhh-------hcCcc----HHHHHHHHHHcCC--chhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCc
Confidence            4444432211       11111    1345667777777  455566778899999888     6666789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++|+.....+.+.+.++.+.    ++++|+...+..++|+++.
T Consensus       156 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~  198 (205)
T cd03226         156 GLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLL  198 (205)
T ss_pred             cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            99999998888888888644    7799999998888876653

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.69  E-value=6.5e-19  Score=148.24  Aligned_cols=183  Identities=14%  Similarity=0.137  Sum_probs=132.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC------C-EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------P-VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------~-~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+      . .|.+|+.+.-.. ......++.+.+++++..+
T Consensus        16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   93 (247)
T TIGR00972        16 ALKNINLDIPKNQV--TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP   93 (247)
T ss_pred             eecceeEEECCCCE--EEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence            45666667789999  999999999999999999998743      1 677887653211 1123445667888877655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +. .+..+++..+..       ... .+..+..+.+...++..|+.  +.+...+.+.++|+|+.|+     |+...|++
T Consensus        94 ~~-~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l  165 (247)
T TIGR00972        94 FP-MSIYDNIAYGPR-------LHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEV  165 (247)
T ss_pred             CC-CCHHHHHHhHHH-------hcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            44 455555543322       111 23455566777888888873  0144556678899999888     66677899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++|+++.+-
T Consensus       166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~  217 (247)
T TIGR00972       166 LLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFY  217 (247)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEE
Confidence            9999999999999988888888888654   779999999999999877553

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.6e-18  Score=148.12  Aligned_cols=179  Identities=12%  Similarity=0.090  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +++.++..+.+|++  ++|.||||+|||||+++|++.+.+.  .|.+|+.+.-.. ....+++.+.++++++. +++..+
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~-~~~~~~~~i~~~~q~~~~~~~~~t   98 (279)
T PRK13635         22 ALKDVSFSVYEGEW--VAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE-TVWDVRRQVGMVFQNPDNQFVGAT   98 (279)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC-cHHHHhhheEEEEeCHHHhccccc
Confidence            55666667789999  9999999999999999999998755  778888653222 12234566788887752 444445


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ....+.++..+.+...++..|+  ++.....+..+|+|+.|+     |+..-|+++++|||++
T Consensus        99 v~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~  169 (279)
T PRK13635         99 VQDDVAFGLE-------NIGVPREEMVERVDQALRQVGM--EDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATS  169 (279)
T ss_pred             HHHHHhhhHh-------hCCCCHHHHHHHHHHHHHHcCC--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            5555543322       1123455666777888888887  566667788999999888     7777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.+.     ++++|+.+.+.. +++++.+
T Consensus       170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l  213 (279)
T PRK13635        170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVM  213 (279)
T ss_pred             cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence            99999999999999988763     779999988864 7877644

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.69  E-value=2.5e-19  Score=165.89  Aligned_cols=189  Identities=11%  Similarity=0.049  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-........++.+.+++++..++...+
T Consensus        19 ~il~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~t   96 (510)
T PRK09700         19 HALKSVNLTVYPGEI--HALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELT   96 (510)
T ss_pred             EEeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCCCc
Confidence            356667777789999  9999999999999999999988654  677787542111111112234666666654443334


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++..+.........+...+.++....+...++..|+  .+...+.+.++|+|+.||     |+...+.++++|||++
T Consensus        97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~  174 (510)
T PRK09700         97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL--KVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTS  174 (510)
T ss_pred             HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCC--CCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence            444443221100000011112334556677788888887  445567788999999998     6777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.+.    |+++|+...+..++++++.+
T Consensus       175 ~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l  218 (510)
T PRK09700        175 SLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVM  218 (510)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999999999988754    78999999999999987754

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.69  E-value=5.6e-19  Score=147.53  Aligned_cols=179  Identities=13%  Similarity=0.131  Sum_probs=121.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc-CCcEEEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI-TTCRLILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~-~~~~~i~~~~   98 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+... . ...+++.+.+.+ +...++...+
T Consensus        36 il~~vs~~i~~Ge~--~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~-~-~~~~~~~i~~~~~~~~~~~~~~t  111 (236)
T cd03267          36 ALKGISFTIEKGEI--VGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWK-R-RKKFLRRIGVVFGQKTQLWWDLP  111 (236)
T ss_pred             eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccc-c-chhhcccEEEEcCCccccCCCCc
Confidence            34455555578888  9999999999999999999987655  67777654211 1 112333444443 2233332223


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       +.....++..+.+...++..++  ++.....+..+|+|+.|+     |+...|.++++|||++
T Consensus       112 v~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  182 (236)
T cd03267         112 VIDSFYLLAA-------IYDLPPARFKKRLDELSELLDL--EELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTI  182 (236)
T ss_pred             HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence            3333322111       2233445555566677777776  555566788999999888     6666789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       183 ~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  227 (236)
T cd03267         183 GLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI  227 (236)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            99999999999999988653     77999999888888876544

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=3.1e-18  Score=146.97  Aligned_cols=182  Identities=10%  Similarity=0.111  Sum_probs=135.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC---HHHHHHHHHHHHhccCCcE-EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT---REAQQALRRTMEKYITTCR-LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~---~~~~~~l~~~i~~~~~~~~-~i~   95 (287)
                      +++.++..+++|++  +.|.||||+|||||+++|++...+.  .|.+|+.+...   ......+++.+.+++|++. .++
T Consensus        22 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   99 (286)
T PRK13646         22 AIHDVNTEFEQGKY--YAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF   99 (286)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence            55666666788999  9999999999999999999988755  78888865321   1122345677888888752 222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++..+..       ....+.++..+.+...++..|+. .+.....+.++|+|+.|+     |+...|+++++||
T Consensus       100 ~~tv~e~i~~~~~-------~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDE  171 (286)
T PRK13646        100 EDTVEREIIFGPK-------NFKMNLDEVKNYAHRLLMDLGFS-RDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE  171 (286)
T ss_pred             hhhHHHHHHhhHH-------HcCCCHHHHHHHHHHHHHHcCCC-hhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            2345555543322       11345566667778888888872 134456788999999988     7778889999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|+.....+.+.+.++.+.     ++++|+.+.+..++++++.+
T Consensus       172 Pt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l  219 (286)
T PRK13646        172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVM  219 (286)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            99999999999999999998653     78999999999999988755

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.9e-18  Score=150.01  Aligned_cols=183  Identities=14%  Similarity=0.092  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH---------------HHHHHHHHHH
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR---------------EAQQALRRTM   84 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~---------------~~~~~l~~~i   84 (287)
                      +.+.++..+.+|++  ++|.||||||||||+++|++.+.+.  .|.+|+.+.-..               .....+++.+
T Consensus        41 ~L~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  118 (320)
T PRK13631         41 ALNNISYTFEKNKI--YFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV  118 (320)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence            55566666688999  9999999999999999999988655  778887542111               1234456677


Q ss_pred             HhccCCcE-EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----H
Q psy2281          85 EKYITTCR-LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----A  158 (287)
Q Consensus        85 ~~~~~~~~-~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----a  158 (287)
                      .+++|++. .++..+..+++..+..       ....+.++..+++...++..|+. .....+...++|+|+.||     |
T Consensus       119 g~v~Q~~~~~l~~~tv~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGqkqRvaiAra  190 (320)
T PRK13631        119 SMVFQFPEYQLFKDTIEKDIMFGPV-------ALGVKKSEAKKLAKFYLNKMGLD-DSYLERSPFGLSGGQKRRVAIAGI  190 (320)
T ss_pred             EEEEECchhccccchHHHHHHhhHH-------hcCCCHHHHHHHHHHHHHHcCCC-hhHhcCCcccCCHHHHHHHHHHHH
Confidence            77777652 2223345555533321       11235566667778888888872 134556678899999988     7


Q ss_pred             HHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281         159 ILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       159 l~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +...+.++++|||++++|......+.+.+.++.+.    ++++|+.+.+...+|+++.+-
T Consensus       191 L~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~  250 (320)
T PRK13631        191 LAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD  250 (320)
T ss_pred             HHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            77778999999999999999998888888887653    789999999988899887553

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.69  E-value=3.6e-18  Score=142.07  Aligned_cols=179  Identities=16%  Similarity=0.101  Sum_probs=125.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHH-HHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALR-RTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~-~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-  +.......+ +.+.+++++..++..
T Consensus        25 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~  102 (228)
T PRK10584         25 ILTGVELVVKRGET--IALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPT  102 (228)
T ss_pred             EEeccEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCC
Confidence            45556666688998  9999999999999999999987655  6778875432  222111222 346666766554443


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++.....       +...+..+..+.+...++..++  .+.....+.++|+|+.|+     |+...++++++|||
T Consensus       103 ~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEP  173 (228)
T PRK10584        103 LNALENVELPAL-------LRGESSRQSRNGAKALLEQLGL--GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEP  173 (228)
T ss_pred             cCHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--HhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            344444433221       2223344556677788888887  455566788999999888     67777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++++|......+.+.+.++.++     ++++|+...+.. +++++.
T Consensus       174 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~  218 (228)
T PRK10584        174 TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLR  218 (228)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEE
Confidence            9999999998888889888653     679999887644 665543

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=2e-18  Score=148.23  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC---HHHHHHHHHHHHhccCCcE-EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT---REAQQALRRTMEKYITTCR-LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~---~~~~~~l~~~i~~~~~~~~-~i~   95 (287)
                      +++.++..+.+|++  +.|.||||+|||||+++|++.+.+.  .|.+|+.+...   .......++.+.++++++. .++
T Consensus        22 ~l~~vsl~i~~Ge~--~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~   99 (287)
T PRK13641         22 GLDNISFELEEGSF--VALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF   99 (287)
T ss_pred             ceeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence            55666667789999  9999999999999999999988765  78888865321   1112334455777777642 222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      ..+..+++..+..       ......++..+.+...++..|+  + +...+.+.++|+|+.||     |+...|.++++|
T Consensus       100 ~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLD  170 (287)
T PRK13641        100 ENTVLKDVEFGPK-------NFGFSEDEAKEKALKWLKKVGL--SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLD  170 (287)
T ss_pred             cchHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--ChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            3345555533221       1223455666677788888787  4 34566788999999888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.    ++++|+.+.+..++|+++.+
T Consensus       171 EPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l  218 (287)
T PRK13641        171 EPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVL  218 (287)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999988888889888653    78999999999999988755

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.68  E-value=3.2e-18  Score=142.40  Aligned_cols=170  Identities=15%  Similarity=0.160  Sum_probs=121.7

Q ss_pred             HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHH
Q psy2281          29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA  106 (287)
Q Consensus        29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~  106 (287)
                      .+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+.-....      ...+++++..++...+..+++..+
T Consensus         7 ~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~------~~~~v~q~~~l~~~~tv~e~l~~~   78 (230)
T TIGR01184         7 TIQQGEF--ISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP------DRMVVFQNYSLLPWLTVRENIALA   78 (230)
T ss_pred             EEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh------hheEEecCcccCCCCCHHHHHHHH
Confidence            3467888  9999999999999999999988654  67788754211111      013455555444334444554333


Q ss_pred             HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCc
Q psy2281         107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEP  181 (287)
Q Consensus       107 l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~  181 (287)
                      ....     +...+..+..+.+...++..++  ++...+.+.++|+|+.||     |+...++++++|||++++|.....
T Consensus        79 ~~~~-----~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~  151 (230)
T TIGR01184        79 VDRV-----LPDLSKSERRAIVEEHIALVGL--TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG  151 (230)
T ss_pred             HHhc-----ccCCCHHHHHHHHHHHHHHcCC--HHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence            2110     1223445555667778888787  555566788999999988     666778999999999999999999


Q ss_pred             cHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         182 DWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       182 ~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .+.+.+.++.++     ++++|+...+..++|+++.+
T Consensus       152 ~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l  188 (230)
T TIGR01184       152 NLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVML  188 (230)
T ss_pred             HHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            999989888653     78999999999999987654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.68  E-value=1.8e-18  Score=142.29  Aligned_cols=148  Identities=18%  Similarity=0.147  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+++|+.  +.++|+|||||||+.+++.+...+.  .|++++.|...-.                       
T Consensus        27 ~avd~Vsf~i~~ge~--~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-----------------------   81 (268)
T COG4608          27 KAVDGVSFSIKEGET--LGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-----------------------   81 (268)
T ss_pred             EEecceeEEEcCCCE--EEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-----------------------
Confidence            345666677789999  9999999999999999999998866  7888876621100                       


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                                            .++..+.+.+.++..|+. ++...++..++|||+.||     |+...|+++..|||++
T Consensus        82 ----------------------~~~~~~~v~elL~~Vgl~-~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS  138 (268)
T COG4608          82 ----------------------KEERRERVLELLEKVGLP-EEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS  138 (268)
T ss_pred             ----------------------hhHHHHHHHHHHHHhCCC-HHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence                                  456777888888988964 456778899999999998     8889999999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhc
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVH  216 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~  216 (287)
                      ++|...+..+.+++.++.+.     ++.+|+...+..++|++..+..+
T Consensus       139 aLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G  186 (268)
T COG4608         139 ALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLG  186 (268)
T ss_pred             hcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecC
Confidence            99999999999999999877     88999999999999998765443

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.6e-18  Score=151.10  Aligned_cols=186  Identities=13%  Similarity=0.161  Sum_probs=132.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P--VIILNETDH--LTREAQQALR-RTMEKYITTCR   92 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~   92 (287)
                      +++.++..+.+|++  +.|.||||||||||+++|++.+.+    .  .|.+|+.+.  ++......++ +.+.+++|+..
T Consensus        22 ~l~~vsl~i~~Ge~--~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~   99 (326)
T PRK11022         22 AVDRISYSVKQGEV--VGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM   99 (326)
T ss_pred             EEeeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence            56667777789999  999999999999999999998753    1  678888664  2332222222 23666666642


Q ss_pred             --EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          93 --LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        93 --~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                        +....+..+.+...++.      ......++..+.+.+.++..|+.-. .....+..++|+|+.||     |+...|+
T Consensus       100 ~~l~p~~~v~~~i~~~l~~------~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~  173 (326)
T PRK11022        100 TSLNPCYTVGFQIMEAIKV------HQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPK  173 (326)
T ss_pred             hhcCCcCCHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCC
Confidence              22222222233333321      1123556667778888888888421 23456788999999988     7777889


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      ++++|||++++|......+.+.+.++.++     ++++|+...+..++|+++.|..
T Consensus       174 llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~  229 (326)
T PRK11022        174 LLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA  229 (326)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            99999999999999999999999998764     7899999999999999875543

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.68  E-value=1.8e-15  Score=125.56  Aligned_cols=158  Identities=21%  Similarity=0.350  Sum_probs=120.5

Q ss_pred             CCCCCCCccC--cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------------
Q psy2281           9 RPNNLQKLDF--HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------------------------   61 (287)
Q Consensus         9 ~p~~~~~~~~--~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------------------------   61 (287)
                      .+.+|++++.  +......++.++.....++++|+||+||||||+++++++....                         
T Consensus        10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   89 (226)
T TIGR03420        10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLE   89 (226)
T ss_pred             CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcc
Confidence            3456777763  5567888888876555555999999999999999999876531                         


Q ss_pred             --CEEEEeCCCCCCHHH--HHHHHHHHHhcc-CCcEEEEEeCCCC-C--Cc-HHHhccc---ceeecCCCCHHHHHHHHH
Q psy2281          62 --PVIILNETDHLTREA--QQALRRTMEKYI-TTCRLILCANSMS-Q--VI-PAIRSRC---LCIRIPAPTHEEIVSVLT  129 (287)
Q Consensus        62 --~~i~ide~d~l~~~~--~~~l~~~i~~~~-~~~~~i~~~~~~~-~--l~-~~l~sr~---~~~~~~~~~~~~~~~~l~  129 (287)
                        .+++|||++.+....  +..+...++... ....++++++... .  +. +.+.+|+   ..+.+++++.++....+.
T Consensus        90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~  169 (226)
T TIGR03420        90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQ  169 (226)
T ss_pred             cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHH
Confidence              189999999887533  666766665532 2345666665432 1  22 6788887   368899999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         130 NICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      ..+.+.++.+++++++.+++.++|+.|.+...++.+-
T Consensus       170 ~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~  206 (226)
T TIGR03420       170 SRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALD  206 (226)
T ss_pred             HHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            9888889999999999999999999999888776644

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=3.6e-18  Score=146.65  Aligned_cols=194  Identities=12%  Similarity=0.101  Sum_probs=139.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC---HHHHHHHHHHHHhccCCcE-EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT---REAQQALRRTMEKYITTCR-LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~---~~~~~~l~~~i~~~~~~~~-~i~   95 (287)
                      +++.++..+.+|++  ++|.||||+|||||+++|++.+.+.  .|.+|+.+.-.   ......+++.+.+++|++. .++
T Consensus        21 ~l~~vsl~i~~Ge~--v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   98 (288)
T PRK13643         21 ALFDIDLEVKKGSY--TALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLF   98 (288)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhcc
Confidence            55566666789999  9999999999999999999988765  78889876321   1123345667888887752 222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++..+..       ....+.++....+.+.++..++. +....+.+..+|+|+.||     ++...|+++++||
T Consensus        99 ~~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDE  170 (288)
T PRK13643         99 EETVLKDVAFGPQ-------NFGIPKEKAEKIAAEKLEMVGLA-DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE  170 (288)
T ss_pred             cchHHHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCCC-hhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            2355555543322       11345566777788888888872 123456678899999888     7777789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      |++++|+.....+.+.+.++.+.    ++++|+.+.+..++++++.+-.+.+    +++++..
T Consensus       171 Pt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~  233 (288)
T PRK13643        171 PTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ  233 (288)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence            99999999988888888888654    7899999999999998875533222    4555543

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.68  E-value=5.4e-18  Score=140.59  Aligned_cols=180  Identities=16%  Similarity=0.132  Sum_probs=124.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC----CC--CCHHHHHHH-HHHHHhccCCcE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET----DH--LTREAQQAL-RRTMEKYITTCR   92 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~----d~--l~~~~~~~l-~~~i~~~~~~~~   92 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++.+.+.  .|.+++.    +.  .+......+ .+.+.+++++..
T Consensus        23 il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~  100 (224)
T TIGR02324        23 VLKNVSLTVNAGEC--VALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR  100 (224)
T ss_pred             EEecceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence            45566666788999  9999999999999999999987654  6677631    21  111111122 234667777665


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      ++...+..+++...+.       ......+...+.+...++..++  ++.. ...+.++|+|+.|+     |+...+.++
T Consensus       101 ~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  171 (224)
T TIGR02324       101 VIPRVSALEVVAEPLL-------ERGVPREAARARARELLARLNI--PERLWHLPPATFSGGEQQRVNIARGFIADYPIL  171 (224)
T ss_pred             cCCCccHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            4444444444443332       1123334455566777777777  4432 45678899999888     666668899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++|||++++|......+.+.+.++.+.    ++++|+...+..++|+++.
T Consensus       172 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~  221 (224)
T TIGR02324       172 LLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMD  221 (224)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEe
Confidence            999999999999988888888888654    7799998888888887653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=3.4e-18  Score=146.98  Aligned_cols=183  Identities=13%  Similarity=0.081  Sum_probs=135.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC---HHHHHHHHHHHHhccCCcE-EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT---REAQQALRRTMEKYITTCR-LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~---~~~~~~l~~~i~~~~~~~~-~i~   95 (287)
                      +++.++..+++|+.  +.|.||||+|||||+++|++...+.  .|.+|+.+.-.   ......+++.+.+++|++. .++
T Consensus        22 ~L~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~   99 (290)
T PRK13634         22 ALYDVNVSIPSGSY--VAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF   99 (290)
T ss_pred             ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence            45566666789999  9999999999999999999988765  77888765321   1223345566888887652 222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++..+..       ....+.++..+.+..+++..++. .....+.+..+|+|+.|+     |+...|+++++||
T Consensus       100 ~~tv~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE  171 (290)
T PRK13634        100 EETVEKDICFGPM-------NFGVSEEDAKQKAREMIELVGLP-EELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE  171 (290)
T ss_pred             hhhHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCCC-hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            3355555543322       11345566667788888888872 133456688999999888     7777889999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      |++++|+.....+.+.+.++.++     ++++|+...+...+|+++.+.
T Consensus       172 Pt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~  220 (290)
T PRK13634        172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMH  220 (290)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999999999999888653     789999999999999887553

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.68  E-value=2.5e-18  Score=150.94  Aligned_cols=192  Identities=15%  Similarity=0.168  Sum_probs=158.9

Q ss_pred             CCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc
Q psy2281          14 QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC   91 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~   91 (287)
                      .+.++...+.+.++..++.|++  -.|.|.||+|||||+++|.+.+.|+  .|++|+...-.....++.+..|+.+.|+.
T Consensus        11 tK~f~~~~And~V~l~v~~GeI--HaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF   88 (501)
T COG3845          11 TKRFPGVVANDDVSLSVKKGEI--HALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHF   88 (501)
T ss_pred             EEEcCCEEecCceeeeecCCcE--EEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecc
Confidence            3344444455677778899999  9999999999999999999999888  89999865444445677788899999999


Q ss_pred             EEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          92 RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        92 ~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      .++...|+.+|+..+.-+.    .....+....++.+..++++.|+.++++  .++.++|-|..||     ++..-++++
T Consensus        89 ~Lv~~lTV~ENiiLg~e~~----~~~~~~~~~~~~~i~~l~~~yGl~vdp~--~~V~dLsVG~qQRVEIlKaLyr~a~iL  162 (501)
T COG3845          89 MLVPTLTVAENIILGLEPS----KGGLIDRRQARARIKELSERYGLPVDPD--AKVADLSVGEQQRVEILKALYRGARLL  162 (501)
T ss_pred             ccccccchhhhhhhcCccc----cccccCHHHHHHHHHHHHHHhCCCCCcc--ceeecCCcchhHHHHHHHHHhcCCCEE
Confidence            9999999999987765432    1335678899999999999999987654  5688999998888     777778899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++||||+.+.+...+.+...++.+.++    ++++|..+++.+++|++-.|
T Consensus       163 ILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVL  213 (501)
T COG3845         163 ILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVL  213 (501)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEE
Confidence            999999999998888888888888877    88999999999999987643

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.68  E-value=3.5e-19  Score=150.73  Aligned_cols=180  Identities=17%  Similarity=0.078  Sum_probs=124.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+++|++  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++..+.+..+.
T Consensus        17 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv   93 (258)
T PRK13548         17 LLDDVSLTLRPGEV--VAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL-ADWSPAELARRRAVLPQHSSLSFPFTV   93 (258)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc-ccCCHHHhhhheEEEccCCcCCCCCCH
Confidence            45566666788999  9999999999999999999987654  677777542 111112234456666666544333333


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHH------HHHHhhc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILM------CEASKVQ  168 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~------l~~~~~~  168 (287)
                      .+++.....       ....+.++....+...++..++  .+.....+.++|+|+.||     |+..      .+.++++
T Consensus        94 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllL  164 (258)
T PRK13548         94 EEVVAMGRA-------PHGLSRAEDDALVAAALAQVDL--AHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL  164 (258)
T ss_pred             HHHHHhhhc-------ccCCCcHHHHHHHHHHHHHcCC--HhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEE
Confidence            333322211       0111223334556777777777  455566788999999888     3432      4689999


Q ss_pred             CCCcccccCccCccHHHHHHHHH-HH----HHhccChhHHHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTA-KL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~-~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |||++++|......+.+.+.++. +.    ++++|+...+..++++++.+
T Consensus       165 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  214 (258)
T PRK13548        165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLL  214 (258)
T ss_pred             eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEE
Confidence            99999999999999999999887 32    77999999999999988755

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=3.8e-18  Score=145.82  Aligned_cols=181  Identities=14%  Similarity=0.088  Sum_probs=132.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+.... ....+++.+.+++++.. .++..+
T Consensus        19 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~~i~~v~q~~~~~~~~~t   95 (277)
T PRK13652         19 ALNNINFIAPRNSR--IAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKE-NIREVRKFVGLVFQNPDDQIFSPT   95 (277)
T ss_pred             eeeEeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC-CHHHHHhheEEEecCccccccccc
Confidence            45556666688999  9999999999999999999987655  778887653221 12334566777777652 233334


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ....+.+...+.+...++..++  .+.....+..+|+|+.|+     |+...|.++++|||++
T Consensus        96 v~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~  166 (277)
T PRK13652         96 VEQDIAFGPI-------NLGLDEETVAHRVSSALHMLGL--EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA  166 (277)
T ss_pred             HHHHHHhHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            4444432211       1123555556667778888787  555667788999999888     7777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|......+.+.+.++.++     ++++|+.+.+.+.+++++.+.
T Consensus       167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~  212 (277)
T PRK13652        167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD  212 (277)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            99999998888899888753     779999999999999887553

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.68  E-value=6.3e-18  Score=138.35  Aligned_cols=166  Identities=15%  Similarity=0.129  Sum_probs=130.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccc
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL  112 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~  112 (287)
                      ..++|+||+||||++++|++...++  .|.+++--....+   ....-.+.++|++|+.++++..++..|+..+..    
T Consensus        27 TAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~----  102 (352)
T COG4148          27 TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMW----  102 (352)
T ss_pred             EEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEecchhhhhc----
Confidence            7999999999999999999999887  4555542111110   011224679999999999999999999887654    


Q ss_pred             eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHH
Q psy2281         113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYI  187 (287)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i  187 (287)
                         +.      .......++...|+  ++-..++...+|||+.||     |+...|.++++|||.+++|..-..++.-.+
T Consensus       103 ---~~------~~~~fd~iv~lLGI--~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Eilpyl  171 (352)
T COG4148         103 ---KS------MRAQFDQLVALLGI--EHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL  171 (352)
T ss_pred             ---cc------chHhHHHHHHHhCc--HHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHH
Confidence               21      23344556666677  778889999999999988     888999999999999999988888888899


Q ss_pred             HHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC
Q psy2281         188 RDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI  218 (287)
Q Consensus       188 ~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~  218 (287)
                      +.+.++     +.++|+.+++.++.|++..+-++++
T Consensus       172 ERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV  207 (352)
T COG4148         172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKV  207 (352)
T ss_pred             HHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeE
Confidence            999888     6799999999999999875544433

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.68  E-value=1.1e-18  Score=147.23  Aligned_cols=182  Identities=16%  Similarity=0.091  Sum_probs=130.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC------------HHHHHHHHHHHHhc
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT------------REAQQALRRTMEKY   87 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~------------~~~~~~l~~~i~~~   87 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+++.+...            ......+++.+.++
T Consensus        15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v   92 (252)
T TIGR03005        15 VLDGLNFSVAAGEK--VALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMV   92 (252)
T ss_pred             EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEEE
Confidence            44556666688999  9999999999999999999987654  67777654211            11123345567777


Q ss_pred             cCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHH
Q psy2281          88 ITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMC  162 (287)
Q Consensus        88 ~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l  162 (287)
                      +++..++...+..+++......      .......+....+...++..|+  ++...+.+.++|+|+.|+     |+..-
T Consensus        93 ~q~~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~~~  164 (252)
T TIGR03005        93 FQSFNLFPHKTVLDNVTEAPVL------VLGMARAEAEKRAMELLDMVGL--ADKADHMPAQLSGGQQQRVAIARALAMR  164 (252)
T ss_pred             ecCcccCCCCcHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHcCC--hhHhhcChhhcCHHHHHHHHHHHHHHcC
Confidence            7766555444555554332110      1123344555667777888777  555566778899999888     66666


Q ss_pred             HHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         163 EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       163 ~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |+++++|||++++|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       165 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  220 (252)
T TIGR03005       165 PKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFF  220 (252)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            8999999999999999888888888888653     77999999998888887754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.68  E-value=3.2e-18  Score=143.06  Aligned_cols=179  Identities=16%  Similarity=0.145  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+. ...... .++.+.+.+++..+++..+.
T Consensus        16 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i-~~~~~~-~~~~i~~~~q~~~~~~~~t~   91 (236)
T TIGR03864        16 ALDDVSFTVRPGEF--VALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDL-RRAPRA-ALARLGVVFQQPTLDLDLSV   91 (236)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEc-ccCChh-hhhhEEEeCCCCCCcccCcH
Confidence            44555666688999  9999999999999999999987655  677777542 111111 22456666776555444444


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       ....+..+..+.+...++..|+  ++...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus        92 ~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~  162 (236)
T TIGR03864        92 RQNLRYHAA-------LHGLSRAEARERIAALLARLGL--AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG  162 (236)
T ss_pred             HHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence            444432211       1223444455667777888777  555667788999999988     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +|......+.+.+.++.+.     ++++|+.+.+.. +++++.+-
T Consensus       163 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~  206 (236)
T TIGR03864       163 LDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLH  206 (236)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEe
Confidence            9999999999999888742     779999998875 88776553

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.68  E-value=1.7e-18  Score=147.31  Aligned_cols=182  Identities=11%  Similarity=0.070  Sum_probs=125.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE--EEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRL--ILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~--i~~~   97 (287)
                      +.+.++..+++|++  +.|.||||+|||||+++|++.+.+.  .|.+++.+. +.......++.+.+++++...  ....
T Consensus        28 ~l~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~~~~~  104 (267)
T PRK15112         28 AVKPLSFTLREGQT--LAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIRMIFQDPSTSLNPRQ  104 (267)
T ss_pred             eeeeeeEEecCCCE--EEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEEC-CCCchhhHhccEEEEecCchhhcCcch
Confidence            55666777789999  9999999999999999999998655  677887653 211112223345555555321  1111


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..+++.      .......+..+.+...++..|+. +......+.++|+|+.|+     |+...|.++++|||+
T Consensus       105 tv~~~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt  177 (267)
T PRK15112        105 RISQILDFPLRL------NTDLEPEQREKQIIETLRQVGLL-PDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEAL  177 (267)
T ss_pred             hHHHHHHHHHHh------ccCCCHHHHHHHHHHHHHHcCCC-hHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence            122222222220      01233445556677788888872 123345568899999888     677778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       178 ~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l  223 (267)
T PRK15112        178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVM  223 (267)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            999999988888899988653     77999999999988987654

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.68  E-value=3.6e-19  Score=164.41  Aligned_cols=186  Identities=11%  Similarity=0.034  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||++++++.+.+.  .|.+++.+.-........++.+.+++|+..++...+
T Consensus        18 ~~l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   95 (501)
T PRK10762         18 KALSGAALNVYPGRV--MALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLT   95 (501)
T ss_pred             EEeeeeeEEEcCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCCCc
Confidence            345666666788999  9999999999999999999988665  777887553111111122334666777655544445


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++..+...+ .  .+...+..+..+.+...++..|+  ++...+.+.++|+|+.||     |+...|+++++|||++
T Consensus        96 v~e~l~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  170 (501)
T PRK10762         96 IAENIFLGREFV-N--RFGRIDWKKMYAEADKLLARLNL--RFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTD  170 (501)
T ss_pred             HHHHhhhccccc-c--ccCccCHHHHHHHHHHHHHHcCC--CCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcC
Confidence            555554332100 0  01122344555667778888887  444566788999999988     7777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.+.    |+++|+.+.+..++|+++.+
T Consensus       171 ~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l  214 (501)
T PRK10762        171 ALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF  214 (501)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999998888888654    77999999999999988754

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.68  E-value=2.1e-19  Score=159.75  Aligned_cols=185  Identities=14%  Similarity=0.076  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+++|++  +.|.||||+|||||+++|++.+.+.  .|.+++.+.... ....+++.+.+++++..+.+..+
T Consensus        17 ~vL~~vs~~i~~Gei--v~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~-~~~~~~~~ig~v~q~~~l~~~~t   93 (402)
T PRK09536         17 TVLDGVDLSVREGSL--VGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL-SARAASRRVASVPQDTSLSFEFD   93 (402)
T ss_pred             EEEEeeEEEECCCCE--EEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC-CHHHHhcceEEEccCCCCCCCCC
Confidence            445566666689999  9999999999999999999988765  778887553221 12334566777777765555555


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++..+.....  -.+..++. ...+.+.+.++..++  .+...+.+.++|+|+.||     |+...|.++++|||++
T Consensus        94 v~e~v~~~~~~~~--~~~~~~~~-~~~~~v~~~le~vgl--~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPts  168 (402)
T PRK09536         94 VRQVVEMGRTPHR--SRFDTWTE-TDRAAVERAMERTGV--AQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA  168 (402)
T ss_pred             HHHHHHhccchhc--ccccCCCH-HHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence            5554432211000  01222232 334567778888787  556667788999999988     7777889999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.+.    ++++|+.+.+.++++++..+
T Consensus       169 gLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l  212 (402)
T PRK09536        169 SLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLL  212 (402)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            99999888899999998754    77999999999999988744

>PRK05642 DNA replication initiation factor; Validated

Probab=99.68  E-value=3.3e-15  Score=124.34  Aligned_cols=156  Identities=15%  Similarity=0.252  Sum_probs=116.0

Q ss_pred             CCCCCccC--cHHHHHHHHHHHhc-CC--CCcEEEeCCCCCcHHHHHHHHHHHhCC------------------------
Q psy2281          11 NNLQKLDF--HCKQANHLRNLLKE-GD--FPHLLFYGPSGAGKKTRIMALLKELYG------------------------   61 (287)
Q Consensus        11 ~~~~~~~~--~~~~~~~l~~~~~~-g~--~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------------   61 (287)
                      -+|++++.  +..+...+..+... +.  .++++|+||+|+|||+|++++++....                        
T Consensus        16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~   95 (234)
T PRK05642         16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNL   95 (234)
T ss_pred             ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhh
Confidence            36888763  23344555554332 12  234899999999999999999865421                        


Q ss_pred             ---CEEEEeCCCCCC--HHHHHHHHHHHHhccC-CcEEEEEeCCCC----CCcHHHhccc---ceeecCCCCHHHHHHHH
Q psy2281          62 ---PVIILNETDHLT--REAQQALRRTMEKYIT-TCRLILCANSMS----QVIPAIRSRC---LCIRIPAPTHEEIVSVL  128 (287)
Q Consensus        62 ---~~i~ide~d~l~--~~~~~~l~~~i~~~~~-~~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~~~~~~~~~l  128 (287)
                         +++++||++.+.  ...+..|...++.... ...++++++..+    ...+.++||+   .++.+.+++.++...++
T Consensus        96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il  175 (234)
T PRK05642         96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL  175 (234)
T ss_pred             hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence               178999998764  2345667777776544 345666665543    2468899999   67889999999999999


Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         129 TNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      +..+...|+.+++++.+++++.+.||.|.++..++.+.
T Consensus       176 ~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~  213 (234)
T PRK05642        176 QLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLD  213 (234)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            97788889999999999999999999999888877664

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.68  E-value=1.9e-18  Score=152.42  Aligned_cols=175  Identities=15%  Similarity=0.122  Sum_probs=126.8

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+|+.+.....   .....++.+.+++|+..++...+..
T Consensus        16 isl~i~~Gei--~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   93 (354)
T TIGR02142        16 ADFTLPGQGV--TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR   93 (354)
T ss_pred             EEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence            3444578888  9999999999999999999988755  6778875432110   0112344566777766555444555


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++..+..         .....+....+...++..++  ++...+.+.++|+|+.||     |+...|.++++|||++++
T Consensus        94 enl~~~~~---------~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L  162 (354)
T TIGR02142        94 GNLRYGMK---------RARPSERRISFERVIELLGI--GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL  162 (354)
T ss_pred             HHHHHHhh---------ccChhHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence            55544322         11223344556777777777  556667788999999988     677778999999999999


Q ss_pred             cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |......+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l  205 (354)
T TIGR02142       163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVL  205 (354)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            999999999999988754     77999999999999987655

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.68  E-value=1.5e-18  Score=151.32  Aligned_cols=186  Identities=15%  Similarity=0.134  Sum_probs=133.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C-EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcE-
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P-VIILNETDH--LTREAQQALR-RTMEKYITTCR-   92 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~-~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~-   92 (287)
                      +++.++..+.+|++  +.|.|+||||||||+++|++.+.+    . .|.+|+.+.  ++......++ +.+.+++|+.. 
T Consensus        31 ~l~~vsl~i~~Ge~--~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~  108 (330)
T PRK09473         31 AVNDLNFSLRAGET--LGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT  108 (330)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence            45566666788999  999999999999999999999854    2 678887653  2333223333 24667777652 


Q ss_pred             -EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 -LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 -~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                       +....+..+++...+..      +...+.++....+.+.++..|+.-. +....+..++|+|+.||     |+...|++
T Consensus       109 ~l~p~~~v~~~i~~~~~~------~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~l  182 (330)
T PRK09473        109 SLNPYMRVGEQLMEVLML------HKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKL  182 (330)
T ss_pred             hcCCCCCHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence             22223333334333321      2234566667778888888887311 12345788999999998     77778899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      +++|||++++|......+.+.+.++.++     ++++|+...+..++|+++.+..
T Consensus       183 lilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~  237 (330)
T PRK09473        183 LIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYA  237 (330)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence            9999999999999999999999998764     7899999999999999875543

>CHL00181 cbbX CbbX; Provisional

Probab=99.67  E-value=2.9e-15  Score=127.95  Aligned_cols=150  Identities=22%  Similarity=0.270  Sum_probs=107.7

Q ss_pred             CccCcHHHHHHHHHHH----------hcC-----CCCcEEEeCCCCCcHHHHHHHHHHHhCC-------C----------
Q psy2281          15 KLDFHCKQANHLRNLL----------KEG-----DFPHLLFYGPSGAGKKTRIMALLKELYG-------P----------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~----------~~g-----~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~----------   62 (287)
                      +++|...+++.+..++          ..|     ...|++|+|||||||||+++++++.+..       +          
T Consensus        24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~  103 (287)
T CHL00181         24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV  103 (287)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH
Confidence            6888888877666553          111     2334899999999999999999876421       0          


Q ss_pred             ---------------------EEEEeCCCCC---------CHHHHHHHHHHHHhccCCcEEEEEeCCCCC------CcHH
Q psy2281          63 ---------------------VIILNETDHL---------TREAQQALRRTMEKYITTCRLILCANSMSQ------VIPA  106 (287)
Q Consensus        63 ---------------------~i~ide~d~l---------~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~------l~~~  106 (287)
                                           +++|||++.+         ..+.+..|.+.|+....+.++|+++ ..+.      ..++
T Consensus       104 ~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag-~~~~~~~~~~~np~  182 (287)
T CHL00181        104 GQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAG-YKDRMDKFYESNPG  182 (287)
T ss_pred             HHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeC-CcHHHHHHHhcCHH
Confidence                                 8999999976         3456778888888765555555554 3322      3589


Q ss_pred             Hhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHH
Q psy2281         107 IRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ--------SDRNLRRAILMCEAS  165 (287)
Q Consensus       107 l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~G~~r~al~~l~~~  165 (287)
                      ++|||. .+.|++++.+++..++...+++.+..++++....+.+.        .-|+.|.+-+..+.+
T Consensus       183 L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~  250 (287)
T CHL00181        183 LSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA  250 (287)
T ss_pred             HHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            999996 69999999999999999999999988888776555442        124455544444443

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.67  E-value=6.2e-19  Score=147.96  Aligned_cols=189  Identities=13%  Similarity=0.093  Sum_probs=128.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+.-........++.+.+.+++..++...+.
T Consensus        17 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   94 (242)
T TIGR03411        17 ALNDLSLYVDPGEL--RVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTV   94 (242)
T ss_pred             EeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCCCH
Confidence            45556666688988  9999999999999999999987654  7788876432111111122346666666554444455


Q ss_pred             CCCCcHHHhccccee-ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281         100 MSQVIPAIRSRCLCI-RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      .+++.........++ .+.....++....+...++..|+  ++.....+..+|+|+.|+     |+...+.++++|||++
T Consensus        95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~  172 (242)
T TIGR03411        95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL--ADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVA  172 (242)
T ss_pred             HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence            555433221000000 01111223445567777777777  555567788999999888     6666789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|......+.+.+.++.+.   ++++|+.+.+..++++++.+-
T Consensus       173 ~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  216 (242)
T TIGR03411       173 GMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLH  216 (242)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            99999998888888887653   779999999999999877553

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=5.2e-19  Score=147.97  Aligned_cols=180  Identities=14%  Similarity=0.123  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+++|+.  ++|.||||+|||||++++++...+.  -|.+++.+..........++.+.+++++..++...+
T Consensus        19 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t   96 (237)
T PRK11614         19 QALHEVSLHINQGEI--VTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMT   96 (237)
T ss_pred             eeeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCCc
Confidence            345566666788999  9999999999999999999987654  677887653221111223445666666654443334


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE-GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      ..+++..+..       +  ....+....+..+++.. ++  .+.....+.++|+|+.||     |+...|.++++|||+
T Consensus        97 v~~~l~~~~~-------~--~~~~~~~~~~~~~l~~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt  165 (237)
T PRK11614         97 VEENLAMGGF-------F--AERDQFQERIKWVYELFPRL--HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS  165 (237)
T ss_pred             HHHHHHHhhh-------c--cChhHHHHHHHHHHHHHHHH--HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcc
Confidence            4444432211       1  12223333444555544 24  344456678899999888     666678999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.+.    ++++|+...+.+++|+++.+
T Consensus       166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  210 (237)
T PRK11614        166 LGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVL  210 (237)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEE
Confidence            999999988888888888654    77999999999999988755

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=1.2e-18  Score=149.13  Aligned_cols=180  Identities=17%  Similarity=0.125  Sum_probs=130.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +++.++..+.+|++  +.|.||||+|||||++++++...+.  .|.+|+.+.-.......+++.+.+++++.. .++..+
T Consensus        25 vl~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~  102 (280)
T PRK13633         25 ALDDVNLEVKKGEF--LVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI  102 (280)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence            56666666788999  9999999999999999999998755  788887653221122334566777777652 122223


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ....+..+..+.+..+++..|+  ++...+.+.++|+|+.|+     ++..-|+++++|||++
T Consensus       103 v~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  173 (280)
T PRK13633        103 VEEDVAFGPE-------NLGIPPEEIRERVDESLKKVGM--YEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTA  173 (280)
T ss_pred             HHHHHHhhHh-------hcCCCHHHHHHHHHHHHHHCCC--HhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            3333322211       1123455666777888888887  555667788999999888     6777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     ++++|+.+.+.. +++++.+
T Consensus       174 gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l  217 (280)
T PRK13633        174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVM  217 (280)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEE
Confidence            99999999999999988653     779999998876 8877644

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=6.1e-18  Score=144.94  Aligned_cols=181  Identities=15%  Similarity=0.105  Sum_probs=134.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcE-EEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCR-LILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~-~i~~~   97 (287)
                      +++.++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+++.+.- .......+++.+.+++++.. .++..
T Consensus        21 ~l~~vs~~i~~Ge~--~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~   98 (283)
T PRK13636         21 ALKGININIKKGEV--TAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA   98 (283)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc
Confidence            55666667789999  9999999999999999999987655  7888886531 11223345667888887753 22333


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++.....       ....+..+..+.+...++..|+  .+.....+.++|+|+.||     |+...|.++++|||+
T Consensus        99 tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt  169 (283)
T PRK13636         99 SVYQDVSFGAV-------NLKLPEDEVRKRVDNALKRTGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT  169 (283)
T ss_pred             cHHHHHHhHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            44455533221       1123455566677888888887  555667788999999888     777778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.++     ++++|+.+.+..++++++.+
T Consensus       170 ~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l  215 (283)
T PRK13636        170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVM  215 (283)
T ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            999999999888899888763     77999999999999988755

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=8.8e-19  Score=149.33  Aligned_cols=179  Identities=12%  Similarity=0.158  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++.. .++..+
T Consensus        24 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i-~~~~~~~~~~~i~~v~q~~~~~~~~~t  100 (271)
T PRK13632         24 ALKNVSFEINEGEY--VAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITI-SKENLKEIRKKIGIIFQNPDNQFIGAT  100 (271)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEec-CcCCHHHHhcceEEEEeCHHHhcCccc
Confidence            45566666688999  9999999999999999999987654  778887653 21112334556777777652 333445


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ....+.++....+.++++..++  ++...+.+.++|+|+.|+     |+..-+.++++|||++
T Consensus       101 v~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~  171 (271)
T PRK13632        101 VEDDIAFGLE-------NKKVPPKKMKDIIDDLAKKVGM--EDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTS  171 (271)
T ss_pred             HHHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCC--HHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            5555543322       1123445566677888888887  555666778899999888     6666788999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     ++++|+...+. .+++++.+
T Consensus       172 gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l  215 (271)
T PRK13632        172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVF  215 (271)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEE
Confidence            99999999999999888643     67899998875 67776644

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.67  E-value=3.1e-18  Score=145.56  Aligned_cols=184  Identities=15%  Similarity=0.130  Sum_probs=130.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcE--EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCR--LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~--~i~   95 (287)
                      +++.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+..  .......+++.+.+++++..  +..
T Consensus        26 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~  103 (265)
T TIGR02769        26 VLTNVSLSIEEGET--VGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP  103 (265)
T ss_pred             EeeCceeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence            45667777789999  9999999999999999999987655  6788875432  22222234556777777642  222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++..++..      ...+...+....+..+++..|+. +......+.++|+|+.|+     |+...++++++||
T Consensus       104 ~~tv~~~l~~~~~~------~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDE  176 (265)
T TIGR02769       104 RMTVRQIIGEPLRH------LTSLDESEQKARIAELLDMVGLR-SEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE  176 (265)
T ss_pred             CCCHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHcCCC-hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            23344444333221      11223334455677778887872 133456678899999888     6667789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      |++++|......+.+.+.++.+.     ++++|+...+..++++++.+-
T Consensus       177 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~  225 (265)
T TIGR02769       177 AVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD  225 (265)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEe
Confidence            99999999888888899888753     789999999999999877553

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.67  E-value=3.8e-15  Score=134.08  Aligned_cols=231  Identities=16%  Similarity=0.179  Sum_probs=145.0

Q ss_pred             CCCCcc-C--cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhC---CC---------------------
Q psy2281          12 NLQKLD-F--HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELY---GP---------------------   62 (287)
Q Consensus        12 ~~~~~~-~--~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~---------------------   62 (287)
                      +|++++ |  +..+......+... +. .++++|+||+|+|||+|++++++.+.   +.                     
T Consensus       108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~  187 (405)
T TIGR00362       108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRN  187 (405)
T ss_pred             cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHc
Confidence            466644 3  22345556655543 32 23389999999999999999987752   11                     


Q ss_pred             --------------EEEEeCCCCCCH--HHHHHHHHHHHhcc-CCcEEEEEeCCCC----CCcHHHhcccc---eeecCC
Q psy2281          63 --------------VIILNETDHLTR--EAQQALRRTMEKYI-TTCRLILCANSMS----QVIPAIRSRCL---CIRIPA  118 (287)
Q Consensus        63 --------------~i~ide~d~l~~--~~~~~l~~~i~~~~-~~~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~  118 (287)
                                    +++|||++.+..  ..+..+...+.... .+..++++++..+    .+.+.++||+.   .+.+.+
T Consensus       188 ~~~~~~~~~~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~  267 (405)
T TIGR00362       188 NKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEP  267 (405)
T ss_pred             CCHHHHHHHHHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCC
Confidence                          799999998753  34566777666543 3345677766543    36678999984   689999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhc-
Q psy2281         119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISE-  197 (287)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~-  197 (287)
                      |+.+++..+++..++..++.+++++++++++.+.|++|.+...+..+.....- .. ...+.    +.+.++....+.. 
T Consensus       268 pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~-~~-~~it~----~~~~~~L~~~~~~~  341 (405)
T TIGR00362       268 PDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASL-TG-KPITL----ELAKEALKDLLRAK  341 (405)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hC-CCCCH----HHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999855555444332110 00 11222    2333333332211 


Q ss_pred             ---cChhHHHHHHHHHH-----HHHhcCCCH-HHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy2281         198 ---QSPKKLLEVRTRLY-----ELLVHSIPV-NVLFKYLLEGLLANCDSDLKSKSIEMAA  248 (287)
Q Consensus       198 ---~~~~~~~~~~~~~~-----~l~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~  248 (287)
                         -+.+.+..+....|     ++...+-.. -....++..|+++++.+.+..++.+.++
T Consensus       342 ~~~it~~~I~~~Va~~~~v~~~~l~~~~r~~~~~~~R~~amyl~~~~~~~s~~~ig~~fg  401 (405)
T TIGR00362       342 KKEITIENIQEVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLPEIGRAFG  401 (405)
T ss_pred             CCCCCHHHHHHHHHHHcCCCHHHHhCCCCCcccchHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence               12333333333333     222211111 1124588888888777666766666554

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.67  E-value=3e-18  Score=140.85  Aligned_cols=175  Identities=14%  Similarity=0.142  Sum_probs=121.6

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+......   .++.+.+++++..++...+..++
T Consensus        16 ~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~~tv~en   90 (211)
T cd03298          16 HFDLTFAQGEI--TAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP---ADRPVSMLFQENNLFAHLTVEQN   90 (211)
T ss_pred             ceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH---hHccEEEEecccccCCCCcHHHH
Confidence            44555578888  9999999999999999999987654  67788754211111   12346666666544333333344


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +..+...     .. .. .++..+.+...++..++  ++.....+.++|+|+.|+     |+...|+++++|||++++|.
T Consensus        91 l~~~~~~-----~~-~~-~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~  161 (211)
T cd03298          91 VGLGLSP-----GL-KL-TAEDRQAIEVALARVGL--AGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDP  161 (211)
T ss_pred             Hhccccc-----cc-Cc-cHHHHHHHHHHHHHcCC--HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            3222110     00 11 12334456777777787  455566778999999888     66667899999999999999


Q ss_pred             ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .....+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       162 ~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  202 (211)
T cd03298         162 ALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFL  202 (211)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEE
Confidence            9999999999988653     77999999999888876543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.66  E-value=3.8e-18  Score=140.37  Aligned_cols=175  Identities=12%  Similarity=0.176  Sum_probs=123.0

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+|+.+...   ....++.+.+++++..++...+..++
T Consensus        16 ~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---~~~~~~~i~~v~q~~~~~~~~t~~en   90 (213)
T TIGR01277        16 EFDLNVADGEI--VAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTG---LAPYQRPVSMLFQENNLFAHLTVRQN   90 (213)
T ss_pred             eeEEEEeCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc---CChhccceEEEeccCccCCCCcHHHH
Confidence            34445578888  9999999999999999999987655  67788765321   11233456666666554443344455


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +..++..+     . ... ......+..+++..++  ++...+.+.++|+|+.||     |+..-|.++++|||++++|.
T Consensus        91 ~~~~~~~~-----~-~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~  161 (213)
T TIGR01277        91 IGLGLHPG-----L-KLN-AEQQEKVVDAAQQVGI--ADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP  161 (213)
T ss_pred             HHhHhhcc-----C-Ccc-HHHHHHHHHHHHHcCc--HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence            43322210     0 111 1234456677777777  455566677899999888     66677899999999999999


Q ss_pred             ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .....+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       162 ~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l  202 (213)
T TIGR01277       162 LLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVV  202 (213)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEE
Confidence            9999999999888653     77999999888888876544

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.66  E-value=2.9e-18  Score=159.15  Aligned_cols=182  Identities=14%  Similarity=0.112  Sum_probs=128.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeC-----------------------CC----
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNE-----------------------TD----   70 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide-----------------------~d----   70 (287)
                      +.+.++..+.+|++  ++|.||||||||||+++|++..  .+.  .|.+++                       .+    
T Consensus        15 ~l~~is~~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~   92 (520)
T TIGR03269        15 VLKNISFTIEEGEV--LGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE   92 (520)
T ss_pred             eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccccccc
Confidence            45566666788999  9999999999999999999986  333  566652                       10    


Q ss_pred             ---CC--CHHHHHHHHHHHHhccCC-cEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2281          71 ---HL--TREAQQALRRTMEKYITT-CRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA  144 (287)
Q Consensus        71 ---~l--~~~~~~~l~~~i~~~~~~-~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  144 (287)
                         ..  .......+++.+.+++|+ ..++...+..+++..++.       ....+..+..+.+...++..|+  ++...
T Consensus        93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~  163 (520)
T TIGR03269        93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALE-------EIGYEGKEAVGRAVDLIEMVQL--SHRIT  163 (520)
T ss_pred             chhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhh
Confidence               00  011112234456666664 233333344445544332       1223445566677888888887  55556


Q ss_pred             HHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         145 LRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       145 ~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +.+.++|+|+.||     |+...|+++++|||++++|+.....+.+.+.++.++     |+++|+...+..++++++.+-
T Consensus       164 ~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~  243 (520)
T TIGR03269       164 HIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLE  243 (520)
T ss_pred             cCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEe
Confidence            6788999999998     667778999999999999999999999999998653     789999999999999887553

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=6.8e-18  Score=144.13  Aligned_cols=181  Identities=15%  Similarity=0.126  Sum_probs=132.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcE-EEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCR-LILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~-~i~~~   97 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++.+.+.  .|.+++.+.- .......+++.+.+++++.. .++..
T Consensus        17 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~   94 (275)
T PRK13639         17 ALKGINFKAEKGEM--VALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP   94 (275)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence            45556666688999  9999999999999999999987654  7788886531 11122345566888877752 22333


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++.....       ....+..+....+..+++..++  .+...+.+.++|+|+.|+     |+...++++++|||+
T Consensus        95 tv~e~i~~~~~-------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt  165 (275)
T PRK13639         95 TVEEDVAFGPL-------NLGLSKEEVEKRVKEALKAVGM--EGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPT  165 (275)
T ss_pred             cHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            44455432211       0123455566677788888887  455566788999999888     666778899999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.+.    ++++|+.+.+..++++++.+
T Consensus       166 ~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l  210 (275)
T PRK13639        166 SGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVM  210 (275)
T ss_pred             cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            999999999999999888653    78999999999989987654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=9e-19  Score=147.68  Aligned_cols=186  Identities=13%  Similarity=0.132  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTREAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~   93 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||+++|++...+     .  -|.+++.+.-. .....+++.+.+++++..+
T Consensus        17 ~~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~-~~~~~~~~~i~~v~q~~~~   93 (250)
T PRK14247         17 EVLDGVNLEIPDNTI--TALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK-MDVIELRRRVQMVFQIPNP   93 (250)
T ss_pred             eeeecceeEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCc-CCHHHHhccEEEEeccCcc
Confidence            355667777789999  999999999999999999998752     1  67788755321 1122345567777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +...+..+++.....-+    .. .....+..+.+...++..++.  +.......+.++|+|+.||     |+..-+.++
T Consensus        94 ~~~~tv~enl~~~~~~~----~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  168 (250)
T PRK14247         94 IPNLSIFENVALGLKLN----RL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVL  168 (250)
T ss_pred             CCCCcHHHHHHHHHHhc----cc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            54455555554332200    01 113345556677788887773  1223445577899999888     666678999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+...+++++.+-
T Consensus       169 lLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  219 (250)
T PRK14247        169 LADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLY  219 (250)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            999999999999988888888887533   779999999988889887553

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=6.9e-19  Score=162.69  Aligned_cols=185  Identities=11%  Similarity=0.043  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--P--VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...+  .  .|.+++.+.-........++.+.+++|+..++..
T Consensus        19 ~il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~   96 (506)
T PRK13549         19 KALDNVSLKVRAGEI--VSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE   96 (506)
T ss_pred             EeecceeEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence            456677777789999  999999999999999999998874  2  7778876532111111223447777776654444


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++..+...+    .....+.++..+.+...++..|+  ++...+.+.++|+|+.||     |+...|+++++|||
T Consensus        97 ~tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEP  170 (506)
T PRK13549         97 LSVLENIFLGNEIT----PGGIMDYDAMYLRAQKLLAQLKL--DINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEP  170 (506)
T ss_pred             CcHHHHhhhccccc----ccCCcCHHHHHHHHHHHHHHcCC--CCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            45555554332110    01112344555667788888887  444566788999999998     66677899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|+.....+.+.+.++.+.    |+++|+...+..++|+++.+
T Consensus       171 t~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l  216 (506)
T PRK13549        171 TASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVI  216 (506)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEE
Confidence            9999999999999999888653    78999999999999987744

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.66  E-value=2.7e-18  Score=142.85  Aligned_cols=183  Identities=16%  Similarity=0.135  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH--HHHHHHHHHHhccCCcE--EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE--AQQALRRTMEKYITTCR--LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~--~~~~l~~~i~~~~~~~~--~i~   95 (287)
                      +.+.++..+++|++  ++|.||||+|||||+++|++...+.  .|.+++.+.....  ....+++.+.+++++..  +..
T Consensus        20 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (228)
T cd03257          20 ALDDVSFSIKKGET--LGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNP   97 (228)
T ss_pred             eecCceeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCC
Confidence            45666667789999  9999999999999999999987655  6778875432111  12234455677776652  222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHH-HHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEI-VSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      ..+..+++...+..      +.....++. .......++..++. .......+.++|+|+.|+     |+...+.++++|
T Consensus        98 ~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  170 (228)
T cd03257          98 RMTIGEQIAEPLRI------HGKLSKKEARKEAVLLLLVGVGLP-EEVLNRYPHELSGGQRQRVAIARALALNPKLLIAD  170 (228)
T ss_pred             cCCHHHHHHHHHHh------ccCCcHHHHHHHHHHHHHHHCCCC-hhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence            33444454333221      111112222 22234566666662 134456678899999988     666678999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.++     ++++|+...+...+++++.+
T Consensus       171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  219 (228)
T cd03257         171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVM  219 (228)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEE
Confidence            999999999999999999888753     78999999888888877644

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.66  E-value=9.1e-19  Score=147.72  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.      ..+++.+.+++++..++...+
T Consensus        26 ~il~~isl~i~~Ge~--~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~------~~~~~~i~~v~q~~~l~~~~t   97 (257)
T PRK11247         26 TVLNQLDLHIPAGQF--VAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPL------AEAREDTRLMFQDARLLPWKK   97 (257)
T ss_pred             ceeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEH------HHhhCceEEEecCccCCCCCc
Confidence            345566666688999  9999999999999999999987654  566676431      122334555555544332223


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++..+         +.  .  .....+...++..|+  ++...+.+.++|+|+.|+     ++...+.++++|||++
T Consensus        98 v~enl~~~---------~~--~--~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~  162 (257)
T PRK11247         98 VIDNVGLG---------LK--G--QWRDAALQALAAVGL--ADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLG  162 (257)
T ss_pred             HHHHHHhc---------cc--c--hHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence            33333221         11  1  123445667777777  555667788999999888     6666789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       163 ~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l  207 (257)
T PRK11247        163 ALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLI  207 (257)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999998888889888643     78999999999988987654

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=99.66  E-value=5.8e-15  Score=121.51  Aligned_cols=157  Identities=22%  Similarity=0.375  Sum_probs=115.2

Q ss_pred             CCCCcc-C--cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhC---CC---------------------
Q psy2281          12 NLQKLD-F--HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELY---GP---------------------   62 (287)
Q Consensus        12 ~~~~~~-~--~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~---------------------   62 (287)
                      +|++++ |  +..+....+.+.+. +. .++++|+||+|+|||+|++++++...   +.                     
T Consensus         6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~   85 (219)
T PF00308_consen    6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD   85 (219)
T ss_dssp             SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT
T ss_pred             ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc
Confidence            677775 3  55667777776654 32 23489999999999999999987752   11                     


Q ss_pred             --------------EEEEeCCCCCCHH--HHHHHHHHHHhccC-CcEEEEEeCCCC----CCcHHHhcccc---eeecCC
Q psy2281          63 --------------VIILNETDHLTRE--AQQALRRTMEKYIT-TCRLILCANSMS----QVIPAIRSRCL---CIRIPA  118 (287)
Q Consensus        63 --------------~i~ide~d~l~~~--~~~~l~~~i~~~~~-~~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~  118 (287)
                                    +++||+++.+...  .+..+...++.... ...++++++..+    .+.+.++||+.   .+.+.+
T Consensus        86 ~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~  165 (219)
T PF00308_consen   86 GEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQP  165 (219)
T ss_dssp             TSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE--
T ss_pred             ccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCC
Confidence                          9999999988754  37778887777643 346777775543    36778999984   688999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281         119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      |+.++..+++.+.+...|+.+++++.+++++...+++|.....+.++...
T Consensus       166 pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~  215 (219)
T PF00308_consen  166 PDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY  215 (219)
T ss_dssp             --HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987777776543

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.66  E-value=1.7e-17  Score=123.85  Aligned_cols=165  Identities=16%  Similarity=0.212  Sum_probs=128.5

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      .++..+.+|++  +-+.||+|||||||+.-+.+.+.+.     -+.++|.+.-.   ..+-.+.++..+|+.-++...++
T Consensus        20 ~~n~Tia~Gei--vtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~---lPa~qRq~GiLFQD~lLFphlsV   94 (213)
T COG4136          20 NVNFTIAKGEI--VTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM---LPAAQRQIGILFQDALLFPHLSV   94 (213)
T ss_pred             eeeEEecCCcE--EEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccc---cchhhhheeeeeccccccccccc
Confidence            45556678999  9999999999999999999998876     78888765311   12234678889999999999999


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+|+..++-        .....+..++.....+++.|+  +....+....+|||+..|     ++...|+.+++|||++.
T Consensus        95 g~Nl~fAlp--------~~~KG~aRr~~a~aAL~~~gL--~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~  164 (213)
T COG4136          95 GQNLLFALP--------ATLKGNARRNAANAALERSGL--DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSR  164 (213)
T ss_pred             ccceEEecC--------cccccHHHHhhHHHHHHHhcc--chhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhH
Confidence            999876542        234455677777788888888  777888899999998766     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLL  204 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~  204 (287)
                      +|...+..+.+.++.-+..     ++++|+..++.
T Consensus       165 LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp  199 (213)
T COG4136         165 LDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP  199 (213)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC
Confidence            9987777777666655444     77888887765

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=2e-18  Score=145.78  Aligned_cols=186  Identities=14%  Similarity=0.097  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCC-HHHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLT-REAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||++++++...+       ..|.+|+.+.-. ......+++.+.+++++..
T Consensus        18 ~~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~   95 (253)
T PRK14267         18 HVIKGVDLKIPQNGV--FALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN   95 (253)
T ss_pred             eeeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence            456667777789999  999999999999999999998753       167888765211 1111234555777777765


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++...+..+++.....-+    .+. .+.++....+...++..++.  +.......+.++|+|+.||     |+...|++
T Consensus        96 ~~~~~tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  170 (253)
T PRK14267         96 PFPHLTIYDNVAIGVKLN----GLV-KSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKI  170 (253)
T ss_pred             cCCCCcHHHHHHHHHHhc----Ccc-CCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            544444555554332100    010 13344455666777777762  1233455678899999888     66667889


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++|+++.+
T Consensus       171 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l  221 (253)
T PRK14267        171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFL  221 (253)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEE
Confidence            9999999999999888888888887643   77999999999999987655

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=3.4e-18  Score=150.62  Aligned_cols=172  Identities=18%  Similarity=0.184  Sum_probs=125.4

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++..+++|++  ++|.||||||||||+++|++...++  .|.+++.+.....   .....++.+.+++|+..++...+..
T Consensus        17 vsl~i~~Ge~--~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   94 (352)
T PRK11144         17 VNLTLPAQGI--TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR   94 (352)
T ss_pred             EEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence            4444578888  9999999999999999999987655  6778875422110   0112344567777776555544555


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++..++.         .    ...+.+...++..|+  ++...+.+.++|+|+.||     |+...|+++++|||++++
T Consensus        95 enl~~~~~---------~----~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L  159 (352)
T PRK11144         95 GNLRYGMA---------K----SMVAQFDKIVALLGI--EPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL  159 (352)
T ss_pred             HHHHhhhh---------h----hhHHHHHHHHHHcCC--chhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence            55543321         1    123446667777777  566677788999999888     777778999999999999


Q ss_pred             cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      |......+.+.+.++.++     ++++|+.+.+..++|+++.+-
T Consensus       160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~  203 (352)
T PRK11144        160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLE  203 (352)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEe
Confidence            999998888899888764     789999999999999877553

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=5.4e-18  Score=144.61  Aligned_cols=180  Identities=12%  Similarity=0.042  Sum_probs=129.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEE-EEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRL-ILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~-i~~~~   98 (287)
                      +.+.++..+++|++  +.|.||||+|||||+++|++.+.+.  .|.+++.+.-.......+++.+.++++++.. ++..+
T Consensus        17 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t   94 (274)
T PRK13644         17 ALENINLVIKKGEY--IGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT   94 (274)
T ss_pred             eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccch
Confidence            45566666788999  9999999999999999999987655  7788876532111123345567777766532 33334


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ....+..+..+.+...++..|+  .+.....+..+|+|+.|+     |+...|.++++|||++
T Consensus        95 v~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~  165 (274)
T PRK13644         95 VEEDLAFGPE-------NLCLPPIEIRKRVDRALAEIGL--EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS  165 (274)
T ss_pred             HHHHHHhhHH-------HcCCCHHHHHHHHHHHHHHCCC--HHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            4444432211       1123555666677788888887  455566778899999888     6777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.+.    ++++|+...+. .++++..+
T Consensus       166 gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l  208 (274)
T PRK13644        166 MLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVM  208 (274)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEE
Confidence            99999988888888888654    77999999885 58887654

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.66  E-value=8.8e-18  Score=132.64  Aligned_cols=188  Identities=17%  Similarity=0.142  Sum_probs=137.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc--EEEEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC--RLILC   96 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~--~~i~~   96 (287)
                      .+...++..+.+|++  +.+.|.||+||||+++++++.+.++  .|+||++|. +.-....-..++..++|++  ..+..
T Consensus        20 ~~l~~~sL~I~~g~F--vtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dV-tk~~~~~RA~~larVfQdp~~gt~~~   96 (263)
T COG1101          20 RALNGLSLEIAEGDF--VTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV-TKKSVAKRANLLARVFQDPLAGTAPE   96 (263)
T ss_pred             HHHhcCceeecCCce--EEEEcCCCccHHHHHHHhhCccccCCceEEECceec-ccCCHHHHhhHHHHHhcchhhCCccc
Confidence            445566666788999  9999999999999999999999877  899998774 2222222233466666665  24455


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH------HHHhhcCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC------EASKVQQY  170 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l------~~~~~~de  170 (287)
                      .+..+|+.-+- +|.....+..--....++.....+...++.+++...+.+.-+|||+ |+|+..+      |+++++||
T Consensus        97 lTieENl~la~-~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQ-RQalsL~MAtl~~pkiLLLDE  174 (263)
T COG1101          97 LTIEENLALAE-SRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQ-RQALSLLMATLHPPKILLLDE  174 (263)
T ss_pred             ccHHHHHHHHH-hcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchH-HHHHHHHHHhcCCCcEEEecc
Confidence            56667765542 3443323333223456666777777777777787888888899995 5544433      67888999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .+.++||...+.+++.-.+++++     ++++|+++++..+.+++..+
T Consensus       175 HTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImL  222 (263)
T COG1101         175 HTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIML  222 (263)
T ss_pred             hhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEE
Confidence            99999999999999888888877     88999999999999998754

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=99.66  E-value=1e-14  Score=120.66  Aligned_cols=121  Identities=15%  Similarity=0.212  Sum_probs=101.1

Q ss_pred             CCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------------------------------------------
Q psy2281          35 FPH-LLFYGPSGAGKKTRIMALLKELYGP---------------------------------------------------   62 (287)
Q Consensus        35 ~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------------------------------   62 (287)
                      .|| ++|+||.|+||.+++.++++.+.+.                                                   
T Consensus         6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e   85 (261)
T PRK05818          6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE   85 (261)
T ss_pred             CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence            466 9999999999999999999887532                                                   


Q ss_pred             -----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC----------CHHHHHHH
Q psy2281          63 -----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP----------THEEIVSV  127 (287)
Q Consensus        63 -----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~----------~~~~~~~~  127 (287)
                           +++|+++|.++..+.++|++.+|+|++++.|+++++..+.++++++|||+.+.|+++          ++.++.+.
T Consensus        86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i~~~  165 (261)
T PRK05818         86 SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYFQYI  165 (261)
T ss_pred             cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHHHHH
Confidence                 999999999999999999999999999999999999999999999999999999877          33333333


Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q psy2281         128 LTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA  164 (287)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~  164 (287)
                      +..   ..++  ++    .++..+.|+..+|+.....
T Consensus       166 L~~---~~~~--d~----~i~~~a~g~~~~a~~l~~~  193 (261)
T PRK05818        166 LLS---FYSV--DE----QLQAYNNGSFSKLKNIIET  193 (261)
T ss_pred             HHH---ccCc--cH----HHHHHcCCCHHHHHHHHHH
Confidence            322   2232  33    6778899999999998884

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.66  E-value=1.5e-18  Score=145.78  Aligned_cols=188  Identities=14%  Similarity=0.052  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++..  .+.  .|.+++.+.-........+..+.+++++..++...
T Consensus        15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   92 (243)
T TIGR01978        15 ILKGVNLTVKKGEI--HAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV   92 (243)
T ss_pred             EEeccceEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence            45566667788999  9999999999999999999984  222  77888765321111111122255556665544333


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHH-HHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLA-QQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~-~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      +..+++................+..+..+.+...++..++  ++.. .+.+. .+|+|+.|+     |+...+.++++||
T Consensus        93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE  170 (243)
T TIGR01978        93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM--DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE  170 (243)
T ss_pred             CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCC--chhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            3333333222111000000112334455667778888887  4332 34454 499999888     6667789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l  213 (287)
                      |++++|......+.+.+.++.+.    ++++|+...+... +++++.+
T Consensus       171 Pt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l  218 (243)
T TIGR01978       171 IDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVL  218 (243)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence            99999999999999999888653    7799999999887 6877644

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.65  E-value=1.9e-18  Score=143.87  Aligned_cols=179  Identities=15%  Similarity=0.098  Sum_probs=122.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||||||||+++|++.+.+.  .|.+++.+...........+.+.+++++..++...+.
T Consensus        15 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (230)
T TIGR03410        15 ILRGVSLEVPKGEV--TCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTV   92 (230)
T ss_pred             EecceeeEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCCcH
Confidence            45566666788999  9999999999999999999988654  6778875532211112223456777777655443344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       .......+   .....++..+. ++....+.+.++|+|+.|+     |+...+.++++|||+++
T Consensus        93 ~~~l~~~~~-------~~~~~~~~---~~~~~l~~~~~-l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~  161 (230)
T TIGR03410        93 EENLLTGLA-------ALPRRSRK---IPDEIYELFPV-LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEG  161 (230)
T ss_pred             HHHHHHHHH-------hcCcchHH---HHHHHHHHHHh-HHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence            444433221       11111122   22333443331 1344456677899999888     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.     ++++|+.+.+..++++++.+
T Consensus       162 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l  205 (230)
T TIGR03410       162 IQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVM  205 (230)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999999999888752     78999999999888887654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=8.1e-18  Score=144.16  Aligned_cols=181  Identities=13%  Similarity=0.111  Sum_probs=128.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH---HHHHHHHHHHHhccCCcE-EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR---EAQQALRRTMEKYITTCR-LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~---~~~~~l~~~i~~~~~~~~-~i~   95 (287)
                      +.+.++..+++|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-..   .....+++.+.+++++.. .++
T Consensus        22 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~   99 (280)
T PRK13649         22 ALFDVNLTIEDGSY--TAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF   99 (280)
T ss_pred             eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence            45556666688999  9999999999999999999987655  677887542110   112334556777777642 222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      ..+..+++.....       ....+.++..+.+...++..++  .+ ...+.+.++|+|+.||     |+...+.++++|
T Consensus       100 ~~tv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD  170 (280)
T PRK13649        100 EETVLKDVAFGPQ-------NFGVSQEEAEALAREKLALVGI--SESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLD  170 (280)
T ss_pred             cccHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--ChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            2344444433221       1123445556667777777777  43 3456678899999888     666678999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       171 EPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  218 (280)
T PRK13649        171 EPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVL  218 (280)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEE
Confidence            999999999988888888888653    77999999998888887654

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.65  E-value=1.2e-17  Score=137.60  Aligned_cols=175  Identities=17%  Similarity=0.124  Sum_probs=121.3

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      .++..+.+ +.  ++|.||||+|||||++++++.+.+.  .|.+++.+.....   .....++.+.+++++..++...+.
T Consensus        16 ~vsl~i~~-e~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~   92 (214)
T cd03297          16 KIDFDLNE-EV--TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV   92 (214)
T ss_pred             CceEEEcc-ee--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence            44555567 77  9999999999999999999987654  6777775422111   112234456666666544333334


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       .  .......+.+.+.++..++  ++...+.+.++|+|+.|+     |+...|+++++|||+++
T Consensus        93 ~~~l~~~~~-------~--~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  161 (214)
T cd03297          93 RENLAFGLK-------R--KRNREDRISVDELLDLLGL--DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSA  161 (214)
T ss_pred             HHHHHHHHh-------h--CCHHHHHHHHHHHHHHcCC--HhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            344332211       0  1223334556777777777  555667788999999888     66777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     ++++|+.+.+..++++++.+
T Consensus       162 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  205 (214)
T cd03297         162 LDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM  205 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEE
Confidence            9999999999999888653     77999999998888876543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.5e-18  Score=146.76  Aligned_cols=188  Identities=15%  Similarity=0.172  Sum_probs=127.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-........+..+.+++++..++...+.
T Consensus        20 ~l~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv   97 (255)
T PRK11300         20 AVNNVNLEVREQEI--VSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTV   97 (255)
T ss_pred             EEEeeeeEEcCCeE--EEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcH
Confidence            45566666788988  9999999999999999999987655  7778875432111111112224455666555444455


Q ss_pred             CCCCcHHHhccc------ceeecC--CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281         100 MSQVIPAIRSRC------LCIRIP--APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       100 ~~~l~~~l~sr~------~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      .+++..+...+.      ..+...  .....+....+...++..|+  .+...+.+.++|+|+.||     |+..-|.++
T Consensus        98 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll  175 (255)
T PRK11300         98 IENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGL--LEHANRQAGNLAYGQQRRLEIARCMVTQPEIL  175 (255)
T ss_pred             HHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCCh--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            555443321110      000000  01112333456666777776  556677788999999888     667778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       176 llDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l  227 (255)
T PRK11300        176 MLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV  227 (255)
T ss_pred             EEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999999999999888653     77999999999999987654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.65  E-value=5.8e-18  Score=135.52  Aligned_cols=193  Identities=16%  Similarity=0.100  Sum_probs=138.8

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT   89 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~   89 (287)
                      +++.-+|..+++..++..++.|++  +++.||||+||||++++|++...+.  .|.+++.|..........+.-+.++++
T Consensus         8 ~l~~~YG~~~~L~gvsl~v~~Gei--v~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPe   85 (237)
T COG0410           8 NLSAGYGKIQALRGVSLEVERGEI--VALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPE   85 (237)
T ss_pred             eEeecccceeEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcc
Confidence            445556666777788888899999  9999999999999999999998865  889998875443444555677999999


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      ...++...|+.+|+.-+...+-        .+......++++.+-+-. +.+...+.-..+|||+.|.     |++..|+
T Consensus        86 gR~iF~~LTVeENL~~g~~~~~--------~~~~~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm~~Pk  156 (237)
T COG0410          86 GRRIFPRLTVEENLLLGAYARR--------DKEAQERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALMSRPK  156 (237)
T ss_pred             cccchhhCcHHHHHhhhhhccc--------ccccccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHhcCCC
Confidence            9999999999999876533111        000111112222111100 0112222334466776555     8999999


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      ++++|||+.++.+....++.+.|.++.++     ++++++...+.++.|+.|.+-.
T Consensus       157 lLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~  212 (237)
T COG0410         157 LLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLEN  212 (237)
T ss_pred             EEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeC
Confidence            99999999999999999999999999875     6688888899999999885533

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=9.1e-19  Score=148.04  Aligned_cols=184  Identities=13%  Similarity=0.055  Sum_probs=125.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|++  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++..+....+.
T Consensus        17 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv   93 (255)
T PRK11231         17 ILNDLSLSLPTGKI--TALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI-SMLSSRQLARRLALLPQHHLTPEGITV   93 (255)
T ss_pred             EEeeeeeEEcCCcE--EEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEh-HHCCHHHHhhheEEecccCCCCCCccH
Confidence            45566666788998  9999999999999999999987644  677777542 111112334556777766543322233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..+.......  +.... ++....+...++..++  ++.....+.++|+|+.||     |+...|.++++|||+++
T Consensus        94 ~~~i~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  168 (255)
T PRK11231         94 RELVAYGRSPWLSL--WGRLS-AEDNARVNQAMEQTRI--NHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTY  168 (255)
T ss_pred             HHHHHhccchhhhh--ccCCC-HHHHHHHHHHHHHcCC--HHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            33332211000000  11111 2334456667777777  455566778899999888     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.    ++++|+...+.+++++++.+
T Consensus       169 LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l  211 (255)
T PRK11231        169 LDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL  211 (255)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence            9999988888888887653    77999999999999988755

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.65  E-value=6.2e-18  Score=147.44  Aligned_cols=162  Identities=14%  Similarity=0.153  Sum_probs=122.1

Q ss_pred             EeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecC
Q psy2281          40 FYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP  117 (287)
Q Consensus        40 l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~  117 (287)
                      |.||||||||||+++|++...+.  .|.+|+.+.....   ...+.+.+++++..++...+..+++..+++       +.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~---~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~~   70 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVP---PHLRHINMVFQSYALFPHMTVEENVAFGLK-------MR   70 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCC---HHHCCEEEEecCccccCCCcHHHHHHHHHh-------hc
Confidence            57999999999999999988755  7788875432111   123456777777665555566666655433       22


Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHH
Q psy2281         118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK  192 (287)
Q Consensus       118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~  192 (287)
                      ..+..+..+.+...++..++  ++...+.+.++|+|+.||     |+...+.++++|||++++|......+.+.+.++.+
T Consensus        71 ~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~  148 (325)
T TIGR01187        71 KVPRAEIKPRVLEALRLVQL--EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQE  148 (325)
T ss_pred             CCCHHHHHHHHHHHHHHcCC--cchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH
Confidence            34455566677788888887  555667788999999888     77777899999999999999999999999988875


Q ss_pred             H-----HHhccChhHHHHHHHHHHHH
Q psy2281         193 L-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       193 ~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +     ++++|+...+..++|+++.+
T Consensus       149 ~~g~tiiivTHd~~e~~~~~d~i~vl  174 (325)
T TIGR01187       149 QLGITFVFVTHDQEEAMTMSDRIAIM  174 (325)
T ss_pred             hcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            4     78999999999999988755

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.65  E-value=2.6e-18  Score=143.23  Aligned_cols=178  Identities=16%  Similarity=0.193  Sum_probs=128.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+......   .++.+.+++++..++...+.
T Consensus        15 il~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~~t~   89 (232)
T cd03300          15 ALDGVSLDIKEGEF--FTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP---HKRPVNTVFQNYALFPHLTV   89 (232)
T ss_pred             eeccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh---hhcceEEEecccccCCCCcH
Confidence            45566666788988  9999999999999999999998755  67778754321111   13346666666554433344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+.......+...++..|+  ++.....+..+|+|+.|+     |+..-++++++|||+++
T Consensus        90 ~~nl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~g  160 (232)
T cd03300          90 FENIAFGLR-------LKKLPKAEIKERVAEALDLVQL--EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGA  160 (232)
T ss_pred             HHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            444433222       2233444555566777777787  555666778899999888     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     ++++|+...+...+|+++.+
T Consensus       161 LD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l  204 (232)
T cd03300         161 LDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVM  204 (232)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence            9999999999999888753     77999999998888887654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=7e-18  Score=143.67  Aligned_cols=179  Identities=11%  Similarity=0.077  Sum_probs=126.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++.. ++...+
T Consensus        24 ~l~~isl~i~~Ge~--~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~~~~~  100 (269)
T PRK13648         24 TLKDVSFNIPKGQW--TSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI-TDDNFEKLRKHIGIVFQNPDNQFVGSI  100 (269)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC-CcCCHHHHHhheeEEEeChHHhccccc
Confidence            45566666688999  9999999999999999999987654  778888653 21112334556777776653 333223


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ......++..+.+..+++..++  .+.....+.++|+|+.|+     |+...+.++++|||++
T Consensus       101 v~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~  171 (269)
T PRK13648        101 VKYDVAFGLE-------NHAVPYDEMHRRVSEALKQVDM--LERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATS  171 (269)
T ss_pred             HHHHHHhhHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            3333322221       1123445555667777887777  455556678899999888     6777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     ++++|+...+.. +++++.+
T Consensus       172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l  215 (269)
T PRK13648        172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVM  215 (269)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEE
Confidence            99999999998889888653     779999988875 7877644

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.65  E-value=6e-18  Score=140.84  Aligned_cols=174  Identities=17%  Similarity=0.168  Sum_probs=118.2

Q ss_pred             HHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEeCC
Q psy2281          28 NLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P--VIILNETDHLTREAQQALRRTMEKYITTCR--LILCANS   99 (287)
Q Consensus        28 ~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~~~   99 (287)
                      ..+++|++  ++|.||||+|||||+++|++...+    .  .|.+++.+. ...  ....+.+.+++++..  +....+.
T Consensus         7 ~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~-~~~--~~~~~~i~~~~q~~~~~~~~~~t~   81 (230)
T TIGR02770         7 LSLKRGEV--LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL-LPL--SIRGRHIATIMQNPRTAFNPLFTM   81 (230)
T ss_pred             EEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEec-hhh--hhhhheeEEEecCchhhcCcccCH
Confidence            34467888  999999999999999999999876    3  778888653 211  111234566665542  1111122


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      .+++...+.       .......+..+.+...++..++.-. +...+.+.++|+|+.|+     |+...|+++++|||++
T Consensus        82 ~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~  154 (230)
T TIGR02770        82 GNHAIETLR-------SLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTT  154 (230)
T ss_pred             HHHHHHHHH-------HcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            222222211       1111123445567778888887310 33455678899999888     6666788999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       155 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  199 (230)
T TIGR02770       155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVM  199 (230)
T ss_pred             ccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999888888888888653     77999999999988987755

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.65  E-value=4.9e-18  Score=143.79  Aligned_cols=184  Identities=16%  Similarity=0.095  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC-----C--CCHHHHHH-HHHHHHhccCC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD-----H--LTREAQQA-LRRTMEKYITT   90 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d-----~--l~~~~~~~-l~~~i~~~~~~   90 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+     .  ........ .++.+.+++++
T Consensus        20 ~il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~   97 (258)
T PRK11701         20 KGCRDVSFDLYPGEV--LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH   97 (258)
T ss_pred             eeeeeeeEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence            345566666688999  9999999999999999999987655  77788765     2  22221111 23346666666


Q ss_pred             cE--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          91 CR--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        91 ~~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      ..  +....+..+++...+..      +......+....+...++..++. .+...+.+.++|+|+.||     |+...|
T Consensus        98 ~~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LS~Gq~qrl~laral~~~p  170 (258)
T PRK11701         98 PRDGLRMQVSAGGNIGERLMA------VGARHYGDIRATAGDWLERVEID-AARIDDLPTTFSGGMQQRLQIARNLVTHP  170 (258)
T ss_pred             cccccCccccHHHHHHHHHHH------hccCcHHHHHHHHHHHHHHcCCC-hhHHhCCCccCCHHHHHHHHHHHHHhcCC
Confidence            42  22222223344332211      11112234455666777777773 124456678899999888     677778


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++++|||++++|......+.+.+.++.+.     ++++|+...+..++++++.+
T Consensus       171 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l  225 (258)
T PRK11701        171 RLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVM  225 (258)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEE
Confidence            999999999999999888888888887653     78999999999999987755

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=2.4e-18  Score=145.63  Aligned_cols=183  Identities=14%  Similarity=0.096  Sum_probs=128.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+     .  .|.+++.+.... .....+++.+.+++++..+
T Consensus        27 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  104 (258)
T PRK14268         27 ALKNVSMQIPKNSV--TALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP  104 (258)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence            45555666688998  999999999999999999998642     2  677887542211 1122345567777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++.....       ....+.++..+.+..+++..++.  +.+.....+..+|+|+.||     |+...|.++
T Consensus       105 ~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll  176 (258)
T PRK14268        105 FP-MSIYDNVAYGPR-------IHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKII  176 (258)
T ss_pred             Cc-ccHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence            44 455566543321       11234445555677777777762  1223345567899999888     666778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+-
T Consensus       177 llDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~  227 (258)
T PRK14268        177 LFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFL  227 (258)
T ss_pred             EEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEE
Confidence            999999999999998888888887543   679999999999999887553

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.65  E-value=2e-18  Score=159.16  Aligned_cols=182  Identities=12%  Similarity=0.104  Sum_probs=130.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.-.......+++.+.+++|+..++...+.
T Consensus        13 il~~vs~~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv   90 (491)
T PRK10982         13 ALDNVNLKVRPHSI--HALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSV   90 (491)
T ss_pred             eeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCH
Confidence            45566666788999  9999999999999999999987655  7778875532111122334456667776554444444


Q ss_pred             CCCCcHHHhcccceeecCC--CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281         100 MSQVIPAIRSRCLCIRIPA--PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      .+++..+..      .+..  .+.++..+.+...++..++  +....+.+.++|+|+.||     |+...|.++++|||+
T Consensus        91 ~~~l~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt  162 (491)
T PRK10982         91 MDNMWLGRY------PTKGMFVDQDKMYRDTKAIFDELDI--DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPT  162 (491)
T ss_pred             HHHhhcccc------cccccccCHHHHHHHHHHHHHHcCC--CCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence            455432211      0111  2334455667778888887  344566788999999988     667778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.+.    ++++|+.+.+..++|+++.+
T Consensus       163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l  207 (491)
T PRK10982        163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITIL  207 (491)
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            999999998888888888654    78999999999999887644

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.7e-18  Score=146.65  Aligned_cols=185  Identities=14%  Similarity=0.123  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||+++|++...+     .  .|.+|+.+.... .....+++.+.+++++..
T Consensus        18 ~~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   95 (258)
T PRK14241         18 HAVEDVNLNIEPRSV--TAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN   95 (258)
T ss_pred             eeeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence            345566666688998  999999999999999999998742     2  777887653110 011234455777776655


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++...+..+++......      ....+.++..+.+..+++..++.  +.+.....+.++|+|+.||     |+...+++
T Consensus        96 ~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  169 (258)
T PRK14241         96 PFPTMSIRDNVVAGLKL------NGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDV  169 (258)
T ss_pred             cCCCCcHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            44434444554433220      01123445556667777777762  2234456677899999888     66677899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+...+|+++.+
T Consensus       170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l  220 (258)
T PRK14241        170 LLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFF  220 (258)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            9999999999999988888888887543   77999999999999987654

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=3.9e-18  Score=144.14  Aligned_cols=184  Identities=15%  Similarity=0.118  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||++++++...+       ..|.+|+.+.... .....+++.+.+++++..
T Consensus        21 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~   98 (254)
T PRK14273         21 KALNNINIKILKNSI--TALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN   98 (254)
T ss_pred             eeecceeeEEcCCCE--EEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc
Confidence            355666777789999  999999999999999999998764       1677887542111 112334566777777765


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++. .+..+++.....-      ....+..+..+.+...++..++.  +.+.......++|+|+.|+     ++...|++
T Consensus        99 ~~~-~tv~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l  171 (254)
T PRK14273         99 PFL-MSIYDNISYGPKI------HGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNV  171 (254)
T ss_pred             ccc-CcHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            542 4555555433210      01123344556667777776652  1233445567899999888     66667899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       172 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l  222 (254)
T PRK14273        172 ILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFF  222 (254)
T ss_pred             EEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999999999998888888888543   67999999999989987755

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.65  E-value=3.7e-18  Score=144.88  Aligned_cols=188  Identities=15%  Similarity=0.114  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCH----HHHHHHHHHHHhccCCc
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTR----EAQQALRRTMEKYITTC   91 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~----~~~~~l~~~i~~~~~~~   91 (287)
                      .+++.++..+.+|++  ++|.||||+|||||+++|++...+.     .|.+++.+....    .....+++.+.+++++.
T Consensus        18 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~   95 (262)
T PRK09984         18 QALHAVDLNIHHGEM--VALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF   95 (262)
T ss_pred             EEEecceEEEcCCcE--EEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence            355666667788999  9999999999999999999988642     677887543110    11233456678888776


Q ss_pred             EEEEEeCCCCCCcHHHhcccceee--cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          92 RLILCANSMSQVIPAIRSRCLCIR--IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        92 ~~i~~~~~~~~l~~~l~sr~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      .++...+..+++..+.........  +.... ++....+...++..|+  ++...+.+..+|+|+.||     |+...|+
T Consensus        96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~  172 (262)
T PRK09984         96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFT-REQKQRALQALTRVGM--VHFAHQRVSTLSGGQQQRVAIARALMQQAK  172 (262)
T ss_pred             ccccCCcHHHHHHhhhcccccchhhhccccc-HHHHHHHHHHHHHcCC--HHHHhCCccccCHHHHHHHHHHHHHhcCCC
Confidence            655544555554332110000000  11112 2344566778888787  455566778899999888     6777789


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|||++++|......+.+.+.++.++     |+++|+...+..++++++.+
T Consensus       173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l  226 (262)
T PRK09984        173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL  226 (262)
T ss_pred             EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999999999999999999998753     77999999999999988755

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=1.2e-18  Score=148.07  Aligned_cols=186  Identities=12%  Similarity=-0.009  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++..++...+
T Consensus        25 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~~~t  101 (265)
T PRK10575         25 TLLHPLSLTFPAGKV--TGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPL-ESWSSKAFARKVAYLPQQLPAAEGMT  101 (265)
T ss_pred             EEEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEeh-hhCCHHHHhhheEEeccCCCCCCCcc
Confidence            355666677788999  9999999999999999999987654  677887652 11112234455666666644443333


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....   ................+...++..++  ++.....+.++|+|+.||     |+...++++++|||++
T Consensus       102 v~e~l~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~  176 (265)
T PRK10575        102 VRELVAIGRY---PWHGALGRFGAADREKVEEAISLVGL--KPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTS  176 (265)
T ss_pred             HHHHHHhCcc---cccccccCCCHHHHHHHHHHHHHcCC--HHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence            3344322110   00000001112234456677777777  444556677899999888     7777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|......+.+.+.++.+.     ++++|+...+..++++++.+-
T Consensus       177 ~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~  222 (265)
T PRK10575        177 ALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALR  222 (265)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999898999888653     789999999999999877553

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.6e-17  Score=156.76  Aligned_cols=184  Identities=17%  Similarity=0.146  Sum_probs=132.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcE--EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCR--LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~--~i~   95 (287)
                      +++.++..+.+|++  +.|.||||||||||+++|++.+.+.  .|.+++.+.  ++......+++.+.+++|+..  +..
T Consensus       339 ~l~~vs~~i~~Ge~--~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~  416 (623)
T PRK10261        339 AVEKVSFDLWPGET--LSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP  416 (623)
T ss_pred             EEeeeEeEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence            34555556688988  9999999999999999999988655  677777542  222222234455777777642  333


Q ss_pred             EeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      ..+..+++..++.       +.. .+..+..+.+..+++..|+. .+...+++.++|+|+.||     |+...++++++|
T Consensus       417 ~~tv~~~l~~~~~-------~~~~~~~~~~~~~~~~~L~~~gL~-~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD  488 (623)
T PRK10261        417 RQTVGDSIMEPLR-------VHGLLPGKAAAARVAWLLERVGLL-PEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD  488 (623)
T ss_pred             CCCHHHHHHHHHH-------HcCCCCHHHHHHHHHHHHHHcCCC-HHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            3334444444332       111 23445556777888888872 234567788999999998     666778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      ||++++|......+.+.+.++.++     |+++|+...+..++|+++.+..
T Consensus       489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~  539 (623)
T PRK10261        489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYL  539 (623)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence            999999999999999999998764     7899999999999999875533

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=1.4e-17  Score=143.24  Aligned_cols=183  Identities=14%  Similarity=0.077  Sum_probs=127.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC----HHHHHHHHHHHHhccCCcEE-E
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT----REAQQALRRTMEKYITTCRL-I   94 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~----~~~~~~l~~~i~~~~~~~~~-i   94 (287)
                      +.+.++..+++|++  ++|.||||+|||||+++|++.+.+.  .|.+++.+...    ......+++.+.+++++..+ +
T Consensus        26 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~  103 (289)
T PRK13645         26 ALNNTSLTFKKNKV--TCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL  103 (289)
T ss_pred             eeeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence            45566666688999  9999999999999999999987654  67778755211    01123344556666666421 1


Q ss_pred             EEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          95 LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        95 ~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      +..+..+++..+..       ......++..+.+...++..++. .+...+.+.++|+|+.||     |+...|.++++|
T Consensus       104 ~~~tv~enl~~~~~-------~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLD  175 (289)
T PRK13645        104 FQETIEKDIAFGPV-------NLGENKQEAYKKVPELLKLVQLP-EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLD  175 (289)
T ss_pred             hhhHHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCCC-hhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            12233444432211       11234445555667777777762 133456678899999888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ||++++|......+.+.+.++.+.     ++++|+.+.+..++++++.+-
T Consensus       176 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~  225 (289)
T PRK13645        176 EPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMH  225 (289)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            999999999999898889888653     789999999999999877553

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.64  E-value=1.2e-17  Score=143.16  Aligned_cols=179  Identities=13%  Similarity=0.096  Sum_probs=131.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCR-LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~   95 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++.+.+.     .|.+++.+... .....+++.+.+++++.. +++
T Consensus        22 ~l~~v~l~i~~Ge~--~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~-~~~~~~~~~ig~v~q~~~~~~~   98 (282)
T PRK13640         22 ALNDISFSIPRGSW--TALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTA-KTVWDIREKVGIVFQNPDNQFV   98 (282)
T ss_pred             ceeeEEEEEcCCCE--EEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCc-CCHHHHHhheEEEEECHHHhhc
Confidence            45555566688988  9999999999999999999987542     67888765322 112234556777777653 444


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++.....       ....+.++..+.+...++..|+  .+.....+..+|+|+.|+     |+..-|.++++||
T Consensus        99 ~~tv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE  169 (282)
T PRK13640         99 GATVGDDVAFGLE-------NRAVPRPEMIKIVRDVLADVGM--LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE  169 (282)
T ss_pred             cCCHHHHHHhhHH-------hCCCCHHHHHHHHHHHHHHCCC--hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            4555566543322       1234566666778888888887  555667788999999888     7777789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|......+.+.+.++.++     ++++|+...+. .+++++.+
T Consensus       170 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l  216 (282)
T PRK13640        170 STSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVL  216 (282)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEE
Confidence            99999999999998999888753     77899998874 68887654

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.6e-18  Score=147.23  Aligned_cols=186  Identities=13%  Similarity=0.073  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+.+.+.+++++..++...+
T Consensus        21 ~~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~~~t   97 (265)
T PRK10253         21 TVAENLTVEIPDGHF--TAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI-QHYASKEVARRIGLLAQNATTPGDIT   97 (265)
T ss_pred             EEeeecceEECCCCE--EEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEh-hhCCHHHHhhheEEeeccCcCCCCCc
Confidence            356667777789999  9999999999999999999987654  677776542 11112233455777777655443333


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++..........  +.... +.....+...++..++  ++...+.+.++|+|+.|+     |+..-|+++++|||++
T Consensus        98 v~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~  172 (265)
T PRK10253         98 VQELVARGRYPHQPL--FTRWR-KEDEEAVTKAMQATGI--THLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTT  172 (265)
T ss_pred             HHHHHHhCccccccc--ccCCC-HHHHHHHHHHHHHcCC--HHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccc
Confidence            333332211000000  11111 2334456677777777  455567788999999888     7777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|......+.+.+.++.+.     ++++|+...+..++++++.+-
T Consensus       173 gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~  218 (265)
T PRK10253        173 WLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR  218 (265)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999898999888653     779999999999999887553

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.64  E-value=3.1e-17  Score=135.68  Aligned_cols=178  Identities=15%  Similarity=0.161  Sum_probs=128.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++.+.+.  .|.+|+.+..  +.......++.+.+.+++..++...
T Consensus        20 il~~vs~~i~~G~~--~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   97 (220)
T TIGR02982        20 VLFDINLEINPGEI--VILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL   97 (220)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence            45566666688988  9999999999999999999987654  6777875431  1211223456677777776655544


Q ss_pred             CCCCCCcHHHhcccceeecC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          98 NSMSQVIPAIRSRCLCIRIP-APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      +..+++.....       +. ..+.++....+...++..|+  .+.....+.++|+|+.|+     ++..-|.++++|||
T Consensus        98 t~~~n~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP  168 (220)
T TIGR02982        98 TARQNVQMALE-------LQPNLSYQEARERARAMLEAVGL--GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP  168 (220)
T ss_pred             CHHHHHHHHHH-------hccCCCHHHHHHHHHHHHHHcCC--hhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            55555543321       22 23455666677888888887  555667788999999888     66677889999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~  211 (287)
                      ++++|......+.+.+.++.++     ++++|+.+ +..++|++.
T Consensus       169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~-~~~~~d~v~  212 (220)
T TIGR02982       169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR-ILDVADRIV  212 (220)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHhhCCEEE
Confidence            9999999988888888888753     77899986 445666554

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.64  E-value=9.6e-18  Score=149.83  Aligned_cols=196  Identities=14%  Similarity=0.082  Sum_probs=156.8

Q ss_pred             CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281          11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYI   88 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~   88 (287)
                      +++.+-+|.-.+++.++..+.+|++  ..|.|.||+|||||+++|++.+.++  .|++|+...-......+...-+..+.
T Consensus        12 ~~i~K~FggV~AL~~v~l~v~~GEV--~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~   89 (500)
T COG1129          12 RGISKSFGGVKALDGVSLTVRPGEV--HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVH   89 (500)
T ss_pred             ecceEEcCCceeeccceeEEeCceE--EEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEe
Confidence            4455556666677778888899999  9999999999999999999998877  89999865433344556667788899


Q ss_pred             CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      |+..+++..++.+|+..+   |-..-.|...+...+.+...+.++..++..+  ....+.++|.|+.|.     |+....
T Consensus        90 QEl~L~p~LsVaeNifLg---re~~~~~g~id~~~m~~~A~~~l~~lg~~~~--~~~~v~~LsiaqrQ~VeIArAl~~~a  164 (500)
T COG1129          90 QELSLVPNLSVAENIFLG---REPTRRFGLIDRKAMRRRARELLARLGLDID--PDTLVGDLSIAQRQMVEIARALSFDA  164 (500)
T ss_pred             echhccCCccHHHHhhcc---cccccCCCccCHHHHHHHHHHHHHHcCCCCC--hhhhhhhCCHHHHHHHHHHHHHhcCC
Confidence            999999988888887432   2211115567889999999999999998633  566778888886665     777777


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++++||||++++......+.+.++++.++    ++++|..+++.+++|++..+
T Consensus       165 rllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVl  218 (500)
T COG1129         165 RVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVL  218 (500)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence            889999999999988888888899999877    88999999999999998743

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.64  E-value=1.4e-18  Score=146.92  Aligned_cols=186  Identities=13%  Similarity=0.027  Sum_probs=127.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++.+.+.  .|.+++.+. .......+++.+.+++++..+.+..+.
T Consensus        16 il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~~~tv   92 (256)
T TIGR03873        16 IVDGVDVTAPPGSL--TGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDL-HGLSRRARARRVALVEQDSDTAVPLTV   92 (256)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEc-ccCCHHHHhhheEEecccCccCCCCCH
Confidence            45566666688999  9999999999999999999987654  677887542 111122334456777776544443344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++...... ..  .+......+..+.+.+.++..++  .+.....+.++|+|+.|+     |+..-++++++|||+++
T Consensus        93 ~e~l~~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  167 (256)
T TIGR03873        93 RDVVALGRIP-HR--SLWAGDSPHDAAVVDRALARTEL--SHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNH  167 (256)
T ss_pred             HHHHHhcchh-hh--hhccCCCHHHHHHHHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence            4444321100 00  01011112333466777777777  444566778899999888     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHh
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      +|......+.+.+.++.+.    ++++|+...+..++++++.+-.
T Consensus       168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~  212 (256)
T TIGR03873       168 LDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDG  212 (256)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence            9999988888888888653    7799999999999998875533

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.64  E-value=3.1e-18  Score=145.15  Aligned_cols=184  Identities=14%  Similarity=0.111  Sum_probs=128.9

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETDHLTR-EAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+++|++  ++|.||||+|||||+++|++...     +.  .|.+++.+.... .....+++.+.+++++..
T Consensus        27 ~il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~  104 (260)
T PRK10744         27 HALKNINLDIAKNQV--TAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT  104 (260)
T ss_pred             EEeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc
Confidence            345666666788999  99999999999999999999874     11  677887553211 112344566777777765


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++. .+..+++......      +...+.++..+.+...++..++.  +.....+...++|+|+.||     |+...+++
T Consensus       105 ~~~-~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  177 (260)
T PRK10744        105 PFP-MSIYDNIAFGVRL------FEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEV  177 (260)
T ss_pred             cCc-CcHHHHHhhhHhh------cCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCE
Confidence            443 3444444332210      11234455556677778877762  2233445567899999888     67777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       178 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l  228 (260)
T PRK10744        178 LLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFM  228 (260)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999999999888888888887543   77999999998888887654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.64  E-value=1.9e-18  Score=140.79  Aligned_cols=173  Identities=16%  Similarity=0.079  Sum_probs=120.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+++.+....  ...+++.+.+++++..++...+.
T Consensus        15 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~--~~~~~~~i~~~~q~~~~~~~~tv   90 (201)
T cd03231          15 LFSGLSFTLAAGEA--LQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ--RDSIARGLLYLGHAPGIKTTLSV   90 (201)
T ss_pred             eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc--cHHhhhheEEeccccccCCCcCH
Confidence            45566666788999  9999999999999999999987654  677777553211  12344456666655444333333


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++....          ...   ..+.+...++..++  ++.....+.++|+|+.|+     |+...+.++++|||+++
T Consensus        91 ~e~l~~~~----------~~~---~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~  155 (201)
T cd03231          91 LENLRFWH----------ADH---SDEQVEEALARVGL--NGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTA  155 (201)
T ss_pred             HHHHHhhc----------ccc---cHHHHHHHHHHcCC--hhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence            33332210          000   12345566666677  444556678899999888     67777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++    ++++|+...+...+++++.+
T Consensus       156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~  198 (201)
T cd03231         156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL  198 (201)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence            9999988888888887654    77999998888888776543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.64  E-value=4.6e-17  Score=128.34  Aligned_cols=192  Identities=17%  Similarity=0.048  Sum_probs=133.6

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYIT   89 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~   89 (287)
                      ++.-....+...+.++.-+..|+.  ..|.||||+||||+++++++++.++  .+.+++.+.-+. ...++.+.-.-.+|
T Consensus         6 nls~~~~Gr~ll~~vsl~~~pGev--~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~-~~~~lA~~raVlpQ   82 (259)
T COG4559           6 NLSYSLAGRRLLDGVSLDLRPGEV--LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSW-PPEELARHRAVLPQ   82 (259)
T ss_pred             eeEEEeecceeccCcceeccCCcE--EEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhC-CHHHHHHHhhhccc
Confidence            333334455667777777889999  9999999999999999999999866  777887663221 12334444455566


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      ++.+-|..++.+-+..+..      .... -...+-.++....+...++  +..+-+..-.+|||+.+|     .+..+.
T Consensus        83 ~s~laFpFtv~eVV~mGr~------p~~~g~~~~e~~~i~~~ala~~d~--~~la~R~y~~LSGGEqQRVqlARvLaQl~  154 (259)
T COG4559          83 NSSLAFPFTVQEVVQMGRI------PHRSGREPEEDERIAAQALAATDL--SGLAGRDYRTLSGGEQQRVQLARVLAQLW  154 (259)
T ss_pred             CcccccceEHHHHHHhccc------ccccCCCchhhHHHHHHHHHHcCh--hhhhccchhhcCchHHHHHHHHHHHHHcc
Confidence            7665554444443322211      1111 1223555667777777776  667777788899999988     343332


Q ss_pred             ------HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281         164 ------ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       164 ------~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                            +++++|||++++|..-.....+..++++.+    +.+-||.+....++|++.-+-
T Consensus       155 ~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~  215 (259)
T COG4559         155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLH  215 (259)
T ss_pred             CCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeee
Confidence                  366889999999988777888888888876    668899999999999988553

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.64  E-value=1.5e-18  Score=160.50  Aligned_cols=178  Identities=9%  Similarity=0.060  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+.+|++  ++|.||||+|||||+++|++.+.+.  .|.+++.+.-........++.+.+++++..++...+
T Consensus        25 ~il~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t  102 (510)
T PRK15439         25 EVLKGIDFTLHAGEV--HALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLS  102 (510)
T ss_pred             eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCc
Confidence            345566666788999  9999999999999999999988655  677787542111111111123555566544333333


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++....           ....+..+.+...++..|+  ++...+.+.++|+|+.||     |+...|.++++|||++
T Consensus       103 v~e~l~~~~-----------~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~  169 (510)
T PRK15439        103 VKENILFGL-----------PKRQASMQKMKQLLAALGC--QLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTA  169 (510)
T ss_pred             HHHHhhccc-----------ccchHHHHHHHHHHHHcCC--CccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            333332211           1122344566777888887  455567788999999988     6777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.+.    |+++|+.+.+..++++++.+
T Consensus       170 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l  213 (510)
T PRK15439        170 SLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVM  213 (510)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999999999888654    78999999999999988754

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.8e-17  Score=143.62  Aligned_cols=188  Identities=11%  Similarity=0.079  Sum_probs=130.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P--VIILNETDH--LTREAQQALR-RTMEKYITTCR   92 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~   92 (287)
                      +++.++..+.+|+.  +.|.||||||||||+++|++...+    .  .|.+|+.+.  +.......++ +.+.+++|+..
T Consensus        22 ~l~~vsl~i~~Ge~--~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~   99 (330)
T PRK15093         22 AVDRVSMTLTEGEI--RGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ   99 (330)
T ss_pred             EEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence            45666677789999  999999999999999999998752    1  678888653  2232222222 24677777654


Q ss_pred             --EEEEeCCCCCCcHHHhcccceeecCC---CCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHH
Q psy2281          93 --LILCANSMSQVIPAIRSRCLCIRIPA---PTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILM  161 (287)
Q Consensus        93 --~i~~~~~~~~l~~~l~sr~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~  161 (287)
                        +....+..+++...+...    .+..   ....+..+.+.+.++..|+.-. +....++.++|+|+.||     |+..
T Consensus       100 ~~l~p~~tv~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~  175 (330)
T PRK15093        100 SCLDPSERVGRQLMQNIPGW----TYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALAN  175 (330)
T ss_pred             hhcCccccHHHHHHHHHHhh----hccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHC
Confidence              222223333333322110    0110   1223445667788888888421 22456788999999988     7777


Q ss_pred             HHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      .|+++++|||++++|......+.+.+.++.++     |+++|+...+..++|+++.+..
T Consensus       176 ~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~  234 (330)
T PRK15093        176 QPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYC  234 (330)
T ss_pred             CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence            78999999999999999999999999998764     7899999999999998875533

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.3e-18  Score=159.05  Aligned_cols=184  Identities=10%  Similarity=0.016  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.........+++.+.+++|+..++...+.
T Consensus        19 il~~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv   96 (501)
T PRK11288         19 ALDDISFDCRAGQV--HALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTV   96 (501)
T ss_pred             EEeeeeEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCCCH
Confidence            45566666788999  9999999999999999999987654  6777775431111122334456666666544443344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..+...+    .+...+..+..+.+...++..|+  ++...+.+.++|+|+.||     |+...+.++++|||+++
T Consensus        97 ~~~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~  170 (501)
T PRK11288         97 AENLYLGQLPH----KGGIVNRRLLNYEAREQLEHLGV--DIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSS  170 (501)
T ss_pred             HHHHHhccccc----ccCCCCHHHHHHHHHHHHHHcCC--CCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCC
Confidence            44443321100    01112344556677788888887  334456788999999988     67777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.    |+++|+.+.+..++++++.+
T Consensus       171 LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l  213 (501)
T PRK11288        171 LSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVF  213 (501)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999998888888888654    78999999999998887644

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.63  E-value=2.1e-17  Score=138.18  Aligned_cols=179  Identities=16%  Similarity=0.158  Sum_probs=126.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++.+.+.  .+.+|+.+.....   ..++.+.++++...++...+.
T Consensus        15 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~---~~~~~i~~~~q~~~~~~~~t~   89 (237)
T TIGR00968        15 ALDDVNLEVPTGSL--VALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH---ARDRKIGFVFQHYALFKHLTV   89 (237)
T ss_pred             eeeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC---hhhcCEEEEecChhhccCCcH
Confidence            44455555678888  9999999999999999999987654  6778875532111   113345566666554443344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+.....+.+.+.++..++  .+...+.+..+|+|+.|+     ++...|.++++|||+++
T Consensus        90 ~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~  160 (237)
T TIGR00968        90 RDNIAFGLE-------IRKHPKAKIKARVEELLELVQL--EGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGA  160 (237)
T ss_pred             HHHHHhHHH-------hcCCCHHHHHHHHHHHHHHcCC--HhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            444432221       2233444445666777888777  455556677899999888     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +|......+.+.+.++.+.     ++++|+...+..++++++.+-
T Consensus       161 LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~  205 (237)
T TIGR00968       161 LDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS  205 (237)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEE
Confidence            9999999898889887653     779999999999999887553

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=3.4e-18  Score=143.30  Aligned_cols=176  Identities=14%  Similarity=0.059  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+.+++..++. .+.
T Consensus        18 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-~~~~~~~~~~~i~~~~q~~~~~~-~tv   93 (241)
T PRK14250         18 ILKDISVKFEGGAI--YTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDI-KTIDVIDLRRKIGMVFQQPHLFE-GTV   93 (241)
T ss_pred             eeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEh-hhcChHHhhhcEEEEecCchhch-hhH
Confidence            45566666788998  9999999999999999999987655  777887652 11112234455666666654432 233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      .+++.....       +..  .  ....+...++..++  + +...+.+.++|+|+.|+     |+...|+++++|||++
T Consensus        94 ~e~l~~~~~-------~~~--~--~~~~~~~~l~~~~l--~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~  160 (241)
T PRK14250         94 KDNIEYGPM-------LKG--E--KNVDVEYYLSIVGL--NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTS  160 (241)
T ss_pred             HHHHhcchh-------hcC--c--HHHHHHHHHHHcCC--CHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            333221110       111  1  12345566677777  4 33456678899999888     6667789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|......+.+.+.++.++     ++++|+...+..++++++.+-
T Consensus       161 ~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~  206 (241)
T PRK14250        161 ALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLN  206 (241)
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEe
Confidence            99999888888888888653     789999999999999877553

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=6e-18  Score=142.72  Aligned_cols=184  Identities=16%  Similarity=0.125  Sum_probs=128.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+       ..|.+|+.+.... .....+++.+.+++++..+
T Consensus        19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   96 (251)
T PRK14270         19 ALNDINLPIYENKI--TALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP   96 (251)
T ss_pred             eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence            45566666688999  999999999999999999998642       2678887653211 1122345567777777654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +. .+..+++.....       +... +..+....+...++..++.  +.+.......++|+|+.|+     |+...+.+
T Consensus        97 ~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  168 (251)
T PRK14270         97 FP-MSIYDNVAYGPR-------IHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDV  168 (251)
T ss_pred             CC-CcHHHHHHhHHH-------hcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            43 445555543221       1111 3344555666777777762  2233445567899999888     66667899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+.+.+..++++++.+-.
T Consensus       169 lllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~  221 (251)
T PRK14270        169 ILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM  221 (251)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEEC
Confidence            9999999999999888888888887654   7799999999999998875533

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.9e-18  Score=144.75  Aligned_cols=184  Identities=16%  Similarity=0.141  Sum_probs=127.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C-----CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G-----PVIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~-----~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...  +     ..|.+|+.+.... .....+++.+.+++++..+
T Consensus        19 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   96 (252)
T PRK14256         19 AVKDVSMDFPENSV--TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP   96 (252)
T ss_pred             EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence            45555666688998  99999999999999999999864  1     2678887553211 1122345567777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +...+..+++......      ...++..+..+.+...++..++.  +.+.....+.++|+|+.|+     |+...++++
T Consensus        97 ~~~~tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  170 (252)
T PRK14256         97 FPAMSIYDNVIAGYKL------NGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI  170 (252)
T ss_pred             CCcCcHHHHHHhHHHh------cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            5444555555433221      11133444555667777777762  1122334567799999888     666678999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++|+++.+
T Consensus       171 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l  220 (252)
T PRK14256        171 LMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFF  220 (252)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEE
Confidence            999999999999988888888888654   77999999999999987654

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=3.7e-17  Score=139.72  Aligned_cols=179  Identities=12%  Similarity=0.073  Sum_probs=131.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+++.+.-. .....+++.+.++++++. +++..+
T Consensus        22 ~l~~v~l~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~-~~~~~~~~~i~~v~q~~~~~~~~~t   98 (277)
T PRK13642         22 QLNGVSFSITKGEW--VSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA-ENVWNLRRKIGMVFQNPDNQFVGAT   98 (277)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCc-CCHHHHhcceEEEEECHHHhhccCC
Confidence            45566666688999  9999999999999999999998755  77888765322 112234556777777753 344445


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       ....+.++..+.+..+++..++  .+.....+.++|+|+.|+     |+...|.++++|||++
T Consensus        99 v~eni~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~  169 (277)
T PRK13642         99 VEDDVAFGME-------NQGIPREEMIKRVDEALLAVNM--LDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTS  169 (277)
T ss_pred             HHHHHHhhHH-------HcCCCHHHHHHHHHHHHHHCCC--HhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            5555543322       1123455666677788888777  455566678899999888     7777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.++     ++++|+...+. .+++++.+
T Consensus       170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l  213 (277)
T PRK13642        170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVM  213 (277)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEE
Confidence            99999999999999988763     77999999886 47877644

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.63  E-value=1.5e-17  Score=138.63  Aligned_cols=175  Identities=17%  Similarity=0.202  Sum_probs=121.9

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+..|++  ++|.||||+|||||+++|++...+.  .|.+++.+......   ..+.+.+++++..++...+..++
T Consensus        17 ~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~i~~~~q~~~~~~~~tv~e~   91 (232)
T PRK10771         17 RFDLTVERGER--VAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP---SRRPVSMLFQENNLFSHLTVAQN   91 (232)
T ss_pred             eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh---hhccEEEEecccccccCCcHHHH
Confidence            34555578888  9999999999999999999987654  67788754221111   12345566665544433333344


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +..+...     .+ ... +.....+...++..|+  ++...+.+..+|+|+.|+     |+...|.++++|||++++|.
T Consensus        92 l~~~~~~-----~~-~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~  162 (232)
T PRK10771         92 IGLGLNP-----GL-KLN-AAQREKLHAIARQMGI--EDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDP  162 (232)
T ss_pred             Hhccccc-----cc-CCC-HHHHHHHHHHHHHcCc--HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence            3222110     01 111 2334556777777777  556667788999999888     66777899999999999999


Q ss_pred             ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .....+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       163 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  203 (232)
T PRK10771        163 ALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVV  203 (232)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            9998888889888653     77999999999988887655

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.63  E-value=1.8e-18  Score=141.36  Aligned_cols=171  Identities=14%  Similarity=0.100  Sum_probs=116.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|++  ++|.||||+|||||+++|++...+.  .|.+++.+....  ....++.+.++++...++...+.
T Consensus        16 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~tv   91 (204)
T PRK13538         16 LFSGLSFTLNAGEL--VQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ--RDEYHQDLLYLGHQPGIKTELTA   91 (204)
T ss_pred             EEecceEEECCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc--hHHhhhheEEeCCccccCcCCcH
Confidence            45566666788998  9999999999999999999987655  677887543211  12233344445444433332333


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...   ...+.+...++..|+  .+.....+.++|+|+.|+     |+...|.++++|||+++
T Consensus        92 ~e~l~~~~~-------~~~~---~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  159 (204)
T PRK13538         92 LENLRFYQR-------LHGP---GDDEALWEALAQVGL--AGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA  159 (204)
T ss_pred             HHHHHHHHH-------hcCc---cHHHHHHHHHHHcCC--HHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            333322211       1111   123455667777777  455566788999999888     66677899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRT  208 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~  208 (287)
                      +|......+.+.+.++.+.    ++++|+...+.....
T Consensus       160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~  197 (204)
T PRK13538        160 IDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV  197 (204)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence            9999998888888887643    778999887766433

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.63  E-value=1.3e-17  Score=141.76  Aligned_cols=185  Identities=14%  Similarity=0.124  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHHHHHHHhccCCcE--EE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQALRRTMEKYITTCR--LI   94 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l~~~i~~~~~~~~--~i   94 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+..  .......+++.+.+++++..  +.
T Consensus        26 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~  103 (268)
T PRK10419         26 TVLNNVSLSLKSGET--VALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVN  103 (268)
T ss_pred             eeEeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccC
Confidence            355667777788999  9999999999999999999987654  7778875432  22222345566777777652  22


Q ss_pred             EEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          95 LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        95 ~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      ...+..+++...+.      .+...+..+....+...++..|+. .......+..+|+|+.|+     |+..-|.++++|
T Consensus       104 ~~~t~~~~l~~~~~------~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLD  176 (268)
T PRK10419        104 PRKTVREIIREPLR------HLLSLDKAERLARASEMLRAVDLD-DSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD  176 (268)
T ss_pred             CCCCHHHHHHHHHH------hhccCCHHHHHHHHHHHHHHcCCC-hhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence            22222233322221      011234445555677788887772 123455677899999888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ||++++|......+.+.+.++.++     ++++|+...+..++++++.+-
T Consensus       177 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~  226 (268)
T PRK10419        177 EAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMD  226 (268)
T ss_pred             CCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEE
Confidence            999999999888888888888753     789999999999999877553

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=5.4e-18  Score=143.18  Aligned_cols=184  Identities=14%  Similarity=0.102  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETDHLTR-EAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...     +.  .|.+|+.+.... .....+++.+.+++++..
T Consensus        20 ~il~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~   97 (253)
T PRK14242         20 QALHDISLEFEQNQV--TALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN   97 (253)
T ss_pred             eeecceeEEEeCCCE--EEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC
Confidence            355666666788999  99999999999999999999753     11  678887553211 112234556777777765


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++. .+..+++......      ......+...+.+...++..++.  +.....+.+.++|+|+.||     |+...+.+
T Consensus        98 ~~~-~tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l  170 (253)
T PRK14242         98 PFP-KSIFENVAYGLRV------NGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEV  170 (253)
T ss_pred             CCc-CcHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            443 3455555433221      01112334455666777777762  1112234467899999888     66666889


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++|+++.+
T Consensus       171 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l  221 (253)
T PRK14242        171 LLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFF  221 (253)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEE
Confidence            9999999999999988888888888533   67999999999999987755

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.62  E-value=1.7e-17  Score=156.61  Aligned_cols=186  Identities=17%  Similarity=0.143  Sum_probs=132.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC------------CCHHHHHHHH-HHHHh
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH------------LTREAQQALR-RTMEK   86 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~------------l~~~~~~~l~-~~i~~   86 (287)
                      +++.++..+.+|++  ++|+||||||||||+++|++.+.+.  .|.+++.+.            ........++ +.+.+
T Consensus        31 ~l~~is~~v~~Ge~--~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~  108 (623)
T PRK10261         31 AVRNLSFSLQRGET--LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAM  108 (623)
T ss_pred             EEEeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEEE
Confidence            45566667789999  9999999999999999999998654  566665311            1111111222 23566


Q ss_pred             ccCCc--EEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----H
Q psy2281          87 YITTC--RLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----A  158 (287)
Q Consensus        87 ~~~~~--~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----a  158 (287)
                      ++|+.  .+....+..+++..+++.      ....+..+..+.+.+.++..|+.-. ....+++.++|+|+.||     |
T Consensus       109 v~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~A  182 (623)
T PRK10261        109 IFQEPMTSLNPVFTVGEQIAESIRL------HQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMA  182 (623)
T ss_pred             EEeCchhhcCCCCCHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHH
Confidence            66654  233334455556554431      0134555667778888888888421 23456788999999998     7


Q ss_pred             HHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         159 ILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       159 l~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      +...++++++|||++++|......+.+.+.++.++     |+++|+...+..++|+++.|..
T Consensus       183 L~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~  244 (623)
T PRK10261        183 LSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ  244 (623)
T ss_pred             HhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence            77778999999999999999999999999998754     7899999999999999876543

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.62  E-value=2.1e-17  Score=139.53  Aligned_cols=184  Identities=15%  Similarity=0.057  Sum_probs=122.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC-----C--CCHHHHH-HHHHHHHhccCCc
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD-----H--LTREAQQ-ALRRTMEKYITTC   91 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d-----~--l~~~~~~-~l~~~i~~~~~~~   91 (287)
                      +.+.++..+++|++  ++|.||||+|||||++++++...+.  .|.+++.+     .  ....... ...+.+.+++++.
T Consensus        18 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~   95 (253)
T TIGR02323        18 GCRDVSFDLYPGEV--LGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP   95 (253)
T ss_pred             EeecceEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence            34566666788999  9999999999999999999987655  67788754     1  1211111 1223355555553


Q ss_pred             EE--EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          92 RL--ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        92 ~~--i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      ..  ....+..+++...+..      +...........+...++..++. .......+..+|+|+.||     |+...|.
T Consensus        96 ~~~~~~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~~LSgG~~qrv~laral~~~p~  168 (253)
T TIGR02323        96 RDGLRMRVSAGANIGERLMA------IGARHYGNIRAAAHDWLEEVEID-PTRIDDLPRAFSGGMQQRLQIARNLVTRPR  168 (253)
T ss_pred             ccccCccccHHHHHHHHHHH------hcccchHHHHHHHHHHHHHcCCC-hhhhhcCchhcCHHHHHHHHHHHHHhcCCC
Confidence            21  1111112222221110      11111223345666777777773 134556778899999888     7777789


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++++|||++++|......+.+.+.++.++     |+++|+.+.+...+++++.+-
T Consensus       169 vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~  223 (253)
T TIGR02323       169 LVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ  223 (253)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence            99999999999999999998888887653     789999999998888876543

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.62  E-value=5e-18  Score=140.67  Aligned_cols=169  Identities=14%  Similarity=0.080  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+++|++  +.|.||||+|||||++++++...+.  .|.+++.+...          .   .....+....+
T Consensus        36 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~----------~---~~~~~~~~~~t  100 (224)
T cd03220          36 WALKDVSFEVPRGER--IGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL----------L---GLGGGFNPELT  100 (224)
T ss_pred             EEEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh----------h---cccccCCCCCc
Confidence            345555556678888  9999999999999999999987655  67777654210          0   00011111122


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       +...+..+..+.+...++..++  ++.....+.++|+|+.|+     ++...|.++++|||++
T Consensus       101 v~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~  171 (224)
T cd03220         101 GRENIYLNGR-------LLGLSRKEIDEKIDEIIEFSEL--GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLA  171 (224)
T ss_pred             HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            2333322211       1223444555566677777776  555666788999999888     6666688999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l  215 (224)
T cd03220         172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVL  215 (224)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999888888888887654    77999999888887766533

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=9.2e-18  Score=141.43  Aligned_cols=185  Identities=14%  Similarity=0.100  Sum_probs=127.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTREAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~   93 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||+++|++...+       ..|.+++.+.........+++.+.+++++..+
T Consensus        17 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~   94 (249)
T PRK14253         17 QALKSINLPIPARQV--TALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP   94 (249)
T ss_pred             eeeecceEEecCCCE--EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence            356666777788999  999999999999999999998763       16778876532111122445667777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++......      ......+...+.+...++..++.  +.+.......++|+|+.|+     |+..-++++
T Consensus        95 ~~-~tv~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  167 (249)
T PRK14253         95 FP-MSIYENVAYGLRA------QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVI  167 (249)
T ss_pred             Cc-ccHHHHHHhHHHh------cCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            44 4555555332210      11112334445556666666652  1122334456799999888     666678999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+-
T Consensus       168 llDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~  218 (249)
T PRK14253        168 LMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFL  218 (249)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEE
Confidence            999999999999988888888888654   779999999999999877553

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.62  E-value=7.5e-18  Score=138.69  Aligned_cols=173  Identities=16%  Similarity=0.040  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+.-..    ..++.+.+++++..++...+
T Consensus        25 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~----~~~~~i~~~~q~~~~~~~~t   98 (214)
T PRK13543         25 PVFGPLDFHVDAGEA--LLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG----DRSRFMAYLGHLPGLKADLS   98 (214)
T ss_pred             eeeecceEEECCCCE--EEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch----hhhhceEEeecCcccccCCc
Confidence            345566666688998  9999999999999999999987654  677887543211    12233555555443332223


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       +....   ..+.+...++..++  ++.....+..+|+|+.|+     ++...+.++++|||++
T Consensus        99 ~~e~l~~~~~-------~~~~~---~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  166 (214)
T PRK13543         99 TLENLHFLCG-------LHGRR---AKQMPGSALAIVGL--AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYA  166 (214)
T ss_pred             HHHHHHHHHH-------hcCCc---HHHHHHHHHHHcCC--hhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            3333322111       11111   22344556666676  455566778999999888     6666788999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      ++|......+.+.+.++.+.    ++++|+...+..++++++
T Consensus       167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~  208 (214)
T PRK13543        167 NLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRML  208 (214)
T ss_pred             cCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEE
Confidence            99999988888888887655    789999999999888754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.62  E-value=1.8e-17  Score=154.12  Aligned_cols=185  Identities=16%  Similarity=0.172  Sum_probs=131.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCC--CCHHHHHHHHHHHHhccCCcE--EEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDH--LTREAQQALRRTMEKYITTCR--LILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~--~i~~   96 (287)
                      +.+.++..+.+|++  ++|.||||||||||++++++..... .|.+++.+.  .+......+++.+.+++|+..  ++..
T Consensus       301 il~~isl~i~~Ge~--~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~  378 (529)
T PRK15134        301 VVKNISFTLRPGET--LGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR  378 (529)
T ss_pred             eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence            45666666789999  9999999999999999999987422 677887542  122212223445677776642  3333


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      .+..+++..+...+     -...+..+..+.+..+++..++  + +...+.+.++|+|+.||     |+...|.++++||
T Consensus       379 ~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE  451 (529)
T PRK15134        379 LNVLQIIEEGLRVH-----QPTLSAAQREQQVIAVMEEVGL--DPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE  451 (529)
T ss_pred             ccHHHHHHHHHHhc-----cccCChHHHHHHHHHHHHHcCC--CHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeC
Confidence            34445554433210     0012334455667778888887  4 34567788999999998     6666789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      |++++|......+.+.+.++.++     |+++|+...+..++|+++.+-.
T Consensus       452 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~  501 (529)
T PRK15134        452 PTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ  501 (529)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence            99999999999999999988753     7799999999999998875543

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.62  E-value=2.9e-17  Score=137.16  Aligned_cols=177  Identities=13%  Similarity=0.176  Sum_probs=125.8

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      .+.++..+.+|+.  ++|.||||+|||||+++|++...+.  -|.+++.+......   .++.+.+++++..++...+..
T Consensus        15 l~~is~~i~~Ge~--~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~---~~~~i~~~~q~~~~~~~~t~~   89 (235)
T cd03299          15 LKNVSLEVERGDY--FVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP---EKRDISYVPQNYALFPHMTVY   89 (235)
T ss_pred             eeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh---hHcCEEEEeecCccCCCccHH
Confidence            4445555578888  9999999999999999999987655  67788754321111   123455566555444334444


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++.....       ....+..+..+.+...++..++  .+...+.+.++|+|+.||     |+...+.++++|||++++
T Consensus        90 e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gL  160 (235)
T cd03299          90 KNIAYGLK-------KRKVDKKEIERKVLEIAEMLGI--DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSAL  160 (235)
T ss_pred             HHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccC
Confidence            44433221       1122344555666777887777  566667788999999888     666678899999999999


Q ss_pred             cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |......+.+.+.++..+     ++++|+...+...+++++.+
T Consensus       161 D~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l  203 (235)
T cd03299         161 DVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIM  203 (235)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            999999888888888653     77999999998888887655

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=7.8e-18  Score=142.76  Aligned_cols=185  Identities=15%  Similarity=0.075  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCC-CHHHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHL-TREAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+++|+.  ++|.||||+|||||++++++...+       ..|.+++.+.- .......+++.+.+++++..
T Consensus        21 ~il~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~   98 (261)
T PRK14258         21 KILEGVSMEIYQSKV--TAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN   98 (261)
T ss_pred             eEeeceEEEEcCCcE--EEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc
Confidence            345666666789999  999999999999999999998764       26777775521 11112234555666666655


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      ++. .+..+++.....       .... +..+..+.+...++..++.  +.+...+.+.++|+|+.|+     ++..-+.
T Consensus        99 l~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~  170 (261)
T PRK14258         99 LFP-MSVYDNVAYGVK-------IVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPK  170 (261)
T ss_pred             cCc-ccHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            443 444455433221       1111 3334445667777777762  2233445567899999888     6666789


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      ++++|||++++|......+.+.+.++...     ++++|+...+..++++++.+-.
T Consensus       171 vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~  226 (261)
T PRK14258        171 VLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG  226 (261)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence            99999999999999988888888887543     7799999999999998876644

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.62  E-value=8.7e-18  Score=155.61  Aligned_cols=189  Identities=13%  Similarity=0.074  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc---EEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC---RLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~---~~i~~   96 (287)
                      +.+.++..+.+|++  +.|.||||||||||+++|++...+.  -|.+++.+.-.......+++.+.+++|+.   .++..
T Consensus       278 ~l~~isl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~  355 (510)
T PRK09700        278 KVRDISFSVCRGEI--LGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPN  355 (510)
T ss_pred             cccceeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCC
Confidence            44555555688999  9999999999999999999987654  67787754211111123344567776652   23332


Q ss_pred             eCCCCCCcHHHhcccc-e-eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          97 ANSMSQVIPAIRSRCL-C-IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~-~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+..+++..+...+.. . ..+...........+.++++..++. .+...+.+.++|+|+.||     |+...|.++++|
T Consensus       356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLD  434 (510)
T PRK09700        356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK-CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFD  434 (510)
T ss_pred             CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC-CCCccCccccCChHHHHHHHHHHHHhcCCCEEEEC
Confidence            3344444322110000 0 0011112223335567778877772 134567788999999998     666668999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.    |+++|+.+.+..++|+++.+
T Consensus       435 EPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l  482 (510)
T PRK09700        435 EPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVF  482 (510)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence            999999999999999999888654    78999999999999987755

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.61  E-value=5.6e-17  Score=130.94  Aligned_cols=186  Identities=16%  Similarity=0.089  Sum_probs=130.6

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EE
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR--LI   94 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i   94 (287)
                      .+.++..++..++.|+.  ..|+||||+|||||++.+++...+.  .+.+=+...-..+....+++.++.++....  +.
T Consensus        43 gk~iL~~isW~V~~ge~--W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~  120 (257)
T COG1119          43 GKKILGDLSWQVNPGEH--WAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR  120 (257)
T ss_pred             CEeeccccceeecCCCc--EEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence            44567788888899988  9999999999999999999998774  222222222222333678888887764432  22


Q ss_pred             EEeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          95 LCANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        95 ~~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      ...++.+-+..+.-.   .+-+.. ...++....+..+++..|+  +..+.+....+|.|+.|+     |+...|.++++
T Consensus       121 ~~~~v~dvVlSg~~~---siG~y~~~~~~~~~~~a~~lle~~g~--~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiL  195 (257)
T COG1119         121 VRETVRDVVLSGFFA---SIGIYQEDLTAEDLAAAQWLLELLGA--KHLADRPFGSLSQGEQRRVLIARALVKDPELLIL  195 (257)
T ss_pred             cccccceeeeecccc---cccccccCCCHHHHHHHHHHHHHcch--hhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEe
Confidence            222222333332211   112222 3345666777888888887  566778889999999988     88888999999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH------HHhccChhHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL------IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~------i~~~~~~~~~~~~~~~~~  211 (287)
                      |||++++|....+...+.+.++...      ++++|..+++....+++.
T Consensus       196 DEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l  244 (257)
T COG1119         196 DEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL  244 (257)
T ss_pred             cCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence            9999999999988888888887755      779999888876655443

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.61  E-value=4.8e-18  Score=157.03  Aligned_cols=185  Identities=10%  Similarity=0.004  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--P--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++...+  .  .|.+++.+.-........++.+.+++|+..++...
T Consensus        16 il~~isl~i~~Ge~--~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~   93 (500)
T TIGR02633        16 ALDGIDLEVRPGEC--VGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL   93 (500)
T ss_pred             eecceEEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence            45666667788999  999999999999999999998764  2  67777754321111112233466666665444433


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      +..+++..+...+.   .....+.++....+...++..++.  +.. .+.+.++|+|+.||     |+...|+++++|||
T Consensus        94 tv~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEP  168 (500)
T TIGR02633        94 SVAENIFLGNEITL---PGGRMAYNAMYLRAKNLLRELQLD--ADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEP  168 (500)
T ss_pred             cHHHHHHhhccccc---cccccCHHHHHHHHHHHHHHcCCC--CCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence            44444432211000   000123345556677788888873  322 34578999999998     67777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.+.    ++++|+.+.+..++|+++.+
T Consensus       169 t~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l  214 (500)
T TIGR02633       169 SSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVI  214 (500)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence            9999999999999999888654    78999999999999988755

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.61  E-value=1.1e-17  Score=138.88  Aligned_cols=178  Identities=15%  Similarity=0.149  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+..... ...+++.+.+++++..++. .+
T Consensus        21 ~il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~~i~~~~q~~~l~~-~t   96 (225)
T PRK10247         21 KILNNISFSLRAGEF--KLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLK-PEIYRQQVSYCAQTPTLFG-DT   96 (225)
T ss_pred             eeeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCC-HHHHHhccEEEeccccccc-cc
Confidence            355666666788999  9999999999999999999987654  6777875421111 1224456777777654432 24


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....       +.....  ....+...++..++. +......+.++|+|+.|+     |+...+.++++|||++
T Consensus        97 v~enl~~~~~-------~~~~~~--~~~~~~~~l~~~~l~-~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~  166 (225)
T PRK10247         97 VYDNLIFPWQ-------IRNQQP--DPAIFLDDLERFALP-DTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS  166 (225)
T ss_pred             HHHHHHhHHh-------hcCCCh--HHHHHHHHHHHcCCC-hHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            4444432211       111111  123455677777772 123456678899999888     7777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.+.     ++++|+...+. .+|+++.+
T Consensus       167 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l  210 (225)
T PRK10247        167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITL  210 (225)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEE
Confidence            99999988888888888653     67899988875 47776544

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=1.5e-17  Score=140.40  Aligned_cols=186  Identities=12%  Similarity=0.084  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-------CCEEEEeCCCCCC-HHHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-------GPVIILNETDHLT-REAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-------~~~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||+++|++...       ...|.+|+.+... .......++.+.+++++..
T Consensus        18 ~~l~~~sl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~   95 (251)
T PRK14251         18 EALHGISLDFEEKEL--TALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT   95 (251)
T ss_pred             eeeeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence            345566666788998  99999999999999999999874       1167788865321 1122334555777777655


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++. .+..+++.....-      ......+...+.+...++..++.  ..........++|+|+.|+     |+..-+++
T Consensus        96 ~~~-~tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~l  168 (251)
T PRK14251         96 PFP-FSVYDNVAYGLKI------AGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKV  168 (251)
T ss_pred             cCC-CcHHHHHHHHHHH------cCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            443 3445555433210      11112333445566667776762  1123345677899999888     67777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      +++|||++++|+.....+.+.+.++.+.   ++++|+...+..++++++.+-.
T Consensus       169 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~  221 (251)
T PRK14251        169 VLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMN  221 (251)
T ss_pred             EEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEEC
Confidence            9999999999999888888888887543   7799999999999998875533

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.61  E-value=1.6e-17  Score=153.61  Aligned_cols=187  Identities=14%  Similarity=0.144  Sum_probs=127.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE---EEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-P--VIILNETDHLTREAQQALRRTMEKYITTCR---LIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~---~i~   95 (287)
                      +.+.++..+++|++  +.|.||||+|||||+++|++...+ .  .|.+++.+.-........++.+.+++|+..   ++.
T Consensus       277 vl~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  354 (506)
T PRK13549        277 RVDDVSFSLRRGEI--LGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVP  354 (506)
T ss_pred             cccceeeEEcCCcE--EEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcC
Confidence            45566666689999  999999999999999999998763 3  777877542111111223334666666531   332


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++..+...+..  .+...+..+..+.+..+++..++. ++...+.+.++|+|+.||     |+...|+++++||
T Consensus       355 ~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDE  431 (506)
T PRK13549        355 VMGVGKNITLAALDRFT--GGSRIDDAAELKTILESIQRLKVK-TASPELAIARLSGGNQQKAVLAKCLLLNPKILILDE  431 (506)
T ss_pred             CCCHHHHhhhhhhhhhc--cCcccChHHHHHHHHHHHHhcCcc-CCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence            23444444332211100  001123334455677788888872 123567788999999998     6666789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|......+.+.+.++.+.    |+++|+...+..++|+++.+
T Consensus       432 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l  478 (506)
T PRK13549        432 PTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVM  478 (506)
T ss_pred             CCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            99999999999999999888764    78999999999999987754

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.61  E-value=3.6e-17  Score=150.80  Aligned_cols=181  Identities=13%  Similarity=0.039  Sum_probs=123.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||++++++.+.+.  .|.+++.+..... ...+++.+.+++++..+.+...
T Consensus        17 ~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~-~~~~~~~i~~~~q~~~~~~~~~   93 (490)
T PRK10938         17 KTLQLPSLTLNAGDS--WAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS-FEQLQKLVSDEWQRNNTDMLSP   93 (490)
T ss_pred             eecccceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCC-HHHHHHHhceeccCcchhhccc
Confidence            456677777789999  9999999999999999999987654  5666654322111 1223455777766543211111


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ...........   .+.+   . .+..+.+...++..|+  ++...+.+.++|+|+.||     |+...|.++++|||++
T Consensus        94 ~~~~~~~~~~~---~~~~---~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~  164 (490)
T PRK10938         94 GEDDTGRTTAE---IIQD---E-VKDPARCEQLAQQFGI--TALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFD  164 (490)
T ss_pred             chhhccccHHH---hccc---c-hhHHHHHHHHHHHcCC--HhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence            00000001110   0001   1 1223456677777777  555667788999999998     6777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.+.    |+++|+.+.+..++|+++.+
T Consensus       165 ~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l  208 (490)
T PRK10938        165 GLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVL  208 (490)
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence            99999999999999988654    77999999999999987754

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.61  E-value=4.1e-17  Score=138.77  Aligned_cols=184  Identities=17%  Similarity=0.131  Sum_probs=126.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +++.++..+++|++  ++|.||||+|||||+++|++...+     .  .|.+|+.+.... .....+++.+.++++...+
T Consensus        34 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  111 (267)
T PRK14235         34 ALFDVDLDIPEKTV--TAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP  111 (267)
T ss_pred             EEEEEEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence            34555556688988  999999999999999999998753     2  778887553211 1122345567777776654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++......+    .+. .+..+....+...++..++.  +.....+...++|+|+.||     |+..-|.++
T Consensus       112 ~~-~tv~enl~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~ll  185 (267)
T PRK14235        112 FP-KSIYENVAYGPRIH----GLA-RSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVI  185 (267)
T ss_pred             CC-CcHHHHHHHHHHhc----ccc-cchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            43 24445554332111    010 13344555667777777772  0112234567899999888     777778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       186 lLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l  235 (267)
T PRK14235        186 LMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFF  235 (267)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEE
Confidence            999999999999988888888887543   77999999999988887654

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.61  E-value=9.4e-18  Score=142.72  Aligned_cols=185  Identities=16%  Similarity=0.085  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------C-EEEEeCCCCCCHHHHHHHHHHHHhccCC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------P-VIILNETDHLTREAQQALRRTMEKYITT   90 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------~-~i~ide~d~l~~~~~~~l~~~i~~~~~~   90 (287)
                      .+.+.++..+..|+.  +.|.||||+|||||+++|++.+.+         . .|.+++.+.. ......+++.+.+++++
T Consensus        15 ~il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~-~~~~~~~~~~~~~v~q~   91 (272)
T PRK13547         15 AILRDLSLRIEPGRV--TALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLA-AIDAPRLARLRAVLPQA   91 (272)
T ss_pred             eEEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcc-cCCHHHHHhhcEEeccc
Confidence            345566666788998  999999999999999999998753         2 6778875431 11122344456666766


Q ss_pred             cEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHH-----
Q psy2281          91 CRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AIL-----  160 (287)
Q Consensus        91 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~-----  160 (287)
                      ..+++..+..+++......+..  ...... .+..+.+...++..++  ++...+.+.++|+|+.|+     |+.     
T Consensus        92 ~~~~~~~tv~e~l~~~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~qrv~laral~~~~~~  166 (272)
T PRK13547         92 AQPAFAFSAREIVLLGRYPHAR--RAGALT-HRDGEIAWQALALAGA--TALVGRDVTTLSGGELARVQFARVLAQLWPP  166 (272)
T ss_pred             CCCCCCCcHHHHHhhccccccc--ccccCC-HHHHHHHHHHHHHcCc--HhhhcCCcccCCHHHHHHHHHHHHHhccccc
Confidence            5433333444444322110000  001112 2334556677777777  444556678899999888     444     


Q ss_pred             ----HHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         161 ----MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       161 ----~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                          ..+.++++|||++++|......+.+.+.++.+.     ++++|+.+.+..++++++.+
T Consensus       167 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l  228 (272)
T PRK13547        167 HDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAML  228 (272)
T ss_pred             cccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence                258899999999999999999999999888654     77999999999889987754

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=2.9e-18  Score=146.93  Aligned_cols=179  Identities=13%  Similarity=0.113  Sum_probs=123.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +++.++..+.+|++  ++|.||||+|||||+++|++...+     .  -|.+++.+.... .....+++.+.+++++..+
T Consensus        54 il~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l  131 (285)
T PRK14254         54 ALDDVSMDIPENQV--TAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNP  131 (285)
T ss_pred             eEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence            45566666688999  999999999999999999998642     2  677777542110 0112344556777776654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++.....       +..... +....+...++..++.  +.+...+.+.++|+|+.||     |+...+.++
T Consensus       132 ~~-~tv~enl~~~~~-------~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lL  202 (285)
T PRK14254        132 FP-KSIYDNVAYGLK-------IQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVI  202 (285)
T ss_pred             Cc-CCHHHHHHHHHH-------HcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            43 244444433321       111222 3445566777777762  1233455677899999888     666678999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~  211 (287)
                      ++|||++++|......+.+.+.++.+.   |+++|+...+..++++++
T Consensus       203 LLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~  250 (285)
T PRK14254        203 LMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTA  250 (285)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence            999999999999888888888888654   779999999999888754

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.61  E-value=2.4e-17  Score=138.71  Aligned_cols=178  Identities=16%  Similarity=0.189  Sum_probs=120.6

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      ++.++..+..|++  +.|.||||+|||||++++++..... .|.+|+.+.- ......+++.+.+++++..+++..+..+
T Consensus        12 l~~vsl~i~~Gei--~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~-~~~~~~~~~~i~~v~q~~~~~~~~tv~~   88 (248)
T PRK03695         12 LGPLSAEVRAGEI--LHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLE-AWSAAELARHRAYLSQQQTPPFAMPVFQ   88 (248)
T ss_pred             ecceEEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecC-cCCHHHHhhheEEecccCccCCCccHHH
Confidence            3444555578888  9999999999999999999976422 6778875421 1112223344666666554433333333


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHH-------HHHHhhcC
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILM-------CEASKVQQ  169 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~-------l~~~~~~d  169 (287)
                      ++....        ....+.++..+.+...++..++  .+...+.+..+|+|+.|+     |+..       .++++++|
T Consensus        89 nl~~~~--------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD  158 (248)
T PRK03695         89 YLTLHQ--------PDKTRTEAVASALNEVAEALGL--DDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD  158 (248)
T ss_pred             HHHhcC--------ccCCCcHHHHHHHHHHHHHcCC--HhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence            322110        0112233445566777877777  455556778899999888     3332       23899999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.++    ++++|+...+..++|+++.+
T Consensus       159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l  206 (248)
T PRK03695        159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLL  206 (248)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            999999999988888888888653    77999999999999987754

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=4.1e-14  Score=119.91  Aligned_cols=144  Identities=22%  Similarity=0.313  Sum_probs=107.9

Q ss_pred             ccCCCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q psy2281           7 KYRPNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP-----------   62 (287)
Q Consensus         7 k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~-----------   62 (287)
                      +-.-.+++++-|-++.++.++..++           -|--|+  ++||||||||||-|++|+|+.....           
T Consensus       144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq  223 (406)
T COG1222         144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ  223 (406)
T ss_pred             cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence            3334578888888888888888872           243333  9999999999999999999887655           


Q ss_pred             -----------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhc-----cCCcEEEEEeCCCCCC
Q psy2281          63 -----------------------VIILNETDHLT-----------REAQQALRRTMEKY-----ITTCRLILCANSMSQV  103 (287)
Q Consensus        63 -----------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~-----~~~~~~i~~~~~~~~l  103 (287)
                                             +|||||+|.+.           .+.|..+...+...     ..+..+|.++|..+-+
T Consensus       224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~L  303 (406)
T COG1222         224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDIL  303 (406)
T ss_pred             HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcccc
Confidence                                   99999999863           23465555555442     3467899999999999


Q ss_pred             cHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Q psy2281         104 IPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS  151 (287)
Q Consensus       104 ~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s  151 (287)
                      .|++..  |+ ..+.|+.|+.+...++++-...+.++. ++-.++.++..+
T Consensus       304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~  353 (406)
T COG1222         304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLT  353 (406)
T ss_pred             ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhc
Confidence            999886  44 469999999999999999888887763 222355566543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.61  E-value=8.5e-17  Score=149.37  Aligned_cols=182  Identities=16%  Similarity=0.126  Sum_probs=127.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEe-CCC--CCC---HHHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILN-ETD--HLT---REAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~id-e~d--~l~---~~~~~~l~~~i~~~~~~~~~   93 (287)
                      +++.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.++ +-+  .++   ......+++.+.+++|+..+
T Consensus       299 il~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l  376 (520)
T TIGR03269       299 AVDNVSLEVKEGEI--FGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL  376 (520)
T ss_pred             EEeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence            44556666688999  9999999999999999999987654  66674 321  111   11112334457777776554


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI---PPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +...+..+++..++.       + ..+.++....+...++..++.-   .+...+.+.++|+|+.||     |+...|.+
T Consensus       377 ~~~~tv~e~l~~~~~-------~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~l  448 (520)
T TIGR03269       377 YPHRTVLDNLTEAIG-------L-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRI  448 (520)
T ss_pred             CCCCcHHHHHHHHHH-------c-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            443344444433221       1 1223334456677788888741   123567788999999998     66667899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.++     |+++|+...+..++++++.+
T Consensus       449 LllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l  501 (520)
T TIGR03269       449 VILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALM  501 (520)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999999999999999999888654     78999999999999987754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.61  E-value=9.1e-18  Score=141.55  Aligned_cols=183  Identities=14%  Similarity=0.109  Sum_probs=126.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+       ..|.+|+.+.... .....+++.+.+++++..+
T Consensus        18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   95 (250)
T PRK14240         18 ALKKINLDIEENQV--TALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP   95 (250)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence            45566666688999  999999999999999999997531       2678887653211 1123345567777776554


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++......      ....+.++..+.+...++..++.  +.+...+.+.++|+|+.||     |+...++++
T Consensus        96 ~~-~t~~~ni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  168 (250)
T PRK14240         96 FP-MSIYDNVAYGPRT------HGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVL  168 (250)
T ss_pred             Cc-ccHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            43 4444555432210      11123344556667777776652  1223344567799999888     777778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+.+.+...+++++.+
T Consensus       169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l  218 (250)
T PRK14240        169 LMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFF  218 (250)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEE
Confidence            999999999999988888888887533   77999999999988887655

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.61  E-value=1.1e-17  Score=142.60  Aligned_cols=182  Identities=12%  Similarity=0.135  Sum_probs=125.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++.+.     +.  .|.+++.+.... .....+++.+.+++++..+
T Consensus        39 il~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  116 (271)
T PRK14238         39 ALKNINLDIHENEV--TAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP  116 (271)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence            44555556688998  99999999999999999999875     22  677887653211 1123345667778877665


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGL--TIPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +. .+..+++..+..       .... +.......+...++..++  .+.+.....+.++|+|+.||     ++..-+++
T Consensus       117 ~~-~tv~eni~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~l  188 (271)
T PRK14238        117 FP-KSIYDNVTYGPK-------IHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDV  188 (271)
T ss_pred             cc-ccHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCE
Confidence            54 355555544322       1111 222334455555555443  12333445567899999888     66667899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       189 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l  239 (271)
T PRK14238        189 ILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFF  239 (271)
T ss_pred             EEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEE
Confidence            9999999999999998888888887643   77999999999999987654

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.61  E-value=1.8e-17  Score=137.68  Aligned_cols=179  Identities=15%  Similarity=0.142  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---GP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+++|++  ++|.||||+|||||+++|++.+.   +.  .|++++.+. ..   ...++.+.+.+++..++..
T Consensus        22 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~-~~---~~~~~~i~~~~q~~~~~~~   95 (226)
T cd03234          22 ILNDVSLHVESGQV--MAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR-KP---DQFQKCVAYVRQDDILLPG   95 (226)
T ss_pred             cccCceEEEcCCeE--EEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC-Ch---HHhcccEEEeCCCCccCcC
Confidence            44555556688988  99999999999999999999886   43  677887653 21   2334556777776655544


Q ss_pred             eCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHH-HHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTN-ICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+..+++.....-.     ... ............ .++..++  ++...+.+.++|+|+.|+     ++...|+++++|
T Consensus        96 ~tv~enl~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~illlD  168 (226)
T cd03234          96 LTVRETLTYTAILR-----LPRKSSDAIRKKRVEDVLLRDLAL--TRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILD  168 (226)
T ss_pred             CcHHHHHHHHHHhh-----cccccchHHHHHHHHHHHHHhhcc--hhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            45555554322100     111 111122223333 5666665  444445677899999888     666678999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH----HHhccCh-hHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSP-KKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~-~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.    ++++|+. ..+...+|+++.+
T Consensus       169 EP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l  217 (226)
T cd03234         169 EPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLL  217 (226)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEE
Confidence            999999999998888888887653    6788997 5788888876543

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.61  E-value=7.2e-17  Score=165.27  Aligned_cols=176  Identities=17%  Similarity=0.085  Sum_probs=132.2

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|++  +.|.||||+||||++++|++...++  .|.+++.+... . ....++.+++.+|...+....+..+
T Consensus      1956 ~~ISf~I~~GEi--~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~-~~~~r~~IGy~pQ~~~L~~~LTv~E 2031 (2272)
T TIGR01257      1956 DRLCVGVRPGEC--FGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-N-ISDVHQNMGYCPQFDAIDDLLTGRE 2031 (2272)
T ss_pred             EeeEEEEcCCcE--EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-h-HHHHhhhEEEEeccccCCCCCCHHH
Confidence            333334467888  9999999999999999999998766  77888766322 2 2334566787777765554445555


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                      ++....+       +...+.++..+.+...++..++  .+...+.+.++|+|+.||     |+...|+++++|||++++|
T Consensus      2032 ~L~l~a~-------l~g~~~~~~~~~v~~lLe~lgL--~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLD 2102 (2272)
T TIGR01257      2032 HLYLYAR-------LRGVPAEEIEKVANWSIQSLGL--SLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102 (2272)
T ss_pred             HHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--HHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCC
Confidence            5433222       2334455666677788888887  566677789999999999     5666689999999999999


Q ss_pred             CccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         177 QIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      +..+..+.+.+.++.++    |+++|+.++++.+++++.-
T Consensus      2103 p~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~I 2142 (2272)
T TIGR01257      2103 PQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAI 2142 (2272)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence            99999999999988654    7899999999999998763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=1.2e-17  Score=141.51  Aligned_cols=184  Identities=14%  Similarity=0.066  Sum_probs=127.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+       ..|.+|+.+.... .....+++.+.+++++..+
T Consensus        22 il~~isl~i~~Ge~--~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l   99 (259)
T PRK14260         22 AIEGISMDIYRNKV--TAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP   99 (259)
T ss_pred             eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence            45556666688999  999999999999999999998652       2678887543211 1123445567777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++......+      ...+..+..+.+...++..++.  +.+.......++|+|+.|+     |+...+.++
T Consensus       100 ~~-~tv~enl~~~~~~~------~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  172 (259)
T PRK14260        100 FP-MSIYENVAYGVRIS------AKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVL  172 (259)
T ss_pred             CC-ccHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            44 45555554332211      1123344455666677776762  1223345567899998888     666678899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+.+.+..++|+++.+.
T Consensus       173 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~  223 (259)
T PRK14260        173 LMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFS  223 (259)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEe
Confidence            999999999999888888888887544   779999999999999877553

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.61  E-value=8e-17  Score=133.46  Aligned_cols=173  Identities=16%  Similarity=0.119  Sum_probs=120.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||++++++.+.+.  .|.+++.+. ...   . .+.+.+.+++..++...+.
T Consensus        15 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~-~~~---~-~~~~~~~~q~~~~~~~~t~   87 (223)
T TIGR03740        15 AVNNISLTVPKNSV--YGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW-TRK---D-LHKIGSLIESPPLYENLTA   87 (223)
T ss_pred             EEeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEec-ccc---c-cccEEEEcCCCCccccCCH
Confidence            34455555678888  9999999999999999999987654  677777542 211   0 1234455555443333333


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+.    ..+...++..|+  ++.....+.++|+|+.|+     |+...+.++++|||+++
T Consensus        88 ~~~~~~~~~-------~~~~~~----~~~~~~l~~~~l--~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~  154 (223)
T TIGR03740        88 RENLKVHTT-------LLGLPD----SRIDEVLNIVDL--TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNG  154 (223)
T ss_pred             HHHHHHHHH-------HcCCCH----HHHHHHHHHcCC--cHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccC
Confidence            344322211       112222    234556666677  566677788999999888     66666899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +|......+.+.+.++.+.    ++++|+...+...+++++.+-
T Consensus       155 LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  198 (223)
T TIGR03740       155 LDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIIS  198 (223)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEe
Confidence            9999999999999888653    779999999999999877553

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=1.4e-17  Score=142.15  Aligned_cols=184  Identities=14%  Similarity=0.110  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTREAQQALRRTMEKYITTCRLI   94 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i   94 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+     .  -|.+++.+.........+++.+.+++++..++
T Consensus        36 il~~vs~~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~  113 (276)
T PRK14271         36 VLDQVSMGFPARAV--TSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF  113 (276)
T ss_pred             EeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence            45566666688998  999999999999999999998763     1  67788754322111233456677777776544


Q ss_pred             EEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281          95 LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI--PPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus        95 ~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      . .+..+++......      ....+..+....+...++..++.-  .+...+.+.++|+|+.||     ++...|.+++
T Consensus       114 ~-~tv~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lll  186 (276)
T PRK14271        114 P-MSIMDNVLAGVRA------HKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLL  186 (276)
T ss_pred             C-ccHHHHHHHHHHh------ccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4 4555554433210      111344555556666777777631  112334567899999888     6666789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+-
T Consensus       187 LDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~  236 (276)
T PRK14271        187 LDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFF  236 (276)
T ss_pred             EcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            99999999999888888888887554   779999999999999887553

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.60  E-value=3.7e-14  Score=121.26  Aligned_cols=153  Identities=20%  Similarity=0.227  Sum_probs=110.5

Q ss_pred             CccCcHHHHHHHHHHH----------hcCC-----CCcEEEeCCCCCcHHHHHHHHHHHhCC------------------
Q psy2281          15 KLDFHCKQANHLRNLL----------KEGD-----FPHLLFYGPSGAGKKTRIMALLKELYG------------------   61 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~----------~~g~-----~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------   61 (287)
                      +++|...+++.+..+.          +.|-     ..|++|+|||||||||+++++++.+..                  
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~  102 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV  102 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence            5788887777766543          1121     125999999999999999888766521                  


Q ss_pred             --------------------CEEEEeCCCCC---------CHHHHHHHHHHHHhccCCcEEEEEeCCC--C---CCcHHH
Q psy2281          62 --------------------PVIILNETDHL---------TREAQQALRRTMEKYITTCRLILCANSM--S---QVIPAI  107 (287)
Q Consensus        62 --------------------~~i~ide~d~l---------~~~~~~~l~~~i~~~~~~~~~i~~~~~~--~---~l~~~l  107 (287)
                                          .+++|||++.+         ..+.++.|.+.|+....+.++|++++..  +   .+.+++
T Consensus       103 ~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L  182 (284)
T TIGR02880       103 GQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGF  182 (284)
T ss_pred             HhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHH
Confidence                                08999999976         2345678888888665555555544322  1   246899


Q ss_pred             hcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q psy2281         108 RSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ--------SDRNLRRAILMCEASKV  167 (287)
Q Consensus       108 ~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~G~~r~al~~l~~~~~  167 (287)
                      ++||. .+.|++++.+++..++...+++.+..+++++.+.+.++        ..|+.|.+-+.++.++.
T Consensus       183 ~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~  251 (284)
T TIGR02880       183 SSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL  251 (284)
T ss_pred             HhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence            99995 69999999999999999999998888888887777654        24667776666665543

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=9.1e-18  Score=142.25  Aligned_cols=183  Identities=14%  Similarity=0.111  Sum_probs=125.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCC-HHHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLT-REAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+       ..|.+|+.+... ......+++.+.+++++..+
T Consensus        27 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  104 (259)
T PRK14274         27 ALKNINLSIPENEV--TAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP  104 (259)
T ss_pred             eEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence            45555556688998  999999999999999999998751       267788765321 11123345567777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +.. +..+++......      +...+.++....+...++..++.  +.+.......++|+|+.|+     ++...++++
T Consensus       105 ~~~-tv~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~ll  177 (259)
T PRK14274        105 FPQ-SIFDNVAYGPRI------HGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVL  177 (259)
T ss_pred             ccc-CHHHHHHhHHHh------cCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            442 444554322110      11123345555666677776762  0122334566799999888     666778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       178 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l  227 (259)
T PRK14274        178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFF  227 (259)
T ss_pred             EEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEE
Confidence            999999999999988888888887543   77999999999999987655

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=1.2e-17  Score=141.18  Aligned_cols=187  Identities=14%  Similarity=0.129  Sum_probs=127.8

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------VIILNETDHLTREAQQALRRTMEKYIT   89 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------~i~ide~d~l~~~~~~~l~~~i~~~~~   89 (287)
                      +...++..++..+.+|++  ++|.||||+|||||+++|++...+.        .+.+|+.+... .....+++.+.+.++
T Consensus        21 ~~~~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~-~~~~~~~~~i~~~~q   97 (257)
T PRK14246         21 NDKAILKDITIKIPNNSI--FGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQ-IDAIKLRKEVGMVFQ   97 (257)
T ss_pred             CCceeEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCccccc-CCHHHHhcceEEEcc
Confidence            444456666666788988  9999999999999999999987643        23344433211 112234556777777


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH-----HHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI--PPEFALRLAQQSDRNLRR-----AILMC  162 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~G~~r~-----al~~l  162 (287)
                      +..++...+..+++..+...      ....+.++..+.+...++..++.-  .+.....+..+|+|+.|+     |+..-
T Consensus        98 ~~~~~~~~tv~~nl~~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~  171 (257)
T PRK14246         98 QPNPFPHLSIYDNIAYPLKS------HGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALK  171 (257)
T ss_pred             CCccCCCCcHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcC
Confidence            76554444555555433210      011134455566777777777621  123345667899998888     77777


Q ss_pred             HHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         163 EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       163 ~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |+++++|||++++|......+.+.+.++.+.   ++++|+...+...+++++.+
T Consensus       172 P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l  225 (257)
T PRK14246        172 PKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFL  225 (257)
T ss_pred             CCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEE
Confidence            8999999999999999888888888877543   78999999998888887655

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.60  E-value=4.1e-17  Score=135.10  Aligned_cols=171  Identities=14%  Similarity=0.131  Sum_probs=116.7

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE--eCCCCCCcH
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC--ANSMSQVIP  105 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~--~~~~~~l~~  105 (287)
                      +++|+.  ++|.||||+|||||++++++...+.  .|.+|+.+. .     ..++.+.+++++..+...  .+..+++..
T Consensus         3 i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~   74 (223)
T TIGR03771         3 ADKGEL--LGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASP-G-----KGWRHIGYVPQRHEFAWDFPISVAHTVMS   74 (223)
T ss_pred             cCCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-h-----HhhCcEEEecccccccCCCCccHHHHHHh
Confidence            357888  9999999999999999999987654  678887652 1     123345566655433211  122222221


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccC
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVE  180 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~  180 (287)
                      .......  .+.... ......+...++..++  ++.....+.++|+|+.||     |+...+.++++|||++++|....
T Consensus        75 ~~~~~~~--~~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~  149 (223)
T TIGR03771        75 GRTGHIG--WLRRPC-VADFAAVRDALRRVGL--TELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQ  149 (223)
T ss_pred             ccccccc--cccCCc-HHHHHHHHHHHHHhCC--chhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence            1100000  011111 2233456677777787  455556778899999888     77777899999999999999999


Q ss_pred             ccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         181 PDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       181 ~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ..+.+.+.++.+.    ++++|+.+.+..++++++.+
T Consensus       150 ~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l  186 (223)
T TIGR03771       150 ELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL  186 (223)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999888753    77999999999999988754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.60  E-value=4.6e-17  Score=137.84  Aligned_cols=165  Identities=13%  Similarity=0.037  Sum_probs=110.3

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+.+|+.  ++|.||||+|||||+++|++.+.+.  .|.+++...              ...++..+....+..+
T Consensus        41 ~~is~~i~~Ge~--~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~--------------~~~~~~~~~~~~tv~e  104 (264)
T PRK13546         41 DDISLKAYEGDV--IGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVS--------------VIAISAGLSGQLTGIE  104 (264)
T ss_pred             eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEe--------------EEecccCCCCCCcHHH
Confidence            344444477888  9999999999999999999987654  566665210              0011111111111122


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                      ++.....       +...+.++....+..+++..++  .+.....+.++|+|+.|+     |+...|.++++|||++++|
T Consensus       105 nl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD  175 (264)
T PRK13546        105 NIEFKML-------CMGFKRKEIKAMTPKIIEFSEL--GEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD  175 (264)
T ss_pred             HHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence            2211110       1223445555556666766666  455556778899999888     6666688999999999999


Q ss_pred             CccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         177 QIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       176 ~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l  216 (264)
T PRK13546        176 QTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWI  216 (264)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEE
Confidence            88888888888887543    77999999999988887644

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.60  E-value=1.7e-17  Score=135.88  Aligned_cols=165  Identities=16%  Similarity=0.106  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||++++++...+.  .|.+++.+. ...  . .++.+.++++...++...+.
T Consensus        17 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~~--~-~~~~~~~~~~~~~~~~~~tv   90 (207)
T PRK13539         17 LFSGLSFTLAAGEA--LVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI-DDP--D-VAEACHYLGHRNAMKPALTV   90 (207)
T ss_pred             EEeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeC-cch--h-hHhhcEEecCCCcCCCCCcH
Confidence            45556666688999  9999999999999999999987644  677887552 211  1 34445555544433333333


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +.....    +.+...++..|+  .+.....+.++|+|+.||     |+...++++++|||+++
T Consensus        91 ~~~l~~~~~-------~~~~~~----~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~  157 (207)
T PRK13539         91 AENLEFWAA-------FLGGEE----LDIAAALEAVGL--APLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA  157 (207)
T ss_pred             HHHHHHHHH-------hcCCcH----HHHHHHHHHcCC--HHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence            344322111       111122    235566777777  444455677899999888     66666889999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLE  205 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~  205 (287)
                      +|......+.+.+.++.++    ++++|+...+..
T Consensus       158 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~  192 (207)
T PRK13539        158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG  192 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc
Confidence            9999998888888887654    778999887775

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=8.1e-18  Score=143.19  Aligned_cols=182  Identities=14%  Similarity=0.110  Sum_probs=122.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLT-REAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~   93 (287)
                      +++.++..+.+|++  ++|.||||+|||||+++|++...+     .  .|.+++.+... ......+++.+.+++++..+
T Consensus        28 il~~is~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l  105 (269)
T PRK14259         28 AVKNVFCDIPRGKV--TALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP  105 (269)
T ss_pred             EEcceEEEEcCCCE--EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence            45566666688999  999999999999999999998642     2  67778754211 00112344557777777654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++.....       +..... +..+.+...++..++.  +.+...+.+.++|+|+.|+     |+...++++
T Consensus       106 ~~-~tv~enl~~~~~-------~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  176 (269)
T PRK14259        106 FP-KSIYENIAFGAR-------INGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVI  176 (269)
T ss_pred             ch-hhHHHHHhhhhh-------hcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            43 244444433211       111111 2234445556666552  2233345567899999888     666678999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|||++++|......+.+.+.++.+.   |+++|+...+..++|+++.+-
T Consensus       177 lLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~  227 (269)
T PRK14259        177 LMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFN  227 (269)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEe
Confidence            999999999999888888888887533   779999999999999887553

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=2e-17  Score=139.54  Aligned_cols=183  Identities=12%  Similarity=0.111  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTRE-AQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++...+     .  .|.+|+.+..... ....+++.+.+.+++..+
T Consensus        18 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~   95 (250)
T PRK14262         18 AVKNVTMKIFKNQI--TAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP   95 (250)
T ss_pred             eEeeeeEeecCCCE--EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence            45666667788999  999999999999999999997652     2  6788875532111 122345567777776654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++.....-      ......+...+.+...++..++.  +.......+.++|+|+.||     |+..-++++
T Consensus        96 ~~-~tv~e~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~ll  168 (250)
T PRK14262         96 FP-MSIYDNVAFGPRI------HGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVI  168 (250)
T ss_pred             Cc-ccHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEE
Confidence            43 3444444332110      01122333445556666766762  1123445677899999888     666678899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+...+++++.+
T Consensus       169 llDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l  218 (250)
T PRK14262        169 LLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFM  218 (250)
T ss_pred             EEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999888888888887543   77999999999988987654

>KOG0059|consensus

Probab=99.60  E-value=1.3e-16  Score=155.50  Aligned_cols=193  Identities=19%  Similarity=0.107  Sum_probs=151.4

Q ss_pred             CCCCCCccCcHH-HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHh
Q psy2281          10 PNNLQKLDFHCK-QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEK   86 (287)
Q Consensus        10 p~~~~~~~~~~~-~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~   86 (287)
                      ..++...++... +++.+...+++|++  +.+.||||+||||+++++.+...+.  .+++.+.+..........++.+++
T Consensus       567 ~~~L~k~y~~~~~Av~~ls~~V~~gec--fgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGy  644 (885)
T KOG0059|consen  567 LNNLSKVYGGKDGAVRGLSFAVPPGEC--FGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGY  644 (885)
T ss_pred             EcceeeeecchhhhhcceEEEecCCce--EEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhccc
Confidence            344555555444 56666666789999  9999999999999999999998766  666777665433333446778998


Q ss_pred             ccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHH
Q psy2281          87 YITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILM  161 (287)
Q Consensus        87 ~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~  161 (287)
                      .||.-.+....|..+.+..--+       +++....++.+.+++.++..++  .+.+...+..+|+|+.|+     |+..
T Consensus       645 CPQ~d~l~~~lT~rEhL~~~ar-------lrG~~~~di~~~v~~ll~~~~L--~~~~~~~~~~ySgG~kRkLs~aialig  715 (885)
T KOG0059|consen  645 CPQFDALWEELTGREHLEFYAR-------LRGLPRSDIGSAIEKLLRLVGL--GPYANKQVRTYSGGNKRRLSFAIALIG  715 (885)
T ss_pred             CCchhhhhhhccHHHHHHHHHH-------HcCCChhHHHHHHHHHHHHcCC--hhhhccchhhCCCcchhhHHHHHHHhc
Confidence            8887655555555554433222       5678888999999999999988  677777788999999999     6666


Q ss_pred             HHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .|.++++|||++++|+..+..+.+.+.++.+.    ++.+|++++.+.+|+++.-+
T Consensus       716 ~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aIm  771 (885)
T KOG0059|consen  716 DPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIM  771 (885)
T ss_pred             CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhhee
Confidence            67899999999999999999999999999874    78999999999999998733

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=1.3e-17  Score=140.24  Aligned_cols=185  Identities=12%  Similarity=0.094  Sum_probs=126.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---P--VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||++++++...+   .  .|.+|+.+.... ....+++.+.+++++..++. 
T Consensus        17 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~-~~~~~~~~i~~~~q~~~l~~-   92 (246)
T PRK14269         17 ALFDINMQIEQNKI--TALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ-DVVALRKNVGMVFQQPNVFV-   92 (246)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC-CHHHHhhhEEEEecCCcccc-
Confidence            45556666688888  999999999999999999998631   2  677887653221 12344566888888765544 


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI--PPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+..+++.....-+    .+. .........+...++..++.-  .+...+...++|+|+.|+     |+...++++++|
T Consensus        93 ~tv~eni~~~~~~~----~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD  167 (246)
T PRK14269         93 KSIYENISYAPKLH----GMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLD  167 (246)
T ss_pred             ccHHHHhhhHHhhc----Ccc-cChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence            35556654332100    010 122344455677777777720  122334566799999888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      ||++++|......+.+.+.++.+.   ++++|+...+...+|+++.+-.
T Consensus       168 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~  216 (246)
T PRK14269        168 EPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHL  216 (246)
T ss_pred             CCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEEC
Confidence            999999998888888888776533   7799999999999998875533

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.60  E-value=1.8e-17  Score=139.94  Aligned_cols=184  Identities=13%  Similarity=0.101  Sum_probs=127.2

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C-----CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G-----PVIILNETDHLTR-EAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~-----~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...  +     ..|.+++.+.... .....+++.+.+++++..
T Consensus        19 ~~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~   96 (252)
T PRK14239         19 KALNSVSLDFYPNEI--TALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN   96 (252)
T ss_pred             eeeeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc
Confidence            355666666788999  99999999999999999998732  2     2677887543211 112234556777787765


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      ++. .+..+++.....       +... ..+.....+...++..++.  +.+...+.+.++|+|+.|+     |+...+.
T Consensus        97 ~~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~  168 (252)
T PRK14239         97 PFP-MSIYENVVYGLR-------LKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPK  168 (252)
T ss_pred             cCc-CcHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence            543 455555543322       1111 2333455566677776652  1223345567899999888     6666789


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++++|||++++|......+.+.+.++.+.   ++++|+...+...+|+++.+-
T Consensus       169 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~  221 (252)
T PRK14239        169 IILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFL  221 (252)
T ss_pred             EEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEE
Confidence            99999999999999988888888887543   779999999999999887553

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=1.2e-17  Score=140.99  Aligned_cols=184  Identities=15%  Similarity=0.101  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|+.  ++|.||||+|||||+++|++...+       ..|.+++.+.... ......++.+.+++++..
T Consensus        20 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   97 (253)
T PRK14261         20 HALYDITISIPKNRV--TALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN   97 (253)
T ss_pred             eeeeeeEEEECCCcE--EEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence            345566666688999  999999999999999999987531       2677887553211 012234455677777665


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++. .+..+++......      ....+..+....+.+.++..++.  +.....+....+|+|+.|+     ++...|++
T Consensus        98 ~~~-~tv~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  170 (253)
T PRK14261         98 PFP-KSIYENVAYGPRI------HGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEV  170 (253)
T ss_pred             cCc-ccHHHHHHhhHHh------cCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            544 2455555432210      01112334455666667766652  2233455677899999888     66667899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+...+++++.+
T Consensus       171 llLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l  221 (253)
T PRK14261        171 ILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFM  221 (253)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEE
Confidence            9999999999999888888888887643   77999999999988987754

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.7e-17  Score=141.30  Aligned_cols=183  Identities=15%  Similarity=0.154  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETDHLTR-EAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...     +.  .|.+++.+.... .....+++.+.+++++..
T Consensus        35 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  112 (268)
T PRK14248         35 RAVNDISMDIEKHAV--TALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN  112 (268)
T ss_pred             eeeeceEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence            345566666688999  99999999999999999999753     12  677777543211 112234555777777765


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      ++. .+..+++...+.       +.. .........+...++..++.  +.....+.+.++|+|+.||     |+...++
T Consensus       113 ~~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~  184 (268)
T PRK14248        113 PFP-KSIYNNITHALK-------YAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPA  184 (268)
T ss_pred             cCc-ccHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCC
Confidence            443 244444433321       111 12223344556666666652  1123345677899999888     6667789


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|||++++|......+.+.+.++.+.   ++++|+...+...+++++.+
T Consensus       185 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l  236 (268)
T PRK14248        185 VLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFF  236 (268)
T ss_pred             EEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEE
Confidence            99999999999999998888888888543   77999999999999987755

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.59  E-value=2.7e-17  Score=152.00  Aligned_cols=187  Identities=13%  Similarity=0.123  Sum_probs=127.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-C--EEEEeCCCCCCHHHHHHHHHHHHhccCCc---EEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-P--VIILNETDHLTREAQQALRRTMEKYITTC---RLIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~---~~i~   95 (287)
                      +.+.++..+.+|++  ++|.||||+|||||++++++...+ .  .|.+++.+.-.......+++.+.+++|+.   .++.
T Consensus       275 ~l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~  352 (500)
T TIGR02633       275 RVDDVSFSLRRGEI--LGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVP  352 (500)
T ss_pred             ccccceeEEeCCcE--EEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCC
Confidence            45666666788999  999999999999999999999763 2  67777754311111123344566666664   2333


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++..+......  .+...........+...++..++. .....+.+..+|+|+.||     |+...|.++++||
T Consensus       353 ~~tv~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE  429 (500)
T TIGR02633       353 ILGVGKNITLSVLKSFC--FKMRIDAAAELQIIGSAIQRLKVK-TASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE  429 (500)
T ss_pred             CCCHHHHhcchhhhhhc--cCCcCCHHHHHHHHHHHHHhcCcc-CCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence            23333444332211100  011123334455677788888872 123456788999999998     6666689999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|......+.+.+.++.+.    |+++|+...+..++++++.+
T Consensus       430 Pt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l  476 (500)
T TIGR02633       430 PTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVI  476 (500)
T ss_pred             CCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            99999999999888888888765    78999999999999988754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.59  E-value=8.7e-17  Score=136.76  Aligned_cols=183  Identities=13%  Similarity=0.091  Sum_probs=128.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+     .  .|.+|+.+.... .....+++.+.++++...+
T Consensus        35 il~~vsl~i~~Ge~--~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~  112 (267)
T PRK14237         35 AIKGIDMQFEKNKI--TALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP  112 (267)
T ss_pred             eEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence            45555566688998  999999999999999999998742     1  678888653110 1122345567777777655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++..+...      ....+..+....+.+.++..++.  +.+...+.+.++|+|+.|+     |+..-++++
T Consensus       113 ~~-~tv~eni~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~ll  185 (267)
T PRK14237        113 FA-KSIYENITFALER------AGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDIL  185 (267)
T ss_pred             cc-ccHHHHHHhHHHh------cCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence            44 3555665443221      11123445556677777777762  1223345567899998888     666778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++|+++.+
T Consensus       186 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l  235 (267)
T PRK14237        186 LMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFF  235 (267)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEE
Confidence            999999999998888888888887543   77999999999999987755

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.59  E-value=1e-16  Score=164.17  Aligned_cols=176  Identities=15%  Similarity=0.102  Sum_probs=133.9

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++.++..+.+|++  ++|.||||+||||++++|++...++  .+.+++.+.- .. ....++.+++.+|+..++...++.
T Consensus       946 L~~lsl~I~~Gei--~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~-~~-~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257       946 VDRLNITFYENQI--TAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE-TN-LDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred             EEeeEEEEcCCcE--EEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECc-ch-HHHHhhcEEEEecCCcCCCCCCHH
Confidence            3444444578888  9999999999999999999998766  7778886632 22 234456677777776555555566


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++....+       ++..+.++..+.+.+.++..|+  ++...+.+.++|+|+.||     |+...++++++|||++++
T Consensus      1022 E~L~f~~~-------lkg~~~~~~~~~v~~lL~~vgL--~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGL 1092 (2272)
T TIGR01257      1022 EHILFYAQ-------LKGRSWEEAQLEMEAMLEDTGL--HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV 1092 (2272)
T ss_pred             HHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCC
Confidence            66544332       2334455666677888888887  666777889999999998     666678999999999999


Q ss_pred             cCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~  211 (287)
                      |+..+..+.+.+.++.+.   |+++|+.+.+..++|++.
T Consensus      1093 Dp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~ 1131 (2272)
T TIGR01257      1093 DPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIA 1131 (2272)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEE
Confidence            999999999999888533   789999999999888765

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.59  E-value=6.7e-17  Score=149.32  Aligned_cols=187  Identities=14%  Similarity=0.151  Sum_probs=127.7

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE---EEEEe
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR---LILCA   97 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~---~i~~~   97 (287)
                      .+.++..+.+|++  ++|.||||+|||||++++++...++  .|.+++.+.-.......+++.+.+++|+..   ++...
T Consensus       268 l~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  345 (501)
T PRK10762        268 VNDVSFTLRKGEI--LGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM  345 (501)
T ss_pred             cccceEEEcCCcE--EEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence            4455555688888  9999999999999999999987654  677877542111111233445777777642   33333


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..+....... .+...+..+..+.+..+++..++. .+...+.+.++|+|+.||     |+..-+.++++|||+
T Consensus       346 tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt  423 (501)
T PRK10762        346 SVKENMSLTALRYFSR-AGGSLKHADEQQAVSDFIRLFNIK-TPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPT  423 (501)
T ss_pred             cHHHHhhhhhhhhhcc-cccccCHHHHHHHHHHHHHhcCCC-CCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence            3444443221100000 011122334445677778887772 133567788999999998     666678999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.++    |+++|+.+.+..++++++.+
T Consensus       424 ~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l  468 (501)
T PRK10762        424 RGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVM  468 (501)
T ss_pred             CCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEE
Confidence            999999999999999998764    78999999999999988755

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.9e-17  Score=139.75  Aligned_cols=182  Identities=12%  Similarity=0.106  Sum_probs=122.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C-----CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G-----PVIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~-----~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...  +     ..|.+++.+.... .....+++.+.+++++..+
T Consensus        20 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~   97 (252)
T PRK14255         20 ALKGIDLDFNQNEI--TALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP   97 (252)
T ss_pred             EEecceEEEcCCCE--EEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence            45556666688998  99999999999999999999743  1     2677887653211 1122334456667766554


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +. .+..+++.....       .... ..+.....+...++..++.  +.+.....+.++|+|+.||     ++...+++
T Consensus        98 ~~-~tv~~nl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  169 (252)
T PRK14255         98 FP-FSIYENVIYGLR-------LAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDV  169 (252)
T ss_pred             CC-CcHHHHHHHHHH-------HcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            43 344444433322       1111 2222334455556665542  2233345567799999888     67777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       170 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l  220 (252)
T PRK14255        170 ILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFF  220 (252)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEE
Confidence            9999999999999988888888888654   77999999999989987654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.59  E-value=7.2e-17  Score=150.11  Aligned_cols=185  Identities=15%  Similarity=0.153  Sum_probs=129.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCc
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDH--LTREAQQALR-RTMEKYITTC   91 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~   91 (287)
                      +.+.++..+.+|++  ++|.||||||||||+++|++.+.+     .  .|.+++.+.  .+.......+ +.+.+++|+.
T Consensus        24 ~l~~isl~i~~Ge~--~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~  101 (529)
T PRK15134         24 VVNDVSLQIEAGET--LALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP  101 (529)
T ss_pred             eeeceEEEEeCCCE--EEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence            55666777789999  999999999999999999999864     2  677787653  1211111222 3466666664


Q ss_pred             E--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          92 R--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI-PPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        92 ~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      .  +....+..+++......      ....+..+..+.+...++..|+.- .....+.+.++|+|+.||     |+...|
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p  175 (529)
T PRK15134        102 MVSLNPLHTLEKQLYEVLSL------HRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRP  175 (529)
T ss_pred             hhhcCchhhHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCC
Confidence            2  22222222333222110      112345566677888888888841 112456788999999998     677778


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++++|||++++|+.....+.+.+.++.++     |+++|+.+.+..++|+++.+-
T Consensus       176 ~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~  231 (529)
T PRK15134        176 ELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ  231 (529)
T ss_pred             CEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEE
Confidence            999999999999999999999999998654     789999999999999887553

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.59  E-value=3.3e-17  Score=137.98  Aligned_cols=187  Identities=11%  Similarity=-0.018  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +...++..+++|+.  +.|.||||+|||||+++|++..  .+.  .|.+++.+.-........+..+.+++++..++...
T Consensus        16 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   93 (248)
T PRK09580         16 ILRGLNLEVRPGEV--HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV   93 (248)
T ss_pred             eeecceeEEcCCCE--EEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence            45566666788999  9999999999999999999985  233  67888765321111111122355555554433322


Q ss_pred             CCCCCCcHHHhccccee-ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH-HH-HHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          98 NSMSQVIPAIRSRCLCI-RIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-LA-QQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-l~-~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      +....+. ......... ........+...++...++..++  ++..... .. .+|+|+.|+     |+...|.++++|
T Consensus        94 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLD  170 (248)
T PRK09580         94 SNQFFLQ-TALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM--PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD  170 (248)
T ss_pred             hHHHHHH-HhhhhhhcccccccchHHHHHHHHHHHHHHcCC--ChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence            2111100 000000000 01112233445666777777776  3332222 32 699998888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.    ++++|+...+... +++++.+
T Consensus       171 EPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l  219 (248)
T PRK09580        171 ESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL  219 (248)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEE
Confidence            999999999988888888888653    7799998888776 6765533

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.1e-16  Score=137.38  Aligned_cols=183  Identities=11%  Similarity=0.109  Sum_probs=125.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C---C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G---P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~---~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +++.++..+..|++  ++|.||||+|||||+++|++...  +   .  .|.+|+.+.... .....+++.+.+++++..+
T Consensus        54 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l  131 (286)
T PRK14275         54 AVKKVNADILSKYV--TAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP  131 (286)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence            34455555678888  99999999999999999999642  2   2  677887542111 1112345567777777654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +. .+..+++..+..       +... +.....+.+...++..++.  +.+...+.+..+|+|+.||     |+...+++
T Consensus       132 ~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~l  203 (286)
T PRK14275        132 FP-KSIFDNIAYGPR-------LHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEI  203 (286)
T ss_pred             Cc-cCHHHHHHhHHH-------hcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            43 244555543321       1111 2334455666677776652  2344456678899999888     66667899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++|||++++|......+.+.+.++...   |+++|+...+..++++++.+-
T Consensus       204 llLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~  255 (286)
T PRK14275        204 LLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFY  255 (286)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999999888888888887653   779999999999999877553

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.59  E-value=5.5e-17  Score=139.06  Aligned_cols=186  Identities=14%  Similarity=0.158  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------EEEEeCCCCCC--HHHHHHHHH-HHHhccC
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------VIILNETDHLT--REAQQALRR-TMEKYIT   89 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------~i~ide~d~l~--~~~~~~l~~-~i~~~~~   89 (287)
                      ..+++.++..+..|+.  +.++|.||||||-.+..+.+.+..+       -|.+++.|.+.  +.....++- .+..++|
T Consensus        23 ~~aVk~isf~i~~GEt--lAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ  100 (534)
T COG4172          23 VEAVKGISFDIEAGET--LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ  100 (534)
T ss_pred             eEeeccceeeecCCCE--EEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence            3456777777799999  9999999999999999999998753       78889888654  333333332 2444454


Q ss_pred             CcE--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHH
Q psy2281          90 TCR--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILM  161 (287)
Q Consensus        90 ~~~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~  161 (287)
                      ++.  +-+..+....+.++++-      -...+.++.+.++.+.++..|+.-++ ....+..++|||+.+|     |+..
T Consensus       101 EPMtSLNPl~tIg~Qi~E~l~~------Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan  174 (534)
T COG4172         101 EPMTSLNPLHTIGKQLAEVLRL------HRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALAN  174 (534)
T ss_pred             ccccccCcHhHHHHHHHHHHHH------HhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcC
Confidence            431  11111111235555542      24678888999999999999996433 3457789999999999     6666


Q ss_pred             HHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         162 CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       162 l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .|++++.||||+++|......+.++++++..+     +++||+..-+.++.|+++.+
T Consensus       175 ~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM  231 (534)
T COG4172         175 EPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVM  231 (534)
T ss_pred             CCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEE
Confidence            78999999999999999999999999999887     78999999999999999855

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.59  E-value=2.3e-17  Score=134.23  Aligned_cols=165  Identities=18%  Similarity=0.065  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+.+|+.  ++|.||||+|||||++++++...+.  .|.+++.+.-...  ..+++.+.+.+++..++...+.
T Consensus        15 ~l~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~~~~~~tv   90 (198)
T TIGR01189        15 LFEGLSFTLNAGEA--LQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR--DEPHRNILYLGHLPGLKPELSA   90 (198)
T ss_pred             EEeeeeEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch--HHhhhheEEeccCcccccCCcH
Confidence            44555666688988  9999999999999999999987655  6778875422111  1233445555555443332333


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +....    ...+...++..++  ++.....+.++|+|+.|+     |+...|+++++|||+++
T Consensus        91 ~~~l~~~~~-------~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~  157 (198)
T TIGR01189        91 LENLHFWAA-------IHGGA----QRTIEDALAAVGL--TGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTA  157 (198)
T ss_pred             HHHHHHHHH-------HcCCc----HHHHHHHHHHcCC--HHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence            333322111       11111    2345566666676  455566788999999888     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKL  203 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~  203 (287)
                      +|......+.+.+.++.+.    ++++|+...+
T Consensus       158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~  190 (198)
T TIGR01189       158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL  190 (198)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc
Confidence            9998888888888877543    6688876443

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=1.6e-16  Score=134.01  Aligned_cols=182  Identities=14%  Similarity=0.135  Sum_probs=126.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh---CC----CEEEEeCCCCCCHH-HHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL---YG----PVIILNETDHLTRE-AQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~---~~----~~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++..   .+    ..|.+|+.+..... ....+++.+.+++++..+
T Consensus        18 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   95 (250)
T PRK14245         18 ALKGISMEIEEKSV--VAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP   95 (250)
T ss_pred             EEeeeeEEEeCCCE--EEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence            34455556688998  9999999999999999999862   21    26788876532211 123445567777777654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +. .+..+++.....       .... ..+...+.+...++..++.  +.+...+...++|+|+.||     |+...|++
T Consensus        96 ~~-~tv~~nl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l  167 (250)
T PRK14245         96 FP-KSIFENVAYGLR-------VNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSV  167 (250)
T ss_pred             Cc-ccHHHHHHHHHH-------HcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            43 344455443322       1111 2233445666777777763  1223445577899999888     67777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+...+|+++.+
T Consensus       168 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l  218 (250)
T PRK14245        168 LLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFF  218 (250)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEE
Confidence            9999999999999998888888887543   77999999999999987755

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.58  E-value=8.9e-17  Score=134.75  Aligned_cols=155  Identities=17%  Similarity=0.079  Sum_probs=106.5

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~  108 (287)
                      .+|++  ++|.||||+|||||+++|++...+.  .|.+++.             .+.+.+++....+..+..+++.....
T Consensus        23 ~~Ge~--~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-------------~i~~~~q~~~~~~~~tv~e~l~~~~~   87 (246)
T cd03237          23 SESEV--IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-------------TVSYKPQYIKADYEGTVRDLLSSITK   87 (246)
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-------------eEEEecccccCCCCCCHHHHHHHHhh
Confidence            45677  9999999999999999999987654  5666652             13333343322222222222211110


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW  183 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~  183 (287)
                      .      ..  ..   .....++++..++  ++...+.+.++|+|+.|+     |+...+.++++|||++.+|......+
T Consensus        88 ~------~~--~~---~~~~~~~l~~l~l--~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l  154 (246)
T cd03237          88 D------FY--TH---PYFKTEIAKPLQI--EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMA  154 (246)
T ss_pred             h------cc--cc---HHHHHHHHHHcCC--HHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence            0      00  00   1223455666666  455566788999999888     66677899999999999999999989


Q ss_pred             HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .+.+.++.+.     ++++|+...+..++|+++.+
T Consensus       155 ~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l  189 (246)
T cd03237         155 SKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF  189 (246)
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            8999988653     78999999999999987644

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=1.7e-17  Score=139.94  Aligned_cols=183  Identities=13%  Similarity=0.097  Sum_probs=125.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+       ..|.+++.+.... .....+++.+.+++++..+
T Consensus        19 il~~~s~~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~   96 (251)
T PRK14249         19 VLKNINMDFPERQI--TAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNP   96 (251)
T ss_pred             EecceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCcc
Confidence            45566666688998  999999999999999999998764       2677887553211 1122345567777777654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +. .+..+++.....       +... ..+...+.+...++..++.  +.+...+.+.++|+|+.|+     |+..-|++
T Consensus        97 ~~-~tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  168 (251)
T PRK14249         97 FP-KSIFDNVAFGPR-------MLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEV  168 (251)
T ss_pred             Cc-CcHHHHHhhHHH-------hcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            43 244455443221       1111 2233444555566666652  1223345567799999888     67777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+-
T Consensus       169 llLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~  220 (251)
T PRK14249        169 ILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLL  220 (251)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEe
Confidence            9999999999999888888888887432   779999999999999887553

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.58  E-value=8.8e-18  Score=134.78  Aligned_cols=152  Identities=14%  Similarity=0.116  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||+|||||++++++...+.  .|.+|+.+..........++.+.+.+++..       
T Consensus        15 ~l~~vs~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~-------   85 (182)
T cd03215          15 AVRDVSFEVRAGEI--VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRK-------   85 (182)
T ss_pred             eecceEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcc-------
Confidence            44555555678888  9999999999999999999987655  777887553211111122222333332210       


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      ...+            +...+..+.....   .                .+|+|+.|+     |+...+.++++|||+++
T Consensus        86 ~~~~------------~~~~t~~e~l~~~---~----------------~LS~G~~qrl~la~al~~~p~llllDEP~~~  134 (182)
T cd03215          86 REGL------------VLDLSVAENIALS---S----------------LLSGGNQQKVVLARWLARDPRVLILDEPTRG  134 (182)
T ss_pred             cCcc------------cCCCcHHHHHHHH---h----------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcC
Confidence            0001            1111111111000   0                077777776     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.    ++++|+...+..++++++.+
T Consensus       135 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l  177 (182)
T cd03215         135 VDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVM  177 (182)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEe
Confidence            9999999998888888653    77999999898888876543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2.2e-17  Score=152.56  Aligned_cols=188  Identities=12%  Similarity=0.080  Sum_probs=126.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE---EEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR---LILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~---~i~~   96 (287)
                      +++.++..+.+|++  +.|.||||||||||+++|++...+.  .|.+++.+.-........++.+.+++|+..   ++..
T Consensus       268 ~l~~isl~i~~Ge~--~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~  345 (501)
T PRK11288        268 LREPISFSVRAGEI--VGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPV  345 (501)
T ss_pred             cccceeEEEeCCcE--EEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCC
Confidence            44555556688988  9999999999999999999987644  677776442111111233445666666542   3333


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++..+...+.....+ ..+.....+.+.+.++..++. .+...+.+.++|+|+.||     ++...++++++|||
T Consensus       346 ~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP  423 (501)
T PRK11288        346 HSVADNINISARRHHLRAGC-LINNRWEAENADRFIRSLNIK-TPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP  423 (501)
T ss_pred             CCHHHHhccccchhhccccc-ccChHHHHHHHHHHHHhcCcc-cCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence            34444443221110000000 012223334567777777772 133567788999999998     56666899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.+.    |+++|+.+.+..++++++.+
T Consensus       424 t~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l  469 (501)
T PRK11288        424 TRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVM  469 (501)
T ss_pred             CCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEE
Confidence            9999999999999999888764    78999999999999988754

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2e-17  Score=139.62  Aligned_cols=186  Identities=15%  Similarity=0.146  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++.+.+       ..|.+++.+.-.. .....+++.+.+++++..
T Consensus        18 ~~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~   95 (252)
T PRK14272         18 QAVKNVNLDVQRGTV--NALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN   95 (252)
T ss_pred             EeeccceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence            355666666788999  999999999999999999998642       2677787542110 112234555777777765


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++...+..+++.....-      ......++..+.+...++..++.  +.+.....+.++|+|+.||     |+...|.+
T Consensus        96 ~~~~~t~~enl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  169 (252)
T PRK14272         96 PFPTMSVFDNVVAGLKL------AGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEI  169 (252)
T ss_pred             cCcCCCHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            54444555554332210      01112334445555555555441  1223344567899999888     67777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+...+++++.+-
T Consensus       170 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  221 (252)
T PRK14272        170 LLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFL  221 (252)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999999888888888887533   779999999999999887553

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.58  E-value=2.3e-16  Score=128.52  Aligned_cols=166  Identities=13%  Similarity=0.109  Sum_probs=114.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+||||++++|++...+.  -|.+|+.+. .. ....+++.+.++++...+....+.
T Consensus        16 il~~~s~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~-~~-~~~~~~~~i~~~~q~~~~~~~~tv   91 (200)
T PRK13540         16 LLQQISFHLPAGGL--LHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI-KK-DLCTYQKQLCFVGHRSGINPYLTL   91 (200)
T ss_pred             EEeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcc-cc-CHHHHHhheEEeccccccCcCCCH
Confidence            45566666688999  9999999999999999999987655  778887653 21 123345556666665544333344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       . ...    ...+...++..++  .+.....+..+|+|+.|+     |+...|.++++|||+++
T Consensus        92 ~~~~~~~~~-------~-~~~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~  157 (200)
T PRK13540         92 RENCLYDIH-------F-SPG----AVGITELCRLFSL--EHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA  157 (200)
T ss_pred             HHHHHHHHh-------c-Ccc----hHHHHHHHHHcCC--chhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            444332211       1 111    1245666676676  444455667899999888     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLE  205 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~  205 (287)
                      +|......+.+.+.++.+.    ++++|+...+..
T Consensus       158 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~  192 (200)
T PRK13540        158 LDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK  192 (200)
T ss_pred             cCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence            9999988888888887544    678888766654

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.58  E-value=4.3e-16  Score=118.73  Aligned_cols=181  Identities=18%  Similarity=0.181  Sum_probs=136.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC----CCCC---HHHHHHHHHHHHhccCCcE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET----DHLT---REAQQALRRTMEKYITTCR   92 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~----d~l~---~~~~~~l~~~i~~~~~~~~   92 (287)
                      +...++..++.|++  +++.||+|+||||+++++-+...++  .|.+.-.    |...   .+....-++++++++|-.+
T Consensus        26 V~~~vslsV~aGEC--vvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR  103 (235)
T COG4778          26 VLRNVSLSVNAGEC--VVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR  103 (235)
T ss_pred             eeeceeEEecCccE--EEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence            35566667789999  9999999999999999999888766  4444422    2222   2223344667999999888


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHH-HHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      .|+-.+..+-+.+|+..|       ..+.+.........+.+.++  ++.... ..+..|||+.||     .+...-.++
T Consensus       104 viPRV~aLdVvaePll~~-------gv~~~~a~~~a~~Ll~rLnl--perLW~LaPaTFSGGEqQRVNIaRgfivd~pIL  174 (235)
T COG4778         104 VIPRVSALDVVAEPLLAR-------GVPREVARAKAADLLTRLNL--PERLWSLAPATFSGGEQQRVNIARGFIVDYPIL  174 (235)
T ss_pred             hccCcchHHHHHhHHHHc-------CCCHHHHHHHHHHHHHHcCC--CHHHhcCCCcccCCchheehhhhhhhhccCceE
Confidence            888877888888888744       56777888888888888887  555443 356789998887     455555677


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||+.++|..++..+.++|.+-...    +-+-||.+.-+.++|++.++
T Consensus       175 LLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~  225 (235)
T COG4778         175 LLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV  225 (235)
T ss_pred             EecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeec
Confidence            899999999999998888888776554    44678888888888887654

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.57  E-value=3.8e-13  Score=126.31  Aligned_cols=159  Identities=20%  Similarity=0.288  Sum_probs=117.1

Q ss_pred             ccCCCCCCCccCcHHHHHHHHHHHhc---CCCC-c-EEEeCCCCCcHHHHHHHHHHHhC-----------------CC--
Q psy2281           7 KYRPNNLQKLDFHCKQANHLRNLLKE---GDFP-H-LLFYGPSGAGKKTRIMALLKELY-----------------GP--   62 (287)
Q Consensus         7 k~~p~~~~~~~~~~~~~~~l~~~~~~---g~~~-~-~~l~Gp~G~GKTtl~~~l~~~~~-----------------~~--   62 (287)
                      -|.|   +.+.+.+...+.|..++..   |..| + ++|+|+||+|||++++.+++.+.                 +.  
T Consensus       751 DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L  827 (1164)
T PTZ00112        751 DVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV  827 (1164)
T ss_pred             ccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence            4667   4567777666655555522   3333 3 57999999999999999876551                 00  


Q ss_pred             --------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccC-C--cEEEE
Q psy2281          63 --------------------------------------------VIILNETDHLTREAQQALRRTMEKYIT-T--CRLIL   95 (287)
Q Consensus        63 --------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~-~--~~~i~   95 (287)
                                                                  +|++||+|.+....+..|+..+..+.. .  ..+|.
T Consensus       828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG  907 (1164)
T PTZ00112        828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA  907 (1164)
T ss_pred             CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence                                                        799999999886666777766664422 2  23445


Q ss_pred             EeCC---CCCCcHHHhcccce--eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---HcCCcHHHHHHHHHHHhh
Q psy2281          96 CANS---MSQVIPAIRSRCLC--IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ---QSDRNLRRAILMCEASKV  167 (287)
Q Consensus        96 ~~~~---~~~l~~~l~sr~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~s~G~~r~al~~l~~~~~  167 (287)
                      ++|.   ++.+.+.++||+..  +.|++++.+++..+|...++...-.+++++++++++   ..+||+|+|+..+..+..
T Consensus       908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE  987 (1164)
T PTZ00112        908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE  987 (1164)
T ss_pred             ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence            5554   34577889999853  889999999999999999886544579999999998   778999999999987765


Q ss_pred             c
Q psy2281         168 Q  168 (287)
Q Consensus       168 ~  168 (287)
                      .
T Consensus       988 i  988 (1164)
T PTZ00112        988 N  988 (1164)
T ss_pred             h
Confidence            4

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.57  E-value=2.9e-17  Score=139.48  Aligned_cols=182  Identities=12%  Similarity=0.095  Sum_probs=122.8

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCC-HHHHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLT-REAQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~   92 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...+       ..|.+|+.+... ......+++.+.+++++..
T Consensus        24 ~il~~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~  101 (264)
T PRK14243         24 LAVKNVWLDIPKNQI--TAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN  101 (264)
T ss_pred             EEeecceEEEcCCCE--EEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence            355666777788999  999999999999999999997641       267788754211 0012234556777777765


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      ++. .+..+++..+..       ..... .+..+.+...++..++.  +.....+.+.++|+|+.|+     |+...|++
T Consensus       102 ~~~-~tv~enl~~~~~-------~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l  172 (264)
T PRK14243        102 PFP-KSIYDNIAYGAR-------INGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEV  172 (264)
T ss_pred             ccc-ccHHHHHHhhhh-------hcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence            443 244455433221       11111 12233444455555551  1122334566799999888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       173 llLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l  223 (264)
T PRK14243        173 ILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFF  223 (264)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            9999999999999988888888887644   77999999999999988755

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.57  E-value=2.2e-17  Score=140.77  Aligned_cols=183  Identities=14%  Similarity=0.093  Sum_probs=125.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|++  ++|.||||+|||||++++++...+     .  .|.+|+.+.... .....+++.+.+++++..+
T Consensus        40 il~~vs~~i~~Ge~--~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l  117 (272)
T PRK14236         40 ALFDISMRIPKNRV--TAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP  117 (272)
T ss_pred             EeeeEEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence            45556666688999  999999999999999999998652     2  677887653211 1122345567777776654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      +.. +..+++.....       +... ..+...+.+...++..++.  +.+...+...++|+|+.||     |+...+++
T Consensus       118 ~~~-tv~enl~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l  189 (272)
T PRK14236        118 FPK-SIYENVVYGLR-------LQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEV  189 (272)
T ss_pred             Ccc-cHHHHHHHHHH-------hcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCE
Confidence            432 44455433221       1111 2233445566666666662  1122334567899999888     66677899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+...+++++.+-
T Consensus       190 llLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~  241 (272)
T PRK14236        190 LLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMY  241 (272)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEE
Confidence            9999999999999888888888887644   779999999999899887553

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.57  E-value=2e-16  Score=126.67  Aligned_cols=146  Identities=18%  Similarity=0.152  Sum_probs=104.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||++++++...+.  .|.+++.+..... ...+++.+.++++          
T Consensus        14 ~l~~~~~~i~~G~~--~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~-~~~~~~~i~~~~q----------   80 (180)
T cd03214          14 VLDDLSLSIEAGEI--VGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS-PKELARKIAYVPQ----------   80 (180)
T ss_pred             eEeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC-HHHHHHHHhHHHH----------
Confidence            34455555678888  9999999999999999999987654  6777765431111 1123334554444          


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                                                     .++..++  .+.....+..+|+|+.|+     |+...|.++++|||+++
T Consensus        81 -------------------------------~l~~~gl--~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~  127 (180)
T cd03214          81 -------------------------------ALELLGL--AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSH  127 (180)
T ss_pred             -------------------------------HHHHcCC--HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccC
Confidence                                           3333444  333344566788888777     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     ++++|+...+..++|+++.+
T Consensus       128 LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l  171 (180)
T cd03214         128 LDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILL  171 (180)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999988888889888663     77999999888888876643

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=2.9e-17  Score=140.16  Aligned_cols=182  Identities=12%  Similarity=0.085  Sum_probs=123.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+       ..|.+++.+.... .....+++.+.+++++..+
T Consensus        35 ~l~~vs~~i~~Ge~--~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l  112 (274)
T PRK14265         35 ALVDVHLKIPAKKI--IAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP  112 (274)
T ss_pred             EEeeeeeEEcCCCE--EEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence            45566666688999  999999999999999999987631       2678888653211 1122345567777777654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +. .+..+++.....       +..... ...+.+...++..++.  +.+...+.+.++|+|+.||     |+..-|+++
T Consensus       113 ~~-~tv~~nl~~~~~-------~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~ll  183 (274)
T PRK14265        113 FP-KSIYENIAFAPR-------ANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVL  183 (274)
T ss_pred             cc-ccHHHHHHhHHH-------hcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEE
Confidence            43 244444433211       111111 1223345555555652  1223334567799999888     777778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+.
T Consensus       184 lLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~  234 (274)
T PRK14265        184 LMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFN  234 (274)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence            999999999999998888888887543   779999999999999887653

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.57  E-value=2.1e-15  Score=123.29  Aligned_cols=177  Identities=14%  Similarity=0.146  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhc-cCCcEEEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKY-ITTCRLILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~-~~~~~~i~~~~   98 (287)
                      ++..++..+.+|+.  +.+.||||+||||+++.+.+.+.|.  .|-+.+.+-..  .+.+..+.++.+ .+...+.....
T Consensus        39 AVqdisf~IP~G~i--vgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~--~~~~~~~~~~~v~gqk~ql~Wdlp  114 (325)
T COG4586          39 AVQDISFEIPKGEI--VGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR--RREEYLRSIGLVMGQKLQLWWDLP  114 (325)
T ss_pred             hhheeeeecCCCcE--EEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch--hHHHHHHHHHHHhhhhheeeeech
Confidence            34445555577888  9999999999999999999998877  66666665333  334444445443 23334444433


Q ss_pred             CCCC--CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          99 SMSQ--VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        99 ~~~~--l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      ..+.  +...         +...+.++..+++....+-.++  ++.....+..+|-|+.+|     ++..-|+++++|||
T Consensus       115 ~~ds~~v~~~---------Iy~Ipd~~F~~r~~~l~eiLdl--~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEp  183 (325)
T COG4586         115 ALDSLEVLKL---------IYEIPDDEFAERLDFLTEILDL--EGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEP  183 (325)
T ss_pred             hhhhHHHHHH---------HHhCCHHHHHHHHHHHHHHhcc--hhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCC
Confidence            2222  2222         3456777888888877777777  667778888999998888     44445788999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |-++|......+.+.+++..+.     ++.+|+..++...|++++.+
T Consensus       184 TvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I  230 (325)
T COG4586         184 TVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLI  230 (325)
T ss_pred             ccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEe
Confidence            9999999999999888888765     77999999999999999854

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.56  E-value=5.7e-17  Score=126.18  Aligned_cols=191  Identities=13%  Similarity=0.063  Sum_probs=142.4

Q ss_pred             cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC-CCCCCHHHHHHHHHHHHhccCCcEE
Q psy2281          17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNE-TDHLTREAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide-~d~l~~~~~~~l~~~i~~~~~~~~~   93 (287)
                      ++...++..++..+..|+.  =+++||||+||||++-+|++...+.  -+++|+ .|.........-+..++.-+|.+.+
T Consensus        15 F~GF~Aln~ls~~v~~Gel--r~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV   92 (249)
T COG4674          15 FGGFKALNDLSFSVDPGEL--RVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV   92 (249)
T ss_pred             EcceeeeeeeEEEecCCeE--EEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence            4455666777777788988  8999999999999999999998877  777887 5533322233445668888888888


Q ss_pred             EEEeCCCCCCcHHHhccccee--ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCI--RIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +...++.+|+..+.+..-.++  -|...+ .+-+.++..++...|+  .+......+.+|.|+.|.     .+...|+++
T Consensus        93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~-~~e~~ride~La~igL--~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lL  169 (249)
T COG4674          93 FENLTVRENLELALNRDKSVFASLFARLR-AEERRRIDELLATIGL--GDERDRLAALLSHGQKQWLEIGMLLAQDPKLL  169 (249)
T ss_pred             hhhccHHHHHHHHhcCCcchHHHhhhhcC-hhHHHHHHHHHHHccc--chhhhhhhhhhccchhhhhhhheeeccCCcEE
Confidence            888888888766554322111  122222 2344567777777787  778888888999999888     677788999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++|||+.++........-+++..++..   +++.||+..+..+.+++-.
T Consensus       170 LlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTV  218 (249)
T COG4674         170 LLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTV  218 (249)
T ss_pred             EecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEE
Confidence            999999998877666777788888766   6799999999999887653

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.56  E-value=2.8e-17  Score=138.71  Aligned_cols=188  Identities=13%  Similarity=0.036  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHH-HHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRR-TMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~-~i~~~~~~~~~i~~   96 (287)
                      +++.++..+.+|+.  ++|.||||+|||||+++|++..  .+.  -|.+|+.+.-... .....+ .+.+++++..++..
T Consensus        22 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~-~~~~~~~~~~~~~q~~~~~~~   98 (252)
T CHL00131         22 ILKGLNLSINKGEI--HAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE-PEERAHLGIFLAFQYPIEIPG   98 (252)
T ss_pred             eeecceeEEcCCcE--EEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-hhhhheeeEEEEecccccccc
Confidence            55666666788999  9999999999999999999962  222  6777875421111 111111 12233333322221


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA-QQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      .+..+++................+..+....+...++..++. +....+.+. .+|+|+.||     |+...|.++++||
T Consensus        99 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE  177 (252)
T CHL00131         99 VSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMD-PSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDE  177 (252)
T ss_pred             ccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCc-hhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence            122222211111000000011122334455667777777773 123345555 499999888     7777789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l  213 (287)
                      |++++|......+.+.+.++.+.    |+++|+...+..+ +++++.+
T Consensus       178 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l  225 (252)
T CHL00131        178 TDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVM  225 (252)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEE
Confidence            99999999999888888888653    7899999888776 6776544

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.56  E-value=1.3e-16  Score=147.68  Aligned_cols=182  Identities=16%  Similarity=0.094  Sum_probs=122.7

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCc---EEEE
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTC---RLIL   95 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~---~~i~   95 (287)
                      ++.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+.  ....  ...++.+.+++++.   .++.
T Consensus       279 l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~--~~~~~~i~~v~q~~~~~~l~~  354 (510)
T PRK15439        279 FRNISLEVRAGEI--LGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA--QRLARGLVYLPEDRQSSGLYL  354 (510)
T ss_pred             ccceeEEEcCCcE--EEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHH--HHHhCCcEECCCChhhCCccC
Confidence            3445555578888  9999999999999999999987654  677776432  2221  12233466666542   1222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++......+.   .+. .......+.+..+++..++. .+...+.+.++|+|+.||     |+..-+.++++||
T Consensus       355 ~~t~~~~l~~~~~~~~---~~~-~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDE  429 (510)
T PRK15439        355 DAPLAWNVCALTHNRR---GFW-IKPARENAVLERYRRALNIK-FNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDE  429 (510)
T ss_pred             CCcHHHHHHhhhhhhh---ccc-cChHHHHHHHHHHHHHcCCC-CCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECC
Confidence            2222233321101100   010 11223345567778888873 134566788999999998     6667789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|......+.+.+.++.+.    |+++|+.+.+..++|+++.+
T Consensus       430 Pt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l  476 (510)
T PRK15439        430 PTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVM  476 (510)
T ss_pred             CCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEE
Confidence            99999999999999999988764    78999999999999988755

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=2.4e-16  Score=133.52  Aligned_cols=181  Identities=13%  Similarity=0.093  Sum_probs=125.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +++.++..+.+|++  ++|.||||+|||||+++|++.+.+     .  .|.+|+.+.... .....+++.+.+++++..+
T Consensus        23 ~l~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~  100 (261)
T PRK14263         23 AVRDSHVPIRKNEI--TGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP  100 (261)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence            44555666688999  999999999999999999998753     1  778887653211 1122345567777777654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      + ..+..+++.....       +... ..+....+...++..++.  +.........++|+|+.|+     |+...+.++
T Consensus       101 ~-~~tv~enl~~~~~-------~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~ll  171 (261)
T PRK14263        101 F-SMSIFDNVAFGLR-------LNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVL  171 (261)
T ss_pred             c-cccHHHHHHHHHh-------hcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            4 3455555544322       1111 123345666777777762  1112223456799999888     666778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+.+.+..++|+++.+
T Consensus       172 llDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l  221 (261)
T PRK14263        172 LLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFF  221 (261)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999998888888888543   77999999999998987654

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.56  E-value=6.9e-17  Score=134.87  Aligned_cols=180  Identities=15%  Similarity=0.092  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++..++. .+.
T Consensus        17 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv   92 (234)
T cd03251          17 VLRDISLDIPAGET--VALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDV-RDYTLASLRRQIGLVSQDVFLFN-DTV   92 (234)
T ss_pred             ceeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEh-hhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence            44555556688988  9999999999999999999998654  677776432 11112334566777777765442 344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHH-----HHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSV-----LTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+++....         ......+....     +.+.++.....+.......+..+|+|+.|+     |+...|+++++|
T Consensus        93 ~enl~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD  163 (234)
T cd03251          93 AENIAYGR---------PGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD  163 (234)
T ss_pred             HHHhhccC---------CCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            34432210         11122222221     222233221111222334466899999888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      ||++++|......+.+.+.++.+.   ++++|+...+.. +++++.+-.
T Consensus       164 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~  211 (234)
T cd03251         164 EATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLED  211 (234)
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecC
Confidence            999999999988888888877543   778999988866 887765533

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.56  E-value=2.1e-17  Score=137.29  Aligned_cols=177  Identities=12%  Similarity=0.080  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. ........++.+.+++++..++. .+.
T Consensus        29 ~l~~is~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~l~~-~tv  104 (226)
T cd03248          29 VLQDVSFTLHPGEV--TALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPI-SQYEHKYLHSKVSLVGQEPVLFA-RSL  104 (226)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCch-HHcCHHHHHhhEEEEecccHHHh-hhH
Confidence            55666666688999  9999999999999999999987654  677887542 11112233445666666543322 233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHH-----HHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIV-----SVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+++..+         +......+..     ..+...++.....+.......+.++|+|+.|+     ++..-|.++++|
T Consensus       105 ~~nl~~~---------~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  175 (226)
T cd03248         105 QDNIAYG---------LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILD  175 (226)
T ss_pred             HHHhccc---------cCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            3333211         1111111111     12344455552122444556678899999888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~  212 (287)
                      ||++++|......+.+.+.++.+.   ++++|+...+.. +++++.
T Consensus       176 EPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~  220 (226)
T cd03248         176 EATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER-ADQILV  220 (226)
T ss_pred             CCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEE
Confidence            999999999988888888877543   778999888754 666543

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=2.1e-16  Score=137.69  Aligned_cols=183  Identities=16%  Similarity=0.113  Sum_probs=129.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------CEEEEeCCCCCCHH-HHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-------PVIILNETDHLTRE-AQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~   93 (287)
                      +++.++..+.+|+.  ++|.||+|||||||+++|++....       ..|.+|+.+..... ....+++.+.++++.+.+
T Consensus        97 ~L~~is~~I~~Ge~--v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~  174 (329)
T PRK14257         97 VLHDLNLDIKRNKV--TAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP  174 (329)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence            45555556688888  999999999999999999998742       27888987642111 123456678888887654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHH-HHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEE-IVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~-~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      + ..+..+|+..+..       +...+.++ ..+.....++..++.  +.....+....+|+|+.||     |+..-+.+
T Consensus       175 ~-~~ti~eNi~~~~~-------~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~I  246 (329)
T PRK14257        175 F-EMSIFDNVAYGPR-------NNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEV  246 (329)
T ss_pred             C-CCcHHHHHHhHHH-------hcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCE
Confidence            3 3455566653221       22233333 333455666666652  2334456677899999888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++|||++++|..+...+.+.+.++.+.   ++++|+...+..++|+++.+-
T Consensus       247 lLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~  298 (329)
T PRK14257        247 LLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFY  298 (329)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            9999999999998888888888887654   779999999999999887553

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=3.7e-16  Score=131.75  Aligned_cols=183  Identities=15%  Similarity=0.087  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C---C--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G---P--VIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~---~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...  +   .  -|.+|+.+.... .....+++.+.+++++..+
T Consensus        18 ~l~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~   95 (250)
T PRK14266         18 ILKNVNLDIPKNSV--TALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNP   95 (250)
T ss_pred             EEeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCcc
Confidence            44555556678888  99999999999999999999753  1   2  677888653211 1123456678888877655


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +.. +..+++......      ....+.+...+.+...++..++.  +.+........+|+|+.|+     |+..-++++
T Consensus        96 ~~~-t~~~nl~~~~~~------~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  168 (250)
T PRK14266         96 FPK-SIFDNVAYGLRI------HGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVI  168 (250)
T ss_pred             Ccc-hHHHHHHhHHhh------cCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence            442 455555433221      11123344566777777777762  1222234456799998888     777778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       169 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l  218 (250)
T PRK14266        169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFF  218 (250)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEE
Confidence            999999999999888888888887543   77999999999988876543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.56  E-value=6.9e-14  Score=134.27  Aligned_cols=162  Identities=17%  Similarity=0.197  Sum_probs=125.0

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----------CC----------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----------GP----------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------~~----------   62 (287)
                      ++.++.||..+++++|+++.+..+-..+..+..++++|+||||+|||++++.++..+.          ..          
T Consensus       171 ~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~  250 (731)
T TIGR02639       171 DLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLL  250 (731)
T ss_pred             hHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHh
Confidence            3567789999999999999888888888777777899999999999999999998751          00          


Q ss_pred             --------------------------EEEEeCCCCCCH---------HHHHHHHHHHHhccCCcEEEEEeCCCC-----C
Q psy2281          63 --------------------------VIILNETDHLTR---------EAQQALRRTMEKYITTCRLILCANSMS-----Q  102 (287)
Q Consensus        63 --------------------------~i~ide~d~l~~---------~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~  102 (287)
                                                ++||||+|.+..         +.++.|...++.  ....+|.++|..+     .
T Consensus       251 a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~IgaTt~~e~~~~~~  328 (731)
T TIGR02639       251 AGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGSTTYEEYKNHFE  328 (731)
T ss_pred             hhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEecCHHHHHHHhh
Confidence                                      999999997642         235556666652  2345555555422     3


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHHh
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNL------RRAILMCEASK  166 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~------r~al~~l~~~~  166 (287)
                      ..+++.+||+.+.++.|+.++..++++.....    .++.++++++..++++|.+-+      .+|+..++..+
T Consensus       329 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~  402 (731)
T TIGR02639       329 KDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAG  402 (731)
T ss_pred             hhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhh
Confidence            68899999999999999999999999977665    356789999999999987643      34777776544

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.56  E-value=4.4e-16  Score=131.34  Aligned_cols=184  Identities=15%  Similarity=0.092  Sum_probs=124.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--C-----CEEEEeCCCCCCH-HHHHHHHHHHHhccCCcEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--G-----PVIILNETDHLTR-EAQQALRRTMEKYITTCRL   93 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~-----~~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~   93 (287)
                      +++.++..+.+|+.  ++|.||||+|||||+++|++...  +     .-|.+++.+.... .....+++.+.+++++..+
T Consensus        20 ~l~~is~~i~~Ge~--~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~   97 (251)
T PRK14244         20 ILFDINLDIYKREV--TAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP   97 (251)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence            45556666688988  99999999999999999999864  1     1677777542111 0112345567777777654


Q ss_pred             EEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          94 ILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI--PPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        94 i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +.. +..+++......+    .+ .....+....+...++..++.-  ..........+|+|+.|+     ++...+.++
T Consensus        98 ~~~-tv~~ni~~~~~~~----~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~ll  171 (251)
T PRK14244         98 FPK-SIYDNVAYGPKLH----GL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTML  171 (251)
T ss_pred             ccC-CHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            442 4445543321100    01 1123344455667778777731  112344577899999888     666678899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.   ++++|+...+..++++++.+
T Consensus       172 llDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l  221 (251)
T PRK14244        172 LMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFF  221 (251)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEE
Confidence            999999999999888888888887532   77999999999988987655

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.56  E-value=1.9e-16  Score=135.02  Aligned_cols=179  Identities=12%  Similarity=0.028  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE--Ee
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLIL--CA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~--~~   97 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+|+.+. ..   ....+.+.+++++..+..  ..
T Consensus        22 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i-~~---~~~~~~i~~v~q~~~~~~~~~~   95 (272)
T PRK15056         22 ALRDASFTVPGGSI--AALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-RQ---ALQKNLVAYVPQSEEVDWSFPV   95 (272)
T ss_pred             EEEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEh-HH---hhccceEEEeccccccccCCCc
Confidence            34455556678988  9999999999999999999987654  677887552 11   111123555555543211  11


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++..+...+...  +. .........+...++..|+  .+...+.+.++|+|+.|+     |+...|.++++|||+
T Consensus        96 ~~~~~i~~~~~~~~~~--~~-~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt  170 (272)
T PRK15056         96 LVEDVVMMGRYGHMGW--LR-RAKKRDRQIVTAALARVDM--VEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPF  170 (272)
T ss_pred             chhhheeccccccccc--cc-CCCHHHHHHHHHHHHHcCC--hhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            1222222111000000  11 1112233455666777777  455566778899999888     666778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      +++|+.....+.+.+.++.+.    ++++|+...+...+++++
T Consensus       171 ~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~  213 (272)
T PRK15056        171 TGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTV  213 (272)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence            999999999999999888653    779999999999988864

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.56  E-value=6.8e-17  Score=137.35  Aligned_cols=183  Identities=16%  Similarity=0.156  Sum_probs=126.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      +++.++..+++|+.  +.|+||+|+|||||+++|++.+... .|++|+.+. ..-....+++.+.+++++..++. .+..
T Consensus        19 ~l~~isl~I~~Ge~--~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i-~~~~~~~lr~~i~~v~q~~~lf~-~tv~   94 (275)
T cd03289          19 VLENISFSISPGQR--VGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSW-NSVPLQKWRKAFGVIPQKVFIFS-GTFR   94 (275)
T ss_pred             ceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEh-hhCCHHHHhhhEEEECCCcccch-hhHH
Confidence            45666677789999  9999999999999999999998633 788898763 22123456677888888765543 3444


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----------HcCCcHHH-----HHHHHHH
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ-----------QSDRNLRR-----AILMCEA  164 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-----------~s~G~~r~-----al~~l~~  164 (287)
                      +++.+          +...+.++    +.+.++..|+  .+.....+..           +|+|+.|+     |+..-++
T Consensus        95 ~nl~~----------~~~~~~~~----~~~~l~~~gL--~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~  158 (275)
T cd03289          95 KNLDP----------YGKWSDEE----IWKVAEEVGL--KSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK  158 (275)
T ss_pred             HHhhh----------ccCCCHHH----HHHHHHHcCC--HHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence            55432          22233333    3344555566  3444444444           89998887     7777789


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      ++++|||++++|......+.+.+.++...   |+++|+.+.+.. +|+++.+-.+++    +|++++.
T Consensus       159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCCHHHHhh
Confidence            99999999999999888888877776433   778999987765 888765533322    5566655

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PLN03211 ABC transporter G-25; Provisional

Probab=99.56  E-value=6.6e-17  Score=152.80  Aligned_cols=180  Identities=17%  Similarity=0.172  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      .+.+.++..+++|+.  ++|.||||+|||||+++|++...+.    .|.+|+.+. +.    ..++.+.+++|+..++..
T Consensus        82 ~iL~~vs~~i~~Ge~--~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~-~~----~~~~~i~yv~Q~~~l~~~  154 (659)
T PLN03211         82 TILNGVTGMASPGEI--LAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKP-TK----QILKRTGFVTQDDILYPH  154 (659)
T ss_pred             eeeeCCEEEEECCEE--EEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEEC-ch----hhccceEEECcccccCCc
Confidence            345555556688888  9999999999999999999987542    678888653 21    123457777877666655


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-----HHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-----ALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      .++.+++.....-|.    -...+.++..+.+..+++..|+  ++..     .+....+|+|+.||     ++...|.++
T Consensus       155 lTV~E~l~~~a~~~~----~~~~~~~~~~~~v~~~l~~lgL--~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL  228 (659)
T PLN03211        155 LTVRETLVFCSLLRL----PKSLTKQEKILVAESVISELGL--TKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL  228 (659)
T ss_pred             CCHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHHHcCC--hhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence            566666654322111    0123455666778888888887  3322     12345799999998     677778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~l  213 (287)
                      ++|||++++|......+.+.+.++.+.    ++++|++. .+.+.+|+++.+
T Consensus       229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL  280 (659)
T PLN03211        229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVL  280 (659)
T ss_pred             EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEe
Confidence            999999999999999999999988754    77899987 577888887644

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=5e-16  Score=139.45  Aligned_cols=179  Identities=20%  Similarity=0.198  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .....++..+++|+.  +.|+|+|||||||+++++++...+.  .|.+++.+. ..-....+++.+.+++|++. ++..|
T Consensus       335 ~~l~~l~~t~~~g~~--talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l-~~l~~~~~~k~i~~v~Q~p~-lf~gT  410 (559)
T COG4988         335 PALSDLNLTIKAGQL--TALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDL-RDLSPEAWRKQISWVSQNPY-LFAGT  410 (559)
T ss_pred             cccCCceeEecCCcE--EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccc-cccCHHHHHhHeeeeCCCCc-ccccc
Confidence            456677777788888  9999999999999999999998865  899998874 23335678899999998874 55567


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH----HcCCcHHH-----HHHHHHHHhhcC
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ----QSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~----~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      ..+|+..+         -+..+++++.+.+++.--.+-+.-++.....+.+    +|+|+.||     |+..-..++++|
T Consensus       411 ireNi~l~---------~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD  481 (559)
T COG4988         411 IRENILLA---------RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD  481 (559)
T ss_pred             HHHHhhcc---------CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence            77777542         1225677777777654222212111122223444    89999888     444445688899


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |||+.+|..+...+.+.+.++.++   ++.+|....+.. +|+++.+
T Consensus       482 EpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vl  527 (559)
T COG4988         482 EPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVL  527 (559)
T ss_pred             CCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEe
Confidence            999999999988888888888877   789999887776 4666544

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.55  E-value=1.8e-13  Score=117.39  Aligned_cols=102  Identities=25%  Similarity=0.303  Sum_probs=76.5

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC------------CCCcHHHhcccceeecCCCCHHHHHHHHHH
Q psy2281          63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM------------SQVIPAIRSRCLCIRIPAPTHEEIVSVLTN  130 (287)
Q Consensus        63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~------------~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~  130 (287)
                      ++||||+|.+.-+....|.+.+|... .+.+++++|..            ..++..+.+||.+++-.+++.+++.+++.-
T Consensus       281 VLFIDEvHmLDiEcFsfLnralEs~~-sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~i  359 (398)
T PF06068_consen  281 VLFIDEVHMLDIECFSFLNRALESEL-SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKI  359 (398)
T ss_dssp             EEEEESGGGSBHHHHHHHHHHHTSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHH
T ss_pred             eEEecchhhccHHHHHHHHHHhcCCC-CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHh
Confidence            99999999999999999999999754 35567776632            237778999999999999999999999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHH
Q psy2281         131 ICKKEGLTIPPEFALRLAQQS-DRNLRRAILMCEAS  165 (287)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~s-~G~~r~al~~l~~~  165 (287)
                      .++.+++.+++++++.+.... ...+|-|+.++...
T Consensus       360 R~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a  395 (398)
T PF06068_consen  360 RAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA  395 (398)
T ss_dssp             HHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred             hhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence            999999999999999998764 45689898887654

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.55  E-value=1.1e-16  Score=147.60  Aligned_cols=187  Identities=15%  Similarity=0.098  Sum_probs=123.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE---EEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR---LILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~---~i~~   96 (287)
                      +.+.++..+..|++  +.|.||||||||||+++|++...+.  .|.+++.+.-.......+++.+.++++...   ++..
T Consensus       263 ~l~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~  340 (491)
T PRK10982        263 SIRDVSFDLHKGEI--LGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY  340 (491)
T ss_pred             ccceeeEEEeCCcE--EEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence            34455555588999  9999999999999999999987654  677887542111112233444566655432   2221


Q ss_pred             eCCCCCCcHH-HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          97 ANSMSQVIPA-IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        97 ~~~~~~l~~~-l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      .+..++.... +......  +...+.....+.+...++..++. .+...+.+.++|+|+.||     ++...|.++++||
T Consensus       341 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDE  417 (491)
T PRK10982        341 LDIGFNSLISNIRNYKNK--VGLLDNSRMKSDTQWVIDSMRVK-TPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDE  417 (491)
T ss_pred             CcHHHheehhhhhhhccc--ccccCcHHHHHHHHHHHHhcCcc-CCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcC
Confidence            1111111111 1100000  11112334455666777777763 123567788999999999     6666789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|......+.+.+.++.+.    ++++|+.+.+..++|+++.+
T Consensus       418 Pt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l  464 (491)
T PRK10982        418 PTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVM  464 (491)
T ss_pred             CCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEE
Confidence            99999999999999999888765    78999999999999988755

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.55  E-value=2.6e-16  Score=148.33  Aligned_cols=179  Identities=18%  Similarity=0.122  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..++.|+.  +.++|+||||||||+|.+.+...+.  -|.+|+.| ++.-....+|+.+++++|+.. ++..+
T Consensus       487 ~vL~~isL~I~~Ge~--vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~d-l~~i~~~~lR~~ig~V~Q~~~-Lf~gS  562 (709)
T COG2274         487 PVLEDLSLEIPPGEK--VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD-LNDIDLASLRRQVGYVLQDPF-LFSGS  562 (709)
T ss_pred             chhhceeEEeCCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEe-HHhcCHHHHHhheeEEcccch-hhcCc
Confidence            467777777899999  9999999999999999999998876  89999988 444456789999999999874 55567


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHH-----HHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC-----KKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      ..+|+...         -+..+.+++.+.++...     ...-..++...-+.=+.+|||+.||     |+...|+++++
T Consensus       563 I~eNi~l~---------~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlL  633 (709)
T COG2274         563 IRENIALG---------NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLL  633 (709)
T ss_pred             HHHHHhcC---------CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEE
Confidence            77776542         12234455554443321     1111111222233334588998877     77778999999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||||+++|..+.+.+.+.+.++...   |+.+|....+.. +|+++.+
T Consensus       634 DEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~-adrIiVl  680 (709)
T COG2274         634 DEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS-ADRIIVL  680 (709)
T ss_pred             eCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh-ccEEEEc
Confidence            9999999999998888888888743   778998877765 5776644

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.55  E-value=6.3e-16  Score=125.44  Aligned_cols=159  Identities=11%  Similarity=-0.060  Sum_probs=105.0

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                      ++..+++|+.  ++|.||||+|||||++++++...+.  .+.+|+.+... ..    .+.+.+.++...+.+..+..+++
T Consensus        19 vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~-~~----~~~~~~~~~~~~~~~~~tv~~~l   91 (195)
T PRK13541         19 LSITFLPSAI--TYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINN-IA----KPYCTYIGHNLGLKLEMTVFENL   91 (195)
T ss_pred             EEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccCh-hh----hhhEEeccCCcCCCccCCHHHHH
Confidence            3344468888  9999999999999999999987655  77888765321 11    12234444443333333444444


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCc
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQI  178 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~  178 (287)
                      .....       +.. .    .+.+...++..++  ++...+...++|+|+.++     |+..-+.++++|||++++|+.
T Consensus        92 ~~~~~-------~~~-~----~~~~~~~l~~~~l--~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~  157 (195)
T PRK13541         92 KFWSE-------IYN-S----AETLYAAIHYFKL--HDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKE  157 (195)
T ss_pred             HHHHH-------hcc-c----HHHHHHHHHHcCC--HhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence            22111       111 1    2234455666666  455566788999999888     666678999999999999998


Q ss_pred             cCccHHHHHHHHHHH----HHhccChhHHHH
Q psy2281         179 VEPDWKIYIRDTAKL----IISEQSPKKLLE  205 (287)
Q Consensus       179 ~~~~~~~~i~~l~~~----i~~~~~~~~~~~  205 (287)
                      ....+.+.+.+..+.    ++++|+...+..
T Consensus       158 ~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~  188 (195)
T PRK13541        158 NRDLLNNLIVMKANSGGIVLLSSHLESSIKS  188 (195)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCccccch
Confidence            888887777654433    678888776655

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.55  E-value=8.9e-14  Score=134.63  Aligned_cols=161  Identities=16%  Similarity=0.267  Sum_probs=122.4

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----CC-----------------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----GP-----------------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----~~-----------------   62 (287)
                      .+++.||..++.++|+.+.+..+-.++..+..++.+|+||||+|||++++.++..+.    +.                 
T Consensus       177 L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a  256 (852)
T TIGR03345       177 LTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA  256 (852)
T ss_pred             HHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc
Confidence            356789999999999999888887777777777899999999999999999998652    10                 


Q ss_pred             --------------------------EEEEeCCCCCCH-----HHH---HHHHHHHHhccCCcEEEEEeCCCC-----CC
Q psy2281          63 --------------------------VIILNETDHLTR-----EAQ---QALRRTMEKYITTCRLILCANSMS-----QV  103 (287)
Q Consensus        63 --------------------------~i~ide~d~l~~-----~~~---~~l~~~i~~~~~~~~~i~~~~~~~-----~l  103 (287)
                                                ++||||+|.+..     ..+   +.|...++.  ....+|.++|..+     .+
T Consensus       257 g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~  334 (852)
T TIGR03345       257 GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKKYFEK  334 (852)
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhhhhhc
Confidence                                      899999998753     112   235555552  2345555555432     27


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHHH------HHHHHHHHh
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNLRR------AILMCEASK  166 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~r~------al~~l~~~~  166 (287)
                      .+++.+||+.+.++.|+.++...++..+...    .++.++++++..++++|.+-+..      |+..++..+
T Consensus       335 d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~  407 (852)
T TIGR03345       335 DPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTAC  407 (852)
T ss_pred             cHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHH
Confidence            8899999999999999999999997655543    46788999999999999765443      777776543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.55  E-value=4.4e-17  Score=141.03  Aligned_cols=188  Identities=12%  Similarity=0.082  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHLTRE-AQQALRRTMEKYITTCR   92 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~   92 (287)
                      .+++.++..+..|++  ++|.||||+|||||+++|++...+     .  .|.+++.+..... ....+++.+.+++++..
T Consensus        59 ~iL~~is~~i~~Ge~--~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~  136 (305)
T PRK14264         59 HALKGVSMDIPEKSV--TALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN  136 (305)
T ss_pred             eeeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc
Confidence            345555666688998  999999999999999999998741     2  7778875421111 12334556777777765


Q ss_pred             EEEEeCCCCCCcHHHhcccc-----eeecCCCC-HHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HH
Q psy2281          93 LILCANSMSQVIPAIRSRCL-----CIRIPAPT-HEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AI  159 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~-----~~~~~~~~-~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al  159 (287)
                      ++. .+..+++..+...+..     .......+ .+...+.+...++..++.  +.+.....+.++|+|+.||     |+
T Consensus       137 l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL  215 (305)
T PRK14264        137 PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCL  215 (305)
T ss_pred             ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHH
Confidence            443 3555555443221100     00000111 223345566677766662  1233345567899999888     67


Q ss_pred             HHHHHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281         160 LMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       160 ~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~  211 (287)
                      ..-++++++|||++++|......+.+.+.++.+.   |+++|+...+..++++++
T Consensus       216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~  270 (305)
T PRK14264        216 AVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTA  270 (305)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE
Confidence            7778999999999999999888888888887654   779999999999999753

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.54  E-value=7.4e-17  Score=128.33  Aligned_cols=142  Identities=18%  Similarity=0.144  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||++++++...+.  .|.+++.+.....  ..+++.+.+++++..       
T Consensus        15 ~l~~~~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~i~~~~q~~~-------   83 (173)
T cd03230          15 ALDDISLTVEKGEI--YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP--EEVKRRIGYLPEEPS-------   83 (173)
T ss_pred             eeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch--HhhhccEEEEecCCc-------
Confidence            34455555678888  9999999999999999999987654  6777775421111  112222233232211       


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                         +            |...+-.+..      .                 +|+|+.||     |+...|.++++|||+++
T Consensus        84 ---~------------~~~~tv~~~~------~-----------------LS~G~~qrv~laral~~~p~illlDEPt~~  125 (173)
T cd03230          84 ---L------------YENLTVRENL------K-----------------LSGGMKQRLALAQALLHDPELLILDEPTSG  125 (173)
T ss_pred             ---c------------ccCCcHHHHh------h-----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence               1            1111111110      0                 67777666     78888999999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~  212 (287)
                      +|......+.+.+.++.++    ++++|+...+...+++++.
T Consensus       126 LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~  167 (173)
T cd03230         126 LDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAI  167 (173)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEE
Confidence            9999999898999888754    7789999888877776543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.54  E-value=8.4e-17  Score=148.41  Aligned_cols=185  Identities=12%  Similarity=0.077  Sum_probs=121.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe-
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---PVIILNETDHLTREAQQALRRTMEKYITTCRLILCA-   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~-   97 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+   ..|.+++.+..........++.+.+++++..+.... 
T Consensus       275 il~~vsl~i~~Ge~--~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~  352 (490)
T PRK10938        275 ILHNLSWQVNPGEH--WQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVS  352 (490)
T ss_pred             EEeeceEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccC
Confidence            45556666688999  999999999999999999997543   167777754211111122345566666654332211 


Q ss_pred             CCCCCC-cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          98 NSMSQV-IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        98 ~~~~~l-~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ....++ ..+...+...  +..... +..+.+..+++..++  ++ ...+.+.++|+|+.||     |+...|.++++||
T Consensus       353 ~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~l~~~~l--~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE  427 (490)
T PRK10938        353 TSVRNVILSGFFDSIGI--YQAVSD-RQQKLAQQWLDILGI--DKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDE  427 (490)
T ss_pred             CcHHHHHHhcccccccc--ccCCCH-HHHHHHHHHHHHcCC--chhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence            111111 1111100000  111122 234567778888887  44 4566788999999998     6667789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHH-HHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLE-VRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~-~~~~~~~l  213 (287)
                      |++++|......+.+.+.++.++     |+++|+.+.+.. ++++++.+
T Consensus       428 Pt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l  476 (490)
T PRK10938        428 PLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV  476 (490)
T ss_pred             ccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEe
Confidence            99999999999999999988653     679999998877 46766543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.53  E-value=3.1e-16  Score=146.03  Aligned_cols=160  Identities=20%  Similarity=0.216  Sum_probs=112.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.++||+||||||+++.+++...+.  .|.+|+.|. ..- ...+++.+.+++|++. ++..|.
T Consensus       350 vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i-~~~-~~~lr~~i~~V~Q~~~-lF~~TI  424 (529)
T TIGR02868       350 VLDGVSLDLPPGER--VAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSV-SSL-QDELRRRISVFAQDAH-LFDTTV  424 (529)
T ss_pred             eeecceEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEh-hhH-HHHHHhheEEEccCcc-cccccH
Confidence            45666666689999  9999999999999999999988766  889999874 444 6778899999999875 445567


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCHHHH----HHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPPEFA----LRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~----~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+|+..+         .+..+++++.+.++.    .++     .+++...    +.=..+|||+.||     |+...+.+
T Consensus       425 ~eNI~~g---------~~~~~~e~i~~al~~----a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i  491 (529)
T TIGR02868       425 RDNLRLG---------RPDATDEELWAALER----VGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI  491 (529)
T ss_pred             HHHHhcc---------CCCCCHHHHHHHHHH----cCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence            7776442         123456665555443    232     0111111    1223489998888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccC
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQS  199 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~  199 (287)
                      +++|||++++|..+...+.+.+.++.+.   ++++|.
T Consensus       492 liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr  528 (529)
T TIGR02868       492 LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH  528 (529)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence            9999999999988887777777665322   455654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.53  E-value=6.7e-16  Score=131.25  Aligned_cols=184  Identities=15%  Similarity=0.114  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----C--EEEEeCCCCC--CHH-HHHHHHHHHHhccCC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----P--VIILNETDHL--TRE-AQQALRRTMEKYITT   90 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----~--~i~ide~d~l--~~~-~~~~l~~~i~~~~~~   90 (287)
                      .+.+.++..+.+|++  ++|.||||+|||||+++|++...+     .  .|.+++.+.-  ... ....+++.+.+.+++
T Consensus        30 ~vl~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~  107 (265)
T PRK14252         30 QALKNINMMVHEKQV--TALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQK  107 (265)
T ss_pred             eeeeeeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccC
Confidence            345566666688999  999999999999999999998652     1  6777764421  111 122345556777766


Q ss_pred             cEEEEEeCCCCCCcHHHhcccceeecCCCC-HHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcHHH-----HHHHH
Q psy2281          91 CRLILCANSMSQVIPAIRSRCLCIRIPAPT-HEEIVSVLTNICKKEGLT--IPPEFALRLAQQSDRNLRR-----AILMC  162 (287)
Q Consensus        91 ~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~-~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~s~G~~r~-----al~~l  162 (287)
                      ..++.. +..+++.....       ..... .....+.+...++..++.  +.+.......++|+|+.|+     |+...
T Consensus       108 ~~~~~~-tv~eni~~~~~-------~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  179 (265)
T PRK14252        108 PNPFPK-SIFENVAYGLR-------IRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATD  179 (265)
T ss_pred             CcCCcc-hHHHHHHhHHH-------HcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence            554432 44444433221       11112 222334555566655651  1222334456799998888     66677


Q ss_pred             HHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHH
Q psy2281         163 EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       163 ~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +.++++|||++++|......+.+.+.++.+.   ++++|+.+.+..++++++.+-
T Consensus       180 p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~  234 (265)
T PRK14252        180 PEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMY  234 (265)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEE
Confidence            8999999999999999888888888887643   679999999999999887553

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.53  E-value=4.7e-16  Score=140.54  Aligned_cols=181  Identities=12%  Similarity=0.061  Sum_probs=121.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      ++..++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+..           +.   ....+....+.
T Consensus        39 IL~nVSfsI~~GEi--vgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~-----------i~---~~~~l~~~lTV  102 (549)
T PRK13545         39 ALNNISFEVPEGEI--VGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL-----------IA---ISSGLNGQLTG  102 (549)
T ss_pred             EEeeeEEEEeCCCE--EEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee-----------EE---eccccCCCCcH
Confidence            34555556688988  9999999999999999999987655  6777764310           00   00001001112


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.....       +...+.++..+.+..+++..++  .+...+.+..+|+|+.||     |+...|.++++|||+++
T Consensus       103 ~EnL~l~~~-------~~~~~~~e~~e~i~elLe~lgL--~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsg  173 (549)
T PRK13545        103 IENIELKGL-------MMGLTKEKIKEIIPEIIEFADI--GKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSV  173 (549)
T ss_pred             HHHHHhhhh-------hcCCCHHHHHHHHHHHHHHcCC--hhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence            222211100       1234455566667777777777  555667788999999888     66667899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFKYL  227 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~  227 (287)
                      +|......+.+.+.++.+.    ++++|+...+..++|+++.+-.+.    .+++++....
T Consensus       174 LD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~  234 (549)
T PRK13545        174 GDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHY  234 (549)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence            9999888888888887643    779999999999999876443222    2455555443

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.53  E-value=5.2e-16  Score=131.13  Aligned_cols=178  Identities=14%  Similarity=0.107  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----P--VIILNETDHLTREAQQALRRTMEKYITTCRLIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~   95 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+    .  .|.+++.+. +.  .....+.+.+++++....+
T Consensus        18 il~~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i-~~--~~~~~~~i~~v~q~~~~~~   92 (254)
T PRK10418         18 LVHGVSLTLQRGRV--LALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPV-AP--CALRGRKIATIMQNPRSAF   92 (254)
T ss_pred             eecceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeec-cc--cccccceEEEEecCCcccc
Confidence            45566666688999  999999999999999999999765    3  677887653 21  1111234556665542111


Q ss_pred             --EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281          96 --CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus        96 --~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                        ..+..+++.....       ......+  ...+...++..++.-.. ...+.+.++|+|+.|+     |+..-|++++
T Consensus        93 ~~~~~~~~~~~~~~~-------~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl  163 (254)
T PRK10418         93 NPLHTMHTHARETCL-------ALGKPAD--DATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFII  163 (254)
T ss_pred             CccccHHHHHHHHHH-------HcCCChH--HHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence              1111111111111       0111221  24566677777773111 2345677899999888     6667789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|......+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       164 LDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l  214 (254)
T PRK10418        164 ADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVM  214 (254)
T ss_pred             EeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEE
Confidence            99999999999888888888888653     67999999999888887654

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.53  E-value=4.8e-16  Score=130.02  Aligned_cols=178  Identities=14%  Similarity=0.087  Sum_probs=115.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++..++ ..+.
T Consensus        17 ~l~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~-~~tv   92 (237)
T cd03252          17 ILDNISLRIKPGEV--VGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDL-ALADPAWLRRQVGVVLQENVLF-NRSI   92 (237)
T ss_pred             ceeceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeeh-HhcCHHHHhhcEEEEcCCchhc-cchH
Confidence            44555556688988  9999999999999999999987654  677887552 1111223455677777776443 2344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHH-----HHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVL-----TNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+++....         ...........+     ...++.....++......+.++|+|+.|+     |+...|+++++|
T Consensus        93 ~~nl~~~~---------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  163 (237)
T cd03252          93 RDNIALAD---------PGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD  163 (237)
T ss_pred             HHHhhccC---------CCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence            44442211         111222222111     22222222122333345567899999888     677778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.   ++++|+.+.+. .+++++.+
T Consensus       164 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l  209 (237)
T cd03252         164 EATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVM  209 (237)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEE
Confidence            999999999988888888877532   77899998875 47776544

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.53  E-value=1.6e-16  Score=126.41  Aligned_cols=139  Identities=19%  Similarity=0.144  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++...+.  .|.+++.+.-. .....+++.+.+++++..++. .+.
T Consensus        17 ~l~~~~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~i~~~~q~~~~~~-~tv   92 (173)
T cd03246          17 VLRNVSFSIEPGES--LAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQ-WDPNELGDHVGYLPQDDELFS-GSI   92 (173)
T ss_pred             ceeeeEEEECCCCE--EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEccc-CCHHHHHhheEEECCCCcccc-CcH
Confidence            34455555678888  9999999999999999999987654  67777754211 111223333444333321110 000


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .++                         +                     +|+|+.||     |+...+.++++|||+++
T Consensus        93 ~~~-------------------------l---------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~  126 (173)
T cd03246          93 AEN-------------------------I---------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH  126 (173)
T ss_pred             HHH-------------------------C---------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            000                         0                     67776666     77778899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      +|......+.+.+.++.++    ++++|+...+ ..+++++
T Consensus       127 LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~  166 (173)
T cd03246         127 LDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRIL  166 (173)
T ss_pred             cCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEE
Confidence            9999999888888888653    7789998766 4566554

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>KOG0058|consensus

Probab=99.53  E-value=1.7e-15  Score=138.80  Aligned_cols=173  Identities=15%  Similarity=0.076  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..++.|+.  ++++||+|+||||++..+.+...|.  .|.+|+.|.- .-....+++.++.+.|++. .+.++
T Consensus       482 ~Vlk~lsfti~pGe~--vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~-~~~~~~lr~~Ig~V~QEPv-LFs~s  557 (716)
T KOG0058|consen  482 PVLKNLSFTIRPGEV--VALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPIS-DINHKYLRRKIGLVGQEPV-LFSGS  557 (716)
T ss_pred             hhhcCceeeeCCCCE--EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehh-hcCHHHHHHHeeeeeccce-eeccc
Confidence            367788888899999  9999999999999999999988877  9999999843 2235678899999999885 56678


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHH-----HhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK-----KEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      ..+||..+         ....+.+++....+..-.     ...-.++..+-++=.++|||+.||     |+...|.++++
T Consensus       558 I~eNI~YG---------~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLIL  628 (716)
T KOG0058|consen  558 IRENIAYG---------LDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLIL  628 (716)
T ss_pred             HHHHHhcC---------CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEE
Confidence            88998776         336677777765554211     111112233334444688888887     88888999999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEV  206 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~  206 (287)
                      ||.|+++|..+...+.+.+.++.+.   +++.|....++..
T Consensus       629 DEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~A  669 (716)
T KOG0058|consen  629 DEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHA  669 (716)
T ss_pred             echhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhc
Confidence            9999999988877777777766655   6677777777664

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.52  E-value=1.4e-13  Score=123.35  Aligned_cols=159  Identities=18%  Similarity=0.287  Sum_probs=109.3

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHh-----------cCC-CC-cEEEeCCCCCcHHHHHHHHHHHhCCC-------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK-----------EGD-FP-HLLFYGPSGAGKKTRIMALLKELYGP-------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~-~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~-------   62 (287)
                      ++++++.+.+++++.|....++.+...+.           -|- .| +++|+||||||||++++++++.+...       
T Consensus       172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s  251 (438)
T PTZ00361        172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS  251 (438)
T ss_pred             cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc
Confidence            57788888999999998888887777662           121 22 29999999999999999999876533       


Q ss_pred             ---------------------------EEEEeCCCCCCH-----------HHHHHHHHH---HHhc--cCCcEEEEEeCC
Q psy2281          63 ---------------------------VIILNETDHLTR-----------EAQQALRRT---MEKY--ITTCRLILCANS   99 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~~-----------~~~~~l~~~---i~~~--~~~~~~i~~~~~   99 (287)
                                                 +++|||+|.+..           +.+..+...   ++..  ..+..+|.++|.
T Consensus       252 eL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr  331 (438)
T PTZ00361        252 ELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNR  331 (438)
T ss_pred             hhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCC
Confidence                                       799999886521           123333333   3322  234567777777


Q ss_pred             CCCCcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHHHHHHH
Q psy2281         100 MSQVIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRRAILMC  162 (287)
Q Consensus       100 ~~~l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~al~~l  162 (287)
                      .+.+.+++.+  |+ ..+.|+.|+.++..+++...+.+..+. ++.....++    .+|+.|++..+...
T Consensus       332 ~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA  400 (438)
T PTZ00361        332 IESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEA  400 (438)
T ss_pred             hHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence            8888888864  66 468999999999999999887766553 111233333    45666666654443

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.52  E-value=4.1e-16  Score=129.00  Aligned_cols=172  Identities=17%  Similarity=0.166  Sum_probs=112.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++..++. .+.
T Consensus        19 ~l~~i~~~i~~G~~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv   94 (220)
T cd03245          19 ALDNVSLTIRAGEK--VAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDI-RQLDPADLRRNIGYVPQDVTLFY-GTL   94 (220)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEh-HHCCHHHHHhhEEEeCCCCcccc-chH
Confidence            45556666688998  9999999999999999999987644  677776442 11111223455667777654433 233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH-----------HHHHcCCcHHH-----HHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-----------LAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------l~~~s~G~~r~-----al~~l~  163 (287)
                      .+++...         ......+    .+...++..++  .+.....           +.++|+|+.||     |+...|
T Consensus        95 ~e~l~~~---------~~~~~~~----~~~~~l~~~~l--~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p  159 (220)
T cd03245          95 RDNITLG---------APLADDE----RILRAAELAGV--TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP  159 (220)
T ss_pred             HHHhhcC---------CCCCCHH----HHHHHHHHcCc--HHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence            3332111         0111222    23344555555  3322222           35899999888     666678


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .++++|||++++|......+.+.+.++.+.   ++++|+.+.. ..+++++.+
T Consensus       160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l  211 (220)
T cd03245         160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVM  211 (220)
T ss_pred             CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEE
Confidence            999999999999999998888888887653   6789998865 577766543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.52  E-value=6.8e-16  Score=145.67  Aligned_cols=179  Identities=17%  Similarity=0.143  Sum_probs=133.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      +++.++..+++|+.  ++|.||||+|||||+++|++...+.     .|.+++.+. +.   ..+++.+.+++|+..++..
T Consensus        40 iL~~vs~~i~~Ge~--~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~-~~---~~~~~~i~yv~Q~~~~~~~  113 (617)
T TIGR00955        40 LLKNVSGVAKPGEL--LAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPI-DA---KEMRAISAYVQQDDLFIPT  113 (617)
T ss_pred             cccCCEEEEeCCeE--EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC-CH---HHHhhhceeeccccccCcc
Confidence            44455555578888  9999999999999999999987542     588888653 22   3456778888888777767


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH------HHcCCcHHH-----HHHHHHHH
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA------QQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~------~~s~G~~r~-----al~~l~~~  165 (287)
                      .|+.+++..+..-|.    -...+.++..+.+...++..|+  ++.....+.      .+|+|+.||     ++...|.+
T Consensus       114 lTV~e~l~f~~~~~~----~~~~~~~~~~~~v~~~l~~lgL--~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v  187 (617)
T TIGR00955       114 LTVREHLMFQAHLRM----PRRVTKKEKRERVDEVLQALGL--RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL  187 (617)
T ss_pred             CcHHHHHHHHHhcCC----CCCCCHHHHHHHHHHHHHHcCc--hhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE
Confidence            788888766543221    0123556777788888888887  333334443      499999998     67777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYE  212 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~  212 (287)
                      +++|||++++|......+.+.++++.+.    ++++|++. ++...+|++.-
T Consensus       188 lllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l  239 (617)
T TIGR00955       188 LFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL  239 (617)
T ss_pred             EEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE
Confidence            9999999999999999999999988764    67888884 67788888763

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.52  E-value=3.4e-16  Score=125.14  Aligned_cols=145  Identities=18%  Similarity=0.213  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEEEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE-AQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||++++++...+.  .|.+++.+.-... .....++.+.+.+++..++.   
T Consensus        15 ~l~~i~~~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~---   89 (178)
T cd03229          15 VLNDVSLNIEAGEI--VALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP---   89 (178)
T ss_pred             EEeeeeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCC---
Confidence            34455566688888  9999999999999999999987654  6777775421110 01122222333332211110   


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                                         ..+-.+..          ..  .         +|+|+.||     |+...++++++|||++
T Consensus        90 -------------------~~t~~~~l----------~~--~---------lS~G~~qr~~la~al~~~p~llilDEP~~  129 (178)
T cd03229          90 -------------------HLTVLENI----------AL--G---------LSGGQQQRVALARALAMDPDVLLLDEPTS  129 (178)
T ss_pred             -------------------CCCHHHhe----------ee--c---------CCHHHHHHHHHHHHHHCCCCEEEEeCCcc
Confidence                               11110000          00  0         67777666     7777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~  211 (287)
                      ++|......+.+.+.++.++     ++++|+...+..++++++
T Consensus       130 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~  172 (178)
T cd03229         130 ALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVV  172 (178)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence            99999999999999888764     679999988887777654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.52  E-value=7.3e-16  Score=145.17  Aligned_cols=179  Identities=14%  Similarity=0.079  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|+||+|+|||||+++|++...+.  .|.+|+.+. ..-....+++.+.+++|++.+ +..|.
T Consensus       358 il~~i~l~i~~G~~--~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i-~~~~~~~~~~~i~~v~Q~~~l-f~~Ti  433 (582)
T PRK11176        358 ALRNINFKIPAGKT--VALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDL-RDYTLASLRNQVALVSQNVHL-FNDTI  433 (582)
T ss_pred             cccCceEEeCCCCE--EEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEh-hhcCHHHHHhhceEEccCcee-ecchH
Confidence            55666777788999  9999999999999999999998766  888998763 322345678889999998754 44566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+|+..+        .....+++++.+.++..     ++...-.++...-+.=.++|||+.||     |+...+.++++|
T Consensus       434 ~~Ni~~~--------~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililD  505 (582)
T PRK11176        434 ANNIAYA--------RTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD  505 (582)
T ss_pred             HHHHhcC--------CCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            6776431        01124666666555442     11110000111111113489998888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|+.+...+.+.+.++.+.   |+++|+...+. .+|+++.+
T Consensus       506 EptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l  551 (582)
T PRK11176        506 EATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVV  551 (582)
T ss_pred             CccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEE
Confidence            999999999988888888877443   77999986654 47777644

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.51  E-value=1.3e-16  Score=132.70  Aligned_cols=178  Identities=17%  Similarity=0.145  Sum_probs=111.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+..|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+.+++..++. .+.
T Consensus        18 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv   93 (229)
T cd03254          18 VLKDINFSIKPGET--VAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDI-RDISRKSLRSMIGVVLQDTFLFS-GTI   93 (229)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeH-HHcCHHHHhhhEEEecCCchhhh-hHH
Confidence            55666666788988  9999999999999999999987654  777876542 11112234455666666643322 122


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT-----NICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+++...         .......+....+.     ..++.....++......+.++|+|+.||     ++...|+++++|
T Consensus        94 ~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllD  164 (229)
T cd03254          94 MENIRLG---------RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILD  164 (229)
T ss_pred             HHHHhcc---------CCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            2222110         00112222222211     1222210011223334457899998888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.   ++++|+...+.. +++++.+
T Consensus       165 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l  210 (229)
T cd03254         165 EATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVL  210 (229)
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEE
Confidence            999999999888888888877432   678999988754 7776544

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.51  E-value=9.8e-16  Score=144.45  Aligned_cols=175  Identities=18%  Similarity=0.168  Sum_probs=124.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|+||+|+||||+++.|++.. +.  .|.+|+.+. ..-....+++.+.+++|++. ++..|.
T Consensus       365 vL~~i~l~i~~G~~--vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i-~~~~~~~lr~~i~~v~Q~~~-LF~~TI  439 (588)
T PRK11174        365 LAGPLNFTLPAGQR--IALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIEL-RELDPESWRKHLSWVGQNPQ-LPHGTL  439 (588)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEec-ccCCHHHHHhheEEecCCCc-CCCcCH
Confidence            45555556688998  9999999999999999999988 55  788998763 22235668889999999874 455566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHH-----Hh--CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK-----KE--GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~-----~~--~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      .+|+..+         -+..+++++.+.++...-     ..  |+  +...-+.=..+|||+.||     |+...+.+++
T Consensus       440 ~eNI~~g---------~~~~~~eei~~al~~a~l~~~i~~lp~G~--dT~vge~G~~LSGGQrQRialARAll~~~~Ili  508 (588)
T PRK11174        440 RDNVLLG---------NPDASDEQLQQALENAWVSEFLPLLPQGL--DTPIGDQAAGLSVGQAQRLALARALLQPCQLLL  508 (588)
T ss_pred             HHHhhcC---------CCCCCHHHHHHHHHHhCHHHHHHhccccc--ccccccCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            6776432         123567776666554311     11  21  112222223589998888     7777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|..+...+.+.+.++.+.   ++++|....+.. +|+++.+
T Consensus       509 LDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~-aD~Iivl  556 (588)
T PRK11174        509 LDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ-WDQIWVM  556 (588)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh-CCEEEEE
Confidence            99999999999988888888777543   789999876654 6777654

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.50  E-value=2.1e-15  Score=126.97  Aligned_cols=163  Identities=17%  Similarity=0.104  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  +.|.||||+|||||+++|++.+.+.  .|.+++.            ..+.+++++..+...   
T Consensus        19 vl~~vs~~i~~Ge~--~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~------------~~i~~v~q~~~~~~~---   81 (251)
T PRK09544         19 VLSDVSLELKPGKI--LTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK------------LRIGYVPQKLYLDTT---   81 (251)
T ss_pred             EEEeEEEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc------------cCEEEeccccccccc---
Confidence            44455555688988  9999999999999999999987654  5555531            124444444322111   


Q ss_pred             CCCCcHHHhcccceeecC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281         100 MSQVIPAIRSRCLCIRIP-APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                         +...+..-   +.+. ....    +.+...++..++  .+.....+..+|+|+.|+     |+...|.++++|||++
T Consensus        82 ---l~~~~~~~---~~~~~~~~~----~~~~~~l~~~gl--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~  149 (251)
T PRK09544         82 ---LPLTVNRF---LRLRPGTKK----EDILPALKRVQA--GHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ  149 (251)
T ss_pred             ---cChhHHHH---HhccccccH----HHHHHHHHHcCC--hHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence               10011100   0011 1122    234556666676  555566788999999888     6667789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++.+.     ++++|+...+...+++++.+
T Consensus       150 ~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l  194 (251)
T PRK09544        150 GVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL  194 (251)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            99999988888888888653     77999999999999987644

>KOG0057|consensus

Probab=99.50  E-value=2e-15  Score=134.14  Aligned_cols=174  Identities=18%  Similarity=0.163  Sum_probs=124.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      +++.++..+.+|+.  +.|.|+|||||||++|+|.+..... -|.||++| +..-..+.+|+.|+.+||+..++-- |..
T Consensus       367 iL~gvsf~I~kGek--VaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~d-ik~~~~~SlR~~Ig~VPQd~~LFnd-TIl  442 (591)
T KOG0057|consen  367 VLKGVSFTIPKGEK--VAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQD-IKEVSLESLRQSIGVVPQDSVLFND-TIL  442 (591)
T ss_pred             eecceeEEecCCCE--EEEECCCCCCHHHHHHHHHHHhccCCcEEECCee-HhhhChHHhhhheeEeCCcccccch-hHH
Confidence            66777777788988  9999999999999999999998744 89999998 4444467899999999999866542 344


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL---------TIPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      .|+..+         -+..+.+++.+..    ++.|+         .+...+-+.=..+|||+.|+     |+...+.++
T Consensus       443 ~NI~YG---------n~sas~eeV~e~~----k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il  509 (591)
T KOG0057|consen  443 YNIKYG---------NPSASDEEVVEAC----KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPIL  509 (591)
T ss_pred             HHhhcC---------CCCcCHHHHHHHH----HHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeE
Confidence            444332         2334555555444    44444         11223444444589999988     666667888


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++||+|+.+|..+..++.+.+.+....   |++.|+...+.. +|+++-+
T Consensus       510 ~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l  558 (591)
T KOG0057|consen  510 LLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVL  558 (591)
T ss_pred             EecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEE
Confidence            999999999998887777777664333   778888776665 4555533

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.50  E-value=1.6e-12  Score=110.09  Aligned_cols=105  Identities=21%  Similarity=0.275  Sum_probs=87.5

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC------------CCCCcHHHhcccceeecCCCCHHHHHHHHHH
Q psy2281          63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS------------MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTN  130 (287)
Q Consensus        63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~------------~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~  130 (287)
                      ++||||++.+.-+.+..|.+.|+... .+.+++.+|.            +..++..+..|..++.-.+++.++++.+++.
T Consensus       294 VLFIDEvHmLDIE~FsFlnrAlEse~-aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~i  372 (450)
T COG1224         294 VLFIDEVHMLDIECFSFLNRALESEL-APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRI  372 (450)
T ss_pred             eEEEechhhhhHHHHHHHHHHhhccc-CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHH
Confidence            99999999999999999999999754 2445555553            2247888999999999999999999999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhhc
Q psy2281         131 ICKKEGLTIPPEFALRLAQQSD-RNLRRAILMCEASKVQ  168 (287)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~s~-G~~r~al~~l~~~~~~  168 (287)
                      .++.+++.+++++++++..... .++|.|+.++......
T Consensus       373 Ra~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~ii  411 (450)
T COG1224         373 RAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASII  411 (450)
T ss_pred             hhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHH
Confidence            9999999999999999998754 4788899888754443

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.50  E-value=7.9e-16  Score=121.12  Aligned_cols=130  Identities=15%  Similarity=0.109  Sum_probs=91.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.|.||||+|||||++++++...+.  .|.+++.+.-........++.+.+.++          
T Consensus        15 vl~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q----------   82 (163)
T cd03216          15 ALDGVSLSVRRGEV--HALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ----------   82 (163)
T ss_pred             EEeeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------
Confidence            34455555688998  9999999999999999999987654  667776442110000111111111111          


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                                                                        +|+|+.|+     |+...|+++++|||+++
T Consensus        83 --------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~  112 (163)
T cd03216          83 --------------------------------------------------LSVGERQMVEIARALARNARLLILDEPTAA  112 (163)
T ss_pred             --------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence                                                              56665555     77788899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.+.    ++++|+...+...+++++.+
T Consensus       113 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l  155 (163)
T cd03216         113 LTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVL  155 (163)
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999998888888888653    77999998888887766543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>KOG0733|consensus

Probab=99.50  E-value=4.5e-13  Score=120.39  Aligned_cols=145  Identities=25%  Similarity=0.304  Sum_probs=105.0

Q ss_pred             CCCCccCcHHHHHHHHHHH----------hcCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281          12 NLQKLDFHCKQANHLRNLL----------KEGDFPH--LLFYGPSGAGKKTRIMALLKELYGP-----------------   62 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~----------~~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------   62 (287)
                      +|+++.|....+..|...+          .-|-.|+  ++|+||||||||.|++++++++..+                 
T Consensus       188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGES  267 (802)
T KOG0733|consen  188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES  267 (802)
T ss_pred             chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCccc
Confidence            4888888887776666555          2254454  9999999999999999999998755                 


Q ss_pred             -----------------EEEEeCCCCCCHH---HHH--------HHHHHHHhccC-----CcE-EEEEeCCCCCCcHHHh
Q psy2281          63 -----------------VIILNETDHLTRE---AQQ--------ALRRTMEKYIT-----TCR-LILCANSMSQVIPAIR  108 (287)
Q Consensus        63 -----------------~i~ide~d~l~~~---~~~--------~l~~~i~~~~~-----~~~-~i~~~~~~~~l~~~l~  108 (287)
                                       ++||||+|.+++.   +|.        .|+..|+.+..     ..+ +|-++|.++.+.+++|
T Consensus       268 EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLR  347 (802)
T KOG0733|consen  268 EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALR  347 (802)
T ss_pred             HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHh
Confidence                             9999999998753   222        34444554432     233 4445566778999988


Q ss_pred             c--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281         109 S--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR  157 (287)
Q Consensus       109 s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~  157 (287)
                      .  |+ .-+.+.-|++....+++..+|+...+. .+.....++.+..|-..-
T Consensus       348 RaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGA  398 (802)
T KOG0733|consen  348 RAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGA  398 (802)
T ss_pred             ccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccch
Confidence            6  34 347788899999999999999877764 244577888888775443

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.50  E-value=6e-16  Score=129.37  Aligned_cols=178  Identities=17%  Similarity=0.156  Sum_probs=112.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+.+++..++. .+.
T Consensus        16 ~l~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv   91 (236)
T cd03253          16 VLKDVSFTIPAGKK--VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDI-REVTLDSLRRAIGVVPQDTVLFN-DTI   91 (236)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEh-hhCCHHHHHhhEEEECCCChhhc-chH
Confidence            44555556678988  9999999999999999999987654  677776542 11112334555677777655432 233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT-----NICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+++...         ....+..+....+.     ..+......++....+....+|+|+.++     |+...|+++++|
T Consensus        92 ~~nl~~~---------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD  162 (236)
T cd03253          92 GYNIRYG---------RPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD  162 (236)
T ss_pred             HHHHhhc---------CCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            3333211         01112222222111     1111111111222333456799998888     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.   ++++|+...+.. +++++.+
T Consensus       163 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l  208 (236)
T cd03253         163 EATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVL  208 (236)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEE
Confidence            999999999888888888777542   678899988865 7777644

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.50  E-value=2.3e-11  Score=109.34  Aligned_cols=154  Identities=22%  Similarity=0.305  Sum_probs=108.7

Q ss_pred             CCccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---C------------------------
Q psy2281          14 QKLDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYG---P------------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~------------------------   62 (287)
                      +.+.+.....+.+...+    ..+..++++|+||+|+|||++++.+++.+..   .                        
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~  109 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ  109 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence            44667776666666655    3334455999999999999999999875410   0                        


Q ss_pred             -------------------------------EEEEeCCCCCC----HHHHHHHHHHHHhccC-CcEEEEEeCCCC---CC
Q psy2281          63 -------------------------------VIILNETDHLT----REAQQALRRTMEKYIT-TCRLILCANSMS---QV  103 (287)
Q Consensus        63 -------------------------------~i~ide~d~l~----~~~~~~l~~~i~~~~~-~~~~i~~~~~~~---~l  103 (287)
                                                     +|+|||+|.+.    .+....+.+.+..... +..+|++++..+   .+
T Consensus       110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l  189 (394)
T PRK00411        110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYIL  189 (394)
T ss_pred             hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhc
Confidence                                           78999999875    2223344444443332 344677766543   46


Q ss_pred             cHHHhccc--ceeecCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHc---CCcHHHHHHHHHHHhh
Q psy2281         104 IPAIRSRC--LCIRIPAPTHEEIVSVLTNICKKE--GLTIPPEFALRLAQQS---DRNLRRAILMCEASKV  167 (287)
Q Consensus       104 ~~~l~sr~--~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s---~G~~r~al~~l~~~~~  167 (287)
                      .+.+++|+  ..+.|++++.+++.+++...++..  .-.+++++++.+++.+   .|+.|+|+..+.....
T Consensus       190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~  260 (394)
T PRK00411        190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGL  260 (394)
T ss_pred             CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            67778887  468999999999999999887642  2246889999998887   8999999998876543

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.49  E-value=1.1e-11  Score=110.43  Aligned_cols=160  Identities=24%  Similarity=0.337  Sum_probs=110.8

Q ss_pred             ccccCCCCCCCccCcHHHHHHHHHHHhc---CC-CCcEEEeCCCCCcHHHHHHHHHHHhC--------------------
Q psy2281           5 VDKYRPNNLQKLDFHCKQANHLRNLLKE---GD-FPHLLFYGPSGAGKKTRIMALLKELY--------------------   60 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~--------------------   60 (287)
                      -..|.|.   ++.|.+...+.|...+..   |. .++++|+||+|+|||++++.+++.+.                    
T Consensus         9 ~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~   85 (365)
T TIGR02928         9 EPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL   85 (365)
T ss_pred             CCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC
Confidence            4568885   678888777777666642   33 34599999999999999998875421                    


Q ss_pred             -----------------C--------C-------------------EEEEeCCCCCCHHHHH---HHHHH--HHhcc-CC
Q psy2281          61 -----------------G--------P-------------------VIILNETDHLTREAQQ---ALRRT--MEKYI-TT   90 (287)
Q Consensus        61 -----------------~--------~-------------------~i~ide~d~l~~~~~~---~l~~~--i~~~~-~~   90 (287)
                                       +        +                   +++|||+|.+....+.   .+.+.  ....+ ..
T Consensus        86 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~  165 (365)
T TIGR02928        86 DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAK  165 (365)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCe
Confidence                             0        0                   7889999988532222   22222  12222 23


Q ss_pred             cEEEEEeCCCC---CCcHHHhcccc--eeecCCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHH---HHcCCcHHHHHH
Q psy2281          91 CRLILCANSMS---QVIPAIRSRCL--CIRIPAPTHEEIVSVLTNICKK--EGLTIPPEFALRLA---QQSDRNLRRAIL  160 (287)
Q Consensus        91 ~~~i~~~~~~~---~l~~~l~sr~~--~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~---~~s~G~~r~al~  160 (287)
                      ..++++++..+   .+.+.+.+|+.  .+.|++++.+++.+++...++.  .+-.+++++.+.++   ..+.|+.|+++.
T Consensus       166 v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~  245 (365)
T TIGR02928       166 VGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAID  245 (365)
T ss_pred             EEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHH
Confidence            45677776653   47778888884  6899999999999999988763  12235777766654   456799999999


Q ss_pred             HHHHHhh
Q psy2281         161 MCEASKV  167 (287)
Q Consensus       161 ~l~~~~~  167 (287)
                      .+..+..
T Consensus       246 ~l~~a~~  252 (365)
T TIGR02928       246 LLRVAGE  252 (365)
T ss_pred             HHHHHHH
Confidence            8887654

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.49  E-value=2.5e-15  Score=126.51  Aligned_cols=172  Identities=17%  Similarity=0.104  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEE-----------EeCCCCCCHHHHHHHHHH---HH
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VII-----------LNETDHLTREAQQALRRT---ME   85 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~-----------ide~d~l~~~~~~~l~~~---i~   85 (287)
                      +.+.+. .+.+|++  +.+.||||+|||||++++++...+.  .|.           +|+.+.-.  .....++.   +.
T Consensus        16 ~l~~i~-~i~~Ge~--~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~i~   90 (255)
T cd03236          16 KLHRLP-VPREGQV--LGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN--YFTKLLEGDVKVI   90 (255)
T ss_pred             hhhcCC-CCCCCCE--EEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh--hhHHhhhccccee
Confidence            455565 4678888  9999999999999999999998765  443           44433110  00111110   11


Q ss_pred             hccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHH
Q psy2281          86 KYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AIL  160 (287)
Q Consensus        86 ~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~  160 (287)
                      ++++...+.. .+...++...            .........+..+++..|+  ++...+.+..+|+|+.|+     ++.
T Consensus        91 ~~~~~~~~~~-~~~~~~i~~~------------l~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LS~G~~qrv~laral~  155 (255)
T cd03236          91 VKPQYVDLIP-KAVKGKVGEL------------LKKKDERGKLDELVDQLEL--RHVLDRNIDQLSGGELQRVAIAAALA  155 (255)
T ss_pred             eecchhccCc-hHHHHHHHHH------------hchhHHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHH
Confidence            1122211111 0111111111            1122334556677777777  455566778899999888     666


Q ss_pred             HHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         161 MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       161 ~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ..+.++++|||++++|......+.+.+.++.+.    ++++|+...+..+++++..+
T Consensus       156 ~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l  212 (255)
T cd03236         156 RDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL  212 (255)
T ss_pred             hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence            778999999999999999888888888888754    77999999998888887644

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.49  E-value=4.2e-16  Score=129.01  Aligned_cols=172  Identities=16%  Similarity=0.145  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  -|.+++.+. .......+++.+.+.+++..++. .+.
T Consensus        19 ~l~~i~~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~l~~-~tv   94 (221)
T cd03244          19 VLKNISFSIKPGEK--VGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDI-SKIGLHDLRSRISIIPQDPVLFS-GTI   94 (221)
T ss_pred             cccceEEEECCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh-HhCCHHHHhhhEEEECCCCcccc-chH
Confidence            55666667788998  9999999999999999999987654  677776542 11112334556777777765432 234


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+++..          +.....++.    ...++..++.         +..........+|+|+.|+     |+..-|.+
T Consensus        95 ~enl~~----------~~~~~~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l  160 (221)
T cd03244          95 RSNLDP----------FGEYSDEEL----WQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI  160 (221)
T ss_pred             HHHhCc----------CCCCCHHHH----HHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            344321          112233222    2233333331         1111123566799998888     67777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~  212 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+.. +++++.
T Consensus       161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~  209 (221)
T cd03244         161 LVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILV  209 (221)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEE
Confidence            9999999999999888888888776533   678898887765 565543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.49  E-value=8.4e-16  Score=157.18  Aligned_cols=178  Identities=14%  Similarity=0.136  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+++|+.  +.|+||+|+||||++++|.+...+.  .|.||+.|. ..-....+|+.+..++|++.+ +..|
T Consensus      1250 ~vL~~isl~I~~Gek--vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di-~~i~~~~lR~~i~iVpQdp~L-F~gT 1325 (1495)
T PLN03232       1250 PVLHGLSFFVSPSEK--VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDV-AKFGLTDLRRVLSIIPQSPVL-FSGT 1325 (1495)
T ss_pred             cccccceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEh-hhCCHHHHHhhcEEECCCCee-eCcc
Confidence            356677777789999  9999999999999999999988766  899999873 333356788999999999855 4567


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      ..+|+.+          +...+++++.+.++..     ++...-.++....+.=.++|+|+.|+     |+...++++++
T Consensus      1326 Ir~NL~~----------~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILIL 1395 (1495)
T PLN03232       1326 VRFNIDP----------FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVL 1395 (1495)
T ss_pred             HHHHcCC----------CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            7788765          3345677766655432     11111011222222223588888777     77777899999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||+|+++|..+...+.+.+++..+.   |+++|....+.. +|+++.+
T Consensus      1396 DEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL 1442 (1495)
T PLN03232       1396 DEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVL 1442 (1495)
T ss_pred             ECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence            9999999988887777777766433   779999988876 6877754

>KOG0730|consensus

Probab=99.49  E-value=3.9e-13  Score=121.91  Aligned_cols=155  Identities=23%  Similarity=0.251  Sum_probs=110.5

Q ss_pred             CCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      .-+++++.|.++++..++..+.           =|-.|+  ++||||||||||+++++++++...+              
T Consensus       430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v  509 (693)
T KOG0730|consen  430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV  509 (693)
T ss_pred             CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc
Confidence            4578899999999998887762           242233  9999999999999999999987654              


Q ss_pred             --------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhccCC-cEEEE-EeCCCCCCcHHHhc
Q psy2281          63 --------------------VIILNETDHLTRE-----------AQQALRRTMEKYITT-CRLIL-CANSMSQVIPAIRS  109 (287)
Q Consensus        63 --------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~~~-~~~i~-~~~~~~~l~~~l~s  109 (287)
                                          ++|+||+|.+...           ..+.|+.-|+-..+. ..+++ .+|.++.|++++.+
T Consensus       510 GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlR  589 (693)
T KOG0730|consen  510 GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLR  589 (693)
T ss_pred             CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcC
Confidence                                9999999986533           233455555544333 34444 45556779999988


Q ss_pred             --cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHH----HcCCcHHHHHHHHHHHh
Q psy2281         110 --RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQ----QSDRNLRRAILMCEASK  166 (287)
Q Consensus       110 --r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~----~s~G~~r~al~~l~~~~  166 (287)
                        |+ +.+.++.|+.+...++++..+++..+  +++ .++.+++    +||.|++........++
T Consensus       590 PGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~--~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a  652 (693)
T KOG0730|consen  590 PGRLDRIIYVPLPDLEARLEILKQCAKKMPF--SEDVDLEELAQATEGYSGAEIVAVCQEAALLA  652 (693)
T ss_pred             CcccceeEeecCccHHHHHHHHHHHHhcCCC--CccccHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence              77 57889999999999999998887766  444 4566665    56666665444444333

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.49  E-value=7e-16  Score=129.10  Aligned_cols=178  Identities=16%  Similarity=0.052  Sum_probs=111.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. ........++.+.+.+++..++. .+.
T Consensus        18 ~l~~i~~~i~~Ge~--~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~q~~~~~~-~tv   93 (238)
T cd03249          18 ILKGLSLTIPPGKT--VALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDI-RDLNLRWLRSQIGLVSQEPVLFD-GTI   93 (238)
T ss_pred             ceeceEEEecCCCE--EEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEeh-hhcCHHHHHhhEEEECCchhhhh-hhH
Confidence            44555556688988  9999999999999999999987654  677887542 11112223445666666644332 233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT-----NICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+++....         .....++....+.     ..+......+.......+.++|+|+.|+     |+...|.++++|
T Consensus        94 ~e~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD  164 (238)
T cd03249          94 AENIRYGK---------PDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD  164 (238)
T ss_pred             HHHhhccC---------CCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            33322110         0112222221111     1111110011222233456799998888     666678999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|......+.+.+.++.+.   ++++|+.+.+. .+|+++.+
T Consensus       165 EP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l  210 (238)
T cd03249         165 EATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVL  210 (238)
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEE
Confidence            999999999998888888877522   77899998886 68887654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.49  E-value=4.4e-16  Score=126.17  Aligned_cols=149  Identities=21%  Similarity=0.236  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      .+.+.++..+++|+.  ++|.||||+|||||+++|++..  .+.  .|.+|+.+. ..   ...++.+.+.+++..+   
T Consensus        23 ~~l~~~~~~i~~Ge~--~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~-~~---~~~~~~i~~~~q~~~~---   93 (194)
T cd03213          23 QLLKNVSGKAKPGEL--TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL-DK---RSFRKIIGYVPQDDIL---   93 (194)
T ss_pred             cceecceEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeC-ch---HhhhheEEEccCcccC---
Confidence            356666667788999  9999999999999999999987  544  677887653 21   1122223332222111   


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                                         |...+-.+.......      +          ..+|+|+.|+     |+...+.++++|||
T Consensus        94 -------------------~~~~t~~~~i~~~~~------~----------~~LS~G~~qrv~laral~~~p~illlDEP  138 (194)
T cd03213          94 -------------------HPTLTVRETLMFAAK------L----------RGLSGGERKRVSIALELVSNPSLLFLDEP  138 (194)
T ss_pred             -------------------CCCCcHHHHHHHHHH------h----------ccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                               111111111110000      0          0677887777     77777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.+.    ++++|+.. .+...+|+++.+
T Consensus       139 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l  185 (194)
T cd03213         139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLL  185 (194)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEE
Confidence            9999999988888888888653    77899986 677777766533

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.48  E-value=9.1e-16  Score=121.83  Aligned_cols=139  Identities=20%  Similarity=0.181  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  +++.||||+|||||++++++...+.  .+.+++.+. .......+++.+.+.+++..+      
T Consensus        17 ~l~~i~~~i~~G~~--~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~~~~~~~~------   87 (171)
T cd03228          17 VLKDVSLTIKPGEK--VAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDL-RDLDLESLRKNIAYVPQDPFL------   87 (171)
T ss_pred             cccceEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEh-hhcCHHHHHhhEEEEcCCchh------
Confidence            44555556688988  9999999999999999999987654  667776432 111111222223333222111      


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                                      |. .+   ..+.+                     +|+|+.|+     |+...+.++++|||+++
T Consensus        88 ----------------~~-~t---~~e~l---------------------LS~G~~~rl~la~al~~~p~llllDEP~~g  126 (171)
T cd03228          88 ----------------FS-GT---IRENI---------------------LSGGQRQRIAIARALLRDPPILILDEATSA  126 (171)
T ss_pred             ----------------cc-ch---HHHHh---------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence                            10 00   00000                     67776666     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~  211 (287)
                      +|......+.+.+.++.+.   ++++|+.+.+.. +++++
T Consensus       127 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~  165 (171)
T cd03228         127 LDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRII  165 (171)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEE
Confidence            9999888888888877543   778999888766 66544

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=3.6e-15  Score=119.26  Aligned_cols=179  Identities=17%  Similarity=0.093  Sum_probs=117.3

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLIL   95 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~   95 (287)
                      +++++.++..++.|+.  ..|.||||+|||||+++|++.-...    -|++|+.|...-..-+..+.-+-..+|++.=|.
T Consensus        17 keILkgvnL~v~~GEv--haiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~   94 (251)
T COG0396          17 KEILKGVNLTVKEGEV--HAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP   94 (251)
T ss_pred             hhhhcCcceeEcCCcE--EEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC
Confidence            4677888888899999  9999999999999999999976544    788998886432222222222222233332222


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH--HHcCCcHHH-----HHHHHHHHhhc
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA--QQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      -.+..+.+..+...+-   .-..+ ..+..+.+++.++..++  ++..+++-.  ..|||+.+|     ++.+.|+++++
T Consensus        95 GV~~~~fLr~a~n~~~---~~~~~-~~~~~~~~~e~~~~l~~--~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~IL  168 (251)
T COG0396          95 GVTNSDFLRAAMNARR---GARGI-LPEFIKELKEKAELLGL--DEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAIL  168 (251)
T ss_pred             CeeHHHHHHHHHHhhh---ccccc-cHHHHHHHHHHHHHcCC--CHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEe
Confidence            2222221222211110   01112 34677788888888887  555444433  379999888     77777999999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV  206 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~  206 (287)
                      |||-|++|....+.+.+.+..+.+.    +++||...-+..+
T Consensus       169 DE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i  210 (251)
T COG0396         169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI  210 (251)
T ss_pred             cCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence            9999999988777777777777765    7788876555544

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.48  E-value=2e-12  Score=115.07  Aligned_cols=153  Identities=21%  Similarity=0.298  Sum_probs=103.5

Q ss_pred             CCCCCCccCcHHHHHHHHHHHh-----------cCCC-Cc-EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLK-----------EGDF-PH-LLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~-~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      .-+++++.|....++.++..+.           -|-. |. ++|+||||||||++++++++.....              
T Consensus       141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~  220 (398)
T PTZ00454        141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYL  220 (398)
T ss_pred             CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhc
Confidence            4468889998888777776652           1322 22 9999999999999999999876533              


Q ss_pred             --------------------EEEEeCCCCCCH-----------HHHHHH---HHHHHhcc--CCcEEEEEeCCCCCCcHH
Q psy2281          63 --------------------VIILNETDHLTR-----------EAQQAL---RRTMEKYI--TTCRLILCANSMSQVIPA  106 (287)
Q Consensus        63 --------------------~i~ide~d~l~~-----------~~~~~l---~~~i~~~~--~~~~~i~~~~~~~~l~~~  106 (287)
                                          +|++||+|.+..           ..+..+   +..++...  .+..++.++|.++.+.++
T Consensus       221 ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpA  300 (398)
T PTZ00454        221 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPA  300 (398)
T ss_pred             chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHH
Confidence                                899999987531           122233   33343322  234577788888889998


Q ss_pred             Hhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH----HcCCcHHHHHHHHH
Q psy2281         107 IRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ----QSDRNLRRAILMCE  163 (287)
Q Consensus       107 l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~----~s~G~~r~al~~l~  163 (287)
                      +.+  |+ ..+.|+.|+.++...+++..+.+.++. .+.....++.    +|+.|++..+...-
T Consensus       301 llR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~  363 (398)
T PTZ00454        301 LLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAG  363 (398)
T ss_pred             HcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            875  66 358999999999999999888877663 2223444444    45556655444443

>TIGR00763 lon ATP-dependent protease La

Probab=99.48  E-value=5.5e-13  Score=128.78  Aligned_cols=136  Identities=22%  Similarity=0.251  Sum_probs=101.1

Q ss_pred             CccCcHHHHHHHHHHHh----c--CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------------
Q psy2281          15 KLDFHCKQANHLRNLLK----E--GDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~----~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------------   62 (287)
                      +++|+..+++.+..++.    .  ...++++|+||||||||++++++++.+..+                          
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~  400 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAM  400 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCC
Confidence            36788888888777552    1  123459999999999999999999886311                          


Q ss_pred             ----------------EEEEeCCCCCCHHH----HHHHHHHHHhc---------------cCCcEEEEEeCCCCCCcHHH
Q psy2281          63 ----------------VIILNETDHLTREA----QQALRRTMEKY---------------ITTCRLILCANSMSQVIPAI  107 (287)
Q Consensus        63 ----------------~i~ide~d~l~~~~----~~~l~~~i~~~---------------~~~~~~i~~~~~~~~l~~~l  107 (287)
                                      ++++||+|.+....    .++|+..++..               ..+..|+.++|..+.+.+++
T Consensus       401 ~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L  480 (775)
T TIGR00763       401 PGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPL  480 (775)
T ss_pred             CchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHH
Confidence                            89999999986532    35666665420               12355677777778899999


Q ss_pred             hcccceeecCCCCHHHHHHHHHHHH-----HHh-----CCCCCHHHHHHHHHH
Q psy2281         108 RSRCLCIRIPAPTHEEIVSVLTNIC-----KKE-----GLTIPPEFALRLAQQ  150 (287)
Q Consensus       108 ~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~-----~~~~~~~~~~~l~~~  150 (287)
                      ++||.++.|++++.++...+++..+     +..     ++.++++++..+++.
T Consensus       481 ~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~  533 (775)
T TIGR00763       481 LDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKY  533 (775)
T ss_pred             hCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHh
Confidence            9999999999999999888887654     222     346788899888863

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.48  E-value=1.5e-15  Score=143.27  Aligned_cols=173  Identities=11%  Similarity=0.065  Sum_probs=122.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++++||+|||||||++++++...+.  .|.+|+.+. +.-..+.+++.+.+++|++.++- .|.
T Consensus       356 il~~i~l~i~~Ge~--iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i-~~~~~~~l~~~i~~v~Q~~~lF~-~Ti  431 (592)
T PRK10790        356 VLQNINLSVPSRGF--VALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL-SSLSHSVLRQGVAMVQQDPVVLA-DTF  431 (592)
T ss_pred             eeeceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh-hhCCHHHHHhheEEEccCCcccc-chH
Confidence            45566666688999  9999999999999999999998766  789998763 33335678889999999886543 466


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC-----C----CHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT-----I----PPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~----~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+|+..          +...+++++.+.+    +..|+.     +    +....+.=..+|||+.||     |+...+.+
T Consensus       432 ~~NI~~----------~~~~~d~~i~~a~----~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i  497 (592)
T PRK10790        432 LANVTL----------GRDISEEQVWQAL----ETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI  497 (592)
T ss_pred             HHHHHh----------CCCCCHHHHHHHH----HHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            666643          2234555554443    333431     1    111111123488998888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|..+...+.+.+.++.+.   ++++|+...+.. +|+++.+
T Consensus       498 lllDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~-~D~ii~l  547 (592)
T PRK10790        498 LILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE-ADTILVL  547 (592)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-CCEEEEE
Confidence            9999999999999888888888777543   779999866664 6776644

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.48  E-value=2.4e-15  Score=140.10  Aligned_cols=170  Identities=19%  Similarity=0.119  Sum_probs=118.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.++||+|+|||||++.+++...+.  .|.+|+.+. ..-....+++.+.+++|++.++ ..|.
T Consensus       337 il~~i~l~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i-~~~~~~~lr~~i~~v~Q~~~lf-~~ti  412 (529)
T TIGR02857       337 ALRPVSFTVPPGER--VALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL-ADADADSWRDQIAWVPQHPFLF-AGTI  412 (529)
T ss_pred             cccceeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh-hhCCHHHHHhheEEEcCCCccc-CcCH
Confidence            56666667788998  9999999999999999999988766  788998763 2222456788899999887544 4566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL---------TIPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+|+..+         .+..+++++.+.++.    .++         .++...-+.-..+|||+.||     |+...+++
T Consensus       413 ~~Ni~~~---------~~~~~~~~i~~a~~~----~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i  479 (529)
T TIGR02857       413 AENIRLA---------RPDASDAEIRRALER----AGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL  479 (529)
T ss_pred             HHHHhcc---------CCCCCHHHHHHHHHH----cCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE
Confidence            6666432         122355555544433    232         11222222334589998888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTR  209 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~  209 (287)
                      +++|||++++|..+...+.+.+.++.+.   ++++|+...+. .+|+
T Consensus       480 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~  525 (529)
T TIGR02857       480 LLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADR  525 (529)
T ss_pred             EEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCE
Confidence            9999999999999988888888776433   77899886654 3444

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.48  E-value=1.1e-15  Score=124.52  Aligned_cols=156  Identities=14%  Similarity=0.085  Sum_probs=100.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---GP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...   +.  .|.+++.+.....  ...++.+.+.+++..++..
T Consensus        22 il~~~s~~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~--~~~~~~i~~~~q~~~~~~~   97 (202)
T cd03233          22 ILKDFSGVVKPGEM--VLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA--EKYPGEIIYVSEEDVHFPT   97 (202)
T ss_pred             eeeeEEEEECCCcE--EEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch--hhhcceEEEEecccccCCC
Confidence            44555566688988  99999999999999999999876   33  6778876532111  1222233443433222222


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++....                      . .   .      ..+.+..+|+|+.|+     |+...|.++++|||
T Consensus        98 ~tv~~~l~~~~----------------------~-~---~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEP  145 (202)
T cd03233          98 LTVRETLDFAL----------------------R-C---K------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNS  145 (202)
T ss_pred             CcHHHHHhhhh----------------------h-h---c------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence            22222211100                      0 0   0      123456788888887     77777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHh-ccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IIS-EQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~-~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.+.     ++. +|..+.+...+++++.+
T Consensus       146 t~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l  193 (202)
T cd03233         146 TRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL  193 (202)
T ss_pred             CccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEE
Confidence            9999999999999999988653     343 45557777777766533

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.48  E-value=1.1e-15  Score=123.63  Aligned_cols=147  Identities=16%  Similarity=0.118  Sum_probs=96.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--CC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--GP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+++|++  ++|.||||+|||||+++|++...  +.  .+.+|+.+. .    ..+++.+.+.++...++...
T Consensus        22 ~l~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~-~----~~~~~~i~~~~q~~~~~~~~   94 (192)
T cd03232          22 LLNNISGYVKPGTL--TALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL-D----KNFQRSTGYVEQQDVHSPNL   94 (192)
T ss_pred             eEEccEEEEeCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh-H----HHhhhceEEecccCccccCC
Confidence            34455555678888  99999999999999999998642  22  677887542 1    22233344444332221111


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+++                      .... .+               .++|+|+.|+     |+..-+.++++|||+
T Consensus        95 tv~~~l----------------------~~~~-~~---------------~~LSgGe~qrv~la~al~~~p~vlllDEP~  136 (192)
T cd03232          95 TVREAL----------------------RFSA-LL---------------RGLSVEQRKRLTIGVELAAKPSILFLDEPT  136 (192)
T ss_pred             cHHHHH----------------------HHHH-HH---------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCC
Confidence            111111                      1100 00               0678887777     777778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++.+.    ++++|+.+ .+...+|+++.+
T Consensus       137 ~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l  182 (192)
T cd03232         137 SGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLL  182 (192)
T ss_pred             cCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEE
Confidence            999999998888888887653    77999987 467777766543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.47  E-value=9.2e-16  Score=146.99  Aligned_cols=171  Identities=17%  Similarity=0.168  Sum_probs=122.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++++||+|||||||++.+++...+.  .|.+|+.+. ..-..+.+++.+.+++|++.+ +..|.
T Consensus       468 vL~~isl~i~~Ge~--vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i-~~~~~~~lr~~i~~v~Q~~~l-f~gTI  543 (686)
T TIGR03797       468 ILDDVSLQIEPGEF--VAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDL-AGLDVQAVRRQLGVVLQNGRL-MSGSI  543 (686)
T ss_pred             ceeeeEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEc-CcCCHHHHHhccEEEccCCcc-CcccH
Confidence            55666666688998  9999999999999999999998766  899998763 222355688899999998865 44566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~  163 (287)
                      .+|+..          ..+.+++++.+.++    ..++  .+...           +.-..+|||+.||     |+...+
T Consensus       544 ~eNi~~----------~~~~~~e~i~~al~----~a~l--~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p  607 (686)
T TIGR03797       544 FENIAG----------GAPLTLDEAWEAAR----MAGL--AEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP  607 (686)
T ss_pred             HHHHhc----------CCCCCHHHHHHHHH----HcCc--HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence            666543          22245555554443    3343  11111           1123589998888     777778


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .++++|||++++|..+...+.+.+.++... ++++|....+.. +|+++.+
T Consensus       608 ~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl  657 (686)
T TIGR03797       608 RILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVL  657 (686)
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEE
Confidence            999999999999998888877777766322 779999877765 6776644

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.47  E-value=4e-15  Score=118.96  Aligned_cols=141  Identities=18%  Similarity=0.119  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||+|||||++++++...+.  .|.+++.+. ... ...+++.+.+++++..++. .+.
T Consensus        17 ~l~~i~~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~-~~~-~~~~~~~i~~~~q~~~~~~-~tv   91 (178)
T cd03247          17 VLKNLSLELKQGEK--IALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPV-SDL-EKALSSLISVLNQRPYLFD-TTL   91 (178)
T ss_pred             ceEEEEEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEH-HHH-HHHHHhhEEEEccCCeeec-ccH
Confidence            44455555678988  9999999999999999999987654  677887542 111 2233333444444332211 111


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++                                           ...+|+|+.|+     |+...++++++|||+++
T Consensus        92 ~~~i-------------------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~  128 (178)
T cd03247          92 RNNL-------------------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVG  128 (178)
T ss_pred             HHhh-------------------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence            1110                                           44577777666     78888899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~  211 (287)
                      +|......+.+.+.++.+.   ++++|+...+. .+++++
T Consensus       129 LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~  167 (178)
T cd03247         129 LDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKIL  167 (178)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEE
Confidence            9998888888888776432   67889988775 456554

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.47  E-value=9e-13  Score=121.52  Aligned_cols=154  Identities=20%  Similarity=0.257  Sum_probs=106.1

Q ss_pred             cCCCCCCCccCcHHHHHHHHHHHh-----------cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281           8 YRPNNLQKLDFHCKQANHLRNLLK-----------EGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------   62 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------   62 (287)
                      ....+|+++.|.+.++..+..++.           ....|. ++|+||||||||++++++++....+             
T Consensus        49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~  128 (495)
T TIGR01241        49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF  128 (495)
T ss_pred             CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence            345689999999888776666552           133343 9999999999999999999876433             


Q ss_pred             ---------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhccCC--cEEEEEeCCCCCCcH
Q psy2281          63 ---------------------VIILNETDHLTRE--------------AQQALRRTMEKYITT--CRLILCANSMSQVIP  105 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~  105 (287)
                                           +|+|||+|.+...              ..+.++..|+...++  ..+|.++|.++.+.+
T Consensus       129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~  208 (495)
T TIGR01241       129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDP  208 (495)
T ss_pred             hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCH
Confidence                                 9999999886422              123344445544332  234555666678999


Q ss_pred             HHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHHHH
Q psy2281         106 AIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ----SDRNLRRAILMC  162 (287)
Q Consensus       106 ~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----s~G~~r~al~~l  162 (287)
                      ++++  |+ ..+.++.|+.++..++++..+....+. ++.....+++.    |++|++.+++..
T Consensus       209 al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA  271 (495)
T TIGR01241       209 ALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEA  271 (495)
T ss_pred             HHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHH
Confidence            9987  55 368899999999999999888766553 23345556654    556777666543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.47  E-value=1.5e-15  Score=155.67  Aligned_cols=177  Identities=15%  Similarity=0.132  Sum_probs=129.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.|+|++|+||||++++|.+...+.  .|.||+.|. ..-....+|+.+..++|++.+ +..|.
T Consensus      1254 VL~~is~~I~~Gek--VaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI-~~i~l~~LR~~IsiVpQdp~L-F~GTI 1329 (1622)
T PLN03130       1254 VLHGLSFEISPSEK--VGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDI-SKFGLMDLRKVLGIIPQAPVL-FSGTV 1329 (1622)
T ss_pred             eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEec-ccCCHHHHHhccEEECCCCcc-ccccH
Confidence            56677777789999  9999999999999999999988766  899999884 333456788999999999855 45677


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+|+.+          +...+++++.+.++..     .......++....+.-.++|+|+.|+     |+...++++++|
T Consensus      1330 reNLd~----------~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILD 1399 (1622)
T PLN03130       1330 RFNLDP----------FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLD 1399 (1622)
T ss_pred             HHHhCc----------CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            788865          3345777766665542     11111111222222234588888777     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |+|+++|..+...+.+.+++..+.   |+++|....+.. +|+++.+
T Consensus      1400 EATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVL 1445 (1622)
T PLN03130       1400 EATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVL 1445 (1622)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEE
Confidence            999999988887777777766443   779999988876 6877644

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.47  E-value=1.5e-15  Score=142.61  Aligned_cols=179  Identities=18%  Similarity=0.156  Sum_probs=128.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+++|+.  +.++||+||||||+++.+.+...+.  .|.+|+.| +..-....+++.+..++|++.++- .|
T Consensus       343 ~vl~~is~~i~~Ge~--vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d-I~~i~~~~lr~~I~~V~Qd~~LF~-~T  418 (567)
T COG1132         343 PVLKDISFSIEPGEK--VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID-IRDISLDSLRKRIGIVSQDPLLFS-GT  418 (567)
T ss_pred             ccccCceEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe-hhhcCHHHHHHhccEEcccceeec-cc
Confidence            456677777889999  9999999999999999999998875  66669877 333346788999999998876554 67


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHH-HHh--CC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC-KKE--GL--TIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~-~~~--~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      ..+|+..+-         +..+++++.+.++... ...  ++  .++...-+.=..+|||+.||     |+...+.++++
T Consensus       419 I~~NI~~g~---------~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILIL  489 (567)
T COG1132         419 IRENIALGR---------PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILIL  489 (567)
T ss_pred             HHHHHhcCC---------CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            778876531         2256777777766541 111  11  01111112223588888887     77777889999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||||+.+|..+...+.+.+.++.+.   ++++|....+.. +|+++.+
T Consensus       490 DEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl  536 (567)
T COG1132         490 DEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVL  536 (567)
T ss_pred             eccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEE
Confidence            9999999999988888888766543   568899888877 7877654

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.46  E-value=2.8e-15  Score=142.14  Aligned_cols=180  Identities=14%  Similarity=0.113  Sum_probs=128.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC--CHHHHHHH-HHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL--TREAQQAL-RRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l--~~~~~~~l-~~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+++|+.  +.|.||||+|||||++++++...++  .+.+|+.+..  .......+ ++.+.+.+++..++..
T Consensus        23 il~~vs~~i~~Ge~--~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~  100 (648)
T PRK10535         23 VLKGISLDIYAGEM--VAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH  100 (648)
T ss_pred             eeeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence            45556666688998  9999999999999999999998765  7788876532  22211122 3456777777655444


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      .+..+++.....       +...+..+..+.+...++..++  ++.....+.++|+|+.|+     |+...|+++++|||
T Consensus       101 ~tv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~lgl--~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP  171 (648)
T PRK10535        101 LTAAQNVEVPAV-------YAGLERKQRLLRAQELLQRLGL--EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEP  171 (648)
T ss_pred             CCHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            444455433221       2233445566677778888777  555566678899999888     67777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.+.++.+.    ++++|+.+... .+|+++.+
T Consensus       172 ~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l  216 (648)
T PRK10535        172 TGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEI  216 (648)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEE
Confidence            9999999999999999888654    77999988765 57877644

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.46  E-value=6.2e-16  Score=148.76  Aligned_cols=178  Identities=13%  Similarity=0.059  Sum_probs=122.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.++||+|||||||+++|++...+.  .|.+|+.|. ..-....+++.+.+++|++.++ ..|.
T Consensus       494 vL~~isl~i~~Ge~--vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i-~~~~~~~lr~~i~~v~Q~~~lf-~gTi  569 (710)
T TIGR03796       494 LIENFSLTLQPGQR--VALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPR-EEIPREVLANSVAMVDQDIFLF-EGTV  569 (710)
T ss_pred             cccceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeH-HHCCHHHHHhheeEEecCChhh-hccH
Confidence            56666666788998  9999999999999999999998766  899999773 2223567889999999987544 4566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHH-----HHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC-----KKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+|+...         -+..+++++.+.++...     ......++....+.=..+|||+.||     |+...++++++|
T Consensus       570 ~eNi~l~---------~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLD  640 (710)
T TIGR03796       570 RDNLTLW---------DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILD  640 (710)
T ss_pred             HHHhhCC---------CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEE
Confidence            6776431         12345666555444321     1110011111112223589998888     777788999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|..+...+.+.+.+.-.. |+++|....+.. +|+++.+
T Consensus       641 EptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~D~Iivl  684 (710)
T TIGR03796       641 EATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-CDEIIVL  684 (710)
T ss_pred             CccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEE
Confidence            999999998887777776652111 778999877765 7877655

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.46  E-value=4.1e-14  Score=108.53  Aligned_cols=170  Identities=14%  Similarity=0.153  Sum_probs=118.8

Q ss_pred             HHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          27 RNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        27 ~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                      +..+..|+.  +-++|||||||||++-.+++...+. .|.+++.+.-. -....|.+.=.+..++..-.+.+.+..    
T Consensus        19 S~qv~aGe~--~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~-~~~~eLArhRAYLsQqq~p~f~mpV~~----   91 (248)
T COG4138          19 SGEVRAGEI--LHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEA-WSATELARHRAYLSQQQTPPFAMPVWH----   91 (248)
T ss_pred             ccccccceE--EEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhH-HhHhHHHHHHHHHhhccCCcchhhhhh----
Confidence            334456777  8899999999999999999988766 78889877422 222333333333333321111111211    


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH------------HHHHHHHHhhcCCCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR------------AILMCEASKVQQYPFQ  173 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~------------al~~l~~~~~~dep~~  173 (287)
                             ++....|. ++....+..++...++  ++..-+.+.++|||+-+|            -+|-..++++.|||.+
T Consensus        92 -------YL~L~qP~-~~~a~~i~~i~~~L~l--~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~  161 (248)
T COG4138          92 -------YLTLHQPD-KTRTELLNDVAGALAL--DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMN  161 (248)
T ss_pred             -------hhhhcCch-HHHHHHHHHHHhhhcc--cchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCc
Confidence                   11233333 6777888889988887  888899999999999998            3444557888999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|..........+.++..+    |++.||.+.-.+-.+++.-+
T Consensus       162 ~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL  205 (248)
T COG4138         162 SLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLL  205 (248)
T ss_pred             chhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHH
Confidence            99977666666777777766    78999999888888887633

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.46  E-value=3e-15  Score=140.90  Aligned_cols=176  Identities=21%  Similarity=0.183  Sum_probs=120.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +++.||+|+|||||++++++...+.  .|.+|+.+ ++.-....+++.+.+++|++. ++..|.
T Consensus       355 iL~~inl~i~~Ge~--i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~-i~~~~~~~~~~~i~~~~Q~~~-lf~~Ti  430 (576)
T TIGR02204       355 ALDGLNLTVRPGET--VALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD-LRQLDPAELRARMALVPQDPV-LFAASV  430 (576)
T ss_pred             cccceeEEecCCCE--EEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE-HHhcCHHHHHHhceEEccCCc-cccccH
Confidence            45666666689999  9999999999999999999998765  78899876 333334567788999998775 445566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHh--CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKE--GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~--~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      .+|+..+         .+..+++++.+.++..     ++..  |+  +....+.-..+|+|+.||     |+...+.+++
T Consensus       431 ~~Ni~~~---------~~~~~~~~~~~~l~~~~l~~~i~~l~~gl--~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ili  499 (576)
T TIGR02204       431 MENIRYG---------RPDATDEEVEAAARAAHAHEFISALPEGY--DTYLGERGVTLSGGQRQRIAIARAILKDAPILL  499 (576)
T ss_pred             HHHHhcC---------CCCCCHHHHHHHHHHcCcHHHHHhCCCCC--CceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEE
Confidence            6666432         1223444544443321     1111  21  111112233589998887     7777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|..+...+.+.+.++.+.   ++++|+...+. .+|+++.+
T Consensus       500 lDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l  547 (576)
T TIGR02204       500 LDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVM  547 (576)
T ss_pred             EeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEE
Confidence            99999999998887777777776433   77899986654 46776644

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>KOG0055|consensus

Probab=99.46  E-value=1.8e-14  Score=139.42  Aligned_cols=176  Identities=15%  Similarity=0.114  Sum_probs=124.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+++|+.  +.|+|||||||||++..|.+...|.  .|+||+.|. ..-....|+..++-++|.+ +++.++.
T Consensus       368 Il~g~sl~i~~G~~--valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di-~~~~~~~lr~~iglV~QeP-vlF~~tI  443 (1228)
T KOG0055|consen  368 ILKGVSLKIPSGQT--VALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDI-RNLNLKWLRSQIGLVSQEP-VLFATTI  443 (1228)
T ss_pred             hhCCeEEEeCCCCE--EEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccc-hhcchHHHHhhcCeeeech-hhhcccH
Confidence            44556666688999  9999999999999999999999887  899999884 3334677889999999988 5566677


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh---CC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE---GL--TIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~---~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+|+..+         -+..+.+++.+..+..-...   .+  .++....+.=.++|||+.||     |+...|+++++|
T Consensus       444 ~eNI~~G---------~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLD  514 (1228)
T KOG0055|consen  444 RENIRYG---------KPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLD  514 (1228)
T ss_pred             HHHHhcC---------CCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEec
Confidence            7776432         11223555554443211100   00  00111111122378888777     888889999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~  211 (287)
                      |+|+++|......+.+.+.+..+.   ++++|....+.. .|.++
T Consensus       515 EaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~  558 (1228)
T KOG0055|consen  515 EATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIA  558 (1228)
T ss_pred             CcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEE
Confidence            999999999988888888777654   888999888887 56655

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.46  E-value=5.5e-12  Score=107.46  Aligned_cols=145  Identities=21%  Similarity=0.250  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------------------
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------------------------   62 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------------------------   62 (287)
                      ..+...+...++.+. +.++++||+|+||||+++.+++.+.+.                                     
T Consensus        29 ~~~~~~l~~~~~~~~-~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~  107 (269)
T TIGR03015        29 KRAMAYLEYGLSQRE-GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAAL  107 (269)
T ss_pred             HHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHH
Confidence            344555555555443 128999999999999999998876421                                     


Q ss_pred             ------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCc---EEEEEeCCC------CCCcHHHhccc-cee
Q psy2281          63 ------------------VIILNETDHLTREAQQALRRTMEKYITTC---RLILCANSM------SQVIPAIRSRC-LCI  114 (287)
Q Consensus        63 ------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~---~~i~~~~~~------~~l~~~l~sr~-~~~  114 (287)
                                        ++++||++.++......++...+....+.   .++++....      ..-..++.+|+ ..+
T Consensus       108 ~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~  187 (269)
T TIGR03015       108 LRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASC  187 (269)
T ss_pred             HHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeee
Confidence                              88999999998777666654433322121   233333211      11133567775 467


Q ss_pred             ecCCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy2281         115 RIPAPTHEEIVSVLTNICKKEG----LTIPPEFALRLAQQSDRNLRRAILMCEAS  165 (287)
Q Consensus       115 ~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~s~G~~r~al~~l~~~  165 (287)
                      .+++++.+++.+.+...+...|    ..+++++.+.+.+.|+|..|........+
T Consensus       188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            8999999999999998888665    35789999999999999988844444443

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.45  E-value=4.4e-15  Score=138.82  Aligned_cols=158  Identities=14%  Similarity=0.022  Sum_probs=111.9

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                      ++..+.+|++  +.|.||||+|||||+++|++.+.+.  .|.++ .             .+.+.+|+..+....++.+++
T Consensus       358 ~s~~i~~Gei--v~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-~-------------~i~y~~Q~~~~~~~~tv~e~l  421 (590)
T PRK13409        358 EGGEIYEGEV--IGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-L-------------KISYKPQYIKPDYDGTVEDLL  421 (590)
T ss_pred             cceEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-e-------------eEEEecccccCCCCCcHHHHH
Confidence            3344577888  9999999999999999999987654  44443 1             244555543322222222222


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCc
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQI  178 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~  178 (287)
                      ....         ......   ....++++..++  .+...+.+.++|+|+.||     |+...+.++++|||++++|..
T Consensus       422 ~~~~---------~~~~~~---~~~~~~L~~l~l--~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~  487 (590)
T PRK13409        422 RSIT---------DDLGSS---YYKSEIIKPLQL--ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE  487 (590)
T ss_pred             HHHh---------hhcChH---HHHHHHHHHCCC--HHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence            2110         011111   234567777777  566777889999999999     666678899999999999999


Q ss_pred             cCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         179 VEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       179 ~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ....+.+.+.++.++     ++++|+...+..++|+++.+
T Consensus       488 ~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl  527 (590)
T PRK13409        488 QRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF  527 (590)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999998763     78999999999999987644

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.45  E-value=2.9e-12  Score=114.41  Aligned_cols=152  Identities=24%  Similarity=0.363  Sum_probs=102.5

Q ss_pred             CCCCCccCcHHHHHHHHHHHh-----------cC-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLLK-----------EG-DFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~-----------~g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      ..++++.|.+..++.+...+.           -| ..|. ++|+||||||||++++++++.....               
T Consensus       128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g  207 (389)
T PRK03992        128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIG  207 (389)
T ss_pred             CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhcc
Confidence            356778888887777776651           12 2232 9999999999999999999876533               


Q ss_pred             -------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhc-----cCCcEEEEEeCCCCCCcHHH
Q psy2281          63 -------------------VIILNETDHLT-----------REAQQALRRTMEKY-----ITTCRLILCANSMSQVIPAI  107 (287)
Q Consensus        63 -------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~-----~~~~~~i~~~~~~~~l~~~l  107 (287)
                                         +|+|||+|.+.           ...+..+...+...     ..+..++.++|..+.+.+++
T Consensus       208 ~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~al  287 (389)
T PRK03992        208 EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAI  287 (389)
T ss_pred             chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHH
Confidence                               89999999863           22333444444322     12455777777778888888


Q ss_pred             hc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH----HcCCcHHHHHHHHH
Q psy2281         108 RS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ----QSDRNLRRAILMCE  163 (287)
Q Consensus       108 ~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~----~s~G~~r~al~~l~  163 (287)
                      .+  |+ ..+.|+.|+.++..++++..+....+. .+.....++.    ++++|++..+...-
T Consensus       288 lRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~  349 (389)
T PRK03992        288 LRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAG  349 (389)
T ss_pred             cCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            75  66 468999999999999999887765553 1123445555    45556665444433

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.45  E-value=3.7e-15  Score=140.43  Aligned_cols=178  Identities=19%  Similarity=0.159  Sum_probs=122.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++++||+|+|||||++.+++...+.  .|.+|+.+. ..-....+++.+.+++|++.++ ..|.
T Consensus       350 iL~~inl~i~~G~~--v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i-~~~~~~~~r~~i~~v~Q~~~lf-~~Ti  425 (588)
T PRK13657        350 GVEDVSFEAKPGQT--VAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI-RTVTRASLRRNIAVVFQDAGLF-NRSI  425 (588)
T ss_pred             eecceeEEECCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh-hhCCHHHHHhheEEEecCcccc-cccH
Confidence            45666666688998  9999999999999999999998766  888998663 2223556788899999887544 4556


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+|+..+         -+..+++++...++..     +.+..-.++....+.-..+|||+.||     |+...+.++++|
T Consensus       426 ~~Ni~~~---------~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLD  496 (588)
T PRK13657        426 EDNIRVG---------RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILD  496 (588)
T ss_pred             HHHHhcC---------CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            6665321         1234566655554432     11110001111112223489998888     777778899999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|+.+...+.+.+.++.+.   ++++|+...+. .+|+++.+
T Consensus       497 Epts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l  542 (588)
T PRK13657        497 EATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVF  542 (588)
T ss_pred             CCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEE
Confidence            999999999888888888776433   77999987654 47777655

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.45  E-value=6.1e-15  Score=121.17  Aligned_cols=162  Identities=10%  Similarity=0.028  Sum_probs=102.0

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEE-EeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VII-LNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~-ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      ++..+++|++  +.|.||||+|||||++++++...+.  .|. +++... .          ++   +...++...+..++
T Consensus         6 vs~~i~~Ge~--~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-~----------~~---~~~~l~~~ltv~en   69 (213)
T PRK15177          6 TDFVMGYHEH--IGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-P----------LG---ANSFILPGLTGEEN   69 (213)
T ss_pred             eeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-c----------cc---cccccCCcCcHHHH
Confidence            3444577888  9999999999999999999987644  332 444221 0          11   11222222233344


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +.....       +...+.++....+   .+..++  ++.....+..+|+|+.+|     |+...|.++++|||++.+|.
T Consensus        70 l~~~~~-------~~~~~~~~~~~~~---~~~~~l--~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~  137 (213)
T PRK15177         70 ARMMAS-------LYGLDGDEFSHFC---YQLTQL--EQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN  137 (213)
T ss_pred             HHHHHH-------HcCCCHHHHHHHH---HHHhCh--hHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence            433221       1123333333222   223344  455566778899998888     56666788999999999998


Q ss_pred             ccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHh
Q psy2281         178 IVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                      .....+.+.+.+..+.   ++++|+...+..++|+++.+..
T Consensus       138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~  178 (213)
T PRK15177        138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLH  178 (213)
T ss_pred             HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEEC
Confidence            8777666655433322   7799999999999998875533

>KOG0738|consensus

Probab=99.45  E-value=5e-12  Score=108.24  Aligned_cols=145  Identities=22%  Similarity=0.281  Sum_probs=101.9

Q ss_pred             CCCCccCcHHHHHHHHHHH----------hcCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC-----------------
Q psy2281          12 NLQKLDFHCKQANHLRNLL----------KEGDFPH--LLFYGPSGAGKKTRIMALLKELYGP-----------------   62 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~----------~~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------   62 (287)
                      .++++.|..++++.|+..+          +....|=  ++++||||+|||.|+++++.+...+                 
T Consensus       210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeS  289 (491)
T KOG0738|consen  210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGES  289 (491)
T ss_pred             ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccch
Confidence            5788999999988888776          2223332  9999999999999999999887543                 


Q ss_pred             -----------------EEEEeCCCCCCH------------HHHHHHHHHHHhcc---CC--cEEEEEeCCCC-CCcHHH
Q psy2281          63 -----------------VIILNETDHLTR------------EAQQALRRTMEKYI---TT--CRLILCANSMS-QVIPAI  107 (287)
Q Consensus        63 -----------------~i~ide~d~l~~------------~~~~~l~~~i~~~~---~~--~~~i~~~~~~~-~l~~~l  107 (287)
                                       +|||||+|.+..            .....|+-.|+-+.   ++  .++++.+|+.+ .|.+++
T Consensus       290 EKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAl  369 (491)
T KOG0738|consen  290 EKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEAL  369 (491)
T ss_pred             HHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCCcchHHHH
Confidence                             999999998631            12345666665442   12  35677766654 799999


Q ss_pred             hccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHH
Q psy2281         108 RSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRR  157 (287)
Q Consensus       108 ~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~  157 (287)
                      +.|+ ..+.++.|+.+.....++..+....+. ++-.+..++    .+||.|++.
T Consensus       370 rRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~n  423 (491)
T KOG0738|consen  370 RRRLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITN  423 (491)
T ss_pred             HHHHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHH
Confidence            9999 457788888888888887776654432 222234444    466777777

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.45  E-value=1.5e-15  Score=145.59  Aligned_cols=178  Identities=17%  Similarity=0.140  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++++||+|+||||+++++++...+.  .|.+|+.+. ..-....+++.+.+++|++.++ ..+.
T Consensus       472 il~~i~l~i~~G~~--vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i-~~~~~~~~r~~i~~v~q~~~lf-~~ti  547 (694)
T TIGR01846       472 VLSNLNLDIKPGEF--IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL-AIADPAWLRRQMGVVLQENVLF-SRSI  547 (694)
T ss_pred             ccccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeh-hhCCHHHHHHhCeEEccCCeeh-hhhH
Confidence            45566666688988  9999999999999999999998765  889998763 2223456788899999887544 3455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+|+...         -+..+.+++.+.++..     +......++....+.-..+|+|+.||     |+...+.++++|
T Consensus       548 ~eNi~~~---------~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililD  618 (694)
T TIGR01846       548 RDNIALC---------NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFD  618 (694)
T ss_pred             HHHHhcC---------CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            5665321         1234555555544432     11111011222222234688998888     777788999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|..+...+.+.+.++...   ++.+|+...+.. +|+++.+
T Consensus       619 Epts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l  664 (694)
T TIGR01846       619 EATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVL  664 (694)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEE
Confidence            999999999988888888877433   779999987765 7877655

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.44  E-value=2e-15  Score=144.84  Aligned_cols=178  Identities=16%  Similarity=0.149  Sum_probs=123.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.++||+|+|||||++.+++...+.  .|.+|+.+. ..-....+++.+.+++|++.++ ..|.
T Consensus       480 vL~~i~l~i~~G~~--iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l-~~~~~~~lr~~i~~v~Q~~~lf-~~TI  555 (694)
T TIGR03375       480 ALDNVSLTIRPGEK--VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI-RQIDPADLRRNIGYVPQDPRLF-YGTL  555 (694)
T ss_pred             ceeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEh-hhCCHHHHHhccEEECCChhhh-hhhH
Confidence            45666666788998  9999999999999999999988766  899998763 3323566888999999888544 4566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHH-----HHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC-----KKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+|+...         -+..+++++.+.++...     +.....++...-+.-..+|||+.||     |+...+.++++|
T Consensus       556 ~eNi~~~---------~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLD  626 (694)
T TIGR03375       556 RDNIALG---------APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD  626 (694)
T ss_pred             HHHHhCC---------CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            6666431         11246666655554421     1110001111112223588898877     677778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |||+++|..+...+.+.+.++.+.   ++++|+...+. .+|+++.+
T Consensus       627 E~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl  672 (694)
T TIGR03375       627 EPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVM  672 (694)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence            999999999988888888877543   77899987664 56777654

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.44  E-value=4.8e-15  Score=139.42  Aligned_cols=175  Identities=14%  Similarity=0.120  Sum_probs=121.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +++.||+|+|||||++++++...+.  .|.+|+.+. +.-....+++.+.+++|++. ++..+.
T Consensus       347 il~~inl~i~~G~~--v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i-~~~~~~~~~~~i~~v~Q~~~-lf~~Ti  422 (571)
T TIGR02203       347 ALDSISLVIEPGET--VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL-ADYTLASLRRQVALVSQDVV-LFNDTI  422 (571)
T ss_pred             cccCeeEEecCCCE--EEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH-HhcCHHHHHhhceEEccCcc-cccccH
Confidence            45566666688998  9999999999999999999998765  889998763 33334567888999998875 445566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+|+...        .-+..+++++.+.++.    .|+.         ++...-+.=..+|||+.||     |+...+.+
T Consensus       423 ~~Ni~~~--------~~~~~~~~~i~~~l~~----~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i  490 (571)
T TIGR02203       423 ANNIAYG--------RTEQADRAEIERALAA----AYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI  490 (571)
T ss_pred             HHHHhcC--------CCCCCCHHHHHHHHHH----cChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            6666431        0013556655555443    3330         0111111113489998888     66677889


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|..+...+.+.+.+..+.   ++++|+...+ ..+|+++.+
T Consensus       491 llLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ii~l  540 (571)
T TIGR02203       491 LILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRIVVM  540 (571)
T ss_pred             EEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCEEEEE
Confidence            9999999999999988888888877543   6789988554 457776644

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.44  E-value=4.4e-15  Score=121.62  Aligned_cols=163  Identities=18%  Similarity=0.155  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  +.+.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++..++. .+.
T Consensus        23 ~l~~isl~i~~G~~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~~~~-~tv   98 (207)
T cd03369          23 VLKNVSFKVKAGEK--IGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDI-STIPLEDLRSSLTIIPQDPTLFS-GTI   98 (207)
T ss_pred             cccCceEEECCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEh-HHCCHHHHHhhEEEEecCCcccC-ccH
Confidence            45566666688988  9999999999999999999987654  677887542 11112234556777777764432 234


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..          +...+.+++.+.+.       +      ......+|+|+.||     |+...++++++|||+++
T Consensus        99 ~~~l~~----------~~~~~~~~~~~~l~-------~------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~  155 (207)
T cd03369          99 RSNLDP----------FDEYSDEEIYGALR-------V------SEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS  155 (207)
T ss_pred             HHHhcc----------cCCCCHHHHHHHhh-------c------cCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence            344321          11223333333222       1      12345678887777     77778899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~  212 (287)
                      +|......+.+.+.++.+.   ++++|+.+.+.. +++++.
T Consensus       156 LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~  195 (207)
T cd03369         156 IDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILV  195 (207)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEE
Confidence            9998888888888776432   778999888765 676553

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK05907 hypothetical protein; Provisional

Probab=99.44  E-value=2e-10  Score=99.05  Aligned_cols=242  Identities=14%  Similarity=0.160  Sum_probs=168.6

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh-CCC----------------------------EEEEeCCCCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL-YGP----------------------------VIILNETDHLT   73 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~-~~~----------------------------~i~ide~d~l~   73 (287)
                      ...+...+++|+ |.|+++|..-   ....+.+...+ .++                            +|++.+.+.++
T Consensus         7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~~~fdg~~~~~~~ii~~aetlPfFaerRlV~v~~~~~~~   82 (311)
T PRK05907          7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRKSEFDGQGLLQQELLSWTEHFGLFASQETIGIYQAEKMS   82 (311)
T ss_pred             HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCccceecCCCCCHHHHHHHHhcCCcccCeEEEEEecccccc
Confidence            345555677888 7899999876   44444444433 221                            66666665555


Q ss_pred             HHHHHHHHHHHHhccCCcEEEEEeCCCCC---CcHHHhccccee----ecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q psy2281          74 REAQQALRRTMEKYITTCRLILCANSMSQ---VIPAIRSRCLCI----RIPAPTHEEIVSVLTNICKKEGLTIPPEFALR  146 (287)
Q Consensus        74 ~~~~~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~sr~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  146 (287)
                      ....+.|..+++.+++++.+++.+...+.   +...+. ....+    .|.++.+.++..|+...+++.|+.+++++.+.
T Consensus        83 ~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~-k~~~v~~~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~  161 (311)
T PRK05907         83 SSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLS-SALCLSLFGEWFADRDKRIAQLLIQRAKELGISCSLGLASL  161 (311)
T ss_pred             cccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHh-hcceeccccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence            54567899999999887666633322221   222233 24444    78889999999999999999999999999999


Q ss_pred             HHHHc-CCcHHHHHHHHHHHhhcC---CCccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhc-CCC
Q psy2281         147 LAQQS-DRNLRRAILMCEASKVQQ---YPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVH-SIP  219 (287)
Q Consensus       147 l~~~s-~G~~r~al~~l~~~~~~d---ep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~-~~~  219 (287)
                      +.+++ +||+..+.+.+++++++.   +.++..|  ..........++++.+.+...    +..+..+.+.+|+.. |.+
T Consensus       162 L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~----~~~~Al~il~~Ll~~~ge~  237 (311)
T PRK05907        162 FVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRR----DRVEGHSLLRSLLSDMGED  237 (311)
T ss_pred             HHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHcc----CHHHHHHHHHHHHHhcCCC
Confidence            99999 599999999999998873   2344333  334455666788888887665    444455556677788 888


Q ss_pred             HHHHHHHHHHH---HHHh---------------CChHHHHHHHHHHHHHhhHHhcCCCh-HHHHHHHHHHHHH
Q psy2281         220 VNVLFKYLLEG---LLAN---------------CDSDLKSKSIEMAAMFEHRIHKGSKP-IFHIEAYVASFMA  273 (287)
Q Consensus       220 ~~~i~~~~~~~---~~~~---------------~~~~~~~~~~~~~~~~~~~l~~g~~~-~~~l~~~i~~~~~  273 (287)
                      |-.|+.-+...   -.+.               ++...+.+++..+.+.|+.+++|..+ .+.+|.|+.+++.
T Consensus       238 p~~ILall~rQfl~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D~~iKtg~~d~~~~lElli~~~~~  310 (311)
T PRK05907        238 PLGIIAFLRSQCLYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAESLIKNNVQDPILAVETLVIRMTN  310 (311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            86665422222   1221               34567889999999999999997654 6689999988763

>PRK07452 DNA polymerase III subunit delta; Validated

Probab=99.44  E-value=9.5e-11  Score=102.70  Aligned_cols=211  Identities=16%  Similarity=0.171  Sum_probs=140.2

Q ss_pred             EEEEeCCCCC---CHHHHHHHHHHHHhccCCcEEEEEeCCC-C---CCcHHHhcccceeecCCC---CHHHHHHHHHHHH
Q psy2281          63 VIILNETDHL---TREAQQALRRTMEKYITTCRLILCANSM-S---QVIPAIRSRCLCIRIPAP---THEEIVSVLTNIC  132 (287)
Q Consensus        63 ~i~ide~d~l---~~~~~~~l~~~i~~~~~~~~~i~~~~~~-~---~l~~~l~sr~~~~~~~~~---~~~~~~~~l~~~~  132 (287)
                      +|++++++.+   +.+..+.|..+++.+++++.++++++.. +   +....++..+.+..|..+   +.+++..++...+
T Consensus        64 lVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~  143 (326)
T PRK07452         64 LVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTA  143 (326)
T ss_pred             EEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHH
Confidence            8888987654   4456678889999988888888764332 1   244456666666666544   4577999999999


Q ss_pred             HHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc----CCCcccccC--ccCccHHHHHHHHHHHHHhccChhHHHHH
Q psy2281         133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ----QYPFQIDQQ--IVEPDWKIYIRDTAKLIISEQSPKKLLEV  206 (287)
Q Consensus       133 ~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~----dep~~~~d~--~~~~~~~~~i~~l~~~i~~~~~~~~~~~~  206 (287)
                      ++.|+.+++++.+.+++..++|++.+.+.+++++++    +++++..|.  ..... ...++++.+.++... ...+..+
T Consensus       144 ~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~-~~~A~~~  221 (326)
T PRK07452        144 QELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGN-TGKALAL  221 (326)
T ss_pred             HHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCC-HHHHHHH
Confidence            999999999999999999999999999999999987    224554431  11111 123445555544331 1111111


Q ss_pred             HHHH------------------H------HHHhcCCC-HHHHHHH--H-HH-------HHHHhCChHHHHHHHHHHHHHh
Q psy2281         207 RTRL------------------Y------ELLVHSIP-VNVLFKY--L-LE-------GLLANCDSDLKSKSIEMAAMFE  251 (287)
Q Consensus       207 ~~~~------------------~------~l~~~~~~-~~~i~~~--~-~~-------~~~~~~~~~~~~~~~~~~~~~~  251 (287)
                      .+.+                  .      .+...|.+ ++.+.+.  + ++       ...++++.+.+..++..+.+.+
T Consensus       222 l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D  301 (326)
T PRK07452        222 LDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLE  301 (326)
T ss_pred             HHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            1111                  1      11224543 3323321  1 11       1223677888889999999999


Q ss_pred             hHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         252 HRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       252 ~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                      ..++.|..+...||.++.+++..+
T Consensus       302 ~~iK~g~~~~~~le~~i~~~~~~~  325 (326)
T PRK07452        302 ASLKQGANPINALQDKLIELCQLL  325 (326)
T ss_pred             HHHhcCCChHHHHHHHHHHHHHhh
Confidence            999999999889999999988754

>PRK06581 DNA polymerase III subunit delta'; Validated

Probab=99.44  E-value=4.1e-12  Score=103.13  Aligned_cols=102  Identities=12%  Similarity=0.173  Sum_probs=84.3

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH
Q psy2281          63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE  142 (287)
Q Consensus        63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  142 (287)
                      +++|+++|.++..+.++|++.+|+|++++.|++.++..+.++++++|||+.+.|..+......++....+.-.+   ++.
T Consensus        92 ViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~p~~---~~~  168 (263)
T PRK06581         92 VAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFIQPIA---DNK  168 (263)
T ss_pred             EEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhccccc---ccH
Confidence            99999999999999999999999999999999999999999999999999999999988777776665443322   455


Q ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhh
Q psy2281         143 FALRLAQQSDRNLRRAILMCEASKV  167 (287)
Q Consensus       143 ~~~~l~~~s~G~~r~al~~l~~~~~  167 (287)
                      .++.+.+.+.-|....+...+.+.+
T Consensus       169 ~l~~i~~~~~~d~~~w~~~~~~~~~  193 (263)
T PRK06581        169 TLDFINRFTTKDRELWLDFIDNLLL  193 (263)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6788887777777776666555544

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.44  E-value=2.2e-12  Score=117.29  Aligned_cols=130  Identities=21%  Similarity=0.292  Sum_probs=94.6

Q ss_pred             ccccCCCCCCCccCcHHHHHHHHHHHh-----------cCCC-C-cEEEeCCCCCcHHHHHHHHHHHhCC----------
Q psy2281           5 VDKYRPNNLQKLDFHCKQANHLRNLLK-----------EGDF-P-HLLFYGPSGAGKKTRIMALLKELYG----------   61 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~-~-~~~l~Gp~G~GKTtl~~~l~~~~~~----------   61 (287)
                      .+++.+.+++++.|....++.++..+.           .|-. | +++|+||||||||++++++++.+..          
T Consensus       173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~  252 (512)
T TIGR03689       173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS  252 (512)
T ss_pred             eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence            356677889999998888877777652           1222 2 2999999999999999999987521          


Q ss_pred             --------------------------------------CEEEEeCCCCCCHH------------HHHHHHHHHHhccC--
Q psy2281          62 --------------------------------------PVIILNETDHLTRE------------AQQALRRTMEKYIT--   89 (287)
Q Consensus        62 --------------------------------------~~i~ide~d~l~~~------------~~~~l~~~i~~~~~--   89 (287)
                                                            .+|+|||+|.+...            ....|+..++....  
T Consensus       253 ~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~  332 (512)
T TIGR03689       253 YFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLD  332 (512)
T ss_pred             eEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCC
Confidence                                                  08999999976321            12345555554432  


Q ss_pred             CcEEEEEeCCCCCCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKK  134 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~  134 (287)
                      +..+|.++|..+.+.+++++  |+. .+.|+.|+.++..+++...+..
T Consensus       333 ~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~  380 (512)
T TIGR03689       333 NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD  380 (512)
T ss_pred             ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence            34456666777889999987  774 5899999999999999888754

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2.3e-14  Score=127.24  Aligned_cols=174  Identities=22%  Similarity=0.247  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+++|+.  +.|.|++||||||+++.+++...++  -|.+.+.+.-.- ..+.+++.+...+|...++- .|
T Consensus       352 ~~L~~~~l~l~~GEk--vAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l-~~~~~~e~i~vl~Qr~hlF~-~T  427 (573)
T COG4987         352 KALKNFNLTLAQGEK--VAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL-DEQALRETISVLTQRVHLFS-GT  427 (573)
T ss_pred             chhhccceeecCCCe--EEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC-ChhhHHHHHhhhccchHHHH-HH
Confidence            467888888899999  9999999999999999999988766  677777653221 12346778887777765443 34


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHHH----HHcCCcHHH-----HHHHHHH
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPPEFALRLA----QQSDRNLRR-----AILMCEA  164 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l~----~~s~G~~r~-----al~~l~~  164 (287)
                      ..+|+..+         -+.-+++++.+.++.+    |+     +.++.....+.    .+|||+.||     ++.....
T Consensus       428 lr~NL~lA---------~~~AsDEel~~aL~qv----gL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dap  494 (573)
T COG4987         428 LRDNLRLA---------NPDASDEELWAALQQV----GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAP  494 (573)
T ss_pred             HHHHHhhc---------CCCCCHHHHHHHHHHc----CHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCC
Confidence            55555332         2334667777666553    33     11122222333    489999999     3444456


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~  212 (287)
                      +.++||||.++|+.+..++...+++-.+.   +++||....++. +|+++.
T Consensus       495 l~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~-~drIiv  544 (573)
T COG4987         495 LWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER-MDRIIV  544 (573)
T ss_pred             eEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh-cCEEEE
Confidence            77889999999999999999888887664   789999877775 466553

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.43  E-value=5.4e-15  Score=138.70  Aligned_cols=174  Identities=19%  Similarity=0.191  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +++.||||+||||+++++++...+.  .|.+|+.+. ..-....+++.+.+++|++.++ ..+.
T Consensus       330 ~l~~i~~~i~~G~~--~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~lf-~~ti  405 (569)
T PRK10789        330 ALENVNFTLKPGQM--LGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL-TKLQLDSWRSRLAVVSQTPFLF-SDTV  405 (569)
T ss_pred             cccCeeEEECCCCE--EEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEH-hhCCHHHHHhheEEEccCCeec-cccH
Confidence            55666666788988  9999999999999999999988765  788887652 2222456778888888887554 3456


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+|+..+         .+..+++++...++    ..++.         ++....+.-..+|+|+.||     |+...+.+
T Consensus       406 ~~Ni~~~---------~~~~~~~~~~~~~~----~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i  472 (569)
T PRK10789        406 ANNIALG---------RPDATQQEIEHVAR----LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI  472 (569)
T ss_pred             HHHHhcC---------CCCCCHHHHHHHHH----HcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            5665321         12235555544333    22320         0111112234589998888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|......+.+.+.++.+.   ++++|+...+.. +|+++.+
T Consensus       473 lllDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~-~d~i~~l  522 (569)
T PRK10789        473 LILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE-ASEILVM  522 (569)
T ss_pred             EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc-CCEEEEE
Confidence            9999999999999888888888776433   778999876654 6776544

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.43  E-value=3.5e-12  Score=116.05  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=103.5

Q ss_pred             CCCCCccCcHHHHHHHHHHH--------hcC-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLL--------KEG-DFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~--------~~g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      .+|+++.|...+++.+....        ..| ..|. ++|+||||||||++++++++....+                  
T Consensus       225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese  304 (489)
T CHL00195        225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESE  304 (489)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHH
Confidence            46888999877776665432        123 2233 9999999999999999999987533                  


Q ss_pred             ----------------EEEEeCCCCCCHH------------HHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhc--cc-
Q psy2281          63 ----------------VIILNETDHLTRE------------AQQALRRTMEKYITTCRLILCANSMSQVIPAIRS--RC-  111 (287)
Q Consensus        63 ----------------~i~ide~d~l~~~------------~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~s--r~-  111 (287)
                                      +++|||+|.+...            ....+...+........++.++|..+.+++++.+  |+ 
T Consensus       305 ~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD  384 (489)
T CHL00195        305 SRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFD  384 (489)
T ss_pred             HHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCC
Confidence                            8999999865321            1223444455433333455566677889999875  77 


Q ss_pred             ceeecCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHH----HcCCcHHHHHHHHHH
Q psy2281         112 LCIRIPAPTHEEIVSVLTNICKKEGLT-IPPEFALRLAQ----QSDRNLRRAILMCEA  164 (287)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~----~s~G~~r~al~~l~~  164 (287)
                      ..+.++.|+.++..++++..+.+.+.. .++.....+++    +||+|+++++...-.
T Consensus       385 ~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~  442 (489)
T CHL00195        385 EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMY  442 (489)
T ss_pred             eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence            368899999999999999988876532 22334555555    456677776554433

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.43  E-value=7.2e-15  Score=137.24  Aligned_cols=178  Identities=15%  Similarity=0.112  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+++|+.  ++++|||||||||+++++++...+.  .|.+|+.+. ..-....+++.+.+++|++.++ ..+
T Consensus       332 ~~l~~~~~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~lf-~~t  407 (544)
T TIGR01842       332 PTLRGISFRLQAGEA--LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADL-KQWDRETFGKHIGYLPQDVELF-PGT  407 (544)
T ss_pred             cccccceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeh-hhCCHHHHhhheEEecCCcccc-ccc
Confidence            345666666688988  9999999999999999999998765  788888653 2222345678888888887554 334


Q ss_pred             CCCCCcHHHhcccceeecC-CCCHHHHHHHHHH-----HHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281          99 SMSQVIPAIRSRCLCIRIP-APTHEEIVSVLTN-----ICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~-~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      ..+|+..          +. ..+++++.+.++.     .++...-.++....+.-..+|+|+.||     |+...+++++
T Consensus       408 i~~Ni~~----------~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ili  477 (544)
T TIGR01842       408 VAENIAR----------FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVV  477 (544)
T ss_pred             HHHHHhc----------cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            5555431          22 2455555444332     222221111222223345689998888     7777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHH--H--HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAK--L--IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~--~--i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|..+...+.+.+.++..  .  ++.+|+...+ ..+|+++.+
T Consensus       478 lDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l  526 (544)
T TIGR01842       478 LDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVL  526 (544)
T ss_pred             EeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEE
Confidence            9999999999988888888888752  2  6789998754 456776644

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.43  E-value=3.4e-15  Score=143.59  Aligned_cols=179  Identities=14%  Similarity=0.078  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|+||+|+|||||++.+++...+.  .|.+|+.+. ..-..+.+++.+.+++|++.+ +..|.
T Consensus       489 iL~~isl~i~~G~~--vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i-~~~~~~~lr~~i~~v~Q~~~l-f~gTI  564 (708)
T TIGR01193       489 ILSDISLTIKMNSK--TTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSL-KDIDRHTLRQFINYLPQEPYI-FSGSI  564 (708)
T ss_pred             ceeceeEEECCCCE--EEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEH-HHcCHHHHHHheEEEecCcee-hhHHH
Confidence            45566666688988  9999999999999999999988766  899998763 222356788899999998754 44566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+|+..+.        -+..+++++.+.++..     +......++...-+.-..+|||+.||     |+...+.++++|
T Consensus       565 ~eNi~l~~--------~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLD  636 (708)
T TIGR01193       565 LENLLLGA--------KENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILD  636 (708)
T ss_pred             HHHHhccC--------CCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence            66664320        0234555555444332     11110011111112223478888877     777778999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH--HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL--IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~--i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |||+++|..+...+.+.+.++...  |+++|....+. .+|+++.+
T Consensus       637 E~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l  681 (708)
T TIGR01193       637 ESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVL  681 (708)
T ss_pred             CccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEE
Confidence            999999998888777777765222  77899987664 46777654

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.43  E-value=5.1e-15  Score=138.95  Aligned_cols=174  Identities=20%  Similarity=0.228  Sum_probs=122.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +++.||||+||||+++++++...+.  .|.+|+.+ +..-....+++.+.+++|++.+ +..+.
T Consensus       355 il~~i~~~i~~G~~--~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~-i~~~~~~~~r~~i~~v~Q~~~l-f~~ti  430 (574)
T PRK11160        355 VLKGLSLQIKAGEK--VALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQP-IADYSEAALRQAISVVSQRVHL-FSATL  430 (574)
T ss_pred             ceecceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE-hhhCCHHHHHhheeEEcccchh-hcccH
Confidence            56666777789999  9999999999999999999988765  88899876 3322345678889999988754 34455


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC--------CCHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT--------IPPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------~~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      .+|+..+         .+..+++++.+.++    ..++.        ++...-+.-..+|+|+.||     |+...+.++
T Consensus       431 ~~Ni~~~---------~~~~~~~~i~~al~----~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~il  497 (574)
T PRK11160        431 RDNLLLA---------APNASDEALIEVLQ----QVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL  497 (574)
T ss_pred             HHHhhcC---------CCccCHHHHHHHHH----HcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            5665321         12245555544443    33331        0111122334589998888     777778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|..+...+.+.+.++.+.   ++++|....+.. +|+++.+
T Consensus       498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l  546 (574)
T PRK11160        498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVM  546 (574)
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEE
Confidence            999999999999888888888777543   678999877754 6776644

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=9.7e-16  Score=142.58  Aligned_cols=178  Identities=13%  Similarity=0.025  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|++  ++|.||||||||||+++|++.+.+.  .|.+++..            .+.+++++..++...+
T Consensus        15 ~il~~vsl~i~~Ge~--~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~------------~i~~~~q~~~~~~~~t   80 (530)
T PRK15064         15 PLFENISVKFGGGNR--YGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNE------------RLGKLRQDQFAFEEFT   80 (530)
T ss_pred             EeEeCCEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC------------EEEEEeccCCcCCCCc
Confidence            345566666788999  9999999999999999999987654  55555411            1222222221111111


Q ss_pred             CCCCCcHHHh---cc---c-ceee------------------cCCCCHHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHcC
Q psy2281          99 SMSQVIPAIR---SR---C-LCIR------------------IPAPTHEEIVSVLTNICKKEGLTIPPEFA-LRLAQQSD  152 (287)
Q Consensus        99 ~~~~l~~~l~---sr---~-~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~s~  152 (287)
                      ..+++..+..   ..   . ....                  +......+....+..+++..|+  ++... +.+.++|+
T Consensus        81 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~LSg  158 (530)
T PRK15064         81 VLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGI--PEEQHYGLMSEVAP  158 (530)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCC--ChhHhcCchhhcCH
Confidence            1122111100   00   0 0000                  0000111233456677888887  44333 46789999


Q ss_pred             CcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHHH
Q psy2281         153 RNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       153 G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      |+.+|     ++...|.++++|||++++|......+.+.+.+.-.. |+++|+...+..++++++.+-
T Consensus       159 Gq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~  226 (530)
T PRK15064        159 GWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLD  226 (530)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEe
Confidence            99888     666668999999999999998887777666532111 789999999999999887553

>CHL00176 ftsH cell division protein; Validated

Probab=99.42  E-value=1.1e-11  Score=116.31  Aligned_cols=151  Identities=20%  Similarity=0.314  Sum_probs=104.7

Q ss_pred             CCCCCccCcHHHHHHHHHHH---hc--------CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLL---KE--------GDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~---~~--------g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      .+|+++.|..+.++.+...+   +.        ...|. ++|+||||||||++++++++....+                
T Consensus       180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~  259 (638)
T CHL00176        180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGV  259 (638)
T ss_pred             CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhh
Confidence            47889999888777776665   11        12233 9999999999999999999876432                


Q ss_pred             ------------------EEEEeCCCCCCH-----------HHHHHH---HHHHHhccC--CcEEEEEeCCCCCCcHHHh
Q psy2281          63 ------------------VIILNETDHLTR-----------EAQQAL---RRTMEKYIT--TCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        63 ------------------~i~ide~d~l~~-----------~~~~~l---~~~i~~~~~--~~~~i~~~~~~~~l~~~l~  108 (287)
                                        +++|||+|.+..           ..+..+   +..++....  +..++.++|.++.+.++++
T Consensus       260 ~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALl  339 (638)
T CHL00176        260 GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALL  339 (638)
T ss_pred             hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhh
Confidence                              899999997732           122233   333433222  2345566666677888887


Q ss_pred             c--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHH
Q psy2281         109 S--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR----NLRRAILMC  162 (287)
Q Consensus       109 s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~l  162 (287)
                      +  |+ ..+.+..|+.+++.++++..++...+. ++.....+++.+.|    |++.+++..
T Consensus       340 RpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~d~~l~~lA~~t~G~sgaDL~~lvneA  399 (638)
T CHL00176        340 RPGRFDRQITVSLPDREGRLDILKVHARNKKLS-PDVSLELIARRTPGFSGADLANLLNEA  399 (638)
T ss_pred             ccccCceEEEECCCCHHHHHHHHHHHHhhcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            6  44 468899999999999999988875542 45567788876665    666665543

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.42  E-value=8.8e-16  Score=125.01  Aligned_cols=150  Identities=15%  Similarity=0.077  Sum_probs=97.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +.+.++..+.+|+.  ++|.||||+|||||++++++..  .+.  .|.+|+.+.-........+..+.++++...+    
T Consensus        15 ~l~~is~~i~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~----   88 (200)
T cd03217          15 ILKGVNLTIKKGEV--HALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPE----   88 (200)
T ss_pred             eeeccceEECCCcE--EEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhh----
Confidence            45566666788988  9999999999999999999984  232  6777775422111111111123333333211    


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                                        ++..+..+..       +.           ....+|+|+.|+     |+...|.++++|||+
T Consensus        89 ------------------~~~~~~~~~l-------~~-----------~~~~LS~G~~qrv~laral~~~p~illlDEPt  132 (200)
T cd03217          89 ------------------IPGVKNADFL-------RY-----------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPD  132 (200)
T ss_pred             ------------------ccCccHHHHH-------hh-----------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence                              1111111111       11           113567776666     777778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH----HHhccChhHHHH-HHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLE-VRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~-~~~~~~~l  213 (287)
                      +++|......+.+.+.++.+.    ++++|+...+.. .+++++.+
T Consensus       133 ~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l  178 (200)
T cd03217         133 SGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVL  178 (200)
T ss_pred             ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEE
Confidence            999999888888888888653    779999988777 67877644

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.42  E-value=5.5e-12  Score=112.04  Aligned_cols=150  Identities=23%  Similarity=0.355  Sum_probs=100.6

Q ss_pred             CCCCCCccCcHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLKE-----------G-DFPH-LLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~~-----------g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      ...++++.|.+..++.+...+..           | ..|. ++|+||||||||++++++++.+...              
T Consensus       118 ~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~  197 (364)
T TIGR01242       118 NVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYI  197 (364)
T ss_pred             CCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhh
Confidence            34567888888888777776521           1 1222 9999999999999999999876533              


Q ss_pred             --------------------EEEEeCCCCCC-----------HHHHHHHHHHHHh---c--cCCcEEEEEeCCCCCCcHH
Q psy2281          63 --------------------VIILNETDHLT-----------REAQQALRRTMEK---Y--ITTCRLILCANSMSQVIPA  106 (287)
Q Consensus        63 --------------------~i~ide~d~l~-----------~~~~~~l~~~i~~---~--~~~~~~i~~~~~~~~l~~~  106 (287)
                                          +|++||+|.+.           ...+..+...+..   .  ..+..++.++|..+.+.++
T Consensus       198 g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~a  277 (364)
T TIGR01242       198 GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPA  277 (364)
T ss_pred             hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChh
Confidence                                89999998763           1223444444432   2  2245677777778888888


Q ss_pred             Hhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHH
Q psy2281         107 IRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRRAIL  160 (287)
Q Consensus       107 l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~al~  160 (287)
                      +.+  |+ ..+.|+.|+.++..+++...+....+. ++.....+++.+    ++|++..+.
T Consensus       278 l~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~  337 (364)
T TIGR01242       278 LLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICT  337 (364)
T ss_pred             hcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHH
Confidence            875  55 468899999999999998877665542 112345555544    445555444

Many proteins may score above the trusted cutoff because an internal

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.41  E-value=7.5e-15  Score=138.03  Aligned_cols=176  Identities=19%  Similarity=0.145  Sum_probs=119.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||+||||+++.+++...+.  .|.+|+.+. ..-....+++.+.+++|++.++ ..+.
T Consensus       350 ~l~~i~~~i~~G~~--~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~-~~~~~~~~~~~i~~v~q~~~lf-~~ti  425 (585)
T TIGR01192       350 GVFDVSFEAKAGQT--VAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI-NTVTRESLRKSIATVFQDAGLF-NRSI  425 (585)
T ss_pred             cccceeEEEcCCCE--EEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEh-hhCCHHHHHhheEEEccCCccC-cccH
Confidence            45556666688988  9999999999999999999988765  788888653 2222345677888888887544 3344


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHHh--CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKE--GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~--~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      .+|+..+         -+..+++++.+.++..     +...  |+  +....+....+|+|+.||     |+...|++++
T Consensus       426 ~~Ni~~~---------~~~~~~~~~~~a~~~~~~~~~i~~l~~g~--~t~~~~~~~~LSgGq~qrl~lARall~~p~ili  494 (585)
T TIGR01192       426 RENIRLG---------REGATDEEVYEAAKAAAAHDFILKRSNGY--DTLVGERGNRLSGGERQRLAIARAILKNAPILV  494 (585)
T ss_pred             HHHHhcC---------CCCCCHHHHHHHHHHhCcHHHHHhccccc--cchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            4444221         1223455555444321     1111  22  222223344689998888     6777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|..+...+.+.+.++.+.   ++++|+...+.. +|+++.+
T Consensus       495 lDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~-~d~i~~l  542 (585)
T TIGR01192       495 LDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN-ADLVLFL  542 (585)
T ss_pred             EECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc-CCEEEEE
Confidence            99999999999888888888776433   779999877754 7776644

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.41  E-value=6.8e-15  Score=141.24  Aligned_cols=173  Identities=16%  Similarity=0.135  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|+||+|+||||+++.|++...+.  .|.+|+.+. ..-....+++.+.+++|++.+ +..|.
T Consensus       496 vL~~isl~i~~Ge~--vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i-~~~~~~~lr~~i~~v~Q~~~l-F~gTI  571 (711)
T TIGR00958       496 VLKGLTFTLHPGEV--VALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPL-VQYDHHYLHRQVALVGQEPVL-FSGSV  571 (711)
T ss_pred             cccCceEEEcCCCE--EEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEH-HhcCHHHHHhhceEEecCccc-cccCH
Confidence            56666667789999  9999999999999999999998766  889998763 222356778889999998754 44566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+|+..+         .+..+++++.+.++.    .++.         ++...-+.-.++|||+.||     |+...+.+
T Consensus       572 reNI~~g---------~~~~~~e~i~~al~~----a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I  638 (711)
T TIGR00958       572 RENIAYG---------LTDTPDEEIMAAAKA----ANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV  638 (711)
T ss_pred             HHHHhcC---------CCCCCHHHHHHHHHH----cCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence            6776432         123345555544433    3320         1111111223589998888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH--HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL--IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~--i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|..+...+.+ .....+.  ++++|....+.. +|+++.+
T Consensus       639 LILDEpTSaLD~~te~~i~~-~~~~~~~TvIiItHrl~~i~~-aD~IivL  686 (711)
T TIGR00958       639 LILDEATSALDAECEQLLQE-SRSRASRTVLLIAHRLSTVER-ADQILVL  686 (711)
T ss_pred             EEEEccccccCHHHHHHHHH-hhccCCCeEEEEeccHHHHHh-CCEEEEE
Confidence            99999999999876555444 1111111  778999876654 6776654

>PLN03140 ABC transporter G family member; Provisional

Probab=99.41  E-value=4e-15  Score=150.81  Aligned_cols=180  Identities=14%  Similarity=0.078  Sum_probs=128.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      +++.++..+++|++  ++|.||||+|||||+++|++...+.    .|.+++.+. .   ...+++.+.+++|+..++...
T Consensus       895 iL~~vs~~i~~Gel--~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~-~---~~~~~~~igyv~Q~d~~~~~l  968 (1470)
T PLN03140        895 LLREVTGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK-K---QETFARISGYCEQNDIHSPQV  968 (1470)
T ss_pred             EeeCcEEEEECCeE--EEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC-C---hHHhhhheEEEccccccCCCC
Confidence            34445555578888  9999999999999999999976421    567777552 2   123455678888876666666


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH-----HHHcCCcHHH-----HHHHHHHHhh
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL-----AQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l-----~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      ++.+++..+..-|.    -...+.++..+.+.++++..++  ++.....+     ..+|+|+.||     ++...|++++
T Consensus       969 TV~E~L~~~a~lr~----~~~~~~~~~~~~v~~vl~~lgL--~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~ 1042 (1470)
T PLN03140        969 TVRESLIYSAFLRL----PKEVSKEEKMMFVDEVMELVEL--DNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1042 (1470)
T ss_pred             cHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHHHCCC--hhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEE
Confidence            67677655433121    1123455666778888888887  33333333     3699999888     7777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH----HHhccChh-HHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPK-KLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~-~~~~~~~~~~~l  213 (287)
                      +|||++++|......+.+.++++.+.    ++++|++. .+...+|+++.+
T Consensus      1043 LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL 1093 (1470)
T PLN03140       1043 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLM 1093 (1470)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEE
Confidence            99999999999999999999998765    67889987 466677766543

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.40  E-value=1.3e-14  Score=147.28  Aligned_cols=178  Identities=15%  Similarity=0.100  Sum_probs=127.5

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---P--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      ++.++..+++|+.  +.|.||||+|||||+++|++...+   .  .|.+|+.+. ..    .+++.+.+++|+..++...
T Consensus       779 L~~vs~~i~~Ge~--~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~-~~----~~~~~i~yv~Q~~~~~~~~  851 (1394)
T TIGR00956       779 LNNVDGWVKPGTL--TALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPL-DS----SFQRSIGYVQQQDLHLPTS  851 (1394)
T ss_pred             eeCCEEEEECCEE--EEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEEC-Ch----hhhcceeeecccccCCCCC
Confidence            3444444577888  999999999999999999998752   1  678888663 21    3566788888876666666


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHH-----HHHHHHH-Hhh
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRR-----AILMCEA-SKV  167 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~-----al~~l~~-~~~  167 (287)
                      |+.+++....+-|.    -...+.++..+.+.++++..++  .+.....+.    .+|+|+.||     ++...|+ +++
T Consensus       852 Tv~E~L~~~a~l~~----~~~~~~~~~~~~v~~~l~~l~L--~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLl  925 (1394)
T TIGR00956       852 TVRESLRFSAYLRQ----PKSVSKSEKMEYVEEVIKLLEM--ESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLF  925 (1394)
T ss_pred             CHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHHHcCC--hhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEE
Confidence            77777665433121    0123556667788888888887  333333343    699999888     5666675 889


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH----HHhccChhH-HHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKK-LLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~-~~~~~~~~~~l  213 (287)
                      +|||++++|......+.+.++++.+.    |+++|++.. +...+|++..+
T Consensus       926 LDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L  976 (1394)
T TIGR00956       926 LDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLL  976 (1394)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEE
Confidence            99999999999999999999998765    678899875 34566776544

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.40  E-value=1.3e-15  Score=142.39  Aligned_cols=178  Identities=15%  Similarity=0.031  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      ..+.+.++..+.+|++  ++|.||||||||||+++|++.+.+.  .|.++..            ..+.+++|++.++...
T Consensus        20 ~~il~~vs~~i~~Ge~--~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~   85 (556)
T PRK11819         20 KQILKDISLSFFPGAK--IGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG------------IKVGYLPQEPQLDPEK   85 (556)
T ss_pred             CeeeeCceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEecCCCCCCCC
Confidence            3456677777789999  9999999999999999999987654  4444421            1244455554333222


Q ss_pred             CCCCCCcHHHhc------cccee--ecCCC---------------------CHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2281          98 NSMSQVIPAIRS------RCLCI--RIPAP---------------------THEEIVSVLTNICKKEGLTIPPEFALRLA  148 (287)
Q Consensus        98 ~~~~~l~~~l~s------r~~~~--~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  148 (287)
                      +..+++..++..      +....  .+...                     ...+....+...++..|+  +. ..+.+.
T Consensus        86 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl--~~-~~~~~~  162 (556)
T PRK11819         86 TVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC--PP-WDAKVT  162 (556)
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC--Cc-ccCchh
Confidence            333443322110      00000  00000                     001123455666777777  32 456778


Q ss_pred             HHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHHH
Q psy2281         149 QQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       149 ~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++|+|+.+|     ++...|.++++|||++++|......+.+.+.++... |+++|+.+.+..++++++.+-
T Consensus       163 ~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~  234 (556)
T PRK11819        163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELD  234 (556)
T ss_pred             hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEe
Confidence            999999888     666668999999999999998888777777665333 779999999999999887553

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.40  E-value=5.3e-12  Score=123.10  Aligned_cols=163  Identities=17%  Similarity=0.235  Sum_probs=121.6

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      .+.++.||..++.++|+.+.+..+...+..+..++.+|+||||+|||++++.++..+...                    
T Consensus       162 ~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~  241 (852)
T TIGR03346       162 DLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALI  241 (852)
T ss_pred             hHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHh
Confidence            356788999999999999988888888877777779999999999999999998775210                    


Q ss_pred             ---------------------------EEEEeCCCCCCH--------HHHHHHHHHHHhccCCcEEEEEeCCCC-----C
Q psy2281          63 ---------------------------VIILNETDHLTR--------EAQQALRRTMEKYITTCRLILCANSMS-----Q  102 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~~--------~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~  102 (287)
                                                 +++|||+|.+..        +..+.|...++.  ....+|.++|..+     +
T Consensus       242 a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaTt~~e~r~~~~  319 (852)
T TIGR03346       242 AGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGATTLDEYRKYIE  319 (852)
T ss_pred             hcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeCcHHHHHHHhh
Confidence                                       899999997642        223344433331  2334555555432     3


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHHH------HHHHHHHHhh
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNLRR------AILMCEASKV  167 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~r~------al~~l~~~~~  167 (287)
                      ..+++.+||+.+.++.|+.++...++.....+    .++.+.++++..++.+|.+-+..      |+..++..+.
T Consensus       320 ~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a  394 (852)
T TIGR03346       320 KDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA  394 (852)
T ss_pred             cCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence            68899999999999999999999988776555    35667899999999988765433      7777776553

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.40  E-value=1.3e-14  Score=122.80  Aligned_cols=175  Identities=14%  Similarity=0.117  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  ++|.||||+|||||+++|++...+.  .|.+++.+. .......+++.+.+++++..++. .+.
T Consensus        36 il~~isl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i-~~~~~~~~~~~i~~v~q~~~l~~-~tv  111 (257)
T cd03288          36 VLKHVKAYIKPGQK--VGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDI-SKLPLHTLRSRLSIILQDPILFS-GSI  111 (257)
T ss_pred             ceeEEEEEEcCCCE--EEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEh-hhCCHHHHhhhEEEECCCCcccc-cHH
Confidence            34455555578888  9999999999999999999987644  778887652 22112344566777777664432 233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHH-----HHHHHHh--CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVL-----TNICKKE--GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l-----~~~~~~~--~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      .+++...          ...........+     ...++..  ++  +.........+|+|+.|+     |+...|++++
T Consensus       112 ~~nl~~~----------~~~~~~~~~~~l~~~~l~~~~~~~~~~l--~~~~~~~~~~LS~G~~qrl~laral~~~p~lll  179 (257)
T cd03288         112 RFNLDPE----------CKCTDDRLWEALEIAQLKNMVKSLPGGL--DAVVTEGGENFSVGQRQLFCLARAFVRKSSILI  179 (257)
T ss_pred             HHhcCcC----------CCCCHHHHHHHHHHhCcHHHHhhccccc--CcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            3333210          011122222211     1122221  22  222223345789998888     6777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|+.....+.+.+.++.+.   ++++|+...+.. +++++.+
T Consensus       180 lDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l  227 (257)
T cd03288         180 MDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVL  227 (257)
T ss_pred             EeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEE
Confidence            99999999988877777777665332   678999988875 7777654

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.39  E-value=1.9e-15  Score=141.15  Aligned_cols=167  Identities=13%  Similarity=0.064  Sum_probs=111.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +++.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++ + .          .+.+++++.. +....+
T Consensus       337 ~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~-~----------~i~~v~q~~~~~~~~~t  402 (552)
T TIGR03719       337 LIDDLSFKLPPGGI--VGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T-V----------KLAYVDQSRDALDPNKT  402 (552)
T ss_pred             eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-e----------EEEEEeCCccccCCCCc
Confidence            45556666688999  9999999999999999999987654  444443 1 0          2445555431 222122


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      ..+++..+..       .......+  .....+++..++  .. ...+.+.++|+|+.+|     ++...+.++++|||+
T Consensus       403 v~e~l~~~~~-------~~~~~~~~--~~~~~~l~~~~l--~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt  471 (552)
T TIGR03719       403 VWEEISGGLD-------IIQLGKRE--VPSRAYVGRFNF--KGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT  471 (552)
T ss_pred             HHHHHHhhcc-------ccccCcch--HHHHHHHHhCCC--ChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence            2223222111       11111111  123356666776  43 3456788999999988     677778999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++... |+++|+...+..++++++.+
T Consensus       472 ~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l  513 (552)
T TIGR03719       472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAF  513 (552)
T ss_pred             CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEE
Confidence            999999888888777776323 77999999999999987754

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>KOG0055|consensus

Probab=99.39  E-value=3.8e-14  Score=137.14  Aligned_cols=177  Identities=16%  Similarity=0.098  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..++.|+.  +.|+||+||||||.+..|-+...++  .|.||+.|. ..-..+.||+.|.-++|.+.+ +.+|
T Consensus      1004 ~Il~~l~l~i~~GqT--vALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~di-k~lnl~~LR~~i~lVsQEP~L-F~~T 1079 (1228)
T KOG0055|consen 1004 PVLNNLSLSIRAGQT--VALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDI-KDLNLKWLRKQIGLVSQEPVL-FNGT 1079 (1228)
T ss_pred             hhhcCCcEEecCCCE--EEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccc-ccCCHHHHHHhcceeccCchh-hccc
Confidence            345666666788988  9999999999999999999998776  899998774 222367899999999998864 5567


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh---CC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE---GL--TIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~---~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      ..+|+..+.         ...+.+++.+.++..=...   ++  .++..+-++=.++|||+.||     |+.-.|+++++
T Consensus      1080 IrENI~YG~---------~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLL 1150 (1228)
T KOG0055|consen 1080 IRENIAYGS---------EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLL 1150 (1228)
T ss_pred             HHHHHhccC---------CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeee
Confidence            888887761         1256777776665421110   11  12333444455788998888     88888999999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~  211 (287)
                      ||.|+++|..+.+.+.+.++.....   +++.|....++. +|.++
T Consensus      1151 DEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~ 1195 (1228)
T KOG0055|consen 1151 DEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIA 1195 (1228)
T ss_pred             eccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEE
Confidence            9999999999888777777776554   678888777765 34444

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.39  E-value=1.5e-15  Score=141.23  Aligned_cols=166  Identities=14%  Similarity=0.113  Sum_probs=110.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR--LILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~   97 (287)
                      +.+.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++.            +.+.+++++..  +....
T Consensus       334 ~l~~is~~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~~~q~~~~~~~~~~  399 (530)
T PRK15064        334 LFKNLNLLLEAGER--LAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------------ANIGYYAQDHAYDFENDL  399 (530)
T ss_pred             eecCcEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc------------eEEEEEcccccccCCCCC
Confidence            44555566688988  9999999999999999999987654  5656541            12444444332  11011


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..++    +..      +....  ...+.+...++..++. .+.....+.++|+|+.||     ++...+.++++|||+
T Consensus       400 t~~~~----~~~------~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt  466 (530)
T PRK15064        400 TLFDW----MSQ------WRQEG--DDEQAVRGTLGRLLFS-QDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT  466 (530)
T ss_pred             cHHHH----HHH------hccCC--ccHHHHHHHHHHcCCC-hhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            11111    110      11111  1123455667777762 234566788999999988     666678899999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      +++|......+.+.+.++... |+++|+...+..++++++.+.
T Consensus       467 ~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~  509 (530)
T PRK15064        467 NHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEIT  509 (530)
T ss_pred             CCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence            999999888777777665222 779999999999999887553

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.39  E-value=2e-14  Score=114.05  Aligned_cols=113  Identities=19%  Similarity=0.136  Sum_probs=84.9

Q ss_pred             HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHH
Q psy2281          29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA  106 (287)
Q Consensus        29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~  106 (287)
                      .+++|++  +.|.||||+|||||++++++...+.  .|.+++.+             +.+.++                 
T Consensus        21 ~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-------------i~~~~q-----------------   68 (177)
T cd03222          21 VVKEGEV--IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-------------PVYKPQ-----------------   68 (177)
T ss_pred             EECCCCE--EEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-------------EEEEcc-----------------
Confidence            4478888  9999999999999999999987654  56666521             000000                 


Q ss_pred             HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCc
Q psy2281         107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEP  181 (287)
Q Consensus       107 l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~  181 (287)
                                 .+.                             +|+|+.|+     ++...+.++++|||++++|.....
T Consensus        69 -----------~~~-----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~  108 (177)
T cd03222          69 -----------YID-----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRL  108 (177)
T ss_pred             -----------cCC-----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHH
Confidence                       000                             56665555     777778999999999999999988


Q ss_pred             cHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         182 DWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       182 ~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .+.+.+.++.++     ++++|+...+..++++++.+
T Consensus       109 ~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l  145 (177)
T cd03222         109 NAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVF  145 (177)
T ss_pred             HHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEE
Confidence            888888887642     77999999999888877644

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.39  E-value=3.1e-14  Score=117.54  Aligned_cols=172  Identities=12%  Similarity=0.105  Sum_probs=105.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH---HHHHHHHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE---AQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~---~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      +.+.++..+.+|++  ++|.||||+|||||+++|++...+.  .|.+++.+.....   .....++.+.+++++..++ .
T Consensus        16 il~~vs~~i~~Ge~--~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-~   92 (218)
T cd03290          16 TLSNINIRIPTGQL--TMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-N   92 (218)
T ss_pred             ceeeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-c
Confidence            44455556678888  9999999999999999999987654  6778875432111   0112234466666665443 2


Q ss_pred             eCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHH
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMC  162 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l  162 (287)
                      .+..+++...          ...+.+..    ...++..++.         .+......+..+|+|+.||     |+...
T Consensus        93 ~t~~~nl~~~----------~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~  158 (218)
T cd03290          93 ATVEENITFG----------SPFNKQRY----KAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN  158 (218)
T ss_pred             ccHHHHHhhc----------CcCCHHHH----HHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence            3333333221          01122221    2233333331         0011123456799998888     77777


Q ss_pred             HHHhhcCCCcccccCccCccHHH--HHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         163 EASKVQQYPFQIDQQIVEPDWKI--YIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       163 ~~~~~~dep~~~~d~~~~~~~~~--~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      |.++++|||++++|......+.+  .+..+.+.    ++++|+...+. .+++++
T Consensus       159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~  212 (218)
T cd03290         159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWII  212 (218)
T ss_pred             CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEE
Confidence            89999999999999887776665  44444432    77899987764 455543

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.39  E-value=1.7e-15  Score=123.78  Aligned_cols=162  Identities=14%  Similarity=0.064  Sum_probs=98.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|++  ++|.||||+|||||++++++...+.  .|.+++              .+.++++++.++ ..+.
T Consensus        20 il~~~s~~i~~G~~--~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g--------------~i~~~~q~~~l~-~~t~   82 (204)
T cd03250          20 TLKDINLEVPKGEL--VAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG--------------SIAYVSQEPWIQ-NGTI   82 (204)
T ss_pred             eeeeeeEEECCCCE--EEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------EEEEEecCchhc-cCcH
Confidence            55666677789999  9999999999999999999987655  666776              244455554432 2233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHH-----HHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT-----NICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      .+++....          ..+.+.....++     ..+......++.........+|+|+.||     |+...|+++++|
T Consensus        83 ~enl~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD  152 (204)
T cd03250          83 RENILFGK----------PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD  152 (204)
T ss_pred             HHHhccCC----------CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            33332210          111211111111     1111110001111223345688898877     777888999999


Q ss_pred             CCcccccCccCccHHH-HHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKI-YIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~-~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      ||++++|......+.+ .+.+..+.    ++++|+...+.. +++++
T Consensus       153 EP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~  198 (204)
T cd03250         153 DPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIV  198 (204)
T ss_pred             CccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEE
Confidence            9999999887766655 34444332    778899877766 66543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK05629 hypothetical protein; Validated

Probab=99.38  E-value=4.8e-10  Score=97.82  Aligned_cols=235  Identities=17%  Similarity=0.158  Sum_probs=153.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC---CcHHHhcccc
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ---VIPAIRSRCL  112 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~sr~~  112 (287)
                      ..+.|.. +....+..+..--++++  +|++++.+.......+.+..++..+++++.+|++++....   +...++..+.
T Consensus        41 ~~~d~~e-~~~~~l~~~~t~slF~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~  119 (318)
T PRK05629         41 TTLKASE-VSQGELLDALSPSLFGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAV  119 (318)
T ss_pred             EEeeccc-CCHHHHHHhhCcCccCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcce
Confidence            5666653 33466665432222223  8889987655444556778888888877777777654322   3345666777


Q ss_pred             eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc-CCCccccc--CccCccHHHHHHH
Q psy2281         113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQ--QIVEPDWKIYIRD  189 (287)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~-dep~~~~d--~~~~~~~~~~i~~  189 (287)
                      ++.+.++...++..|+.+.++..|+++++++.+++++.+++|+..+-+.+++++++ +++++..|  ..........+++
T Consensus       120 ~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~  199 (318)
T PRK05629        120 VHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFD  199 (318)
T ss_pred             EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHH
Confidence            88998999999999999999999999999999999999999999999999998765 33444433  1122233345666


Q ss_pred             HHHHHHhccChhHHHHHHH--------------------HHHHHH-hcC-CCHHHHHHH--HHHH-------HHHhCChH
Q psy2281         190 TAKLIISEQSPKKLLEVRT--------------------RLYELL-VHS-IPVNVLFKY--LLEG-------LLANCDSD  238 (287)
Q Consensus       190 l~~~i~~~~~~~~~~~~~~--------------------~~~~l~-~~~-~~~~~i~~~--~~~~-------~~~~~~~~  238 (287)
                      +.+.+........+..+.+                    .+..+. ..| .+...+.+.  ++++       ..+.++..
T Consensus       200 l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~  279 (318)
T PRK05629        200 IADLACAGQVSKAVASTRRALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGD  279 (318)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHH
Confidence            6666544422111111111                    011121 122 133333321  2222       22256778


Q ss_pred             HHHHHHHHHHHHhhHHhcCC-ChHHHHHHHHHHHHH
Q psy2281         239 LKSKSIEMAAMFEHRIHKGS-KPIFHIEAYVASFMA  273 (287)
Q Consensus       239 ~~~~~~~~~~~~~~~l~~g~-~~~~~l~~~i~~~~~  273 (287)
                      .+.+++..+.+.|..++.|. ++.+.||.++.++..
T Consensus       280 ~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~~~~~  315 (318)
T PRK05629        280 AVSEAVILMADLDAAVKGQGGDPEFAIESAVRRVAE  315 (318)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHh
Confidence            88899999999999999855 888899999988765

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.38  E-value=2.8e-15  Score=140.08  Aligned_cols=167  Identities=12%  Similarity=0.054  Sum_probs=111.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc-EEEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC-RLILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~-~~i~~~~   98 (287)
                      +++.++..+.+|++  +.|.||||+|||||+++|++...+.  .|.+++ + .          .+.+++++. .+....+
T Consensus       339 ~l~~isl~i~~Ge~--~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~-~----------~i~~v~q~~~~~~~~~t  404 (556)
T PRK11819        339 LIDDLSFSLPPGGI--VGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T-V----------KLAYVDQSRDALDPNKT  404 (556)
T ss_pred             eecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c-e----------EEEEEeCchhhcCCCCC
Confidence            45566666688999  9999999999999999999987654  444542 1 0          244555543 2222222


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      ..+++.....       .......+  ......++..++  .+ ...+.+.++|+|+.+|     |+...+.++++|||+
T Consensus       405 v~e~l~~~~~-------~~~~~~~~--~~~~~~l~~~~l--~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt  473 (556)
T PRK11819        405 VWEEISGGLD-------IIKVGNRE--IPSRAYVGRFNF--KGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT  473 (556)
T ss_pred             HHHHHHhhcc-------cccccccH--HHHHHHHHhCCC--ChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            2233222111       11111111  123356677776  43 3466788999999998     666678999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|......+.+.+.++... |+++|+...+..++++++.+
T Consensus       474 ~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l  515 (556)
T PRK11819        474 NDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAF  515 (556)
T ss_pred             CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEE
Confidence            999999888888877776322 77999999999999987654

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.38  E-value=5.1e-14  Score=143.06  Aligned_cols=179  Identities=15%  Similarity=0.091  Sum_probs=121.3

Q ss_pred             HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----CC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----GP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .+++|+.  ++|.||||+|||||+++|++...    +.  .|.+++.+. . +.....++.+.+++|+..++...++.++
T Consensus        83 ~i~~Ge~--~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~-~-~~~~~~r~~i~yv~Q~d~~~~~lTV~E~  158 (1394)
T TIGR00956        83 LIKPGEL--TVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITP-E-EIKKHYRGDVVYNAETDVHFPHLTVGET  158 (1394)
T ss_pred             EEECCEE--EEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEeh-H-HHHhhcCceeEEeccccccCCCCCHHHH
Confidence            3366777  99999999999999999999752    11  678887652 1 1112233346667776656666667777


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHH-HHHHHHHhCCCCCHHHH-----HHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSV-LTNICKKEGLTIPPEFA-----LRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~-----~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      +..+.+-|.........+.++..+. .+.+++..|+  ++...     +.+..+|||+.||     ++...+.++++|||
T Consensus       159 l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL--~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEP  236 (1394)
T TIGR00956       159 LDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGL--SHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNA  236 (1394)
T ss_pred             HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCc--ccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCC
Confidence            6665443321101112344444333 4557777777  33222     2345799999999     67777899999999


Q ss_pred             cccccCccCccHHHHHHHHHHH-----HHhccCh-hHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL-----IISEQSP-KKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~-~~~~~~~~~~~~l  213 (287)
                      ++++|......+.+.++++.+.     ++++|++ ..+....|+++.+
T Consensus       237 TsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L  284 (1394)
T TIGR00956       237 TRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVL  284 (1394)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEE
Confidence            9999999999999999998764     6678885 6788888877633

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.38  E-value=3.2e-15  Score=139.66  Aligned_cols=176  Identities=13%  Similarity=0.032  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+.+|+.  ++|+||||+|||||+++|++...+.  .|.++..            ..+.+++|+..++...+
T Consensus        19 ~il~~is~~i~~Ge~--~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------~~i~~v~Q~~~~~~~~t   84 (552)
T TIGR03719        19 EILKDISLSFFPGAK--IGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG------------IKVGYLPQEPQLDPTKT   84 (552)
T ss_pred             eeecCceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC------------CEEEEEeccCCCCCCCc
Confidence            355667777789999  9999999999999999999987654  4555421            12455555543333333


Q ss_pred             CCCCCcHHHhc------cccee--ecCCCCHH---------------------HHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2281          99 SMSQVIPAIRS------RCLCI--RIPAPTHE---------------------EIVSVLTNICKKEGLTIPPEFALRLAQ  149 (287)
Q Consensus        99 ~~~~l~~~l~s------r~~~~--~~~~~~~~---------------------~~~~~l~~~~~~~~~~~~~~~~~~l~~  149 (287)
                      ..+++..++..      ++..+  .+.....+                     +....+...++..|+.  . ....+.+
T Consensus        85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~-~~~~~~~  161 (552)
T TIGR03719        85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--P-WDADVTK  161 (552)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--c-ccCchhh
Confidence            44444332210      00000  00011110                     1123344555555662  2 3456788


Q ss_pred             HcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         150 QSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       150 ~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|+|+.+|     ++...|.++++|||++.+|......+.+.+.++... |+++|+.+.+..++++++.+
T Consensus       162 LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l  231 (552)
T TIGR03719       162 LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILEL  231 (552)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEE
Confidence            99999888     666678999999999999999888777776665323 77999999999999987755

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.38  E-value=2.4e-13  Score=104.27  Aligned_cols=196  Identities=15%  Similarity=0.078  Sum_probs=125.4

Q ss_pred             CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC-------CCHHHHHHHH
Q psy2281          11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH-------LTREAQQALR   81 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~-------l~~~~~~~l~   81 (287)
                      ..+..++|.......++..+..|+.  +.|+|.+|+|||||++|++..+.++  .+..+.-+.       +++.....|.
T Consensus        10 ~~lsk~Yg~~~gc~~vsF~l~PGeV--LgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~   87 (258)
T COG4107          10 SGLSKLYGPGKGCRDVSFDLYPGEV--LGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLL   87 (258)
T ss_pred             hhhhhhhCCCcCccccceeecCCcE--EEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHh
Confidence            3455666666667777888889999  9999999999999999999998876  444443221       2222222232


Q ss_pred             H-HHHhccCCcE--EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-
Q psy2281          82 R-TMEKYITTCR--LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-  157 (287)
Q Consensus        82 ~-~i~~~~~~~~--~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-  157 (287)
                      + --+.+.|++.  +=+..+...|+-+.+..      ...-....++......+++..+.. +.........|||..+| 
T Consensus        88 RTeWG~VhQnP~DGLRm~VSAG~NiGERlma------~G~RHYG~iR~~a~~WL~~VEI~~-~RiDD~PrtFSGGMqQRL  160 (258)
T COG4107          88 RTEWGFVHQNPRDGLRMQVSAGGNIGERLMA------IGARHYGNIRAEAQDWLEEVEIDL-DRIDDLPRTFSGGMQQRL  160 (258)
T ss_pred             hhccceeecCccccceeeeccCCccchhHHh------hhhhhhhhHHHHHHHHHHhcccCc-ccccCcccccchHHHHHH
Confidence            2 2344455542  33333344444433221      111112244455555555555532 22344566788886666 


Q ss_pred             ----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHh
Q psy2281         158 ----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLV  215 (287)
Q Consensus       158 ----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~  215 (287)
                          -+..-|++.++|||+.++|......+.+.++.++.+     ++++|+...+.-+.+++..+..
T Consensus       161 QiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~  227 (258)
T COG4107         161 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ  227 (258)
T ss_pred             HHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecC
Confidence                344557889999999999999888888999988866     7799999888888888765533

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.38  E-value=7.5e-12  Score=120.60  Aligned_cols=146  Identities=20%  Similarity=0.261  Sum_probs=100.3

Q ss_pred             CCCCCccCcHHHHHHHHHHHh-----------cC-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLLK-----------EG-DFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~-----------~g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      .+++++.|.+.+++.+...+.           -| ..|. ++|+||||||||+++++++++...+               
T Consensus       450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vG  529 (733)
T TIGR01243       450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVG  529 (733)
T ss_pred             cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccC
Confidence            367888888888888877662           12 2233 8999999999999999999887543               


Q ss_pred             -------------------EEEEeCCCCCCH------------HHHHHHHHHHHhcc--CCcEEEEEeCCCCCCcHHHhc
Q psy2281          63 -------------------VIILNETDHLTR------------EAQQALRRTMEKYI--TTCRLILCANSMSQVIPAIRS  109 (287)
Q Consensus        63 -------------------~i~ide~d~l~~------------~~~~~l~~~i~~~~--~~~~~i~~~~~~~~l~~~l~s  109 (287)
                                         ++++||+|.+..            ...+.|+..++...  .+..++.++|.++.+.+++++
T Consensus       530 ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allR  609 (733)
T TIGR01243       530 ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLR  609 (733)
T ss_pred             cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcC
Confidence                               999999987632            12344555565432  234455666677889999875


Q ss_pred             --ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHH
Q psy2281         110 --RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRR  157 (287)
Q Consensus       110 --r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~  157 (287)
                        ||. .+.++.|+.++..++++...++..+. ++..+..+++.+    |.|+..
T Consensus       610 pgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~  663 (733)
T TIGR01243       610 PGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEA  663 (733)
T ss_pred             CCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHH
Confidence              884 68899999999999988766554442 222355566544    445544

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.37  E-value=2.3e-14  Score=146.93  Aligned_cols=175  Identities=17%  Similarity=0.113  Sum_probs=126.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.|+|++|+||||++++|.+...+.  .|.||+.|. ..-....+|+.+..++|++.++ ..|.
T Consensus      1301 vL~~is~~I~~Gek--iaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI-~~i~~~~LR~~i~iVpQdp~LF-~gTI 1376 (1522)
T TIGR00957      1301 VLRHINVTIHGGEK--VGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI-AKIGLHDLRFKITIIPQDPVLF-SGSL 1376 (1522)
T ss_pred             cccceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEc-cccCHHHHHhcCeEECCCCccc-CccH
Confidence            56666667789999  9999999999999999999988765  899999884 3333567899999999998554 4577


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHH-----HHH--hCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI-----CKK--EGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~--~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      .+|+.+          +...+++++.+.++..     ...  .|+  +....+.=..+|+|+.|+     |+...+++++
T Consensus      1377 r~NLdp----------~~~~sdeei~~al~~a~l~~~I~~lp~GL--dt~v~e~G~~LSgGQrQrl~LARALLr~~~ILi 1444 (1522)
T TIGR00957      1377 RMNLDP----------FSQYSDEEVWWALELAHLKTFVSALPDKL--DHECAEGGENLSVGQRQLVCLARALLRKTKILV 1444 (1522)
T ss_pred             HHHcCc----------ccCCCHHHHHHHHHHcCcHHHHhhCccCC--CceecCCCCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence            788865          4456777776655542     111  111  111111123478887777     6777788999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +||||+++|..+...+.+.+++..+.   |+++|....+.. +|+++.+
T Consensus      1445 LDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVl 1492 (1522)
T TIGR00957      1445 LDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVL 1492 (1522)
T ss_pred             EECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEE
Confidence            99999999988877777777665443   778999888776 4777644

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.37  E-value=2.4e-15  Score=118.70  Aligned_cols=137  Identities=20%  Similarity=0.128  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+.+|+.  +++.||||+|||||++++++...+.  .|.+++.            +.+.+++++..+ +..+.
T Consensus        16 ~l~~i~l~i~~Ge~--~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~-~~~tv   80 (166)
T cd03223          16 LLKDLSFEIKPGDR--LLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYL-PLGTL   80 (166)
T ss_pred             eeecCeEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCcc-ccccH
Confidence            44555566688998  9999999999999999999987654  5555541            123333333211 00111


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++.           +.                            ...++|+|+.||     |+...+.++++|||+++
T Consensus        81 ~~nl~-----------~~----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~  121 (166)
T cd03223          81 REQLI-----------YP----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSA  121 (166)
T ss_pred             HHHhh-----------cc----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccc
Confidence            11110           00                            134567776666     77778899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++... ++++|+... ...+|+++.+
T Consensus       122 LD~~~~~~l~~~l~~~~~tiiivsh~~~~-~~~~d~i~~l  160 (166)
T cd03223         122 LDEESEDRLYQLLKELGITVISVGHRPSL-WKFHDRVLDL  160 (166)
T ss_pred             cCHHHHHHHHHHHHHhCCEEEEEeCChhH-HhhCCEEEEE
Confidence            9998888777777765322 678898764 3466665443

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.37  E-value=6.1e-12  Score=122.33  Aligned_cols=150  Identities=13%  Similarity=0.209  Sum_probs=113.3

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------C-----------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------P-----------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------~-----------   62 (287)
                      .+++.||..++.++|+++.+..+-.++.....++++|+||||+|||++++.++..+..          .           
T Consensus       168 l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a  247 (857)
T PRK10865        168 LTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA  247 (857)
T ss_pred             HHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh
Confidence            3567899999999999988888888776777777999999999999999999987631          0           


Q ss_pred             --------------------------EEEEeCCCCCCHH--------HHHHHHHHHHhccCCcEEEEEeCCCC-----CC
Q psy2281          63 --------------------------VIILNETDHLTRE--------AQQALRRTMEKYITTCRLILCANSMS-----QV  103 (287)
Q Consensus        63 --------------------------~i~ide~d~l~~~--------~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l  103 (287)
                                                +++|||+|.+...        .++.|...++.  ....+|.++|..+     +.
T Consensus       248 g~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~IgaTt~~e~r~~~~~  325 (857)
T PRK10865        248 GAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEK  325 (857)
T ss_pred             ccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeEEEcCCCHHHHHHhhh
Confidence                                      8999999987532        34445444442  2344555555544     37


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHHHHHcCCcH
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE----GLTIPPEFALRLAQQSDRNL  155 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~l~~~s~G~~  155 (287)
                      .+++.+||+.+.+..|+.++...+++.+..+.    ++.+++++....+.+|.+-+
T Consensus       326 d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~  381 (857)
T PRK10865        326 DAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI  381 (857)
T ss_pred             cHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence            88999999888899999999998887766543    56678888888777776544

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.37  E-value=2.5e-11  Score=117.75  Aligned_cols=152  Identities=18%  Similarity=0.307  Sum_probs=115.7

Q ss_pred             CCccCcHHHHHHHHHHHhc---C----CCCc--EEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281          14 QKLDFHCKQANHLRNLLKE---G----DFPH--LLFYGPSGAGKKTRIMALLKELYGP----------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~---g----~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------   62 (287)
                      +.++||..++..+...+..   |    ..|.  ++|+||+|+|||.++++++..+++.                      
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~  645 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLK  645 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcccc
Confidence            3578899888877777621   1    2232  7999999999999999999888532                      


Q ss_pred             -------------------------EEEEeCCCCCCHHHHHHHHHHHHhcc-----------CCcEEEEEeCCCC-----
Q psy2281          63 -------------------------VIILNETDHLTREAQQALRRTMEKYI-----------TTCRLILCANSMS-----  101 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~-----------~~~~~i~~~~~~~-----  101 (287)
                                               +|++||++..+++.++.|++.++.-.           .++.+|+++|...     
T Consensus       646 g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~  725 (852)
T TIGR03345       646 GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMA  725 (852)
T ss_pred             CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHH
Confidence                                     89999999999999999998887542           5677777766411     


Q ss_pred             ------------------------CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh--------C--CCCCHHHHHHH
Q psy2281         102 ------------------------QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE--------G--LTIPPEFALRL  147 (287)
Q Consensus       102 ------------------------~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~--------~--~~~~~~~~~~l  147 (287)
                                              .+.+++.+|+.++.|.+++.+++.+++...+...        |  +.+++.+.+++
T Consensus       726 ~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~L  805 (852)
T TIGR03345       726 LCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHI  805 (852)
T ss_pred             hccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHH
Confidence                                    1456788999999999999999998887765431        4  35789999999


Q ss_pred             HHHcCC---cHHHHHHHHHHH
Q psy2281         148 AQQSDR---NLRRAILMCEAS  165 (287)
Q Consensus       148 ~~~s~G---~~r~al~~l~~~  165 (287)
                      ++.+.+   +.|.....++..
T Consensus       806 a~~g~~~~~GAR~L~r~Ie~~  826 (852)
T TIGR03345       806 VARCTEVESGARNIDAILNQT  826 (852)
T ss_pred             HHHcCCCCCChHHHHHHHHHH
Confidence            988766   566666665543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.37  E-value=4.8e-15  Score=140.47  Aligned_cols=168  Identities=12%  Similarity=0.074  Sum_probs=107.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      +++.++..+..|+.  ++|.||||+|||||+++|++.+.+.  .|.++. + +          .+.+++++.. +....+
T Consensus       334 il~~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~-~----------~i~y~~q~~~~l~~~~t  399 (635)
T PRK11147        334 LVKDFSAQVQRGDK--IALIGPNGCGKTTLLKLMLGQLQADSGRIHCGT-K-L----------EVAYFDQHRAELDPEKT  399 (635)
T ss_pred             EEcCcEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC-C-c----------EEEEEeCcccccCCCCC
Confidence            44555556688888  9999999999999999999987654  444432 1 0          1334443321 111112


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      ..+++.....      .+ ..+  .....+..++...++. .+.....+..+|+|+.+|     ++..-+.++++|||++
T Consensus       400 v~e~l~~~~~------~~-~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~  469 (635)
T PRK11147        400 VMDNLAEGKQ------EV-MVN--GRPRHVLGYLQDFLFH-PKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN  469 (635)
T ss_pred             HHHHHHhhcc------cc-ccc--chHHHHHHHHHhcCCC-HHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence            2222211100      00 011  1123455666666762 234567788999999988     5556678999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|......+.+.+.++... |+++|+...+..++++++.+
T Consensus       470 ~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l  510 (635)
T PRK11147        470 DLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIF  510 (635)
T ss_pred             CCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEE
Confidence            99988877666666554222 77999999999999887755

>KOG1968|consensus

Probab=99.36  E-value=3.6e-12  Score=121.92  Aligned_cols=166  Identities=24%  Similarity=0.381  Sum_probs=131.8

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcC--------------CCCc--EEEeCCCCCcHHHHHHHHHHHhCCC--
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG--------------DFPH--LLFYGPSGAGKKTRIMALLKELYGP--   62 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g--------------~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~--   62 (287)
                      |+.|.++|+|++..++.++......+..++..-              ....  ++++||+|.||||.+.+.++.+...  
T Consensus       307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~  386 (871)
T KOG1968|consen  307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV  386 (871)
T ss_pred             ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence            458999999999999999887666666666321              1111  4899999999999999999988644  


Q ss_pred             --------------------------------------------EEEEeCCCCCCHHHHH---HHHHHHHhccCCcEEEE
Q psy2281          63 --------------------------------------------VIILNETDHLTREAQQ---ALRRTMEKYITTCRLIL   95 (287)
Q Consensus        63 --------------------------------------------~i~ide~d~l~~~~~~---~l~~~i~~~~~~~~~i~   95 (287)
                                                                  +|++||+|.+..+...   .+-..+.  .....+++
T Consensus       387 E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~--ks~~Piv~  464 (871)
T KOG1968|consen  387 EKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCK--KSSRPLVC  464 (871)
T ss_pred             ecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHH--hccCCeEE
Confidence                                                        8999999998774333   3333333  23456888


Q ss_pred             EeCCCCCCcH-HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281          96 CANSMSQVIP-AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus        96 ~~~~~~~l~~-~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      +||....... ++.+-|.-++|..|+...+..++..++..+++.+++..++.+.++++||+|+.++.++.+.+.
T Consensus       465 ~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~~  538 (871)
T KOG1968|consen  465 TCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSLS  538 (871)
T ss_pred             EecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhcc
Confidence            8888765333 555567778999999999999999999999999999999999999999999999999988665

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=3.1e-14  Score=110.45  Aligned_cols=167  Identities=16%  Similarity=0.106  Sum_probs=100.7

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      .......+...+..|+.  +.+.||||+|||||+|++++.+.++  -|.+++...-..  .+...+.+-+.....-+=..
T Consensus        14 e~~lf~~L~f~l~~Ge~--~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~--~~~~~~~l~yLGH~~giK~e   89 (209)
T COG4133          14 ERTLFSDLSFTLNAGEA--LQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV--RESYHQALLYLGHQPGIKTE   89 (209)
T ss_pred             cceeecceeEEEcCCCE--EEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc--hhhHHHHHHHhhccccccch
Confidence            33445566677788999  9999999999999999999999877  677775442111  11122333333333333333


Q ss_pred             eCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-HHHHH----HHHhhcCC
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-AILMC----EASKVQQY  170 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-al~~l----~~~~~~de  170 (287)
                      .|..+|+.+--.       |... +...    +...++..|+  ..-....+.++|.|+.|| |+.-+    ..+.++||
T Consensus        90 LTa~ENL~F~~~-------~~~~~~~~~----i~~Al~~vgL--~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDE  156 (209)
T COG4133          90 LTALENLHFWQR-------FHGSGNAAT----IWEALAQVGL--AGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDE  156 (209)
T ss_pred             hhHHHHHHHHHH-------HhCCCchhh----HHHHHHHcCc--ccccccchhhcchhHHHHHHHHHHHcCCCCceeecC
Confidence            455566543211       3232 2322    3344555666  444555677899998888 44433    45667899


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKK  202 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~  202 (287)
                      |++.+|......+...+..=+..    ++.+|.+-.
T Consensus       157 P~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~  192 (209)
T COG4133         157 PFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP  192 (209)
T ss_pred             cccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence            99999977765544444333322    556666543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.36  E-value=1e-11  Score=107.03  Aligned_cols=114  Identities=21%  Similarity=0.297  Sum_probs=85.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC---------------------------------------EEEEeCCCCCCHH---
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP---------------------------------------VIILNETDHLTRE---   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------------------~i~ide~d~l~~~---   75 (287)
                      ++|+||||||||.+++++++++...                                       +|+|||+|.+.+.   
T Consensus       151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~  230 (413)
T PLN00020        151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGT  230 (413)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCC
Confidence            8999999999999999999998654                                       8999999975421   


Q ss_pred             ------HH---HHHHHHHHhc--------------cCCcEEEEEeCCCCCCcHHHhc--ccceeecCCCCHHHHHHHHHH
Q psy2281          76 ------AQ---QALRRTMEKY--------------ITTCRLILCANSMSQVIPAIRS--RCLCIRIPAPTHEEIVSVLTN  130 (287)
Q Consensus        76 ------~~---~~l~~~i~~~--------------~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~~~~~~~~~~l~~  130 (287)
                            .+   ..|...++.+              .....+|.++|.++.|.+++++  |+..+ +..|+.++..++++.
T Consensus       231 ~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~  309 (413)
T PLN00020        231 TQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHG  309 (413)
T ss_pred             CCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHH
Confidence                  11   2344444321              2234567777888899999998  77543 347899999999999


Q ss_pred             HHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281         131 ICKKEGLTIPPEFALRLAQQSDRN  154 (287)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~~~s~G~  154 (287)
                      +++..++  +......+++...|+
T Consensus       310 ~~r~~~l--~~~dv~~Lv~~f~gq  331 (413)
T PLN00020        310 IFRDDGV--SREDVVKLVDTFPGQ  331 (413)
T ss_pred             HhccCCC--CHHHHHHHHHcCCCC
Confidence            9988877  667777787777765

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.35  E-value=4.3e-14  Score=143.85  Aligned_cols=175  Identities=13%  Similarity=0.034  Sum_probs=126.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------------------------------------
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------------------------------------   61 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------------------------------------   61 (287)
                      +++.++..+++|+.  +.|+||+||||||+++.|.+...+                                        
T Consensus      1183 vL~~lsl~i~~G~~--vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265       1183 IYKDLTFSCDSKKT--TAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred             cccCeeEEEcCCCE--EEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            56666667789999  999999999999999999999876                                        


Q ss_pred             --------------C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHH
Q psy2281          62 --------------P--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIV  125 (287)
Q Consensus        62 --------------~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~  125 (287)
                                    .  .|.+|+.|. ..-....+++.+.+++|++.+ +..|..+||..+         -+..+++++.
T Consensus      1261 ~~~~~~~~~~~~~~~~G~I~idG~di-~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g---------~~~at~eeI~ 1329 (1466)
T PTZ00265       1261 TKEGGSGEDSTVFKNSGKILLDGVDI-CDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFG---------KEDATREDVK 1329 (1466)
T ss_pred             ccccccccccccCCCCCeEEECCEEH-HhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcC---------CCCCCHHHHH
Confidence                          1  689999873 222356789999999998754 566777777543         1234666655


Q ss_pred             HHHHHHHHHhCC-----CC----CHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHH
Q psy2281         126 SVLTNICKKEGL-----TI----PPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTA  191 (287)
Q Consensus       126 ~~l~~~~~~~~~-----~~----~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~  191 (287)
                      +.++.    .++     .+    +..+-+.=..+|||+.||     |+...|+++++||||+++|..+...+.+.+.++.
T Consensus      1330 ~A~k~----A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~ 1405 (1466)
T PTZ00265       1330 RACKF----AAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIK 1405 (1466)
T ss_pred             HHHHH----cCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence            54443    222     01    111112223488888877     7888899999999999999999888888888874


Q ss_pred             H--H---HHhccChhHHHHHHHHHHHHH
Q psy2281         192 K--L---IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       192 ~--~---i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      .  .   |+++|....+.. +|+++.+-
T Consensus      1406 ~~~~~TvIiIaHRlsti~~-aD~Ivvl~ 1432 (1466)
T PTZ00265       1406 DKADKTIITIAHRIASIKR-SDKIVVFN 1432 (1466)
T ss_pred             ccCCCEEEEEechHHHHHh-CCEEEEEe
Confidence            1  2   789999877665 67776553

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.35  E-value=1e-11  Score=119.25  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=97.7

Q ss_pred             ccCcHHHHHHHHHHHh------cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------
Q psy2281          16 LDFHCKQANHLRNLLK------EGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------------------   62 (287)
Q Consensus        16 ~~~~~~~~~~l~~~~~------~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------   62 (287)
                      .+|...+++.+..++.      +...+.++|+||||+||||+++.+++.+..+                           
T Consensus       324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~  403 (784)
T PRK10787        324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMP  403 (784)
T ss_pred             ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCC
Confidence            6777888887765552      1223339999999999999999999876433                           


Q ss_pred             ---------------EEEEeCCCCCCHHH----HHHHHHHHHhc---------------cCCcEEEEEeCCCCCCcHHHh
Q psy2281          63 ---------------VIILNETDHLTREA----QQALRRTMEKY---------------ITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        63 ---------------~i~ide~d~l~~~~----~~~l~~~i~~~---------------~~~~~~i~~~~~~~~l~~~l~  108 (287)
                                     ++++||+|.++...    +.+|+..++.-               ..+..|+.++|. -.+.++++
T Consensus       404 G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~-~~i~~aLl  482 (784)
T PRK10787        404 GKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS-MNIPAPLL  482 (784)
T ss_pred             cHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC-CCCCHHHh
Confidence                           79999999987653    46777777620               123334444443 46999999


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHH-----Hh-----CCCCCHHHHHHHHH
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICK-----KE-----GLTIPPEFALRLAQ  149 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~l~~  149 (287)
                      +||.++.|.+++.++..+++++.+.     +.     .+.+++++...+++
T Consensus       483 ~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~  533 (784)
T PRK10787        483 DRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR  533 (784)
T ss_pred             cceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence            9999999999999999988877663     11     24568888888876

>KOG1942|consensus

Probab=99.35  E-value=7.6e-11  Score=97.72  Aligned_cols=105  Identities=25%  Similarity=0.306  Sum_probs=86.5

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC-------------CCCcHHHhcccceeecCCCCHHHHHHHHH
Q psy2281          63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM-------------SQVIPAIRSRCLCIRIPAPTHEEIVSVLT  129 (287)
Q Consensus        63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~-------------~~l~~~l~sr~~~~~~~~~~~~~~~~~l~  129 (287)
                      ++||||++.+.-+....|.+.++.+- .+.++|.+|..             ..+.+.+..|..+++-.++++++++++++
T Consensus       299 VLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~  377 (456)
T KOG1942|consen  299 VLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIK  377 (456)
T ss_pred             ceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHH
Confidence            99999999999999999999998754 34456655431             23788899999999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhhc
Q psy2281         130 NICKKEGLTIPPEFALRLAQQSD-RNLRRAILMCEASKVQ  168 (287)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~s~-G~~r~al~~l~~~~~~  168 (287)
                      ..++.+|+.++++++..+++.+. ..+|.++.+++...++
T Consensus       378 ~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~  417 (456)
T KOG1942|consen  378 IRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASIL  417 (456)
T ss_pred             HHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHH
Confidence            99999999999999999998754 4788888888755444

>KOG0742|consensus

Probab=99.35  E-value=3.1e-11  Score=104.17  Aligned_cols=126  Identities=22%  Similarity=0.340  Sum_probs=95.7

Q ss_pred             CCC-CCCccCcHHHHHHHHHHH--------hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281          10 PNN-LQKLDFHCKQANHLRNLL--------KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus        10 p~~-~~~~~~~~~~~~~l~~~~--------~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      ++. |++++.++.....+..+.        .++-+.+++||||||+|||..++-|+....-+                  
T Consensus       350 gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVT  429 (630)
T KOG0742|consen  350 GKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVT  429 (630)
T ss_pred             CCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHH
Confidence            444 888888888777777665        22334469999999999999999999876533                  


Q ss_pred             ----------------EEEEeCCCCC---------CHHH---HHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhccc-ce
Q psy2281          63 ----------------VIILNETDHL---------TREA---QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC-LC  113 (287)
Q Consensus        63 ----------------~i~ide~d~l---------~~~~---~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~-~~  113 (287)
                                      ++||||+|.+         +...   .++|+-.-+.-+.+..+++.+|.+..++.++-.|+ .+
T Consensus       430 kiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~  509 (630)
T KOG0742|consen  430 KIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEV  509 (630)
T ss_pred             HHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhhe
Confidence                            9999999863         3332   33333334445566788889999999999999999 58


Q ss_pred             eecCCCCHHHHHHHHHHHHHHh
Q psy2281         114 IRIPAPTHEEIVSVLTNICKKE  135 (287)
Q Consensus       114 ~~~~~~~~~~~~~~l~~~~~~~  135 (287)
                      ++|+.|..++..+.+...+.+.
T Consensus       510 veFpLPGeEERfkll~lYlnky  531 (630)
T KOG0742|consen  510 VEFPLPGEEERFKLLNLYLNKY  531 (630)
T ss_pred             eecCCCChHHHHHHHHHHHHHH
Confidence            9999999999988888777653

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1.9e-14  Score=136.28  Aligned_cols=166  Identities=16%  Similarity=0.110  Sum_probs=110.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+.+|+.  +.|+||||+|||||+++|++...+.  .|.+++-            ..+++++|+....+  +.
T Consensus       327 il~~isl~i~~Ge~--~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~------------~~igy~~Q~~~~~l--~~  390 (638)
T PRK10636        327 ILDSIKLNLVPGSR--IGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG------------IKLGYFAQHQLEFL--RA  390 (638)
T ss_pred             eeccceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC------------EEEEEecCcchhhC--Cc
Confidence            45556666688988  9999999999999999999987654  4555420            01333333211000  01


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      ...+...+.      .+.   .......+..++...++. .+...+.+..+|||+.+|     ++..-+.++++||||++
T Consensus       391 ~~~~~~~~~------~~~---~~~~~~~~~~~L~~~~l~-~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~  460 (638)
T PRK10636        391 DESPLQHLA------RLA---PQELEQKLRDYLGGFGFQ-GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNH  460 (638)
T ss_pred             cchHHHHHH------HhC---chhhHHHHHHHHHHcCCC-hhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence            111111111      011   112234566777777772 234567889999999998     55566789999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++... |+++|+...+..++++++.+
T Consensus       461 LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l  500 (638)
T PRK10636        461 LDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLV  500 (638)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEE
Confidence            9999888888877776222 77999999999999987754

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.34  E-value=4e-14  Score=132.41  Aligned_cols=171  Identities=12%  Similarity=0.069  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.|+||+|+||||+++.+++...++  .|.+|+.+. ..-....+++.+..++|++.++ ..+.
T Consensus       357 ~l~~vs~~i~~G~~--~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i-~~~~~~~~~~~i~~v~q~~~lf-~~ti  432 (555)
T TIGR01194       357 ALGPIDLRIAQGDI--VFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAV-SADSRDDYRDLFSAIFADFHLF-DDLI  432 (555)
T ss_pred             eeccceEEEcCCcE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC-CCCCHHHHHhhCcEEccChhhh-hhhh
Confidence            45556666688998  9999999999999999999988766  788888653 2222445677788888876433 2333


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTI----PPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      .++.            .+..++++    +.+.++..++.-    -++..+....+|||+.||     |+...+.++++||
T Consensus       433 ~~n~------------~~~~~~~~----~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE  496 (555)
T TIGR01194       433 GPDE------------GEHASLDN----AQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE  496 (555)
T ss_pred             hccc------------ccchhHHH----HHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            3332            11123333    344555555520    011122236799999888     7777789999999


Q ss_pred             CcccccCccCccHHHHHH-HHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIR-DTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~-~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|+.+...+.+.+. .+...    ++++|+...+ ..+|+++.+
T Consensus       497 ~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l  543 (555)
T TIGR01194       497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKL  543 (555)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEE
Confidence            999999988877765443 34322    7788987654 356665543

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>KOG0061|consensus

Probab=99.34  E-value=5.7e-13  Score=125.03  Aligned_cols=177  Identities=20%  Similarity=0.215  Sum_probs=132.1

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILC   96 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~   96 (287)
                      +.+.++...++|++  +++.||+|+|||||++++++.....     .|.+++... .   ...+++..+++.|+..++..
T Consensus        45 iL~~vsg~~~~Gel--~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~-~---~~~~~~~s~yV~QdD~l~~~  118 (613)
T KOG0061|consen   45 ILKGVSGTAKPGEL--LAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPR-D---SRSFRKISGYVQQDDVLLPT  118 (613)
T ss_pred             eeeCcEEEEecCeE--EEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccC-c---hhhhhheeEEEccccccccc
Confidence            34444455578888  9999999999999999999988642     788887332 1   34566778888999999999


Q ss_pred             eCCCCCCcHHHhcccceeecCC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-----HHcCCcHHH-----HHHHHHHH
Q psy2281          97 ANSMSQVIPAIRSRCLCIRIPA-PTHEEIVSVLTNICKKEGLTIPPEFALRLA-----QQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus        97 ~~~~~~l~~~l~sr~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-----~~s~G~~r~-----al~~l~~~  165 (287)
                      .|+.+.+...-+-|     .+. .+.++..++++.+++..|+  ..-+...+.     ..|||+.||     -+...|.+
T Consensus       119 LTV~EtL~f~A~lr-----lp~~~~~~~k~~~V~~vi~~LgL--~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~i  191 (613)
T KOG0061|consen  119 LTVRETLRFSALLR-----LPSSLSKEEKRERVEEVISELGL--EKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSI  191 (613)
T ss_pred             ccHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHcCC--hhhccceecCCCCCccccchhhHHHHHHHHHcCCCE
Confidence            99988877765532     222 4779999999999999998  333444443     499999999     23344678


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH----HHhccCh-hHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSP-KKLLEVRTRLY  211 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~-~~~~~~~~~~~  211 (287)
                      +++||||+++|......+.+.+++++++    |.+=|.+ ..+-..-|+++
T Consensus       192 LflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~  242 (613)
T KOG0061|consen  192 LFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLL  242 (613)
T ss_pred             EEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhh
Confidence            8899999999999988888999999887    3333443 45555666665

>PTZ00243 ABC transporter; Provisional

Probab=99.34  E-value=5.1e-14  Score=144.32  Aligned_cols=173  Identities=13%  Similarity=0.079  Sum_probs=125.0

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+++|+.  +.|+|++|+||||++++|.+...+.  .|.+|+.|. ..-....+++.+..++|++.+ +..|.
T Consensus      1325 vL~~vsf~I~~Gek--VaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di-~~i~l~~LR~~I~iVpQdp~L-F~gTI 1400 (1560)
T PTZ00243       1325 VLRGVSFRIAPREK--VGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREI-GAYGLRELRRQFSMIPQDPVL-FDGTV 1400 (1560)
T ss_pred             eeecceEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEc-ccCCHHHHHhcceEECCCCcc-ccccH
Confidence            56667777789998  9999999999999999999988765  899999874 222356788999999999854 45677


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHH-HH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMC-EA  164 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l-~~  164 (287)
                      .+|+.+          +...+++++.+.++.    .++.         ++....+.=.++|+|+.|+     |+... ++
T Consensus      1401 reNIdp----------~~~~sdeeI~~Al~~----a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243       1401 RQNVDP----------FLEASSAEVWAALEL----VGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred             HHHhCc----------ccCCCHHHHHHHHHH----CCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence            788854          345667666665554    2330         1111111123589998888     44443 57


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++||+|+.+|..+...+.+.+.+..+.   |+++|....+.. +|+++.|
T Consensus      1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL 1517 (1560)
T PTZ00243       1467 FILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVM 1517 (1560)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEE
Confidence            89999999999988888887777776443   779999987765 5777644

>PRK08485 DNA polymerase III subunit delta'; Validated

Probab=99.33  E-value=3.9e-11  Score=94.82  Aligned_cols=135  Identities=21%  Similarity=0.241  Sum_probs=106.5

Q ss_pred             HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-CC---EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELY-GP---VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-~~---~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                      .......+++-++-|...|.-.. |.+..... .+   .++|++++.++..++++|++.+|+|++++.|++.++....++
T Consensus        20 l~~~~~~~~~~~f~~~~i~Vd~i-Reii~~~~~~~~~~k~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~ll   98 (206)
T PRK08485         20 LINEFGKKNLRFFIKEEFKIEDA-KEVIAEAYIAESEEKIIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLL   98 (206)
T ss_pred             HHHhcCCCceEEECCCCCCHHHH-HHHHHHHhhCCCCcEEEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence            33333444466666655555544 44444332 12   566889999999999999999999999999999999999999


Q ss_pred             HHHhcccce-------------eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy2281         105 PAIRSRCLC-------------IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS  165 (287)
Q Consensus       105 ~~l~sr~~~-------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~  165 (287)
                      ++++|||+.             +.+++++.+++.+.+.. ++++++...+++.+.++.++.|.+|.++...++.
T Consensus        99 pTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~  171 (206)
T PRK08485         99 PTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEE  171 (206)
T ss_pred             hHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHH
Confidence            999999985             67889999999999998 7888887788889999999999998887665543

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.1e-15  Score=144.48  Aligned_cols=190  Identities=14%  Similarity=0.081  Sum_probs=112.8

Q ss_pred             cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC---CHHHHHHHHHHHHhccCCc
Q psy2281          17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL---TREAQQALRRTMEKYITTC   91 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l---~~~~~~~l~~~i~~~~~~~   91 (287)
                      +|...+++.++..+.+|+.  ++|+||||||||||+++|++...++  .|.+++...+   ...........++++.+..
T Consensus        11 ~g~~~~l~~vs~~i~~Ge~--v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~   88 (638)
T PRK10636         11 RGVRVLLDNATATINPGQK--VGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVIDGD   88 (638)
T ss_pred             eCCceeecCcEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHHhh
Confidence            3444456667777789999  9999999999999999999987655  5555542110   0000000000111111100


Q ss_pred             EEEEEe-------CCCCC--CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----
Q psy2281          92 RLILCA-------NSMSQ--VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----  157 (287)
Q Consensus        92 ~~i~~~-------~~~~~--l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----  157 (287)
                      ..+...       .....  ....+..+     +...+..+....+..+++..|+. .+...+.+..+|+|+.+|     
T Consensus        89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~L~~lgl~-~~~~~~~~~~LSgGerqRv~LA~  162 (638)
T PRK10636         89 REYRQLEAQLHDANERNDGHAIATIHGK-----LDAIDAWTIRSRAASLLHGLGFS-NEQLERPVSDFSGGWRMRLNLAQ  162 (638)
T ss_pred             HHHHHHHHHHHHHhccCCHHHHHHHHHH-----HHhcCCcchHHHHHHHHHhCCCC-chhhcCchhhcCHHHHHHHHHHH
Confidence            000000       00000  00001100     11111123445667778877873 134566788999999888     


Q ss_pred             HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHHH
Q psy2281         158 AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYELL  214 (287)
Q Consensus       158 al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l~  214 (287)
                      ++...|.++++|||++.+|......+.+.+.++... |+++|+...+..++++++.+-
T Consensus       163 aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~  220 (638)
T PRK10636        163 ALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIE  220 (638)
T ss_pred             HHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEe
Confidence            666678999999999999988877666666554222 779999999999999887553

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.33  E-value=1.4e-13  Score=121.43  Aligned_cols=178  Identities=16%  Similarity=0.089  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++.++..+..|+.  +.++||||+|||||+|.+.+.-.+.  .|.+|++|.-. =.++.|-+.++|.+|+..++. .|
T Consensus       350 pil~~isF~l~~G~~--lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~q-Wd~e~lG~hiGYLPQdVeLF~-GT  425 (580)
T COG4618         350 PILKGISFALQAGEA--LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQ-WDREQLGRHIGYLPQDVELFD-GT  425 (580)
T ss_pred             cceecceeEecCCce--EEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhc-CCHHHhccccCcCcccceecC-Cc
Confidence            456677777889999  9999999999999999999987765  89999987422 225667788999999887655 35


Q ss_pred             CCCCCcHHHhcccceeecC-CCCHHHHHHHHHHH-----HHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281          99 SMSQVIPAIRSRCLCIRIP-APTHEEIVSVLTNI-----CKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~-~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      ..+||..          |. ..+.+.+.+..+..     .-..--.++...-+.=..+|+|+.||     |+--.|.++.
T Consensus       426 IaeNIaR----------f~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvV  495 (580)
T COG4618         426 IAENIAR----------FGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVV  495 (580)
T ss_pred             HHHHHHh----------ccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEE
Confidence            6666532          55 44554444433221     10100001111111122488898887     7778899999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||-+.+|......+.+.|.++.+.    ++++|.+..+.. .|++..+
T Consensus       496 LDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~-~Dkilvl  544 (580)
T COG4618         496 LDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS-VDKILVL  544 (580)
T ss_pred             ecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhh-cceeeee
Confidence            99999999998888888888887766    778988876654 5666533

>PRK07914 hypothetical protein; Reviewed

Probab=99.33  E-value=1.9e-09  Score=94.10  Aligned_cols=251  Identities=9%  Similarity=0.053  Sum_probs=157.9

Q ss_pred             HHHHHHHHHhc--C--CCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281          22 QANHLRNLLKE--G--DFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLIL   95 (287)
Q Consensus        22 ~~~~l~~~~~~--g--~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~   95 (287)
                      ..+.+...+..  +  ++....+.|..-.. ..+..+..--++++  +|++++.........+.+..+++.+++.+.+++
T Consensus        21 ~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-~~i~~~~t~plF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil   99 (320)
T PRK07914         21 AVAAVLRSARQRAGTADVPVSRMRAGDVST-YELAELLSPSLFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVV   99 (320)
T ss_pred             HHHHHHHHHhcCcCCCCCceEEeccccCCH-HHHHHhcCCCCCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEE
Confidence            34555554432  3  22226677754333 33433322222333  888998765555556778888998888788877


Q ss_pred             EeCCCC---CCcHHHhccc-ceeecCCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc-C
Q psy2281          96 CANSMS---QVIPAIRSRC-LCIRIPAP-THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ-Q  169 (287)
Q Consensus        96 ~~~~~~---~l~~~l~sr~-~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~-d  169 (287)
                      +.+...   ++...++... .++.+.++ +..++..|+...++..|+++++++.+.+++..|||+..+-+.+++++.+ +
T Consensus       100 ~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~  179 (320)
T PRK07914        100 VHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTG  179 (320)
T ss_pred             EecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCC
Confidence            654332   2334566554 47888888 9999999999999999999999999999999999999999999998764 3


Q ss_pred             CCccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHH------------------H---HHHHh-cCCCHHHHHH
Q psy2281         170 YPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTR------------------L---YELLV-HSIPVNVLFK  225 (287)
Q Consensus       170 ep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~------------------~---~~l~~-~~~~~~~i~~  225 (287)
                      ++++..+  ..........++++.+.+.... ...+..+.++                  +   +.+.. .| ++..+.+
T Consensus       180 ~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~-~~~A~~~l~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~-~~~~i~~  257 (320)
T PRK07914        180 GAVDAAAVRRYHSGKAEVKGFDIADKAVAGD-VAGAAEALRWAMMRGEPHVVLADALAEAVHTIARVGPLSG-DPYRLAG  257 (320)
T ss_pred             CCcCHHHHHHHcCCCeechHHHHHHHHHCCC-HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcC-CHHHHHH
Confidence            4444433  1122223334555555543331 1111111111                  1   11111 22 4555544


Q ss_pred             H--HHHHHH-------HhCChHHHHHHHHHHHHHhhHHhcC-CChHHHHHHHHHHHHHHH
Q psy2281         226 Y--LLEGLL-------ANCDSDLKSKSIEMAAMFEHRIHKG-SKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       226 ~--~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~g-~~~~~~l~~~i~~~~~~~  275 (287)
                      .  ++++..       +.++.....+++..+.+.|..++.| .++.+.||.++.+++...
T Consensus       258 ~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i~~~~~~~  317 (320)
T PRK07914        258 ELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAVRRVAELV  317 (320)
T ss_pred             HcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHh
Confidence            2  122222       2577788899999999999999976 566778999999987743

>KOG0734|consensus

Probab=99.33  E-value=1.8e-11  Score=108.71  Aligned_cols=152  Identities=18%  Similarity=0.258  Sum_probs=104.6

Q ss_pred             CCCCCccCcHHHHHHHHHHH-----------hcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLL-----------KEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~-----------~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      .+|+++.|-++++..|..++           -.|+.|. ++|+||||+|||.|+|+++++...+                
T Consensus       301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGv  380 (752)
T KOG0734|consen  301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGV  380 (752)
T ss_pred             cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcc
Confidence            46899999888888888777           2477777 9999999999999999999987654                


Q ss_pred             ------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhccCCc-EEEEE-eCCCCCCcHHHhc--
Q psy2281          63 ------------------VIILNETDHLTRE-----------AQQALRRTMEKYITTC-RLILC-ANSMSQVIPAIRS--  109 (287)
Q Consensus        63 ------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~~~~-~~i~~-~~~~~~l~~~l~s--  109 (287)
                                        +|||||+|.+...           ..+.|+--|+-..+|- .+++. +|-++.+++++.+  
T Consensus       381 GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPG  460 (752)
T KOG0734|consen  381 GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPG  460 (752)
T ss_pred             cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCC
Confidence                              9999999986421           2234444455555554 33443 4445678887765  


Q ss_pred             cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHH----HcCCcHHHHHHHHHH
Q psy2281         110 RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQ----QSDRNLRRAILMCEA  164 (287)
Q Consensus       110 r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~----~s~G~~r~al~~l~~  164 (287)
                      || ..+..+.|+-.-..++++..+.+.-+  ++++ ...|++    .+|.|+...+|...-
T Consensus       461 RFD~~v~Vp~PDv~GR~eIL~~yl~ki~~--~~~VD~~iiARGT~GFsGAdLaNlVNqAAl  519 (752)
T KOG0734|consen  461 RFDRHVTVPLPDVRGRTEILKLYLSKIPL--DEDVDPKIIARGTPGFSGADLANLVNQAAL  519 (752)
T ss_pred             ccceeEecCCCCcccHHHHHHHHHhcCCc--ccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence            55 34778888888888888888776443  3332 333443    455566666555543

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=2e-11  Score=112.07  Aligned_cols=135  Identities=24%  Similarity=0.290  Sum_probs=98.4

Q ss_pred             CccCcHHHHHHHHHHH--------hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------------
Q psy2281          15 KLDFHCKQANHLRNLL--------KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~--------~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------   62 (287)
                      +-+|-+++++.+-..+        .+|.+  +||+||||+|||+|++.||+.+.-.                        
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpI--LcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIG  401 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPI--LCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIG  401 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcE--EEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccc
Confidence            3456666777666665        13333  9999999999999999999988533                        


Q ss_pred             ------------------EEEEeCCCCCCHH----HHHHHHHH-------------HHhcc--CCcEEEEEeCCCCCCcH
Q psy2281          63 ------------------VIILNETDHLTRE----AQQALRRT-------------MEKYI--TTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 ------------------~i~ide~d~l~~~----~~~~l~~~-------------i~~~~--~~~~~i~~~~~~~~l~~  105 (287)
                                        ++++||+|.++.+    ...+|+..             ++.+.  ++..|+.++|..+.++.
T Consensus       402 amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~  481 (782)
T COG0466         402 AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPA  481 (782)
T ss_pred             cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCCh
Confidence                              9999999998632    23444443             33222  23456777777888999


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHH-----HHHhCC-----CCCHHHHHHHHHHc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNI-----CKKEGL-----TIPPEFALRLAQQS  151 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~-----~~~~~~-----~~~~~~~~~l~~~s  151 (287)
                      |++.|..++++.++++++-.++.++.     ++..|+     .++++++..+.+..
T Consensus       482 PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y  537 (782)
T COG0466         482 PLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY  537 (782)
T ss_pred             HHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence            99999999999999999988887764     344444     57888888877643

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.32  E-value=1.9e-14  Score=110.85  Aligned_cols=120  Identities=18%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|+.  +++.||||+|||||++++++...+.  .|.+|+.            .       ...++       
T Consensus        17 ~~~~~~~~~Ge~--~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------------~-------~i~~~-------   68 (144)
T cd03221          17 KDISLTINPGDR--IGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------------V-------KIGYF-------   68 (144)
T ss_pred             EeeEEEECCCCE--EEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------------E-------EEEEE-------
Confidence            344445578888  9999999999999999999987654  5666651            0       00000       


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP  181 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~  181 (287)
                                    +.                     ++....+++.      +-+|+...+.++++|||++++|.....
T Consensus        69 --------------~~---------------------lS~G~~~rv~------laral~~~p~illlDEP~~~LD~~~~~  107 (144)
T cd03221          69 --------------EQ---------------------LSGGEKMRLA------LAKLLLENPNLLLLDEPTNHLDLESIE  107 (144)
T ss_pred             --------------cc---------------------CCHHHHHHHH------HHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence                          00                     1333333333      334788888999999999999988888


Q ss_pred             cHHHHHHHHHHH-HHhccChhHHHHHHHHHHH
Q psy2281         182 DWKIYIRDTAKL-IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       182 ~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~  212 (287)
                      .+.+.+.++... ++++|+.+.+...+++++.
T Consensus       108 ~l~~~l~~~~~til~~th~~~~~~~~~d~v~~  139 (144)
T cd03221         108 ALEEALKEYPGTVILVSHDRYFLDQVATKIIE  139 (144)
T ss_pred             HHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence            777777765322 6789999888877776543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.32  E-value=1.2e-13  Score=106.83  Aligned_cols=182  Identities=12%  Similarity=0.068  Sum_probs=127.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcE--EEEEe
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCR--LILCA   97 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~--~i~~~   97 (287)
                      +++.++..++.|..  +.+.|.||+|||||++.+++.+.|.  -|.+++-.....+.+ .-.+.+..++|++.  +-+-.
T Consensus        28 AV~~vSFtL~~~QT--laiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~-~R~k~IRMiFQDpnts~NPRl  104 (267)
T COG4167          28 AVKPVSFTLREGQT--LAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYS-FRSKRIRMIFQDPNTSLNPRL  104 (267)
T ss_pred             cccceEEEecCCcE--EEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchH-hhhhheeeeecCCccccChhh
Confidence            34455555577888  9999999999999999999998876  677777654443322 11233444444331  11111


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +...-+..|++      ....++.++..+.+.+-++..|+- ++-+.-++.-++.|+.+|     |+...|++++.||..
T Consensus       105 ~iGqiLd~PL~------l~T~~~~~~R~~~i~~TL~~VGL~-Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl  177 (267)
T COG4167         105 RIGQILDFPLR------LNTDLEPEQRRKQIFETLRMVGLL-PDHANYYPHMLAPGQKQRVALARALILRPKIIIADEAL  177 (267)
T ss_pred             hhhhHhcchhh------hcccCChHHHHHHHHHHHHHhccC-ccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhh
Confidence            11122444444      134567888889999999999984 666667777888888877     777888999999999


Q ss_pred             ccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .++|...+..+.++.-++.+.     +.++++...++.+.|.+..+
T Consensus       178 ~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM  223 (267)
T COG4167         178 ASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVM  223 (267)
T ss_pred             hhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEE
Confidence            999988777777888888776     66777888888888887633

>PRK06585 holA DNA polymerase III subunit delta; Reviewed

Probab=99.32  E-value=5.9e-09  Score=92.00  Aligned_cols=239  Identities=13%  Similarity=0.111  Sum_probs=152.7

Q ss_pred             CCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------------------------EEEEeCCCCCCHHHH
Q psy2281          34 DFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------------------VIILNETDHLTREAQ   77 (287)
Q Consensus        34 ~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------------------~i~ide~d~l~~~~~   77 (287)
                      ..|.++|+|+........++.+.+...+.                                    +|++.+.+   ....
T Consensus        19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~~~~~~~~~~~t~slF~~~rlViv~~~~---~~~~   95 (343)
T PRK06585         19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDADPARLEDEANAISLFGGRRLIWVRAGS---KNLA   95 (343)
T ss_pred             CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhcCHHHHHHHHhCCCCCCCceEEEEECCc---hhHH
Confidence            44448888888887777777776554211                                    66666433   2334


Q ss_pred             HHHHHHHHhccCCcEEEEEeCCCCC---CcHHHh--cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Q psy2281          78 QALRRTMEKYITTCRLILCANSMSQ---VIPAIR--SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSD  152 (287)
Q Consensus        78 ~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~--sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~  152 (287)
                      +.|..++..+++++.+++.+...+.   +...+.  .....+.+.+++..++..|+.+.++..|+.+++++.+.+++.++
T Consensus        96 ~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g  175 (343)
T PRK06585         96 AALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRITPDARALLVALLG  175 (343)
T ss_pred             HHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhC
Confidence            5677778887777777765433221   222221  12345778889999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHHhhcCC---Cccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHH-----------------HHH
Q psy2281         153 RNLRRAILMCEASKVQQY---PFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVR-----------------TRL  210 (287)
Q Consensus       153 G~~r~al~~l~~~~~~de---p~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~-----------------~~~  210 (287)
                      ||++.+.+.++++.++..   +++..|  ..........++++.+.++..+....+..+.                 ..+
T Consensus       176 ~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~  255 (343)
T PRK06585        176 GDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRALAEGTAPVLILRAALRHF  255 (343)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999998743   344433  2222223344555655544432211111111                 111


Q ss_pred             H------HHHhcCCCHHHHHHHH-----------HHHHHHhCChHHHHHHHHHHHHHhhHHhcCCCh-HHHHHHHHHHHH
Q psy2281         211 Y------ELLVHSIPVNVLFKYL-----------LEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKP-IFHIEAYVASFM  272 (287)
Q Consensus       211 ~------~l~~~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~-~~~l~~~i~~~~  272 (287)
                      .      .+...|.+.+.+....           +....+.++.....+++..+.+.+..++.|..+ .+-||.++.+++
T Consensus       256 r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~le~~i~~~~  335 (343)
T PRK06585        256 QRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAELDCRRNPALADAIARRVLLSIA  335 (343)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            1      1123455555444322           111223577778889999999999999987655 557899998877


Q ss_pred             HHH
Q psy2281         273 AMY  275 (287)
Q Consensus       273 ~~~  275 (287)
                      ...
T Consensus       336 ~~~  338 (343)
T PRK06585        336 VRA  338 (343)
T ss_pred             HHH
Confidence            643

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.32  E-value=5.3e-14  Score=143.20  Aligned_cols=183  Identities=17%  Similarity=0.147  Sum_probs=123.2

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEe-CCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILN-ETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~id-e~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      +.+.++..+++|+.  +.|.|||||||||++++|++.+.+.  .|.+| +.+ +..-....+++.+.+++|++.++. .+
T Consensus       400 vL~~isl~i~~Ge~--vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~-i~~~~~~~lr~~Ig~V~Q~~~LF~-~T  475 (1466)
T PTZ00265        400 IYKDLNFTLTEGKT--YAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHN-LKDINLKWWRSKIGVVSQDPLLFS-NS  475 (1466)
T ss_pred             eeccceEEEcCCCE--EEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcc-hhhCCHHHHHHhccEecccccchh-cc
Confidence            56666667789999  9999999999999999999998766  67774 444 222224557888999999876554 46


Q ss_pred             CCCCCcHHHhc-c-----------------------------c--------------ceeec----CCCCHHHHHHHHHH
Q psy2281          99 SMSQVIPAIRS-R-----------------------------C--------------LCIRI----PAPTHEEIVSVLTN  130 (287)
Q Consensus        99 ~~~~l~~~l~s-r-----------------------------~--------------~~~~~----~~~~~~~~~~~l~~  130 (287)
                      ..+|+..+... +                             |              ..+..    ...++++    +.+
T Consensus       476 I~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----v~~  551 (1466)
T PTZ00265        476 IKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSE----VVD  551 (1466)
T ss_pred             HHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHH----HHH
Confidence            66666543210 0                             0              00000    0122233    334


Q ss_pred             HHHHhCCC-----C----CHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHH--H-
Q psy2281         131 ICKKEGLT-----I----PPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK--L-  193 (287)
Q Consensus       131 ~~~~~~~~-----~----~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~--~-  193 (287)
                      .++..++.     +    +...-+....+|+|+.||     |+...|+++++|||++++|......+.+.+.++.+  . 
T Consensus       552 a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~  631 (1466)
T PTZ00265        552 VSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENR  631 (1466)
T ss_pred             HHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCC
Confidence            44444441     0    111123345689998888     78888999999999999999999888888988864  1 


Q ss_pred             --HHhccChhHHHHHHHHHHHH
Q psy2281         194 --IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       194 --i~~~~~~~~~~~~~~~~~~l  213 (287)
                        |+++|+...+ +.+|+++.+
T Consensus       632 TvIiIsHrls~i-~~aD~Iivl  652 (1466)
T PTZ00265        632 ITIIIAHRLSTI-RYANTIFVL  652 (1466)
T ss_pred             EEEEEeCCHHHH-HhCCEEEEE
Confidence              7899999877 467777655

>KOG0056|consensus

Probab=99.32  E-value=9.5e-13  Score=115.78  Aligned_cols=170  Identities=16%  Similarity=0.194  Sum_probs=118.3

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+.+.++..+..|+.  +.++||+|+||||++|.+.+.....  .|.||+.| +..-.+..||+.++-+||++.++-- +
T Consensus       552 ~vl~disF~v~pGkt--vAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqd-Irnvt~~SLRs~IGVVPQDtvLFNd-T  627 (790)
T KOG0056|consen  552 PVLSDISFTVQPGKT--VALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQD-IRNVTQSSLRSSIGVVPQDTVLFND-T  627 (790)
T ss_pred             ceeecceEEecCCcE--EEEECCCCCchhHHHHHHHHHhhccCceEEEcCch-HHHHHHHHHHHhcCcccCcceeecc-e
Confidence            345666666788888  9999999999999999999987644  89999988 4455688999999999999876543 2


Q ss_pred             CCCCCcHHHhcccceeecCCC--CHHHHHHHHHHHHHHhC-CCCCHHHHH----HHHHHcCCcHHH-----HHHHHHHHh
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAP--THEEIVSVLTNICKKEG-LTIPPEFAL----RLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~~~~~~~----~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      ...|+.           +.+|  +.+++.+..+..--.+. +.+++.-..    +=.++|||+.||     ++...|.++
T Consensus       628 I~yNIr-----------yak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iI  696 (790)
T KOG0056|consen  628 ILYNIR-----------YAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSII  696 (790)
T ss_pred             eeehee-----------ecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEE
Confidence            334432           3333  45565554443221111 122333333    334589999888     566678899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLE  205 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~  205 (287)
                      ++||.++++|..+...+...+.++...   |++.|....+..
T Consensus       697 lLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn  738 (790)
T KOG0056|consen  697 LLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN  738 (790)
T ss_pred             EEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec
Confidence            999999999988887777777777654   666666555443

>TIGR01128 holA DNA polymerase III, delta subunit

Probab=99.31  E-value=7.4e-10  Score=95.98  Aligned_cols=233  Identities=14%  Similarity=0.168  Sum_probs=148.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH-hCCC--EEEEeCCCCCCH-HHHHHHHHHHHhccCCcEEEEEeCCCCC---CcHHHh--
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE-LYGP--VIILNETDHLTR-EAQQALRRTMEKYITTCRLILCANSMSQ---VIPAIR--  108 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~-~~~~--~i~ide~d~l~~-~~~~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~--  108 (287)
                      +.+.|. ......+...+... +.++  +|++++++.+.. ...+.|...++.++.+..+++.++..+.   +...+.  
T Consensus        22 ~~~~~~-e~~~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~  100 (302)
T TIGR01128        22 FRIDGE-EFDWNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKAL  100 (302)
T ss_pred             eeeccC-CCCHHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHh
Confidence            566666 45555554443322 2222  999999998763 4567888899998888777777664432   222333  


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc--CCCcccccCc--cCccHH
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ--QYPFQIDQQI--VEPDWK  184 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~--dep~~~~d~~--~~~~~~  184 (287)
                      ++|.++.|.+++..++..++...+++.|+.+++++.+++++.++||++.+.+.+++++++  +++++..+..  ......
T Consensus       101 ~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~  180 (302)
T TIGR01128       101 KNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSAR  180 (302)
T ss_pred             cCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhc
Confidence            489999999999999999999999999999999999999999999999999999999987  4444332210  000001


Q ss_pred             HHHHHHHHHHHhccChhHH-----------------HHHHHHH---H---HHHhcCCCHHHHHHHH--HHH-------HH
Q psy2281         185 IYIRDTAKLIISEQSPKKL-----------------LEVRTRL---Y---ELLVHSIPVNVLFKYL--LEG-------LL  232 (287)
Q Consensus       185 ~~i~~l~~~i~~~~~~~~~-----------------~~~~~~~---~---~l~~~~~~~~~i~~~~--~~~-------~~  232 (287)
                      ..++++.+.++.......+                 ..+...+   +   .+...|.+++.+...+  +++       ..
T Consensus       181 ~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  260 (302)
T TIGR01128       181 FNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKAL  260 (302)
T ss_pred             CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence            1123333333222111111                 1111111   1   1123444554444321  111       12


Q ss_pred             HhCChHHHHHHHHHHHHHhhHHhc--CCChHHHHHHHHHHH
Q psy2281         233 ANCDSDLKSKSIEMAAMFEHRIHK--GSKPIFHIEAYVASF  271 (287)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~~l~~~i~~~  271 (287)
                      +.++.+....++..+.+.+..++.  +.++.+.||.++.++
T Consensus       261 ~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~  301 (302)
T TIGR01128       261 RRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKL  301 (302)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHh
Confidence            256677788899999999999993  566677899998875

subunit around DNA forming a DNA sliding clamp.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.31  E-value=1.1e-13  Score=108.33  Aligned_cols=125  Identities=22%  Similarity=0.250  Sum_probs=86.2

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      ..++..+.+|+.  ++|.||||+||||+++++++.+.+.  .+.+++.+..... .....+.+.+.++            
T Consensus        16 ~~~~~~i~~g~~--~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~-~~~~~~~i~~~~q------------   80 (157)
T cd00267          16 DNVSLTLKAGEI--VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLP-LEELRRRIGYVPQ------------   80 (157)
T ss_pred             eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCC-HHHHHhceEEEee------------
Confidence            344444567877  9999999999999999999987644  5667764321100 0111111221111            


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                                                                      +|+|+.|+     ++...+.++++|||++++|
T Consensus        81 ------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD  112 (157)
T cd00267          81 ------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLD  112 (157)
T ss_pred             ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence                                                            66666666     6666788999999999999


Q ss_pred             CccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         177 QIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      ......+.+.+.++.+.    ++++|+.+.+...+++++
T Consensus       113 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~  151 (157)
T cd00267         113 PASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVI  151 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence            88888888888877653    678899988888766554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.31  E-value=6.3e-11  Score=115.30  Aligned_cols=160  Identities=18%  Similarity=0.244  Sum_probs=118.2

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------C-------------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------P-------------   62 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------~-------------   62 (287)
                      ++-+...++.++|....++.+..++.....+|++|+||||+|||++++.++..+..          .             
T Consensus       171 ~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~  250 (821)
T CHL00095        171 KEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGT  250 (821)
T ss_pred             HHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccC
Confidence            34456788999999999998988887767777999999999999999999887631          0             


Q ss_pred             -----------------------EEEEeCCCCCCH--------HHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHH
Q psy2281          63 -----------------------VIILNETDHLTR--------EAQQALRRTMEKYITTCRLILCANSMS-----QVIPA  106 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~--------~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~  106 (287)
                                             ++||||+|.+..        +..+.|...+..  ....+|.++|..+     ...++
T Consensus       251 ~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt~~ey~~~ie~D~a  328 (821)
T CHL00095        251 KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATTLDEYRKHIEKDPA  328 (821)
T ss_pred             CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCCHHHHHHHHhcCHH
Confidence                                   889999986542        123444444442  2345566555443     25688


Q ss_pred             HhcccceeecCCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHhh
Q psy2281         107 IRSRCLCIRIPAPTHEEIVSVLTNICK----KEGLTIPPEFALRLAQQSDRNLR------RAILMCEASKV  167 (287)
Q Consensus       107 l~sr~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~s~G~~r------~al~~l~~~~~  167 (287)
                      +.+||..+.+..++.++...+++.+..    ..++.++++++..++++|.|-+.      +|+..++..+.
T Consensus       329 L~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a  399 (821)
T CHL00095        329 LERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS  399 (821)
T ss_pred             HHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence            999999999999999888887776543    24667899999999999987443      48877776553

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.30  E-value=1.3e-11  Score=93.42  Aligned_cols=79  Identities=30%  Similarity=0.387  Sum_probs=64.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------EEEEeCCCCCCHHH------
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP-----------------------------------VIILNETDHLTREA------   76 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------~i~ide~d~l~~~~------   76 (287)
                      ++|+|||||||||+++.+++.+..+                                   ++++||+|.+....      
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~   80 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS   80 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence            5899999999999999999987543                                   99999999987664      


Q ss_pred             -----HHHHHHHHHhccCC---cEEEEEeCCCCCCcHHHh-cccc-eeec
Q psy2281          77 -----QQALRRTMEKYITT---CRLILCANSMSQVIPAIR-SRCL-CIRI  116 (287)
Q Consensus        77 -----~~~l~~~i~~~~~~---~~~i~~~~~~~~l~~~l~-sr~~-~~~~  116 (287)
                           .+.+...++...+.   ..++.+++..+.+.+++. +||. .+.+
T Consensus        81 ~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~  130 (132)
T PF00004_consen   81 FEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEF  130 (132)
T ss_dssp             HHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred             ccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence                 56777888877653   577888888889999999 8885 3444

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0733|consensus

Probab=99.30  E-value=7.6e-11  Score=106.31  Aligned_cols=147  Identities=21%  Similarity=0.257  Sum_probs=98.7

Q ss_pred             CCCCCccCcHHHHHHHHHHHh-----------cCC-CCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLLK-----------EGD-FPH-LLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~-----------~g~-~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      .+++++.+..++...|+..+.           =|- .|. ++++||||||||-|++++|++....               
T Consensus       508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVG  587 (802)
T KOG0733|consen  508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVG  587 (802)
T ss_pred             CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhh
Confidence            367788888888888877761           132 233 9999999999999999999987644               


Q ss_pred             -------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhccC-CcEEEE-EeCCCCCCcHHHhc-
Q psy2281          63 -------------------VIILNETDHLTRE-----------AQQALRRTMEKYIT-TCRLIL-CANSMSQVIPAIRS-  109 (287)
Q Consensus        63 -------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~~-~~~~i~-~~~~~~~l~~~l~s-  109 (287)
                                         +||+||+|.+.+.           ..+.|+.-|+-..+ ..++++ .+|.++.+.+++.. 
T Consensus       588 ESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRP  667 (802)
T KOG0733|consen  588 ESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRP  667 (802)
T ss_pred             hHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCC
Confidence                               9999999987532           24455555555532 234444 45556678888776 


Q ss_pred             -cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHH------HcCCcHHH
Q psy2281         110 -RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQ------QSDRNLRR  157 (287)
Q Consensus       110 -r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~------~s~G~~r~  157 (287)
                       |+ ..+....|+.++..++++.+.+..+..+++++ ++.++.      ++|.|+.-
T Consensus       668 GRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaa  724 (802)
T KOG0733|consen  668 GRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAA  724 (802)
T ss_pred             CccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHH
Confidence             44 24556678889999999998885444444332 344443      45556544

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.29  E-value=6.1e-11  Score=115.41  Aligned_cols=137  Identities=18%  Similarity=0.302  Sum_probs=104.7

Q ss_pred             CCccCcHHHHHHHHHHHhc-------CCCC--cEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281          14 QKLDFHCKQANHLRNLLKE-------GDFP--HLLFYGPSGAGKKTRIMALLKELYGP----------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~-------g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------   62 (287)
                      +.++||+.++..+...+..       ...|  .++|+||+|+|||+++++|+..+++.                      
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~  588 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI  588 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence            4578999998888777732       1223  28999999999999999999987531                      


Q ss_pred             -------------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCCCC----
Q psy2281          63 -------------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSMSQ----  102 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~~~----  102 (287)
                                               +|++||+|.++++.++.|++.++.-           +.++.+|+++|....    
T Consensus       589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~  668 (821)
T CHL00095        589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIET  668 (821)
T ss_pred             CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHh
Confidence                                     8999999999999999999998862           456677777664311    


Q ss_pred             ---------------------------------CcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh-------C--CCC
Q psy2281         103 ---------------------------------VIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE-------G--LTI  139 (287)
Q Consensus       103 ---------------------------------l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~-------~--~~~  139 (287)
                                                       +.|.+.+|+ .++.|.+++.+++.+++...+...       |  +.+
T Consensus       669 ~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~  748 (821)
T CHL00095        669 NSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEV  748 (821)
T ss_pred             hccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEE
Confidence                                             224578888 689999999999999887766542       2  456


Q ss_pred             CHHHHHHHHHH
Q psy2281         140 PPEFALRLAQQ  150 (287)
Q Consensus       140 ~~~~~~~l~~~  150 (287)
                      ++++.+++++.
T Consensus       749 ~~~~~~~La~~  759 (821)
T CHL00095        749 TERIKTLLIEE  759 (821)
T ss_pred             CHHHHHHHHHh
Confidence            78888887764

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.29  E-value=1.5e-10  Score=98.15  Aligned_cols=122  Identities=19%  Similarity=0.266  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------------------------
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------------------------------------   61 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------------------------   61 (287)
                      .+.+.+...+..|..  ++|.||+|||||+++++++..+..                                       
T Consensus         9 ~l~~~~l~~l~~g~~--vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~   86 (262)
T TIGR02640         9 RVTSRALRYLKSGYP--VHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKL   86 (262)
T ss_pred             HHHHHHHHHHhcCCe--EEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhh
Confidence            345566666677766  999999999999999999864321                                       


Q ss_pred             --------------------CEEEEeCCCCCCHHHHHHHHHHHHhc----------------cCCcEEEEEeCCCC----
Q psy2281          62 --------------------PVIILNETDHLTREAQQALRRTMEKY----------------ITTCRLILCANSMS----  101 (287)
Q Consensus        62 --------------------~~i~ide~d~l~~~~~~~l~~~i~~~----------------~~~~~~i~~~~~~~----  101 (287)
                                          .++++||++.++++.++.|+..++.-                .++.++|.++|...    
T Consensus        87 ~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~  166 (262)
T TIGR02640        87 EDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV  166 (262)
T ss_pred             hcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence                                17999999999999999999988641                12456677766542    


Q ss_pred             -CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy2281         102 -QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ  149 (287)
Q Consensus       102 -~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~  149 (287)
                       .+.+++.+||..+.+..|+.++..+++....   ++  ++...+.+++
T Consensus       167 ~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---~~--~~~~~~~iv~  210 (262)
T TIGR02640       167 HETQDALLDRLITIFMDYPDIDTETAILRAKT---DV--AEDSAATIVR  210 (262)
T ss_pred             ecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---CC--CHHHHHHHHH
Confidence             4678899999988898898888888877642   33  5666555554

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PLN03140 ABC transporter G family member; Provisional

Probab=99.29  E-value=4.7e-14  Score=143.09  Aligned_cols=185  Identities=15%  Similarity=0.088  Sum_probs=122.2

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----VIILNETDHLTREAQQALRRTMEKYITTCRLILCA   97 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~   97 (287)
                      ++.++..+++|+.  ++|.||||+|||||+++|++.+.+.     .|.+++.+. ...   ..++.+.+++|+..++...
T Consensus       181 L~~vs~~i~~Ge~--~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~-~~~---~~~~~i~yv~Q~d~~~~~l  254 (1470)
T PLN03140        181 LKDASGIIKPSRM--TLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRL-NEF---VPRKTSAYISQNDVHVGVM  254 (1470)
T ss_pred             ccCCeEEEeCCeE--EEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEec-hhh---cccceeEEecccccCCCcC
Confidence            3444444467888  9999999999999999999987643     677777552 111   1134577777776666666


Q ss_pred             CCCCCCcHHHhcccc--eeec-CCCCHH----------HH--------------HHHHHHHHHHhCCCCCHH---HHHHH
Q psy2281          98 NSMSQVIPAIRSRCL--CIRI-PAPTHE----------EI--------------VSVLTNICKKEGLTIPPE---FALRL  147 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~--~~~~-~~~~~~----------~~--------------~~~l~~~~~~~~~~~~~~---~~~~l  147 (287)
                      |+.+++..+.+-|..  .... ...+.+          ++              ......+++..|+....+   ..+.+
T Consensus       255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~  334 (1470)
T PLN03140        255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI  334 (1470)
T ss_pred             cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence            777777665432210  0000 011111          11              123455677777731100   13345


Q ss_pred             HHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-----HHhccCh-hHHHHHHHHHHHH
Q psy2281         148 AQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSP-KKLLEVRTRLYEL  213 (287)
Q Consensus       148 ~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~-~~~~~~~~~~~~l  213 (287)
                      ..+|||+.||     ++...++++++|||++++|......+.+.++++.+.     ++++|++ ..+..++|+++.|
T Consensus       335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL  411 (1470)
T PLN03140        335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL  411 (1470)
T ss_pred             cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEe
Confidence            6799999998     677778999999999999999999999999998763     6677875 5777888887643

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.29  E-value=6.7e-13  Score=121.55  Aligned_cols=186  Identities=17%  Similarity=0.096  Sum_probs=113.5

Q ss_pred             CCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEe----------CCCCCCH-HH--
Q psy2281          12 NLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILN----------ETDHLTR-EA--   76 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~id----------e~d~l~~-~~--   76 (287)
                      ++...+|...+.+.++..+..|+.  +.|+|+||+|||||+++|++...+.  .|..+          +.+.-.. ..  
T Consensus         8 ~ls~~~g~~~l~~~~~l~~~~G~r--iGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~   85 (530)
T COG0488           8 NLSLAYGDRPLLENVSLTLNPGER--IGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLD   85 (530)
T ss_pred             eeEEeeCCceeecCCcceeCCCCE--EEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHH
Confidence            334444556667777777888988  9999999999999999999998655  22222          1111100 00  


Q ss_pred             --------HHHHHHHHHhccC-CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q psy2281          77 --------QQALRRTMEKYIT-TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL  147 (287)
Q Consensus        77 --------~~~l~~~i~~~~~-~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l  147 (287)
                              ...+.+.++.... ....      .......+..+     +...+.-+....+..++...|+  ++. .+.+
T Consensus        86 ~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~-----~~~~~~~~~e~~~~~~L~gLg~--~~~-~~~~  151 (530)
T COG0488          86 YVIEGFGELRELLAELEEAYALLADP------DDELLAELEAL-----LEELDGWTLEARAEEALLGLGF--PDE-DRPV  151 (530)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhcccc------hhHHHHHHHHH-----HHhhcccchHHHHHHHHhcCCC--Ccc-cCch
Confidence                    0111111111100 0000      11111112211     1112223344566666666666  555 7788


Q ss_pred             HHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhccChhHHHHHHHHHHHH
Q psy2281         148 AQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       148 ~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .++|||+.+|     |+...|.++++||||+.+|..+..-+++.+.+.... |+++||-..+..+|.+++++
T Consensus       152 ~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~l  223 (530)
T COG0488         152 SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILEL  223 (530)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEe
Confidence            9999999888     666678999999999999977665444444443332 78999999999999999866

>PRK08487 DNA polymerase III subunit delta; Validated

Probab=99.29  E-value=7.1e-09  Score=90.81  Aligned_cols=244  Identities=16%  Similarity=0.188  Sum_probs=150.1

Q ss_pred             HHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhC---------CC---------------------EEEEeCCCCCC
Q psy2281          25 HLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELY---------GP---------------------VIILNETDHLT   73 (287)
Q Consensus        25 ~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~---------~~---------------------~i~ide~d~l~   73 (287)
                      .+...+++|++++ ++|+|..-.-....+..+.....         .+                     +|++.+.....
T Consensus         5 ~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~plF~~~rlViv~~~~~~~   84 (328)
T PRK08487          5 ELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKTLYFDEYDFEQAKDFLSQSSLFGGKNLLIIKLDKKIP   84 (328)
T ss_pred             HHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhhhchhhccHHHHHHHHhcccccCCceEEEEecccccC
Confidence            4555566676655 77778766666555555543321         00                     77777765444


Q ss_pred             HHHHHHHHHHHHhccCCcEEEEEeCCCCC---CcHHHhcc--cceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q psy2281          74 REAQQALRRTMEKYITTCRLILCANSMSQ---VIPAIRSR--CLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA  148 (287)
Q Consensus        74 ~~~~~~l~~~i~~~~~~~~~i~~~~~~~~---l~~~l~sr--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~  148 (287)
                      ......|..+++.+++.+.+++.....+.   +...+...  ...+.|.+++..++..|+...+++.|+.+++++.+.++
T Consensus        85 ~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~  164 (328)
T PRK08487         85 KKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKELGLDIDQNALNHLY  164 (328)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            44556777788877655555543322221   11222222  34678888999999999999999999999999999999


Q ss_pred             HHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHH-
Q psy2281         149 QQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFK-  225 (287)
Q Consensus       149 ~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~-  225 (287)
                      +..++|+..+.+.++++.++.++++..|  ..........++++.+.++....   +..+   +..++..|.+|-.|+. 
T Consensus       165 ~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~~---a~~~---l~~L~~~g~~pi~Il~~  238 (328)
T PRK08487        165 FIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKKD---IKDD---LEKLLEEGFNEIALLNS  238 (328)
T ss_pred             HHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCCc---HHHH---HHHHHHCCCCHHHHHHH
Confidence            9999999999999999999877665554  11122223345555555444321   1111   1111122222211111 


Q ss_pred             ---------------------------HH---------HHHHHHhCChHHHHHHHHHHHHHhhHHhcCCCh--HHHHHHH
Q psy2281         226 ---------------------------YL---------LEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKP--IFHIEAY  267 (287)
Q Consensus       226 ---------------------------~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~--~~~l~~~  267 (287)
                                                 .+         .....++++.....+++..+.++|..++.|..+  .+-++.+
T Consensus       239 L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~L~e~D~~lK~g~~~~~~~~~~~~  318 (328)
T PRK08487        239 LERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFELLLEWELELKTGQKIDKNLFLLST  318 (328)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHH
Confidence                                       00         122223577778889999999999999998655  4455555


Q ss_pred             HHHHHHH
Q psy2281         268 VASFMAM  274 (287)
Q Consensus       268 i~~~~~~  274 (287)
                      +..+...
T Consensus       319 ~~~~~~~  325 (328)
T PRK08487        319 LIKIQKI  325 (328)
T ss_pred             HHHHHHH
Confidence            5555544

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.29  E-value=5.8e-11  Score=114.25  Aligned_cols=136  Identities=21%  Similarity=0.301  Sum_probs=102.5

Q ss_pred             CccCcHHHHHHHHHHHhcC-------CCC--cEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------
Q psy2281          15 KLDFHCKQANHLRNLLKEG-------DFP--HLLFYGPSGAGKKTRIMALLKELYGP-----------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~g-------~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------   62 (287)
                      .++||+.+++.+...+...       ..|  +++|+||+|+|||+++++++..+...                       
T Consensus       455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~  534 (731)
T TIGR02639       455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPP  534 (731)
T ss_pred             ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCC
Confidence            4788998888887777421       122  38999999999999999999887431                       


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCCC---------
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSMS---------  101 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~~---------  101 (287)
                                           +|++||++.++++.++.|++.++.-           +.++.+|+++|...         
T Consensus       535 gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~  614 (731)
T TIGR02639       535 GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIG  614 (731)
T ss_pred             CCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCC
Confidence                                 9999999999999999999998753           23455677665431         


Q ss_pred             ----------------CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Q psy2281         102 ----------------QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQ  150 (287)
Q Consensus       102 ----------------~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~  150 (287)
                                      .+.+.+.+|+ .++.|++++.+++.+++...++..         .+.+++++.+++++.
T Consensus       615 f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~  689 (731)
T TIGR02639       615 FGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEK  689 (731)
T ss_pred             cchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHh
Confidence                            1456778888 478999999999999988876532         245577777777764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.29  E-value=1.5e-13  Score=140.76  Aligned_cols=174  Identities=19%  Similarity=0.201  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      .+++.++..+++|+.  +.|+|++|+|||||+++|++..... -|.||+.|. ..-....+++.+..++|++.++ ..|.
T Consensus      1233 ~vL~~is~~I~~Gek--vaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di-~~i~~~~lR~~is~IpQdp~LF-~GTI 1308 (1490)
T TIGR01271      1233 AVLQDLSFSVEGGQR--VGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSW-NSVTLQTWRKAFGVIPQKVFIF-SGTF 1308 (1490)
T ss_pred             ceeeccEEEEcCCCE--EEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEc-ccCCHHHHHhceEEEeCCCccC-ccCH
Confidence            356666777789999  9999999999999999999987522 889999873 3333567889999999988554 4677


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHH----HHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPPEFALRL----AQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~l----~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+|+.+          +...+++++.+.++..    ++     .+++.....+    ..+|+|+.|+     |+...+++
T Consensus      1309 R~NLdp----------~~~~tdeei~~aL~~~----~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271      1309 RKNLDP----------YEQWSDEEIWKVAEEV----GLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred             HHHhCc----------ccCCCHHHHHHHHHHC----CCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence            788855          3345666666655542    32     0011111111    2478887777     66666788


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++||||+++|..+...+.+.+.+..+.   |+++|....+.. +|+++.|
T Consensus      1375 LlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL 1424 (1490)
T TIGR01271      1375 LLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVI 1424 (1490)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEE
Confidence            9999999999998887777777766443   779999887776 6877644

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PRK05574 holA DNA polymerase III subunit delta; Reviewed

Probab=99.29  E-value=4.1e-09  Score=92.87  Aligned_cols=211  Identities=17%  Similarity=0.217  Sum_probs=130.9

Q ss_pred             EEEEeCCCCCCHHH-HHHHHHHHH--hccCCc--EEEEEeCCCC---CC---cHHHhcccceeecCCCCHHHHHHHHHHH
Q psy2281          63 VIILNETDHLTREA-QQALRRTME--KYITTC--RLILCANSMS---QV---IPAIRSRCLCIRIPAPTHEEIVSVLTNI  131 (287)
Q Consensus        63 ~i~ide~d~l~~~~-~~~l~~~i~--~~~~~~--~~i~~~~~~~---~l---~~~l~sr~~~~~~~~~~~~~~~~~l~~~  131 (287)
                      +|++++++.+.... ...+....+  .++++.  .+++..+..+   .+   ...+.+++.++.+.+++..++..++...
T Consensus        79 lvii~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~~~~i~~~  158 (340)
T PRK05574         79 LVELRLPEFLTGAKGEKALKRLEAYLNPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAELPQWIQQR  158 (340)
T ss_pred             EEEEECCCCCCchhHHHHHHHHHHhccCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHHHHHHHHH
Confidence            88999998876542 222322233  233332  3333333222   23   5677788889999999999999999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC--CCcccccC--ccCccHHHHHHHHHHHHHhcc---------
Q psy2281         132 CKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ--YPFQIDQQ--IVEPDWKIYIRDTAKLIISEQ---------  198 (287)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d--ep~~~~d~--~~~~~~~~~i~~l~~~i~~~~---------  198 (287)
                      ++..|+.+++++.+++++.++||+..+.+.++++.++.  .+++..+.  .........++++.+.++...         
T Consensus       159 ~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~~a~~~l~  238 (340)
T PRK05574        159 LKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIKRALRILD  238 (340)
T ss_pred             HHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999998764  33332220  000111112223333322221         


Q ss_pred             -------ChhH-HHHHHHHHH------HHHhcCCCHHHHHHH--HHH-------HHHHhCChHHHHHHHHHHHHHhhHHh
Q psy2281         199 -------SPKK-LLEVRTRLY------ELLVHSIPVNVLFKY--LLE-------GLLANCDSDLKSKSIEMAAMFEHRIH  255 (287)
Q Consensus       199 -------~~~~-~~~~~~~~~------~l~~~~~~~~~i~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~  255 (287)
                             ++-. +..+...+.      .+...|.+++.+.+.  +++       ...+.++.....+++..+.+.+..++
T Consensus       239 ~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L~~~d~~iK  318 (340)
T PRK05574        239 GLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLLAETDYQIK  318 (340)
T ss_pred             HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHh
Confidence                   1101 111111111      112245555554431  111       12235777888899999999999999


Q ss_pred             cCC--ChHHHHHHHHHHHHH
Q psy2281         256 KGS--KPIFHIEAYVASFMA  273 (287)
Q Consensus       256 ~g~--~~~~~l~~~i~~~~~  273 (287)
                      .|.  ++.+.+|.++.+++.
T Consensus       319 ~~~~~~~~~~le~~ii~l~~  338 (340)
T PRK05574        319 TGYGGDKWLELELLLLKLAG  338 (340)
T ss_pred             CCCCCCHHHHHHHHHHHhcc
Confidence            995  778889999988764

>PRK13409 putative ATPase RIL; Provisional

Probab=99.28  E-value=3.4e-13  Score=126.16  Aligned_cols=175  Identities=17%  Similarity=0.154  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEE-----------EeCCCCCCHHHHHHHHHHHHhcc
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VII-----------LNETDHLTREAQQALRRTMEKYI   88 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~-----------ide~d~l~~~~~~~l~~~i~~~~   88 (287)
                      ++..+. .+++|++  +.|.||||+||||++++|++.+.++  .|.           +++.+     .+... ..+... 
T Consensus        89 ~L~~l~-~i~~Gev--~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~-----l~~~~-~~~~~~-  158 (590)
T PRK13409         89 KLYGLP-IPKEGKV--TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTE-----LQNYF-KKLYNG-  158 (590)
T ss_pred             eEecCC-cCCCCCE--EEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChH-----HHHHH-HHHhcc-
Confidence            445555 5678888  9999999999999999999987765  232           22211     11111 111100 


Q ss_pred             CCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          89 TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        89 ~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                       ...+.............+....  ...  +...+....+.++++..++  +....+.+.++|+|+.|+     |+...+
T Consensus       159 -~~~~~~~~q~~~~~p~~~~~tv--~e~--l~~~~~~~~~~~~l~~l~l--~~~~~~~~~~LSgGe~qrv~ia~al~~~p  231 (590)
T PRK13409        159 -EIKVVHKPQYVDLIPKVFKGKV--REL--LKKVDERGKLDEVVERLGL--ENILDRDISELSGGELQRVAIAAALLRDA  231 (590)
T ss_pred             -CcceeecccchhhhhhhhcchH--HHH--HHhhhHHHHHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence             0000000000000000000000  000  0011233456677777777  555677888999999998     666668


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .++++|||++.+|......+.+.+.++.+.   ++++|+...+..++|++..+
T Consensus       232 ~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl  284 (590)
T PRK13409        232 DFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIA  284 (590)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999999988888888887533   77999999999999887544

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=1.1e-10  Score=102.75  Aligned_cols=162  Identities=22%  Similarity=0.330  Sum_probs=113.0

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      +-|-|..   +.+.+.....+...+    ..+...+++++||+|+|||++++-+++++...                   
T Consensus        12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~   88 (366)
T COG1474          12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ   88 (366)
T ss_pred             CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence            3466644   556665555555444    44444449999999999999999999887422                   


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCC-c--EEEEEeCCC--
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITT-C--RLILCANSM--  100 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~-~--~~i~~~~~~--  100 (287)
                                                           +|++||+|.+....+..|...+...... .  .++.++|..  
T Consensus        89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~  168 (366)
T COG1474          89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF  168 (366)
T ss_pred             HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence                                                 8999999998765444444443333222 2  344555544  


Q ss_pred             -CCCcHHHhcccc--eeecCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHH---HHcCCcHHHHHHHHHHHhhcCC
Q psy2281         101 -SQVIPAIRSRCL--CIRIPAPTHEEIVSVLTNICKKE--GLTIPPEFALRLA---QQSDRNLRRAILMCEASKVQQY  170 (287)
Q Consensus       101 -~~l~~~l~sr~~--~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~---~~s~G~~r~al~~l~~~~~~de  170 (287)
                       +.+.+.++|++.  .+.|++++.+++..++...++..  .-.+++++++.++   ...+||.|+|+..+....-..|
T Consensus       169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe  246 (366)
T COG1474         169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE  246 (366)
T ss_pred             HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence             357788888874  47799999999999999887742  2245777777766   4678899999999988776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	287
1sxj_E	354	Crystal Structure Of The Eukaryotic Clamp Loader (R		2e-39
1iqp_A	327	Crystal Structure Of The Clamp Loader Small Subunit		7e-24
2chq_A	319	Replication Factor C Adpnp Complex Length = 319		1e-23
1sxj_D	353	Crystal Structure Of The Eukaryotic Clamp Loader (R		3e-23
2chg_A	226	Replication Factor C Domains 1 And 2 Length = 226		9e-23
1sxj_C	340	Crystal Structure Of The Eukaryotic Clamp Loader (R		2e-21
1sxj_B	323	Crystal Structure Of The Eukaryotic Clamp Loader (R		7e-16
3u5z_B	324	Structure Of T4 Bacteriophage Clamp Loader Bound To		6e-12

>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 354

Iteration: 1
 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/260 (36%), Positives = 146/260 (56%), Gaps = 23/260 (8%)
Query: 36  PHLLFYGPSGAGKKTRIM--ALLKELYG-----------------PVIILNETDHLTREA 76
           P+ L   PS  G   RI+   LLKE+                     +I+NE + LT++A
Sbjct: 91  PYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDA 150
Query: 77  QQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG 136
           Q ALRRTMEKY    RLI+  +SMS +I  I+S+CL IR PAP+  EI ++L+++   E 
Sbjct: 151 QAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER 210
Query: 137 LTIPPEFAL-RLAQQSDRNLRRAILMCEASKV-QQYPFQIDQQIVEPDWKIYIRDTAKLI 194
           + +  +  L R+AQ S+ NLR ++LM E+  +  +   +    I++PDW I I    + I
Sbjct: 211 IQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKI 270
Query: 195 ISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEH 252
           + E+S   L+E R  LY+LL H IP N++ K L   LL     ++  KS  IE +++F+ 
Sbjct: 271 VKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDE 330
Query: 253 RIHKGSKPIFHIEAYVASFM 272
           R+  G+K IFH+E ++A  M
Sbjct: 331 RLSLGNKAIFHLEGFIAKVM 350

>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327

Iteration: 1
 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 66/201 (32%), Positives = 94/201 (46%), Gaps = 39/201 (19%)
Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
           WV+KYRP  L  +         L++ +K G  PHLLF GP G GK T  +AL +EL+G  
Sbjct: 15  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 74
Query: 62  -------------------------------------PVIILNETDHLTREAQQALRRTM 84
                                                 +I L+E D LT++AQQALRRTM
Sbjct: 75  WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 134
Query: 85  EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
           E + +  R IL  N  S++I  I+SRC   R      E+I   L  I + EGL +  E  
Sbjct: 135 EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGL 194
Query: 145 LRLAQQSDRNLRRAILMCEAS 165
             +   ++ ++RRAI + +A+
Sbjct: 195 QAILYIAEGDMRRAINILQAA 215

>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 53/313 (16%)
Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
           +WV+KYRP  L ++    +    L+  ++  + PHLLF GP G GK    +AL ++L+G 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65
Query: 63  ---------------------------------------VIILNETDHLTREAQQALRRT 83
                                                  +I L+E D LT +AQ ALRRT
Sbjct: 66  NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125
Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME Y  +CR IL  N +S++I  I+SRC   R      E +   L  IC+KEG+ I  + 
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185
Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK-----LIISEQ 198
              L   S  + R+AI   + +           ++V+ D    I  TA+      +I   
Sbjct: 186 LEALIYISGGDFRKAINALQGAAAI-------GEVVDADTIYQITATARPEEMTELIQTA 238
Query: 199 SPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLANCDSD-LKSKSIEMAAMFEHRIHK 256
                +E R  L  L+V + +    +   L   +++    D LK + I+     + R+ +
Sbjct: 239 LKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTE 298
Query: 257 GSKPIFHIEAYVA 269
           G+     ++AY+A
Sbjct: 299 GANERIQLDAYLA 311

>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/218 (31%), Positives = 94/218 (43%), Gaps = 51/218 (23%)
Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
           WV+KYRP NL ++         L+  LK  + PH+LFYGP G GK + I+AL KELYGP 
Sbjct: 27  WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 63  -------------------------------------------------VIILNETDHLT 73
                                                            +IIL+E D +T
Sbjct: 87  LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query: 74  REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
            +AQ ALRRTME Y    R  L  N ++++I  + S+C   R  A      +  L  I +
Sbjct: 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISE 206
Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAI-LMCEASKVQQY 170
           +E +        R+   S  +LRR I L+  ASK  QY
Sbjct: 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQY 244

>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 90/198 (45%), Gaps = 39/198 (19%)
Query: 1   MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY 60
             +WV+KYRP  L ++    +    L+  ++  + PHLLF GP G GK    +AL ++L+
Sbjct: 4   FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLF 63
Query: 61  G---------------------------------------PVIILNETDHLTREAQQALR 81
           G                                        +I L+E D LT +AQ ALR
Sbjct: 64  GENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALR 123
Query: 82  RTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPP 141
           RTME Y  +CR IL  N +S++I  I+SRC   R      E +   L  IC+KEG+ I  
Sbjct: 124 RTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITE 183
Query: 142 EFALRLAQQSDRNLRRAI 159
           +    L   S  + R+AI
Sbjct: 184 DGLEALIYISGGDFRKAI 201

>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 39/203 (19%)
Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
           WV+KYRP  L ++    +    +R  + EG  PHLLFYGP G GK + I+AL +E+YG  
Sbjct: 15  WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74
Query: 62  -------------------------------------PVIILNETDHLTREAQQALRRTM 84
                                                 +IIL+E D +T  AQ ALRR +
Sbjct: 75  YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 134
Query: 85  EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
           E+Y    R  + AN   ++ PA+ S+C   R      E I   + N+   E L + P   
Sbjct: 135 ERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 194
Query: 145 LRLAQQSDRNLRRAILMCEASKV 167
             L + S+ ++RR + + ++ K 
Sbjct: 195 KALIELSNGDMRRVLNVLQSCKA 217

>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 40/196 (20%)
Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-- 61
           WV+KYRP  L  +  + +  + L+ + K+G+ PH++  G  G GK T +  L  EL G  
Sbjct: 11  WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS 70
Query: 62  --------------------------------------PVIILNETDHLTREAQQALRRT 83
                                                  ++IL+E D +T  AQQALRRT
Sbjct: 71  YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRT 130
Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME Y  + R     N  +++I  ++S+C  +R    + E+++  L  I K E +    + 
Sbjct: 131 MELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDG 190
Query: 144 ALRLAQQSDRNLRRAI 159
              +   ++ ++R+AI
Sbjct: 191 LEAIIFTAEGDMRQAI 206

>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4 Clamp, Primer-Template Dna, And Atp Analog Length = 324

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 77/174 (44%), Gaps = 41/174 (23%)
Query: 7   KYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPS-GAGKKTRIMALLKELY----- 60
           KYRP+ + +           +++  +G  PH++ + PS G GK T   AL  ++      
Sbjct: 19  KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMF 78
Query: 61  ------------GP---------------VIILNETDHLT-REAQQALRRTMEKYITTCR 92
                       GP               VI+++E D     E+Q+ LR  ME Y + C 
Sbjct: 79  VNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCS 138
Query: 93  LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-------LTNICKKEGLTI 139
           +I+ AN++  +I  ++SRC  I    PT E+ + +       LT ICK EG+ I
Sbjct: 139 IIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	287
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	3e-90
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	3e-80
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	2e-75
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	3e-21
2chq_A	319	Replication factor C small subunit; DNA-binding pr	1e-53
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	5e-50
2chg_A	226	Replication factor C small subunit; DNA-binding pr	2e-49
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	1e-47
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	3e-38
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	2e-36
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-12
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	1e-11
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	2e-06

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353

 Score =  270 bits (693), Expect = 3e-90
 Identities = 74/328 (22%), Positives = 124/328 (37%), Gaps = 56/328 (17%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
            WV+KYRP NL ++         L+  LK  + PH+LFYGP G GK + I+AL KELYGP
Sbjct: 26  PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85

Query: 63  --------------------------------------------------VIILNETDHL 72
                                                             +IIL+E D +
Sbjct: 86  DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145

Query: 73  TREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC 132
           T +AQ ALRRTME Y    R  L  N ++++I  + S+C   R  A      +  L  I 
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFIS 205

Query: 133 KKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYI----R 188
           ++E +        R+   S  +LRR I + +++          + I     +        
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265

Query: 189 DTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLAN--CDSDLKSKSIEM 246
           D    I+ +       E++  +   +        +   L E  + N   D++ K++   +
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWL 325

Query: 247 AAMFEHRIHKGSKPIFHIEAYVASFMAM 274
               + R++ G+     +   +     +
Sbjct: 326 LFTTDSRLNNGTNEHIQLLNLLVKISQL 353

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327

 Score =  244 bits (625), Expect = 3e-80
 Identities = 81/314 (25%), Positives = 132/314 (42%), Gaps = 43/314 (13%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
            WV+KYRP  L  +         L++ +K G  PHLLF GP G GK T  +AL +EL+G 
Sbjct: 14  PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73

Query: 63  ---------------------------------------VIILNETDHLTREAQQALRRT 83
                                                  +I L+E D LT++AQQALRRT
Sbjct: 74  NWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRT 133

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME + +  R IL  N  S++I  I+SRC   R      E+I   L  I + EGL +  E 
Sbjct: 134 MEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEG 193

Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKL 203
              +   ++ ++RRAI + +A+        I  + V         +  + ++        
Sbjct: 194 LQAILYIAEGDMRRAINILQAAAALDKK--ITDENVFMVASRARPEDIREMMLLALKGNF 251

Query: 204 LEVRTRLYELLV-HSIPVNVLFKYLLEGLL-ANCDSDLKSKSIEMAAMFEHRIHKGSKPI 261
           L+ R +L E+L+   +    +   + + +     +   K    +    +  R+ +G+  I
Sbjct: 252 LKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEI 311

Query: 262 FHIEAYVASFMAMY 275
             +EA +A F  + 
Sbjct: 312 IQLEALLAQFTLIG 325

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354

 Score =  233 bits (595), Expect = 2e-75
 Identities = 85/216 (39%), Positives = 132/216 (61%), Gaps = 4/216 (1%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
            +I+NE + LT++AQ ALRRTMEKY    RLI+  +SMS +I  I+S+CL IR PAP+  
Sbjct: 137 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDS 196

Query: 123 EIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQQIVE 180
           EI ++L+++   E + +  +  L R+AQ S+ NLR ++LM E+  +  +   +    I++
Sbjct: 197 EISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIK 256

Query: 181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--NCDSD 238
           PDW I I    + I+ E+S   L+E R  LY+LL H IP N++ K L   LL     ++ 
Sbjct: 257 PDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTT 316

Query: 239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM 274
            KS  IE +++F+ R+  G+K IFH+E ++A  M  
Sbjct: 317 NKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCC 352

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354

 Score = 90.7 bits (225), Expect = 3e-21
 Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 1  MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL 59
          MSLWVDKYRP +L  L  + +  N L++L  +  D PHLL YGP+G GKKTR MALL+ +
Sbjct: 1  MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60

Query: 60 YGPVIILNETDHLT 73
          +GP +   + D   
Sbjct: 61 FGPGVYRLKIDVRQ 74

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319

 Score =  175 bits (447), Expect = 1e-53
 Identities = 79/314 (25%), Positives = 128/314 (40%), Gaps = 43/314 (13%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
           +WV+KYRP  L ++    +    L+  ++  + PHLLF GP G GK    +AL ++L+G 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65

Query: 63  ---------------------------------------VIILNETDHLTREAQQALRRT 83
                                                  +I L+E D LT +AQ ALRRT
Sbjct: 66  NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME Y  +CR IL  N +S++I  I+SRC   R      E +   L  IC+KEG+ I  + 
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185

Query: 144 ALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKL 203
              L   S  + R+AI   + +        +D   +         +    +I        
Sbjct: 186 LEALIYISGGDFRKAINALQGAAAIGE--VVDADTIYQITATARPEEMTELIQTALKGNF 243

Query: 204 LEVRTRLYELLVHS-IPVNVLFKYLLEGLL-ANCDSDLKSKSIEMAAMFEHRIHKGSKPI 261
           +E R  L  L+V   +    +   L   ++       LK + I+     + R+ +G+   
Sbjct: 244 MEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANER 303

Query: 262 FHIEAYVASFMAMY 275
             ++AY+A    + 
Sbjct: 304 IQLDAYLAYLSTLA 317

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340

 Score =  167 bits (425), Expect = 5e-50
 Identities = 72/318 (22%), Positives = 122/318 (38%), Gaps = 49/318 (15%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
            WV+KYRP  L ++    +    +R  + EG  PHLLFYGP G GK + I+AL +E+YG 
Sbjct: 14  PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK 73

Query: 63  ---------------------------------------VIILNETDHLTREAQQALRRT 83
                                                  +IIL+E D +T  AQ ALRR 
Sbjct: 74  NYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRV 133

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           +E+Y    R  + AN   ++ PA+ S+C   R      E I   + N+   E L + P  
Sbjct: 134 IERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNA 193

Query: 144 ALRLAQQSDRNLRRAILMCEASKV---QQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSP 200
              L + S+ ++RR + + ++ K         +I   ++            K ++     
Sbjct: 194 EKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILE 253

Query: 201 KKLLEVRTRLYELLV---HSIP--VNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIH 255
                    L ++      ++   +  + K L +      + + +   +   A  E+ I 
Sbjct: 254 DDWGTAHYTLNKVRSAKGLALIDLIEGIVKILED--YELQNEETRVHLLTKLADIEYSIS 311

Query: 256 KGSKPIFHIEAYVASFMA 273
           KG        A + +  A
Sbjct: 312 KGGNDQIQGSAVIGAIKA 329

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226

 Score =  162 bits (411), Expect = 2e-49
 Identities = 63/196 (32%), Positives = 90/196 (45%), Gaps = 39/196 (19%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
           +WV+KYRP  L ++    +    L+  ++  + PHLLF GP G GK    +AL ++L+G 
Sbjct: 6   IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE 65

Query: 63  ---------------------------------------VIILNETDHLTREAQQALRRT 83
                                                  +I L+E D LT +AQ ALRRT
Sbjct: 66  NWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRT 125

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME Y  +CR IL  N +S++I  I+SRC   R      E +   L  IC+KEG+ I  + 
Sbjct: 126 MEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG 185

Query: 144 ALRLAQQSDRNLRRAI 159
              L   S  + R+AI
Sbjct: 186 LEALIYISGGDFRKAI 201

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323

 Score =  160 bits (407), Expect = 1e-47
 Identities = 67/313 (21%), Positives = 129/313 (41%), Gaps = 44/313 (14%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP 62
            WV+KYRP  L  +  + +  + L+ + K+G+ PH++  G  G GK T +  L  EL G 
Sbjct: 10  PWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGR 69

Query: 63  ----------------------------------------VIILNETDHLTREAQQALRR 82
                                                   ++IL+E D +T  AQQALRR
Sbjct: 70  SYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRR 129

Query: 83  TMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE 142
           TME Y  + R     N  +++I  ++S+C  +R    + E+++  L  I K E +    +
Sbjct: 130 TMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTND 189

Query: 143 FALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQSPKK 202
               +   ++ ++R+AI   +++ V  +       + +     +     K++++      
Sbjct: 190 GLEAIIFTAEGDMRQAINNLQST-VAGHGLVNADNVFKIVDSPHPLIVKKMLLASNLEDS 248

Query: 203 LLEVRTRLYELLVHSI-PVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPI 261
           +  +RT L++    SI  V   F+      LA     ++ + I+   +   RI +G    
Sbjct: 249 IQILRTDLWKKGYSSIDIVTTSFRVTKN--LAQVKESVRLEMIKEIGLTHMRILEGVGTY 306

Query: 262 FHIEAYVASFMAM 274
             + + +A    +
Sbjct: 307 LQLASMLAKIHKL 319

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324

 Score =  135 bits (343), Expect = 3e-38
 Identities = 59/315 (18%), Positives = 116/315 (36%), Gaps = 54/315 (17%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPS-GAGKKTRIMALLKELYG 61
           +   KYRP+ + +           +++  +G  PH++ + PS G GK T   AL  ++  
Sbjct: 15  ILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA 74

Query: 62  P--------------------------------VIILNETDHL-TREAQQALRRTMEKYI 88
                                            VI+++E D     E+Q+ LR  ME Y 
Sbjct: 75  DMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS 134

Query: 89  TTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSV-------LTNICKKEGLTIPP 141
           + C +I+ AN++  +I  ++SRC  I    PT E+ + +       LT ICK EG+ I  
Sbjct: 135 SNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD 194

Query: 142 EFALR-LAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEP--DWKIYIRDTAKLIISEQ 198
              +  L +++  + R+ I   ++   +     +D  I+    + +  I D  + + +  
Sbjct: 195 MKVVAALVKKNFPDFRKTIGELDSYSSK---GVLDAGILSLVTNDRGAIDDVLESLKN-- 249

Query: 199 SPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS 258
             K + ++R    +        +     L E + +        +  E+           +
Sbjct: 250 --KDVKQLRALAPKYAADY---SWFVGKLAEEIYSRVTPQSIIRMYEIVGENNQYHGIAA 304

Query: 259 KPIFHIEAYVASFMA 273
               H+         
Sbjct: 305 NTELHLAYLFIQLAC 319

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516

 Score =  134 bits (339), Expect = 2e-36
 Identities = 55/337 (16%), Positives = 97/337 (28%), Gaps = 83/337 (24%)

Query: 3   LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------------GDFPHLLFYGPSG 45
           LW  KY P NLQ++  +      L+N L                   G F   + YGP G
Sbjct: 28  LWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPG 87

Query: 46  AGKKTRIMALLKELY--------------------------------------------- 60
            GK T    + +EL                                              
Sbjct: 88  IGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNG 147

Query: 61  -GPVIILNETDHLTREAQQALRRTMEKYITTCRLILCA--NSMSQVIPAIRSRCLCIRIP 117
              VII++E D ++   +  + +  +    T   ++          +      CL I+  
Sbjct: 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFR 207

Query: 118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ- 176
            P    I S L  I  +E   + P    RL Q +  ++R+ I +             +  
Sbjct: 208 RPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTINHENI 267

Query: 177 ----QIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHS------IPVNVLFKY 226
               +  E +  +   D A  ++  Q    +      L + +          P+ +   Y
Sbjct: 268 NEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENY 327

Query: 227 LLEGLLANCDSDLKSKSIEMAA-------MFEHRIHK 256
           L              +++  AA       + E +I  
Sbjct: 328 LSTRPSVLKPGQSHLEAVAEAANCISLGDIVEKKIRS 364

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 9e-12
 Identities = 62/398 (15%), Positives = 114/398 (28%), Gaps = 132/398 (33%)

Query: 3   LW--VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKT---------- 50
           L+     +   N+ +L  + K    L  L       ++L  G  G+GK            
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPA---KNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 51  ---------------------RIMALLKELYGPVI--ILNETDHLTR------EAQQALR 81
                                 ++ +L++L   +     + +DH +         Q  LR
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 82  RTM-EKYITTCRLIL-------CANSM---SQVIPAIRSRCLCIRIPA--PTHEEIVSVL 128
           R +  K    C L+L         N+     +++   R + +   + A   TH  +    
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 129 TNICKKEGLTIPPEFALRLAQQSDRNLRR--------AILMCEASKVQQYPFQIDQQIVE 180
             +   E  ++       L  +    L R         + +  A  ++      D     
Sbjct: 296 MTLTPDEVKSL---LLKYLDCRPQD-LPREVLTTNPRRLSII-AESIRDGLATWDN---- 346

Query: 181 PDWKIYIRDTAKLIISEQSPKKL--LEVRTRLYELL------VHSIPVNVLFKY------ 226
             WK    D    II E S   L   E R ++++ L       H IP  +L         
Sbjct: 347 --WKHVNCDKLTTII-ESSLNVLEPAEYR-KMFDRLSVFPPSAH-IPTILLSLIWFDVIK 401

Query: 227 -----LLEGL----LANCDS------------DLKSKSIEMAAMFEHRI----------- 254
                ++  L    L                 +LK K     A+  HR            
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--HRSIVDHYNIPKTF 459

Query: 255 HKGSKPIFHIEAYVASFMAMYLQFME-----DTLSNLF 287
                   +++ Y  S +  +L+ +E          +F
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 26/152 (17%), Positives = 53/152 (34%), Gaps = 15/152 (9%)

Query: 29  LLKEGDFPHLLFYGPSGAGKKTR---IMALLKELYGP-------VIILNETDHLTREAQQ 78
           L++ G  P      P           +  + ++L          V+ + +   LT  A  
Sbjct: 67  LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126

Query: 79  ALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT 138
           AL +T+E+        L      +++  +RSRC    +  P  +  V+ L        +T
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SREVT 181

Query: 139 IPPEFALRLAQQSDRNLRRAILMCEASKVQQY 170
           +  +  L   + S  +   A+ + +    Q  
Sbjct: 182 MSQDALLAALRLSAGSPGAALALFQGDNWQAR 213

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 58  ELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV-----------IPA 106
           E+   V+ ++E   L  E+   L R +E  +    LI+  N                IP 
Sbjct: 187 EIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPI 245

Query: 107 -IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ-SDRNLRRAI 159
            +  R L +     + ++   +L   C++E + +  +    L +   + +LR AI
Sbjct: 246 DLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAI 300

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	287
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	100.0
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	100.0
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	100.0
2chq_A	319	Replication factor C small subunit; DNA-binding pr	100.0
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	100.0
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	100.0
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	100.0
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.97
3pvs_A	447	Replication-associated recombination protein A; ma	99.97
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.94
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.93
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.93
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.91
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.91
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.87
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	99.87
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.86
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.85
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.85
3bos_A	242	Putative DNA replication factor; P-loop containing	99.83
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.82
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.82
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.8
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.79
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.78
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.78
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.77
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.77
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.77
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.77
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.77
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.77
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.76
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.76
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.76
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.75
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.75
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.75
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.74
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.74
1g6h_A	257	High-affinity branched-chain amino acid transport	99.74
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.74
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.74
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.73
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.73
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.72
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.71
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.71
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.71
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.7
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.7
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.69
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.69
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.69
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.69
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.68
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.68
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.68
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.68
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.68
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.68
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.68
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.67
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.67
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.65
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.65
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.65
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.65
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.64
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.63
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.63
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.63
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.63
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.62
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.62
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.61
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.6
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.59
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.59
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.58
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.58
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.58
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.57
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.57
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.56
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.55
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.54
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.54
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.54
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.54
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.53
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.52
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.52
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.52
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.51
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.5
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.49
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.48
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.48
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.48
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.46
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.46
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.45
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.45
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.44
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.42
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.42
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.39
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.39
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.39
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.39
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.36
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.36
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.35
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.35
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.34
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.31
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.31
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.3
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.3
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.28
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.28
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.27
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.24
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.22
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.22
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.21
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.21
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.21
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.2
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.2
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.19
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	99.19
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.18
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.18
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.13
1tue_A	212	Replication protein E1; helicase, replication, E1E	99.12
3co5_A	143	Putative two-component system transcriptional RES	99.12
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.11
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.05
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.04
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.03
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.02
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.98
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.95
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	98.95
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	98.9
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.88
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.85
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.8
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.77
2qgz_A	308	Helicase loader, putative primosome component; str	98.73
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	98.69
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.68
2fna_A	357	Conserved hypothetical protein; structural genomic	98.64
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.6
3f8t_A	506	Predicted ATPase involved in replication control,	98.59
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.54
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.48
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.44
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.43
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.43
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.42
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.38
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.37
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.36
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.33
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.29
1e69_A	322	Chromosome segregation SMC protein; structural mai	98.28
2og2_A	359	Putative signal recognition particle receptor; nuc	98.26
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.25
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.2
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	98.18
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.13
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	98.08
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.07
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.05
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.03
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.02
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.02
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.01
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.0
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.0
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.0
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.98
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.98
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.97
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.96
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.95
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.93
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.93
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.91
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.91
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.91
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.88
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.85
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.85
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.84
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.83
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.83
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.81
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.81
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.81
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.8
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.79
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.79
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.78
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.78
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.77
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.77
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.74
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.74
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.74
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.73
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.73
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.72
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.7
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.7
3ctd_A	213	Putative ATPase, AAA family; structural genomics,	97.69
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.69
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.68
3bge_A	201	Predicted ATPase; structural genomics, predicted A	97.67
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.67
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.67
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.66
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.66
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.64
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.62
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.62
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.6
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	97.6
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.59
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.59
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.58
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.58
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.57
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.57
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.56
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.56
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.55
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	97.55
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	97.54
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.53
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.52
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.52
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.52
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.51
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.5
1via_A	175	Shikimate kinase; structural genomics, transferase	97.5
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.49
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.47
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.47
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.46
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.44
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.43
2r9g_A	204	AAA ATPase, central region; structural genomics, P	97.43
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.41
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.41
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.41
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.38
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.36
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.36
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.36
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.36
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.36
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.35
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.35
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.34
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.34
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.33
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.33
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.33
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.31
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.31
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.31
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.3
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.3
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.3
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.3
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.29
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.29
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.29
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.28
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.27
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.27
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.27
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.26
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.26
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.25
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.24
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.24
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.23
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.22
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.21
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.21
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.21
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.2
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.2
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.18
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.17
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.16
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.15
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.15
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.14
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.14
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	97.14
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.14
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.12
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.11
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.11
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.11
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.11
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.1
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.1
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.1
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.09
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.08
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.07
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.07
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.07
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.06
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	97.06
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.06
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.04
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.04
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.02
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.02
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.01
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.01
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.99
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.97
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.96
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.96
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.96
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.96
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.96
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.95
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.94
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.92
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.92
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.92
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.92
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.9
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.9
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.89
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.89
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.89
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.88
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.87
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.86
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.86
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	96.86
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.85
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.84
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.83
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.83
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.83
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.83
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.82
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.82
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.82
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.81
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.81
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.81
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.8
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.8
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	96.78
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.77
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.77
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.77
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.76
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.76
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.75
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.75
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.75
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.74
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.74
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.74
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.74
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.73
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.72
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	96.72
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.72
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.72
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.71
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.71
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.71
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.71
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.71
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.71
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.7
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.7
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.69
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.69
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.67
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.67
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.66
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.65
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.65
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.65
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.64
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.63
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	96.62
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.61
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.61
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.61
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.6
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.57
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.56
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.56
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.56
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.55
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.55
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.54
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.53
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.53
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.52
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.52
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.52
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.51
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.51
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.5
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.49
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.49
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.49
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.49
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.49
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.48
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.47
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.47
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.46
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.46
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.46
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.46
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.46
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.46
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.45
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.44
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.43
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	96.43
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.43
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.43
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.42
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.41
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.41
3io5_A	333	Recombination and repair protein; storage dimer, i	96.4
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.4
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.39
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.38
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.37
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.35
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.35
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.33
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.32
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	96.32
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.32
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.32
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.3
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.29
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.28
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.27
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.26
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.24
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.24
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.23
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.22
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.21
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.21
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.2
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.2
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	96.18
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.17
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.17
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.15
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.14
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	96.13
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.13
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.13
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.11
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.11
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.1
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.09
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.09
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.08
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.05
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.05
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	96.05
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.02
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.99
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.98
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.96
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	95.95
3h1t_A	590	Type I site-specific restriction-modification syst	95.93
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.91
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.9
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.89

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=1.3e-41  Score=299.63  Aligned_cols=275  Identities=43%  Similarity=0.745  Sum_probs=247.2

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHH-hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC-------------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLL-KEGDFPHLLFYGPSGAGKKTRIMALLKELY-------------------   60 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-------------------   60 (287)
                      ||+|++||||++|++++|+..+.+.++.++ ..|..||++|+||||+||||+++++++.+.                   
T Consensus         1 m~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~   80 (354)
T 1sxj_E            1 MSLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN   80 (354)
T ss_dssp             ---CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred             CCcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc
Confidence            889999999999999999999999999999 888888999999999999999999998421                   


Q ss_pred             ------------------------------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHh
Q psy2281          61 ------------------------------------------------------GPVIILNETDHLTREAQQALRRTMEK   86 (287)
Q Consensus        61 ------------------------------------------------------~~~i~ide~d~l~~~~~~~l~~~i~~   86 (287)
                                                                            +.++++||++.++...++.+++.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~  160 (354)
T 1sxj_E           81 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK  160 (354)
T ss_dssp             -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred             ccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence                                                                  01788999999999999999999999


Q ss_pred             ccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHHHHHHH
Q psy2281          87 YITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEAS  165 (287)
Q Consensus        87 ~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~al~~l~~~  165 (287)
                      +++++.++++++..+.+.++++|||..++|++++.+++.+++..+++++|+.++ +++.+.+++.++|++|++++.++.+
T Consensus       161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~  240 (354)
T 1sxj_E          161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM  240 (354)
T ss_dssp             STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred             hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            888889999999999999999999999999999999999999999999999888 9999999999999999999999999


Q ss_pred             hhcCC-CcccccCccCccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hCChHHHHH
Q psy2281         166 KVQQY-PFQIDQQIVEPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--NCDSDLKSK  242 (287)
Q Consensus       166 ~~~de-p~~~~d~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~  242 (287)
                      ..... +++..+......+.+.++++.+.++.......+..+.+.+++++..|+++..++.+++.++.+  +++...+.+
T Consensus       241 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~l~~  320 (354)
T 1sxj_E          241 ALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSS  320 (354)
T ss_dssp             HHTTTTEECSSCCCCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHH
T ss_pred             HHhCCCCcCcCcCCCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHH
Confidence            88765 566555555566777888999988887777888889999999999999999999999998887  789999999


Q ss_pred             HHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         243 SIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       243 ~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                      +++.+++++++++.|.++.+|||.++++++..+
T Consensus       321 ~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~  353 (354)
T 1sxj_E          321 IIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL  353 (354)
T ss_dssp             HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=7.5e-38  Score=274.32  Aligned_cols=272  Identities=27%  Similarity=0.434  Sum_probs=230.8

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--------------------   61 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--------------------   61 (287)
                      .+|++||||++|++++|+..+++.++..+++|+.||++|+||||+||||+++++++.+.+                    
T Consensus        13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~   92 (340)
T 1sxj_C           13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDV   92 (340)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHH
T ss_pred             CchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHH
Confidence            489999999999999999999999999999999999999999999999999999987521                    


Q ss_pred             -------------------CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281          62 -------------------PVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE  122 (287)
Q Consensus        62 -------------------~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~  122 (287)
                                         .++++||+|.++..++++|++.++.++.++.++++++....+.++++|||..+.|.+++.+
T Consensus        93 ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~  172 (340)
T 1sxj_C           93 VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQE  172 (340)
T ss_dssp             HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHH
T ss_pred             HHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHH
Confidence                               1889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-----Cccccc--CccCccHHHHHHHHHHHHH
Q psy2281         123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-----PFQIDQ--QIVEPDWKIYIRDTAKLII  195 (287)
Q Consensus       123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-----p~~~~d--~~~~~~~~~~i~~l~~~i~  195 (287)
                      ++.+++..+++.+++.+++++.+.++++|+|++|++++.++.+.....     +++..+  ..........+.++.+.+.
T Consensus       173 ~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~~~i~~l~~~i~  252 (340)
T 1sxj_C          173 AIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSIL  252 (340)
T ss_dssp             HHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999988898899999999999999999999999988776533     222211  1111122345666666665


Q ss_pred             hccChhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH-hCC-hHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHH
Q psy2281         196 SEQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCD-SDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM  272 (287)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~  272 (287)
                      ..    ++..+.+.+.+++. .|+++..++..+...+.+ .++ ...+..+++.+++++.+++.|+++.++||.++++++
T Consensus       253 ~~----~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~  328 (340)
T 1sxj_C          253 ED----DWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIK  328 (340)
T ss_dssp             TS----CHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             cC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            42    34455566667776 899999999988777654 466 788999999999999999999999999999999998


Q ss_pred             HHHHH
Q psy2281         273 AMYLQ  277 (287)
Q Consensus       273 ~~~~~  277 (287)
                      ..++.
T Consensus       329 ~~~~~  333 (340)
T 1sxj_C          329 ASFEN  333 (340)
T ss_dssp             HHCCC
T ss_pred             HHhhh
Confidence            76554

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=100.00  E-value=1.9e-36  Score=263.67  Aligned_cols=265  Identities=21%  Similarity=0.340  Sum_probs=220.1

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      .+|++||||++|++++|+..++..+..++..|..|+ ++++||||+||||+++++++.+..+                  
T Consensus        14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~   93 (324)
T 3u61_B           14 HILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPL   93 (324)
T ss_dssp             SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHH
T ss_pred             chHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHH
Confidence            389999999999999999999999999999999888 6788889999999999999887432                  


Q ss_pred             --------------EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHH----
Q psy2281          63 --------------VIILNETDHLT-REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE----  123 (287)
Q Consensus        63 --------------~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~----  123 (287)
                                    +++|||+|.++ .+.++.|++.++.++.++.+|++++....+.++++|||.++.|++|+.++    
T Consensus        94 ~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~i  173 (324)
T 3u61_B           94 TNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEM  173 (324)
T ss_dssp             HHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHH
T ss_pred             HHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHH
Confidence                          89999999999 88999999999998888999999999999999999999999999999877    


Q ss_pred             ---HHHHHHHHHHHhCCCCCH-HHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHHHHhccC
Q psy2281         124 ---IVSVLTNICKKEGLTIPP-EFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKLIISEQS  199 (287)
Q Consensus       124 ---~~~~l~~~~~~~~~~~~~-~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~i~~~~~  199 (287)
                         +.+++..++..+++.+++ ++.+.+++.++||+|++++.++.+. ..++++..+........+.+.++.+.+...  
T Consensus       174 l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~i~~~~v~~~~~~~~~i~~~~~~~~~~--  250 (324)
T 3u61_B          174 MKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGVLDAGILSLVTNDRGAIDDVLESLKNK--  250 (324)
T ss_dssp             HHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTCBCC------------CHHHHHHHHTT--
T ss_pred             HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCCCCHHHHHHHhCCHHHHHHHHHHHHcC--
Confidence               455667777888999888 9999999999999999999999988 334443332111111112344555544332  


Q ss_pred             hhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         200 PKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                        +...+...+++++.   +|..++.+++.++.+.++...+.++++.+++.+++++.|.++.+|||.|+++++..
T Consensus       251 --~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~  320 (324)
T 3u61_B          251 --DVKQLRALAPKYAA---DYSWFVGKLAEEIYSRVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLACE  320 (324)
T ss_dssp             --CHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence              44455556666655   89999999999999999999999999999999999999999999999999999875

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=100.00  E-value=2.2e-34  Score=249.60  Aligned_cols=270  Identities=30%  Similarity=0.515  Sum_probs=228.5

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      +.+|++||||++|++++|+...++.+...+..+..||++|+||+|+|||++++++++.+.+.                  
T Consensus         4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~   83 (319)
T 2chq_A            4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID   83 (319)
T ss_dssp             --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTT
T ss_pred             cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChH
Confidence            35899999999999999999999999999999998889999999999999999999875211                  


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCH
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH  121 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~  121 (287)
                                           ++++||+|.++...++.|++.++.++.++.++++++..+.+.+++++||..+.|.+++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~  163 (319)
T 2chq_A           84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK  163 (319)
T ss_dssp             TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCH
T ss_pred             HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCH
Confidence                                 89999999999999999999999988888999999988899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccC
Q psy2281         122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQS  199 (287)
Q Consensus       122 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~  199 (287)
                      +++..++...++..|+.+++++.+.+++.++|++|++++.++.+...++.++..+  ..........+.++.+.+...  
T Consensus       164 ~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~~~~l~~~~~~~--  241 (319)
T 2chq_A          164 EAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARPEEMTELIQTALKG--  241 (319)
T ss_dssp             HHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHHTTCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHhC--
Confidence            9999999999999999999999999999999999999999999887755444322  111122233566666666543  


Q ss_pred             hhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         200 PKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       200 ~~~~~~~~~~~~~l~~-~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                        +.....+.+.+++. .|.++..++..+...+.+ .++...+.+++..+++++.+++.|+++.+++|.++++++..
T Consensus       242 --~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~  316 (319)
T 2chq_A          242 --NFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL  316 (319)
T ss_dssp             --CHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred             --CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence              33444555666766 899999999888777654 47888899999999999999999999999999999998754

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=5.7e-34  Score=247.79  Aligned_cols=270  Identities=30%  Similarity=0.488  Sum_probs=228.1

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .+|++||+|.+|++++|+..+++.+...+..|..||++|+||+|+||||+++++++.+.+.                   
T Consensus        13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   92 (327)
T 1iqp_A           13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV   92 (327)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT
T ss_pred             CchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH
Confidence            4899999999999999999999999999999998899999999999999999998874211                   


Q ss_pred             --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281          63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE  122 (287)
Q Consensus        63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~  122 (287)
                                          ++++||++.++...++.|++.++.++.++.++++++..+.+.+++++||..+.|++++.+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~  172 (327)
T 1iqp_A           93 IREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE  172 (327)
T ss_dssp             THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHH
T ss_pred             HHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHH
Confidence                                899999999999999999999999888889999999888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCccccc--CccCccHHHHHHHHHHHHHhccCh
Q psy2281         123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ--QIVEPDWKIYIRDTAKLIISEQSP  200 (287)
Q Consensus       123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d--~~~~~~~~~~i~~l~~~i~~~~~~  200 (287)
                      ++..++..+++..|+.+++++.+.+++.++|++|.+++.++.+....+.++..+  ..........++++.+.++.. +.
T Consensus       173 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~~~~~~~~~i~~l~~~~~~~-~~  251 (327)
T 1iqp_A          173 DIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARPEDIREMMLLALKG-NF  251 (327)
T ss_dssp             HHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHHTTCCCHHHHHHHHHHHHHT-CH
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHHcC-CH
Confidence            999999999999998889999999999999999999999998876654433222  111122234556666655443 33


Q ss_pred             hHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHH
Q psy2281         201 KKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMY  275 (287)
Q Consensus       201 ~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~  275 (287)
                         ....+.+.+++ ..|.++..++..+...+.+ .++...+..++..+++++.+++.|+++.+++|.++++++...
T Consensus       252 ---~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~~  325 (327)
T 1iqp_A          252 ---LKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLIG  325 (327)
T ss_dssp             ---HHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhh
Confidence               33444556666 7799999999988877765 588899999999999999999999999999999999987653

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=1.2e-33  Score=248.42  Aligned_cols=268  Identities=27%  Similarity=0.446  Sum_probs=223.1

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--------------------   61 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--------------------   61 (287)
                      .+|++||||++|++++|+.++++.+...+..|..+|++|+||||+||||+++++++.+.+                    
T Consensus        25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~  104 (353)
T 1sxj_D           25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS  104 (353)
T ss_dssp             -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH
T ss_pred             ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH
Confidence            389999999999999999999999999999998888999999999999999999877421                    


Q ss_pred             ----------------------------C--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhccc
Q psy2281          62 ----------------------------P--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRC  111 (287)
Q Consensus        62 ----------------------------~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~  111 (287)
                                                  .  ++++||++.++...++.|++.++.++++.+++++++....+.+++++||
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~  184 (353)
T 1sxj_D          105 IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC  184 (353)
T ss_dssp             HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred             HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence                                        0  7889999999999999999999998888899999998889999999999


Q ss_pred             ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC------CcccccC--ccCccH
Q psy2281         112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY------PFQIDQQ--IVEPDW  183 (287)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de------p~~~~d~--~~~~~~  183 (287)
                      ..+.|.+++.+++..++..++...++.+++++.+.++++++|++|.+++.++.+....+      .++..+.  ......
T Consensus       185 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~~~~  264 (353)
T 1sxj_D          185 SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVP  264 (353)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred             ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999998776532      2222110  000111


Q ss_pred             HHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHhhHHhcCCChH
Q psy2281         184 KIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--NCDSDLKSKSIEMAAMFEHRIHKGSKPI  261 (287)
Q Consensus       184 ~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~~~  261 (287)
                      .+.+.++.+.+...    +.......+.+++..|.++..++..+..++..  .++...+..++..+++.+.+++.|.++.
T Consensus       265 ~~~~~~l~~~~~~~----~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~  340 (353)
T 1sxj_D          265 HDILIEIVEKVKSG----DFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEH  340 (353)
T ss_dssp             SHHHHHHHHHHHSC----CHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCChH
Confidence            12344454444322    23444455667788899999999988888765  5788899999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2281         262 FHIEAYVASFMA  273 (287)
Q Consensus       262 ~~l~~~i~~~~~  273 (287)
                      ++++.++++++.
T Consensus       341 l~l~~~~~~~~~  352 (353)
T 1sxj_D          341 IQLLNLLVKISQ  352 (353)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999864

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=100.00  E-value=1.2e-31  Score=232.63  Aligned_cols=265  Identities=23%  Similarity=0.347  Sum_probs=219.5

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .+|.+||+|..+++++|+...++.+...+..+..||++|+||+|+||||+++++++.+.+.                   
T Consensus         9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~   88 (323)
T 1sxj_B            9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV   88 (323)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH
T ss_pred             CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHH
Confidence            3899999999999999999999999999999998899999999999999999998764110                   


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCH
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH  121 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~  121 (287)
                                           +++|||++.++...++.|++.++.++.++.++++++..+.+.++++|||..+.|++++.
T Consensus        89 i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~  168 (323)
T 1sxj_B           89 VRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD  168 (323)
T ss_dssp             HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred             HHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCH
Confidence                                 89999999999999999999999988889999999988899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHH----HHHHHHHhc
Q psy2281         122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIR----DTAKLIISE  197 (287)
Q Consensus       122 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~----~l~~~i~~~  197 (287)
                      +++.+++...++..|+.+++++.+.+++.++|+.|++++.++.+....+.++.      ..+.+.+.    .-..+++..
T Consensus       169 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~------~~v~~~~~~~~~~~i~~~~~~  242 (323)
T 1sxj_B          169 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNA------DNVFKIVDSPHPLIVKKMLLA  242 (323)
T ss_dssp             HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCH------HHHHHHHTSCCHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCH------HHHHHHHCCCCHHHHHHHHhc
Confidence            99999999999999998999999999999999999999999988754332221      11111111    011112222


Q ss_pred             cChhHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHH-h-CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         198 QSPKKLLEVRTRLYE-LLVHSIPVNVLFKYLLEGLLA-N-CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       198 ~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                         .+...+...+.. ++..|.++..+...+..++.+ . ++...+..+++.+.+.+.+++.|.++.+++|.++.+++..
T Consensus       243 ---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~  319 (323)
T 1sxj_B          243 ---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKL  319 (323)
T ss_dssp             ---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhh
Confidence               334445555565 777899999998887765544 1 7888999999999999999999999999999999998765


Q ss_pred             H
Q psy2281         275 Y  275 (287)
Q Consensus       275 ~  275 (287)
                      .
T Consensus       320 ~  320 (323)
T 1sxj_B          320 N  320 (323)
T ss_dssp             T
T ss_pred             c
Confidence            3

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.97  E-value=2.4e-28  Score=216.16  Aligned_cols=268  Identities=19%  Similarity=0.212  Sum_probs=210.0

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------   61 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------   61 (287)
                      .+|.+||||++|++++|+....+.+...+..|..+| ++|+||+|+||||+++++++.+.+                   
T Consensus         4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~   83 (373)
T 1jr3_A            4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE   83 (373)
T ss_dssp             CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred             HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence            579999999999999999999999999999999888 899999999999999999987632                   


Q ss_pred             -----C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          62 -----P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        62 -----~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                           +                                +++|||+|.++...++.|++.++.++.++.++++++..+.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~  163 (373)
T 1jr3_A           84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  163 (373)
T ss_dssp             TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred             ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence                 0                                899999999999999999999999888889999999888899


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC-Cccccc--CccCc
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY-PFQIDQ--QIVEP  181 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de-p~~~~d--~~~~~  181 (287)
                      +++++||..+.|++++.+++..++...++..|+.+++++.+.+++.++|+.|.+.+.++++..+.. +++..+  .....
T Consensus       164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~~~  243 (373)
T 1jr3_A          164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT  243 (373)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHTTC
T ss_pred             HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999988776532 222211  00111


Q ss_pred             cHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---------------------------HHh
Q psy2281         182 DWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGL---------------------------LAN  234 (287)
Q Consensus       182 ~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~---------------------------~~~  234 (287)
                      .....+.++.+.+... +...+   ...+..+...|.++..++..+..++                           .+.
T Consensus       244 ~~~~~~~~l~~~~~~~-~~~~~---~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~a~~  319 (373)
T 1jr3_A          244 LDDDQALSLVEAMVEA-NGERV---MALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART  319 (373)
T ss_dssp             CCHHHHHHHHHHHHHT-CHHHH---HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcC-CHHHH---HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHHHHHHHh
Confidence            1123344555554433 22222   2233344455666655444333222                           223


Q ss_pred             CChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         235 CDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      ++......++..+.+.+.+++.+.++.+.+|.++.++..
T Consensus       320 ~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~  358 (373)
T 1jr3_A          320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA  358 (373)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence            555667778888999999999999999999999988754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.97  E-value=2.9e-30  Score=232.68  Aligned_cols=251  Identities=18%  Similarity=0.228  Sum_probs=188.0

Q ss_pred             CccccccCCCCCCCccCcHHHH---HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQA---NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~---~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      .+|+++|||++|++++|+.+++   ..+...+..|..++++|+|||||||||+++++++.....                
T Consensus        14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~   93 (447)
T 3pvs_A           14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIRE   93 (447)
T ss_dssp             CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHH
T ss_pred             CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHH
Confidence            4899999999999999999998   889999999998889999999999999999999987543                


Q ss_pred             ---------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC--CCCcHHHhcccceeecCCCCHHHHH
Q psy2281          63 ---------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM--SQVIPAIRSRCLCIRIPAPTHEEIV  125 (287)
Q Consensus        63 ---------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~--~~l~~~l~sr~~~~~~~~~~~~~~~  125 (287)
                                     +++|||++.++...++.|++.++.  ....+|.+++..  ..+.+++.|||.++.|.+++.+++.
T Consensus        94 ~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~  171 (447)
T 3pvs_A           94 AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIE  171 (447)
T ss_dssp             HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHH
T ss_pred             HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHH
Confidence                           999999999999889999999996  345666666543  3688999999999999999999999


Q ss_pred             HHHHHHHHH-------hCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc-cccCccCccHHHHHHHHHHHHHhc
Q psy2281         126 SVLTNICKK-------EGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ-IDQQIVEPDWKIYIRDTAKLIISE  197 (287)
Q Consensus       126 ~~l~~~~~~-------~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~-~~d~~~~~~~~~~i~~l~~~i~~~  197 (287)
                      .++...+..       .++.+++++.+.+++.++||+|++++.++.+........ +...++    .+.+.++    +..
T Consensus       172 ~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It----~e~v~~~----l~~  243 (447)
T 3pvs_A          172 QVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK----PELLTEI----AGE  243 (447)
T ss_dssp             HHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECC----HHHHHHH----HTC
T ss_pred             HHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccC----HHHHHHH----Hhh
Confidence            999999987       556689999999999999999999999999887654210 111111    1222222    221


Q ss_pred             cChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHH
Q psy2281         198 QSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQ  277 (287)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~  277 (287)
                       ......+-.+.+|++++              .+.+.+    +....+.+.+|..+|..++.++.    ++++.+.++++
T Consensus       244 -~~~~~dk~gd~~yd~is--------------al~ksi----rgsd~daAl~~la~ml~~Gedp~----~i~rrl~~~a~  300 (447)
T 3pvs_A          244 -RSARFDNKGDRFYDLIS--------------ALHKSV----RGSAPDAALYWYARIITAGGDPL----YVARRCLAIAS  300 (447)
T ss_dssp             -CCCC---CCHHHHHHHH--------------HHHHHH----HTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHH
T ss_pred             -hhhccCCccchHHHHHH--------------HHHHHH----hCCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHH
Confidence             11112222333444332              133333    34445567788889999998887    89999999999


Q ss_pred             HHHhhhhc
Q psy2281         278 FMEDTLSN  285 (287)
Q Consensus       278 ~~~~~~~~  285 (287)
                      +|||+||.
T Consensus       301 edig~a~p  308 (447)
T 3pvs_A          301 EDVGNADP  308 (447)
T ss_dssp             HTTGGGCT
T ss_pred             hcccCCCh
Confidence            99999984

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.94  E-value=5.3e-26  Score=195.24  Aligned_cols=239  Identities=12%  Similarity=0.144  Sum_probs=181.7

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh------CCC-----------------------------
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL------YGP-----------------------------   62 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~------~~~-----------------------------   62 (287)
                      ||+++++.|+..+++|+.|+++|+||+|+||||+++++++..      .++                             
T Consensus         1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~   80 (305)
T 2gno_A            1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL   80 (305)
T ss_dssp             ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSS
T ss_pred             ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcccc
Confidence            577888999999999985569999999999999999998852      111                             


Q ss_pred             ----EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC
Q psy2281          63 ----VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT  138 (287)
Q Consensus        63 ----~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~  138 (287)
                          +++|||+|.++..++++|++++|.+++++.|+++++.++++.++++||  +++|++++.+++.+++.+.+   ++ 
T Consensus        81 ~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~~~~---~i-  154 (305)
T 2gno_A           81 YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVKEKI---GD-  154 (305)
T ss_dssp             SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHHHHH---TT-
T ss_pred             CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHHHHh---CC-
Confidence                999999999999999999999999999999999999999999999999  89999999999999999887   44 


Q ss_pred             CCHHHHHHHHHHcCCcHHHHHHHHHHHh-----------hcCCCcccccCccCccHHH--HHHHHHHHHHhccChhHHHH
Q psy2281         139 IPPEFALRLAQQSDRNLRRAILMCEASK-----------VQQYPFQIDQQIVEPDWKI--YIRDTAKLIISEQSPKKLLE  205 (287)
Q Consensus       139 ~~~~~~~~l~~~s~G~~r~al~~l~~~~-----------~~dep~~~~d~~~~~~~~~--~i~~l~~~i~~~~~~~~~~~  205 (287)
                       +++++    .++.|++|+|++.++...           .+. .-...+........+  .++++.+.+... +...+. 
T Consensus       155 -~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~~~~~~~~v~~l~~ai~~~-~~~~a~-  226 (305)
T 2gno_A          155 -LWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLE-TEKLLKKVLSKGLEGYLACRELLERFSKV-ESKEFF-  226 (305)
T ss_dssp             -HHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSC-HHHHTTTTTCSHHHHHHHHHHHHHHHHHS-CGGGHH-
T ss_pred             -CHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHccCCcchHHHHHHHHHHHCC-CHHHHH-
Confidence             55544    668999999988775211           111 001112222233333  578888887665 333333 


Q ss_pred             HHHHHHHHHh--cCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhc---CCChHHHHHHHHHHHHH
Q psy2281         206 VRTRLYELLV--HSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHK---GSKPIFHIEAYVASFMA  273 (287)
Q Consensus       206 ~~~~~~~l~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---g~~~~~~l~~~i~~~~~  273 (287)
                        +.+.+++.  .|.++..++..++..+... ....+...++.++..+.++..   |.++.+||+.++++++.
T Consensus       227 --~~~~~l~~~~~g~~~~~~i~~~~r~l~~~-~~~~~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~  296 (305)
T 2gno_A          227 --ALFDQVTNTITGKDAFLLIQRLTRIILHE-NTWESVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHRE  296 (305)
T ss_dssp             --HHHHHHHHHSCTHHHHHHHHHHHHHHHHT-SCCCSHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHhhcCCCHHHHHHHHHHHHHhh-chhhhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence              33344554  7888877777777766642 233346777899999999999   99999999999999874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.93  E-value=5.6e-25  Score=180.16  Aligned_cols=169  Identities=37%  Similarity=0.654  Sum_probs=154.3

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      +.+|.++|+|..+++++|+....+.+...+..+..++++|+||+|+|||++++.+++.+...                  
T Consensus         4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (226)
T 2chg_A            4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGID   83 (226)
T ss_dssp             CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHH
T ss_pred             hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChH
Confidence            46899999999999999999999999999988877779999999999999999998864110                  


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCH
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH  121 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~  121 (287)
                                           +++|||++.+....++.+++.++....+..++++++..+.+.+++.+|+..+.|++++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~  163 (226)
T 2chg_A           84 VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPK  163 (226)
T ss_dssp             HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred             HHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCH
Confidence                                 89999999999888899999999887788899999888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q psy2281         122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ  169 (287)
Q Consensus       122 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d  169 (287)
                      ++...++...+...++.+++++.+.+++.++|+.|.+++.++.+....
T Consensus       164 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~  211 (226)
T 2chg_A          164 EAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG  211 (226)
T ss_dssp             HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Confidence            999999999999999988999999999999999999999999988765

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.93  E-value=1.7e-23  Score=182.56  Aligned_cols=238  Identities=17%  Similarity=0.171  Sum_probs=178.0

Q ss_pred             cHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-----------------------------------C
Q psy2281          19 HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-----------------------------------P   62 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-----------------------------------~   62 (287)
                      +.+..+.+...+++|+.|| ++|+||+|+|||++++++++.+.+                                   .
T Consensus         7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~   86 (334)
T 1a5t_A            7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKN   86 (334)
T ss_dssp             GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCS
T ss_pred             hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCC
Confidence            5677888999999999999 999999999999999999987531                                   1


Q ss_pred             ------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCC
Q psy2281          63 ------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPA  118 (287)
Q Consensus        63 ------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~  118 (287)
                                              +++|||+|.++.+++++|+++++.++.++.++++++..+++.++++|||+.+.|++
T Consensus        87 ~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~  166 (334)
T 1a5t_A           87 TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAP  166 (334)
T ss_dssp             SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCC
Confidence                                    99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcccccCccCccHHHHHHHHH-------
Q psy2281         119 PTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTA-------  191 (287)
Q Consensus       119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~-------  191 (287)
                      ++.+++.+++...+     .+++++.+.+++.++|++|+|++.++.......          ..+.+.+..+.       
T Consensus       167 ~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~  231 (334)
T 1a5t_A          167 PPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQAR----------ETLCQALAYSVPSGDWYS  231 (334)
T ss_dssp             CCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHH----------HHHHHHHHHHHHHCCCGG
T ss_pred             CCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHH----------HHHHHHHHHHHhChHHHH
Confidence            99999999988764     458899999999999999999988876442110          01111111111       


Q ss_pred             --HHHHhccChhHH-HHHHHHHHHHHhcC------CCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHh--cCCCh
Q psy2281         192 --KLIISEQSPKKL-LEVRTRLYELLVHS------IPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIH--KGSKP  260 (287)
Q Consensus       192 --~~i~~~~~~~~~-~~~~~~~~~l~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~g~~~  260 (287)
                        +.+ ...+...+ ..+...+.+++..+      +.++. . .......+.++...+..+++.+.+.+.+++  .+.++
T Consensus       232 ~~~~l-~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~-~-~~~~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~~~n~  308 (334)
T 1a5t_A          232 LLAAL-NHEQAPARLHWLATLLMDALKRHHGAAQVTNVDV-P-GLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINR  308 (334)
T ss_dssp             GHHHH-CSTTHHHHHHHHHHHHHHHTCC------CCCTTC-H-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCSSH
T ss_pred             HHHHH-hcccHHHHHHHHHHHHHHHHHhccCCccccCHHH-H-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCH
Confidence              111 11111111 22222223333221      11211 1 222334457888889999999999999999  89999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2281         261 IFHIEAYVASFMAM  274 (287)
Q Consensus       261 ~~~l~~~i~~~~~~  274 (287)
                      .+++|.++.++...
T Consensus       309 ~l~le~ll~~l~~~  322 (334)
T 1a5t_A          309 ELLITDLLLRIEHY  322 (334)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.91  E-value=3.6e-24  Score=197.09  Aligned_cols=171  Identities=28%  Similarity=0.410  Sum_probs=141.7

Q ss_pred             CCccccccCCCCCCCccCcHHHHHHHHHHHhc-----------------CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-
Q psy2281           1 MSLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------------GDFPHLLFYGPSGAGKKTRIMALLKELYGP-   62 (287)
Q Consensus         1 m~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------------g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-   62 (287)
                      |.+|++||||++|++++|+...++.+..++..                 +..++++|+||+|+||||+++++++.+... 
T Consensus        26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~  105 (516)
T 1sxj_A           26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDI  105 (516)
T ss_dssp             CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEE
T ss_pred             CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence            46899999999999999999999999888854                 122349999999999999999999865211 


Q ss_pred             ---------------------------------------------EEEEeCCCCCCHHHH---HHHHHHHHhccCCcEEE
Q psy2281          63 ---------------------------------------------VIILNETDHLTREAQ---QALRRTMEKYITTCRLI   94 (287)
Q Consensus        63 ---------------------------------------------~i~ide~d~l~~~~~---~~l~~~i~~~~~~~~~i   94 (287)
                                                                   +++|||+|.+....+   ..+.+.++..  ...++
T Consensus       106 i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iI  183 (516)
T 1sxj_A          106 LEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLI  183 (516)
T ss_dssp             EEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEE
T ss_pred             EEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEE
Confidence                                                         789999998876433   6677777653  45577


Q ss_pred             EEeCCCC-CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc
Q psy2281          95 LCANSMS-QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ  173 (287)
Q Consensus        95 ~~~~~~~-~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~  173 (287)
                      ++++... ...+++++||..+.|++++.+++.+++..++..+++.+++++++.+++.++||+|++++.++.+.....+++
T Consensus       184 li~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~~~~~~~It  263 (516)
T 1sxj_A          184 LICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTIN  263 (516)
T ss_dssp             EEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCC
T ss_pred             EEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCc
Confidence            7777654 455678999999999999999999999999999999999999999999999999999999998877555443

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.91  E-value=6.4e-23  Score=169.96  Aligned_cols=168  Identities=26%  Similarity=0.351  Sum_probs=151.8

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYG-------------------   61 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~-------------------   61 (287)
                      .+|.++|+|..+++++|+....+.+...+..+..++ ++|+||+|+||||+++.+++.+..                   
T Consensus        11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (250)
T 1njg_A           11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE   90 (250)
T ss_dssp             CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred             HHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence            479999999999999999999999999998888766 899999999999999999876521                   


Q ss_pred             -----C--------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCc
Q psy2281          62 -----P--------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVI  104 (287)
Q Consensus        62 -----~--------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~  104 (287)
                           .                                ++++||++.+....++.+.+.++..+....++++++..+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~  170 (250)
T 1njg_A           91 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP  170 (250)
T ss_dssp             TTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred             ccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence                 0                                899999999998889999999998777788899988888899


Q ss_pred             HHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q psy2281         105 PAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ  169 (287)
Q Consensus       105 ~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d  169 (287)
                      +++.+|+..+.+++++.+++.+++...+...+..++++..+.+++.++|+.|.+.+.++.++...
T Consensus       171 ~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~  235 (250)
T 1njg_A          171 VTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG  235 (250)
T ss_dssp             HHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999989888999999999999999999999998887554

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.87  E-value=7.3e-21  Score=166.11  Aligned_cols=164  Identities=21%  Similarity=0.301  Sum_probs=138.4

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhc-----CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----GDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      .|.+||+|.+|++++|+......+..++..     ...++++|+||+|||||++++++++....+               
T Consensus        18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   97 (338)
T 3pfi_A           18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDL   97 (338)
T ss_dssp             -----CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHH
T ss_pred             hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHH
Confidence            699999999999999999998888888753     333459999999999999999999887543               


Q ss_pred             -----------EEEEeCCCCCCHHHHHHHHHHHHhccC------------------CcEEEEEeCCCCCCcHHHhccc-c
Q psy2281          63 -----------VIILNETDHLTREAQQALRRTMEKYIT------------------TCRLILCANSMSQVIPAIRSRC-L  112 (287)
Q Consensus        63 -----------~i~ide~d~l~~~~~~~l~~~i~~~~~------------------~~~~i~~~~~~~~l~~~l~sr~-~  112 (287)
                                 ++++||++.+....+..|++.++...-                  ...++.++|....+.+++++|| .
T Consensus        98 ~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~  177 (338)
T 3pfi_A           98 AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGM  177 (338)
T ss_dssp             HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSE
T ss_pred             HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCE
Confidence                       899999999999999999988876321                  2467777887788999999999 6


Q ss_pred             eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      .+.|++++.+++..++...+...++.+++++.+.+++.++|+.|.+.+.++.+.
T Consensus       178 ~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~  231 (338)
T 3pfi_A          178 QFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVR  231 (338)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred             EeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            899999999999999999999999888999999999999999999998888754

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=99.87  E-value=1.6e-21  Score=170.66  Aligned_cols=242  Identities=14%  Similarity=0.134  Sum_probs=174.4

Q ss_pred             HHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhC--C--C-----------------------------EEEEeCCCC
Q psy2281          26 LRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELY--G--P-----------------------------VIILNETDH   71 (287)
Q Consensus        26 l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~--~--~-----------------------------~i~ide~d~   71 (287)
                      +...++ ++.+| ++|+||+|+||++.++.+++.+.  +  +                             +|+|||++.
T Consensus         9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~   87 (343)
T 1jr3_D            9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPEN   87 (343)
T ss_dssp             HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred             HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence            334445 45666 99999999999999999877542  1  0                             999999999


Q ss_pred             -CCHHHHHHHHHHHHhccCCcEEEEEeCCC------CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q psy2281          72 -LTREAQQALRRTMEKYITTCRLILCANSM------SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA  144 (287)
Q Consensus        72 -l~~~~~~~l~~~i~~~~~~~~~i~~~~~~------~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  144 (287)
                       ++.+.+++|+++++.+++++.++++++..      .++.++++|||.++.|.+++.+++..++..+++.+|+.+++++.
T Consensus        88 kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~  167 (343)
T 1jr3_D           88 GPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAAN  167 (343)
T ss_dssp             CCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCEECHHHH
T ss_pred             CCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence             88888999999999999999999988764      34888999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcHHHHHHHHHHHhhcC--CCccccc------CccCccHHHHHHHHHHHHHhc----------------cCh
Q psy2281         145 LRLAQQSDRNLRRAILMCEASKVQQ--YPFQIDQ------QIVEPDWKIYIRDTAKLIISE----------------QSP  200 (287)
Q Consensus       145 ~~l~~~s~G~~r~al~~l~~~~~~d--ep~~~~d------~~~~~~~~~~i~~l~~~i~~~----------------~~~  200 (287)
                      +.+++.++||++.+.+.++++.++.  ++++..+      ......    ++++.+.+...                .++
T Consensus       168 ~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~----if~l~~ai~~~d~~~al~~l~~l~~~g~~~  243 (343)
T 1jr3_D          168 QVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFT----PFHWVDALLMGKSKRALHILQQLRLEGSEP  243 (343)
T ss_dssp             HHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCC----HHHHHHHHTTSCHHHHHHHHTSSTTTTCCH
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCC----HHHHHHHHHCCCHHHHHHHHHHHHHCCCcH
Confidence            9999999999999999999998863  3333222      011122    23333332221                111


Q ss_pred             hHHH-HHHHHHHHHH--h----cCCCHHHHHHH---------HHHHHHHhCChHHHHHHHHHHHHHhhHHhcCC--ChHH
Q psy2281         201 KKLL-EVRTRLYELL--V----HSIPVNVLFKY---------LLEGLLANCDSDLKSKSIEMAAMFEHRIHKGS--KPIF  262 (287)
Q Consensus       201 ~~~~-~~~~~~~~l~--~----~~~~~~~i~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~~~~  262 (287)
                      ..+. .+...+..++  .    .| ++..+.+.         ......+.++......++..+.+.+.+++.|.  ++++
T Consensus       244 ~~il~~l~~~~r~l~~~~~~~~~g-~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~~  322 (343)
T 1jr3_D          244 VILLRTLQRELLLLVNLKRQSAHT-PLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWA  322 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSSS-CHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence            1111 1111122221  1    23 44444432         11222346777888899999999999999874  5678


Q ss_pred             HHHHHHHHHHH
Q psy2281         263 HIEAYVASFMA  273 (287)
Q Consensus       263 ~l~~~i~~~~~  273 (287)
                      .||.++.+++.
T Consensus       323 ~le~l~l~l~~  333 (343)
T 1jr3_D          323 ELEGLSLLLCH  333 (343)
T ss_dssp             HHHHHHHHTTS
T ss_pred             HHHHHHHHHcC
Confidence            99999988753

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.86  E-value=1.6e-20  Score=163.65  Aligned_cols=164  Identities=21%  Similarity=0.270  Sum_probs=135.3

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhcC----CC-CcEEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEG----DF-PHLLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g----~~-~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      |+++++|++|++++|+..+++.++..+..|    +. .+++|+||||+||||+++++++.+...                
T Consensus        15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~   94 (334)
T 1in4_A           15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA   94 (334)
T ss_dssp             --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH
T ss_pred             HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH
Confidence            499999999999999999999998888654    22 349999999999999999999987321                


Q ss_pred             ----------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhcccc-e
Q psy2281          63 ----------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRCL-C  113 (287)
Q Consensus        63 ----------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~~-~  113 (287)
                                ++++||++.+....++.+...++...                  +...++..++....+..++++||. .
T Consensus        95 ~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~  174 (334)
T 1in4_A           95 AILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGII  174 (334)
T ss_dssp             HHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEE
T ss_pred             HHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCce
Confidence                      89999999998877777766665421                  123455566667789999999996 5


Q ss_pred             eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhh
Q psy2281         114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKV  167 (287)
Q Consensus       114 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~  167 (287)
                      +.|.+++.+++.+++++.++..++.+++++...+++.+.|+.|.+++.+..+..
T Consensus       175 ~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~  228 (334)
T 1in4_A          175 LELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRD  228 (334)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             eeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence            789999999999999999998999999999999999999999999998886643

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.85  E-value=8.8e-20  Score=158.17  Aligned_cols=167  Identities=23%  Similarity=0.315  Sum_probs=139.0

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhc----C-CCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE----G-DFPHLLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~----g-~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      +|.+||+|.+|++++|+......+...+..    + ..++++|+||+|+|||++++++++....+               
T Consensus         1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l   80 (324)
T 1hqc_A            1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDL   80 (324)
T ss_dssp             ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHH
T ss_pred             CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHH
Confidence            478999999999999999888877777642    2 22349999999999999999998876432               


Q ss_pred             ------------EEEEeCCCCCCHHHHHHHHHHHHhcc------------------CCcEEEEEeCCCCCCcHHHhccc-
Q psy2281          63 ------------VIILNETDHLTREAQQALRRTMEKYI------------------TTCRLILCANSMSQVIPAIRSRC-  111 (287)
Q Consensus        63 ------------~i~ide~d~l~~~~~~~l~~~i~~~~------------------~~~~~i~~~~~~~~l~~~l~sr~-  111 (287)
                                  ++++||++.+....+..+++.++...                  .+..++.+++....+.+++.+|| 
T Consensus        81 ~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~  160 (324)
T 1hqc_A           81 AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFG  160 (324)
T ss_dssp             HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCS
T ss_pred             HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhccc
Confidence                        99999999999988998988888642                  23567888888888889999999 


Q ss_pred             ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcC
Q psy2281         112 LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQ  169 (287)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~d  169 (287)
                      .++.+.+++.+++..++...+...++.+++++.+.+++.++|+.|.+.+.+..+....
T Consensus       161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a  218 (324)
T 1hqc_A          161 IVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFA  218 (324)
T ss_dssp             CEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            5899999999999999999999889889999999999999999999998888776543

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.85  E-value=3.8e-20  Score=163.33  Aligned_cols=164  Identities=21%  Similarity=0.292  Sum_probs=138.6

Q ss_pred             cccccCCCC-CCCccCcHHHHHH---HHHHHhcCCCC--cEEEeCCCCCcHHHHHHHHHHHhCC----------------
Q psy2281           4 WVDKYRPNN-LQKLDFHCKQANH---LRNLLKEGDFP--HLLFYGPSGAGKKTRIMALLKELYG----------------   61 (287)
Q Consensus         4 w~~k~~p~~-~~~~~~~~~~~~~---l~~~~~~g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~----------------   61 (287)
                      +.++++|.. |++++|+......   +...+..|..+  +++|+||||+|||++++++++.+..                
T Consensus        33 l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~  112 (368)
T 3uk6_A           33 LDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE  112 (368)
T ss_dssp             BCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred             cccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence            567899999 9999999988665   45555667665  4999999999999999999987642                


Q ss_pred             ------------------------------------------------------------------------------CE
Q psy2281          62 ------------------------------------------------------------------------------PV   63 (287)
Q Consensus        62 ------------------------------------------------------------------------------~~   63 (287)
                                                                                                    .+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v  192 (368)
T 3uk6_A          113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV  192 (368)
T ss_dssp             SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred             cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence                                                                                          18


Q ss_pred             EEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeC------------CCCCCcHHHhcccceeecCCCCHHHHHHHHHHH
Q psy2281          64 IILNETDHLTREAQQALRRTMEKYITTCRLILCAN------------SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNI  131 (287)
Q Consensus        64 i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~------------~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~  131 (287)
                      ++|||++.+..+.++.|++.++..... .+++.++            ....+.+++++||..+.|++++.+++..++...
T Consensus       193 l~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~  271 (368)
T 3uk6_A          193 LFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIR  271 (368)
T ss_dssp             EEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHH
T ss_pred             EEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHH
Confidence            999999999999999999999876543 3444443            145688999999999999999999999999999


Q ss_pred             HHHhCCCCCHHHHHHHHHHcC-CcHHHHHHHHHHHhhc
Q psy2281         132 CKKEGLTIPPEFALRLAQQSD-RNLRRAILMCEASKVQ  168 (287)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~s~-G~~r~al~~l~~~~~~  168 (287)
                      +...++.+++++++.+++++. |+.|.+++.+..+...
T Consensus       272 ~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~  309 (368)
T 3uk6_A          272 CEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLV  309 (368)
T ss_dssp             HHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999998 9999999999887654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.83  E-value=1.8e-19  Score=149.25  Aligned_cols=166  Identities=16%  Similarity=0.226  Sum_probs=136.8

Q ss_pred             ccccccCC-CCCCCccC---cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----------------
Q psy2281           3 LWVDKYRP-NNLQKLDF---HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----------------   61 (287)
Q Consensus         3 ~w~~k~~p-~~~~~~~~---~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----------------   61 (287)
                      +|..+++| .+|+++++   +..+...+..+...+..++++|+||+|+||||+++++++....                 
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~   95 (242)
T 3bos_A           16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS   95 (242)
T ss_dssp             EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC
T ss_pred             CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            58889998 78999986   3477888888887655555999999999999999999887641                 


Q ss_pred             ----------CEEEEeCCCCCCHHH--HHHHHHHHHhccCCc--EEEEEeCCCC----CCcHHHhccc---ceeecCCCC
Q psy2281          62 ----------PVIILNETDHLTREA--QQALRRTMEKYITTC--RLILCANSMS----QVIPAIRSRC---LCIRIPAPT  120 (287)
Q Consensus        62 ----------~~i~ide~d~l~~~~--~~~l~~~i~~~~~~~--~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~~  120 (287)
                                .++++||++.+....  +..+...++......  .++++++...    .+.+.+.+||   ..+.|++++
T Consensus        96 ~~~~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~  175 (242)
T 3bos_A           96 TALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMM  175 (242)
T ss_dssp             GGGGTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCC
T ss_pred             HHHHHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCC
Confidence                      189999999886544  677777777654333  4777776543    3568999999   789999999


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281         121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus       121 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      .++..+++...++..++.+++++.+.+++.++|++|.+.+.++.+...
T Consensus       176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~  223 (242)
T 3bos_A          176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKA  223 (242)
T ss_dssp             GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999877654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.82  E-value=3.3e-23  Score=180.31  Aligned_cols=180  Identities=13%  Similarity=0.127  Sum_probs=145.1

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      ++.++..+++|++  +.|.||||||||||+++|++...++  .|.+++.+.  ++......+++.+++++|+..++...+
T Consensus        44 L~~vsl~i~~Gei--~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~T  121 (366)
T 3tui_C           44 LNNVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRT  121 (366)
T ss_dssp             EEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSC
T ss_pred             EEeeEEEEcCCCE--EEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCC
Confidence            3444555578999  9999999999999999999998876  788887653  344444455677888999877665556


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      +.+++..++.       +...+.++..+++.+.++..|+  ++...+++.++|+|+.||     |+...|+++++||||+
T Consensus       122 V~env~~~~~-------~~~~~~~~~~~~v~~lL~~vgL--~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs  192 (366)
T 3tui_C          122 VFGNVALPLE-------LDNTPKDEVKRRVTELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATS  192 (366)
T ss_dssp             HHHHHHHHHH-------HSCCCHHHHHHHHHHHHHHHTC--GGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTT
T ss_pred             HHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            6677766654       3455677888889999999998  555667788999999988     6777789999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.++     ++++|+.+.+..++|+++.|
T Consensus       193 ~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl  237 (366)
T 3tui_C          193 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVI  237 (366)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            99999999999999999765     78999999999999988744

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.82  E-value=4.3e-19  Score=160.89  Aligned_cols=104  Identities=20%  Similarity=0.293  Sum_probs=93.4

Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe---------CC----CCCCcHHHhcccceeecCCCCHHHHHHHHH
Q psy2281          63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCA---------NS----MSQVIPAIRSRCLCIRIPAPTHEEIVSVLT  129 (287)
Q Consensus        63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~---------~~----~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~  129 (287)
                      +++|||++.++.+++++|++.++.++.. .+++.+         +.    +..+.++++|||..+.|++++.+++.+++.
T Consensus       298 VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~  376 (456)
T 2c9o_A          298 VLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK  376 (456)
T ss_dssp             EEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred             EEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence            5789999999999999999999998877 577677         44    567999999999999999999999999999


Q ss_pred             HHHHHhCCCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhh
Q psy2281         130 NICKKEGLTIPPEFALRLAQQS-DRNLRRAILMCEASKV  167 (287)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~  167 (287)
                      ..++.+++.+++++...++.++ .|+.|.|+..++....
T Consensus       377 ~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~  415 (456)
T 2c9o_A          377 IRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANL  415 (456)
T ss_dssp             HHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999 9999999999987643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.80  E-value=1.1e-22  Score=178.06  Aligned_cols=176  Identities=14%  Similarity=0.174  Sum_probs=141.7

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|++  +.|.||||||||||+++|++...++  .|.+++.+.......   .+.+++++|+..+++..++.+
T Consensus        20 ~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~---~r~ig~VfQ~~~l~p~ltV~e   94 (381)
T 3rlf_A           20 KDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA---ERGVGMVFQSYALYPHLSVAE   94 (381)
T ss_dssp             EEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG---GSCEEEECTTCCCCTTSCHHH
T ss_pred             eeeEEEECCCCE--EEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH---HCCEEEEecCCcCCCCCCHHH
Confidence            344445578998  9999999999999999999998876  788887653211111   244778888877766667778


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                      |+..+++       ....+.++..+.+.++++..++  ++...+++.++|+|+.||     |+...|+++++|||++++|
T Consensus        95 ni~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD  165 (381)
T 3rlf_A           95 NMSFGLK-------LAGAKKEVINQRVNQVAEVLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD  165 (381)
T ss_dssp             HHTHHHH-------HTTCCHHHHHHHHHHHHHHTTC--GGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSC
T ss_pred             HHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCC
Confidence            8877765       3456778888899999999888  556667888999999988     7788899999999999999


Q ss_pred             CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         177 QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ......+.+.+.++.++     |+++|+.+.+..++|++..|
T Consensus       166 ~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl  207 (381)
T 3rlf_A          166 AALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVL  207 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence            99999999999998765     78999999999999988744

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.79  E-value=9.1e-22  Score=165.45  Aligned_cols=180  Identities=14%  Similarity=0.102  Sum_probs=134.5

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC------------CCHHHHHHHHHHHHhccC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH------------LTREAQQALRRTMEKYIT   89 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~------------l~~~~~~~l~~~i~~~~~   89 (287)
                      +.++..+++|++  ++|.||||||||||+++|++.+.+.  .|.+++.+.            .+......+++.+.+++|
T Consensus        23 ~~vsl~i~~Ge~--~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q  100 (262)
T 1b0u_A           23 KGVSLQARAGDV--ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ  100 (262)
T ss_dssp             EEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred             EeeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEec
Confidence            344445578888  9999999999999999999998766  788887553            222222345667888888


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      +..++...++.+++..+...      +...+.++..+.+.++++..|+  ++. ..+.+.++|+|+.||     |+...|
T Consensus       101 ~~~l~~~ltv~e~l~~~~~~------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~~LSgGq~qRv~lAraL~~~p  172 (262)
T 1b0u_A          101 HFNLWSHMTVLENVMEAPIQ------VLGLSKHDARERALKYLAKVGI--DERAQGKYPVHLSGGQQQRVSIARALAMEP  172 (262)
T ss_dssp             SCCCCTTSCHHHHHHHHHHH------TTCCCHHHHHHHHHHHHHHTTC--CHHHHTSCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             CcccCCCCcHHHHHHhhHHH------hcCCCHHHHHHHHHHHHHHcCC--CchhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence            76554434444555442210      2233455566778888888888  666 677888999999988     667778


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .++++|||++++|+.....+.+.+.++.++    ++++|+.+.+..++|+++.+
T Consensus       173 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (262)
T 1b0u_A          173 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFL  226 (262)
T ss_dssp             SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEE
T ss_pred             CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999999999999999888764    77999999999999887644

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.79  E-value=2.1e-22  Score=170.01  Aligned_cols=180  Identities=14%  Similarity=0.110  Sum_probs=138.8

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcE-EEEEeC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCR-LILCAN   98 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~-~i~~~~   98 (287)
                      ++.++..+++|++  ++|.||||||||||+++|++.+.+.  .|.+++.+.- .......+++.+++++|++. .++..+
T Consensus        24 L~~isl~i~~Ge~--~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~t  101 (275)
T 3gfo_A           24 LKGINMNIKRGEV--TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSAS  101 (275)
T ss_dssp             EEEEEEEEETTSE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSB
T ss_pred             EEeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCc
Confidence            3344455578999  9999999999999999999988766  7888886642 33334456677888888752 223345


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      +.+++..+..       ....+.++..+.+..+++..|+  ++...+.+.++|+|+.||     |+...|+++++|||++
T Consensus       102 v~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts  172 (275)
T 3gfo_A          102 VYQDVSFGAV-------NMKLPEDEIRKRVDNALKRTGI--EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTA  172 (275)
T ss_dssp             HHHHHHHHHH-------TSCCCHHHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred             HHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence            5566655443       2345677788888999999888  455567788999999988     6677789999999999


Q ss_pred             cccCccCccHHHHHHHHH-HH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTA-KL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~-~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++. +.    ++++|+.+.+..++|+++.+
T Consensus       173 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l  217 (275)
T 3gfo_A          173 GLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM  217 (275)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEE
T ss_pred             cCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            999999999999999987 43    78999999999999987644

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.78  E-value=6.9e-18  Score=150.06  Aligned_cols=162  Identities=17%  Similarity=0.221  Sum_probs=130.4

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhc-----------CC-CCcEEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GD-FPHLLFYGPSGAGKKTRIMALLKELYGP--------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------   62 (287)
                      .|+++|+|.+|++++|+..+++.+...+..           +. ..+++|+||+|||||+++++++.....+        
T Consensus       104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~  183 (389)
T 3vfd_A          104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAAS  183 (389)
T ss_dssp             TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCC
T ss_pred             hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHH
Confidence            599999999999999999999888887721           11 2349999999999999999999886533        


Q ss_pred             --------------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhcc----CCcEEEEEeCCCC
Q psy2281          63 --------------------------VIILNETDHLT-----------REAQQALRRTMEKYI----TTCRLILCANSMS  101 (287)
Q Consensus        63 --------------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~~----~~~~~i~~~~~~~  101 (287)
                                                +|+|||+|.+.           ...+..++..++...    ....+|.++|..+
T Consensus       184 l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~  263 (389)
T 3vfd_A          184 LTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQ  263 (389)
T ss_dssp             C-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGG
T ss_pred             hhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCch
Confidence                                      89999999873           233455666666432    2345667777778


Q ss_pred             CCcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q psy2281         102 QVIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA  164 (287)
Q Consensus       102 ~l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~  164 (287)
                      .+.+++++||. .+.|..|+.++...++...+...+..+++..+..++..+.|..++.+..+-.
T Consensus       264 ~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~  327 (389)
T 3vfd_A          264 ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAK  327 (389)
T ss_dssp             GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            89999999995 6889999999999999999999888889999999999999988776655543

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.78  E-value=2.7e-18  Score=154.80  Aligned_cols=161  Identities=18%  Similarity=0.252  Sum_probs=127.0

Q ss_pred             cCCC-CCCCcc-C--cHHHHHHHHHHHhcC-CCCcEEEeCCCCCcHHHHHHHHHHHh-----CC----------------
Q psy2281           8 YRPN-NLQKLD-F--HCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKEL-----YG----------------   61 (287)
Q Consensus         8 ~~p~-~~~~~~-~--~~~~~~~l~~~~~~g-~~~~~~l~Gp~G~GKTtl~~~l~~~~-----~~----------------   61 (287)
                      ..|. +|++++ |  +..+...+..+.... ..++++|+||||+||||+++++++.+     ..                
T Consensus        98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~  177 (440)
T 2z4s_A           98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVD  177 (440)
T ss_dssp             CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHH
T ss_pred             CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH
Confidence            3444 688877 4  444556666666543 34459999999999999999998866     11                


Q ss_pred             ------------------CEEEEeCCCCCCH--HHHHHHHHHHHhccC-CcEEEEEeCCCC----CCcHHHhccc---ce
Q psy2281          62 ------------------PVIILNETDHLTR--EAQQALRRTMEKYIT-TCRLILCANSMS----QVIPAIRSRC---LC  113 (287)
Q Consensus        62 ------------------~~i~ide~d~l~~--~~~~~l~~~i~~~~~-~~~~i~~~~~~~----~l~~~l~sr~---~~  113 (287)
                                        .+++|||++.+..  ..+..+...++.... ...++++++...    .+.++++|||   ..
T Consensus       178 ~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~  257 (440)
T 2z4s_A          178 SMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLV  257 (440)
T ss_dssp             HHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBC
T ss_pred             HHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeE
Confidence                              1899999998875  567888888776543 345666666543    3789999999   57


Q ss_pred             eecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281         114 IRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus       114 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      +.+.+|+.+++..++...++..++.+++++.++++..++|+.|.+.+.+..+...
T Consensus       258 i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~  312 (440)
T 2z4s_A          258 AKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVY  312 (440)
T ss_dssp             CBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999988877654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.77  E-value=7e-22  Score=165.89  Aligned_cols=180  Identities=16%  Similarity=0.129  Sum_probs=131.7

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC-CHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL-TREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l-~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      +.++..+++|++  ++|.||||||||||+++|++.+.+.  .|.+++.+.- .......+++.+.+++|+..++...++.
T Consensus        41 ~~vsl~i~~Gei--~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~  118 (263)
T 2olj_A           41 KGINVHIREGEV--VVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVL  118 (263)
T ss_dssp             EEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHH
T ss_pred             EeeEEEEcCCCE--EEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHH
Confidence            344444578888  9999999999999999999998766  7888875531 1111233456788888876544333444


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++..+..      .+...+.++..+.+.++++..++  ++...+.+.++|+|+.||     |+...|+++++|||++++
T Consensus       119 e~l~~~~~------~~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~L  190 (263)
T 2olj_A          119 NNITLAPM------KVRKWPREKAEAKAMELLDKVGL--KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSAL  190 (263)
T ss_dssp             HHHHHHHH------HTSCCCHHHHHHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred             HHHHHHHH------HHcCCCHHHHHHHHHHHHHHCCC--chHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccC
Confidence            55543221      02233455566777888888887  455566788999999888     666668899999999999


Q ss_pred             cCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |+.....+.+.+.++.++    ++++|+.+.+..++|+++.+
T Consensus       191 D~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  232 (263)
T 2olj_A          191 DPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM  232 (263)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            999999999999988764    77999999999988887644

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.77  E-value=8.4e-23  Score=177.69  Aligned_cols=180  Identities=13%  Similarity=0.117  Sum_probs=136.0

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE-AQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      ++.++..+++|++  +.|.||||||||||+++|++...++  .|.+++.+..... .....++.+++++|+..++...++
T Consensus        20 L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV   97 (359)
T 3fvq_A           20 LNDISLSLDPGEI--LFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTV   97 (359)
T ss_dssp             EEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCH
T ss_pred             EEeeEEEEcCCCE--EEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCH
Confidence            3344445578999  9999999999999999999998877  7888876531100 001123457778887766665666


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+|+..+++       ....+.++..+++.++++..++  ++...+++.++|+|+.||     |+...|+++++|||+++
T Consensus        98 ~eni~~~l~-------~~~~~~~~~~~~v~~~l~~~gL--~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~  168 (359)
T 3fvq_A           98 YRNIAYGLG-------NGKGRTAQERQRIEAMLELTGI--SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA  168 (359)
T ss_dssp             HHHHHTTST-------TSSCCSHHHHHHHHHHHHHHTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             HHHHHHHHH-------HcCCChHHHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            666655543       2234456677788888999888  566677889999999998     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     |+++|+.+.+..++|+++.|
T Consensus       169 LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl  212 (359)
T 3fvq_A          169 LDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVM  212 (359)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence            9999888888777777654     78999999999999988744

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.77  E-value=1.2e-17  Score=143.16  Aligned_cols=161  Identities=17%  Similarity=0.196  Sum_probs=127.9

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC-------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP-------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~-------   62 (287)
                      ..|.++++|.+|++++|+..+++.+...+..           +..+ +++|+|||||||||+++++++....+       
T Consensus         9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~   88 (297)
T 3b9p_A            9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAA   88 (297)
T ss_dssp             TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEEST
T ss_pred             HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHH
Confidence            4689999999999999999999888877622           1122 39999999999999999999887532       


Q ss_pred             ---------------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhccC-----CcEEEEEeCC
Q psy2281          63 ---------------------------VIILNETDHLT-----------REAQQALRRTMEKYIT-----TCRLILCANS   99 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~~~-----~~~~i~~~~~   99 (287)
                                                 ++++||+|.+.           ...+..++..++....     ...++.+++.
T Consensus        89 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~  168 (297)
T 3b9p_A           89 SLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNR  168 (297)
T ss_dssp             TTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESC
T ss_pred             HHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCC
Confidence                                       89999998763           2345566777776543     2456667777


Q ss_pred             CCCCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHH
Q psy2281         100 MSQVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC  162 (287)
Q Consensus       100 ~~~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l  162 (287)
                      ++.+.+++++|| ..+.++.|+.++...++...++..+..+++...+.+++.+.|..++.+..+
T Consensus       169 ~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l  232 (297)
T 3b9p_A          169 PQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTAL  232 (297)
T ss_dssp             GGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             hhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence            778999999999 467888899999999999999888888899999999999999777655433

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.77  E-value=9.4e-22  Score=172.33  Aligned_cols=176  Identities=16%  Similarity=0.177  Sum_probs=131.1

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|++  +.|.||||||||||+++|++...++  .|.+|+.+......   ..+.+++++|+..++...++.+
T Consensus        28 ~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~~~ltv~e  102 (372)
T 1v43_A           28 NKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---KDRNISMVFQSYAVWPHMTVYE  102 (372)
T ss_dssp             EEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGGTEEEEEC------CCCHHH
T ss_pred             eeeEEEECCCCE--EEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh---hhCcEEEEecCcccCCCCCHHH
Confidence            334444578888  9999999999999999999998776  78888755311110   1245778888877776667767


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                      ++..+++       ....+.++..+.+.++++..++  ++...+++.++|+|+.||     |+...|+++++|||++++|
T Consensus       103 ni~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD  173 (372)
T 1v43_A          103 NIAFPLK-------IKKFPKDEIDKRVRWAAELLQI--EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD  173 (372)
T ss_dssp             HHHTTCC---------CCCHHHHHHHHHHHHHHTTC--GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred             HHHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence            7655432       2344566777888889998888  555667788999999999     6677789999999999999


Q ss_pred             CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         177 QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ......+.+.+.++.++     |+++|+...+..++|+++.+
T Consensus       174 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl  215 (372)
T 1v43_A          174 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVM  215 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999999988764     77999999999999987644

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.77  E-value=2.3e-21  Score=160.48  Aligned_cols=177  Identities=16%  Similarity=0.140  Sum_probs=130.8

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHH-HHHHHhccCCcEEEEEeCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQAL-RRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l-~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++..+.+|++  ++|.||||||||||+++|++...+.  .|.+++.+.  ++......+ ++.+.+++|+..++...++.
T Consensus        24 isl~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~  101 (235)
T 3tif_A           24 VNLNIKEGEF--VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTAL  101 (235)
T ss_dssp             EEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHH
T ss_pred             eeEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHH
Confidence            3444578888  9999999999999999999998876  788887543  344333333 34588888887655544555


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      +++..+...+.    ....+.++..+.+...++..++  .+.. .+.+.++|+|+.||     |+...|+++++|||+++
T Consensus       102 enl~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~  175 (235)
T 3tif_A          102 ENVELPLIFKY----RGAMSGEERRKRALECLKMAEL--EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWA  175 (235)
T ss_dssp             HHHHHHHHTCS----SSCCCHHHHHHHHHHHHHHTTC--CGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             HHHHHHHHhhh----ccCCCHHHHHHHHHHHHHHCCC--ChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            66655443110    1234566777788888888887  4432 56688999999998     66677899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~  211 (287)
                      +|+.....+.+.+.++.++     ++++|+.+. ...+|+++
T Consensus       176 LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~  216 (235)
T 3tif_A          176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERII  216 (235)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEE
Confidence            9999999999999998754     789999874 45677654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.77  E-value=5.2e-22  Score=172.76  Aligned_cols=176  Identities=15%  Similarity=0.170  Sum_probs=135.4

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|++  +.|.||||||||||+++|++...++  .|.+++.+.....   ..++.+.+++|+..++...++.+
T Consensus        32 ~~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~ltv~e  106 (355)
T 1z47_A           32 RGVSFQIREGEM--VGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP---PQKRNVGLVFQNYALFQHMTVYD  106 (355)
T ss_dssp             EEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---GGGSSEEEECGGGCCCTTSCHHH
T ss_pred             eeeEEEECCCCE--EEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC---hhhCcEEEEecCcccCCCCCHHH
Confidence            344444578999  9999999999999999999998776  7888875531100   11345677777766655556667


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                      ++..+++       ....+.++..+.+.++++..++  ++...+++.++|+|+.||     |+...|+++++|||++++|
T Consensus       107 ni~~~l~-------~~~~~~~~~~~~v~~~l~~~gL--~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD  177 (355)
T 1z47_A          107 NVSFGLR-------EKRVPKDEMDARVRELLRFMRL--ESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID  177 (355)
T ss_dssp             HHHHHHH-------HTTCCHHHHHHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSS
T ss_pred             HHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            7766654       2344566777888889998888  555667788999999988     6677789999999999999


Q ss_pred             CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         177 QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ......+.+.+.++.++     |+++|+.+.+..++|+++.+
T Consensus       178 ~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl  219 (355)
T 1z47_A          178 TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVL  219 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence            99999999999988754     77999999999999987644

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.76  E-value=7.8e-22  Score=172.23  Aligned_cols=187  Identities=15%  Similarity=0.186  Sum_probs=140.1

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|++  +.|.||||||||||+++|++...++  .|.+++.+......   ..+.+.+++|+..++...++.++
T Consensus        21 ~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~~~ltv~en   95 (362)
T 2it1_A           21 NINLKIKDGEF--MALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP---KDRNVGLVFQNWALYPHMTVYKN   95 (362)
T ss_dssp             EEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGTTEEEECTTCCCCTTSCHHHH
T ss_pred             eeEEEECCCCE--EEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH---hHCcEEEEecCcccCCCCCHHHH
Confidence            34444578888  9999999999999999999998776  78888755321111   12457777887766655566677


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +..+++       ....+.++..+.+.++++..++  ++...+++.++|+|+.||     |+...|+++++|||++++|.
T Consensus        96 i~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~  166 (362)
T 2it1_A           96 IAFPLE-------LRKAPREEIDKKVREVAKMLHI--DKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA  166 (362)
T ss_dssp             HHHHHH-------HTTCCHHHHHHHHHHHHHHTTC--TTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCH
T ss_pred             HHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence            766654       2344566777888889998888  455567788999999888     66777899999999999999


Q ss_pred             ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      .....+.+.+.++.++     |+++|+.+.+..++|+++.+-.+.+    +++++..
T Consensus       167 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~  223 (362)
T 2it1_A          167 LLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY  223 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            9999999999998754     7799999999999998764422222    5555543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.76  E-value=1.3e-21  Score=164.62  Aligned_cols=177  Identities=14%  Similarity=0.036  Sum_probs=127.6

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++.++..+.+|++  +.|.||||||||||++++++...+.  .|.+++.+..... ...+++.+.+++|+..+.+..++.
T Consensus        27 L~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~-~~~~~~~i~~v~q~~~~~~~~tv~  103 (266)
T 4g1u_C           27 INDVSLHIASGEM--VAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ-PKALARTRAVMRQYSELAFPFSVS  103 (266)
T ss_dssp             EEEEEEEEETTCE--EEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSC-HHHHHHHEEEECSCCCCCSCCBHH
T ss_pred             EEeeEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCC-HHHHhheEEEEecCCccCCCCCHH
Confidence            3444455578999  9999999999999999999988765  7888886532211 223455677777766544433444


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHH------HHHHhhcC
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILM------CEASKVQQ  169 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~------l~~~~~~d  169 (287)
                      +++..+..         .....+..+.+..+++..++  .+...+.+.++|+|+.||     |+..      .|+++++|
T Consensus       104 e~l~~~~~---------~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD  172 (266)
T 4g1u_C          104 EVIQMGRA---------PYGGSQDRQALQQVMAQTDC--LALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD  172 (266)
T ss_dssp             HHHHGGGT---------TSCSTTHHHHHHHHHHHTTC--STTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC
T ss_pred             HHHHhhhh---------hcCcHHHHHHHHHHHHHcCC--hhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence            44433211         11222344566777888887  444556678899999998     6666      68889999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ||++++|+.....+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       173 EPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl  221 (266)
T 4g1u_C          173 EPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLL  221 (266)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEE
T ss_pred             CccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEE
Confidence            999999999999999999998765     77999999999999988744

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.76  E-value=1.9e-21  Score=159.82  Aligned_cols=175  Identities=15%  Similarity=0.097  Sum_probs=125.7

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHH-HHHHhccCCcEEEEEeCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALR-RTMEKYITTCRLILCANS   99 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~-~~i~~~~~~~~~i~~~~~   99 (287)
                      .++..+++|++  +.|.||||||||||++++++...+.  .|.+++.+.  ........++ +.+.+++|+..++...+.
T Consensus        22 ~vsl~i~~Ge~--~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv   99 (224)
T 2pcj_A           22 GISLSVKKGEF--VSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTA   99 (224)
T ss_dssp             EEEEEEETTCE--EEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred             eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCH
Confidence            34444578888  9999999999999999999988766  788887553  2332222333 567888887655443444


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..+..       +...+.++..+.+.++++..++  ++...+.+.++|+|+.||     |+...|.++++|||+++
T Consensus       100 ~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~  170 (224)
T 2pcj_A          100 LENVIVPML-------KMGKPKKEAKERGEYLLSELGL--GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGN  170 (224)
T ss_dssp             HHHHHHHHH-------HTTCCHHHHHHHHHHHHHHTTC--TTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTT
T ss_pred             HHHHHhHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            455544332       2233445556677888888887  444556678999999888     55666789999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      +|+.....+.+.+.++.++    ++++|+...+ .++|+++
T Consensus       171 LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~  210 (224)
T 2pcj_A          171 LDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTL  210 (224)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEE
T ss_pred             CCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEE
Confidence            9999999999999888754    7799998765 5566543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.75  E-value=2e-21  Score=170.59  Aligned_cols=178  Identities=14%  Similarity=0.189  Sum_probs=135.0

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHH---HHHHHHHHHhccCCcEEEEEeCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREA---QQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~---~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      .++..+++|++  +.|.||||||||||+++|++...++  .|.+++.+......   .....+.+++++|+..++...++
T Consensus        21 ~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv   98 (372)
T 1g29_1           21 EMSLEVKDGEF--MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTV   98 (372)
T ss_dssp             EEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCH
T ss_pred             eeEEEEcCCCE--EEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCCEEEEeCCCccCCCCCH
Confidence            33444578888  9999999999999999999998776  77888754311000   00012457777777766555566


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..+++       ....+.++..+.+.++++..++  ++...+++.++|+|+.||     |+...|+++++|||+++
T Consensus        99 ~eni~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~  169 (372)
T 1g29_1           99 YDNIAFPLK-------LRKVPRQEIDQRVREVAELLGL--TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSN  169 (372)
T ss_dssp             HHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHTC--GGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTT
T ss_pred             HHHHHHHHH-------HcCCCHHHHHHHHHHHHHHCCC--chHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCcc
Confidence            677766654       2345666777788889998888  555667788999999888     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|......+.+.+.++.++     |+++|+.+.+..++|+++.+
T Consensus       170 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl  213 (372)
T 1g29_1          170 LDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVM  213 (372)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEE
Confidence            9999999999999988764     77999999999999987644

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.75  E-value=7.2e-22  Score=172.27  Aligned_cols=175  Identities=14%  Similarity=0.163  Sum_probs=131.9

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|++  +.|.||||||||||+++|++...++  .|.+|+.+......   ..+.+.+++|+..++...++.++
T Consensus        21 ~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~~~ltv~en   95 (359)
T 2yyz_A           21 GVSFEVKDGEF--VALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP---KYREVGMVFQNYALYPHMTVFEN   95 (359)
T ss_dssp             EEEEEECTTCE--EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGTTEEEECSSCCCCTTSCHHHH
T ss_pred             eeEEEEcCCCE--EEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh---hhCcEEEEecCcccCCCCCHHHH
Confidence            34444578888  9999999999999999999998776  78888755311110   12457777777665555555566


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +..+++       +...+.++..+.+.++++..++  ++...+++.++|+|+.||     |+...|+++++|||++++|.
T Consensus        96 i~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~  166 (359)
T 2yyz_A           96 IAFPLR-------ARRISKDEVEKRVVEIARKLLI--DNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA  166 (359)
T ss_dssp             HHGGGS-------SSCSHHHHTTHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred             HHHHHH-------hcCCCHHHHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence            654433       2234455566778888888887  555667788999999888     67777899999999999999


Q ss_pred             ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .....+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       167 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl  207 (359)
T 2yyz_A          167 NLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVF  207 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            9999999999988764     77999999999999987644

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.75  E-value=1.9e-21  Score=169.71  Aligned_cols=178  Identities=13%  Similarity=0.151  Sum_probs=132.3

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH--HHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE--AQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~--~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      .++..+++|++  +.|.||||||||||+++|++...++  .|.+++.+.....  .....++.+.+++|+..++...++.
T Consensus        23 ~vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~  100 (353)
T 1oxx_K           23 NVNINIENGER--FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAF  100 (353)
T ss_dssp             EEEEEECTTCE--EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHH
T ss_pred             ceEEEECCCCE--EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCHH
Confidence            34444578888  9999999999999999999998776  7788875421100  0001124466677766555444555


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++..+++       ....+.++..+.+.++++..++  ++...+++.++|+|+.||     |+...|+++++|||++++
T Consensus       101 eni~~~~~-------~~~~~~~~~~~~v~~~l~~~~L--~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~L  171 (353)
T 1oxx_K          101 ENIAFPLT-------NMKMSKEEIRKRVEEVAKILDI--HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL  171 (353)
T ss_dssp             HHHHGGGT-------TSSCCHHHHHHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred             HHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence            56554433       2234566777788889998888  555667788999999988     667778999999999999


Q ss_pred             cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |......+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       172 D~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl  214 (353)
T 1oxx_K          172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVL  214 (353)
T ss_dssp             CGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999998754     77999999999999987644

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.74  E-value=1.5e-21  Score=163.25  Aligned_cols=176  Identities=13%  Similarity=0.182  Sum_probs=127.1

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+.+|++  +.|.||||||||||+++|++...+.  .|.+++.+.-. . ...+++.+.+++|+..++...+..++
T Consensus        33 ~vsl~i~~Gei--~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~-~~~~~~~i~~v~q~~~l~~~ltv~en  108 (256)
T 1vpl_A           33 GISFEIEEGEI--FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-E-PHEVRKLISYLPEEAGAYRNMQGIEY  108 (256)
T ss_dssp             EEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-C-HHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred             eeEEEEcCCcE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-c-HHHHhhcEEEEcCCCCCCCCCcHHHH
Confidence            33444578888  9999999999999999999998766  78888765322 1 22344557777776654333334444


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +.....       +...+.++..+.+..+++..|+  ++...+.+.++|+|+.||     |+...|+++++|||++++|+
T Consensus       109 l~~~~~-------~~~~~~~~~~~~~~~~l~~~gL--~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~  179 (256)
T 1vpl_A          109 LRFVAG-------FYASSSSEIEEMVERATEIAGL--GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV  179 (256)
T ss_dssp             HHHHHH-------HHCCCHHHHHHHHHHHHHHHCC--GGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred             HHHHHH-------HcCCChHHHHHHHHHHHHHCCC--chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCH
Confidence            433221       2233445555667788888887  455556678899999888     66666889999999999999


Q ss_pred             ccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .....+.+.+.++.+.    ++++|+.+.+..++++++.+
T Consensus       180 ~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l  219 (256)
T 1vpl_A          180 LNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI  219 (256)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEE
Confidence            9999999999888654    77999999988888877644

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.74  E-value=8.8e-17  Score=141.09  Aligned_cols=151  Identities=19%  Similarity=0.179  Sum_probs=115.5

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHh----------cC-CCC-cEEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK----------EG-DFP-HLLFYGPSGAGKKTRIMALLKELYGP--------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~----------~g-~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~--------   62 (287)
                      .|..++.+.+|++++|...+++.+...+.          .+ ..+ +++|+||||||||++++++++.+..+        
T Consensus        40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~  119 (355)
T 2qp9_X           40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD  119 (355)
T ss_dssp             -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred             hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHH
Confidence            46678899999999999999888887762          12 222 39999999999999999999887543        


Q ss_pred             --------------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhc---cCCcEEEEEeCCCCC
Q psy2281          63 --------------------------VIILNETDHLTRE-----------AQQALRRTMEKY---ITTCRLILCANSMSQ  102 (287)
Q Consensus        63 --------------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~---~~~~~~i~~~~~~~~  102 (287)
                                                +|+|||+|.+...           .++.++..++..   .....++.++|.++.
T Consensus       120 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~  199 (355)
T 2qp9_X          120 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQ  199 (355)
T ss_dssp             HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGG
T ss_pred             HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCccc
Confidence                                      8999999987632           355666666644   234456667777788


Q ss_pred             CcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281         103 VIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR  153 (287)
Q Consensus       103 l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G  153 (287)
                      +.+++++|| ..+.++.|+.++...++...+...+..+++..+..+++.+.|
T Consensus       200 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G  251 (355)
T 2qp9_X          200 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG  251 (355)
T ss_dssp             SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTT
T ss_pred             CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCC
Confidence            999999999 568899999999999999999888776788899999999888

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.74  E-value=9.7e-22  Score=164.96  Aligned_cols=186  Identities=16%  Similarity=0.155  Sum_probs=129.1

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|++  +.|.||||||||||++++++.+.+.  .|.+++.+.-........++.+.+++|+..++...++.+
T Consensus        24 ~~vsl~i~~Ge~--~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e  101 (257)
T 1g6h_A           24 DGVSISVNKGDV--TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLE  101 (257)
T ss_dssp             EEECCEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHH
T ss_pred             eeeEEEEeCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHH
Confidence            344445578888  9999999999999999999998766  788887553211112233455777777765443334445


Q ss_pred             CCcHHHhc-cccee--ecC---CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281         102 QVIPAIRS-RCLCI--RIP---APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus       102 ~l~~~l~s-r~~~~--~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ++..+... +...+  .|.   ..+..+..+.+.++++..|+  ++...+.+.++|+|+.||     |+...|+++++||
T Consensus       102 nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDE  179 (257)
T 1g6h_A          102 NLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL--SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE  179 (257)
T ss_dssp             HHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred             HHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCC--chhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence            54332211 00000  000   02223455667788888887  455566788999999988     6667789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|+.....+.+.+.++.++    ++++|+.+.+..++|+++.+
T Consensus       180 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l  226 (257)
T 1g6h_A          180 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM  226 (257)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred             CccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            99999999999999999988764    77999999998888887644

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.74  E-value=9e-17  Score=139.27  Aligned_cols=152  Identities=19%  Similarity=0.193  Sum_probs=122.7

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHH----------hcCCC-C-cEEEeCCCCCcHHHHHHHHHHHhCCC-------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLL----------KEGDF-P-HLLFYGPSGAGKKTRIMALLKELYGP-------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~----------~~g~~-~-~~~l~Gp~G~GKTtl~~~l~~~~~~~-------   62 (287)
                      ..|..++.+.+|++++|...+++.+...+          ..+.. + +++|+||||||||++++++++....+       
T Consensus         6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~   85 (322)
T 3eie_A            6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS   85 (322)
T ss_dssp             CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred             cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence            35889999999999999999999998877          12222 2 39999999999999999999887543       


Q ss_pred             ---------------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhc---cCCcEEEEEeCCCC
Q psy2281          63 ---------------------------VIILNETDHLTR-----------EAQQALRRTMEKY---ITTCRLILCANSMS  101 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~---~~~~~~i~~~~~~~  101 (287)
                                                 +|+|||+|.+..           ..+..++..++..   .....++.++|.++
T Consensus        86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~  165 (322)
T 3eie_A           86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPW  165 (322)
T ss_dssp             HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGG
T ss_pred             HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChh
Confidence                                       899999998743           2355666677654   23345566777778


Q ss_pred             CCcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281         102 QVIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR  153 (287)
Q Consensus       102 ~l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G  153 (287)
                      .+.+++++||. .+.++.|+.++...+++..+...+..+++.....+++.+.|
T Consensus       166 ~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g  218 (322)
T 3eie_A          166 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEG  218 (322)
T ss_dssp             GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTT
T ss_pred             hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCC
Confidence            89999999994 68899999999999999999888877789999999998877

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.74  E-value=2e-17  Score=142.37  Aligned_cols=153  Identities=23%  Similarity=0.257  Sum_probs=124.7

Q ss_pred             CccCcHHHHHHHHHHHh---------------cCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------C----------
Q psy2281          15 KLDFHCKQANHLRNLLK---------------EGDFPHLLFYGPSGAGKKTRIMALLKELYG-------P----------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~---------------~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------~----------   62 (287)
                      +++|+..+++.+...+.               .....+++|+||||||||++++++++.+..       +          
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~  111 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV  111 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence            58888888887776653               222334999999999999999999887621       1          


Q ss_pred             ---------------------EEEEeCCCCC---------CHHHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHHH
Q psy2281          63 ---------------------VIILNETDHL---------TREAQQALRRTMEKYITTCRLILCANSMS-----QVIPAI  107 (287)
Q Consensus        63 ---------------------~i~ide~d~l---------~~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~l  107 (287)
                                           +++|||+|.+         +...++.|++.++....+..++++++...     .+.+++
T Consensus       112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l  191 (309)
T 3syl_A          112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF  191 (309)
T ss_dssp             CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred             hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence                                 9999999977         67788899999998776777777765432     245899


Q ss_pred             hccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--------cCCcHHHHHHHHHHHhh
Q psy2281         108 RSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ--------SDRNLRRAILMCEASKV  167 (287)
Q Consensus       108 ~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------s~G~~r~al~~l~~~~~  167 (287)
                      ++|| ..+.|++++.+++..++...++..++.+++++.+.+.+.        ..|+.|.+.+.++.++.
T Consensus       192 ~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~  260 (309)
T 3syl_A          192 RSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL  260 (309)
T ss_dssp             HHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence            9999 789999999999999999999999999999999999886        34889998888887764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.73  E-value=2.8e-21  Score=168.01  Aligned_cols=171  Identities=12%  Similarity=0.110  Sum_probs=130.4

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                      ++..+++|++  +.|.||||||||||+++|++...++  .|.+++.+....   ...++.+.+++|+..++...++.+++
T Consensus        19 vsl~i~~Ge~--~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---~~~~r~ig~v~Q~~~l~~~ltv~enl   93 (348)
T 3d31_A           19 LSLKVESGEY--FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL---SPEKHDIAFVYQNYSLFPHMNVKKNL   93 (348)
T ss_dssp             EEEEECTTCE--EEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS---CHHHHTCEEECTTCCCCTTSCHHHHH
T ss_pred             eEEEEcCCCE--EEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC---chhhCcEEEEecCcccCCCCCHHHHH
Confidence            3444578888  9999999999999999999998776  788887553211   11245688888887766666667777


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCc
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQI  178 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~  178 (287)
                      ..+++.+       ..+.+   +.+.++++..++  ++...+++.++|+|+.||     |+...|+++++|||++++|..
T Consensus        94 ~~~~~~~-------~~~~~---~~v~~~l~~~~L--~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~  161 (348)
T 3d31_A           94 EFGMRMK-------KIKDP---KRVLDTARDLKI--EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR  161 (348)
T ss_dssp             HHHHHHH-------CCCCH---HHHHHHHHHTTC--TTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHH
T ss_pred             HHHHHHc-------CCCHH---HHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence            6665421       11112   556777787787  455567788999999988     666668999999999999999


Q ss_pred             cCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         179 VEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       179 ~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ....+.+.+.++.++     ++++|+...+..++|+++.+
T Consensus       162 ~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl  201 (348)
T 3d31_A          162 TQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVV  201 (348)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999998764     77999999999999987644

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.73  E-value=2.7e-16  Score=136.35  Aligned_cols=156  Identities=16%  Similarity=0.201  Sum_probs=124.2

Q ss_pred             CCCCCcc-C--cHHHHHHHHHHHhcC--CCCcEEEeCCCCCcHHHHHHHHHHHh---CCC--------------------
Q psy2281          11 NNLQKLD-F--HCKQANHLRNLLKEG--DFPHLLFYGPSGAGKKTRIMALLKEL---YGP--------------------   62 (287)
Q Consensus        11 ~~~~~~~-~--~~~~~~~l~~~~~~g--~~~~~~l~Gp~G~GKTtl~~~l~~~~---~~~--------------------   62 (287)
                      .+|++++ |  +......+...+...  ..++++|+||||+||||+++++++.+   ...                    
T Consensus         8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   87 (324)
T 1l8q_A            8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKG   87 (324)
T ss_dssp             CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHT
T ss_pred             CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcC
Confidence            3677776 3  445566677776553  23459999999999999999999876   222                    


Q ss_pred             -------------EEEEeCCCCCCH--HHHHHHHHHHHhcc-CCcEEEEEeCCCC----CCcHHHhccc---ceeecCCC
Q psy2281          63 -------------VIILNETDHLTR--EAQQALRRTMEKYI-TTCRLILCANSMS----QVIPAIRSRC---LCIRIPAP  119 (287)
Q Consensus        63 -------------~i~ide~d~l~~--~~~~~l~~~i~~~~-~~~~~i~~~~~~~----~l~~~l~sr~---~~~~~~~~  119 (287)
                                   ++++||++.+..  ..+..+...+.... ....++++++...    .+.+.+.+|+   ..+.+++ 
T Consensus        88 ~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-  166 (324)
T 1l8q_A           88 TINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-  166 (324)
T ss_dssp             CHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-
T ss_pred             cHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-
Confidence                         899999998875  56777777776543 3456777776542    5889999999   6789999 


Q ss_pred             CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281         120 THEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus       120 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      +.++...++...++..++.+++++.+++++.+ |+.|.+.+.+..+...
T Consensus       167 ~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~  214 (324)
T 1l8q_A          167 DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK  214 (324)
T ss_dssp             CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999 9999999998887765

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.72  E-value=7.8e-17  Score=140.15  Aligned_cols=148  Identities=16%  Similarity=0.126  Sum_probs=118.5

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      ..|+++++|..+++++|+..++..+...+..|..  ++|+||||+|||++++++++.+..+                   
T Consensus        15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~~--vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~   92 (331)
T 2r44_A           15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGGH--ILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTM   92 (331)
T ss_dssp             HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTCC--EEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEE
T ss_pred             HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCCe--EEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCce
Confidence            3699999999999999999999988888877765  9999999999999999999865321                   


Q ss_pred             -------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCCC-----CCcHHH
Q psy2281          63 -------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSMS-----QVIPAI  107 (287)
Q Consensus        63 -------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~~-----~l~~~l  107 (287)
                                         ++++||++.++...++.|+..++..           +....++.++|..+     .+.+++
T Consensus        93 ~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l  172 (331)
T 2r44_A           93 IYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQ  172 (331)
T ss_dssp             EEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHH
T ss_pred             eecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHH
Confidence                               8999999999999999999988852           22333443444222     288999


Q ss_pred             hcccc-eeecCCCCHHHHHHHHHHHHHHh----------------------CCCCCHHHHHHHHHHc
Q psy2281         108 RSRCL-CIRIPAPTHEEIVSVLTNICKKE----------------------GLTIPPEFALRLAQQS  151 (287)
Q Consensus       108 ~sr~~-~~~~~~~~~~~~~~~l~~~~~~~----------------------~~~~~~~~~~~l~~~s  151 (287)
                      ++||. .+.+..|+.++..+++...+...                      ++.+++++.+++++++
T Consensus       173 ~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~  239 (331)
T 2r44_A          173 VDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELV  239 (331)
T ss_dssp             HTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHH
T ss_pred             HhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence            99997 48999999999999988876542                      5667888888887654

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.71  E-value=2.2e-16  Score=138.76  Aligned_cols=154  Identities=19%  Similarity=0.233  Sum_probs=121.1

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP---------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~---------   62 (287)
                      +.++++|.+|++++|+..+++.+...+..           +..+ +++|+||+|||||++++++++....+         
T Consensus        74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l  153 (357)
T 3d8b_A           74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSL  153 (357)
T ss_dssp             TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred             cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHh
Confidence            56789999999999999999888887732           2223 39999999999999999999887533         


Q ss_pred             -------------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhc----cCCcEEEEEeCCCCC
Q psy2281          63 -------------------------VIILNETDHLTR-----------EAQQALRRTMEKY----ITTCRLILCANSMSQ  102 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~----~~~~~~i~~~~~~~~  102 (287)
                                               +|+|||+|.+..           ..+..++..++..    ..+..++.++|..+.
T Consensus       154 ~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~  233 (357)
T 3d8b_A          154 TSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQE  233 (357)
T ss_dssp             CCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGG
T ss_pred             hccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhh
Confidence                                     899999987621           2344556666543    233456667777778


Q ss_pred             CcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281         103 VIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR  157 (287)
Q Consensus       103 l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~  157 (287)
                      +.+++++||. .+.++.|+.++...++...++..++.+++...+.+++.+.|-..+
T Consensus       234 l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~  289 (357)
T 3d8b_A          234 IDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGA  289 (357)
T ss_dssp             BCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHH
T ss_pred             CCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHH
Confidence            9999999996 678999999999999999999888888999999999988884333

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.71  E-value=8.9e-17  Score=146.00  Aligned_cols=158  Identities=15%  Similarity=0.230  Sum_probs=119.6

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------C----------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------P----------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------~----------   62 (287)
                      .|.++|||..+++++|+...+..+...+..+..+|++|+||||+|||+++++++..+..          .          
T Consensus       169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~  248 (468)
T 3pxg_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY  248 (468)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred             HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccc
Confidence            58899999999999999999999999988777778999999999999999999988611          0          


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHHHhcccceeec
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS-----QVIPAIRSRCLCIRI  116 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~l~sr~~~~~~  116 (287)
                                           ++++|    .+.+.++.|.+.++.  ....+|.++|..+     .+.+++++||..+.|
T Consensus       249 ~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v  322 (468)
T 3pxg_A          249 RGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQV  322 (468)
T ss_dssp             ----CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred             cchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCcccee
Confidence                                 66666    223344555544442  2456666666665     478999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcHH------HHHHHHHHHh
Q psy2281         117 PAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNLR------RAILMCEASK  166 (287)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~r------~al~~l~~~~  166 (287)
                      ..|+.++...++..++..    .++.+++++...++.++.+.++      +++..++...
T Consensus       323 ~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~  382 (468)
T 3pxg_A          323 DQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAG  382 (468)
T ss_dssp             CCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHH
Confidence            999999999999988766    6788899999999988765432      4666665443

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.3e-15  Score=133.84  Aligned_cols=156  Identities=19%  Similarity=0.301  Sum_probs=113.1

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC----------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP----------   62 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~----------   62 (287)
                      ++-...+|+++.|..++++.|+..+.           -|-.|+  ++|+||||||||++++++|++...+          
T Consensus       140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~  219 (405)
T 4b4t_J          140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELV  219 (405)
T ss_dssp             ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGS
T ss_pred             cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhh
Confidence            33444689999999999988887762           143333  9999999999999999999998654          


Q ss_pred             ------------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC--CcEEEEEeCCCCC
Q psy2281          63 ------------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT--TCRLILCANSMSQ  102 (287)
Q Consensus        63 ------------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~--~~~~i~~~~~~~~  102 (287)
                                              +|+|||+|.+..           .   ....|+..|+....  +..++.++|.++.
T Consensus       220 sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~  299 (405)
T 4b4t_J          220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI  299 (405)
T ss_dssp             CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred             ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence                                    999999998632           1   23345556665433  3346677888899


Q ss_pred             CcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHHHH
Q psy2281         103 VIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRRAILMC  162 (287)
Q Consensus       103 l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~al~~l  162 (287)
                      +++++++  |+ ..+.|+.|+.++..++++..+++.++. ++..++.+++.+    |.|++..+...
T Consensus       300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA  365 (405)
T 4b4t_J          300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEA  365 (405)
T ss_dssp             SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred             CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence            9999987  77 468999999999999998888776653 222356666654    44666655443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.70  E-value=1.1e-15  Score=132.44  Aligned_cols=150  Identities=19%  Similarity=0.187  Sum_probs=117.4

Q ss_pred             ccccCCCCCCCccCcHHHHHHHHHHHh----------cCCCC--cEEEeCCCCCcHHHHHHHHHHHh-CCC---------
Q psy2281           5 VDKYRPNNLQKLDFHCKQANHLRNLLK----------EGDFP--HLLFYGPSGAGKKTRIMALLKEL-YGP---------   62 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~----------~g~~~--~~~l~Gp~G~GKTtl~~~l~~~~-~~~---------   62 (287)
                      +.++.+.+|+++.|...+++.+...+.          .+..|  +++|+||||||||++++++++.. ...         
T Consensus         3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l   82 (322)
T 1xwi_A            3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL   82 (322)
T ss_dssp             EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred             eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence            345677899999999999998887762          11222  39999999999999999999987 221         


Q ss_pred             -------------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhc---cCCcEEEEEeCCCCCC
Q psy2281          63 -------------------------VIILNETDHLT-----------REAQQALRRTMEKY---ITTCRLILCANSMSQV  103 (287)
Q Consensus        63 -------------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~---~~~~~~i~~~~~~~~l  103 (287)
                                               +|+|||+|.+.           ....+.++..++..   .....++.++|.++.+
T Consensus        83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l  162 (322)
T 1xwi_A           83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL  162 (322)
T ss_dssp             CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred             HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence                                     89999999872           12345566666654   2334566677778889


Q ss_pred             cHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281         104 IPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN  154 (287)
Q Consensus       104 ~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~  154 (287)
                      .+++++|| ..+.++.|+.++...+++..+...+..+++...+.+++.+.|-
T Consensus       163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~  214 (322)
T 1xwi_A          163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGY  214 (322)
T ss_dssp             CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTC
T ss_pred             CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCC
Confidence            99999999 5688999999999999999988877777888999999988774

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.70  E-value=4.7e-21  Score=159.13  Aligned_cols=177  Identities=18%  Similarity=0.105  Sum_probs=119.7

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|++  +.|.||||||||||+++|++...+.  .|.+++.+.-........++.+.+++|+..++...+..++
T Consensus        24 ~vsl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en  101 (240)
T 1ji0_A           24 GIDLKVPRGQI--VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN  101 (240)
T ss_dssp             EEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred             eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence            34444578888  9999999999999999999988766  7888875532111111122336777776544333333344


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEG-LTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                      +..+..        ...+.++..+.+..+++..+ +  ++...+.+.++|+|+.||     |+...|+++++|||++++|
T Consensus       102 l~~~~~--------~~~~~~~~~~~~~~~l~~~~~l--~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD  171 (240)
T 1ji0_A          102 LMMGAY--------NRKDKEGIKRDLEWIFSLFPRL--KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA  171 (240)
T ss_dssp             HHGGGT--------TCCCSSHHHHHHHHHHHHCHHH--HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC
T ss_pred             HHHhhh--------cCCCHHHHHHHHHHHHHHcccH--hhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence            432210        11122344455666666653 4  222334566799998888     6666788999999999999


Q ss_pred             CccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         177 QIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       177 ~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +.....+.+.+.++.+.    ++++|+.+.+..++|+++.+
T Consensus       172 ~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l  212 (240)
T 1ji0_A          172 PILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL  212 (240)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEE
Confidence            99999999999888654    77999999999988887644

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.69  E-value=3.2e-16  Score=131.38  Aligned_cols=163  Identities=17%  Similarity=0.224  Sum_probs=116.2

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP--------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~--------   62 (287)
                      +|.+++++..|++++|...+++.+...+..           ...| +++|+|||||||||+++++++....+        
T Consensus         1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~   80 (257)
T 1lv7_A            1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD   80 (257)
T ss_dssp             CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred             CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence            599999999999999999888777665521           2233 39999999999999999999987533        


Q ss_pred             --------------------------EEEEeCCCCCCH--------------HHHHHHHHHHHhcc--CCcEEEEEeCCC
Q psy2281          63 --------------------------VIILNETDHLTR--------------EAQQALRRTMEKYI--TTCRLILCANSM  100 (287)
Q Consensus        63 --------------------------~i~ide~d~l~~--------------~~~~~l~~~i~~~~--~~~~~i~~~~~~  100 (287)
                                                ++++||+|.+..              .....++..++...  ....++.+++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~  160 (257)
T 1lv7_A           81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP  160 (257)
T ss_dssp             STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCT
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCc
Confidence                                      788999865421              22344555565432  234566677777


Q ss_pred             CCCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHh
Q psy2281         101 SQVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR-NLRRAILMCEASK  166 (287)
Q Consensus       101 ~~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G-~~r~al~~l~~~~  166 (287)
                      +.+.+++.+  |+. .+.++.|+.++..++++..++...+. ++.....++..+.| +.|...+....+.
T Consensus       161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~  229 (257)
T 1lv7_A          161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAA  229 (257)
T ss_dssp             TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred             hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            888888877  764 57888999999999888887765542 22235677888888 6666555544443

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.69  E-value=9.1e-21  Score=157.15  Aligned_cols=166  Identities=14%  Similarity=0.107  Sum_probs=116.5

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~  108 (287)
                      ++ ++  +.|.||||||||||++++++...+.  .|.+++.+.-..   ...++.+.+++|+..++...+..+++..+..
T Consensus        23 ~~-e~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~   96 (240)
T 2onk_A           23 GR-DY--CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL---PPERRGIGFVPQDYALFPHLSVYRNIAYGLR   96 (240)
T ss_dssp             CS-SE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS---CTTTSCCBCCCSSCCCCTTSCHHHHHHTTCT
T ss_pred             CC-EE--EEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC---chhhCcEEEEcCCCccCCCCcHHHHHHHHHH
Confidence            55 66  9999999999999999999998766  788887543110   1112346666666543322233333322111


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW  183 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~  183 (287)
                             +.  ......+.+.++++..|+  ++...+.+.++|+|+.||     |+...|+++++|||++++|+.....+
T Consensus        97 -------~~--~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~  165 (240)
T 2onk_A           97 -------NV--ERVERDRRVREMAEKLGI--AHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVL  165 (240)
T ss_dssp             -------TS--CHHHHHHHHHHHHHTTTC--TTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHH
T ss_pred             -------Hc--CCchHHHHHHHHHHHcCC--HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence                   11  111225567777887777  444556678999999888     66667899999999999999999999


Q ss_pred             HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       166 ~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l  200 (240)
T 2onk_A          166 MEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM  200 (240)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999988653     77999999999988887644

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.69  E-value=1.2e-15  Score=135.22  Aligned_cols=163  Identities=18%  Similarity=0.260  Sum_probs=131.3

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhc---C---CCCcEEEeCCCCCcHHHHHHHHHHHhCC----C----------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE---G---DFPHLLFYGPSGAGKKTRIMALLKELYG----P----------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g---~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~----------   62 (287)
                      +|.++|+|   ++++|+......+...+..   |   ..|+++|+||+|+||||+++++++.+..    .          
T Consensus         9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~   85 (389)
T 1fnn_A            9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR   85 (389)
T ss_dssp             GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred             hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCC
Confidence            46778888   7789998888777777743   2   2235999999999999999999887621    0          


Q ss_pred             ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhcc----CCcEEEEE
Q psy2281          63 ------------------------------------------VIILNETDHLTREAQQALRRTMEKYI----TTCRLILC   96 (287)
Q Consensus        63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~----~~~~~i~~   96 (287)
                                                                ++++||++.++...+..|.+.++...    .+..++++
T Consensus        86 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~  165 (389)
T 1fnn_A           86 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIV  165 (389)
T ss_dssp             SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred             CHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEE
Confidence                                                      78999999998888888888877654    36677888


Q ss_pred             eCCC---CCCcHHHhcccc--eeecCCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHc---------CCcHHHHHH
Q psy2281          97 ANSM---SQVIPAIRSRCL--CIRIPAPTHEEIVSVLTNICKKE--GLTIPPEFALRLAQQS---------DRNLRRAIL  160 (287)
Q Consensus        97 ~~~~---~~l~~~l~sr~~--~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~s---------~G~~r~al~  160 (287)
                      ++..   +.+.+.+.+|+.  .+.|++++.+++..++...+...  ...+++++.+.+++.+         +|+.|.++.
T Consensus       166 ~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~  245 (389)
T 1fnn_A          166 GHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID  245 (389)
T ss_dssp             ESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred             ECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence            7776   568888999986  69999999999999999988762  2356899999999999         899999999


Q ss_pred             HHHHHhhc
Q psy2281         161 MCEASKVQ  168 (287)
Q Consensus       161 ~l~~~~~~  168 (287)
                      .+..+...
T Consensus       246 ~l~~a~~~  253 (389)
T 1fnn_A          246 ILYRSAYA  253 (389)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.69  E-value=1.1e-20  Score=159.29  Aligned_cols=173  Identities=15%  Similarity=0.133  Sum_probs=123.3

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCc-EEEEEeCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTC-RLILCANSMS  101 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~-~~i~~~~~~~  101 (287)
                      .++..+.+|++  +.|.||||||||||+++|++...+.  .|.+++.+. ...   .+++.+.+++|++ ..++..+..+
T Consensus        25 ~vsl~i~~Ge~--~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~-~~~---~~~~~i~~v~q~~~~~~~~~tv~e   98 (266)
T 2yz2_A           25 NVSLVINEGEC--LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERK-KGY---EIRRNIGIAFQYPEDQFFAERVFD   98 (266)
T ss_dssp             EEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC-CHH---HHGGGEEEECSSGGGGCCCSSHHH
T ss_pred             eeEEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEEC-chH---HhhhhEEEEeccchhhcCCCcHHH
Confidence            34444578888  9999999999999999999988766  788887653 321   3445567777764 2333334444


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP--PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      ++..+..       .. .+.++..+.+...++..|+  +  +...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus        99 nl~~~~~-------~~-~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~  168 (266)
T 2yz2_A           99 EVAFAVK-------NF-YPDRDPVPLVKKAMEFVGL--DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVG  168 (266)
T ss_dssp             HHHHTTT-------TT-CTTSCSHHHHHHHHHHTTC--CHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred             HHHHHHH-------hc-CCHHHHHHHHHHHHHHcCc--CCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence            4433211       00 1222233456677777787  6  55566778999999988     66667889999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|+.....+.+.+.++.++    ++++|+.+.+..++|+++.+
T Consensus       169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l  211 (266)
T 2yz2_A          169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVL  211 (266)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999999999888654    77999999988888877644

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.68  E-value=8.5e-16  Score=138.65  Aligned_cols=150  Identities=18%  Similarity=0.155  Sum_probs=118.5

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHh----------cC-CCC-cEEEeCCCCCcHHHHHHHHHHHh-CCC--------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLK----------EG-DFP-HLLFYGPSGAGKKTRIMALLKEL-YGP--------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~----------~g-~~~-~~~l~Gp~G~GKTtl~~~l~~~~-~~~--------   62 (287)
                      +..++.+.+|++++|...++..|...+.          .+ ..+ +++|+||||||||++++++++.+ ..+        
T Consensus       124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~  203 (444)
T 2zan_A          124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD  203 (444)
T ss_dssp             CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred             eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence            5567888999999999999998887762          11 222 39999999999999999999987 211        


Q ss_pred             --------------------------EEEEeCCCCCC-----------HHHHHHHHHHHHhc---cCCcEEEEEeCCCCC
Q psy2281          63 --------------------------VIILNETDHLT-----------REAQQALRRTMEKY---ITTCRLILCANSMSQ  102 (287)
Q Consensus        63 --------------------------~i~ide~d~l~-----------~~~~~~l~~~i~~~---~~~~~~i~~~~~~~~  102 (287)
                                                +|+|||+|.+.           ...++.++..++..   .....++.++|.++.
T Consensus       204 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~  283 (444)
T 2zan_A          204 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWV  283 (444)
T ss_dssp             --------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGG
T ss_pred             HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccc
Confidence                                      89999999873           23345555555543   334567777888888


Q ss_pred             CcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281         103 VIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR  153 (287)
Q Consensus       103 l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G  153 (287)
                      +.+++++||. .+.++.|+.++...++...+...+..+++..+..++..+.|
T Consensus       284 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G  335 (444)
T 2zan_A          284 LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDG  335 (444)
T ss_dssp             SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTT
T ss_pred             cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence            9999999995 78899999999999999988877766788899999998888

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.68  E-value=6.6e-21  Score=155.11  Aligned_cols=166  Identities=16%  Similarity=0.127  Sum_probs=116.2

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                      ++..+++|++  ++|.||||||||||++++++...+.  .|.+++.+. .     ..++.+.+++|+..++...+..+++
T Consensus        28 vsl~i~~Ge~--~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~-~-----~~~~~i~~v~q~~~~~~~~tv~enl   99 (214)
T 1sgw_A           28 ITMTIEKGNV--VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI-T-----KVKGKIFFLPEEIIVPRKISVEDYL   99 (214)
T ss_dssp             EEEEEETTCC--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG-G-----GGGGGEEEECSSCCCCTTSBHHHHH
T ss_pred             eEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEh-h-----hhcCcEEEEeCCCcCCCCCCHHHHH
Confidence            3344578999  9999999999999999999988766  788887553 2     1234466666665443222333444


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCc
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQI  178 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~  178 (287)
                      .....       +.... .+ .+.+..+++..|+.  +. .+.+.++|+|+.||     |+...|.++++|||++++|+.
T Consensus       100 ~~~~~-------~~~~~-~~-~~~~~~~l~~~gl~--~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~  167 (214)
T 1sgw_A          100 KAVAS-------LYGVK-VN-KNEIMDALESVEVL--DL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED  167 (214)
T ss_dssp             HHHHH-------HTTCC-CC-HHHHHHHHHHTTCC--CT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred             HHHHH-------hcCCc-hH-HHHHHHHHHHcCCC--cC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence            33221       11111 11 34456667777873  33 56678899999888     555567899999999999999


Q ss_pred             cCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         179 VEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       179 ~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      ....+.+.+.++.+.    ++++|+.+.+..++++++
T Consensus       168 ~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~  204 (214)
T 1sgw_A          168 SKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH  204 (214)
T ss_dssp             THHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence            999999999888754    779999988877777655

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.68  E-value=6.9e-16  Score=136.58  Aligned_cols=164  Identities=16%  Similarity=0.144  Sum_probs=125.8

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhc---CC-CCcEEEeCCCCCcHHHHHHHHHHHh-----------CC------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE---GD-FPHLLFYGPSGAGKKTRIMALLKEL-----------YG------   61 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g~-~~~~~l~Gp~G~GKTtl~~~l~~~~-----------~~------   61 (287)
                      .|..+|+|   ++++|+....+.+...+..   +. .++++|+||+|+||||+++++++.+           ..      
T Consensus        12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~   88 (384)
T 2qby_B           12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN   88 (384)
T ss_dssp             TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred             hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence            57888999   7889998887777766532   33 3349999999999999999998753           10      


Q ss_pred             ---------------------------------------------C-EEEEeCCCCCCHHH-HHH-HHHHHHhccCCcEE
Q psy2281          62 ---------------------------------------------P-VIILNETDHLTREA-QQA-LRRTMEKYITTCRL   93 (287)
Q Consensus        62 ---------------------------------------------~-~i~ide~d~l~~~~-~~~-l~~~i~~~~~~~~~   93 (287)
                                                                   . +++|||+|.+.... ++. +...+... .+..+
T Consensus        89 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~i  167 (384)
T 2qby_B           89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISV  167 (384)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEE
T ss_pred             CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cceEE
Confidence                                                         0 78999998765432 344 44444433 56677


Q ss_pred             EEEeCCC---CCCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHcC---CcHHHHHHHHHH
Q psy2281          94 ILCANSM---SQVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKK--EGLTIPPEFALRLAQQSD---RNLRRAILMCEA  164 (287)
Q Consensus        94 i~~~~~~---~~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~s~---G~~r~al~~l~~  164 (287)
                      +++++..   +.+.+++++|+ ..+.|++++.+++..++...++.  .+..+++++.+.+++.++   |+.|.+++.++.
T Consensus       168 I~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~  247 (384)
T 2qby_B          168 IMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFR  247 (384)
T ss_dssp             EEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             EEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            8887766   56888999995 68999999999999999998875  345668899999999998   999999999988


Q ss_pred             HhhcCC
Q psy2281         165 SKVQQY  170 (287)
Q Consensus       165 ~~~~de  170 (287)
                      +....+
T Consensus       248 a~~~a~  253 (384)
T 2qby_B          248 AAQLAS  253 (384)
T ss_dssp             HHHHTT
T ss_pred             HHHHhc
Confidence            776544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.68  E-value=6.2e-15  Score=123.66  Aligned_cols=145  Identities=21%  Similarity=0.231  Sum_probs=102.7

Q ss_pred             CCCCCCccCcHHHHHHHHHHHhc------------CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLKE------------GDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~~------------g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      +.+|++++|...+++.+...+..            ...++++|+||||||||++++++++....+               
T Consensus         2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~   81 (262)
T 2qz4_A            2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG   81 (262)
T ss_dssp             CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred             CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence            35789999999888888776521            112238999999999999999999887533               


Q ss_pred             -------------------EEEEeCCCCCCH------------HHHHH---HHHHHHhc--cCCcEEEEEeCCCCCCcHH
Q psy2281          63 -------------------VIILNETDHLTR------------EAQQA---LRRTMEKY--ITTCRLILCANSMSQVIPA  106 (287)
Q Consensus        63 -------------------~i~ide~d~l~~------------~~~~~---l~~~i~~~--~~~~~~i~~~~~~~~l~~~  106 (287)
                                         +++|||+|.+..            ..+..   +...++..  .....++.++|..+.+.++
T Consensus        82 ~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~  161 (262)
T 2qz4_A           82 LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGA  161 (262)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSG
T ss_pred             hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHH
Confidence                               899999998732            22223   33334332  2234566667777778888


Q ss_pred             Hhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHcCCc
Q psy2281         107 IRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-ALRLAQQSDRN  154 (287)
Q Consensus       107 l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~s~G~  154 (287)
                      +++  |+ ..+.++.|+.++..++++..++..++..+... ...++..+.|-
T Consensus       162 l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~  213 (262)
T 2qz4_A          162 LMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGF  213 (262)
T ss_dssp             GGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTC
T ss_pred             HhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCC
Confidence            888  88 56889999999999999999999888766553 47788777664

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.68  E-value=5.7e-16  Score=136.98  Aligned_cols=162  Identities=21%  Similarity=0.301  Sum_probs=126.6

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhc----CCCCcEEEeCCCCCcHHHHHHHHHHHh---------CCC--------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE----GDFPHLLFYGPSGAGKKTRIMALLKEL---------YGP--------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~----g~~~~~~l~Gp~G~GKTtl~~~l~~~~---------~~~--------   62 (287)
                      |..+|+|   ++++|+......+..++..    +..++++|+||+|+||||+++.+++.+         ...        
T Consensus        12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            4556777   7789999888888887743    334459999999999999999998765         100        


Q ss_pred             --------------------------------------------EEEEeCCCCCCHH--HHHHHHHHHHhc-----cCCc
Q psy2281          63 --------------------------------------------VIILNETDHLTRE--AQQALRRTMEKY-----ITTC   91 (287)
Q Consensus        63 --------------------------------------------~i~ide~d~l~~~--~~~~l~~~i~~~-----~~~~   91 (287)
                                                                  ++++||++.+...  .+..+...+...     ....
T Consensus        89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~  168 (387)
T 2v1u_A           89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWV  168 (387)
T ss_dssp             SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----C
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceE
Confidence                                                        8999999988665  566666666544     3345


Q ss_pred             EEEEEeCCC---CCCcHHHhccc--ceeecCCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHHcC---CcHHHHHHH
Q psy2281          92 RLILCANSM---SQVIPAIRSRC--LCIRIPAPTHEEIVSVLTNICKK--EGLTIPPEFALRLAQQSD---RNLRRAILM  161 (287)
Q Consensus        92 ~~i~~~~~~---~~l~~~l~sr~--~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~s~---G~~r~al~~  161 (287)
                      .++.+++..   +.+.+.+++|+  ..+.|++++.+++..++...+..  .+..+++++.+.+++.++   |+.|.+++.
T Consensus       169 ~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~  248 (387)
T 2v1u_A          169 SLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDL  248 (387)
T ss_dssp             EEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             EEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHH
Confidence            677777766   56888999999  57999999999999999998876  455678889999999998   999999999


Q ss_pred             HHHHhhc
Q psy2281         162 CEASKVQ  168 (287)
Q Consensus       162 l~~~~~~  168 (287)
                      +..+...
T Consensus       249 l~~a~~~  255 (387)
T 2v1u_A          249 LRVAGEI  255 (387)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.68  E-value=1e-19  Score=151.61  Aligned_cols=168  Identities=14%  Similarity=0.132  Sum_probs=119.6

Q ss_pred             HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHH
Q psy2281          29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAI  107 (287)
Q Consensus        29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l  107 (287)
                      .+.+|++  ++|.||||+|||||+++|++.+.+. .|.+++.+.- ......+++.+.+++|+..++...+..+++..+ 
T Consensus        22 ~i~~Ge~--~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~~g~~~~-~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~-   97 (249)
T 2qi9_C           22 EVRAGEI--LHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLE-AWSATKLALHRAYLSQQQTPPFATPVWHYLTLH-   97 (249)
T ss_dssp             EEETTCE--EEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGG-GSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTT-
T ss_pred             EEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCeEEEECCEECC-cCCHHHHhceEEEECCCCccCCCCcHHHHHHHh-
Confidence            3467888  9999999999999999999987653 6778875421 111233556677887776543222333333211 


Q ss_pred             hcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHH-------HhhcCCCcccc
Q psy2281         108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEA-------SKVQQYPFQID  175 (287)
Q Consensus       108 ~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~-------~~~~dep~~~~  175 (287)
                        +     ....+    .+.+..+++..|+  ++...+.+.++|+|+.||     |+...|.       ++++|||++++
T Consensus        98 --~-----~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~L  164 (249)
T 2qi9_C           98 --Q-----HDKTR----TELLNDVAGALAL--DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL  164 (249)
T ss_dssp             --C-----SSTTC----HHHHHHHHHHTTC--GGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTC
T ss_pred             --h-----ccCCc----HHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccC
Confidence              0     11112    3445667777777  444556678899999888     7777889       99999999999


Q ss_pred             cCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |+.....+.+.+.++.++    ++++|+.+.+..++|+++.+
T Consensus       165 D~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l  206 (249)
T 2qi9_C          165 DVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLL  206 (249)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            999999999999888654    77999999998888887644

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.68  E-value=1.4e-15  Score=129.30  Aligned_cols=162  Identities=22%  Similarity=0.306  Sum_probs=115.4

Q ss_pred             ccccCCCCCCCccCcHHHHHHHHHHHhc-------------CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281           5 VDKYRPNNLQKLDFHCKQANHLRNLLKE-------------GDFPHLLFYGPSGAGKKTRIMALLKELYGP---------   62 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~-------------g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------   62 (287)
                      .....+..|++++|...+++.+...+..             ....+++|+||||||||++++++++.+..+         
T Consensus         8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~   87 (285)
T 3h4m_A            8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL   87 (285)
T ss_dssp             EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred             ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence            3445567899999999998888877632             122339999999999999999999887543         


Q ss_pred             -------------------------EEEEeCCCCC-----------CHHHHHHHHHHHHhc-----cCCcEEEEEeCCCC
Q psy2281          63 -------------------------VIILNETDHL-----------TREAQQALRRTMEKY-----ITTCRLILCANSMS  101 (287)
Q Consensus        63 -------------------------~i~ide~d~l-----------~~~~~~~l~~~i~~~-----~~~~~~i~~~~~~~  101 (287)
                                               +++|||+|.+           ....+..+...+...     ..+..++.+++..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~  167 (285)
T 3h4m_A           88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPD  167 (285)
T ss_dssp             CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGG
T ss_pred             HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCch
Confidence                                     8999999876           334455555554432     22445667777777


Q ss_pred             CCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHhh
Q psy2281         102 QVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR----NLRRAILMCEASKV  167 (287)
Q Consensus       102 ~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~l~~~~~  167 (287)
                      .+.+++++  |+. .+.++.|+.++..++++..+...++. .+.....++..+.|    +++.++........
T Consensus       168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~  239 (285)
T 3h4m_A          168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAI  239 (285)
T ss_dssp             GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            89999988  774 68999999999999999888776653 22335667766665    55555554444443

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.67  E-value=1.2e-15  Score=131.12  Aligned_cols=152  Identities=19%  Similarity=0.298  Sum_probs=115.5

Q ss_pred             CccCcHHHHHHHHHHHhc-------------CC-CCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281          15 KLDFHCKQANHLRNLLKE-------------GD-FPHLLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~-------------g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      +++|+..++..+...+..             +. .++++|+||||+|||++++++++.+..+                  
T Consensus        16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~   95 (310)
T 1ofh_A           16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE   95 (310)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred             hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence            478999888888776643             22 3349999999999999999998876321                  


Q ss_pred             -----------------------EEEEeCCCCCCHHH------------HHHHHHHHHhc----------cCCcEEEEEe
Q psy2281          63 -----------------------VIILNETDHLTREA------------QQALRRTMEKY----------ITTCRLILCA   97 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~~~------------~~~l~~~i~~~----------~~~~~~i~~~   97 (287)
                                             ++++||+|.+....            ++.|++.++..          .....++.++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~  175 (310)
T 1ofh_A           96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASG  175 (310)
T ss_dssp             TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEE
T ss_pred             HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcC
Confidence                                   89999999886543            67788888853          1234455553


Q ss_pred             ----CCCCCCcHHHhcccc-eeecCCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHHc--------
Q psy2281          98 ----NSMSQVIPAIRSRCL-CIRIPAPTHEEIVSVLTN-----------ICKKEGL--TIPPEFALRLAQQS--------  151 (287)
Q Consensus        98 ----~~~~~l~~~l~sr~~-~~~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~s--------  151 (287)
                          +....+.+++.+||. .+.|++++.+++..++..           .+...+.  .+++++.+.+++.+        
T Consensus       176 ~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~  255 (310)
T 1ofh_A          176 AFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTE  255 (310)
T ss_dssp             CCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSC
T ss_pred             CcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccccc
Confidence                234568899999996 599999999999888872           2333453  57999999999988        


Q ss_pred             CCcHHHHHHHHHHHh
Q psy2281         152 DRNLRRAILMCEASK  166 (287)
Q Consensus       152 ~G~~r~al~~l~~~~  166 (287)
                      .|+.|.+.+.++.++
T Consensus       256 ~g~~R~l~~~l~~~~  270 (310)
T 1ofh_A          256 NIGARRLHTVMERLM  270 (310)
T ss_dssp             CCTTHHHHHHHHHHS
T ss_pred             ccCcHHHHHHHHHHH
Confidence            799999999988765

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.67  E-value=8.2e-16  Score=131.81  Aligned_cols=145  Identities=12%  Similarity=0.114  Sum_probs=111.1

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC--------C---------------------------------
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG--------P---------------------------------   62 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~--------~---------------------------------   62 (287)
                      ..|...+..+..++++|+||||||||++++.+++.+..        .                                 
T Consensus        34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~  113 (318)
T 3te6_A           34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGD  113 (318)
T ss_dssp             HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CC
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCch
Confidence            34555556677777999999999999999999887720        0                                 


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHhcc---CCcEEEEEeCCCCC----CcHHHhccc--c
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEKYI---TTCRLILCANSMSQ----VIPAIRSRC--L  112 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~---~~~~~i~~~~~~~~----l~~~l~sr~--~  112 (287)
                                           +|++||+|.+.  .|+.|...++...   ....+|.++|..+.    +.+.++||+  .
T Consensus       114 ~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~  191 (318)
T 3te6_A          114 ISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFT  191 (318)
T ss_dssp             CCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEE
T ss_pred             HHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCce
Confidence                                 89999999987  5666766665432   23456666777654    344568898  4


Q ss_pred             eeecCCCCHHHHHHHHHHHHHHhC-----------------------------------CCCCHHHHHHHHH---HcCCc
Q psy2281         113 CIRIPAPTHEEIVSVLTNICKKEG-----------------------------------LTIPPEFALRLAQ---QSDRN  154 (287)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~~~-----------------------------------~~~~~~~~~~l~~---~s~G~  154 (287)
                      .+.|++++.+++..+++..++...                                   +.+++++++.+++   .+.||
T Consensus       192 ~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD  271 (318)
T 3te6_A          192 EIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGS  271 (318)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCS
T ss_pred             EEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHHHHhhCCh
Confidence            699999999999999999887742                                   1368999999998   57999


Q ss_pred             HHHHHHHHHHHhhcCC
Q psy2281         155 LRRAILMCEASKVQQY  170 (287)
Q Consensus       155 ~r~al~~l~~~~~~de  170 (287)
                      +|+|+..+.......|
T Consensus       272 ~R~Al~ilr~A~~~ae  287 (318)
T 3te6_A          272 TEKAFKICEAAVEISK  287 (318)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998776543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.65  E-value=3.1e-20  Score=157.24  Aligned_cols=182  Identities=14%  Similarity=0.092  Sum_probs=121.1

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEEEEE--eCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT-REAQQALRRTMEKYITTCRLILC--ANS   99 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~i~~--~~~   99 (287)
                      .++..+++|++  ++|.||||||||||+++|++.+.+.  .|.+++.+.-. ......+++.+.+++|+..+.+.  .++
T Consensus        39 ~isl~i~~Ge~--~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv  116 (279)
T 2ihy_A           39 KISWQIAKGDK--WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERV  116 (279)
T ss_dssp             EEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBH
T ss_pred             eeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCH
Confidence            34444578888  9999999999999999999998766  78888865320 10112234446666655422111  122


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+++..+...+   ..+.....++..+.+.++++..|+  ++...+.+.++|+|+.||     |+...|+++++|||+++
T Consensus       117 ~enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~  191 (279)
T 2ihy_A          117 IDVVISGAFKS---IGVYQDIDDEIRNEAHQLLKLVGM--SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAG  191 (279)
T ss_dssp             HHHHHTTC------------CCHHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTT
T ss_pred             HHHHHhhhhhc---cccccCCcHHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccc
Confidence            23332211000   001111123445667778888887  455566788999999888     66777889999999999


Q ss_pred             ccCccCccHHHHHHHHHHH------HHhccChhHHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL------IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~------i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|+.....+.+.+.++.++      ++++|+.+.+..++|+++.+
T Consensus       192 LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l  236 (279)
T 2ihy_A          192 LDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLL  236 (279)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEE
T ss_pred             cCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEE
Confidence            9999999999999988764      46899999888888887644

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.65  E-value=2.9e-15  Score=130.95  Aligned_cols=162  Identities=15%  Similarity=0.127  Sum_probs=117.5

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC------------------------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG------------------------   61 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~------------------------   61 (287)
                      ..-+|.+|++++|+..++..+......+..++++|+||+|||||++++++++.+..                        
T Consensus        16 ~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (350)
T 1g8p_A           16 KTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVL   95 (350)
T ss_dssp             --CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCS
T ss_pred             CCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhh
Confidence            34567889999999887776655544333345999999999999999999876531                        


Q ss_pred             --------------------------------------------------CEEEEeCCCCCCHHHHHHHHHHHHhc----
Q psy2281          62 --------------------------------------------------PVIILNETDHLTREAQQALRRTMEKY----   87 (287)
Q Consensus        62 --------------------------------------------------~~i~ide~d~l~~~~~~~l~~~i~~~----   87 (287)
                                                                        .+++|||++.++...++.|++.++.-    
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~  175 (350)
T 1g8p_A           96 STNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVV  175 (350)
T ss_dssp             CCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred             ccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEE
Confidence                                                              18999999999999999999988862    


Q ss_pred             ---------cCCcEEEEEeCCCC-CCcHHHhcccce-eecCCCC-HHHHHHHHHHH------------------------
Q psy2281          88 ---------ITTCRLILCANSMS-QVIPAIRSRCLC-IRIPAPT-HEEIVSVLTNI------------------------  131 (287)
Q Consensus        88 ---------~~~~~~i~~~~~~~-~l~~~l~sr~~~-~~~~~~~-~~~~~~~l~~~------------------------  131 (287)
                               +.+..++.++|..+ .+.+++.+||.. +.+++++ .++...++...                        
T Consensus       176 ~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (350)
T 1g8p_A          176 ERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQ  255 (350)
T ss_dssp             CCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             EecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHH
Confidence                     12344555555434 789999999975 8898884 44443444331                        


Q ss_pred             -----HHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHHHHHhh
Q psy2281         132 -----CKKEGLTIPPEFALRLAQQSDR----NLRRAILMCEASKV  167 (287)
Q Consensus       132 -----~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~l~~~~~  167 (287)
                           ....++.+++++.+++.+.+.+    +.|.+.+.+..+..
T Consensus       256 i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~  300 (350)
T 1g8p_A          256 ILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARA  300 (350)
T ss_dssp             HHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHH
Confidence                 1223457799999999988776    78988877765443

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.1e-14  Score=129.86  Aligned_cols=155  Identities=19%  Similarity=0.249  Sum_probs=111.7

Q ss_pred             CCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      ..+|+++.|..++++.|...+.           -|-.|+  ++||||||||||++++++|++...+              
T Consensus       177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~  256 (437)
T 4b4t_L          177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYI  256 (437)
T ss_dssp             SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSS
T ss_pred             CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccc
Confidence            4579999999988888877761           243333  9999999999999999999998654              


Q ss_pred             --------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC--CcEEEEEeCCCCCCcHH
Q psy2281          63 --------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT--TCRLILCANSMSQVIPA  106 (287)
Q Consensus        63 --------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~--~~~~i~~~~~~~~l~~~  106 (287)
                                          +|||||+|.+..           .   ....|+..|+....  +..+|.++|.++.++++
T Consensus       257 Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpA  336 (437)
T 4b4t_L          257 GESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPA  336 (437)
T ss_dssp             SHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTT
T ss_pred             hHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHH
Confidence                                999999997631           1   23345666665433  34577788888999999


Q ss_pred             Hhcc--c-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHHHHHHH
Q psy2281         107 IRSR--C-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRRAILMCEAS  165 (287)
Q Consensus       107 l~sr--~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~al~~l~~~  165 (287)
                      ++++  + ..+.|+.|+.++..++++..+....+. ++..+..+++.+    |.|++.++......
T Consensus       337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~  401 (437)
T 4b4t_L          337 LLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFF  401 (437)
T ss_dssp             TTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHH
T ss_pred             HhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            9875  4 358899999999999999888776542 222356666654    44777655544333

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.65  E-value=7.6e-15  Score=129.35  Aligned_cols=158  Identities=17%  Similarity=0.246  Sum_probs=112.4

Q ss_pred             ccccCCCCCCCccCcHHHHHHHHHHHh-----------cCCCC-c-EEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281           5 VDKYRPNNLQKLDFHCKQANHLRNLLK-----------EGDFP-H-LLFYGPSGAGKKTRIMALLKELYGP---------   62 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~-~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------   62 (287)
                      +++-...+|+++.|..++++.|+..+.           -|-.| . ++|+||||||||++++++|++...+         
T Consensus       173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l  252 (437)
T 4b4t_I          173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL  252 (437)
T ss_dssp             EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred             eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence            344455689999999998888877661           23333 3 9999999999999999999988644         


Q ss_pred             -------------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC--CcEEEEEeCCCC
Q psy2281          63 -------------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT--TCRLILCANSMS  101 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~--~~~~i~~~~~~~  101 (287)
                                               +|+|||+|.+..           .   ....++..++....  +..+|.++|.++
T Consensus       253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd  332 (437)
T 4b4t_I          253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIE  332 (437)
T ss_dssp             CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCST
T ss_pred             hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChh
Confidence                                     999999997631           1   22345555554432  335677788889


Q ss_pred             CCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHHHHH
Q psy2281         102 QVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ----SDRNLRRAILMCE  163 (287)
Q Consensus       102 ~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----s~G~~r~al~~l~  163 (287)
                      .+++++++  |+. .+.|+.|+.++..++++..+++..+. ++..++.+++.    ||.|++.++....
T Consensus       333 ~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~  400 (437)
T 4b4t_I          333 TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAG  400 (437)
T ss_dssp             TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred             hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            99999987  773 58899999999999999888776553 12235566654    4557766554443

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1.4e-14  Score=128.85  Aligned_cols=153  Identities=18%  Similarity=0.235  Sum_probs=108.6

Q ss_pred             CCCCCCCccCcHHHHHHHHHHH-----------hcCC-CCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281           9 RPNNLQKLDFHCKQANHLRNLL-----------KEGD-FPH-LLFYGPSGAGKKTRIMALLKELYGP-------------   62 (287)
Q Consensus         9 ~p~~~~~~~~~~~~~~~l~~~~-----------~~g~-~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------   62 (287)
                      ..-+|+++.|..++++.|+..+           .-|- .|. ++|+||||||||++++++|++...+             
T Consensus       204 P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~  283 (467)
T 4b4t_H          204 PDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKY  283 (467)
T ss_dssp             CSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCS
T ss_pred             CCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhccc
Confidence            3468999999999988888765           1243 333 9999999999999999999988654             


Q ss_pred             ---------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC--CcEEEEEeCCCCCCcH
Q psy2281          63 ---------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT--TCRLILCANSMSQVIP  105 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~--~~~~i~~~~~~~~l~~  105 (287)
                                           +|++||+|.+..           .   ....++..|+....  ...++.++|.++.+.+
T Consensus       284 vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDp  363 (467)
T 4b4t_H          284 VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDP  363 (467)
T ss_dssp             SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCH
T ss_pred             CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCCh
Confidence                                 999999997631           1   12334445554332  2345667777889999


Q ss_pred             HHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHHH
Q psy2281         106 AIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR----NLRRAILMC  162 (287)
Q Consensus       106 ~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~l  162 (287)
                      ++++  |+ ..+.|+.|+.+++.++++..++...+. .+..++.+++.+.|    |++.++...
T Consensus       364 ALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA  426 (467)
T 4b4t_H          364 ALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEA  426 (467)
T ss_dssp             HHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred             hhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence            9987  78 468999999999999998888766553 12235566665544    666654443

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.63  E-value=1.9e-15  Score=130.11  Aligned_cols=153  Identities=15%  Similarity=0.184  Sum_probs=117.2

Q ss_pred             CCccCcHHHHHHHHHHHhcCC--------CC-cEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281          14 QKLDFHCKQANHLRNLLKEGD--------FP-HLLFYGPSGAGKKTRIMALLKELYGP----------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~g~--------~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------   62 (287)
                      ++++|+..+++.+...+..+.        .. +++|+|||||||||+++++++.+...                      
T Consensus        17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~   96 (311)
T 4fcw_A           17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI   96 (311)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHH
T ss_pred             hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhc
Confidence            357899998888888875431        12 39999999999999999999876211                      


Q ss_pred             -------------------------EEEEeCCCCCCHHHHHHHHHHHHhcc-----------CCcEEEEEeCC-------
Q psy2281          63 -------------------------VIILNETDHLTREAQQALRRTMEKYI-----------TTCRLILCANS-------   99 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~-----------~~~~~i~~~~~-------   99 (287)
                                               ++++||++.++...++.|++.++...           .++.+|+++|.       
T Consensus        97 g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~  176 (311)
T 4fcw_A           97 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILE  176 (311)
T ss_dssp             CCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHT
T ss_pred             CCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHh
Confidence                                     89999999999999999999998643           24447777776       


Q ss_pred             -------------------CCCCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Q psy2281         100 -------------------MSQVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQ  150 (287)
Q Consensus       100 -------------------~~~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~  150 (287)
                                         ...+.+++.+|| .++.|.+++.+++..++...+++.         .+.+++++.+.+.+.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  256 (311)
T 4fcw_A          177 GLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAER  256 (311)
T ss_dssp             TTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHh
Confidence                               235778899999 578899999999999888876653         345689999999987


Q ss_pred             cC---CcHHHHHHHHHHHh
Q psy2281         151 SD---RNLRRAILMCEASK  166 (287)
Q Consensus       151 s~---G~~r~al~~l~~~~  166 (287)
                      +-   |+.|..-+.++.++
T Consensus       257 ~~~~~gn~R~L~~~i~~~~  275 (311)
T 4fcw_A          257 GYDPVFGARPLRRVIQREL  275 (311)
T ss_dssp             SCBTTTBTTTHHHHHHHHT
T ss_pred             CCCccCCchhHHHHHHHHH
Confidence            54   77776555555443

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.63  E-value=4.7e-15  Score=132.00  Aligned_cols=155  Identities=21%  Similarity=0.294  Sum_probs=110.0

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHH-----------hcCCC-Cc-EEEeCCCCCcHHHHHHHHHHHhCCC----------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLL-----------KEGDF-PH-LLFYGPSGAGKKTRIMALLKELYGP----------   62 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~-----------~~g~~-~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------   62 (287)
                      ++-.+.+|+++.|...+++.|...+           .-|-. |. ++||||||||||++++++|++...+          
T Consensus       173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~  252 (434)
T 4b4t_M          173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLV  252 (434)
T ss_dssp             ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGC
T ss_pred             CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhh
Confidence            3344568999999999988887765           12433 32 9999999999999999999998654          


Q ss_pred             ------------------------EEEEeCCCCCC-----------HHH---HHHHHHHHHhccCC--cEEEEEeCCCCC
Q psy2281          63 ------------------------VIILNETDHLT-----------REA---QQALRRTMEKYITT--CRLILCANSMSQ  102 (287)
Q Consensus        63 ------------------------~i~ide~d~l~-----------~~~---~~~l~~~i~~~~~~--~~~i~~~~~~~~  102 (287)
                                              +|+|||+|.+.           ...   ...|+..|+.....  ..++.++|.++.
T Consensus       253 ~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~  332 (434)
T 4b4t_M          253 QMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV  332 (434)
T ss_dssp             SSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred             hcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence                                    99999998641           111   23455566655332  345567777889


Q ss_pred             CcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc----CCcHHHHHHH
Q psy2281         103 VIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQS----DRNLRRAILM  161 (287)
Q Consensus       103 l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s----~G~~r~al~~  161 (287)
                      +++++++  |+ ..+.|+.|+.++..++++..+++..+. ++..++.+++.+    |.|++.++..
T Consensus       333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~e  397 (434)
T 4b4t_M          333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVE  397 (434)
T ss_dssp             CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHH
T ss_pred             cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999977  77 468999999999999999888876653 111255566554    4466665544

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.63  E-value=1.3e-18  Score=145.27  Aligned_cols=181  Identities=11%  Similarity=0.025  Sum_probs=116.1

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH--hCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE--LYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~--~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      ++..+++|++  +.|.||||+|||||+++|++.  ..+.  .|.+++.+.-........+..+.+++|+..++...+..+
T Consensus        22 vsl~i~~Ge~--~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e   99 (250)
T 2d2e_A           22 VNLVVPKGEV--HALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIAN   99 (250)
T ss_dssp             EEEEEETTCE--EEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHH
T ss_pred             eEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHH
Confidence            3444578888  999999999999999999997  3332  788887553211111111223556677765544334444


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-HcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ-QSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      ++..+.....    -......+..+.+.++++..|+. ++...+.+.+ +|+|+.||     |+...|+++++|||++++
T Consensus       100 ~l~~~~~~~~----~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L  174 (250)
T 2d2e_A          100 FLRLALQAKL----GREVGVAEFWTKVKKALELLDWD-ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL  174 (250)
T ss_dssp             HHHHHHHHHH----TSCCCHHHHHHHHHHHHHHHTCC-GGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTT
T ss_pred             HHHHHHHhhc----cccCCHHHHHHHHHHHHHHcCCC-hhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence            4433221100    00123344556677788888872 1223445667 99999988     777778999999999999


Q ss_pred             cCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL  213 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l  213 (287)
                      |+.....+.+.+.++.+.    ++++|+...+..+ +|+++.+
T Consensus       175 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l  217 (250)
T 2d2e_A          175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVM  217 (250)
T ss_dssp             CHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence            999988888888887543    7799999888776 4776543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.63  E-value=6.6e-16  Score=122.93  Aligned_cols=124  Identities=12%  Similarity=0.212  Sum_probs=98.4

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------C-----------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------P-----------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------~-----------   62 (287)
                      +|.++|+|..+++++|+......+...+..+..++++|+||+|+|||++++++++.+..         .           
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (195)
T 1jbk_A           11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV   90 (195)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH
T ss_pred             HHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh
Confidence            58899999999999999999999988887776666999999999999999999887521         0           


Q ss_pred             ---------------------------EEEEeCCCCCCHH--------HHHHHHHHHHhccCCcEEEEEeCCCC-----C
Q psy2281          63 ---------------------------VIILNETDHLTRE--------AQQALRRTMEKYITTCRLILCANSMS-----Q  102 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~~~--------~~~~l~~~i~~~~~~~~~i~~~~~~~-----~  102 (287)
                                                 +++|||++.+...        .++.+...++.  .+..++.+++..+     .
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~  168 (195)
T 1jbk_A           91 AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIE  168 (195)
T ss_dssp             TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTT
T ss_pred             ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHh
Confidence                                       7999999987532        24455555543  3456777777654     5


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHH
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVL  128 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l  128 (287)
                      +.+++++||..+.+.+|+.++..+++
T Consensus       169 ~~~~l~~r~~~i~~~~p~~~~~~~il  194 (195)
T 1jbk_A          169 KDAALERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             TCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred             cCHHHHHHhceeecCCCCHHHHHHHh
Confidence            78999999988999999988876543

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.62  E-value=4.8e-19  Score=147.98  Aligned_cols=168  Identities=15%  Similarity=0.075  Sum_probs=115.8

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|++  +.|.||||+|||||++++++.+.+.  .|.              +++.+.+++|+..++...+..++
T Consensus        23 ~isl~i~~Ge~--~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~--------------~~~~i~~v~q~~~~~~~~tv~en   86 (253)
T 2nq2_C           23 QLNFDLNKGDI--LAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VYQSIGFVPQFFSSPFAYSVLDI   86 (253)
T ss_dssp             EEEEEEETTCE--EEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------------ECSCEEEECSCCCCSSCCBHHHH
T ss_pred             EEEEEECCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------------EeccEEEEcCCCccCCCCCHHHH
Confidence            33444578888  9999999999999999999988765  333              11235555555443322333344


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +..+...+...  +.... .+..+.+..+++..|+  ++...+.+.++|+|+.||     |+...|+++++|||++++|+
T Consensus        87 l~~~~~~~~~~--~~~~~-~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~  161 (253)
T 2nq2_C           87 VLMGRSTHINT--FAKPK-SHDYQVAMQALDYLNL--THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL  161 (253)
T ss_dssp             HHGGGGGGSCT--TCCCC-HHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH
T ss_pred             HHHhhhhhccc--ccCCC-HHHHHHHHHHHHHcCC--hHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            33221100000  00112 2334566777888787  444556678999999888     77777899999999999999


Q ss_pred             ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .....+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       162 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l  202 (253)
T 2nq2_C          162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLL  202 (253)
T ss_dssp             HHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence            9999999999888763     77999999999888887644

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.62  E-value=5.4e-15  Score=142.03  Aligned_cols=157  Identities=15%  Similarity=0.215  Sum_probs=119.0

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh----------CCC----------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL----------YGP----------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~----------~~~----------   62 (287)
                      .|.+++||..+++++|+...+..+...+..+..+|++|+||||||||+++++++..+          ...          
T Consensus       169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~  248 (758)
T 3pxi_A          169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKY  248 (758)
T ss_dssp             BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------
T ss_pred             HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccc
Confidence            588999999999999999999999999887777789999999999999999999886          110          


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHHHhcccceeec
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS-----QVIPAIRSRCLCIRI  116 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~l~sr~~~~~~  116 (287)
                                           ++++|    ...+.++.|+..++  .....+|.++|..+     .+.+++++||..+.|
T Consensus       249 ~G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v  322 (758)
T 3pxi_A          249 RGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQV  322 (758)
T ss_dssp             ----CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEEC
T ss_pred             cchHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEe
Confidence                                 67777    22334555555555  23456677776666     588999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHH
Q psy2281         117 PAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRNL------RRAILMCEAS  165 (287)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~~------r~al~~l~~~  165 (287)
                      +.|+.++...++..++..    .++.+++.++..+++++.+.+      .+++..+...
T Consensus       323 ~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a  381 (758)
T 3pxi_A          323 DQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA  381 (758)
T ss_dssp             CCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHH
Confidence            999999999999977665    577889999999988765432      3466555543

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.61  E-value=1.6e-19  Score=152.11  Aligned_cols=186  Identities=10%  Similarity=-0.044  Sum_probs=117.4

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh--CCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL--YGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~--~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      .++..+++|++  ++|.||||||||||+++|++..  .+.  .|.+++.+.-........+..+.+++|+..++...+..
T Consensus        38 ~vsl~i~~Ge~--~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~  115 (267)
T 2zu0_C           38 GLSLDVHPGEV--HAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQ  115 (267)
T ss_dssp             EEEEEECTTCE--EEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHH
T ss_pred             eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccHH
Confidence            34444578888  9999999999999999999974  222  78888755311111111122355666665443222222


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH-HHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA-QQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      +++................+.++..+.+.++++..|+. +....+.+. ++|+|+.||     |+...|+++++|||+++
T Consensus       116 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~  194 (267)
T 2zu0_C          116 FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP-EDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG  194 (267)
T ss_dssp             HHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC-TTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred             HHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC-hhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence            33322211000000111234555566778888888873 112233444 499999888     77777899999999999


Q ss_pred             ccCccCccHHHHHHHHHHH----HHhccChhHHHHH-HHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEV-RTRLYEL  213 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~-~~~~~~l  213 (287)
                      +|+.....+.+.+.++.+.    ++++|+.+.+..+ +|+++.+
T Consensus       195 LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l  238 (267)
T 2zu0_C          195 LDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL  238 (267)
T ss_dssp             CCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence            9999888888888777543    7799999887765 6776543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.60  E-value=1.8e-18  Score=147.91  Aligned_cols=169  Identities=15%  Similarity=0.134  Sum_probs=117.3

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|+.  +.|+||||||||||+++|++.+.+.  .|.+|+.+.-.. ....+++.+.+++|++.++ ..+..+|
T Consensus        72 ~isl~i~~Ge~--vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~-~~~~~r~~i~~v~Q~~~lf-~~Tv~eN  147 (306)
T 3nh6_A           72 DVSFTVMPGQT--LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV-TQASLRSHIGVVPQDTVLF-NDTIADN  147 (306)
T ss_dssp             EEEEEECTTCE--EEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB-CHHHHHHTEEEECSSCCCC-SEEHHHH
T ss_pred             eeeEEEcCCCE--EEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC-CHHHHhcceEEEecCCccC-cccHHHH
Confidence            34444578888  9999999999999999999998776  788898664221 2345677899999987554 3345555


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH-----------HHHHcCCcHHH-----HHHHHHHHh
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-----------LAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +..+.         ...+.+++    ...++..++  .+.....           ..++|+|+.||     |+...+.++
T Consensus       148 i~~~~---------~~~~~~~~----~~~~~~~~l--~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL  212 (306)
T 3nh6_A          148 IRYGR---------VTAGNDEV----EAAAQAAGI--HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII  212 (306)
T ss_dssp             HHTTS---------TTCCHHHH----HHHHHHHTC--HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred             HHhhc---------ccCCHHHH----HHHHHHhCc--HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE
Confidence            43321         12233333    333444444  2222111           13588888877     777778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|+.....+.+.+.++.+.   |+++|+...+.. +|+++.+
T Consensus       213 lLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl  261 (306)
T 3nh6_A          213 LLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVI  261 (306)
T ss_dssp             EEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEE
T ss_pred             EEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEE
Confidence            999999999999888888888877544   779999998876 7877644

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.59  E-value=3.9e-14  Score=126.00  Aligned_cols=152  Identities=20%  Similarity=0.281  Sum_probs=107.9

Q ss_pred             CCCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      ..+|+++.|...+++.|...+.           -|-.|+  ++|+||||||||++++++|+.+..+              
T Consensus       168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~  247 (428)
T 4b4t_K          168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYL  247 (428)
T ss_dssp             SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSC
T ss_pred             CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcccc
Confidence            3579999999988888877661           243333  9999999999999999999988644              


Q ss_pred             --------------------EEEEeCCCCCC--------------HHHHHHHHHHHHhccC--CcEEEEEeCCCCCCcHH
Q psy2281          63 --------------------VIILNETDHLT--------------REAQQALRRTMEKYIT--TCRLILCANSMSQVIPA  106 (287)
Q Consensus        63 --------------------~i~ide~d~l~--------------~~~~~~l~~~i~~~~~--~~~~i~~~~~~~~l~~~  106 (287)
                                          ++++||+|.+.              ......|+..|+....  +..+|.++|.++.++++
T Consensus       248 Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~A  327 (428)
T 4b4t_K          248 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPA  327 (428)
T ss_dssp             SHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHH
T ss_pred             chhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChh
Confidence                                99999998531              1123456666665433  33566778888999999


Q ss_pred             Hhc--ccc-eeecC-CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH----cCCcHHHHHHHH
Q psy2281         107 IRS--RCL-CIRIP-APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQ----SDRNLRRAILMC  162 (287)
Q Consensus       107 l~s--r~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----s~G~~r~al~~l  162 (287)
                      +++  |+. .+.|+ .|+.++...+++..+++..+. ++..++.++..    ||.|++..+...
T Consensus       328 llRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA  390 (428)
T 4b4t_K          328 LLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEA  390 (428)
T ss_dssp             HHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             hhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHH
Confidence            987  664 58885 678888888998888776652 22235566654    444666655443

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.59  E-value=6.6e-15  Score=135.92  Aligned_cols=144  Identities=21%  Similarity=0.269  Sum_probs=102.4

Q ss_pred             CccCcHHHHHHHHHHH------hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------------
Q psy2281          15 KLDFHCKQANHLRNLL------KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~------~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------------   62 (287)
                      +++|...++..+...+      .....++++|+|||||||||+++++++.+..+                          
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~  161 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM  161 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence            3677777776665443      12222349999999999999999999887432                          


Q ss_pred             ----------------EEEEeCCCCCCHHH----HHHHHHHHHhcc---------------CCcEEEEEeCCCCCCcHHH
Q psy2281          63 ----------------VIILNETDHLTREA----QQALRRTMEKYI---------------TTCRLILCANSMSQVIPAI  107 (287)
Q Consensus        63 ----------------~i~ide~d~l~~~~----~~~l~~~i~~~~---------------~~~~~i~~~~~~~~l~~~l  107 (287)
                                      ++++||++.+....    ++.|++.++...               .+..++.++|..+.+.+++
T Consensus       162 ~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL  241 (543)
T 3m6a_A          162 PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL  241 (543)
T ss_dssp             --CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHH
T ss_pred             chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHH
Confidence                            88999999988763    466666665321               3456777778888899999


Q ss_pred             hcccceeecCCCCHHHHHHHHHHHH-----HHh-----CCCCCHHHHHHHHHHcC--CcHHHH
Q psy2281         108 RSRCLCIRIPAPTHEEIVSVLTNIC-----KKE-----GLTIPPEFALRLAQQSD--RNLRRA  158 (287)
Q Consensus       108 ~sr~~~~~~~~~~~~~~~~~l~~~~-----~~~-----~~~~~~~~~~~l~~~s~--G~~r~a  158 (287)
                      ++||.++.|+.++.++...++...+     +..     ++.++++++..+.+...  |+.|..
T Consensus       242 ~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L  304 (543)
T 3m6a_A          242 RDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSL  304 (543)
T ss_dssp             HHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHH
T ss_pred             HhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHH
Confidence            9999999999999999988887755     233     34568888888776433  455553

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.58  E-value=4.6e-15  Score=144.10  Aligned_cols=161  Identities=19%  Similarity=0.248  Sum_probs=118.8

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----------CC----------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----------GP----------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------~~----------   62 (287)
                      .|.+++||..|++++|+...+..+...+..+..++++|+||||+||||+++++++.+.          ..          
T Consensus       159 ~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~  238 (854)
T 1qvr_A          159 DLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL  238 (854)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----
T ss_pred             hHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh
Confidence            5889999999999999999988888888777777799999999999999999998761          11          


Q ss_pred             ---------------------------EEEEeCCCCCC--------HHHHHHHHHHHHhccCCcEEEEEeCCCC----CC
Q psy2281          63 ---------------------------VIILNETDHLT--------REAQQALRRTMEKYITTCRLILCANSMS----QV  103 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~--------~~~~~~l~~~i~~~~~~~~~i~~~~~~~----~l  103 (287)
                                                 +++|||++.+.        .+..+.+...++.  ....+|.+++..+    .+
T Consensus       239 ~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~~~~~~~~~~  316 (854)
T 1qvr_A          239 AGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEK  316 (854)
T ss_dssp             -------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTT
T ss_pred             ccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecCchHHhhhcc
Confidence                                       88899999876        2234456666653  2345666666543    36


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCc------HHHHHHHHHHH
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDRN------LRRAILMCEAS  165 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G~------~r~al~~l~~~  165 (287)
                      .+++.+||..+.++.|+.++...+++.++..    .++.++++++..+++++.|.      ..+++..++..
T Consensus       317 d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea  388 (854)
T 1qvr_A          317 DPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEA  388 (854)
T ss_dssp             CTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHH
T ss_pred             CHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHH
Confidence            7889999999999999999999999877664    37778999999999887543      34455555443

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.58  E-value=6.9e-18  Score=140.52  Aligned_cols=169  Identities=16%  Similarity=0.115  Sum_probs=113.0

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|++  ++|.||||||||||+++|++.+.+.  .|.+++.+.-.. ....+++.+.+++|+..++. .+..++
T Consensus        27 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~-~~~~~~~~i~~v~Q~~~l~~-~tv~en  102 (247)
T 2ff7_A           27 NINLSIKQGEV--IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA-DPNWLRRQVGVVLQDNVLLN-RSIIDN  102 (247)
T ss_dssp             EEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS-CHHHHHHHEEEECSSCCCTT-SBHHHH
T ss_pred             eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC-CHHHHHhcEEEEeCCCcccc-ccHHHH
Confidence            34444578888  9999999999999999999998766  788888653211 12235566888887764431 233333


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHH-----------HHHHHcCCcHHH-----HHHHHHHHh
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-----------RLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +..+         ....+.+    .+...++..++  .+...+           ...++|+|+.||     |+...|+++
T Consensus       103 l~~~---------~~~~~~~----~~~~~l~~~~l--~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ll  167 (247)
T 2ff7_A          103 ISLA---------NPGMSVE----KVIYAAKLAGA--HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKIL  167 (247)
T ss_dssp             HTTT---------CTTCCHH----HHHHHHHHHTC--HHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             Hhcc---------CCCCCHH----HHHHHHHHhCh--HHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence            3221         0112332    23344555565  222221           235799998888     666668899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|+.....+.+.+.++.+.   |+++|+...+.. +|+++.+
T Consensus       168 lLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~-~d~v~~l  216 (247)
T 2ff7_A          168 IFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN-ADRIIVM  216 (247)
T ss_dssp             EECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT-SSEEEEE
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEE
Confidence            999999999999998888888887432   779999887754 7776543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.58  E-value=2.3e-14  Score=122.90  Aligned_cols=133  Identities=23%  Similarity=0.320  Sum_probs=102.1

Q ss_pred             ccccCCCCCCCccCcHHHHHHHHHHHhc-----------C-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281           5 VDKYRPNNLQKLDFHCKQANHLRNLLKE-----------G-DFPH-LLFYGPSGAGKKTRIMALLKELYGP---------   62 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------   62 (287)
                      ..+..+.+|+++.|...+++.+...+..           | ..+. ++|+||||||||++++++++....+         
T Consensus         6 ~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l   85 (301)
T 3cf0_A            6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL   85 (301)
T ss_dssp             CEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred             cccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHH
Confidence            3456778999999999998888877632           2 2222 9999999999999999999876432         


Q ss_pred             -------------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhcc--CCcEEEEEeCCCC
Q psy2281          63 -------------------------VIILNETDHLTRE--------------AQQALRRTMEKYI--TTCRLILCANSMS  101 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~--~~~~~i~~~~~~~  101 (287)
                                               ++++||+|.+...              .+..++..++...  .+..++.++|..+
T Consensus        86 ~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~  165 (301)
T 3cf0_A           86 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPD  165 (301)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGG
T ss_pred             HhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCcc
Confidence                                     8999999976433              2466777777542  2456677777777


Q ss_pred             CCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCC
Q psy2281         102 QVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGL  137 (287)
Q Consensus       102 ~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~  137 (287)
                      .+.+++++  |+. .+.++.|+.++..++++..++..++
T Consensus       166 ~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~  204 (301)
T 3cf0_A          166 IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV  204 (301)
T ss_dssp             GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB
T ss_pred             ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC
Confidence            88888887  784 6889999999999999988877665

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.57  E-value=3.2e-14  Score=125.59  Aligned_cols=162  Identities=22%  Similarity=0.284  Sum_probs=120.1

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhc---CC-CCcEEEeCCCCCcHHHHHHHHHHHh------CCC-----------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE---GD-FPHLLFYGPSGAGKKTRIMALLKEL------YGP-----------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~---g~-~~~~~l~Gp~G~GKTtl~~~l~~~~------~~~-----------   62 (287)
                      |..+|+|   ++++|.....+.+...+..   +. ..+++|+||+|+||||+++.+++.+      ...           
T Consensus        13 l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~   89 (386)
T 2qby_A           13 LLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT   89 (386)
T ss_dssp             GSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred             CCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence            4556777   6789999888888887753   33 3349999999999999999998755      111           


Q ss_pred             -----------------------------------------EEEEeCCCCCCH----HHHHHHHHHHHhc-cCCcEEEEE
Q psy2281          63 -----------------------------------------VIILNETDHLTR----EAQQALRRTMEKY-ITTCRLILC   96 (287)
Q Consensus        63 -----------------------------------------~i~ide~d~l~~----~~~~~l~~~i~~~-~~~~~~i~~   96 (287)
                                                               ++++||++.+..    .....+.+.++.. ..+..++++
T Consensus        90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~  169 (386)
T 2qby_A           90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGI  169 (386)
T ss_dssp             HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEE
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEE
Confidence                                                     789999887542    2344455555432 234556777


Q ss_pred             eCCC---CCCcHHHhccc--ceeecCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHcC---CcHHHHHHHHHHHh
Q psy2281          97 ANSM---SQVIPAIRSRC--LCIRIPAPTHEEIVSVLTNICKKEG--LTIPPEFALRLAQQSD---RNLRRAILMCEASK  166 (287)
Q Consensus        97 ~~~~---~~l~~~l~sr~--~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~s~---G~~r~al~~l~~~~  166 (287)
                      ++..   +.+.+.+++|+  ..+.|++++.+++.+++...+....  ..+++++.+.+++.++   |+.|.++..+....
T Consensus       170 ~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~  249 (386)
T 2qby_A          170 TNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSG  249 (386)
T ss_dssp             ESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            7665   35777889999  5799999999999999998876532  4568999999999998   99999998887765


Q ss_pred             hc
Q psy2281         167 VQ  168 (287)
Q Consensus       167 ~~  168 (287)
                      ..
T Consensus       250 ~~  251 (386)
T 2qby_A          250 EI  251 (386)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.57  E-value=3e-15  Score=118.69  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=90.7

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----------C----------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----------P----------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----------~----------   62 (287)
                      .|.++|+|..+++++|+......+...+..+..++++|+||+|+||||+++++++.+..          .          
T Consensus        11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (187)
T 2p65_A           11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLI   90 (187)
T ss_dssp             EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHH
T ss_pred             HHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhh
Confidence            58899999999999999999888888887766667999999999999999999987621          1          


Q ss_pred             ---------------------------EEEEeCCCCCC---------HHHHHHHHHHHHhccCCcEEEEEeCCCC-----
Q psy2281          63 ---------------------------VIILNETDHLT---------REAQQALRRTMEKYITTCRLILCANSMS-----  101 (287)
Q Consensus        63 ---------------------------~i~ide~d~l~---------~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----  101 (287)
                                                 +++|||++.+.         ....+.+...++.  ....++.+++..+     
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii~~~~~~~~~~~~  168 (187)
T 2p65_A           91 AGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCIGATTVSEYRQFI  168 (187)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEEEEECHHHHHHHT
T ss_pred             cCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEEEecCHHHHHHHH
Confidence                                       88999999875         2334455555543  3455677666543     


Q ss_pred             CCcHHHhcccceeecCCCC
Q psy2281         102 QVIPAIRSRCLCIRIPAPT  120 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~  120 (287)
                      .+.+++++||..+.+..|+
T Consensus       169 ~~~~~l~~R~~~i~i~~p~  187 (187)
T 2p65_A          169 EKDKALERRFQQILVEQPS  187 (187)
T ss_dssp             TTCHHHHHHEEEEECCSCC
T ss_pred             hccHHHHHhcCcccCCCCC
Confidence            5789999999888887664

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.56  E-value=1.8e-18  Score=146.02  Aligned_cols=177  Identities=14%  Similarity=0.052  Sum_probs=114.4

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|++  ++|.||||||||||+++|++.+.+.  .|.+++.+.-. .....+++.+.+++|+..++. .+..+
T Consensus        36 ~~vsl~i~~Ge~--~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~e  111 (271)
T 2ixe_A           36 QGLTFTLYPGKV--TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ-YDHHYLHTQVAAVGQEPLLFG-RSFRE  111 (271)
T ss_dssp             EEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-BCHHHHHHHEEEECSSCCCCS-SBHHH
T ss_pred             EeeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEccc-CCHHHHhccEEEEecCCcccc-ccHHH
Confidence            334444578888  9999999999999999999998766  78888865311 112235667888888765432 23334


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHH-----HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVS-----VLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      ++..+..       . ....++...     .+...++..+..++....+.+.++|+|+.||     |+...|.++++|||
T Consensus       112 nl~~~~~-------~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEP  183 (271)
T 2ixe_A          112 NIAYGLT-------R-TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNA  183 (271)
T ss_dssp             HHHTTCS-------S-CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred             HHhhhcc-------c-CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence            4322110       0 011122211     1223333331111222234566899998888     66666889999999


Q ss_pred             cccccCccCccHHHHHHHHHH--H---HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAK--L---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~--~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|+.....+.+.+.++.+  .   |+++|+...+.. +|+++.+
T Consensus       184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~-~d~v~~l  229 (271)
T 2ixe_A          184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER-AHHILFL  229 (271)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT-CSEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh-CCEEEEE
Confidence            999999998888888888754  2   779999887764 7776644

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.55  E-value=2.5e-17  Score=153.50  Aligned_cols=175  Identities=14%  Similarity=0.095  Sum_probs=122.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+.++..+++|+.  +.+.||||+||||+++++++...+.  .|.+|+.+. .......+++.+.+++|++.++. .+.
T Consensus       358 ~l~~i~l~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~-~~~~~~~~~~~i~~v~Q~~~l~~-~tv  433 (582)
T 3b5x_A          358 ALSHVSFSIPQGKT--VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV-RDYKLTNLRRHFALVSQNVHLFN-DTI  433 (582)
T ss_pred             ccccceEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEh-hhCCHHHHhcCeEEEcCCCcccc-ccH
Confidence            45666666688999  9999999999999999999998765  788898763 22123456777888998876554 466


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      .+|+..+.        .+..+++++    .+.++..++.         ++....+...++|||+.||     |+...|++
T Consensus       434 ~eni~~~~--------~~~~~~~~~----~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i  501 (582)
T 3b5x_A          434 ANNIAYAA--------EGEYTREQI----EQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV  501 (582)
T ss_pred             HHHHhccC--------CCCCCHHHH----HHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence            66654321        012334333    3444444441         1111222335799999888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|+.....+.+.+.++.+.   ++++|+...+. .+|+++.+
T Consensus       502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l  551 (582)
T 3b5x_A          502 LILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVV  551 (582)
T ss_pred             EEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEE
Confidence            9999999999999888888888877543   77999998776 57877644

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.54  E-value=1.3e-13  Score=124.51  Aligned_cols=159  Identities=16%  Similarity=0.207  Sum_probs=110.3

Q ss_pred             cccc-cCCCCCCCccCcHHHHHHHHHHHhc-----------CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281           4 WVDK-YRPNNLQKLDFHCKQANHLRNLLKE-----------GDFPH-LLFYGPSGAGKKTRIMALLKELYGP--------   62 (287)
Q Consensus         4 w~~k-~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------   62 (287)
                      |.++ ....+|+++.|...++..++..+..           ...|. ++|+|||||||||+++++++....+        
T Consensus         5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~   84 (476)
T 2ce7_A            5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSD   84 (476)
T ss_dssp             CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHH
Confidence            3444 4455899999999888777776521           23443 9999999999999999999987543        


Q ss_pred             --------------------------EEEEeCCCCCCH--------------HHHHHHHHHHHhcc--CCcEEEEEeCCC
Q psy2281          63 --------------------------VIILNETDHLTR--------------EAQQALRRTMEKYI--TTCRLILCANSM  100 (287)
Q Consensus        63 --------------------------~i~ide~d~l~~--------------~~~~~l~~~i~~~~--~~~~~i~~~~~~  100 (287)
                                                +++|||+|.+..              ..++.|+..++...  ....++.++|.+
T Consensus        85 ~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~  164 (476)
T 2ce7_A           85 FVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP  164 (476)
T ss_dssp             TTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred             HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence                                      899999988642              12445555565432  234566666666


Q ss_pred             CCCcHHHhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcH-HHHHHHHH
Q psy2281         101 SQVIPAIRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNL-RRAILMCE  163 (287)
Q Consensus       101 ~~l~~~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~-r~al~~l~  163 (287)
                      +.+.+++.+  ||. .+.+..|+.++..++++..++...+. ++.....++..+.|.. +...+.+.
T Consensus       165 ~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~  230 (476)
T 2ce7_A          165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVN  230 (476)
T ss_dssp             GGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             hhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHH
Confidence            778888775  774 68899999999999888877765542 2223677888888865 33333333

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.54  E-value=1.3e-13  Score=121.92  Aligned_cols=153  Identities=21%  Similarity=0.237  Sum_probs=110.2

Q ss_pred             CccCcHHHHHHHHHHHh-------cC-----------------------CCCcEEEeCCCCCcHHHHHHHHHHHhCCC--
Q psy2281          15 KLDFHCKQANHLRNLLK-------EG-----------------------DFPHLLFYGPSGAGKKTRIMALLKELYGP--   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~-------~g-----------------------~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--   62 (287)
                      .++|+..+++.+...+.       .|                       ..++++|+||||||||++++++++.+..+  
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~  101 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA  101 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            46899988887776651       10                       12349999999999999999999876422  


Q ss_pred             --------------------------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhcc--
Q psy2281          63 --------------------------------------VIILNETDHLTRE--------------AQQALRRTMEKYI--   88 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~--   88 (287)
                                                            ++++||++.+...              .++.|++.++...  
T Consensus       102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~  181 (376)
T 1um8_A          102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN  181 (376)
T ss_dssp             EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred             EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence                                                  8999999998876              7889999998431  


Q ss_pred             -------------------CCcEEEEEeCC-----------------------------------------CCCCcHHHh
Q psy2281          89 -------------------TTCRLILCANS-----------------------------------------MSQVIPAIR  108 (287)
Q Consensus        89 -------------------~~~~~i~~~~~-----------------------------------------~~~l~~~l~  108 (287)
                                         .+..++.+++.                                         ...+.+++.
T Consensus       182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~  261 (376)
T 1um8_A          182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI  261 (376)
T ss_dssp             ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred             cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence                               33445555441                                         012568899


Q ss_pred             ccc-ceeecCCCCHHHHHHHHHH----HHH----H-----hCCCCCHHHHHHHHHHcC---CcHHHHHHHHHHHhh
Q psy2281         109 SRC-LCIRIPAPTHEEIVSVLTN----ICK----K-----EGLTIPPEFALRLAQQSD---RNLRRAILMCEASKV  167 (287)
Q Consensus       109 sr~-~~~~~~~~~~~~~~~~l~~----~~~----~-----~~~~~~~~~~~~l~~~s~---G~~r~al~~l~~~~~  167 (287)
                      +|+ .++.|++++.+++..++..    +++    .     .++.+++++.+++++.+.   |+.|.+.+.++.++.
T Consensus       262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~  337 (376)
T 1um8_A          262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCL  337 (376)
T ss_dssp             TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH
T ss_pred             cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHH
Confidence            999 6799999999999888862    222    1     134578999999998865   888888887777654

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.54  E-value=6.2e-14  Score=131.21  Aligned_cols=160  Identities=17%  Similarity=0.167  Sum_probs=121.8

Q ss_pred             ccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----------------------
Q psy2281           5 VDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----------------------   61 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----------------------   61 (287)
                      ..+|||+.+++++|+..+++.+...+..|..  ++|+|||||||||+++++++.+.+                       
T Consensus        32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~~--vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~  109 (604)
T 3k1j_A           32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKRH--VLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV  109 (604)
T ss_dssp             GSCCCSSHHHHCCSCHHHHHHHHHHHHTTCC--EEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred             cccccccccceEECchhhHhhccccccCCCE--EEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence            4689999999999999999999999999977  999999999999999999876520                       


Q ss_pred             --------------------------------------------------------------------------------
Q psy2281          62 --------------------------------------------------------------------------------   61 (287)
Q Consensus        62 --------------------------------------------------------------------------------   61 (287)
                                                                                                      
T Consensus       110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~  189 (604)
T 3k1j_A          110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH  189 (604)
T ss_dssp             ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred             ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence                                                                                            


Q ss_pred             -------------CEEEEeCCCCCCHHHHHHHHHHHHhc---------------------cCCcEEEEEeCCC--CCCcH
Q psy2281          62 -------------PVIILNETDHLTREAQQALRRTMEKY---------------------ITTCRLILCANSM--SQVIP  105 (287)
Q Consensus        62 -------------~~i~ide~d~l~~~~~~~l~~~i~~~---------------------~~~~~~i~~~~~~--~~l~~  105 (287)
                                   .++++||++.++...++.|++.|+.-                     +.+.++|.++|..  ..+.+
T Consensus       190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~  269 (604)
T 3k1j_A          190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHP  269 (604)
T ss_dssp             GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCH
T ss_pred             ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCH
Confidence                         07899999999999999999998831                     2245677777654  46899


Q ss_pred             HHhcccc----eeecCC---CCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHHc---CC-------cHHHHHHHHH
Q psy2281         106 AIRSRCL----CIRIPA---PTHEEIVSVLTNICKKEG-----LTIPPEFALRLAQQS---DR-------NLRRAILMCE  163 (287)
Q Consensus       106 ~l~sr~~----~~~~~~---~~~~~~~~~l~~~~~~~~-----~~~~~~~~~~l~~~s---~G-------~~r~al~~l~  163 (287)
                      ++++||.    .+.|+.   -..+.+...+..+.+..+     ..+++++...+.+.+   .|       +.|.+.+.+.
T Consensus       270 ~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr  349 (604)
T 3k1j_A          270 ALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVR  349 (604)
T ss_dssp             HHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHH
T ss_pred             HHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHH
Confidence            9999994    345543   244556656555544322     467899999988765   55       4777666665


Q ss_pred             HHh
Q psy2281         164 ASK  166 (287)
Q Consensus       164 ~~~  166 (287)
                      ...
T Consensus       350 ~A~  352 (604)
T 3k1j_A          350 AAG  352 (604)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.54  E-value=3e-13  Score=113.70  Aligned_cols=157  Identities=17%  Similarity=0.146  Sum_probs=108.9

Q ss_pred             CCCCccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHHhC-----------------------------
Q psy2281          12 NLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELY-----------------------------   60 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----------------------------   60 (287)
                      +|++++|+......+...+..  ....+++|+||+|||||+++++++....                             
T Consensus         4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~   83 (265)
T 2bjv_A            4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAG   83 (265)
T ss_dssp             ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC--
T ss_pred             ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCccc
Confidence            678899987766655544421  1123399999999999999999986542                             


Q ss_pred             -----------------CCEEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCC-------CCCcH
Q psy2281          61 -----------------GPVIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSM-------SQVIP  105 (287)
Q Consensus        61 -----------------~~~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~-------~~l~~  105 (287)
                                       +.++++||++.++...|..|++.++..           ..+.++|.++|..       ..+.+
T Consensus        84 ~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~  163 (265)
T 2bjv_A           84 AFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRA  163 (265)
T ss_dssp             -------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCH
T ss_pred             ccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccH
Confidence                             018999999999999999999998853           2356778877764       24678


Q ss_pred             HHhcccc--eeecCCCCH--HHHHHHHHH----HHHHhCC----CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhc
Q psy2281         106 AIRSRCL--CIRIPAPTH--EEIVSVLTN----ICKKEGL----TIPPEFALRLAQQS-DRNLRRAILMCEASKVQ  168 (287)
Q Consensus       106 ~l~sr~~--~~~~~~~~~--~~~~~~l~~----~~~~~~~----~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~  168 (287)
                      .+.+|+.  .+.++++..  +++...+..    ..+..+.    .+++++.+.+...+ .|++|...+.++.++..
T Consensus       164 ~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~  239 (265)
T 2bjv_A          164 DLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR  239 (265)
T ss_dssp             HHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence            8999985  366776654  555554443    3444554    57899999998776 89999988888877654

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.53  E-value=1.7e-17  Score=146.20  Aligned_cols=170  Identities=12%  Similarity=0.110  Sum_probs=117.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +++.++..+++|++  +.|.||||||||||+++|++... +  .|.+|+.+.-.. ....+++.+.+++|+..++. .+.
T Consensus        36 ~L~~vsl~i~~Ge~--~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~-~~~~~rr~ig~v~Q~~~lf~-~tv  110 (390)
T 3gd7_A           36 ILENISFSISPGQR--VGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI-TLEQWRKAFGVIPQKVFIFS-GTF  110 (390)
T ss_dssp             SEEEEEEEECTTCE--EEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSS-CHHHHHHTEEEESCCCCCCS-EEH
T ss_pred             EeeceeEEEcCCCE--EEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcC-ChHHHhCCEEEEcCCcccCc-cCH
Confidence            34445555678999  99999999999999999999876 4  788898764221 12345677888888875543 233


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-----------HcCCcHHH-----HHHHHH
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQ-----------QSDRNLRR-----AILMCE  163 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~-----------~s~G~~r~-----al~~l~  163 (287)
                      .+|+..          +.....    +.+.+.++..++  .+...+++.+           +|+|+.||     |+...|
T Consensus       111 ~enl~~----------~~~~~~----~~v~~~l~~~~L--~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P  174 (390)
T 3gd7_A          111 RKNLDP----------NAAHSD----QEIWKVADEVGL--RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA  174 (390)
T ss_dssp             HHHHCT----------TCCSCH----HHHHHHHHHTTC--HHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhh----------ccccCH----HHHHHHHHHhCC--HHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence            343321          122233    234456666676  4444555555           89998888     777788


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++++|||++++|......+.+.+.++...   ++++|+.+.+. .+|+++.|
T Consensus       175 ~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~-~aDri~vl  226 (390)
T 3gd7_A          175 KILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAML-ECDQFLVI  226 (390)
T ss_dssp             CEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGT-TCSEEEEE
T ss_pred             CEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHH-hCCEEEEE
Confidence            999999999999988877777777665433   77899986654 47877644

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.52  E-value=2e-18  Score=144.81  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=112.9

Q ss_pred             HHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHH-hccCCcEEEEEeCCCCCC
Q psy2281          27 RNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTME-KYITTCRLILCANSMSQV  103 (287)
Q Consensus        27 ~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~-~~~~~~~~i~~~~~~~~l  103 (287)
                      +..++ |+.  ++|.||||+|||||++++++.. +.  .|.+++.+. ...  .. ++.+. +++|+..+  ..+..+++
T Consensus        25 sl~i~-Ge~--~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~-~~~--~~-~~~i~~~v~Q~~~l--~~tv~enl   94 (263)
T 2pjz_A           25 NLEVN-GEK--VIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEV-RKI--RN-YIRYSTNLPEAYEI--GVTVNDIV   94 (263)
T ss_dssp             EEEEC-SSE--EEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEG-GGC--SC-CTTEEECCGGGSCT--TSBHHHHH
T ss_pred             eEEEC-CEE--EEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEEC-cch--HH-hhheEEEeCCCCcc--CCcHHHHH
Confidence            33457 888  9999999999999999999998 76  778887542 110  11 23456 66666543  22333444


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      .....       +.....    +.+.+.++..++  + +...+.+.++|+|+.||     |+...|.++++|||++++|+
T Consensus        95 ~~~~~-------~~~~~~----~~~~~~l~~~gl--~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~  161 (263)
T 2pjz_A           95 YLYEE-------LKGLDR----DLFLEMLKALKL--GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDA  161 (263)
T ss_dssp             HHHHH-------HTCCCH----HHHHHHHHHTTC--CGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCH
T ss_pred             HHhhh-------hcchHH----HHHHHHHHHcCC--ChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCH
Confidence            33211       112222    345566677777  5 55556688999999888     66667889999999999999


Q ss_pred             ccCccHHHHHHHHHHH-HHhccChhHHHHHHH-HHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL-IISEQSPKKLLEVRT-RLYEL  213 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~-i~~~~~~~~~~~~~~-~~~~l  213 (287)
                      .....+.+.+.++.+. ++++|+.+.+..+++ +++.+
T Consensus       162 ~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l  199 (263)
T 2pjz_A          162 ARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFL  199 (263)
T ss_dssp             HHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEE
T ss_pred             HHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEE
Confidence            8887777777665433 669999998888888 76543

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.52  E-value=3.6e-15  Score=125.69  Aligned_cols=147  Identities=17%  Similarity=0.240  Sum_probs=100.9

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHHh-----------cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLLK-----------EGDFPH-LLFYGPSGAGKKTRIMALLKELYGP-----------   62 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-----------   62 (287)
                      .++.+..|++++|+..+++.+...+.           ....+. ++|+||||||||++++++++....+           
T Consensus         3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~   82 (268)
T 2r62_A            3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE   82 (268)
T ss_dssp             CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT
T ss_pred             ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH
Confidence            46778899999999887777776653           122333 9999999999999999999876422           


Q ss_pred             -----------------------EEEEeCCCCCCHHH---------------HHHHHHHHHhccC---CcEEEEEeCCCC
Q psy2281          63 -----------------------VIILNETDHLTREA---------------QQALRRTMEKYIT---TCRLILCANSMS  101 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~~~---------------~~~l~~~i~~~~~---~~~~i~~~~~~~  101 (287)
                                             +++|||+|.+....               +..++..++....   ...++.+++..+
T Consensus        83 ~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~  162 (268)
T 2r62_A           83 MFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE  162 (268)
T ss_dssp             SCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred             hhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence                                   89999999875432               2234444443322   134555566666


Q ss_pred             CCcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281         102 QVIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR  153 (287)
Q Consensus       102 ~l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G  153 (287)
                      .+.+++.+  |+ ..+.|+.|+.++..++++..++..++. ++.....++..+.|
T Consensus       163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g  216 (268)
T 2r62_A          163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAG  216 (268)
T ss_dssp             TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCS
T ss_pred             hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCC
Confidence            78888887  55 458899999999999998887655442 22224556666655

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.52  E-value=6.6e-14  Score=134.56  Aligned_cols=149  Identities=16%  Similarity=0.171  Sum_probs=114.7

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------------------   61 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------   61 (287)
                      .|.++++|..|++++|+...+..+...+.....++++|+||||||||++++++++.+..                     
T Consensus       175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~  254 (758)
T 1r6b_X          175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL  254 (758)
T ss_dssp             BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---
T ss_pred             hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh
Confidence            58899999999999999999888888887766667999999999999999999987610                     


Q ss_pred             -------------------------CEEEEeCCCCCC---------HHHHHHHHHHHHhccCCcEEEEEeCCCC-----C
Q psy2281          62 -------------------------PVIILNETDHLT---------REAQQALRRTMEKYITTCRLILCANSMS-----Q  102 (287)
Q Consensus        62 -------------------------~~i~ide~d~l~---------~~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~  102 (287)
                                               .+++|||++.+.         .+..+.|...++.  ....++.+++..+     .
T Consensus       255 ~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~I~at~~~~~~~~~~  332 (758)
T 1r6b_X          255 AGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGSTTYQEFSNIFE  332 (758)
T ss_dssp             CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEEEEEECHHHHHCCCC
T ss_pred             ccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEEEEEeCchHHhhhhh
Confidence                                     189999999872         2223333322221  2345566655432     3


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSDR  153 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~G  153 (287)
                      +.+++.+||..+.|..|+.++..+++..+++.    .++.++++++..++.++.|
T Consensus       333 ~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~  387 (758)
T 1r6b_X          333 KDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK  387 (758)
T ss_dssp             CTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred             cCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Confidence            56789999999999999999999998887765    5778899999998887765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.51  E-value=2.3e-13  Score=130.76  Aligned_cols=137  Identities=15%  Similarity=0.302  Sum_probs=107.6

Q ss_pred             CCccCcHHHHHHHHHHHhcC-------CCC--cEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281          14 QKLDFHCKQANHLRNLLKEG-------DFP--HLLFYGPSGAGKKTRIMALLKELYGP----------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~g-------~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------   62 (287)
                      +.++|+..++..+...+...       ..|  +++|+||||||||+++++++..+...                      
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~  570 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQ  570 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccch
Confidence            45788888887777777421       112  49999999999999999999986221                      


Q ss_pred             -----------EEEEeCCCCCCHHHHHHHHHHHHh-----------ccCCcEEEEEeCCCCC------------CcHHHh
Q psy2281          63 -----------VIILNETDHLTREAQQALRRTMEK-----------YITTCRLILCANSMSQ------------VIPAIR  108 (287)
Q Consensus        63 -----------~i~ide~d~l~~~~~~~l~~~i~~-----------~~~~~~~i~~~~~~~~------------l~~~l~  108 (287)
                                 ++++||++.++.+.++.|++.++.           .+.++.+|+++|....            +.+.+.
T Consensus       571 l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~  650 (758)
T 3pxi_A          571 LTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFI  650 (758)
T ss_dssp             CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHH
Confidence                       899999999999999999999987           3456788888886443            778899


Q ss_pred             ccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Q psy2281         109 SRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQ  150 (287)
Q Consensus       109 sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~  150 (287)
                      +|+ .++.|++++.+++..++...+...         .+.+++++.+++++.
T Consensus       651 ~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~  702 (758)
T 3pxi_A          651 NRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEE  702 (758)
T ss_dssp             TTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGG
T ss_pred             hhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHh
Confidence            999 689999999999999888877653         345689999999764

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.50  E-value=4e-17  Score=136.95  Aligned_cols=169  Identities=14%  Similarity=0.073  Sum_probs=110.6

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                      .++..+++|++  ++|.||||||||||+++|++.+.+. .|.+++.+.-. .....+++.+.+++|++.++. .+..+++
T Consensus        38 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~enl  113 (260)
T 2ghi_A           38 SINFFIPSGTT--CALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNK-YNRNSIRSIIGIVPQDTILFN-ETIKYNI  113 (260)
T ss_dssp             EEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGG-BCHHHHHTTEEEECSSCCCCS-EEHHHHH
T ss_pred             eeEEEECCCCE--EEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhh-cCHHHHhccEEEEcCCCcccc-cCHHHHH
Confidence            34444578888  9999999999999999999987533 78888765311 112234556777777765432 2444443


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      ..+.         ...+.++    +...++..++  .+...           +...++|+|+.||     |+...|.+++
T Consensus       114 ~~~~---------~~~~~~~----~~~~l~~~~l--~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lll  178 (260)
T 2ghi_A          114 LYGK---------LDATDEE----VIKATKSAQL--YDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI  178 (260)
T ss_dssp             HTTC---------TTCCHHH----HHHHHHHTTC--HHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred             hccC---------CCCCHHH----HHHHHHHhCC--HHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence            2210         1122322    2334444444  12110           1235789998888     7777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|+.....+.+.+.++.+.   ++++|+...+.. +|+++.+
T Consensus       179 LDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~-~d~i~~l  226 (260)
T 2ghi_A          179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS-AESIILL  226 (260)
T ss_dssp             EECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT-CSEEEEE
T ss_pred             EECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEE
Confidence            99999999999888888888877543   779999887754 7776643

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.49  E-value=1.9e-12  Score=110.97  Aligned_cols=155  Identities=19%  Similarity=0.172  Sum_probs=112.0

Q ss_pred             CccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------------------
Q psy2281          15 KLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELYG-------------------------------   61 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------------------------------   61 (287)
                      +++|+......+...+..  ....+++|+||+|+|||+++++++.....                               
T Consensus         3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~t   82 (304)
T 1ojl_A            3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFT   82 (304)
T ss_dssp             CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC
T ss_pred             CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccC
Confidence            567776665555555432  22233999999999999999999875310                               


Q ss_pred             ---------------CEEEEeCCCCCCHHHHHHHHHHHHhcc-----------CCcEEEEEeCCC-------CCCcHHHh
Q psy2281          62 ---------------PVIILNETDHLTREAQQALRRTMEKYI-----------TTCRLILCANSM-------SQVIPAIR  108 (287)
Q Consensus        62 ---------------~~i~ide~d~l~~~~~~~l~~~i~~~~-----------~~~~~i~~~~~~-------~~l~~~l~  108 (287)
                                     .++++||++.++...|..|++.++...           .+.++|.++|..       ..+.+.+.
T Consensus        83 g~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~  162 (304)
T 1ojl_A           83 GADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLY  162 (304)
T ss_dssp             ---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred             chhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHH
Confidence                           089999999999999999999988642           346777777664       13566788


Q ss_pred             cccce--eecCCCC--HHHHHHHHHHHHH----HhC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q psy2281         109 SRCLC--IRIPAPT--HEEIVSVLTNICK----KEG---LTIPPEFALRLAQQS-DRNLRRAILMCEASKVQQ  169 (287)
Q Consensus       109 sr~~~--~~~~~~~--~~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~d  169 (287)
                      +|+..  +.++++.  .+++...+...++    ..+   ..+++++.+.+..++ .|++|...+.++.++...
T Consensus       163 ~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~  235 (304)
T 1ojl_A          163 YRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL  235 (304)
T ss_dssp             HHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred             hhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence            88754  5566665  4566555555443    333   457999999999998 999999999999877654

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.48  E-value=1.5e-13  Score=124.98  Aligned_cols=150  Identities=19%  Similarity=0.237  Sum_probs=110.2

Q ss_pred             ccCCCCCCCccCcHHHHHHHHHHHhc------------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q psy2281           7 KYRPNNLQKLDFHCKQANHLRNLLKE------------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP-----------   62 (287)
Q Consensus         7 k~~p~~~~~~~~~~~~~~~l~~~~~~------------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------   62 (287)
                      ..++..+++++|.......+...+..            ...+ +++|+||||||||++++++++....+           
T Consensus       197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~  276 (489)
T 3hu3_A          197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS  276 (489)
T ss_dssp             HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT
T ss_pred             ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh
Confidence            45677899999999888888777632            1233 39999999999999999999876433           


Q ss_pred             -----------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhccC--CcEEEEEeCCCCCCcHH
Q psy2281          63 -----------------------VIILNETDHLTR-----------EAQQALRRTMEKYIT--TCRLILCANSMSQVIPA  106 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~~~--~~~~i~~~~~~~~l~~~  106 (287)
                                             ++++||+|.+..           ..+..|++.++....  +..++.++|..+.+.++
T Consensus       277 ~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~a  356 (489)
T 3hu3_A          277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA  356 (489)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGG
T ss_pred             hhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHH
Confidence                                   899999975532           456778888886533  34566667777778999


Q ss_pred             Hhc--ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281         107 IRS--RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR  157 (287)
Q Consensus       107 l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~  157 (287)
                      +++  |+. .+.+..|+.++..+++...++...+. .+..+..++..+.|...+
T Consensus       357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~  409 (489)
T 3hu3_A          357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGA  409 (489)
T ss_dssp             GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHH
T ss_pred             HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHH
Confidence            988  553 58899999999999999888766654 222356667666664333

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.48  E-value=4.3e-13  Score=128.89  Aligned_cols=138  Identities=23%  Similarity=0.273  Sum_probs=108.1

Q ss_pred             CCccCcHHHHHHHHHHHhc---CC----CC--cEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281          14 QKLDFHCKQANHLRNLLKE---GD----FP--HLLFYGPSGAGKKTRIMALLKELYGP----------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~---g~----~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------   62 (287)
                      +.++|+..++..+...+..   |-    .|  +++|+||+|||||+++++++..+..+                      
T Consensus       458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~  537 (758)
T 1r6b_X          458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAP  537 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred             hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCC
Confidence            3577888888777666632   21    12  49999999999999999999876411                      


Q ss_pred             ----------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCCC--------
Q psy2281          63 ----------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSMS--------  101 (287)
Q Consensus        63 ----------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~~--------  101 (287)
                                            ++++||++.++++.++.|++.++..           +.++.+|+++|...        
T Consensus       538 ~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~  617 (758)
T 1r6b_X          538 PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSI  617 (758)
T ss_dssp             SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-------
T ss_pred             CCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhccc
Confidence                                  8999999999999999999999853           24556777777632        


Q ss_pred             -----------------CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHc
Q psy2281         102 -----------------QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQS  151 (287)
Q Consensus       102 -----------------~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~s  151 (287)
                                       .+.+++.+|| .++.|++++.+++..++...+.+.         .+.+++++.+++++.+
T Consensus       618 g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~  694 (758)
T 1r6b_X          618 GLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKG  694 (758)
T ss_dssp             ----------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHH
T ss_pred             CccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhC
Confidence                             4678899999 679999999999999998877643         3456899999999866

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.48  E-value=2.5e-16  Score=130.90  Aligned_cols=169  Identities=13%  Similarity=0.064  Sum_probs=111.8

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCC
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQV  103 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l  103 (287)
                      ++..+++|+.  ++|.||||||||||+++|++...+.  .|.+++.+.-... ...+++.+.+++|+..++. .+..+++
T Consensus        21 vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~~~~~~i~~v~q~~~l~~-~tv~enl   96 (243)
T 1mv5_A           21 ISFEAQPNSI--IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS-LENWRSQIGFVSQDSAIMA-GTIRENL   96 (243)
T ss_dssp             EEEEECTTEE--EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTS-CSCCTTTCCEECCSSCCCC-EEHHHHT
T ss_pred             eEEEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCC-HHHHHhhEEEEcCCCcccc-ccHHHHH
Confidence            3444577888  9999999999999999999988765  6778875421100 1123445777777765433 2444444


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-----------HHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-----------ALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      ..+..        ...+.+.    +...++..++.  +..           .+...++|+|+.||     |+...|++++
T Consensus        97 ~~~~~--------~~~~~~~----~~~~l~~~~l~--~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lll  162 (243)
T 1mv5_A           97 TYGLE--------GDYTDED----LWQVLDLAFAR--SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILM  162 (243)
T ss_dssp             TSCTT--------SCSCHHH----HHHHHHHHTCT--TTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred             hhhcc--------CCCCHHH----HHHHHHHhChH--HHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence            32211        1123332    34445555551  111           12245789998888     7777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|+.....+.+.+.++.+.   ++++|+...+. .+|+++.+
T Consensus       163 LDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l  210 (243)
T 1mv5_A          163 LDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFI  210 (243)
T ss_dssp             EECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEE
T ss_pred             EECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEE
Confidence            99999999999999999999888633   77999988765 47776543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.46  E-value=1e-16  Score=149.79  Aligned_cols=172  Identities=16%  Similarity=0.126  Sum_probs=117.2

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|+.  +.+.||||+||||+++++++...+.  .|.+|+.+.- .-....+++.+.+++|++.++ ..+..+
T Consensus       372 ~~isl~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~-~~~~~~~r~~i~~v~Q~~~lf-~~tv~e  447 (598)
T 3qf4_B          372 KDITFHIKPGQK--VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIR-KIKRSSLRSSIGIVLQDTILF-STTVKE  447 (598)
T ss_dssp             CSEEEECCTTCE--EEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGG-GSCHHHHHHHEEEECTTCCCC-SSBHHH
T ss_pred             cceEEEEcCCCE--EEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhh-hCCHHHHHhceEEEeCCCccc-cccHHH
Confidence            344444577888  9999999999999999999998876  8889987642 212346778899999987543 234444


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC---------CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL---------TIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      |+..+         -+..+++++.+    .++..++         .++....+...++|||+.||     |+...|++++
T Consensus       448 ni~~~---------~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~ill  514 (598)
T 3qf4_B          448 NLKYG---------NPGATDEEIKE----AAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI  514 (598)
T ss_dssp             HHHSS---------STTCCTTHHHH----HTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             HHhcC---------CCCCCHHHHHH----HHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            44221         11223333333    2222222         01111223446789998888     6667789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|+.....+.+.+.++.+.   ++++|+...+.. +|+++.+
T Consensus       515 lDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l  562 (598)
T 3qf4_B          515 LDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVL  562 (598)
T ss_dssp             ECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEE
T ss_pred             EECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence            99999999999888888888877544   779999998765 7877644

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.46  E-value=1.3e-12  Score=109.07  Aligned_cols=151  Identities=19%  Similarity=0.259  Sum_probs=99.5

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFPH-LLFYGPSGAGKKTRIMALLKELYGP--------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------   62 (287)
                      .+.....+.+|++++|...++..++.....           -..|. ++|+|||||||||+++++++.....        
T Consensus         5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~   84 (254)
T 1ixz_A            5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD   84 (254)
T ss_dssp             ---CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             ccccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence            345667788999999988877666655421           12232 8999999999999999999876422        


Q ss_pred             --------------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC-CcEE-EEEeCCC
Q psy2281          63 --------------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT-TCRL-ILCANSM  100 (287)
Q Consensus        63 --------------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~-~~~~-i~~~~~~  100 (287)
                                                ++++||+|.+..           .   ..+.+...++...+ ...+ +.+++.+
T Consensus        85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p  164 (254)
T 1ixz_A           85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP  164 (254)
T ss_dssp             HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred             HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCc
Confidence                                      888999875421           1   12233334443322 2333 3455566


Q ss_pred             CCCcHHHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcH
Q psy2281         101 SQVIPAIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNL  155 (287)
Q Consensus       101 ~~l~~~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~  155 (287)
                      +.+.+++++  |+ ..+.++.|+.++..++++..++...  ++++ ....++..+.|..
T Consensus       165 ~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~  221 (254)
T 1ixz_A          165 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFV  221 (254)
T ss_dssp             GGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCC
T ss_pred             hhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC--CCcccCHHHHHHHcCCCC
Confidence            778888888  44 3588999999999998887765433  3433 3677888887744

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.45  E-value=6.6e-16  Score=143.96  Aligned_cols=171  Identities=12%  Similarity=0.055  Sum_probs=117.1

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|+.  +.+.|||||||||+++++++...+.  .|.+|+.+.-. .....+++.+.+++|++.++. .+..+
T Consensus       360 ~~v~~~i~~G~~--~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~-~~~~~~~~~i~~v~Q~~~l~~-~tv~e  435 (582)
T 3b60_A          360 RNINLKIPAGKT--VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE-YTLASLRNQVALVSQNVHLFN-DTVAN  435 (582)
T ss_dssp             EEEEEEECTTCE--EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT-BCHHHHHHTEEEECSSCCCCS-SBHHH
T ss_pred             cceeEEEcCCCE--EEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc-cCHHHHHhhCeEEccCCcCCC-CCHHH
Confidence            334444578888  9999999999999999999998776  78899866321 113446677888888875532 34444


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHH-----------HHHHHcCCcHHH-----HHHHHHHH
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-----------RLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      |+..+.        .+..++++    +.+.++..++  .+...+           ...++|||+.||     |+...|++
T Consensus       436 ni~~~~--------~~~~~~~~----~~~~l~~~~l--~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~i  501 (582)
T 3b60_A          436 NIAYAR--------TEEYSREQ----IEEAARMAYA--MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI  501 (582)
T ss_dssp             HHHTTT--------TSCCCHHH----HHHHHHTTTC--HHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred             HHhccC--------CCCCCHHH----HHHHHHHcCC--HHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence            443221        01233433    3444555555  222222           124689998888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|+.....+.+.+.++.+.   ++++|+...+. .+|+++.+
T Consensus       502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l  551 (582)
T 3b60_A          502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVV  551 (582)
T ss_dssp             EEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEE
T ss_pred             EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEE
Confidence            9999999999999888888888887544   77999998775 47776644

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.44  E-value=6.1e-13  Score=112.28  Aligned_cols=126  Identities=17%  Similarity=0.233  Sum_probs=86.6

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------EEEEeCCCCC---------
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELYGP-----------------------------------VIILNETDHL---------   72 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------~i~ide~d~l---------   72 (287)
                      +++|+||+|||||++++++++....+                                   ++++||+|.+         
T Consensus        66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~  145 (272)
T 1d2n_A           66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPR  145 (272)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTB
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChh
Confidence            39999999999999999999876433                                   8999998875         


Q ss_pred             -CHHHHHHHHHHHHhcc--CCcE-EEEEeCCCCCCcH-HHhccc-ceeecCCCCH-HHHHHHHHHHHHHhCCCCCHHHHH
Q psy2281          73 -TREAQQALRRTMEKYI--TTCR-LILCANSMSQVIP-AIRSRC-LCIRIPAPTH-EEIVSVLTNICKKEGLTIPPEFAL  145 (287)
Q Consensus        73 -~~~~~~~l~~~i~~~~--~~~~-~i~~~~~~~~l~~-~l~sr~-~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~  145 (287)
                       ....++.|...++...  .... ++.+++..+.+.+ .+++|+ ..+.+++++. +++...+..   ..+  ++++...
T Consensus       146 ~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---~~~--~~~~~~~  220 (272)
T 1d2n_A          146 FSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---LGN--FKDKERT  220 (272)
T ss_dssp             CCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---HTC--SCHHHHH
T ss_pred             HHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh---cCC--CCHHHHH
Confidence             3334455555555421  1223 3444444443444 467885 5688877765 555544443   223  4888999


Q ss_pred             HHHHHcCC-----cHHHHHHHHHHHhh
Q psy2281         146 RLAQQSDR-----NLRRAILMCEASKV  167 (287)
Q Consensus       146 ~l~~~s~G-----~~r~al~~l~~~~~  167 (287)
                      .+++.+.|     ++|++++.++....
T Consensus       221 ~l~~~~~g~~~~g~ir~l~~~l~~a~~  247 (272)
T 1d2n_A          221 TIAQQVKGKKVWIGIKKLLMLIEMSLQ  247 (272)
T ss_dssp             HHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCCccccHHHHHHHHHHHhh
Confidence            99999988     89999999987754

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.42  E-value=3.7e-12  Score=115.73  Aligned_cols=159  Identities=18%  Similarity=0.240  Sum_probs=104.8

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhc-----------CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------GDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------   62 (287)
                      |.+. .+.+|+++.|..+++..++..+..           ...|. ++|+|||||||||+++++++....+         
T Consensus        22 ~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~  100 (499)
T 2dhr_A           22 LTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF  100 (499)
T ss_dssp             ECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             eccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence            3344 678899999999888777766521           22343 9999999999999999999876422         


Q ss_pred             -------------------------EEEEeCCCCCCH-----------H---HHHHHHHHHHhccC-CcEEEE-EeCCCC
Q psy2281          63 -------------------------VIILNETDHLTR-----------E---AQQALRRTMEKYIT-TCRLIL-CANSMS  101 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~-----------~---~~~~l~~~i~~~~~-~~~~i~-~~~~~~  101 (287)
                                               ++++||+|.+..           .   ..+.++..++.... ...+++ +++.++
T Consensus       101 ~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~  180 (499)
T 2dhr_A          101 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD  180 (499)
T ss_dssp             TSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGG
T ss_pred             HHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChh
Confidence                                     899999987531           1   12333333433222 233444 444455


Q ss_pred             CCcHHHhccc---ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcH-HHHHHHHHHH
Q psy2281         102 QVIPAIRSRC---LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNL-RRAILMCEAS  165 (287)
Q Consensus       102 ~l~~~l~sr~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~-r~al~~l~~~  165 (287)
                      .+.+++.+++   ..+.+..|+.++..++++..++.  +.++++ ....++..+.|.. +..-+.+..+
T Consensus       181 ~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~--~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A  247 (499)
T 2dhr_A          181 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEA  247 (499)
T ss_dssp             GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS--SCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred             hcCcccccccccceEEecCCCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            6788888744   36889999999998888766543  333433 3677888888865 4444444443

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.42  E-value=3e-16  Score=146.16  Aligned_cols=170  Identities=15%  Similarity=0.122  Sum_probs=115.5

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|+.  +.++||||+||||+++++++...+.  .|.+|+.+. ..-....+++.+.+++|++.++ ..+..+
T Consensus       358 ~~isl~i~~G~~--~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~-~~~~~~~~r~~i~~v~Q~~~l~-~~tv~e  433 (578)
T 4a82_A          358 KDINLSIEKGET--VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI-KDFLTGSLRNQIGLVQQDNILF-SDTVKE  433 (578)
T ss_dssp             EEEEEEECTTCE--EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG-GGSCHHHHHHTEEEECSSCCCC-SSBHHH
T ss_pred             eeeEEEECCCCE--EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEh-hhCCHHHHhhheEEEeCCCccC-cccHHH
Confidence            344444578888  9999999999999999999998876  888998763 2212345677888888887543 234445


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHHHH
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~~~  165 (287)
                      |+..+         .+..+++++.    +.++..++  .+...           +...++|||+.||     |+...|++
T Consensus       434 ni~~~---------~~~~~~~~~~----~~~~~~~~--~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i  498 (578)
T 4a82_A          434 NILLG---------RPTATDEEVV----EAAKMANA--HDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI  498 (578)
T ss_dssp             HHGGG---------CSSCCHHHHH----HHHHHTTC--HHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred             HHhcC---------CCCCCHHHHH----HHHHHhCc--HHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence            54322         1123344433    33333343  11111           2224688998888     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|||++++|+.....+.+.+.++.+.   ++++|+...+.. +|+++.+
T Consensus       499 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l  548 (578)
T 4a82_A          499 LILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVI  548 (578)
T ss_dssp             EEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEE
T ss_pred             EEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEE
Confidence            9999999999988877777777766543   779999988765 7777644

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.39  E-value=2.5e-16  Score=144.71  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=102.6

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~  108 (287)
                      .+|++  +.|.||||||||||+++|++...+.  .|.+++..             +.+.+++....+..+..+++.. ..
T Consensus       292 ~~Gei--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~-------------i~~~~q~~~~~~~~tv~~~l~~-~~  355 (538)
T 3ozx_A          292 KEGEI--IGILGPNGIGKTTFARILVGEITADEGSVTPEKQI-------------LSYKPQRIFPNYDGTVQQYLEN-AS  355 (538)
T ss_dssp             ETTCE--EEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCC-------------EEEECSSCCCCCSSBHHHHHHH-HC
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCee-------------eEeechhcccccCCCHHHHHHH-hh
Confidence            46777  9999999999999999999988765  34443321             2222222110000011111111 00


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW  183 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~  183 (287)
                      .     .+....    ...+.++++..++  .+...+.+.++|||+.||     |+...|.++++||||+++|......+
T Consensus       356 ~-----~~~~~~----~~~~~~~l~~~~l--~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i  424 (538)
T 3ozx_A          356 K-----DALSTS----SWFFEEVTKRLNL--HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV  424 (538)
T ss_dssp             S-----STTCTT----SHHHHHTTTTTTG--GGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred             h-----hccchh----HHHHHHHHHHcCC--HHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence            0     010011    1234455555555  444556778899999998     66667889999999999999999999


Q ss_pred             HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .+.+.++.++     ++++|+...+..++|+++.+
T Consensus       425 ~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl  459 (538)
T 3ozx_A          425 AKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF  459 (538)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999998764     77999999999999988744

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.39  E-value=1.3e-11  Score=104.47  Aligned_cols=146  Identities=20%  Similarity=0.279  Sum_probs=97.8

Q ss_pred             cCCCCCCCccCcHHHHHHHHHHHhc-----------CCCC-cEEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281           8 YRPNNLQKLDFHCKQANHLRNLLKE-----------GDFP-HLLFYGPSGAGKKTRIMALLKELYGP-------------   62 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~~~~~-----------g~~~-~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------   62 (287)
                      ..+.+|++++|..+++..++.....           -..+ +++|+|||||||||+++++++.....             
T Consensus        34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~  113 (278)
T 1iy2_A           34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF  113 (278)
T ss_dssp             CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred             CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence            3567899999998887766665521           1223 38999999999999999999876422             


Q ss_pred             ---------------------EEEEeCCCCCC-----------HHHHHHHHHH---HHhcc-CCc-EEEEEeCCCCCCcH
Q psy2281          63 ---------------------VIILNETDHLT-----------REAQQALRRT---MEKYI-TTC-RLILCANSMSQVIP  105 (287)
Q Consensus        63 ---------------------~i~ide~d~l~-----------~~~~~~l~~~---i~~~~-~~~-~~i~~~~~~~~l~~  105 (287)
                                           ++++||++.+.           ......+.+.   ++... +.. .++.+++.++.+.+
T Consensus       114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~  193 (278)
T 1iy2_A          114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP  193 (278)
T ss_dssp             TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCH
T ss_pred             hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCH
Confidence                                 78899987531           1112222233   33222 222 34445666777888


Q ss_pred             HHhc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcH
Q psy2281         106 AIRS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNL  155 (287)
Q Consensus       106 ~l~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~  155 (287)
                      ++.+  |+ ..+.++.|+.++..++++..++...  ++++ ....++..+.|..
T Consensus       194 ~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~la~~~~G~~  245 (278)
T 1iy2_A          194 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFV  245 (278)
T ss_dssp             HHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCC
T ss_pred             hHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCC--CCcccCHHHHHHHcCCCC
Confidence            9887  44 3688999999999999887765433  3433 3677888888755

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.39  E-value=1.4e-12  Score=126.75  Aligned_cols=152  Identities=16%  Similarity=0.197  Sum_probs=114.1

Q ss_pred             CCccCcHHHHHHHHHHHhcCC-------C--CcEEEeCCCCCcHHHHHHHHHHHhCCC----------------------
Q psy2281          14 QKLDFHCKQANHLRNLLKEGD-------F--PHLLFYGPSGAGKKTRIMALLKELYGP----------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~g~-------~--~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------   62 (287)
                      +.++|+..++..+...+....       .  .+++|+||+|||||+++++++..+...                      
T Consensus       558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~  637 (854)
T 1qvr_A          558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLI  637 (854)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-
T ss_pred             cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHc
Confidence            457888888888877774321       1  249999999999999999999876210                      


Q ss_pred             -------------------------EEEEeCCCCCCHHHHHHHHHHHHhcc-----------CCcEEEEEeCCC------
Q psy2281          63 -------------------------VIILNETDHLTREAQQALRRTMEKYI-----------TTCRLILCANSM------  100 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~-----------~~~~~i~~~~~~------  100 (287)
                                               ++++||++.++.+.++.|++.++...           .++.+|+++|..      
T Consensus       638 g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~  717 (854)
T 1qvr_A          638 GAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILE  717 (854)
T ss_dssp             -------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHH
T ss_pred             CCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhh
Confidence                                     89999999999999999999998542           345577777651      


Q ss_pred             --------------------CCCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHH
Q psy2281         101 --------------------SQVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKE---------GLTIPPEFALRLAQQ  150 (287)
Q Consensus       101 --------------------~~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~  150 (287)
                                          ..+.+.+.+|+ .++.|.+++.+++..++...++..         .+.+++++.+++++.
T Consensus       718 ~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~  797 (854)
T 1qvr_A          718 GLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAER  797 (854)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred             hcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHc
Confidence                                23567788999 567889999999998888776532         245799999999987


Q ss_pred             cC---CcHHHHHHHHHHH
Q psy2281         151 SD---RNLRRAILMCEAS  165 (287)
Q Consensus       151 s~---G~~r~al~~l~~~  165 (287)
                      +.   |+.|..-+.++..
T Consensus       798 ~~~~~gn~R~L~~~i~~~  815 (854)
T 1qvr_A          798 GYDPVFGARPLRRVIQRE  815 (854)
T ss_dssp             HCBTTTBTSTHHHHHHHH
T ss_pred             CCCCCCChHHHHHHHHHH
Confidence            65   7777655555543

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.39  E-value=2.9e-16  Score=129.34  Aligned_cols=155  Identities=15%  Similarity=0.128  Sum_probs=96.1

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|++  ++|.||||||||||++++++.+.+.  .|.+++              .+.+++|+..++. .+..++
T Consensus        26 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------~i~~v~q~~~~~~-~tv~en   88 (229)
T 2pze_A           26 DINFKIERGQL--LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------RISFCSQFSWIMP-GTIKEN   88 (229)
T ss_dssp             EEEEEEETTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS--------------CEEEECSSCCCCS-BCHHHH
T ss_pred             eeEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCcCCccEEEECC--------------EEEEEecCCcccC-CCHHHH
Confidence            34444578888  9999999999999999999998766  677776              1556666554322 233333


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +..+          .......    ....++..++  .+...           +...++|+|+.||     |+...|+++
T Consensus        89 l~~~----------~~~~~~~----~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll  152 (229)
T 2pze_A           89 IIFG----------VSYDEYR----YRSVIKACQL--EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY  152 (229)
T ss_dssp             HHTT----------SCCCHHH----HHHHHHHTTC--HHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred             hhcc----------CCcChHH----HHHHHHHhCc--HHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence            3211          0112211    1222233333  11110           1135789998888     666668899


Q ss_pred             hcCCCcccccCccCccHHHH-HHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIY-IRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~-i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|||++++|+.....+.+. +.++.+.   ++++|+...+. .+|+++.+
T Consensus       153 lLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l  202 (229)
T 2pze_A          153 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL  202 (229)
T ss_dssp             EEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred             EEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence            99999999998877666654 2333222   67999987765 47766533

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.36  E-value=1.6e-12  Score=123.64  Aligned_cols=142  Identities=20%  Similarity=0.268  Sum_probs=100.6

Q ss_pred             CCCCCccCcHHHHHHHHHHHh-----------cCC-CCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLLK-----------EGD-FPH-LLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~-----------~g~-~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      -+|+++.|....++.|+..+.           -|- .|. ++|+||||||||++++++|+++...               
T Consensus       201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g  280 (806)
T 3cf2_A          201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG  280 (806)
T ss_dssp             CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence            468889998877777776651           132 233 9999999999999999999887644               


Q ss_pred             -------------------EEEEeCCCCCCH-----------HHHHHHHHHHHhccCC--cEEEEEeCCCCCCcHHHhc-
Q psy2281          63 -------------------VIILNETDHLTR-----------EAQQALRRTMEKYITT--CRLILCANSMSQVIPAIRS-  109 (287)
Q Consensus        63 -------------------~i~ide~d~l~~-----------~~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~~l~s-  109 (287)
                                         +|+|||+|.+.+           ...+.|+..|+....+  ..++.++|.++.+.+++++ 
T Consensus       281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~  360 (806)
T 3cf2_A          281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRF  360 (806)
T ss_dssp             HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTST
T ss_pred             HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCC
Confidence                               999999998742           1234566666665433  3455666777889999988 


Q ss_pred             -ccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281         110 -RCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR  153 (287)
Q Consensus       110 -r~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G  153 (287)
                       |+. .+.++.|+.++..++++..++...+. ++..+..++..+.|
T Consensus       361 GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~G  405 (806)
T 3cf2_A          361 GRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHG  405 (806)
T ss_dssp             TSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCS
T ss_pred             cccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCC
Confidence             774 68999999999999988776554432 22235556665443

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.36  E-value=2.9e-12  Score=101.30  Aligned_cols=96  Identities=24%  Similarity=0.353  Sum_probs=70.8

Q ss_pred             ccccCCCCCCCccC----cHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CC----------
Q psy2281           5 VDKYRPNNLQKLDF----HCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELY---GP----------   62 (287)
Q Consensus         5 ~~k~~p~~~~~~~~----~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~----------   62 (287)
                      ++||++.+|+++++    +..+...+..+++     +|+.  ++|+||||+||||+++++++.+.   +.          
T Consensus         1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~   78 (180)
T 3ec2_A            1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKG--LTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL   78 (180)
T ss_dssp             CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCE--EEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred             CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCE--EEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            46899999999986    3455666666664     3444  99999999999999999998873   21          


Q ss_pred             ------------------------EEEEeCCC--CCCHHHHHHHHHHHHhcc-CCcEEEEEeCCCCC
Q psy2281          63 ------------------------VIILNETD--HLTREAQQALRRTMEKYI-TTCRLILCANSMSQ  102 (287)
Q Consensus        63 ------------------------~i~ide~d--~l~~~~~~~l~~~i~~~~-~~~~~i~~~~~~~~  102 (287)
                                              ++++||++  .++...+..+...+.... +...++++++....
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~  145 (180)
T 3ec2_A           79 IFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ  145 (180)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred             HHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence                                    89999998  456666667777776553 45567777766544

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.35  E-value=6.3e-12  Score=110.50  Aligned_cols=135  Identities=21%  Similarity=0.296  Sum_probs=94.5

Q ss_pred             ccCcHHHHHHHHHHHh-------------cC--CCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------
Q psy2281          16 LDFHCKQANHLRNLLK-------------EG--DFPHLLFYGPSGAGKKTRIMALLKELYGP------------------   62 (287)
Q Consensus        16 ~~~~~~~~~~l~~~~~-------------~g--~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------   62 (287)
                      ++|+..+++.+...+.             ..  ...+++|+||||||||++++++++.+..+                  
T Consensus        17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~   96 (363)
T 3hws_A           17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED   96 (363)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence            5888888888777662             11  12349999999999999999999876433                  


Q ss_pred             ----------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhc-------------------
Q psy2281          63 ----------------------VIILNETDHLTRE--------------AQQALRRTMEKY-------------------   87 (287)
Q Consensus        63 ----------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~-------------------   87 (287)
                                            ++++||+|.+...              .++.|++.|+..                   
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~  176 (363)
T 3hws_A           97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ  176 (363)
T ss_dssp             HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred             HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence                                  8999999976643              688899988821                   


Q ss_pred             --cCCcEEEEEeCCC----------CC-----------------------------------CcHHHhcccce-eecCCC
Q psy2281          88 --ITTCRLILCANSM----------SQ-----------------------------------VIPAIRSRCLC-IRIPAP  119 (287)
Q Consensus        88 --~~~~~~i~~~~~~----------~~-----------------------------------l~~~l~sr~~~-~~~~~~  119 (287)
                        ..+..++++++..          ..                                   +.+.+.+|+.. +.|.++
T Consensus       177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl  256 (363)
T 3hws_A          177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL  256 (363)
T ss_dssp             CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred             EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence              1223344444421          11                                   57888999964 568999


Q ss_pred             CHHHHHHHHHH----HHH-------HhC--CCCCHHHHHHHHHH
Q psy2281         120 THEEIVSVLTN----ICK-------KEG--LTIPPEFALRLAQQ  150 (287)
Q Consensus       120 ~~~~~~~~l~~----~~~-------~~~--~~~~~~~~~~l~~~  150 (287)
                      +.+++.+++..    +++       ..+  +.+++++.+.+++.
T Consensus       257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~  300 (363)
T 3hws_A          257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKK  300 (363)
T ss_dssp             CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHh
Confidence            99888877765    322       123  34688898888864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.35  E-value=2.9e-11  Score=103.14  Aligned_cols=117  Identities=16%  Similarity=0.249  Sum_probs=79.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--------------------------------------EEEEeCCCCCCHH----
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--------------------------------------VIILNETDHLTRE----   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------------------------~i~ide~d~l~~~----   75 (287)
                      ++|+||||||||++++++++.+..+                                      +++|||+|.+...    
T Consensus        39 lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~  118 (293)
T 3t15_A           39 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT  118 (293)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---------
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCC
Confidence            8899999999999999999887533                                      8999999876541    


Q ss_pred             ---------HHHHHHHHHHhc-------------cCCcEEEEEeCCCCCCcHHHhc--ccceeecCCCCHHHHHHHHHHH
Q psy2281          76 ---------AQQALRRTMEKY-------------ITTCRLILCANSMSQVIPAIRS--RCLCIRIPAPTHEEIVSVLTNI  131 (287)
Q Consensus        76 ---------~~~~l~~~i~~~-------------~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~~~~~~~~~~l~~~  131 (287)
                               .+..|+..++..             ..+..+|.++|..+.+.+++++  |+...-+ .|+.++..++++..
T Consensus       119 ~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~  197 (293)
T 3t15_A          119 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGI  197 (293)
T ss_dssp             -----CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHh
Confidence                     235666666521             2345677888888889999885  6643223 46999999999988


Q ss_pred             HHHhCCCCCHHHHHHHHHHcCCcHH
Q psy2281         132 CKKEGLTIPPEFALRLAQQSDRNLR  156 (287)
Q Consensus       132 ~~~~~~~~~~~~~~~l~~~s~G~~r  156 (287)
                      +...++. .+...+.....++.++.
T Consensus       198 ~~~~~~~-~~~l~~~~~~~~~~~l~  221 (293)
T 3t15_A          198 FRTDNVP-AEDVVKIVDNFPGQSID  221 (293)
T ss_dssp             HGGGCCC-HHHHHHHHHHSCSCCHH
T ss_pred             ccCCCCC-HHHHHHHhCCCCcccHH
Confidence            8877774 23334445556776664

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.34  E-value=1e-15  Score=142.54  Aligned_cols=154  Identities=16%  Similarity=0.090  Sum_probs=104.6

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~  108 (287)
                      ..|++  +.|.||||+|||||+++|++.+.+.  .|.++              ..+.+++|+....+..++.+.+.....
T Consensus       380 ~~Gei--~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~--------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~  443 (607)
T 3bk7_A          380 RKGEV--IGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--------------LTVAYKPQYIKAEYEGTVYELLSKIDS  443 (607)
T ss_dssp             ETTCE--EEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC--------------CCEEEECSSCCCCCSSBHHHHHHHHHH
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHhcCCCCCceEEEEe--------------eEEEEEecCccCCCCCcHHHHHHhhhc
Confidence            46888  9999999999999999999987654  22210              124445554322111111111100000


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW  183 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~  183 (287)
                      ..     +      ...+.+.++++..++  .+...+.+.++|||+.||     |+...+.++++|||++++|......+
T Consensus       444 ~~-----~------~~~~~~~~~l~~~~l--~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l  510 (607)
T 3bk7_A          444 SK-----L------NSNFYKTELLKPLGI--IDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV  510 (607)
T ss_dssp             HH-----H------HCHHHHHHTHHHHTC--TTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred             cC-----C------CHHHHHHHHHHHcCC--chHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHH
Confidence            00     0      112345566777777  445566788999999998     55566789999999999999999999


Q ss_pred             HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .+.+.++.++     ++++|+...+..++|+++.+
T Consensus       511 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl  545 (607)
T 3bk7_A          511 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF  545 (607)
T ss_dssp             HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999998653     78999999999999987644

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.34  E-value=2.4e-14  Score=133.42  Aligned_cols=172  Identities=16%  Similarity=0.100  Sum_probs=116.4

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|+.  +.+.|||||||||+++++++.+.+.  .|.+|+.+.- .-....+++.+.+++|++.++ ..+..+
T Consensus       360 ~~isl~i~~Ge~--~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~-~~~~~~~r~~i~~v~Q~~~lf-~~tv~e  435 (587)
T 3qf4_A          360 SGVNFSVKPGSL--VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR-TVKLKDLRGHISAVPQETVLF-SGTIKE  435 (587)
T ss_dssp             EEEEEEECTTCE--EEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGG-GBCHHHHHHHEEEECSSCCCC-SEEHHH
T ss_pred             eceEEEEcCCCE--EEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcc-cCCHHHHHhheEEECCCCcCc-CccHHH
Confidence            344444577888  9999999999999999999998776  8899988742 222445778899999987654 334555


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC---------CCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT---------IPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      |+..+         .+..+++++.+.+    +..++.         ++....+...++|||+.||     |+...|++++
T Consensus       436 ni~~~---------~~~~~~~~~~~~~----~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ill  502 (587)
T 3qf4_A          436 NLKWG---------REDATDDEIVEAA----KIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLI  502 (587)
T ss_dssp             HHTTT---------CSSCCHHHHHHHH----HHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             HHhcc---------CCCCCHHHHHHHH----HHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEE
Confidence            54321         1123444443333    222320         0001112234678888777     7777789999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|||++++|+.+...+.+.+.++.+.   ++++|+...+. .+|+++.+
T Consensus       503 lDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl  550 (587)
T 3qf4_A          503 LDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVL  550 (587)
T ss_dssp             EESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEE
T ss_pred             EECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEE
Confidence            99999999999888888877776443   77999998775 57777644

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.31  E-value=1.2e-15  Score=140.60  Aligned_cols=154  Identities=17%  Similarity=0.103  Sum_probs=103.2

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~  108 (287)
                      ..|++  +.|.||||||||||+++|++...+.  .|.++              ..+.+++|+....+..+    +..-+.
T Consensus       310 ~~Ge~--~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~--------------~~i~~v~Q~~~~~~~~t----v~~~~~  369 (538)
T 1yqt_A          310 KKGEV--IGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD--------------LTVAYKPQYIKADYEGT----VYELLS  369 (538)
T ss_dssp             ETTCE--EEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC--------------CCEEEECSSCCCCCSSB----HHHHHH
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC--------------ceEEEEecCCcCCCCCc----HHHHHH
Confidence            46888  9999999999999999999987654  22210              11444444432211111    111111


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccH
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDW  183 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~  183 (287)
                      . ...-.+  ..    .+.+..+++..++  .+...+.+.++|||+.||     ++...+.++++||||+++|......+
T Consensus       370 ~-~~~~~~--~~----~~~~~~~l~~~~l--~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i  440 (538)
T 1yqt_A          370 K-IDASKL--NS----NFYKTELLKPLGI--IDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAV  440 (538)
T ss_dssp             H-HHHHHH--TC----HHHHHHTTTTTTC--GGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHH
T ss_pred             h-hhccCC--CH----HHHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence            0 000000  01    2344556666666  455567788999999998     55556789999999999999999999


Q ss_pred             HHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         184 KIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       184 ~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .+.+.++.++     ++++|+...+..++|+++.+
T Consensus       441 ~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl  475 (538)
T 1yqt_A          441 SRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF  475 (538)
T ss_dssp             HHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999998643     78999999999999987754

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.31  E-value=2.7e-12  Score=122.20  Aligned_cols=150  Identities=24%  Similarity=0.281  Sum_probs=93.0

Q ss_pred             CCCCCccCcHHHHHHHHHHHh-----------cCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLLK-----------EGDFPH--LLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      .+++++.|..++++.|...+.           -|..|+  ++|+||||||||.++++++++...+               
T Consensus       474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vG  553 (806)
T 3cf2_A          474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFG  553 (806)
T ss_dssp             CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCS
T ss_pred             CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccc
Confidence            457788888888888887762           122222  9999999999999999999988654               


Q ss_pred             -------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhccCC-cEEE-EEeCCCCCCcHHH
Q psy2281          63 -------------------VIILNETDHLTRE--------------AQQALRRTMEKYITT-CRLI-LCANSMSQVIPAI  107 (287)
Q Consensus        63 -------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~~~-~~~i-~~~~~~~~l~~~l  107 (287)
                                         +|+|||+|.+...              ..+.|+..|+..... ..++ .++|.++.+++++
T Consensus       554 ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~Al  633 (806)
T 3cf2_A          554 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAI  633 (806)
T ss_dssp             SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHH
T ss_pred             hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhH
Confidence                               9999999987421              134567777765443 3344 4556678899999


Q ss_pred             hc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH----HHcCCcHHHHHHH
Q psy2281         108 RS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLA----QQSDRNLRRAILM  161 (287)
Q Consensus       108 ~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~----~~s~G~~r~al~~  161 (287)
                      ++  |+ ..+.++.|+.++..++++..+++..+. ++..+..++    .+||.|+...+..
T Consensus       634 lRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~  693 (806)
T 3cf2_A          634 LRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQR  693 (806)
T ss_dssp             HSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHH
T ss_pred             cCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence            87  77 468899899888888888776655442 112233333    4778888875443

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.30  E-value=4e-14  Score=131.60  Aligned_cols=172  Identities=15%  Similarity=0.125  Sum_probs=105.0

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC-------CC-HHHHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH-------LT-REAQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~-------l~-~~~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      +.+|++  +.|.||||+|||||+++|++.+.++  .+  +....       +. ...+..+.....   ++...+.....
T Consensus       100 ~~~Gei--~~LvGpNGaGKSTLLkiL~Gll~P~~G~i--~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~  172 (608)
T 3j16_B          100 PRPGQV--LGLVGTNGIGKSTALKILAGKQKPNLGRF--DDPPEWQEIIKYFRGSELQNYFTKMLE---DDIKAIIKPQY  172 (608)
T ss_dssp             CCTTSE--EEEECCTTSSHHHHHHHHHTSSCCCTTTT--CCSSCHHHHHHHTTTSTHHHHHHHHHH---TSCCCEEECCC
T ss_pred             CCCCCE--EEEECCCCChHHHHHHHHhcCCCCCCceE--ecccchhhhhheecChhhhhhhhHHHH---Hhhhhhhchhh
Confidence            357888  9999999999999999999988654  11  10000       00 001111111111   12222222222


Q ss_pred             CCCCcHHHhccc----ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281         100 MSQVIPAIRSRC----LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus       100 ~~~l~~~l~sr~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      .+++........    ..+....   +...+.+.++++..|+  +....+.+.++|+|+.||     |+...+.++++||
T Consensus       173 ~~~~~~~~~~~~~~v~~~l~~~~---~~~~~~~~~~l~~~gl--~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDE  247 (608)
T 3j16_B          173 VDNIPRAIKGPVQKVGELLKLRM---EKSPEDVKRYIKILQL--ENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE  247 (608)
T ss_dssp             TTTHHHHCSSSSSHHHHHHHHHC---CSCHHHHHHHHHHHTC--TGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             hhhhhhhhcchhhHHHHHHhhhh---hhHHHHHHHHHHHcCC--cchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            233221111000    0000000   0112456667777787  555667788899999888     6666688999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|+.....+.+.+.++.+.    ++++|+...+..++|+++.+
T Consensus       248 Pts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl  294 (608)
T 3j16_B          248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII  294 (608)
T ss_dssp             TTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred             cccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999998888888888887654    77999999999998887644

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.30  E-value=2e-11  Score=108.69  Aligned_cols=158  Identities=20%  Similarity=0.287  Sum_probs=107.9

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHH-h---cC---CCCcEEE--eCCCCCcHHHHHHHHHHHhCC-------C-------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLL-K---EG---DFPHLLF--YGPSGAGKKTRIMALLKELYG-------P-------   62 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~-~---~g---~~~~~~l--~Gp~G~GKTtl~~~l~~~~~~-------~-------   62 (287)
                      .+|.|   +.++|.....+.+...+ .   .|   ..++++|  +||+|+||||+++.+++....       .       
T Consensus        17 ~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           17 ENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             TTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            34555   56888887777776665 3   23   3334888  999999999999998765310       0       


Q ss_pred             -----------------------------------------------EEEEeCCCCCCH------HHHHHHHHHHHhcc-
Q psy2281          63 -----------------------------------------------VIILNETDHLTR------EAQQALRRTMEKYI-   88 (287)
Q Consensus        63 -----------------------------------------------~i~ide~d~l~~------~~~~~l~~~i~~~~-   88 (287)
                                                                     +|+|||++.+..      +....+.+.+.... 
T Consensus        94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~  173 (412)
T 1w5s_A           94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS  173 (412)
T ss_dssp             GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc
Confidence                                                           789999987632      44444555555443 


Q ss_pred             ----CCcEEEEEeCCCC---CCc---HHHhcccc-eeecCCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHcC---
Q psy2281          89 ----TTCRLILCANSMS---QVI---PAIRSRCL-CIRIPAPTHEEIVSVLTNICKKEGL--TIPPEFALRLAQQSD---  152 (287)
Q Consensus        89 ----~~~~~i~~~~~~~---~l~---~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~s~---  152 (287)
                          ....++++++..+   .+.   +.+.+++. .+.+++++.++..+.+...+...+.  .++++..+.+.+.++   
T Consensus       174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  253 (412)
T 1w5s_A          174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK  253 (412)
T ss_dssp             TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGG
T ss_pred             CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhc
Confidence                2334555554433   233   45556653 3889999999999999887765332  458899999999999   


Q ss_pred             ---CcHHHHHHHHHHHh
Q psy2281         153 ---RNLRRAILMCEASK  166 (287)
Q Consensus       153 ---G~~r~al~~l~~~~  166 (287)
                         |+.+.++..+....
T Consensus       254 ~~~G~p~~~~~l~~~a~  270 (412)
T 1w5s_A          254 GGDGSARRAIVALKMAC  270 (412)
T ss_dssp             TSCCCHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHH
Confidence               99999888776544

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.28  E-value=1.1e-15  Score=129.98  Aligned_cols=148  Identities=16%  Similarity=0.147  Sum_probs=90.9

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~  108 (287)
                      ++|++  ++|.||||||||||+++|++...+.  .|.+++              .+.+++|+..++. .+..+++. +  
T Consensus        62 ~~Ge~--~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~l~~-~tv~enl~-~--  121 (290)
T 2bbs_A           62 ERGQL--LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------RISFCSQNSWIMP-GTIKENII-G--  121 (290)
T ss_dssp             CTTCE--EEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------CEEEECSSCCCCS-SBHHHHHH-T--
T ss_pred             cCCCE--EEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------EEEEEeCCCccCc-ccHHHHhh-C--
Confidence            56777  9999999999999999999987654  666765              1555666554322 13333332 1  


Q ss_pred             cccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-----------HHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-----------ALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                             + ......    ....++..++  .+..           .+...++|+|+.||     |+...++++++|||+
T Consensus       122 -------~-~~~~~~----~~~~~~~~~l--~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPt  187 (290)
T 2bbs_A          122 -------V-SYDEYR----YRSVIKACQL--EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF  187 (290)
T ss_dssp             -------T-CCCHHH----HHHHHHHTTC--HHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred             -------c-ccchHH----HHHHHHHhCh--HHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCc
Confidence                   1 011111    1222233333  1111           12245789998888     666668899999999


Q ss_pred             ccccCccCccHHHHH-HHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYI-RDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i-~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|+.....+.+.+ .++.+.   ++++|+...+. .+|+++.+
T Consensus       188 s~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l  231 (290)
T 2bbs_A          188 GYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL  231 (290)
T ss_dssp             TTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEE
T ss_pred             ccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEE
Confidence            999988776665542 233222   77999987765 47776543

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.28  E-value=5.8e-11  Score=107.97  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=97.6

Q ss_pred             CCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------------------
Q psy2281          14 QKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------------------   62 (287)
                      ..++|+..+++.+...+..|..  ++|+||||+|||++++++++.....                               
T Consensus        22 ~~ivGq~~~i~~l~~al~~~~~--VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~   99 (500)
T 3nbx_X           22 KGLYERSHAIRLCLLAALSGES--VFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRY   99 (500)
T ss_dssp             TTCSSCHHHHHHHHHHHHHTCE--EEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC----------
T ss_pred             hhhHHHHHHHHHHHHHHhcCCe--eEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhhchhH
Confidence            3578999999888888877765  9999999999999999998755210                               


Q ss_pred             ------------EEEEeCCCCCCHHHHHHHHHHHHhc---------cCCcEE-EEEeCCCCC---CcHHHhcccc-eeec
Q psy2281          63 ------------VIILNETDHLTREAQQALRRTMEKY---------ITTCRL-ILCANSMSQ---VIPAIRSRCL-CIRI  116 (287)
Q Consensus        63 ------------~i~ide~d~l~~~~~~~l~~~i~~~---------~~~~~~-i~~~~~~~~---l~~~l~sr~~-~~~~  116 (287)
                                  ++++||++.++...++.|+..|+.-         ....++ +.++|..+.   ..+++.+|+. .+.+
T Consensus       100 ~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v  179 (500)
T 3nbx_X          100 ERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWL  179 (500)
T ss_dssp             CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEEC
T ss_pred             HhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHH
Confidence                        5999999999999999999999731         112234 555554322   4568999985 3677


Q ss_pred             CCCCH-HHHHHHHHHHH-----------------------HHhCCCCCHHHHHHHHHHc
Q psy2281         117 PAPTH-EEIVSVLTNIC-----------------------KKEGLTIPPEFALRLAQQS  151 (287)
Q Consensus       117 ~~~~~-~~~~~~l~~~~-----------------------~~~~~~~~~~~~~~l~~~s  151 (287)
                      +.|+. ++...++....                       ...++.++++..++++++.
T Consensus       180 ~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~  238 (500)
T 3nbx_X          180 DKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLR  238 (500)
T ss_dssp             CSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHH
Confidence            77765 45555554322                       1125667888888888765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.27  E-value=1.7e-14  Score=144.97  Aligned_cols=170  Identities=14%  Similarity=0.062  Sum_probs=114.7

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      .+.++..+++|+.  +.|+||+||||||++++|++...+.  .|.+|+.+.- .-....+++.+.+++|++.++ ..+..
T Consensus       406 L~~isl~i~~G~~--~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~-~~~~~~~r~~i~~v~Q~~~l~-~~ti~  481 (1284)
T 3g5u_A          406 LKGLNLKVKSGQT--VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR-TINVRYLREIIGVVSQEPVLF-ATTIA  481 (1284)
T ss_dssp             EEEEEEEECTTCE--EEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGG-GSCHHHHHHHEEEECSSCCCC-SSCHH
T ss_pred             eecceEEEcCCCE--EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHH-hCCHHHHHhheEEEcCCCccC-CccHH
Confidence            3344444578888  9999999999999999999998776  8899987632 222456778899999988544 33555


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-----------HHHHHHcCCcHHH-----HHHHHHH
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-----------LRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      +|+..+         ....+.+++.+.++    ..++  .+...           +...++|||+.||     |+...++
T Consensus       482 eNi~~g---------~~~~~~~~~~~~~~----~~~~--~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~  546 (1284)
T 3g5u_A          482 ENIRYG---------REDVTMDEIEKAVK----EANA--YDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPK  546 (1284)
T ss_dssp             HHHHHH---------CSSCCHHHHHHHHH----HTTC--HHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhcC---------CCCCCHHHHHHHHH----HhCc--HHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCC
Confidence            555433         12345555444433    2222  11111           1123578887777     7777889


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYE  212 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~  212 (287)
                      ++++|||++++|..+...+.+.+..+.+.   ++++|+...+.. +|+++.
T Consensus       547 iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~v  596 (1284)
T 3g5u_A          547 ILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAG  596 (1284)
T ss_dssp             EEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEE
Confidence            99999999999988776666666655433   778999888765 666553

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.24  E-value=2.6e-14  Score=132.93  Aligned_cols=151  Identities=15%  Similarity=0.062  Sum_probs=95.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP  117 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~  117 (287)
                      +.|.||||+|||||+++|++...+.    .+.+ +.       ...+.+.+++....+..    .+..-+..+.   .-.
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p~----~G~~-~~-------~~~i~~~~q~~~~~~~~----tv~e~~~~~~---~~~  441 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKPD----EGQD-IP-------KLNVSMKPQKIAPKFPG----TVRQLFFKKI---RGQ  441 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCCS----BCCC-CC-------SCCEEEECSSCCCCCCS----BHHHHHHHHC---SST
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCCC----CCcC-cc-------CCcEEEecccccccCCc----cHHHHHHHHh---hcc
Confidence            8999999999999999999987653    1110 00       00122222221110000    0111111110   000


Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHH
Q psy2281         118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAK  192 (287)
Q Consensus       118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~  192 (287)
                      ....    .....+++..++  .+...+.+.++|||+.||     |+...|.++++||||+++|......+.+.+.++.+
T Consensus       442 ~~~~----~~~~~~l~~l~l--~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~  515 (608)
T 3j16_B          442 FLNP----QFQTDVVKPLRI--DDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL  515 (608)
T ss_dssp             TTSH----HHHHHTHHHHTS--TTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             cccH----HHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence            1111    233455666676  344456677899999988     55556889999999999999998889999998864


Q ss_pred             H-----HHhccChhHHHHHHHHHHHH
Q psy2281         193 L-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       193 ~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +     ++++|+.+.+..++|+++.+
T Consensus       516 ~~g~tviivtHdl~~~~~~aDrvivl  541 (608)
T 3j16_B          516 HNKKTAFIVEHDFIMATYLADKVIVF  541 (608)
T ss_dssp             HHTCEEEEECSCHHHHHHHCSEEEEC
T ss_pred             hCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            3     78999999999999988744

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.22  E-value=1.3e-10  Score=98.02  Aligned_cols=126  Identities=22%  Similarity=0.253  Sum_probs=82.8

Q ss_pred             CCCCCCCccCcHHHHHHHHHHH----------hc-C-CCCc-EEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281           9 RPNNLQKLDFHCKQANHLRNLL----------KE-G-DFPH-LLFYGPSGAGKKTRIMALLKELYGP-------------   62 (287)
Q Consensus         9 ~p~~~~~~~~~~~~~~~l~~~~----------~~-g-~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~-------------   62 (287)
                      ...+|+++.|..++++.+...+          +. + ..|. ++|+|||||||||+++++++.....             
T Consensus         5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~   84 (274)
T 2x8a_A            5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMY   84 (274)
T ss_dssp             -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSST
T ss_pred             CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhh
Confidence            4467899999888888887654          11 1 2233 9999999999999999999987532             


Q ss_pred             ---------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhcc-CCcE-EEEEeCCCCCCcHHHh
Q psy2281          63 ---------------------VIILNETDHLTRE-----------AQQALRRTMEKYI-TTCR-LILCANSMSQVIPAIR  108 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~-~~~~-~i~~~~~~~~l~~~l~  108 (287)
                                           ++++||++.+...           ..+.+...+.... +... ++.+++.++.+.++++
T Consensus        85 ~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~  164 (274)
T 2x8a_A           85 VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAIL  164 (274)
T ss_dssp             THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHH
T ss_pred             hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhc
Confidence                                 7889999875311           1223333444322 2233 3445666777888888


Q ss_pred             c--ccc-eeecCCCCHHHHHHHHHHHHHH
Q psy2281         109 S--RCL-CIRIPAPTHEEIVSVLTNICKK  134 (287)
Q Consensus       109 s--r~~-~~~~~~~~~~~~~~~l~~~~~~  134 (287)
                      +  |+. .+.++.|+.++..++++..++.
T Consensus       165 r~gRfd~~i~~~~P~~~~r~~il~~~~~~  193 (274)
T 2x8a_A          165 RPGRLDKTLFVGLPPPADRLAILKTITKN  193 (274)
T ss_dssp             STTSSCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred             CcccCCeEEEeCCcCHHHHHHHHHHHHhc
Confidence            6  774 5889999999999999887653

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.22  E-value=3.8e-13  Score=135.61  Aligned_cols=162  Identities=17%  Similarity=0.080  Sum_probs=110.6

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|+.  +.++||+||||||++++|.++..+.  .|.+|+.|. ..-....+++.+.+++|++. ++..|..+
T Consensus       435 ~~isl~i~~G~~--vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i-~~~~~~~lr~~i~~v~Q~~~-Lf~~TI~e  510 (1321)
T 4f4c_A          435 RGMNLRVNAGQT--VALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDV-RDINLEFLRKNVAVVSQEPA-LFNCTIEE  510 (1321)
T ss_dssp             EEEEEEECTTCE--EEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEET-TTSCHHHHHHHEEEECSSCC-CCSEEHHH
T ss_pred             eceEEeecCCcE--EEEEecCCCcHHHHHHHhccccccccCcccCCCccc-hhccHHHHhhcccccCCcce-eeCCchhH
Confidence            344444578888  9999999999999999999998877  899998763 22235678889999999874 45556667


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHH-----------HHHHcCCcHHH-----HHHHHHHH
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALR-----------LAQQSDRNLRR-----AILMCEAS  165 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----------l~~~s~G~~r~-----al~~l~~~  165 (287)
                      |+..+         -+..+++++.+.++    ..++  .+.....           =..+|||+.||     |+...+.+
T Consensus       511 NI~~g---------~~~~~~~~v~~a~~----~a~l--~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~I  575 (1321)
T 4f4c_A          511 NISLG---------KEGITREEMVAACK----MANA--EKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI  575 (1321)
T ss_dssp             HHHTT---------CTTCCHHHHHHHHH----HTTC--HHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred             HHhhh---------cccchHHHHHHHHH----Hccc--hhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCE
Confidence            76432         12345555554443    3332  1111110           02356666555     77777899


Q ss_pred             hhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHH
Q psy2281         166 KVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLL  204 (287)
Q Consensus       166 ~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~  204 (287)
                      +++|||++++|..+...+.+.+.++.+.   |+++|....+.
T Consensus       576 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~  617 (1321)
T 4f4c_A          576 LLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR  617 (1321)
T ss_dssp             EEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH
Confidence            9999999999998877777777776554   67888765443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.22  E-value=3.5e-13  Score=124.09  Aligned_cols=85  Identities=15%  Similarity=0.059  Sum_probs=69.5

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhc
Q psy2281         127 VLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISE  197 (287)
Q Consensus       127 ~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~  197 (287)
                      .+.++++..|+  +....+.+.++|+|+.||     |+...|+++++||||+++|+.....+.+.+.++.+.    |+++
T Consensus       138 ~~~~~l~~lgl--~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vs  215 (538)
T 1yqt_A          138 KLEEVVKALEL--ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVE  215 (538)
T ss_dssp             CHHHHHHHTTC--TTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHcCC--ChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45667777787  444556788999999888     666778999999999999999888888889888764    7899


Q ss_pred             cChhHHHHHHHHHHHH
Q psy2281         198 QSPKKLLEVRTRLYEL  213 (287)
Q Consensus       198 ~~~~~~~~~~~~~~~l  213 (287)
                      |+...+..++|+++.+
T Consensus       216 Hd~~~~~~~~dri~vl  231 (538)
T 1yqt_A          216 HDLAVLDYLSDIIHVV  231 (538)
T ss_dssp             SCHHHHHHHCSEEEEE
T ss_pred             CCHHHHHHhCCEEEEE
Confidence            9999999988887643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.21  E-value=3.2e-13  Score=125.70  Aligned_cols=85  Identities=18%  Similarity=0.062  Sum_probs=69.5

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhc
Q psy2281         127 VLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISE  197 (287)
Q Consensus       127 ~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~  197 (287)
                      .+.++++..|+  ++...+.+.++|+|+.||     |+...|+++++|||++++|......+.+.+.++.+.    |+++
T Consensus       208 ~~~~~L~~lgL--~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivs  285 (607)
T 3bk7_A          208 KFEEVVKELEL--ENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE  285 (607)
T ss_dssp             CHHHHHHHTTC--TTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHHHHHHHcCC--CchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            45567777777  455566788999999998     677778999999999999999988888999988764    7899


Q ss_pred             cChhHHHHHHHHHHHH
Q psy2281         198 QSPKKLLEVRTRLYEL  213 (287)
Q Consensus       198 ~~~~~~~~~~~~~~~l  213 (287)
                      |+...+..++|+++.+
T Consensus       286 Hdl~~~~~~adri~vl  301 (607)
T 3bk7_A          286 HDLAVLDYLSDVIHVV  301 (607)
T ss_dssp             SCHHHHHHHCSEEEEE
T ss_pred             cChHHHHhhCCEEEEE
Confidence            9999988888877543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.21  E-value=1.8e-14  Score=144.80  Aligned_cols=175  Identities=15%  Similarity=0.090  Sum_probs=116.0

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      .+.++..+++|+.  +.|+||+|+||||++++|++...+.  .|.+|+.+.-. -....+++.+.+++|++.+ +..+..
T Consensus      1049 l~~vsl~i~~Ge~--v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~-~~~~~~r~~i~~v~Q~~~l-~~~ti~ 1124 (1284)
T 3g5u_A         1049 LQGLSLEVKKGQT--LALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ-LNVQWLRAQLGIVSQEPIL-FDCSIA 1124 (1284)
T ss_dssp             BSSCCEEECSSSE--EEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS-SCHHHHTTSCEEEESSCCC-CSSBHH
T ss_pred             ecceeEEEcCCCE--EEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc-CCHHHHHhceEEECCCCcc-ccccHH
Confidence            4445555578888  9999999999999999999988776  89999987432 1234567778888888743 333334


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCHH----HHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPPE----FALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~----~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +|+..+..       ....+.+++.+.++.    .++     .+++.    .-+.-.++|||+.||     |+...++++
T Consensus      1125 eNi~~~~~-------~~~~~~~~i~~~~~~----~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iL 1193 (1284)
T 3g5u_A         1125 ENIAYGDN-------SRVVSYEEIVRAAKE----ANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL 1193 (1284)
T ss_dssp             HHHTCCCS-------SCCCCHHHHHHHHHH----HTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSE
T ss_pred             HHHhccCC-------CCCCCHHHHHHHHHH----hCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEE
Confidence            44432110       112355555544433    222     00100    011123578888887     777778999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++||||+++|..+...+.+.+.+..+.   ++++|+...+.. +|+++.+
T Consensus      1194 iLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~-~dri~vl 1242 (1284)
T 3g5u_A         1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN-ADLIVVI 1242 (1284)
T ss_dssp             EEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS-CSEEEEE
T ss_pred             EEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc-CCEEEEE
Confidence            999999999988877777777664332   779999988755 7877644

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.21  E-value=2.9e-13  Score=124.36  Aligned_cols=84  Identities=12%  Similarity=-0.003  Sum_probs=66.1

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhcc
Q psy2281         127 VLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQ  198 (287)
Q Consensus       127 ~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~  198 (287)
                      .+..+++..++  .....+.+.++|+|+.||     |+...|+++++|||++++|......+.+.+.++.+.   |+++|
T Consensus       118 ~~~~~l~~l~l--~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsH  195 (538)
T 3ozx_A          118 KKDEVKELLNM--TNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDH  195 (538)
T ss_dssp             CHHHHHHHTTC--GGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HHHHHHHHcCC--chhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            34556666676  444556678899999888     666778999999999999998888888888877533   77999


Q ss_pred             ChhHHHHHHHHHHH
Q psy2281         199 SPKKLLEVRTRLYE  212 (287)
Q Consensus       199 ~~~~~~~~~~~~~~  212 (287)
                      +...+..++|++..
T Consensus       196 dl~~~~~~~d~i~v  209 (538)
T 3ozx_A          196 DLIVLDYLTDLIHI  209 (538)
T ss_dssp             CHHHHHHHCSEEEE
T ss_pred             ChHHHHhhCCEEEE
Confidence            99999998887653

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.20  E-value=3.2e-14  Score=117.63  Aligned_cols=160  Identities=14%  Similarity=0.104  Sum_probs=96.4

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|++  ++|.||||||||||+++|++.+.+.  .|.+++              .+.+++|++.+ +..+..++
T Consensus        23 ~vsl~i~~Ge~--~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g--------------~i~~v~Q~~~~-~~~tv~en   85 (237)
T 2cbz_A           23 GITFSIPEGAL--VAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG--------------SVAYVPQQAWI-QNDSLREN   85 (237)
T ss_dssp             EEEEEECTTCE--EEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS--------------CEEEECSSCCC-CSEEHHHH
T ss_pred             eeEEEECCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCceEEECC--------------EEEEEcCCCcC-CCcCHHHH
Confidence            34444578888  9999999999999999999987654  677776              15556665432 22233333


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHH--HHHHhCCCCCH----HHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTN--ICKKEGLTIPP----EFALRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~----~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      +..+          .....+...+.++.  ..+..+.. +.    ...+.+.++|+|+.||     |+...|+++++|||
T Consensus        86 l~~~----------~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEP  154 (237)
T 2cbz_A           86 ILFG----------CQLEEPYYRSVIQACALLPDLEIL-PSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDP  154 (237)
T ss_dssp             HHTT----------SCCCTTHHHHHHHHTTCHHHHTTS-TTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEEST
T ss_pred             hhCc----------cccCHHHHHHHHHHHhhHHHHHhc-cccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence            3211          01111111111111  11111110 00    0123356788888888     77777899999999


Q ss_pred             cccccCccCccHHHHHH---HHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIR---DTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~---~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++++|+.....+.+.+.   ++.+.   ++++|+...+. .+|+++.+
T Consensus       155 ts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l  201 (237)
T 2cbz_A          155 LSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVM  201 (237)
T ss_dssp             TTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEE
T ss_pred             ccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEE
Confidence            99999888777766663   22222   67899988765 57776543

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.20  E-value=9.4e-11  Score=89.30  Aligned_cols=86  Identities=24%  Similarity=0.254  Sum_probs=64.4

Q ss_pred             CccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------------CEEE
Q psy2281          15 KLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELYG---------------------------PVII   65 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------------~~i~   65 (287)
                      +++|+......+...++.  ....+++|+||+|||||+++++++.....                           .+++
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~a~~g~l~   81 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNAPQLNDFIALAQGGTLV   81 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTSSCHHHHHHHHTTSCEE
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcchhhhcHHHHcCCcEEE
Confidence            467777666655555521  12233999999999999999999886411                           1899


Q ss_pred             EeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          66 LNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        66 ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      +||++.++.+.|..|++.+.....+.+++.++|..
T Consensus        82 ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~  116 (145)
T 3n70_A           82 LSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS  116 (145)
T ss_dssp             EECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred             EcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence            99999999999999999997776677888887764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.19  E-value=3.2e-13  Score=127.87  Aligned_cols=80  Identities=16%  Similarity=0.090  Sum_probs=60.4

Q ss_pred             HHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHHHH--HhhcCCCcccccCccCccHHHHHHHHHHH----HHhcc
Q psy2281         131 ICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMCEA--SKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQ  198 (287)
Q Consensus       131 ~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l~~--~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~  198 (287)
                      .++..|+.  +. ..+.+.++|+|+.||     |+...|+  ++++|||++++|+.....+.+.+.++.+.    |+++|
T Consensus       185 ~l~~~gL~--~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH  262 (670)
T 3ux8_A          185 FLQNVGLD--YLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH  262 (670)
T ss_dssp             HHHHTTCT--TCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             HHHHcCCc--hhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            35556662  22 245677899999988     4444556  99999999999999999999999998754    78999


Q ss_pred             ChhHHHHHHHHHHHH
Q psy2281         199 SPKKLLEVRTRLYEL  213 (287)
Q Consensus       199 ~~~~~~~~~~~~~~l  213 (287)
                      +.+.+. .+|+++.+
T Consensus       263 d~~~~~-~~d~ii~l  276 (670)
T 3ux8_A          263 DEDTML-AADYLIDI  276 (670)
T ss_dssp             CHHHHH-HCSEEEEE
T ss_pred             CHHHHh-hCCEEEEe
Confidence            998654 47776644

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=99.19  E-value=1.3e-10  Score=96.59  Aligned_cols=114  Identities=15%  Similarity=0.232  Sum_probs=79.3

Q ss_pred             HHHHHHHhcC-C-CCcEEEeCCCCCcHHHHHHHHHHHhC--C----------------C-EEEEeCCCCCCHHHHHHHHH
Q psy2281          24 NHLRNLLKEG-D-FPHLLFYGPSGAGKKTRIMALLKELY--G----------------P-VIILNETDHLTREAQQALRR   82 (287)
Q Consensus        24 ~~l~~~~~~g-~-~~~~~l~Gp~G~GKTtl~~~l~~~~~--~----------------~-~i~ide~d~l~~~~~~~l~~   82 (287)
                      ..+..+++.. . ..+++|+||||||||++++++++...  +                . +++.||.. +..+.+..+++
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G~vn~~~~~f~l~~~~~k~i~l~Ee~~-~~~d~~~~lr~  169 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGK-MTAKVVESAKA  169 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCC-EETTTHHHHHH
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccceeeccccccccccccccEEEEecccc-chhHHHHHHHH
Confidence            3455555432 1 22499999999999999999998631  0                0 55555554 55566677777


Q ss_pred             HHH--------hcc-----CCcEEEEEeCCC-----------CCCcHHHhcccceeecC--------CCCHHHHHHHHHH
Q psy2281          83 TME--------KYI-----TTCRLILCANSM-----------SQVIPAIRSRCLCIRIP--------APTHEEIVSVLTN  130 (287)
Q Consensus        83 ~i~--------~~~-----~~~~~i~~~~~~-----------~~l~~~l~sr~~~~~~~--------~~~~~~~~~~l~~  130 (287)
                      .++        ...     +.+++++++|..           +...++|+|||.+++|.        +++.++....+..
T Consensus       170 i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w  249 (267)
T 1u0j_A          170 ILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRW  249 (267)
T ss_dssp             HHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHH
T ss_pred             HhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHH
Confidence            777        322     556788888872           24668999999999998        7889999999885


Q ss_pred             HHHHhCCCC
Q psy2281         131 ICKKEGLTI  139 (287)
Q Consensus       131 ~~~~~~~~~  139 (287)
                      . +.++.++
T Consensus       250 ~-~~~~~~~  257 (267)
T 1u0j_A          250 A-KDHVVEV  257 (267)
T ss_dssp             H-HHTCCCC
T ss_pred             H-HHcCCCC
Confidence            5 6665544

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.18  E-value=4.9e-11  Score=111.09  Aligned_cols=121  Identities=20%  Similarity=0.224  Sum_probs=87.2

Q ss_pred             CCccCcHHHHHHHHHHHhcCCC-----------CcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281          14 QKLDFHCKQANHLRNLLKEGDF-----------PHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~~~~~g~~-----------~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      ..++|++.++..+...+..|..           .|++|+||||+|||++++++++.....                    
T Consensus       295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~  374 (595)
T 3f9v_A          295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE  374 (595)
T ss_dssp             STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred             chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence            4578888888887766665531           159999999999999999998765310                    


Q ss_pred             -------------------EEEEeCCCCCCHHHHHHHHHHHHhc-------------cCCcEEEEEeCCCC---------
Q psy2281          63 -------------------VIILNETDHLTREAQQALRRTMEKY-------------ITTCRLILCANSMS---------  101 (287)
Q Consensus        63 -------------------~i~ide~d~l~~~~~~~l~~~i~~~-------------~~~~~~i~~~~~~~---------  101 (287)
                                         +++|||++.++.+.+..|+..|+.-             +.++.++.++|...         
T Consensus       375 ~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~  454 (595)
T 3f9v_A          375 KGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPV  454 (595)
T ss_dssp             GGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCS
T ss_pred             cccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCc
Confidence                               8999999999999999999999852             12344666666543         


Q ss_pred             ----CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHH
Q psy2281         102 ----QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKK  134 (287)
Q Consensus       102 ----~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~  134 (287)
                          .+.+++.+|| .++.+..++..+...++..++..
T Consensus       455 ~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~  492 (595)
T 3f9v_A          455 SDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDV  492 (595)
T ss_dssp             CTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTT
T ss_pred             hhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence                7888999999 44445555444455555555543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.13  E-value=2.1e-13  Score=137.49  Aligned_cols=175  Identities=13%  Similarity=0.093  Sum_probs=116.1

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      .+.++..+++|+.  +.|+||+||||||++++|.+...+.  .|.||+.|. ..-..+.+|+.+..++|++.+ +..|..
T Consensus      1095 L~~isl~I~~Ge~--vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di-~~i~~~~lR~~i~~V~Qdp~L-F~gTIr 1170 (1321)
T 4f4c_A         1095 LKGLSFSVEPGQT--LALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI-KTLNPEHTRSQIAIVSQEPTL-FDCSIA 1170 (1321)
T ss_dssp             EEEEEEEECTTCE--EEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEET-TTBCHHHHHTTEEEECSSCCC-CSEEHH
T ss_pred             ccceeEEECCCCE--EEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEh-hhCCHHHHHhheEEECCCCEe-eCccHH
Confidence            3444455578888  9999999999999999999988765  899999874 222356788899999998754 445566


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCC-----C----CHHHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLT-----I----PPEFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~----~~~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +|+..++-       -...+++++.+.++.    .++.     +    +...-+.=.++|+|+.||     |+...++++
T Consensus      1171 eNI~~gld-------~~~~sd~ei~~Al~~----a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A         1171 ENIIYGLD-------PSSVTMAQVEEAARL----ANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp             HHHSSSSC-------TTTSCHHHHHHHHHH----TTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred             HHHhccCC-------CCCCCHHHHHHHHHH----hCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEE
Confidence            66533211       023456666555443    3330     0    000000012367776666     677778899


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++||||+++|..+...+.+.++++.+.   |+++|....+.. +|+++.+
T Consensus      1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~-aD~I~Vl 1288 (1321)
T 4f4c_A         1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN-ADCIAVV 1288 (1321)
T ss_dssp             EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT-CSEEEEE
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh-CCEEEEE
Confidence            999999999988877666666655433   678898877665 4666543

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=99.12  E-value=2e-10  Score=91.38  Aligned_cols=94  Identities=22%  Similarity=0.372  Sum_probs=64.7

Q ss_pred             HHHHHHHHhcCCCC---cEEEeCCCCCcHHHHHHHHHHHhCCC--------------------EEEEeCCCCCCHHH-HH
Q psy2281          23 ANHLRNLLKEGDFP---HLLFYGPSGAGKKTRIMALLKELYGP--------------------VIILNETDHLTREA-QQ   78 (287)
Q Consensus        23 ~~~l~~~~~~g~~~---~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------~i~ide~d~l~~~~-~~   78 (287)
                      ...++.+++.  .|   +++|+||||+||||++.++++.+.+.                    ++++||++.-..+. ..
T Consensus        45 ~~~l~~~~~~--iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s~f~l~~l~~~kIiiLDEad~~~~~~~d~  122 (212)
T 1tue_A           45 LGALKSFLKG--TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDT  122 (212)
T ss_dssp             HHHHHHHHHT--CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHhc--CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccchhhhcccCCCCEEEEECCCchhHHHHHH
Confidence            5566666653  44   49999999999999999999987533                    88999988321111 22


Q ss_pred             HHHHHHHhcc-------------CCcEEEEEeCCC---CCCcHHHhcccceeecCC
Q psy2281          79 ALRRTMEKYI-------------TTCRLILCANSM---SQVIPAIRSRCLCIRIPA  118 (287)
Q Consensus        79 ~l~~~i~~~~-------------~~~~~i~~~~~~---~~l~~~l~sr~~~~~~~~  118 (287)
                      .++..++..+             ..+++++++|..   +.....+.||+..+.|+.
T Consensus       123 ~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F~~  178 (212)
T 1tue_A          123 YMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPN  178 (212)
T ss_dssp             HCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCS
T ss_pred             HHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEcCC
Confidence            3444454421             124788888873   446678999998887764

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.12  E-value=9.9e-11  Score=88.96  Aligned_cols=98  Identities=11%  Similarity=0.086  Sum_probs=66.5

Q ss_pred             CccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHHhC-----------------------CCEEEEeCC
Q psy2281          15 KLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKELY-----------------------GPVIILNET   69 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-----------------------~~~i~ide~   69 (287)
                      +++|+......+...+..  ....+++|+||+|||||+++++++....                       +.++++||+
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~lDei   84 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAEGGVLYVGDI   84 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTTTSEEEEEEC
T ss_pred             CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCCCCeEEEeCh
Confidence            467776666655555432  2223499999999999999999875432                       128999999


Q ss_pred             CCCCHHHHHHHHHHHHhc-cCCcEEEEEeCCC-CC----CcHHHhcccc
Q psy2281          70 DHLTREAQQALRRTMEKY-ITTCRLILCANSM-SQ----VIPAIRSRCL  112 (287)
Q Consensus        70 d~l~~~~~~~l~~~i~~~-~~~~~~i~~~~~~-~~----l~~~l~sr~~  112 (287)
                      +.++.+.|..+.+.++.. ..+.+++.++|.. +.    +.+.+..|+.
T Consensus        85 ~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~  133 (143)
T 3co5_A           85 AQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFS  133 (143)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSS
T ss_pred             HHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhc
Confidence            999999999999888865 3456778777654 22    3344555543

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.11  E-value=1.1e-09  Score=97.67  Aligned_cols=88  Identities=18%  Similarity=0.355  Sum_probs=57.4

Q ss_pred             EEEEeCCCCCCH------------HHHHHHHHHHHhc----------cCCcEEEEEe----CCCCCCcHHHhcccce-ee
Q psy2281          63 VIILNETDHLTR------------EAQQALRRTMEKY----------ITTCRLILCA----NSMSQVIPAIRSRCLC-IR  115 (287)
Q Consensus        63 ~i~ide~d~l~~------------~~~~~l~~~i~~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~~-~~  115 (287)
                      ++++||+|.+..            ..|++|++.++-.          ..+..||.++    +.+..+.+++++|+.+ +.
T Consensus       253 il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~  332 (444)
T 1g41_A          253 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE  332 (444)
T ss_dssp             EEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred             eeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeee
Confidence            466777776542            1466788888741          1222344443    1344577999999976 89


Q ss_pred             cCCCCHHHHHHHHHH-----------HHHHhC--CCCCHHHHHHHHHH
Q psy2281         116 IPAPTHEEIVSVLTN-----------ICKKEG--LTIPPEFALRLAQQ  150 (287)
Q Consensus       116 ~~~~~~~~~~~~l~~-----------~~~~~~--~~~~~~~~~~l~~~  150 (287)
                      |++++.++..+++..           .+...|  +.+++++++.+++.
T Consensus       333 l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~  380 (444)
T 1g41_A          333 LTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEA  380 (444)
T ss_dssp             CCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHH
Confidence            999999999988831           222223  35689999888864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.05  E-value=2.3e-10  Score=87.47  Aligned_cols=97  Identities=21%  Similarity=0.349  Sum_probs=66.4

Q ss_pred             CCCCccC--cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----------------------CCEEEEe
Q psy2281          12 NLQKLDF--HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----------------------GPVIILN   67 (287)
Q Consensus        12 ~~~~~~~--~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------------------~~~i~id   67 (287)
                      ++++++.  +......+..+  .|+.  ++|+||+|+|||||++++++...                      ++++++|
T Consensus        15 ~~~~f~~g~n~~~~~~l~~~--~g~~--~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~lLilD   90 (149)
T 2kjq_A           15 SFDKFLGTENAELVYVLRHK--HGQF--IYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDAAFEAEYLAVD   90 (149)
T ss_dssp             CCCCCCSCCTHHHHHHCCCC--CCSE--EEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGGGGGCSEEEEE
T ss_pred             chhhcCcCccHHHHHHHHhc--CCCE--EEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHHHhCCCEEEEe
Confidence            3444432  44455555544  5555  99999999999999999998762                      1288999


Q ss_pred             CCCCCCHHHHHHHHHHHHhccCC-cE-EEEEeCCCCC-C--cHHHhcccc
Q psy2281          68 ETDHLTREAQQALRRTMEKYITT-CR-LILCANSMSQ-V--IPAIRSRCL  112 (287)
Q Consensus        68 e~d~l~~~~~~~l~~~i~~~~~~-~~-~i~~~~~~~~-l--~~~l~sr~~  112 (287)
                      |++.+....+..+...+...... .. ++++++.... +  .+.++||+.
T Consensus        91 E~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~  140 (149)
T 2kjq_A           91 QVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA  140 (149)
T ss_dssp             STTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred             CccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence            99988766677777777765333 33 6777765432 1  288999984

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.03  E-value=1.9e-12  Score=116.74  Aligned_cols=154  Identities=10%  Similarity=-0.029  Sum_probs=95.4

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---C-CEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEe---
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---G-PVIILNETDHLTREAQQALRRTMEKYITTCRLILCA---   97 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~-~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~---   97 (287)
                      .++..++.|+.  ++|.||||||||||+++|++...   + ..|++|+ +         .++.+.+++++..++...   
T Consensus       130 ~vsl~i~~Ge~--v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~---------~~~~i~~vpq~~~l~~~~~~~  197 (460)
T 2npi_A          130 KIRMSNFEGPR--VVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D---------PQQPIFTVPGCISATPISDIL  197 (460)
T ss_dssp             HHHHHSSSCCC--EEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C---------TTSCSSSCSSCCEEEECCSCC
T ss_pred             cCceEeCCCCE--EEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C---------ccCCeeeeccchhhccccccc
Confidence            45666678988  99999999999999999999864   3 3377886 2         123466777776544332   


Q ss_pred             CCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----H--HHHHHHH----h
Q psy2281          98 NSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----A--ILMCEAS----K  166 (287)
Q Consensus        98 ~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----a--l~~l~~~----~  166 (287)
                      +..+++ .+...      ......   ...+..+++..|+  ++.. . ..++|+|+.||     +  +...+++    +
T Consensus       198 tv~eni-~~~~~------~~~~~~---~~~~~~ll~~~gl--~~~~-~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGL  263 (460)
T 2npi_A          198 DAQLPT-WGQSL------TSGATL---LHNKQPMVKNFGL--ERIN-E-NKDLYLECISQLGQVVGQRLHLDPQVRRSGC  263 (460)
T ss_dssp             CTTCTT-CSCBC------BSSCCS---SCCBCCEECCCCS--SSGG-G-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred             chhhhh-ccccc------ccCcch---HHHHHHHHHHhCC--Cccc-c-hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence            333344 21110      000000   0111222333344  2221 2 67889998888     5  6677889    9


Q ss_pred             hcCC-CcccccCccCccHHHHHHHHHHH-----HHhccChh------HHHHHHHH
Q psy2281         167 VQQY-PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPK------KLLEVRTR  209 (287)
Q Consensus       167 ~~de-p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~------~~~~~~~~  209 (287)
                      ++|| |++++|.. ..    .+.++.+.     ++++|+..      .+..++++
T Consensus       264 lLDEpPts~LD~~-~~----~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr  313 (460)
T 2npi_A          264 IVDTPSISQLDEN-LA----ELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPE  313 (460)
T ss_dssp             EEECCCGGGSCSS-CH----HHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred             EEeCCcccccChh-HH----HHHHHHHHhCCCEEEEEccCchhhhHHHHHHhccc
Confidence            9999 99999987 33    34444433     66788877      66678887

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.02  E-value=3.2e-14  Score=115.33  Aligned_cols=56  Identities=7%  Similarity=-0.068  Sum_probs=38.7

Q ss_pred             HHHHHHHHhhcCCCccccc----CccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         158 AILMCEASKVQQYPFQIDQ----QIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       158 al~~l~~~~~~dep~~~~d----~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++...+.+.++|||+++++    ......+.+.+.++.+.     ++++|+.+.+..++++++.+
T Consensus       137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l  201 (207)
T 1znw_A          137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVG  201 (207)
T ss_dssp             EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC-
T ss_pred             EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHh
Confidence            4444566677788888764    33445556666666532     77999999999999998754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.00  E-value=3.2e-11  Score=116.68  Aligned_cols=155  Identities=16%  Similarity=0.111  Sum_probs=97.4

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC--C
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ--V  103 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~--l  103 (287)
                      ++..+.+|+.  +.|.||||+|||||+++|++   +.+   ++.+. ...    . + +.+.+++..     .....  +
T Consensus       454 vsl~I~~Ge~--v~LiGpNGsGKSTLLk~Lag---G~i---~g~~~-~~~----~-~-~~~v~q~~~-----~~~~~ltv  513 (986)
T 2iw3_A          454 TQLRLKRARR--YGICGPNGCGKSTLMRAIAN---GQV---DGFPT-QEE----C-R-TVYVEHDID-----GTHSDTSV  513 (986)
T ss_dssp             EEEEEETTCE--EEEECSTTSSHHHHHHHHHH---TCS---TTCCC-TTT----S-C-EEETTCCCC-----CCCTTSBH
T ss_pred             ceEEEcCCCE--EEEECCCCCCHHHHHHHHhC---CCc---CCCcc-ccc----e-e-EEEEccccc-----ccccCCcH
Confidence            3334467888  99999999999999999996   211   22211 000    0 0 011111100     00000  1


Q ss_pred             cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         104 IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       104 ~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      ..-+..     .+...     .+.+...++..|+  + +...+.+.++|+|+.||     |+...+.++++|||++++|.
T Consensus       514 ~e~l~~-----~~~~~-----~~~v~~~L~~lgL--~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~  581 (986)
T 2iw3_A          514 LDFVFE-----SGVGT-----KEAIKDKLIEFGF--TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT  581 (986)
T ss_dssp             HHHHHT-----TCSSC-----HHHHHHHHHHTTC--CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred             HHHHHH-----hhcCH-----HHHHHHHHHHcCC--ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence            111110     01111     3456667777787  4 34456678999999888     67777899999999999999


Q ss_pred             ccCccHHHHHHHHHHH--HHhccChhHHHHHHHHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL--IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~--i~~~~~~~~~~~~~~~~~~l  213 (287)
                      .....+.+.+.+ ...  |+++|+...+..++++++.+
T Consensus       582 ~~~~~l~~~L~~-~g~tvIivSHdl~~l~~~adrii~L  618 (986)
T 2iw3_A          582 VNVAWLVNYLNT-CGITSITISHDSVFLDNVCEYIINY  618 (986)
T ss_dssp             HHHHHHHHHHHH-SCSEEEEECSCHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHh-CCCEEEEEECCHHHHHHhCCEEEEE
Confidence            888877777766 211  77999999999998887644

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.98  E-value=1.1e-12  Score=126.74  Aligned_cols=86  Identities=14%  Similarity=0.089  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhCCCCCHH--HHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH-HHhc
Q psy2281         126 SVLTNICKKEGLTIPPE--FALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL-IISE  197 (287)
Q Consensus       126 ~~l~~~~~~~~~~~~~~--~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~-i~~~  197 (287)
                      +.+.+.++..|+  +..  ..+.+.++|||+.||     ++...|.++++|||++++|......+.+.+.++... |+++
T Consensus       878 ~~i~~~Le~lGL--~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiIS  955 (986)
T 2iw3_A          878 KEIEEHCSMLGL--DPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIIT  955 (986)
T ss_dssp             HHHHHHHHHTTC--CHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEEC
T ss_pred             HHHHHHHHHcCC--CchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence            345667777787  543  345678999999998     566668899999999999977655554444433111 7799


Q ss_pred             cChhHHHHHHHHHHHH
Q psy2281         198 QSPKKLLEVRTRLYEL  213 (287)
Q Consensus       198 ~~~~~~~~~~~~~~~l  213 (287)
                      |+.+.+..++++++.+
T Consensus       956 HD~e~v~~l~DrVivL  971 (986)
T 2iw3_A          956 HSAEFTKNLTEEVWAV  971 (986)
T ss_dssp             SCHHHHTTTCCEEECC
T ss_pred             CCHHHHHHhCCEEEEE
Confidence            9999888888877654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.95  E-value=4.5e-08  Score=84.85  Aligned_cols=145  Identities=14%  Similarity=0.133  Sum_probs=103.7

Q ss_pred             CCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh------------------------------
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL------------------------------   59 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~------------------------------   59 (287)
                      |..-+.++|.....+.+...+..|..  ++++||+|+||||+++.+++..                              
T Consensus         8 ~~~~~~~~gR~~el~~L~~~l~~~~~--v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   85 (350)
T 2qen_A            8 KTRREDIFDREEESRKLEESLENYPL--TLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTI   85 (350)
T ss_dssp             CCSGGGSCSCHHHHHHHHHHHHHCSE--EEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHHS
T ss_pred             CCChHhcCChHHHHHHHHHHHhcCCe--EEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHHH
Confidence            33456789999999999988877744  9999999999999998765320                              


Q ss_pred             ------------------------------------------CCCEEEEeCCCCCCH-------HHHHHHHHHHHhccCC
Q psy2281          60 ------------------------------------------YGPVIILNETDHLTR-------EAQQALRRTMEKYITT   90 (287)
Q Consensus        60 ------------------------------------------~~~~i~ide~d~l~~-------~~~~~l~~~i~~~~~~   90 (287)
                                                                .+.+|++||++.+..       .....+...++.. .+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~-~~  164 (350)
T 2qen_A           86 SPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL-PN  164 (350)
T ss_dssp             CSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC-TT
T ss_pred             HHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc-CC
Confidence                                                      011789999998653       3334444444433 35


Q ss_pred             cEEEEEeCCCC---------CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH
Q psy2281          91 CRLILCANSMS---------QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR  157 (287)
Q Consensus        91 ~~~i~~~~~~~---------~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~  157 (287)
                      ..++++++...         ....++..|. ..+.+.+++.++..+.+...+...|..++++....+...++|...-
T Consensus       165 ~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~  241 (350)
T 2qen_A          165 LKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW  241 (350)
T ss_dssp             EEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH
T ss_pred             eEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH
Confidence            66777765421         1112233344 3788999999999999988887778777889999999999998764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=98.95  E-value=1.9e-09  Score=97.67  Aligned_cols=95  Identities=22%  Similarity=0.272  Sum_probs=63.7

Q ss_pred             CccccccCCCCCCCcc-CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---C-C--------------
Q psy2281           2 SLWVDKYRPNNLQKLD-FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---G-P--------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~-~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~-~--------------   62 (287)
                      ++|.+||||.+|+++. .|..++..+...+..+.. +++|.||+||||||++.+++..+.   . .              
T Consensus        12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l   90 (459)
T 3upu_A           12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKIL   90 (459)
T ss_dssp             ---------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHH
T ss_pred             CCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHH
Confidence            4899999999999987 577777777777766552 499999999999999988876541   1 0              


Q ss_pred             ----------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          63 ----------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        63 ----------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                                                              ++++||+..++...+..+.+.+.   ....+++.....
T Consensus        91 ~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~vGD~~  165 (459)
T 3upu_A           91 SKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGIGDNK  165 (459)
T ss_dssp             HHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEEECTT
T ss_pred             HhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEECCHH
Confidence                                                    78999999888776666665543   456677766443

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=98.90  E-value=7e-08  Score=84.71  Aligned_cols=153  Identities=19%  Similarity=0.205  Sum_probs=108.0

Q ss_pred             CccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------------------
Q psy2281          15 KLDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------   62 (287)
                      .++|.......+...+    .....  ++++|++|+||+++++++.......                            
T Consensus       130 ~~ig~s~~~~~~~~~~~~~a~~~~~--vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~  207 (368)
T 3dzd_A          130 EFVGEHPKILEIKRLIPKIAKSKAP--VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAF  207 (368)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHTSCSC--EEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSS
T ss_pred             cccccchHHHHHHhhhhhhhccchh--heEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCcccccc
Confidence            4566554443333333    33333  9999999999999999987654210                            


Q ss_pred             -----------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCC-------CCCcHHH
Q psy2281          63 -----------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSM-------SQVIPAI  107 (287)
Q Consensus        63 -----------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~-------~~l~~~l  107 (287)
                                       ++++||++.++...|..|++.++.-           .-+.++|.+++..       ..+.+.+
T Consensus       208 tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL  287 (368)
T 3dzd_A          208 TGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDL  287 (368)
T ss_dssp             SSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred             CCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHH
Confidence                             7999999999999999999999852           1245677776643       1345567


Q ss_pred             hcccce--eecCCCCH--HHHHHHHHHHHHH----hC---CCCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q psy2281         108 RSRCLC--IRIPAPTH--EEIVSVLTNICKK----EG---LTIPPEFALRLAQQS-DRNLRRAILMCEASKVQQ  169 (287)
Q Consensus       108 ~sr~~~--~~~~~~~~--~~~~~~l~~~~~~----~~---~~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~d  169 (287)
                      ..|+..  +.++++.+  +++...+...+++    .+   ..+++++.+.+..++ .|++|...+.++.++...
T Consensus       288 ~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~  361 (368)
T 3dzd_A          288 YYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILC  361 (368)
T ss_dssp             HHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence            777764  55666655  5666655555443    33   347999999999988 999999999999887764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.88  E-value=2.1e-10  Score=101.75  Aligned_cols=163  Identities=15%  Similarity=0.035  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHhcCC--------------------CCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHH
Q psy2281          20 CKQANHLRNLLKEGD--------------------FPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQ   77 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~--------------------~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~   77 (287)
                      ..+++.++..+++|+                    .  +.|.||||+|||||+++|++...+.  .+.+++.+. +    
T Consensus        36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~--valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~-t----  108 (413)
T 1tq4_A           36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLN--VAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEV-T----  108 (413)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEE--EEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC---------
T ss_pred             HHHhhhccceecCCCCcccchhhhhhhhhcccCCeE--EEEECCCCCcHHHHHHHHhCCCCccCceEEECCeec-c----
Confidence            467788888888888                    6  9999999999999999999976543  333443221 0    


Q ss_pred             HHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC--cH
Q psy2281          78 QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR--NL  155 (287)
Q Consensus        78 ~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G--~~  155 (287)
                          +       . .+++.....+++        .++....+...  ...+.+.++..++.  +. ...+. +|+|  +.
T Consensus       109 ----~-------~-~~v~q~~~~~~l--------tv~D~~g~~~~--~~~~~~~L~~~~L~--~~-~~~~~-lS~G~~~k  162 (413)
T 1tq4_A          109 ----M-------E-RHPYKHPNIPNV--------VFWDLPGIGST--NFPPDTYLEKMKFY--EY-DFFII-ISATRFKK  162 (413)
T ss_dssp             ----C-------C-CEEEECSSCTTE--------EEEECCCGGGS--SCCHHHHHHHTTGG--GC-SEEEE-EESSCCCH
T ss_pred             ----e-------e-EEeccccccCCe--------eehHhhcccch--HHHHHHHHHHcCCC--cc-CCeEE-eCCCCccH
Confidence                0       1 112211111110        01111111000  11234455555542  11 11222 7888  76


Q ss_pred             HH-----HHHH----------HHHHhhcCCCcccccCccCccHHHHHHHHHH----H---------HHhccChhH--HHH
Q psy2281         156 RR-----AILM----------CEASKVQQYPFQIDQQIVEPDWKIYIRDTAK----L---------IISEQSPKK--LLE  205 (287)
Q Consensus       156 r~-----al~~----------l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~----~---------i~~~~~~~~--~~~  205 (287)
                      ++     ++..          .+.++++|||++++|+.....+.+.+.++..    .         ++++|....  +++
T Consensus       163 qrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~  242 (413)
T 1tq4_A          163 NDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPV  242 (413)
T ss_dssp             HHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHH
T ss_pred             HHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHH
Confidence            66     4555          5678899999999999988888888888752    1         236776666  999


Q ss_pred             HHHHHHHHHh
Q psy2281         206 VRTRLYELLV  215 (287)
Q Consensus       206 ~~~~~~~l~~  215 (287)
                      +++.+...+.
T Consensus       243 L~d~I~~~Lp  252 (413)
T 1tq4_A          243 LMDKLISDLP  252 (413)
T ss_dssp             HHHHHHHHSC
T ss_pred             HHHHHHHhCc
Confidence            9998876653

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.85  E-value=6.3e-09  Score=83.43  Aligned_cols=56  Identities=21%  Similarity=0.260  Sum_probs=41.7

Q ss_pred             cccccCCCCCCCccCcH----HHHHHHHHHHhcCC---C-CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281           4 WVDKYRPNNLQKLDFHC----KQANHLRNLLKEGD---F-PHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~----~~~~~l~~~~~~g~---~-~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +..+|++.+|+++++..    .+...+..++....   . .+++|+||+|+||||+++++++..
T Consensus        15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~   78 (202)
T 2w58_A           15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL   78 (202)
T ss_dssp             SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34567889999998743    34556666665431   1 349999999999999999998876

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.80  E-value=3.9e-10  Score=88.28  Aligned_cols=48  Identities=17%  Similarity=0.137  Sum_probs=32.6

Q ss_pred             HHHHHHHHhhcCCCcccccCccC----------------ccHHHHHHHHHHH----HHhccChhHHHH
Q psy2281         158 AILMCEASKVQQYPFQIDQQIVE----------------PDWKIYIRDTAKL----IISEQSPKKLLE  205 (287)
Q Consensus       158 al~~l~~~~~~dep~~~~d~~~~----------------~~~~~~i~~l~~~----i~~~~~~~~~~~  205 (287)
                      ++...+.++++|||++++|+...                ..+.+.+.++.++    ++++|+.+.+..
T Consensus        97 al~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~  164 (171)
T 4gp7_A           97 DYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE  164 (171)
T ss_dssp             HTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred             HcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence            55556778889999999997632                4444555555544    678888877654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.77  E-value=1.4e-10  Score=109.75  Aligned_cols=83  Identities=10%  Similarity=-0.015  Sum_probs=60.5

Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH--H---HHhhcCCCcccccCccCccHHHHHHHHHHH----HHh
Q psy2281         129 TNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC--E---ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IIS  196 (287)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l--~---~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~  196 (287)
                      ...+...++.. ....+.+.++|+|+.||   |....  +   +++++|||++++|+.....+.+.+.++.+.    |++
T Consensus       524 ~~~l~~~~l~~-~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~v  602 (670)
T 3ux8_A          524 LETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI  602 (670)
T ss_dssp             HHHHHHTTCTT-SBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHcCCch-hhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence            34455566631 12245677899999998   22222  3   489999999999999999999999998764    789


Q ss_pred             ccChhHHHHHHHHHHHH
Q psy2281         197 EQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       197 ~~~~~~~~~~~~~~~~l  213 (287)
                      +|+...+. .+|+++.+
T Consensus       603 tHd~~~~~-~~d~i~~l  618 (670)
T 3ux8_A          603 EHNLDVIK-TADYIIDL  618 (670)
T ss_dssp             CCCHHHHT-TCSEEEEE
T ss_pred             eCCHHHHH-hCCEEEEe
Confidence            99998764 57887654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.73  E-value=1.3e-08  Score=87.11  Aligned_cols=55  Identities=24%  Similarity=0.406  Sum_probs=39.8

Q ss_pred             cccCCCCCCCccCcH----HHHHHHHHHHhcC---CCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281           6 DKYRPNNLQKLDFHC----KQANHLRNLLKEG---DFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~----~~~~~l~~~~~~g---~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ..+++.+|+++.+..    .+...+..++...   ...+++|+||+|+|||+++++++..+.
T Consensus       116 ~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          116 KSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             GGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456778999998632    3455566666542   123499999999999999999987654

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=98.69  E-value=5.8e-07  Score=79.42  Aligned_cols=155  Identities=20%  Similarity=0.191  Sum_probs=105.1

Q ss_pred             CCCccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---------------------------
Q psy2281          13 LQKLDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYG---------------------------   61 (287)
Q Consensus        13 ~~~~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---------------------------   61 (287)
                      +..++++......+...+    ....  +++++|++|+||+++++++......                           
T Consensus       136 ~~~~ig~s~~m~~l~~~i~~~a~~~~--~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~  213 (387)
T 1ny5_A          136 EEEYVFESPKMKEILEKIKKISCAEC--PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEK  213 (387)
T ss_dssp             CCCCCCCSHHHHHHHHHHHHHTTCCS--CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCT
T ss_pred             chhhhhccHHhhHHHHHHHHhcCCCC--CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCC
Confidence            345666654444443333    2222  2899999999999999998765320                           


Q ss_pred             -------------------CEEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCC-------CCCc
Q psy2281          62 -------------------PVIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSM-------SQVI  104 (287)
Q Consensus        62 -------------------~~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~-------~~l~  104 (287)
                                         .++++||++.++...|..|++.++.-           ..+.+++.++|..       ..+.
T Consensus       214 g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr  293 (387)
T 1ny5_A          214 GAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFR  293 (387)
T ss_dssp             TSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSC
T ss_pred             CCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCcc
Confidence                               08999999999999999999998852           1245677776653       2244


Q ss_pred             HHHhcccce--eecCCCC--HHHHHHHHHHHHH----HhCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q psy2281         105 PAIRSRCLC--IRIPAPT--HEEIVSVLTNICK----KEGL---TIPPEFALRLAQQS-DRNLRRAILMCEASKVQQ  169 (287)
Q Consensus       105 ~~l~sr~~~--~~~~~~~--~~~~~~~l~~~~~----~~~~---~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~d  169 (287)
                      +.+-.|+..  +.++++.  .+++...+...++    +.+.   .+++++.+.+..++ .|++|..-+.++..++..
T Consensus       294 ~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~  370 (387)
T 1ny5_A          294 EDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS  370 (387)
T ss_dssp             HHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC
Confidence            555556543  4555553  3566655555443    3343   36899999998876 899999999998877654

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.68  E-value=3.5e-08  Score=85.27  Aligned_cols=47  Identities=19%  Similarity=0.403  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD   70 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d   70 (287)
                      +.+.++..++.|+.  +++.||+|+||||+++++++.+.+.  .|.+++.+
T Consensus       160 ~l~~l~~~i~~g~~--v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~  208 (330)
T 2pt7_A          160 AISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE  208 (330)
T ss_dssp             HHHHHHHHHHHTCC--EEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC
T ss_pred             HHhhhhhhccCCCE--EEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee
Confidence            56778888899999  9999999999999999999988765  78888764

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.64  E-value=6.1e-07  Score=77.79  Aligned_cols=141  Identities=17%  Similarity=0.218  Sum_probs=94.7

Q ss_pred             CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC-----------------------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG-----------------------------   61 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~-----------------------------   61 (287)
                      ...+.++|.....+.+.. +..   +.++|+||+|+||||+++.+++....                             
T Consensus        10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l   85 (357)
T 2fna_A           10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEI   85 (357)
T ss_dssp             CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred             CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHH
Confidence            345678899888888888 765   44999999999999999888654211                             


Q ss_pred             ----------------------------------------------------C-EEEEeCCCCCCH----HHHHHHHHHH
Q psy2281          62 ----------------------------------------------------P-VIILNETDHLTR----EAQQALRRTM   84 (287)
Q Consensus        62 ----------------------------------------------------~-~i~ide~d~l~~----~~~~~l~~~i   84 (287)
                                                                          + +++|||++.+..    +....+.+..
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~  165 (357)
T 2fna_A           86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAY  165 (357)
T ss_dssp             HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred             HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHH
Confidence                                                                1 577888776532    1223333333


Q ss_pred             HhccCCcEEEEEeCCCC---------CCcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281          85 EKYITTCRLILCANSMS---------QVIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN  154 (287)
Q Consensus        85 ~~~~~~~~~i~~~~~~~---------~l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~  154 (287)
                      +.. .+..++++++...         ....++..|. ..+.+.+++.++..+.+...+...+...++.  ..+...++|.
T Consensus       166 ~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~t~G~  242 (357)
T 2fna_A          166 DNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEKIGGI  242 (357)
T ss_dssp             HHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHHHCSC
T ss_pred             HcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHHhCCC
Confidence            332 2456677665432         1112234454 5788999999999999988877677765543  7888999998


Q ss_pred             HHHH
Q psy2281         155 LRRA  158 (287)
Q Consensus       155 ~r~a  158 (287)
                      ..-.
T Consensus       243 P~~l  246 (357)
T 2fna_A          243 PGWL  246 (357)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.60  E-value=3.8e-07  Score=96.66  Aligned_cols=109  Identities=17%  Similarity=0.217  Sum_probs=77.8

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------------
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----------------------------------------   62 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------------   62 (287)
                      ..+...+..|..  ++|+||||||||++++.++......                                         
T Consensus      1258 ~ll~~~l~~~~~--vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~g 1335 (2695)
T 4akg_A         1258 KIFYDLLNSKRG--IILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDI 1335 (2695)
T ss_dssp             HHHHHHHHHTCE--EEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSS
T ss_pred             HHHHHHHHCCCe--EEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCC
Confidence            345556667755  9999999999999995544322100                                         


Q ss_pred             ---EEEEeCCCCCCH------HHHHHHHHHHHhc----c--------CCcEEEEEeCCCC-----CCcHHHhcccceeec
Q psy2281          63 ---VIILNETDHLTR------EAQQALRRTMEKY----I--------TTCRLILCANSMS-----QVIPAIRSRCLCIRI  116 (287)
Q Consensus        63 ---~i~ide~d~l~~------~~~~~l~~~i~~~----~--------~~~~~i~~~~~~~-----~l~~~l~sr~~~~~~  116 (287)
                         ++++||++....      ...+.+++.++.-    .        .+..++.++|.+.     .+.+++.+||.++.+
T Consensus      1336 k~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i 1415 (2695)
T 4akg_A         1336 KNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYL 1415 (2695)
T ss_dssp             SCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEEC
T ss_pred             ceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEe
Confidence               888999775322      3456677777741    0        1245666666553     599999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q psy2281         117 PAPTHEEIVSVLTNICKK  134 (287)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~  134 (287)
                      +.|+.+++..++..++..
T Consensus      1416 ~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A         1416 GYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp             CCCTTTHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999998887754

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=98.59  E-value=1.7e-06  Score=77.19  Aligned_cols=96  Identities=15%  Similarity=0.067  Sum_probs=74.2

Q ss_pred             ccCcHHHHHHHHHHHhcCC-----CCcEEEeCCCCCcHHHHHHHH-HHHh----------------C-------------
Q psy2281          16 LDFHCKQANHLRNLLKEGD-----FPHLLFYGPSGAGKKTRIMAL-LKEL----------------Y-------------   60 (287)
Q Consensus        16 ~~~~~~~~~~l~~~~~~g~-----~~~~~l~Gp~G~GKTtl~~~l-~~~~----------------~-------------   60 (287)
                      ++|++.++..+...+-.|.     --|++|.|+||+ ||++++++ ++..                .             
T Consensus       215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~  293 (506)
T 3f8t_A          215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRA  293 (506)
T ss_dssp             STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEE
T ss_pred             cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCC
Confidence            7889888888888776664     114999999999 99999999 4421                0             


Q ss_pred             -------CCEEEEeCCCCCCHHHHHHHHHHHHh---------ccCCcEEEEEeCCCC-----------CCcHHHhcccc
Q psy2281          61 -------GPVIILNETDHLTREAQQALRRTMEK---------YITTCRLILCANSMS-----------QVIPAIRSRCL  112 (287)
Q Consensus        61 -------~~~i~ide~d~l~~~~~~~l~~~i~~---------~~~~~~~i~~~~~~~-----------~l~~~l~sr~~  112 (287)
                             +.++++||++.++...|.+|++.|+.         .+..+.++-++|-.+           ++.+++.+||.
T Consensus       294 G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFD  372 (506)
T 3f8t_A          294 GAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFD  372 (506)
T ss_dssp             CHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCS
T ss_pred             CeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhhee
Confidence                   12999999999999999999999995         334455666655433           68889999994

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.54  E-value=4.7e-10  Score=107.45  Aligned_cols=85  Identities=11%  Similarity=0.030  Sum_probs=64.6

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH-----HHHhhcCCCcccccCccCccHHHHHHHHHHH----H
Q psy2281         127 VLTNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC-----EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----I  194 (287)
Q Consensus       127 ~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l-----~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i  194 (287)
                      .+.+.++..|+... ...+.+..+|+|+.||   |..+.     +.++++||||+++|......+.+.+.++.+.    |
T Consensus       709 ~~~~~L~~~gL~~~-~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI  787 (842)
T 2vf7_A          709 RALDTLREVGLGYL-RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI  787 (842)
T ss_dssp             HHHHHHHHTTCTTS-BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHcCCCcc-cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            45667777887421 2345678899999999   22222     3688999999999999988898899888765    7


Q ss_pred             HhccChhHHHHHHHHHHHH
Q psy2281         195 ISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++|+.+.+ ..+|+++.+
T Consensus       788 visHdl~~i-~~aDrii~L  805 (842)
T 2vf7_A          788 AVEHKMQVV-AASDWVLDI  805 (842)
T ss_dssp             EECCCHHHH-TTCSEEEEE
T ss_pred             EEcCCHHHH-HhCCEEEEE
Confidence            799999888 678887765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.44  E-value=3.7e-08  Score=94.92  Aligned_cols=83  Identities=10%  Similarity=-0.001  Sum_probs=62.2

Q ss_pred             HHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH-----HHHhhcCCCcccccCccCccHHHHHHHHHHH----HHh
Q psy2281         129 TNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC-----EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IIS  196 (287)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l-----~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~  196 (287)
                      ...++..|+.. ....+.+..+|+|+.||   |..+.     +.++++||||+++|......+.+.+.++.+.    |++
T Consensus       826 ~~~L~~~gL~~-~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvi  904 (972)
T 2r6f_A          826 LETLYDVGLGY-MKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVI  904 (972)
T ss_dssp             HHHHHHTTCSS-SBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHcCCCc-ccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            45677777731 12345678899999998   33232     2688999999999999988888899888765    779


Q ss_pred             ccChhHHHHHHHHHHHH
Q psy2281         197 EQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       197 ~~~~~~~~~~~~~~~~l  213 (287)
                      +|+.+.+ ..+|+++.+
T Consensus       905 sHdl~~i-~~aDrIivL  920 (972)
T 2r6f_A          905 EHNLDVI-KTADYIIDL  920 (972)
T ss_dssp             CCCHHHH-TTCSEEEEE
T ss_pred             cCCHHHH-HhCCEEEEE
Confidence            9999876 467877655

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.43  E-value=8.3e-10  Score=101.59  Aligned_cols=160  Identities=10%  Similarity=0.036  Sum_probs=90.1

Q ss_pred             CCccCcHHHHHHHHH-HHhcCCCCcEEEeCCCCCcHHHHHHH--HHHHhCC--CEEEEeCCCCCCHHHHHHHHHHHHhcc
Q psy2281          14 QKLDFHCKQANHLRN-LLKEGDFPHLLFYGPSGAGKKTRIMA--LLKELYG--PVIILNETDHLTREAQQALRRTMEKYI   88 (287)
Q Consensus        14 ~~~~~~~~~~~~l~~-~~~~g~~~~~~l~Gp~G~GKTtl~~~--l~~~~~~--~~i~ide~d~l~~~~~~~l~~~i~~~~   88 (287)
                      ..+.+...+++.+.. -+.+|++  ++|.||||||||||+++  +++...+  ..+++++.+  .........+.+++.+
T Consensus        19 ~~~~~g~~~Ld~i~~G~i~~Ge~--~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~--~~~~~~~~~~~~g~~~   94 (525)
T 1tf7_A           19 AKMRTMIEGFDDISHGGLPIGRS--TLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE--TPQDIIKNARSFGWDL   94 (525)
T ss_dssp             CEECCCCTTHHHHTTSSEETTSE--EEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHHGGGTCCH
T ss_pred             ccccCCchhHHHhcCCCCCCCeE--EEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC--CHHHHHHHHHHcCCCh
Confidence            334434445666666 6678888  99999999999999999  5677652  278888766  2222222233344444


Q ss_pred             CCcE----EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHH
Q psy2281          89 TTCR----LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEA  164 (287)
Q Consensus        89 ~~~~----~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~  164 (287)
                      |+..    ++.. +..+.      .+.    ..             +++..++  ++...+.+..+|+|+        ++
T Consensus        95 q~~~~~~~l~~~-~~~~~------~~~----~~-------------~l~~~~l--~~~~~~~~~~LS~g~--------~~  140 (525)
T 1tf7_A           95 AKLVDEGKLFIL-DASPD------PEG----QE-------------VVGGFDL--SALIERINYAIQKYR--------AR  140 (525)
T ss_dssp             HHHHHTTSEEEE-ECCCC------SSC----CS-------------CCSSHHH--HHHHHHHHHHHHHHT--------CS
T ss_pred             HHhhccCcEEEE-ecCcc------cch----hh-------------hhcccCH--HHHHHHHHHHHHHcC--------CC
Confidence            3321    2221 11110      000    00             0011111  222334445566654        45


Q ss_pred             HhhcCCCcccc-----cCccCccHHHHHHHHHHH----HHhccChhHH---------HHHHHHHH
Q psy2281         165 SKVQQYPFQID-----QQIVEPDWKIYIRDTAKL----IISEQSPKKL---------LEVRTRLY  211 (287)
Q Consensus       165 ~~~~dep~~~~-----d~~~~~~~~~~i~~l~~~----i~~~~~~~~~---------~~~~~~~~  211 (287)
                      .+++|+|++..     |+.....+.+.+..+.+.    ++++|+...+         ..++|+++
T Consensus       141 ~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi  205 (525)
T 1tf7_A          141 RVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVV  205 (525)
T ss_dssp             EEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEE
T ss_pred             EEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEE
Confidence            67889997754     445555666777777655    7788998773         45567655

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.43  E-value=1.7e-08  Score=97.62  Aligned_cols=84  Identities=11%  Similarity=0.022  Sum_probs=60.6

Q ss_pred             HHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH-----HHHhhcCCCcccccCccCccHHHHHHHHHHH----HH
Q psy2281         128 LTNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC-----EASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----II  195 (287)
Q Consensus       128 l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l-----~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~  195 (287)
                      ....++..|+.. ....+...++|||+.||   |-.+.     +.++++||||+++|......+.+.+.++.+.    |+
T Consensus       785 ~~~~L~~vGL~~-~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIv  863 (916)
T 3pih_A          785 TLQVLHDVGLGY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIV  863 (916)
T ss_dssp             HHHHHHHTTGGG-SBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHcCCch-hhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence            345566666621 01224456799999999   22221     2588999999999999999999999998765    78


Q ss_pred             hccChhHHHHHHHHHHHH
Q psy2281         196 SEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.+.+.. +|+++.|
T Consensus       864 I~HdL~~i~~-ADrIivL  880 (916)
T 3pih_A          864 IEHNLDVIKN-ADHIIDL  880 (916)
T ss_dssp             ECCCHHHHTT-CSEEEEE
T ss_pred             EeCCHHHHHh-CCEEEEe
Confidence            9999987765 7887755

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.42  E-value=3.9e-08  Score=75.73  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=33.7

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNE   68 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide   68 (287)
                      +...++..+.+|++  ++|.||||+|||||++++++.+ +.  .|.+++
T Consensus        22 ~l~~vsl~i~~Ge~--v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g   67 (158)
T 1htw_A           22 AEILLKLHTEKAIM--VYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPT   67 (158)
T ss_dssp             HHHHHHHCCSSCEE--EEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCT
T ss_pred             HHhccccccCCCCE--EEEECCCCCCHHHHHHHHHHhC-CCCCeEEECC
Confidence            34445555578888  9999999999999999999998 54  344444

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.37  E-value=2.9e-09  Score=89.44  Aligned_cols=122  Identities=11%  Similarity=-0.028  Sum_probs=56.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceee
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIR  115 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~  115 (287)
                      +++.||||+|||||+++|++...+.  .+.+++.+. ...   ..++.+..++++..+....+..+++..+...      
T Consensus         5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i-~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~------   74 (270)
T 3sop_A            5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKI-PKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQI------   74 (270)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHC------------C-CCC---CSCCEEEESCC----CCEEEEECCCC--CCS------
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCCCccccCCccc-Ccc---eeeeeeEEEeecCCCcCCceEEechhhhhhc------
Confidence            7899999999999999999988754  455554332 100   0112233344443333333333433222110      


Q ss_pred             cCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHH-H-HHHHHHhhcCCCcccccCcc
Q psy2281         116 IPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRA-I-LMCEASKVQQYPFQIDQQIV  179 (287)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~a-l-~~l~~~~~~dep~~~~d~~~  179 (287)
                      ......+.+...+.          .........++|+|+.|+. + ..+..+++.|+|+.++++..
T Consensus        75 ~~~~~~~~i~~~~~----------~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD  130 (270)
T 3sop_A           75 NNENCWEPIEKYIN----------EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD  130 (270)
T ss_dssp             BCTTCSHHHHHHHH----------HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH
T ss_pred             ccHHHHHHHHHHHH----------HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH
Confidence            00111122222222          1223344567899987761 0 01123677899988887554

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.36  E-value=7e-08  Score=86.08  Aligned_cols=63  Identities=11%  Similarity=-0.012  Sum_probs=48.0

Q ss_pred             HcCCcHHH-----HHHHHH--HHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHH
Q psy2281         150 QSDRNLRR-----AILMCE--ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       150 ~s~G~~r~-----al~~l~--~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +|+|+.++     ++...+  .++++|||++++|......+.+.+.++.+.   ++++|+...+ ..+|+++.+
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~~l  368 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHYKV  368 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEEEE
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEEEE
Confidence            59998888     344445  788899999999999888888888887522   6799998554 557776644

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.33  E-value=1.6e-08  Score=86.29  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~   75 (287)
                      ++|.||||+||||+++.|++.+.+.  -|.+++.|.....
T Consensus       103 i~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~  142 (302)
T 3b9q_A          103 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA  142 (302)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchh
Confidence            8899999999999999999987533  5677777765543

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.29  E-value=4.4e-07  Score=73.91  Aligned_cols=36  Identities=22%  Similarity=0.456  Sum_probs=28.2

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CCEEEEe
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELY---GPVIILN   67 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~id   67 (287)
                      +..|+.  ++|+||||+||||+++.+++...   +.+++++
T Consensus        20 i~~G~~--~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~   58 (235)
T 2w0m_A           20 IPQGFF--IALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT   58 (235)
T ss_dssp             EETTCE--EEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CcCCCE--EEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            345666  99999999999999999997653   3366665

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.28  E-value=5.9e-09  Score=89.96  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=44.8

Q ss_pred             HHHHcCCcHHH---HHHH------HHHHhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHH
Q psy2281         147 LAQQSDRNLRR---AILM------CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRL  210 (287)
Q Consensus       147 l~~~s~G~~r~---al~~------l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~  210 (287)
                      +..+|+|+.|+   |...      .+.++++|||++++|+.....+.+.+.++.+.   ++++|+.. +...+|++
T Consensus       217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~  291 (322)
T 1e69_A          217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL  291 (322)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred             hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence            45789998888   2222      14688899999999988888888777776432   67888854 44455643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.26  E-value=3.7e-08  Score=85.79  Aligned_cols=38  Identities=21%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~   75 (287)
                      ++|+||||+||||+++.|++.+.+.  -|.+++.|.....
T Consensus       160 i~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~  199 (359)
T 2og2_A          160 IMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA  199 (359)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH
T ss_pred             EEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccc
Confidence            8899999999999999999987533  6777777765543

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.25  E-value=4.2e-06  Score=67.88  Aligned_cols=30  Identities=40%  Similarity=0.552  Sum_probs=25.6

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ..+|++  ++|.||||+|||||+++|++...+
T Consensus        13 ~~~G~i--i~l~GpsGsGKSTLlk~L~g~~~p   42 (219)
T 1s96_A           13 MAQGTL--YIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             --CCCE--EEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CCCCcE--EEEECCCCCCHHHHHHHHhccCCC
Confidence            367777  999999999999999999998764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.20  E-value=6.3e-07  Score=72.15  Aligned_cols=42  Identities=24%  Similarity=0.377  Sum_probs=32.1

Q ss_pred             ccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281           7 KYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus         7 k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ..+|+++.    +..+   ++. +.+|++  +.|.||||||||||++++++.
T Consensus         4 ~i~pk~~g----~~~~---l~~-i~~Ge~--~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A            4 VIRPKTLG----QKHY---VDA-IDTNTI--VFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             CCCCCSHH----HHHH---HHH-HHHCSE--EEEECCTTSSTTHHHHHHHHH
T ss_pred             ccccCCHh----HHHH---HHh-ccCCCE--EEEECCCCCCHHHHHHHHhcC
Confidence            45676653    2333   333 378998  999999999999999999997

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=98.18  E-value=3.6e-05  Score=81.96  Aligned_cols=104  Identities=16%  Similarity=0.248  Sum_probs=76.4

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------EEEEeCCCCCCHHH
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------------------VIILNETDHLTREA   76 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------~i~ide~d~l~~~~   76 (287)
                      ..+...+..+..  .++.||+|+|||++++.+++.++..                           .+++||++.+..+.
T Consensus       636 ~tl~~Al~~~~~--~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~ev  713 (2695)
T 4akg_A          636 ATLTDSLHQKYG--GCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKV  713 (2695)
T ss_dssp             HHHHHHHHTTCE--EEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHH
T ss_pred             HHHHHHHHhCCC--CcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHH
Confidence            344445555555  8899999999999999999988644                           78999999999887


Q ss_pred             HHHHHHHHHh--------------------ccCCcEEEEEeC----CCCCCcHHHhcccceeecCCCCHHHHHHHHH
Q psy2281          77 QQALRRTMEK--------------------YITTCRLILCAN----SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLT  129 (287)
Q Consensus        77 ~~~l~~~i~~--------------------~~~~~~~i~~~~----~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~  129 (287)
                      ...+...+..                    ..+++.++.+.|    ....+.+.+++||..+.+..|+.+.+.+++.
T Consensus       714 Ls~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l  790 (2695)
T 4akg_A          714 LSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMIL  790 (2695)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHH
Confidence            6665332221                    123455666666    3356899999999999998898877766643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.13  E-value=1.3e-06  Score=70.78  Aligned_cols=38  Identities=34%  Similarity=0.368  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ..++.++..+.+|++  ++|+|||||||||++++|++...
T Consensus        11 ~~l~~isl~i~~G~~--~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYP--LVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             -----------CCCC--EEEECSTTSSHHHHHHHHHHHST
T ss_pred             ccccCCceecCCCCE--EEEECCCCCCHHHHHHHHHhhCC
Confidence            345677777889999  99999999999999999999874

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=98.08  E-value=5.3e-07  Score=76.01  Aligned_cols=28  Identities=25%  Similarity=0.433  Sum_probs=24.5

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +..|++  ++|+||||+|||||++.++..+
T Consensus        27 l~~G~i--~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           27 MVAGTV--GALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             EETTSE--EEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCCE--EEEEcCCCCCHHHHHHHHHHHH
Confidence            456777  9999999999999999998755

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.07  E-value=5e-06  Score=72.68  Aligned_cols=45  Identities=24%  Similarity=0.417  Sum_probs=39.2

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD   70 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d   70 (287)
                      +.++..+++|+.  ++|.||+|+||||+++++++...+.  .|.+++..
T Consensus       166 ~~l~~~i~~G~~--i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~  212 (361)
T 2gza_A          166 SFLRRAVQLERV--IVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVP  212 (361)
T ss_dssp             HHHHHHHHTTCC--EEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSS
T ss_pred             HHHHHHHhcCCE--EEEECCCCCCHHHHHHHHHhcCCCCceEEEECCcc
Confidence            777888899999  9999999999999999999987655  78888653

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.05  E-value=1.4e-06  Score=68.89  Aligned_cols=36  Identities=31%  Similarity=0.368  Sum_probs=29.1

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      .+|+.  ++|.|||||||||++++|++......+++|+
T Consensus         7 ~~g~~--i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~   42 (191)
T 1zp6_A            7 LGGNI--LLLSGHPGSGKSTIAEALANLPGVPKVHFHS   42 (191)
T ss_dssp             CTTEE--EEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred             CCCeE--EEEECCCCCCHHHHHHHHHhccCCCeEEEcc
Confidence            45666  9999999999999999999975434677764

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.03  E-value=6.1e-06  Score=65.03  Aligned_cols=60  Identities=10%  Similarity=0.271  Sum_probs=40.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC------------------------------------------------CCEEEEeCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY------------------------------------------------GPVIILNET   69 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~------------------------------------------------~~~i~ide~   69 (287)
                      ++++||+|+||||++..++....                                                .++|+|||+
T Consensus         6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvviIDE~   85 (184)
T 2orw_A            6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEV   85 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCTTEEEEEECCG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcCCCCEEEEECc
Confidence            88999999999999854443210                                                017999999


Q ss_pred             CCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          70 DHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        70 d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      +.++++....+....+.   +..+++++...
T Consensus        86 Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~  113 (184)
T 2orw_A           86 QFFNPSLFEVVKDLLDR---GIDVFCAGLDL  113 (184)
T ss_dssp             GGSCTTHHHHHHHHHHT---TCEEEEEEESB
T ss_pred             ccCCHHHHHHHHHHHHC---CCCEEEEeecc
Confidence            98876655555555443   45566655543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.02  E-value=3.9e-07  Score=78.48  Aligned_cols=36  Identities=28%  Similarity=0.500  Sum_probs=28.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT   73 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~   73 (287)
                      ++|.||||+||||+++.|++.+.+.  -|.+++.|...
T Consensus       132 i~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r  169 (328)
T 3e70_C          132 IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFR  169 (328)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccc
Confidence            8999999999999999999987543  45556656443

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.02  E-value=3.2e-06  Score=71.84  Aligned_cols=40  Identities=25%  Similarity=0.320  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCE
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPV   63 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~   63 (287)
                      +++.++..+++|++  ++|+||||+|||||+++|++.+.+.+
T Consensus       115 vL~~vsl~i~~Ge~--vaIvGpsGsGKSTLl~lL~gl~~G~I  154 (305)
T 2v9p_A          115 ALKLWLKGIPKKNC--LAFIGPPNTGKSMLCNSLIHFLGGSV  154 (305)
T ss_dssp             HHHHHHHTCTTCSE--EEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred             hhccceEEecCCCE--EEEECCCCCcHHHHHHHHhhhcCceE
Confidence            45556666688988  99999999999999999999985533

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.01  E-value=5.2e-06  Score=67.42  Aligned_cols=44  Identities=20%  Similarity=0.313  Sum_probs=34.0

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------EEEEeCCCCCCHH
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------VIILNETDHLTRE   75 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------~i~ide~d~l~~~   75 (287)
                      +..|++  ++|.|||||||||+++++++....+         +++++..+.....
T Consensus        22 i~~G~~--~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~   74 (231)
T 4a74_A           22 IETQAI--TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE   74 (231)
T ss_dssp             EESSEE--EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred             CCCCcE--EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence            456666  9999999999999999999965431         7888876644443

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.00  E-value=1.8e-05  Score=68.88  Aligned_cols=46  Identities=24%  Similarity=0.336  Sum_probs=32.6

Q ss_pred             CCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.+++++.... ....+  ...+|+.  +++.||+||||||+++++++.+.
T Consensus       103 ~~~l~~lg~~~-~l~~l--~~~~~g~--i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          103 VLTMEELGMGE-VFKRV--SDVPRGL--VLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CCCTTTTTCCH-HHHHH--HHCSSEE--EEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCHHHcCChH-HHHHH--HhCCCCE--EEEECCCCCCHHHHHHHHHhccc
Confidence            34566665443 33333  3345556  99999999999999999999874

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.00  E-value=2.3e-06  Score=70.64  Aligned_cols=41  Identities=15%  Similarity=-0.037  Sum_probs=25.8

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      |...+++.++..+.+|.+  +.|.||+||||||++++|++.+.
T Consensus        10 ~~~~~l~~isl~i~~g~i--igI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRPFL--IGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             -------------CCSEE--EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCceeecceeccCCCCEE--EEEECCCCCCHHHHHHHHHHHhc
Confidence            344566777777788888  99999999999999999999774

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.00  E-value=7.4e-06  Score=74.74  Aligned_cols=50  Identities=16%  Similarity=0.155  Sum_probs=42.5

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD   70 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d   70 (287)
                      ...+...++..++.|..  +++.||+||||||+++++++.+.+.  ++.+++..
T Consensus       246 ~~~~l~~l~~~v~~g~~--i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~  297 (511)
T 2oap_1          246 PSGVLAYLWLAIEHKFS--AIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR  297 (511)
T ss_dssp             CHHHHHHHHHHHHTTCC--EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred             CHHHHHHHHHHHhCCCE--EEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence            45667888888899988  9999999999999999999988765  77777654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.98  E-value=2.9e-06  Score=70.78  Aligned_cols=55  Identities=25%  Similarity=0.378  Sum_probs=38.3

Q ss_pred             CCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeCC
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYG---PVIILNET   69 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide~   69 (287)
                      +-+++++... .+++.+.  +.+|+.  ++|+|||||||||+++++++.+.+   ..|+++|.
T Consensus         5 ~~~l~~l~~~-~vl~~i~--i~~g~~--v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~   62 (261)
T 2eyu_A            5 IPEFKKLGLP-DKVLELC--HRKMGL--ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED   62 (261)
T ss_dssp             -CCGGGSSCC-THHHHGG--GCSSEE--EEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CCChHHCCCH-HHHHHHh--hCCCCE--EEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence            3455555443 3555555  677777  999999999999999999998743   24555553

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.98  E-value=1.1e-05  Score=71.62  Aligned_cols=55  Identities=27%  Similarity=0.556  Sum_probs=40.0

Q ss_pred             CCCCCccCcHHHHHHHHHHH-hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---EEEEe
Q psy2281          11 NNLQKLDFHCKQANHLRNLL-KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---VIILN   67 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~-~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~id   67 (287)
                      -.++++...+.....++..+ .+|+.  ++++||+||||||+++++++.+.+.   +++++
T Consensus       144 ~~l~~Lg~~~~~~~~L~~l~~~~ggi--i~I~GpnGSGKTTlL~allg~l~~~~g~I~~~e  202 (418)
T 1p9r_A          144 LDLHSLGMTAHNHDNFRRLIKRPHGI--ILVTGPTGSGKSTTLYAGLQELNSSERNILTVE  202 (418)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHTSSSEE--EEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             CCHHHcCCCHHHHHHHHHHHHhcCCe--EEEECCCCCCHHHHHHHHHhhcCCCCCEEEEec
Confidence            35666665665555666654 34555  8999999999999999999998754   55544

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.97  E-value=3e-07  Score=89.02  Aligned_cols=48  Identities=4%  Similarity=-0.116  Sum_probs=34.1

Q ss_pred             HHHHhhcCCCcccccCccCccHH-HHHHHHHHH-----HHhccChhHHHHHHHHH
Q psy2281         162 CEASKVQQYPFQIDQQIVEPDWK-IYIRDTAKL-----IISEQSPKKLLEVRTRL  210 (287)
Q Consensus       162 l~~~~~~dep~~~~d~~~~~~~~-~~i~~l~~~-----i~~~~~~~~~~~~~~~~  210 (287)
                      .+.++++|||++++|+.....+. .++..+.+.     ++++|+.+.. .++++.
T Consensus       752 ~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~~  805 (918)
T 3thx_B          752 SQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKNY  805 (918)
T ss_dssp             TTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhhc
Confidence            36789999999999987666654 566666552     7799997544 445543

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.96  E-value=3.7e-06  Score=67.10  Aligned_cols=27  Identities=37%  Similarity=0.690  Sum_probs=24.2

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+|++  ++|.|||||||||++++|++..
T Consensus         5 ~~g~i--i~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            5 NKANL--FIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCCE--EEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCcE--EEEECcCCCCHHHHHHHHHhhC
Confidence            45677  9999999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.95  E-value=4.7e-06  Score=65.32  Aligned_cols=63  Identities=5%  Similarity=-0.112  Sum_probs=38.8

Q ss_pred             HHHHcCCcHHH-----H-----HHHHHHHhhcCC--CcccccCccCccHHHHHHHHHH-HHHhc---cChhHHHHHHHH
Q psy2281         147 LAQQSDRNLRR-----A-----ILMCEASKVQQY--PFQIDQQIVEPDWKIYIRDTAK-LIISE---QSPKKLLEVRTR  209 (287)
Q Consensus       147 l~~~s~G~~r~-----a-----l~~l~~~~~~de--p~~~~d~~~~~~~~~~i~~l~~-~i~~~---~~~~~~~~~~~~  209 (287)
                      ...+|+|+.++     +     +...+.++++||  |++.+|+.....+.+.+.+... -++.+   |+...+..++++
T Consensus        74 ~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r  152 (178)
T 1ye8_A           74 GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL  152 (178)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred             ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence            44578887666     2     344567889999  9999996655444444433111 14455   466777766664

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.93  E-value=6.6e-05  Score=80.70  Aligned_cols=109  Identities=17%  Similarity=0.287  Sum_probs=76.3

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----------------------------------CC-------
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----------------------------------GP-------   62 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----------------------------------~~-------   62 (287)
                      ..+..++..|..  ++|+||+|||||.++......+.                                  +.       
T Consensus      1295 ~ll~~ll~~~~p--vLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~ 1372 (3245)
T 3vkg_A         1295 DVLHAWLSEHRP--LILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQL 1372 (3245)
T ss_dssp             HHHHHHHHTTCC--CEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESST
T ss_pred             HHHHHHHHCCCc--EEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcC
Confidence            455666677766  99999999999988755332211                                  10       


Q ss_pred             ----EEEEeCCCCCCH------HHHHHHHHHHHhc------------cCCcEEEEEeCCC-----CCCcHHHhcccceee
Q psy2281          63 ----VIILNETDHLTR------EAQQALRRTMEKY------------ITTCRLILCANSM-----SQVIPAIRSRCLCIR  115 (287)
Q Consensus        63 ----~i~ide~d~l~~------~~~~~l~~~i~~~------------~~~~~~i~~~~~~-----~~l~~~l~sr~~~~~  115 (287)
                          ++++||++.-..      ...+.|++.+++-            -.+..++.+++.+     ..+.+.+.+||.++.
T Consensus      1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~ 1452 (3245)
T 3vkg_A         1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILL 1452 (3245)
T ss_dssp             TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEE
T ss_pred             CceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEE
Confidence                788999875432      2456677777741            1234566666654     348899999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHH
Q psy2281         116 IPAPTHEEIVSVLTNICKK  134 (287)
Q Consensus       116 ~~~~~~~~~~~~l~~~~~~  134 (287)
                      +..|+.+++..+...++..
T Consensus      1453 i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A         1453 VDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp             CCCCCHHHHHHHHHHHHHH
T ss_pred             eCCCCHHHHHHHHHHHHHH
Confidence            9999999998887766543

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.93  E-value=5.9e-06  Score=65.89  Aligned_cols=27  Identities=37%  Similarity=0.508  Sum_probs=22.9

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +|+.  ++|+||||+||||++++|++...
T Consensus         3 ~g~~--i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRP--VVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CC--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCE--EEEECCCCCCHHHHHHHHHhhCc
Confidence            4566  99999999999999999999764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.91  E-value=7.7e-06  Score=65.21  Aligned_cols=34  Identities=21%  Similarity=0.235  Sum_probs=28.0

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNET   69 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~   69 (287)
                      +|++  ++|.|||||||||++++|++.+.  .+++|+-
T Consensus        28 ~g~~--i~l~G~~GsGKSTl~~~L~~~~g--~~~i~~d   61 (200)
T 4eun_A           28 PTRH--VVVMGVSGSGKTTIAHGVADETG--LEFAEAD   61 (200)
T ss_dssp             CCCE--EEEECCTTSCHHHHHHHHHHHHC--CEEEEGG
T ss_pred             CCcE--EEEECCCCCCHHHHHHHHHHhhC--CeEEccc
Confidence            4555  99999999999999999999884  4666653

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.91  E-value=5.4e-06  Score=66.05  Aligned_cols=45  Identities=27%  Similarity=0.186  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      ..+.++..+.++..  ++|.||+||||||+++.|++.+....+-.|+
T Consensus        14 ~~~~~~~~~~~~~~--i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~   58 (199)
T 3vaa_A           14 GTENLYFQSNAMVR--IFLTGYMGAGKTTLGKAFARKLNVPFIDLDW   58 (199)
T ss_dssp             ----------CCCE--EEEECCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred             CCCceeEecCCCCE--EEEEcCCCCCHHHHHHHHHHHcCCCEEcchH
Confidence            34556666667776  9999999999999999999998765444443

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.88  E-value=6.8e-06  Score=64.43  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      |+.  ++|.|||||||||++++|++...
T Consensus         5 g~~--i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKT--LVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCE--EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCE--EEEECCCCCCHHHHHHHHHhhCC
Confidence            445  89999999999999999999764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.85  E-value=7.7e-06  Score=65.22  Aligned_cols=42  Identities=38%  Similarity=0.472  Sum_probs=31.0

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--CC-EEEEeC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--GP-VIILNE   68 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~~-~i~ide   68 (287)
                      .......+|..  ++|.|||||||||++++|++.+.  +. .+++|+
T Consensus        17 ~~~~~~~~g~~--i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~   61 (200)
T 3uie_A           17 RQRLLDQKGCV--IWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG   61 (200)
T ss_dssp             HHHHHTSCCEE--EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             HHHhcCCCCeE--EEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence            33333455666  99999999999999999999874  22 347774

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.85  E-value=1.1e-05  Score=69.96  Aligned_cols=47  Identities=19%  Similarity=0.186  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET   69 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~   69 (287)
                      ..+++.+ ..+.+|+.  +.|.||||+|||||+++|++...++  ++.+.+.
T Consensus        59 ~~ald~l-l~i~~Gq~--~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~  107 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQR--IGIFAGSGVGKSTLLGMICNGASADIIVLALIGE  107 (347)
T ss_dssp             CHHHHHH-SCEETTCE--EEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             CEEEEee-eeecCCCE--EEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence            3456666 55688988  9999999999999999999998877  4555553

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.84  E-value=0.0001  Score=59.05  Aligned_cols=25  Identities=48%  Similarity=0.571  Sum_probs=22.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.|||||||+|.++.|+..+...
T Consensus         3 Iil~GpPGsGKgTqa~~La~~~g~~   27 (206)
T 3sr0_A            3 LVFLGPPGAGKGTQAKRLAKEKGFV   27 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCe
Confidence            6899999999999999999887543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.83  E-value=1.2e-05  Score=62.21  Aligned_cols=28  Identities=32%  Similarity=0.438  Sum_probs=24.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|+|||||||||++++|++.+..  .++|
T Consensus         7 i~l~G~~GsGKSTl~~~La~~l~~--~~id   34 (173)
T 1kag_A            7 IFLVGPMGAGKSTIGRQLAQQLNM--EFYD   34 (173)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHTTC--EEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC--CEEe
Confidence            999999999999999999998774  4555

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.83  E-value=6e-06  Score=66.32  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=27.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC---C--EEEEeCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG---P--VIILNETD   70 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~--~i~ide~d   70 (287)
                      +.|.||||||||||+++|++.+.+   .  .|.+|+.+
T Consensus        25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~   62 (208)
T 3c8u_A           25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH   62 (208)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence            899999999999999999998862   2  56666644

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.81  E-value=0.00014  Score=67.54  Aligned_cols=47  Identities=19%  Similarity=0.231  Sum_probs=38.2

Q ss_pred             CCCCCCccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~   56 (287)
                      |.....++|.......+...+..  +..+.+.|+||.|+|||||+..++
T Consensus       120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~  168 (591)
T 1z6t_A          120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAV  168 (591)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHH
Confidence            66677899999999999888853  222238999999999999998886

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.81  E-value=1.4e-05  Score=71.45  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCC
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNET   69 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~   69 (287)
                      ..+++.+ ..+.+|+.  +.|.||||||||||+++|++...++  .+.+++.
T Consensus       145 ~~vld~v-l~i~~Gq~--~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~  193 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQR--MGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGE  193 (438)
T ss_dssp             CHHHHHH-SCCBTTCE--EEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred             ceEEeee-EEecCCCE--EEEECCCCCCHHHHHHHHhcccCCCeEEEEEece
Confidence            3466666 66688888  9999999999999999999998776  6666664

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.81  E-value=2.4e-06  Score=84.02  Aligned_cols=49  Identities=4%  Similarity=-0.087  Sum_probs=36.4

Q ss_pred             HHHHHhhcCCCcccccCccC-ccHHHHHHHHHHH-----HHhccChhHHHHHHHH
Q psy2281         161 MCEASKVQQYPFQIDQQIVE-PDWKIYIRDTAKL-----IISEQSPKKLLEVRTR  209 (287)
Q Consensus       161 ~l~~~~~~dep~~~~d~~~~-~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~  209 (287)
                      ..+.++++|||++++|+... ......+..+.+.     +++||+.+.+...+++
T Consensus       867 ~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~  921 (1022)
T 2o8b_B          867 TAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN  921 (1022)
T ss_dssp             CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSC
T ss_pred             CCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCc
Confidence            34688999999999997653 4456777777654     7799998887766554

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.80  E-value=1.4e-05  Score=68.00  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=29.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL   72 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l   72 (287)
                      ++|.|||||||||+++++++.+.+.  -|.+++.|..
T Consensus       105 i~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          105 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF  141 (304)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence            8999999999999999999998654  6677777754

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.79  E-value=1.5e-05  Score=63.06  Aligned_cols=26  Identities=31%  Similarity=0.459  Sum_probs=23.0

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      |+.  ++|+||||+||||+++++++.+.
T Consensus         1 G~~--i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            1 ARH--VFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCC--EEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CCE--EEEECCCCChHHHHHHHHHhhcc
Confidence            455  89999999999999999999873

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.79  E-value=0.00035  Score=56.05  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.||+||||||+++.|+..+...
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~~~   27 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEKYGIP   27 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            7899999999999999999877644

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.78  E-value=1.1e-05  Score=64.88  Aligned_cols=28  Identities=36%  Similarity=0.520  Sum_probs=24.5

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +|.+  ++|.||||+||||+++.|++.+.+
T Consensus         7 ~g~~--i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            7 RGLL--IVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCE--EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCcE--EEEECcCCCCHHHHHHHHHhhCCC
Confidence            4555  999999999999999999998754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.78  E-value=1.8e-05  Score=65.38  Aligned_cols=40  Identities=20%  Similarity=0.162  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHhc---CCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          20 CKQANHLRNLLKE---GDFPHLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        20 ~~~~~~l~~~~~~---g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ..+++.++..+.+   |+.  ++|+||+||||||+++.|++.+..
T Consensus        32 ~~~l~~~~~~i~~~l~g~~--i~l~G~~GsGKSTl~~~La~~lg~   74 (250)
T 3nwj_A           32 QQILKKKAEEVKPYLNGRS--MYLVGMMGSGKTTVGKIMARSLGY   74 (250)
T ss_dssp             CHHHHHHHHTTHHHHTTCC--EEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             chhhhhhhhhhhhhcCCCE--EEEECCCCCCHHHHHHHHHHhcCC
Confidence            3567777777777   888  999999999999999999998875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.77  E-value=1.1e-05  Score=64.36  Aligned_cols=29  Identities=28%  Similarity=0.495  Sum_probs=24.9

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      .+|..  ++|.|||||||||+++.|++.+.+
T Consensus         4 ~~g~~--i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            4 EKGLL--IVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             CCCCE--EEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHHHhhCC
Confidence            45666  999999999999999999998743

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.77  E-value=0.00015  Score=61.41  Aligned_cols=131  Identities=19%  Similarity=0.219  Sum_probs=68.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCC------CC--------------------------CCH-HHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNET------DH--------------------------LTR-EAQQALRRTM   84 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~------d~--------------------------l~~-~~~~~l~~~i   84 (287)
                      ++|.||+|+||||++..++..+.+.+|-.|..      +.                          .+. .-+....+.+
T Consensus         6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a~~~i   85 (322)
T 3exa_A            6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLATPLI   85 (322)
T ss_dssp             EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHHHHHH
T ss_pred             EEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHHHHHH
Confidence            78999999999999999998876433333321      11                          111 1122334455


Q ss_pred             HhccCCcEEEEEeCCCCCCcHHHhcccceeecCCC-CHHHHHHHHHHHHHHhCCCCCHHHHHHHH--------HHcCCcH
Q psy2281          85 EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAP-THEEIVSVLTNICKKEGLTIPPEFALRLA--------QQSDRNL  155 (287)
Q Consensus        85 ~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~l~--------~~s~G~~  155 (287)
                      +.......+.+.+....--..++..-   +.+.+. .+.++++.+...++..|.   +...+.+.        .....|.
T Consensus        86 ~~i~~~gk~pIlVGGTglYi~aLl~g---~~~~~~~~~~~~R~~l~~~~~~~g~---~~L~~~L~~~DP~~A~~i~pnd~  159 (322)
T 3exa_A           86 TEIHERGRLPFLVGGTGLYVNAVIHQ---FNLGDIRADEDYRHELEAFVNSYGV---QALHDKLSKIDPKAAAAIHPNNY  159 (322)
T ss_dssp             HHHHHTTCEEEEESCCHHHHHHHHHT---CCCCCCBCCHHHHHHHHHHHHHSCH---HHHHHHHHTTCHHHHTTSCTTCH
T ss_pred             HHHHhCCCcEEEEcCcHHHHHHHHcC---CcCCCCCCCHHHHHHHHHHHHhcCH---HHHHHHHHhhCHHHHhhcCcccH
Confidence            55433333332222221111222211   124333 344677777777777664   22333332        3467899


Q ss_pred             HHHHHHHHHHhhcCCCccc
Q psy2281         156 RRAILMCEASKVQQYPFQI  174 (287)
Q Consensus       156 r~al~~l~~~~~~dep~~~  174 (287)
                      +|.+..++-+.....|.+.
T Consensus       160 ~Ri~RALEV~~~TG~~~S~  178 (322)
T 3exa_A          160 RRVIRALEIIKLTGKTVTE  178 (322)
T ss_dssp             HHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHCCCHHH
Confidence            9988888877766666544

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.74  E-value=1.7e-05  Score=61.55  Aligned_cols=29  Identities=24%  Similarity=0.403  Sum_probs=24.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      ++|.|||||||||+++++++.+.  .+++|.
T Consensus        11 i~l~G~~GsGKSTl~~~l~~~~g--~~~i~~   39 (175)
T 1knq_A           11 YVLMGVSGSGKSAVASEVAHQLH--AAFLDG   39 (175)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHT--CEEEEG
T ss_pred             EEEEcCCCCCHHHHHHHHHHhhC--cEEEeC
Confidence            89999999999999999999875  455554

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.74  E-value=2.2e-05  Score=67.77  Aligned_cols=39  Identities=21%  Similarity=0.257  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +...+...+++|+.++++|+||+|+||||++++|++.+.
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            445556666788888899999999999999999998875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.74  E-value=1.1e-05  Score=64.72  Aligned_cols=28  Identities=25%  Similarity=0.191  Sum_probs=24.3

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +|..  +.|.||+||||||++++|++.+.+
T Consensus         5 ~~~~--i~i~G~~GsGKSTl~~~l~~~~~~   32 (211)
T 3asz_A            5 KPFV--IGIAGGTASGKTTLAQALARTLGE   32 (211)
T ss_dssp             CCEE--EEEEESTTSSHHHHHHHHHHHHGG
T ss_pred             CcEE--EEEECCCCCCHHHHHHHHHHHhCC
Confidence            4455  899999999999999999998763

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.73  E-value=1.7e-05  Score=62.43  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=24.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|.|||||||||++++|++...+ .+++|
T Consensus         5 i~l~G~~GaGKSTl~~~L~~~~~g-~~~i~   33 (189)
T 2bdt_A            5 YIITGPAGVGKSTTCKRLAAQLDN-SAYIE   33 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSS-EEEEE
T ss_pred             EEEECCCCCcHHHHHHHHhcccCC-eEEEc
Confidence            789999999999999999986544 45555

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.73  E-value=0.00018  Score=56.50  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.||||+||||+++.|.....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            89999999999999999987753

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.72  E-value=4.5e-05  Score=65.17  Aligned_cols=32  Identities=31%  Similarity=0.514  Sum_probs=27.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNET   69 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~   69 (287)
                      ++|+||+||||||+++.|++.+...++-.|..
T Consensus         8 i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            8 IFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            89999999999999999999987655555543

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.70  E-value=2.9e-05  Score=66.33  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=24.1

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      .+|.+  +.|.|||||||||++++|++.+.
T Consensus        78 ~~g~i--igI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYI--ISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEE--EEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEE--EEEECCCCCCHHHHHHHHHHHHh
Confidence            34445  89999999999999999999876

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.70  E-value=3.3e-05  Score=60.02  Aligned_cols=28  Identities=29%  Similarity=0.385  Sum_probs=24.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVII   65 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~   65 (287)
                      ++++|+|||||||+++.|+..+....+.
T Consensus         6 i~l~G~~GsGKST~a~~La~~l~~~~~~   33 (178)
T 1qhx_A            6 IILNGGSSAGKSGIVRCLQSVLPEPWLA   33 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence            8999999999999999999988654443

>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2

Probab=97.69  E-value=1.6e-05  Score=62.45  Aligned_cols=62  Identities=0%  Similarity=-0.029  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHh
Q psy2281         202 KLLEVRTRLYELLVHSIPVNVLFKYLLEGLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMED  281 (287)
Q Consensus       202 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~  281 (287)
                      ...+-.+..|++++.              +.|++    +.+..+++.+|.+||..|+.++.    ||+|++.+++++|||
T Consensus        27 ~yDk~Gd~HYd~ISA--------------f~KSi----RGSDpDAALywLaRMl~~GEDp~----~IaRRLvi~AsEDIG   84 (213)
T 3ctd_A           27 VYDKNGQNHFDVISA--------------FIKSI----RGSDPDATLYWLANMVEAGEDPN----FIFRRLLISACEDIG   84 (213)
T ss_dssp             -------CHHHHHHH--------------HHHHH----HTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHTTG
T ss_pred             ccCCCchHHHHHHHH--------------HHHHH----hcCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhhcc
Confidence            344555666766654              66766    88889999999999999998887    999999999999999


Q ss_pred             hhhc
Q psy2281         282 TLSN  285 (287)
Q Consensus       282 ~~~~  285 (287)
                      |||.
T Consensus        85 lAdP   88 (213)
T 3ctd_A           85 LADP   88 (213)
T ss_dssp             GGST
T ss_pred             CCCH
Confidence            9984

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.69  E-value=3.4e-05  Score=69.50  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=29.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTR   74 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~   74 (287)
                      ++|+|||||||||++++|++.+.+.  -|.+++.|....
T Consensus       296 I~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~  334 (503)
T 2yhs_A          296 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA  334 (503)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCH
T ss_pred             EEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccch
Confidence            8999999999999999999987533  566666675543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.68  E-value=1.1e-05  Score=65.89  Aligned_cols=29  Identities=41%  Similarity=0.527  Sum_probs=19.2

Q ss_pred             HHhcCCCCcEEEeCCCCCcHHHHHHHHH-HHh
Q psy2281          29 LLKEGDFPHLLFYGPSGAGKKTRIMALL-KEL   59 (287)
Q Consensus        29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~-~~~   59 (287)
                      .+.+|++  ++|+|||||||||++++|+ +..
T Consensus        23 ~v~~G~i--i~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           23 LKSVGVI--LVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CEECCCE--EEEECSCC----CHHHHHHC---
T ss_pred             ccCCCCE--EEEECCCCCCHHHHHHHHHhcCC
Confidence            3466777  9999999999999999999 876

>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2

Probab=97.67  E-value=2.9e-05  Score=60.44  Aligned_cols=47  Identities=15%  Similarity=0.090  Sum_probs=42.6

Q ss_pred             HHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2281         231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN  285 (287)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~  285 (287)
                      +.|++    +.+..+.+.+|.+||..|+.++.    ||+|++.+++++||||||.
T Consensus        14 f~KSi----RGSDpDAAly~LaRMl~~GEDp~----~IaRRLvi~AsEDIGlAdP   60 (201)
T 3bge_A           14 LHKSV----RGSAPDAALYWYARILTAGGDPL----YVARRLLAIASEDVGNADP   60 (201)
T ss_dssp             HHHHH----HTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHTTGGGCT
T ss_pred             HHHHH----hCCCHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhhccCCCH
Confidence            66666    88889999999999999998887    9999999999999999984

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.67  E-value=2.9e-05  Score=68.02  Aligned_cols=31  Identities=35%  Similarity=0.505  Sum_probs=26.4

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      +..|+.  ++|+||||+||||+++++++...+.
T Consensus       166 i~~~~~--i~l~G~~GsGKSTl~~~l~~~~~g~  196 (377)
T 1svm_A          166 IPKKRY--WLFKGPIDSGKTTLAAALLELCGGK  196 (377)
T ss_dssp             CTTCCE--EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             cCCCCE--EEEECCCCCCHHHHHHHHHhhcCCc
Confidence            355665  9999999999999999999988664

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.67  E-value=1.6e-05  Score=68.02  Aligned_cols=24  Identities=25%  Similarity=0.178  Sum_probs=22.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +.|.||||||||||+++|++.+.+
T Consensus        93 vgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           93 IGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCchHHHHHHHHHhhccc
Confidence            899999999999999999998764

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.66  E-value=4e-05  Score=62.65  Aligned_cols=44  Identities=18%  Similarity=0.320  Sum_probs=33.1

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHH--hC-------CCEEEEeCCCCCCHH
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKE--LY-------GPVIILNETDHLTRE   75 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~--~~-------~~~i~ide~d~l~~~   75 (287)
                      +..|+.  ++|+||||+||||+++.++..  ..       ..+++++..+.+...
T Consensus        21 i~~G~~--~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~   73 (243)
T 1n0w_A           21 IETGSI--TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPE   73 (243)
T ss_dssp             EETTSE--EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH
T ss_pred             CcCCeE--EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHH
Confidence            345666  999999999999999999995  31       228888876644444

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.66  E-value=0.00036  Score=55.94  Aligned_cols=29  Identities=28%  Similarity=0.428  Sum_probs=24.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIIL   66 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~i   66 (287)
                      ++|.||+||||||+++.|+..+....+-.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3fb4_A            3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST   31 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence            78999999999999999998876543333

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.64  E-value=2.8e-05  Score=61.76  Aligned_cols=27  Identities=30%  Similarity=0.346  Sum_probs=23.3

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +|+.  ++|.||+|+|||||+++|++...
T Consensus        18 ~g~~--ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKT--LVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCE--EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCE--EEEECcCCCCHHHHHHHHHhhCC
Confidence            3445  89999999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.62  E-value=0.00024  Score=60.12  Aligned_cols=31  Identities=26%  Similarity=0.447  Sum_probs=25.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      ++|.||+|+||||++..++..+.+.+|-.|.
T Consensus        13 i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A           13 IFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             EEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            7899999999999999999988754444443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.62  E-value=1e-05  Score=68.57  Aligned_cols=46  Identities=20%  Similarity=0.130  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---C-CEEEEeC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY---G-PVIILNE   68 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~-~~i~ide   68 (287)
                      ..++.+..-+..|++  ++|.||||+||||+++.+++...   + .+++++.
T Consensus        23 ~~Ld~i~~~l~~G~~--~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~   72 (296)
T 1cr0_A           23 TGINDKTLGARGGEV--IMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (296)
T ss_dssp             TTHHHHHCSBCTTCE--EEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             HHHHHHhcCCCCCeE--EEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            345555555677888  99999999999999999998874   3 3666653

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.60  E-value=4.8e-05  Score=63.02  Aligned_cols=31  Identities=32%  Similarity=0.567  Sum_probs=26.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      ++|.|||||||||+++.|++.+...++-.|+
T Consensus         4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~   34 (253)
T 2ze6_A            4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDR   34 (253)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred             EEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence            7899999999999999999988766555554

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=97.60  E-value=0.00016  Score=59.04  Aligned_cols=24  Identities=21%  Similarity=0.574  Sum_probs=19.2

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~   56 (287)
                      .+|+.  +++.||+||||||++..++
T Consensus        74 ~~g~~--~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           74 SQNSV--VIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHCSE--EEEECCTTSSHHHHHHHHH
T ss_pred             hcCCE--EEEEeCCCCCcHHhHHHHH
Confidence            35666  9999999999999776554

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.59  E-value=5.4e-05  Score=59.02  Aligned_cols=31  Identities=42%  Similarity=0.419  Sum_probs=26.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh---CCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL---YGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~ide   68 (287)
                      ++|.|++||||||+++.+++.+   ..+.+.+|+
T Consensus         8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~   41 (179)
T 2pez_A            8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG   41 (179)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence            8999999999999999999987   444666763

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.59  E-value=5.7e-05  Score=64.65  Aligned_cols=23  Identities=26%  Similarity=0.196  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.|.|||||||||++++|.+.+.
T Consensus        95 igI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           95 IGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            78999999999999999999876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.58  E-value=1.5e-05  Score=70.73  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=31.6

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ...++..+..|+.++++|+||||+|||||+++|++..
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            6677777788988779999999999999999999864

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.58  E-value=0.00011  Score=59.02  Aligned_cols=42  Identities=19%  Similarity=0.195  Sum_probs=31.3

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCH
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTR   74 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~   74 (287)
                      ..|+.  ++|+||||+||||+++.++......+++++..+.++.
T Consensus        18 ~~G~~--~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~   59 (220)
T 2cvh_A           18 APGVL--TQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSP   59 (220)
T ss_dssp             CTTSE--EEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCH
T ss_pred             cCCEE--EEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCH
Confidence            34555  8999999999999999999833334888886543443

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.57  E-value=4e-05  Score=63.08  Aligned_cols=23  Identities=26%  Similarity=0.470  Sum_probs=21.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.|||||||||++++|+..+.
T Consensus        30 i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           30 AVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999997664

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.57  E-value=4.5e-05  Score=60.89  Aligned_cols=27  Identities=41%  Similarity=0.488  Sum_probs=23.5

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      .|..  ++|.|||||||||+++.|+..+.
T Consensus        11 ~~~~--i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPP--LVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCC--EEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCE--EEEECCCCCCHHHHHHHHHHhCc
Confidence            4555  99999999999999999998774

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.56  E-value=4.5e-05  Score=58.77  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.||+||||||+++.|+..+...
T Consensus         4 i~l~G~~GsGKsT~~~~L~~~l~~~   28 (173)
T 3kb2_A            4 IILEGPDCCFKSTVAAKLSKELKYP   28 (173)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCe
Confidence            7899999999999999999988754

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.56  E-value=4.6e-05  Score=63.06  Aligned_cols=31  Identities=39%  Similarity=0.551  Sum_probs=26.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      ++|.|||||||||+++.|++.+....+++|.
T Consensus        35 i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~   65 (253)
T 2p5t_B           35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG   65 (253)
T ss_dssp             EEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence            8899999999999999999988654566664

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.55  E-value=0.00012  Score=61.67  Aligned_cols=30  Identities=33%  Similarity=0.602  Sum_probs=25.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|.|||||||||+++.++..+....+.|+
T Consensus        36 ivl~G~sGsGKSTla~~L~~~~~~~~~~Is   65 (287)
T 1gvn_B           36 FLLGGQPGSGKTSLRSAIFEETQGNVIVID   65 (287)
T ss_dssp             EEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence            889999999999999999988743356665

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=97.55  E-value=0.00074  Score=72.88  Aligned_cols=109  Identities=18%  Similarity=0.220  Sum_probs=76.8

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------EEEEeCCCCCCHHHH
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------------------VIILNETDHLTREAQ   77 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------~i~ide~d~l~~~~~   77 (287)
                      .+...+..+-.  ..+.||.|+|||++++.+++.++-.                           -.++||++++..+..
T Consensus       596 tl~~Al~~~~g--g~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vL  673 (3245)
T 3vkg_A          596 TLTQALESRMG--GNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERIL  673 (3245)
T ss_dssp             HHHHHHHTTCE--EEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHH
T ss_pred             HHHHHHHhcCC--CCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHH
Confidence            34444454444  6789999999999999999988644                           568999999988765


Q ss_pred             HHHHHHHHh---------------------ccCCcEEEEEeCC----CCCCcHHHhcccceeecCCCCHHHHHHHHHHHH
Q psy2281          78 QALRRTMEK---------------------YITTCRLILCANS----MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNIC  132 (287)
Q Consensus        78 ~~l~~~i~~---------------------~~~~~~~i~~~~~----~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~  132 (287)
                      ..+...+..                     ..+++.+++++|.    ...+.+.+++||..+.+..|+.+.+.+++   +
T Consensus       674 Svv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---L  750 (3245)
T 3vkg_A          674 SAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVM---L  750 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHH---H
Confidence            554443320                     1234566666663    35699999999999999999887766654   2


Q ss_pred             HHhCCC
Q psy2281         133 KKEGLT  138 (287)
Q Consensus       133 ~~~~~~  138 (287)
                      -..|+.
T Consensus       751 ~s~Gf~  756 (3245)
T 3vkg_A          751 YSQGFK  756 (3245)
T ss_dssp             HTTTCS
T ss_pred             HHcccc
Confidence            344553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=97.54  E-value=0.00089  Score=67.29  Aligned_cols=49  Identities=18%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             CCCCCCccCcHHHHHHHHHHHhc--CCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLKE--GDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      |.....++|....++.|...+..  +....+.|+|+.|+|||||++.++..
T Consensus       120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            55667789999999999888843  22223889999999999999887654

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.53  E-value=5.9e-05  Score=59.00  Aligned_cols=31  Identities=23%  Similarity=0.154  Sum_probs=25.5

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      .++|+||+||||||+++.|+..+....+-.|
T Consensus         7 ~i~l~G~~GsGKst~a~~La~~l~~~~i~~d   37 (185)
T 3trf_A            7 NIYLIGLMGAGKTSVGSQLAKLTKRILYDSD   37 (185)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            3899999999999999999998875444333

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.52  E-value=4.1e-05  Score=59.47  Aligned_cols=33  Identities=27%  Similarity=0.314  Sum_probs=25.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC-----EEEEeCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP-----VIILNETD   70 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~-----~i~ide~d   70 (287)
                      +.|+||+||||||+++.|++.+.+.     .|.+|+.+
T Consensus         5 v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~   42 (171)
T 2f1r_A            5 LSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG   42 (171)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence            8899999999999999999997643     67888765

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.52  E-value=8.9e-05  Score=64.37  Aligned_cols=40  Identities=20%  Similarity=0.331  Sum_probs=32.2

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---------CCEEEEeCCCCC
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY---------GPVIILNETDHL   72 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---------~~~i~ide~d~l   72 (287)
                      ..|++  +.|+||||+|||||++.++....         +.++++|..+.+
T Consensus       129 ~~G~i--~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~  177 (349)
T 1pzn_A          129 ETQAI--TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF  177 (349)
T ss_dssp             ESSEE--EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred             CCCeE--EEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC
Confidence            44555  89999999999999999999872         336999986654

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.52  E-value=5.8e-05  Score=60.05  Aligned_cols=24  Identities=25%  Similarity=0.249  Sum_probs=22.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|++.+..
T Consensus        21 I~l~G~~GsGKSTla~~L~~~lg~   44 (202)
T 3t61_A           21 IVVMGVSGSGKSSVGEAIAEACGY   44 (202)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998864

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.51  E-value=0.00015  Score=67.05  Aligned_cols=76  Identities=20%  Similarity=0.255  Sum_probs=51.6

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC--------------------------------------
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--------------------------------------   60 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--------------------------------------   60 (287)
                      +......+..... +..  +++.|||||||||++.+++..+.                                      
T Consensus       191 ~~~Q~~Av~~~~~-~~~--~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~  267 (574)
T 3e1s_A          191 SEEQASVLDQLAG-HRL--VVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGP  267 (574)
T ss_dssp             CHHHHHHHHHHTT-CSE--EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEET
T ss_pred             CHHHHHHHHHHHh-CCE--EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCc
Confidence            3455566665553 333  89999999999999998876431                                      


Q ss_pred             ------------CCEEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          61 ------------GPVIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        61 ------------~~~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                                  .++++|||+..++......+   +...+...++++.....
T Consensus       268 ~~~~~~~~~~~~~dvlIIDEasml~~~~~~~L---l~~~~~~~~lilvGD~~  316 (574)
T 3e1s_A          268 QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSL---LAAVPPGARVLLVGDTD  316 (574)
T ss_dssp             TEESCSSSSCCSCSEEEECCGGGCCHHHHHHH---HTTSCTTCEEEEEECTT
T ss_pred             chhhhhhcccccCCEEEEcCccCCCHHHHHHH---HHhCcCCCEEEEEeccc
Confidence                        01799999998876644444   44445567777776543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.50  E-value=0.00053  Score=58.91  Aligned_cols=32  Identities=22%  Similarity=0.464  Sum_probs=26.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNET   69 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~   69 (287)
                      ++|.||+||||||+++.|+..+...+|-.|..
T Consensus        10 I~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A           10 IVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             EEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            88999999999999999999887544444443

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.50  E-value=6.9e-05  Score=58.17  Aligned_cols=25  Identities=40%  Similarity=0.492  Sum_probs=22.9

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      .++|.|||||||||+++.|++.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~   30 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDL   30 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            3899999999999999999998874

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.49  E-value=3.4e-05  Score=66.71  Aligned_cols=29  Identities=31%  Similarity=0.169  Sum_probs=24.9

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.+|..  +.|.||||+|||||++++++.+.
T Consensus        52 ~~~g~~--v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           52 TGRAIR--VGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             CCCSEE--EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             cCCCeE--EEEECCCCCCHHHHHHHHHHhhh
Confidence            355666  99999999999999999998874

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.47  E-value=4.4e-05  Score=66.72  Aligned_cols=28  Identities=14%  Similarity=0.185  Sum_probs=24.7

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      |+.  ++|+||||||||||+++|++.+.+.
T Consensus       170 g~k--~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          170 AKT--VAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             CEE--EEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             hCe--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            555  9999999999999999999998753

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.47  E-value=6.2e-05  Score=62.25  Aligned_cols=28  Identities=39%  Similarity=0.438  Sum_probs=24.0

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ..|..  +.|.||+||||||++++|+..+.
T Consensus        25 ~~g~~--I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           25 AIAPV--ITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             TTSCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcE--EEEECCCCCCHHHHHHHHHHhcC
Confidence            44555  99999999999999999997765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.46  E-value=6.8e-05  Score=58.55  Aligned_cols=24  Identities=33%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      .+|+||||+||||++++|...+.+
T Consensus        29 ~~i~G~NGsGKStll~ai~~~l~~   52 (182)
T 3kta_A           29 TAIVGANGSGKSNIGDAILFVLGG   52 (182)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            899999999999999999998765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.44  E-value=7.7e-05  Score=60.34  Aligned_cols=24  Identities=42%  Similarity=0.488  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +.|.||+||||||+++.|++.+..
T Consensus         8 i~i~G~~GsGKSTl~~~L~~~~g~   31 (227)
T 1cke_A            8 ITIDGPSGAGKGTLCKAMAEALQW   31 (227)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998763

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.43  E-value=5.8e-05  Score=58.16  Aligned_cols=26  Identities=38%  Similarity=0.428  Sum_probs=21.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVI   64 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i   64 (287)
                      ++|.||+||||||+++.| ..+....+
T Consensus         4 I~l~G~~GsGKsT~a~~L-~~~g~~~i   29 (179)
T 3lw7_A            4 ILITGMPGSGKSEFAKLL-KERGAKVI   29 (179)
T ss_dssp             EEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred             EEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence            789999999999999999 65554333

>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A

Probab=97.43  E-value=3.7e-05  Score=59.96  Aligned_cols=46  Identities=4%  Similarity=-0.016  Sum_probs=40.8

Q ss_pred             HHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2281         231 LLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN  285 (287)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~  285 (287)
                      +.|++    +.+..+++.+|.+||..|+ ++.    ||+|++.+++++||||||.
T Consensus        21 f~KSi----RGSDpDAAly~LaRml~~G-Dp~----~IaRRLvi~AsEDIGlAdP   66 (204)
T 2r9g_A           21 FQKSI----RGSDVDAALHYLARLVEAG-DLA----SICRRLMVIGYEDIGLGNP   66 (204)
T ss_dssp             HHHHH----HTTCHHHHHHHHHHHHHHT-CHH----HHHHHHHHHHHHTTGGGCH
T ss_pred             HHHHH----hcCCHHHHHHHHHHHHHcC-CHH----HHHHHHHHHHHhhccCCCH
Confidence            56666    7888899999999999999 766    8999999999999999974

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.41  E-value=0.00011  Score=57.23  Aligned_cols=25  Identities=28%  Similarity=0.242  Sum_probs=22.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|+|++||||||+++.++..+...
T Consensus        14 i~i~G~~GsGKst~~~~l~~~~~~~   38 (180)
T 3iij_A           14 ILLTGTPGVGKTTLGKELASKSGLK   38 (180)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHhCCe
Confidence            9999999999999999999887654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.41  E-value=8.4e-05  Score=58.27  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.||+||||||+++.|+..+.
T Consensus         6 I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            6 VVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999775

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.41  E-value=6.4e-05  Score=58.84  Aligned_cols=24  Identities=46%  Similarity=0.664  Sum_probs=22.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|+..+..
T Consensus         7 I~l~G~~GsGKST~~~~La~~l~~   30 (186)
T 3cm0_A            7 VIFLGPPGAGKGTQASRLAQELGF   30 (186)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999987753

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.38  E-value=0.00023  Score=69.34  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~   56 (287)
                      ..|++  ++|+||||+||||+++.++
T Consensus       660 ~~g~i--~~ItGpNGsGKSTlLr~ia  683 (934)
T 3thx_A          660 DKQMF--HIITGPNMGGKSTYIRQTG  683 (934)
T ss_dssp             TTBCE--EEEECCTTSSHHHHHHHHH
T ss_pred             CCCeE--EEEECCCCCCHHHHHHHHH
Confidence            34666  9999999999999999984

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.36  E-value=9.9e-05  Score=57.27  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|||||||||+++.|+..
T Consensus         5 I~i~G~~GsGKST~a~~L~~~   25 (181)
T 1ly1_A            5 ILTIGCPGSGKSTWAREFIAK   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHhh
Confidence            789999999999999999983

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.36  E-value=0.00029  Score=57.02  Aligned_cols=27  Identities=33%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ..|.+  ++++||+|+||||++..++...
T Consensus        10 ~~G~i--~litG~mGsGKTT~ll~~~~r~   36 (223)
T 2b8t_A           10 KIGWI--EFITGPMFAGKTAELIRRLHRL   36 (223)
T ss_dssp             -CCEE--EEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEE--EEEECCCCCcHHHHHHHHHHHH
Confidence            34555  8999999999999887766554

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.36  E-value=0.00037  Score=59.33  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|+||||+||||++..++..
T Consensus       126 iLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          126 VIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEECSCSSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHh
Confidence            799999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.36  E-value=0.00011  Score=56.54  Aligned_cols=31  Identities=29%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      +++|.|++||||||+++.|+..+..+++-.|
T Consensus         9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~D   39 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGLALKLEVLDTD   39 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            4899999999999999999998876544333

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.36  E-value=3.3e-05  Score=67.04  Aligned_cols=35  Identities=34%  Similarity=0.457  Sum_probs=28.2

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++.|.... .|+.  ++|.||||+|||||+++|++...
T Consensus       206 l~~L~~~~-~G~~--~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          206 LKPLEEAL-TGRI--SIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             HHHHHHHH-TTSE--EEEECCTTSSHHHHHHHHHCCSS
T ss_pred             HHHHHHhc-CCCE--EEEECCCCccHHHHHHHHhcccc
Confidence            44555443 5777  99999999999999999998765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.35  E-value=0.00014  Score=56.80  Aligned_cols=27  Identities=30%  Similarity=0.283  Sum_probs=23.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVI   64 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i   64 (287)
                      ++|.|++||||||+++.|+..+...++
T Consensus         5 I~l~G~~GsGKsT~a~~La~~lg~~~i   31 (184)
T 2iyv_A            5 AVLVGLPGSGKSTIGRRLAKALGVGLL   31 (184)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            899999999999999999998875433

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.35  E-value=7.9e-05  Score=65.27  Aligned_cols=29  Identities=28%  Similarity=0.580  Sum_probs=25.2

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.+|+.  ++++||+||||||+++++++.+.
T Consensus       133 ~~~g~~--i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRKMGL--ILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSSSEE--EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcCCCE--EEEECCCCCCHHHHHHHHHhhcC
Confidence            355666  99999999999999999999875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.34  E-value=9.3e-05  Score=66.71  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=30.3

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETD   70 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d   70 (287)
                      .+ ++  +.|.||||||||||+++|++.+.+.  .|.+++.+
T Consensus        28 ~~-e~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~   66 (483)
T 3euj_A           28 DE-LV--TTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT   66 (483)
T ss_dssp             CS-SE--EEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred             cc-ce--EEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence            44 55  8999999999999999999998765  56666654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.34  E-value=6.8e-05  Score=61.09  Aligned_cols=29  Identities=28%  Similarity=0.377  Sum_probs=24.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      +.|.||+||||||++++|++. .+.+++..
T Consensus        23 i~i~G~~GsGKSTl~~~L~~~-~g~v~~~~   51 (230)
T 2vp4_A           23 VLIEGNIGSGKTTYLNHFEKY-KNDICLLT   51 (230)
T ss_dssp             EEEECSTTSCHHHHHHTTGGG-TTTEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHhc-cCCeEEEe
Confidence            899999999999999999987 55455444

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.33  E-value=0.00029  Score=56.03  Aligned_cols=29  Identities=31%  Similarity=0.209  Sum_probs=24.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh---CCCEEEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL---YGPVIIL   66 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~i   66 (287)
                      +.+.||+||||||+++.+++.+   .+.++++
T Consensus        25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~   56 (201)
T 1rz3_A           25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVF   56 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence            8999999999999999999976   3335555

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.33  E-value=0.00023  Score=55.90  Aligned_cols=32  Identities=31%  Similarity=0.340  Sum_probs=27.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh---CCCEEEEeCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL---YGPVIILNET   69 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~ide~   69 (287)
                      ++|.|++||||||+++.|+..+   ...++..|+.
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~   37 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREP   37 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            7899999999999999999987   4446777764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.33  E-value=0.00012  Score=57.61  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=24.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|.|++||||||+++.++..+....+-.|
T Consensus         8 I~l~G~~GsGKST~~~~L~~~l~~~~i~~D   37 (193)
T 2rhm_A            8 IIVTGHPATGKTTLSQALATGLRLPLLSKD   37 (193)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEecHH
Confidence            899999999999999999998765444333

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.31  E-value=0.00032  Score=59.22  Aligned_cols=23  Identities=30%  Similarity=0.693  Sum_probs=21.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.|.||+||||||+++.|++.+.
T Consensus        34 i~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           34 IFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999998875

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.31  E-value=0.00012  Score=57.49  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=21.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.|++||||||+++.|+..+.
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            4 GIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999875

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.30  E-value=3.9e-05  Score=62.35  Aligned_cols=33  Identities=27%  Similarity=0.423  Sum_probs=24.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETD   70 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d   70 (287)
                      ++|+|||||||||++++|++.+.+.  .|.+++.+
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~   64 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT   64 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred             EEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence            6899999999999999999999866  45666654

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.30  E-value=0.00013  Score=57.98  Aligned_cols=30  Identities=40%  Similarity=0.585  Sum_probs=25.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|.|++||||||+++.|+..+....+-.|
T Consensus        23 I~l~G~~GsGKST~a~~La~~l~~~~i~~d   52 (201)
T 2cdn_A           23 VLLLGPPGAGKGTQAVKLAEKLGIPQISTG   52 (201)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence            899999999999999999998865444443

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.30  E-value=0.00019  Score=62.20  Aligned_cols=51  Identities=18%  Similarity=0.326  Sum_probs=36.2

Q ss_pred             HHHHHHHhcCCCCc---EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCCH
Q psy2281          24 NHLRNLLKEGDFPH---LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLTR   74 (287)
Q Consensus        24 ~~l~~~~~~g~~~~---~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~~   74 (287)
                      ..|...+..|.+|.   ++|+||||+|||||+..++....   +.++++|.-+....
T Consensus        47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~  103 (356)
T 3hr8_A           47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDP  103 (356)
T ss_dssp             HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCH
T ss_pred             HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccch
Confidence            35555554233332   89999999999999999988753   34888987665543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.30  E-value=0.00022  Score=62.97  Aligned_cols=52  Identities=12%  Similarity=0.220  Sum_probs=34.3

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHh-C--------CCEEEEeCCCCCCHHHHHHHHHHH
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKEL-Y--------GPVIILNETDHLTREAQQALRRTM   84 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~-~--------~~~i~ide~d~l~~~~~~~l~~~i   84 (287)
                      ..|++  +.|+||||+|||||++.++-.. .        ..++++|.-+.+.......+.+.+
T Consensus       176 ~~Gei--~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~  236 (400)
T 3lda_A          176 ETGSI--TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRF  236 (400)
T ss_dssp             ETTSE--EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred             CCCcE--EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHc
Confidence            34555  9999999999999999765332 2        128899977655554333333333

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.29  E-value=0.00014  Score=66.77  Aligned_cols=46  Identities=33%  Similarity=0.375  Sum_probs=33.8

Q ss_pred             HHHHHHHHH----HhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCC----CEEEEeC
Q psy2281          21 KQANHLRNL----LKEGDFPHLLFYGPSGAGKKTRIMALLKELYG----PVIILNE   68 (287)
Q Consensus        21 ~~~~~l~~~----~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~~i~ide   68 (287)
                      ++...++..    +.+|..  ++|+|+|||||||++++|++.+.+    .+.++|+
T Consensus       353 eV~~vLR~~~~~~~~~G~i--I~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg  406 (552)
T 3cr8_A          353 EVLAELHRQTPPRERQGFT--VFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG  406 (552)
T ss_dssp             HHHHHHHHHSCCGGGSCEE--EEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred             chhhhhhhhcccccccceE--EEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence            344444443    345666  999999999999999999999863    2556775

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.29  E-value=0.0002  Score=60.86  Aligned_cols=38  Identities=26%  Similarity=0.401  Sum_probs=28.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC---EEEEeCCCCCCHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP---VIILNETDHLTREA   76 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~ide~d~l~~~~   76 (287)
                      ++++||||+||||++..+++.+...   ++++| .|......
T Consensus       107 i~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~-~D~~r~~a  147 (306)
T 1vma_A          107 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA-ADTFRAAA  147 (306)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE-ECTTCHHH
T ss_pred             EEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc-cccccHHH
Confidence            7899999999999999999887432   44444 55444443

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.29  E-value=0.00018  Score=56.58  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=22.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|+..+..
T Consensus        12 I~l~G~~GsGKsT~~~~La~~l~~   35 (196)
T 2c95_A           12 IFVVGGPGSGKGTQCEKIVQKYGY   35 (196)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.28  E-value=0.00011  Score=58.55  Aligned_cols=20  Identities=25%  Similarity=0.258  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      ++|+||+||||||+++.|++
T Consensus         5 i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            5 VGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEECSTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999988

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.27  E-value=0.00015  Score=55.65  Aligned_cols=31  Identities=26%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      ++|.|++||||||+++.|+..+...++-.|+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~   33 (168)
T 2pt5_A            3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDVDE   33 (168)
T ss_dssp             EEEESCTTSCHHHHHHHHHHHHTCCEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEECcH
Confidence            7899999999999999999987754444343

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.27  E-value=0.00016  Score=57.20  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=22.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|++.+..
T Consensus         3 I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            3 IAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             EEEECCCccCHHHHHHHHHHhcCC
Confidence            789999999999999999998874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.27  E-value=0.00032  Score=62.38  Aligned_cols=24  Identities=33%  Similarity=0.224  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++++|+|||||||+++.++..+..
T Consensus       261 Iil~G~pGSGKSTla~~L~~~~~~  284 (416)
T 3zvl_A          261 VVAVGFPGAGKSTFIQEHLVSAGY  284 (416)
T ss_dssp             EEEESCTTSSHHHHHHHHTGGGTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCc
Confidence            889999999999999999987753

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.26  E-value=0.00014  Score=57.04  Aligned_cols=30  Identities=30%  Similarity=0.361  Sum_probs=25.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC---CEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG---PVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~id   67 (287)
                      ++|.|++||||||+++.++..+..   .++++|
T Consensus        16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   48 (186)
T 2yvu_A           16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD   48 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence            899999999999999999988742   255665

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.26  E-value=0.00016  Score=56.69  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHH
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .++|+|++||||||+++.|+..
T Consensus        12 ~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           12 NILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3899999999999999999998

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.25  E-value=0.00013  Score=57.98  Aligned_cols=27  Identities=26%  Similarity=0.226  Sum_probs=22.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVII   65 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~   65 (287)
                      ++|+|++||||||+++.|++ +...++-
T Consensus         4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~   30 (204)
T 2if2_A            4 IGLTGNIGCGKSTVAQMFRE-LGAYVLD   30 (204)
T ss_dssp             EEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence            78999999999999999999 5433333

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.24  E-value=0.00019  Score=55.29  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=22.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.|++||||||+++.|+..+...
T Consensus         5 I~l~G~~GsGKsT~a~~La~~lg~~   29 (173)
T 1e6c_A            5 IFMVGARGCGMTTVGRELARALGYE   29 (173)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCc
Confidence            8999999999999999999987643

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.24  E-value=0.00015  Score=57.81  Aligned_cols=31  Identities=23%  Similarity=0.242  Sum_probs=25.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC--CEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG--PVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~--~~i~ide   68 (287)
                      ++|.|++||||||+++.|+..+..  +++..++
T Consensus         7 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~   39 (213)
T 2plr_A            7 IAFEGIDGSGKSSQATLLKDWIELKRDVYLTEW   39 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTTTSCEEEEET
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecC
Confidence            899999999999999999998764  3555544

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.23  E-value=0.00022  Score=56.61  Aligned_cols=33  Identities=24%  Similarity=0.434  Sum_probs=27.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC-CCEEEEeCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY-GPVIILNETD   70 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~-~~~i~ide~d   70 (287)
                      ++|.|++||||||+++.|+..+. .+++.+++..
T Consensus         7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~   40 (204)
T 2v54_A            7 IVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQ   40 (204)
T ss_dssp             EEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCC
Confidence            89999999999999999999873 3366677654

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.22  E-value=0.0002  Score=57.72  Aligned_cols=25  Identities=32%  Similarity=0.578  Sum_probs=22.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.|++||||||+++.|+..+...
T Consensus         7 I~l~G~~GsGKsT~a~~La~~l~~~   31 (220)
T 1aky_A            7 MVLIGPPGAGKGTQAPNLQERFHAA   31 (220)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCce
Confidence            8999999999999999999988743

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.21  E-value=0.00042  Score=56.89  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|||||||||+++.|+..+..
T Consensus        32 I~l~G~~GsGKsT~a~~L~~~~g~   55 (243)
T 3tlx_A           32 YIFLGAPGSGKGTQSLNLKKSHCY   55 (243)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.21  E-value=0.00024  Score=56.08  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|+..+..
T Consensus        15 I~l~G~~GsGKsT~a~~L~~~l~~   38 (199)
T 2bwj_A           15 IFIIGGPGSGKGTQCEKLVEKYGF   38 (199)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998764

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.21  E-value=0.00021  Score=56.04  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|+..+..
T Consensus         6 I~l~G~~GsGKsT~a~~L~~~~~~   29 (196)
T 1tev_A            6 VFVLGGPGAGKGTQCARIVEKYGY   29 (196)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999988764

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.20  E-value=0.00059  Score=53.84  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      |.+  .+++||.|+||||.+.-++...
T Consensus         8 g~i--~v~~G~mgsGKTT~ll~~a~r~   32 (191)
T 1xx6_A            8 GWV--EVIVGPMYSGKSEELIRRIRRA   32 (191)
T ss_dssp             CEE--EEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEE--EEEECCCCCcHHHHHHHHHHHH
Confidence            444  8999999999999987776554

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.20  E-value=0.00011  Score=62.40  Aligned_cols=29  Identities=28%  Similarity=0.297  Sum_probs=25.4

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      .|+.  +.|.||||+|||||+++|++...+.
T Consensus       168 ~gei--v~l~G~sG~GKSTll~~l~g~~~~~  196 (301)
T 1u0l_A          168 KGKI--STMAGLSGVGKSSLLNAINPGLKLR  196 (301)
T ss_dssp             SSSE--EEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred             cCCe--EEEECCCCCcHHHHHHHhccccccc
Confidence            4666  8999999999999999999987654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.18  E-value=0.00015  Score=56.52  Aligned_cols=27  Identities=30%  Similarity=0.525  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVI   64 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i   64 (287)
                      ++|.|++||||||+++.|+..+...++
T Consensus         8 I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            8 IWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            899999999999999999988775433

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.17  E-value=0.0001  Score=58.87  Aligned_cols=22  Identities=32%  Similarity=0.350  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|.||+||||||+++.|++.+
T Consensus        24 i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           24 IGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             EEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            8899999999999999999976

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.16  E-value=0.00019  Score=57.57  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----CCEEEEe
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY----GPVIILN   67 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----~~~i~id   67 (287)
                      ..|.+  ++|.|++||||||+++.|++.+.    ...+++|
T Consensus        23 ~~~~~--i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~   61 (211)
T 1m7g_A           23 QRGLT--IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD   61 (211)
T ss_dssp             SSCEE--EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence            44555  89999999999999999998775    2266675

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.15  E-value=0.00026  Score=57.13  Aligned_cols=24  Identities=17%  Similarity=0.236  Sum_probs=22.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.||+||||||+++.|+..+..
T Consensus         8 I~l~G~~GsGKsT~~~~La~~l~~   31 (222)
T 1zak_A            8 VMISGAPASGKGTQCELIKTKYQL   31 (222)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998863

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.15  E-value=0.00038  Score=57.76  Aligned_cols=30  Identities=33%  Similarity=0.350  Sum_probs=24.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH---hCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE---LYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~---~~~~~i~id   67 (287)
                      ++|.|+|||||||+++.|+..   ....++++|
T Consensus         7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i~~~   39 (260)
T 3a4m_A            7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG   39 (260)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence            899999999999999999987   333345454

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.14  E-value=0.00021  Score=57.01  Aligned_cols=32  Identities=28%  Similarity=0.286  Sum_probs=24.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG---PVIILNET   69 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide~   69 (287)
                      ++|.|++||||||+++.|+..+..   ++.++.+.
T Consensus        13 I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~   47 (212)
T 2wwf_A           13 IVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFP   47 (212)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecC
Confidence            899999999999999999987542   24445543

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.14  E-value=0.00057  Score=53.82  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=20.7

Q ss_pred             cCCCCcEEEeCCCCCcHH-HHHHHHHHHh
Q psy2281          32 EGDFPHLLFYGPSGAGKK-TRIMALLKEL   59 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKT-tl~~~l~~~~   59 (287)
                      .|.+  ++++||.|+||| .|++++.+..
T Consensus        19 ~g~l--~fiyG~MgsGKTt~Ll~~i~n~~   45 (195)
T 1w4r_A           19 RGQI--QVILGPMFSGKSTELMRRVRRFQ   45 (195)
T ss_dssp             CCEE--EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             ceEE--EEEECCCCCcHHHHHHHHHHHHH
Confidence            3555  899999999999 7788876654

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=97.14  E-value=0.00068  Score=63.77  Aligned_cols=39  Identities=21%  Similarity=0.457  Sum_probs=29.4

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      -+....+++...+....+  .+|.||||||||+++-.+...
T Consensus       190 LN~~Q~~AV~~al~~~~~--~lI~GPPGTGKT~ti~~~I~~  228 (646)
T 4b3f_X          190 LDTSQKEAVLFALSQKEL--AIIHGPPGTGKTTTVVEIILQ  228 (646)
T ss_dssp             CCHHHHHHHHHHHHCSSE--EEEECCTTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCCCc--eEEECCCCCCHHHHHHHHHHH
Confidence            366777888888766555  899999999999876544433

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.14  E-value=0.0002  Score=57.46  Aligned_cols=29  Identities=24%  Similarity=0.336  Sum_probs=24.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIIL   66 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~i   66 (287)
                      ++|.||+||||||+++.|+..+....+-.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~   31 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            78999999999999999999876444433

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.12  E-value=0.00028  Score=53.36  Aligned_cols=23  Identities=39%  Similarity=0.635  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      .+|+||||+||||++.+|.-.+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~~~l~   48 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILVGLY   48 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            79999999999999999987653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.11  E-value=0.0014  Score=49.85  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+||||+++.+.+..
T Consensus         9 i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            9 VCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998865

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.11  E-value=0.0003  Score=57.28  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +.|.||+||||||+++.|++.+..
T Consensus        12 i~i~G~~GsGKsTla~~la~~lg~   35 (233)
T 3r20_A           12 VAVDGPAGTGKSSVSRGLARALGA   35 (233)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999988763

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.11  E-value=0.00026  Score=55.43  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|+..+..
T Consensus         9 I~l~G~~GsGKsT~~~~L~~~l~~   32 (194)
T 1qf9_A            9 VFVLGGPGSGKGTQCANIVRDFGW   32 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.11  E-value=0.00023  Score=56.86  Aligned_cols=32  Identities=25%  Similarity=0.309  Sum_probs=25.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY---GPVIILNET   69 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~   69 (287)
                      ++|.|++||||||+++.|+..+.   .++..+++.
T Consensus        12 I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~   46 (215)
T 1nn5_A           12 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFP   46 (215)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCC
Confidence            89999999999999999998753   225555543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.10  E-value=0.00031  Score=56.63  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|||||||+|.++.|+..+..
T Consensus        32 I~llGpPGsGKgTqa~~L~~~~g~   55 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQKFHF   55 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            788999999999999999998863

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.10  E-value=0.00025  Score=57.43  Aligned_cols=24  Identities=21%  Similarity=0.261  Sum_probs=22.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|+..+..
T Consensus        10 I~l~G~~GsGKsT~a~~La~~l~~   33 (227)
T 1zd8_A           10 AVIMGAPGSGKGTVSSRITTHFEL   33 (227)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHSSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            899999999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.10  E-value=0.00023  Score=60.45  Aligned_cols=28  Identities=32%  Similarity=0.380  Sum_probs=23.6

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      .|+.  +.|.||||+|||||+++|+ ...+.
T Consensus       164 ~G~i--~~l~G~sG~GKSTLln~l~-~~~~~  191 (302)
T 2yv5_A          164 EGFI--CILAGPSGVGKSSILSRLT-GEELR  191 (302)
T ss_dssp             TTCE--EEEECSTTSSHHHHHHHHH-SCCCC
T ss_pred             cCcE--EEEECCCCCCHHHHHHHHH-HhhCc
Confidence            3566  8999999999999999999 66543

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.09  E-value=0.00023  Score=57.35  Aligned_cols=29  Identities=28%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIIL   66 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~i   66 (287)
                      ++|.|++||||||+++.|+..+....+-.
T Consensus         8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~   36 (217)
T 3be4_A            8 LILIGAPGSGKGTQCEFIKKEYGLAHLST   36 (217)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence            89999999999999999999886543333

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.08  E-value=0.00068  Score=52.16  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+.+.
T Consensus        12 i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           12 LLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.07  E-value=0.0003  Score=55.57  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.||+|+|||||++.+++...
T Consensus         8 v~lvG~~g~GKSTLl~~l~~~~~   30 (199)
T 2f9l_A            8 VVLIGDSGVGKSNLLSRFTRNEF   30 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            79999999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.07  E-value=0.00028  Score=57.41  Aligned_cols=35  Identities=37%  Similarity=0.560  Sum_probs=27.1

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC--CCEEEEeC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY--GPVIILNE   68 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--~~~i~ide   68 (287)
                      .|.+  ++|.||+||||||+++.|+..+.  ..++...+
T Consensus        25 ~g~~--i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~   61 (229)
T 4eaq_A           25 MSAF--ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTRE   61 (229)
T ss_dssp             CCEE--EEEECCTTSCHHHHHHHHHHHHTTTSCEEEECT
T ss_pred             CCeE--EEEEcCCCCCHHHHHHHHHHHHhcCCCceeecC
Confidence            3444  89999999999999999999886  24554443

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.07  E-value=0.00032  Score=55.62  Aligned_cols=24  Identities=33%  Similarity=0.461  Sum_probs=21.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|+..+..
T Consensus        18 I~l~G~~GsGKsT~~~~L~~~~g~   41 (203)
T 1ukz_A           18 IFVLGGPGAGKGTQCEKLVKDYSF   41 (203)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCc
Confidence            889999999999999999988753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.06  E-value=0.00034  Score=56.15  Aligned_cols=42  Identities=21%  Similarity=0.263  Sum_probs=32.7

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +......+......+..+.+++.|++|+||||+++.+++...
T Consensus        14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            445566666666555666699999999999999999998753

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=97.06  E-value=0.0019  Score=60.27  Aligned_cols=19  Identities=37%  Similarity=0.590  Sum_probs=16.9

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~   56 (287)
                      +++.||+||||||++..+.
T Consensus       167 ~vi~G~pGTGKTt~l~~ll  185 (608)
T 1w36_D          167 SVISGGPGTGKTTTVAKLL  185 (608)
T ss_dssp             EEEECCTTSTHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            8999999999999977654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.06  E-value=0.00028  Score=55.52  Aligned_cols=24  Identities=21%  Similarity=0.497  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +++.||+|+|||||++.+++...+
T Consensus        32 v~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           32 VVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCC
Confidence            799999999999999999997653

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.04  E-value=0.00038  Score=56.30  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=23.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIIL   66 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~i   66 (287)
                      ++|.||+||||||+++.|+..+....+..
T Consensus         3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~   31 (223)
T 2xb4_A            3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES   31 (223)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence            78999999999999999999876433333

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.04  E-value=0.0019  Score=49.53  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        10 i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A           10 VILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.02  E-value=0.00098  Score=50.53  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         8 i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            8 MVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.02  E-value=0.00044  Score=53.73  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=21.7

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +-++|.||+|+||||+++.+++.+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            3389999999999999999998753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.01  E-value=8e-05  Score=63.31  Aligned_cols=28  Identities=32%  Similarity=0.385  Sum_probs=21.7

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +|+.  +.|.||||+|||||+++|++...+
T Consensus       172 ~G~~--~~lvG~sG~GKSTLln~L~g~~~~  199 (307)
T 1t9h_A          172 QDKT--TVFAGQSGVGKSSLLNAISPELGL  199 (307)
T ss_dssp             TTSE--EEEEESHHHHHHHHHHHHCC----
T ss_pred             CCCE--EEEECCCCCCHHHHHHHhcccccc
Confidence            4566  999999999999999999886543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.01  E-value=0.00042  Score=56.42  Aligned_cols=27  Identities=33%  Similarity=0.471  Sum_probs=23.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVI   64 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i   64 (287)
                      ++|.|++||||||+++.|+..+....+
T Consensus        19 I~l~G~~GsGKsT~a~~La~~l~~~~i   45 (233)
T 1ak2_A           19 AVLLGPPGAGKGTQAPKLAKNFCVCHL   45 (233)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence            899999999999999999998874333

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.99  E-value=0.00069  Score=57.97  Aligned_cols=38  Identities=16%  Similarity=0.343  Sum_probs=27.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~   75 (287)
                      ++++||+|+||||++..|++.+...  -+.+.+.|.....
T Consensus       108 I~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~  147 (320)
T 1zu4_A          108 FMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAG  147 (320)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchh
Confidence            7899999999999999999887532  3344445655444

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.97  E-value=0.0063  Score=45.75  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         6 i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.96  E-value=0.0018  Score=50.50  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~~   48 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDTF   48 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCcCHHHHHHHHhcCCC
Confidence            89999999999999999998764

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.96  E-value=0.0002  Score=57.19  Aligned_cols=23  Identities=30%  Similarity=0.417  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.|++||||||+++.|+..+.
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999998875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.96  E-value=0.001  Score=52.81  Aligned_cols=41  Identities=17%  Similarity=0.305  Sum_probs=21.1

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +....+.+.........-.+++.|++|+|||||++.+++..
T Consensus        14 ~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~   54 (204)
T 4gzl_A           14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA   54 (204)
T ss_dssp             ----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence            33344444444433333238999999999999999998654

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.96  E-value=0.00038  Score=58.96  Aligned_cols=30  Identities=23%  Similarity=0.502  Sum_probs=24.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC---C-CEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY---G-PVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~---~-~~i~id   67 (287)
                      ++|+||+|+||||++..|++.+.   + .+.++|
T Consensus       108 i~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~  141 (296)
T 2px0_A          108 IVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT  141 (296)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            89999999999999999998774   2 255555

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.96  E-value=0.0013  Score=51.06  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        10 i~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A           10 IVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998764

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.95  E-value=0.0005  Score=54.57  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=22.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +.|.|++||||||+++.+++.+..
T Consensus         5 i~i~G~~GsGKst~~~~la~~lg~   28 (208)
T 3ake_A            5 VTIDGPSASGKSSVARRVAAALGV   28 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCC
Confidence            889999999999999999998764

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.94  E-value=0.00041  Score=54.81  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPV   63 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~   63 (287)
                      +.|+|++||||||+++.++..+..++
T Consensus        15 IgltG~~GSGKSTva~~L~~~lg~~v   40 (192)
T 2grj_A           15 IGVTGKIGTGKSTVCEILKNKYGAHV   40 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCEE
Confidence            78999999999999999999866433

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.92  E-value=0.0018  Score=51.79  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=19.0

Q ss_pred             hcCCCCcEEEeCCCCCcHHH-HHHHHHHH
Q psy2281          31 KEGDFPHLLFYGPSGAGKKT-RIMALLKE   58 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTt-l~~~l~~~   58 (287)
                      ..|.+  .+++||-|+|||| +++.+-+.
T Consensus        26 ~~G~I--~vitG~M~sGKTT~Llr~~~r~   52 (219)
T 3e2i_A           26 HSGWI--ECITGSMFSGKSEELIRRLRRG   52 (219)
T ss_dssp             -CCEE--EEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceE--EEEECCCCCCHHHHHHHHHHHH
Confidence            34555  7999999999999 56665443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.92  E-value=0.00035  Score=57.01  Aligned_cols=38  Identities=24%  Similarity=0.257  Sum_probs=27.9

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHHHHHHHHh---CCCEEEEeCC
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRIMALLKEL---YGPVIILNET   69 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~ide~   69 (287)
                      +..|+.  ++++||||+||||++..++...   ...+++++.-
T Consensus        20 l~~G~~--~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           20 IPERNV--VLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             EETTCE--EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCcE--EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            356666  9999999999999987776543   2337777743

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.92  E-value=0.0017  Score=49.02  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         7 i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            7 VIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            8999999999999999998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.92  E-value=0.0018  Score=48.76  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+||||+++.+.+...
T Consensus         6 i~v~G~~~~GKssl~~~l~~~~~   28 (166)
T 2ce2_X            6 LVVVGAGGVGKSALTIQLIQNHF   28 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCcC
Confidence            89999999999999999987643

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.90  E-value=0.00068  Score=52.30  Aligned_cols=25  Identities=16%  Similarity=0.080  Sum_probs=21.7

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +-+.|.|++|+||||++..++..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            3388999999999999999998763

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.90  E-value=0.00048  Score=60.14  Aligned_cols=63  Identities=10%  Similarity=-0.059  Sum_probs=46.0

Q ss_pred             HHHHcCCcHHH-----HHH------HHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHH
Q psy2281         147 LAQQSDRNLRR-----AIL------MCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRL  210 (287)
Q Consensus       147 l~~~s~G~~r~-----al~------~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~  210 (287)
                      +.++|+|+.|+     |+.      ..|.++++|||++++|+.....+.+.+.++.+.    ++++|+.+. ...+|++
T Consensus       277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d~~  354 (365)
T 3qf7_A          277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFDRK  354 (365)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCSCE
T ss_pred             chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCCEE
Confidence            34689998888     222      245678899999999998888888888877543    679999875 3344443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.89  E-value=0.0023  Score=48.43  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.89  E-value=0.0018  Score=50.62  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus        26 i~~vG~~~~GKSsl~~~l~~~~~   48 (194)
T 3reg_A           26 IVVVGDGAVGKTCLLLAFSKGEI   48 (194)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            89999999999999999988653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.89  E-value=0.0011  Score=53.40  Aligned_cols=40  Identities=30%  Similarity=0.424  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ...+.++........+.+++.|++|+||||++..++....
T Consensus        24 ~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           24 RLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3455666666555555589999999999999999998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.88  E-value=0.0023  Score=49.00  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+||||+++.+.+..
T Consensus        18 i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           18 YIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998765

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.87  E-value=0.00058  Score=55.66  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +.|.|++||||||+++.|++.+..
T Consensus        19 i~i~G~~gsGKst~~~~l~~~lg~   42 (236)
T 1q3t_A           19 IAIDGPASSGKSTVAKIIAKDFGF   42 (236)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCC
Confidence            899999999999999999998763

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.86  E-value=0.00031  Score=65.49  Aligned_cols=28  Identities=21%  Similarity=0.309  Sum_probs=23.2

Q ss_pred             CCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          34 DFPHLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        34 ~~~~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ..|.++++|||||||||++++|++...+
T Consensus        44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P   71 (608)
T 3szr_A           44 ALPAIAVIGDQSSGKSSVLEALSGVALP   71 (608)
T ss_dssp             CCCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred             cCCeEEEECCCCChHHHHHHHHhCCCCC
Confidence            3455999999999999999999998644

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.86  E-value=0.0082  Score=47.17  Aligned_cols=22  Identities=14%  Similarity=0.218  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        27 i~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           27 VVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            8999999999999999998765

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=96.86  E-value=0.0023  Score=51.18  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        30 i~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           30 LVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998764

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.85  E-value=0.00087  Score=59.00  Aligned_cols=35  Identities=29%  Similarity=0.327  Sum_probs=27.8

Q ss_pred             CCCcEEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeC
Q psy2281          34 DFPHLLFYGPSGAGKKTRIMALLKELYG---PVIILNE   68 (287)
Q Consensus        34 ~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide   68 (287)
                      ..+|+++.||+|+||||+++.++.....   .++++|-
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~   71 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP   71 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence            3456999999999999999999876543   2777773

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.84  E-value=0.0013  Score=56.41  Aligned_cols=38  Identities=21%  Similarity=0.370  Sum_probs=29.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh---------CCCEEEEeCCCCCCHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL---------YGPVIILNETDHLTRE   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~---------~~~~i~ide~d~l~~~   75 (287)
                      +.|+||||+||||++..++...         ...+++++--+.+...
T Consensus       110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~  156 (324)
T 2z43_A          110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWE  156 (324)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred             EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH
Confidence            8999999999999999998764         2238888865544444

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.83  E-value=0.0028  Score=48.02  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+||||+++.+++..
T Consensus         9 i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1r2q_A            9 LVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998743

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.83  E-value=0.00065  Score=60.63  Aligned_cols=29  Identities=31%  Similarity=0.401  Sum_probs=24.2

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      .|++  .+|+||||+||||++.+++..+.+.
T Consensus        25 ~~~~--~~i~G~nG~GKstll~ai~~~~~~~   53 (430)
T 1w1w_A           25 ESNF--TSIIGPNGSGKSNMMDAISFVLGVR   53 (430)
T ss_dssp             TCSE--EEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred             CCCE--EEEECCCCCCHHHHHHHHHhhhccc
Confidence            3455  8999999999999999999987653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.83  E-value=0.00069  Score=55.82  Aligned_cols=24  Identities=17%  Similarity=0.199  Sum_probs=21.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++||||||+++.|+..+..
T Consensus        25 I~I~G~~GSGKST~a~~L~~~lg~   48 (252)
T 1uj2_A           25 IGVSGGTASGKSSVCAKIVQLLGQ   48 (252)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhh
Confidence            889999999999999999997664

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.83  E-value=0.0023  Score=48.57  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+||||+++.+.+..
T Consensus         9 i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            9 VVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998764

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.82  E-value=0.00066  Score=54.52  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.|++||||||+++.|+. +.
T Consensus         7 I~i~G~~GSGKST~~~~L~~-lg   28 (218)
T 1vht_A            7 VALTGGIGSGKSTVANAFAD-LG   28 (218)
T ss_dssp             EEEECCTTSCHHHHHHHHHH-TT
T ss_pred             EEEECCCCCCHHHHHHHHHH-cC
Confidence            88999999999999999988 44

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.82  E-value=0.00065  Score=54.15  Aligned_cols=24  Identities=38%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      .+|+||||+||||++.+|.-.+.+
T Consensus        26 ~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            799999999999999999877765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.82  E-value=0.002  Score=49.71  Aligned_cols=22  Identities=14%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         8 i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            8 CVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.81  E-value=0.0019  Score=51.28  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        31 i~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998864

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.81  E-value=0.0013  Score=56.85  Aligned_cols=38  Identities=16%  Similarity=0.236  Sum_probs=29.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh---------CCCEEEEeCCCCCCHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL---------YGPVIILNETDHLTRE   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~---------~~~~i~ide~d~l~~~   75 (287)
                      +.|+||||+||||++..++...         ...+++||--+.+...
T Consensus       125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~  171 (343)
T 1v5w_A          125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD  171 (343)
T ss_dssp             EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHH
Confidence            8999999999999999998863         2238888865544444

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.81  E-value=0.0027  Score=49.35  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+||||+++.+++..
T Consensus        24 i~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           24 LVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.80  E-value=0.00061  Score=53.85  Aligned_cols=21  Identities=29%  Similarity=0.231  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|++||||||+++.|++.
T Consensus        11 I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A           11 IGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             EEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHC
Confidence            899999999999999999997

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.80  E-value=0.0017  Score=51.96  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=17.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+++||-|+||||.+.-++...
T Consensus        31 ~vitG~MgsGKTT~lL~~a~r~   52 (214)
T 2j9r_A           31 EVICGSMFSGKSEELIRRVRRT   52 (214)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHH
Confidence            7899999999999887665443

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=96.78  E-value=0.00059  Score=65.49  Aligned_cols=48  Identities=2%  Similarity=-0.164  Sum_probs=34.4

Q ss_pred             HHHHhhcCCCcccccCccCccH-HHHHHHHHHH-----HHhccChhHHHHHHHHH
Q psy2281         162 CEASKVQQYPFQIDQQIVEPDW-KIYIRDTAKL-----IISEQSPKKLLEVRTRL  210 (287)
Q Consensus       162 l~~~~~~dep~~~~d~~~~~~~-~~~i~~l~~~-----i~~~~~~~~~~~~~~~~  210 (287)
                      .+.++++|||++++|+.....+ ...+..+.+.     ++++|+.+.. .+++++
T Consensus       686 ~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~  739 (800)
T 1wb9_A          686 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKM  739 (800)
T ss_dssp             TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHS
T ss_pred             CCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhh
Confidence            4688899999999887765543 5667777662     7789998654 466654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.77  E-value=0.0038  Score=47.90  Aligned_cols=22  Identities=32%  Similarity=0.671  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        15 i~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           15 LVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998754

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.77  E-value=0.00061  Score=58.42  Aligned_cols=30  Identities=27%  Similarity=0.363  Sum_probs=25.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|.||+|+||||++..|++.+.+.+|-.|
T Consensus        43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs~D   72 (339)
T 3a8t_A           43 LVLMGATGTGKSRLSIDLAAHFPLEVINSD   72 (339)
T ss_dssp             EEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence            899999999999999999998875433333

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.77  E-value=0.0027  Score=48.16  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+||||+++.+.+..
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            6 ILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            8999999999999999998654

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.76  E-value=0.0007  Score=64.61  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=22.4

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      |++  ++|+||||+||||+++++++..
T Consensus       576 g~i--~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HEL--VLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCE--EEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcE--EEEECCCCCChHHHHHHHHhhh
Confidence            566  8999999999999999999864

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.76  E-value=0.0022  Score=49.29  Aligned_cols=22  Identities=14%  Similarity=0.243  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+||||+++.+.+..
T Consensus        11 i~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D           11 CVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.75  E-value=0.012  Score=45.08  Aligned_cols=22  Identities=14%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         9 i~~~G~~~~GKSsli~~l~~~~   30 (181)
T 3t5g_A            9 IAILGYRSVGKSSLTIQFVEGQ   30 (181)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998543

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.75  E-value=0.0016  Score=55.03  Aligned_cols=38  Identities=24%  Similarity=0.255  Sum_probs=27.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTRE   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~   75 (287)
                      +.++|++|+||||++..+++.+...  -+.+.+.|.....
T Consensus       101 i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~  140 (295)
T 1ls1_A          101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA  140 (295)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHh
Confidence            7889999999999999999887522  3444445654433

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.75  E-value=0.0027  Score=48.98  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        21 i~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           21 VIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            8999999999999999998754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.74  E-value=0.00058  Score=59.18  Aligned_cols=40  Identities=23%  Similarity=0.452  Sum_probs=29.5

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLT   73 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~   73 (287)
                      .|+.  ++|+||||+||||++..++....   ..++++|--+...
T Consensus        60 ~G~i--v~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~  102 (349)
T 2zr9_A           60 RGRV--IEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALD  102 (349)
T ss_dssp             TTSE--EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CCeE--EEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcC
Confidence            4444  89999999999999988886542   3478888544343

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.74  E-value=0.0033  Score=48.92  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        25 i~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           25 LLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.74  E-value=0.0032  Score=49.06  Aligned_cols=23  Identities=35%  Similarity=0.678  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus        19 i~v~G~~~~GKSsli~~l~~~~~   41 (196)
T 3tkl_A           19 LLLIGDSGVGKSCLLLRFADDTY   41 (196)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECcCCCCHHHHHHHHHcCCC
Confidence            89999999999999999987543

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.74  E-value=0.00063  Score=51.94  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+++.
T Consensus         6 v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            6 IALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999874

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.73  E-value=0.0028  Score=48.67  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           11 VIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            8999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.72  E-value=0.0011  Score=53.07  Aligned_cols=28  Identities=21%  Similarity=0.420  Sum_probs=23.5

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +..++++++|++|+||||+++.+++...
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~   37 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSV   37 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3445699999999999999999998653

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=96.72  E-value=0.0039  Score=59.77  Aligned_cols=32  Identities=25%  Similarity=0.507  Sum_probs=23.9

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .+...+..|+.  +++.||+|+||||++..++..
T Consensus       101 ~i~~~l~~~~~--vii~gpTGSGKTtllp~ll~~  132 (773)
T 2xau_A          101 EFLKLYQNNQI--MVFVGETGSGKTTQIPQFVLF  132 (773)
T ss_dssp             HHHHHHHHCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            44444566666  999999999999987776543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.72  E-value=0.0031  Score=47.60  Aligned_cols=22  Identities=23%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         6 i~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.72  E-value=0.0037  Score=48.82  Aligned_cols=22  Identities=18%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        26 i~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           26 VCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.71  E-value=0.0036  Score=49.21  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        17 i~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           17 VIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999998754

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.71  E-value=0.0096  Score=48.46  Aligned_cols=37  Identities=30%  Similarity=0.304  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ......+..+.+. ..  +++.||+|+|||.++.+++...
T Consensus        96 ~~Q~~ai~~~~~~-~~--~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A           96 DYQEKALERWLVD-KR--GCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             HHHHHHHHHHTTT-SE--EEEEESSSTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhC-CC--EEEEeCCCCCHHHHHHHHHHHc
Confidence            3445555555543 33  8999999999999987776554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.71  E-value=0.00018  Score=57.25  Aligned_cols=22  Identities=32%  Similarity=0.474  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++++++..
T Consensus        29 v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           29 VAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             EEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999998755

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.71  E-value=0.0016  Score=49.36  Aligned_cols=21  Identities=24%  Similarity=0.341  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+.+.
T Consensus         5 i~~vG~~~~GKSsli~~l~~~   25 (166)
T 3q72_A            5 VLLLGAPGVGKSALARIFGGV   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHcCc
Confidence            899999999999999998653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.71  E-value=0.0021  Score=48.81  Aligned_cols=20  Identities=30%  Similarity=0.393  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      +++.|++|+|||||++.+++
T Consensus         5 i~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            5 VMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            79999999999999999964

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.71  E-value=0.0035  Score=49.32  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           11 ILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.70  E-value=0.0033  Score=49.03  Aligned_cols=23  Identities=22%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+++...
T Consensus        28 i~v~G~~~~GKSsLi~~l~~~~~   50 (193)
T 2oil_A           28 VVLIGESGVGKTNLLSRFTRNEF   50 (193)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            89999999999999999987543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.70  E-value=0.0096  Score=45.06  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        10 i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A           10 ILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.69  E-value=0.00057  Score=58.49  Aligned_cols=24  Identities=38%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      |-++|+|++|+||||+++.+++..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            348999999999999999999875

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.69  E-value=0.0018  Score=67.41  Aligned_cols=25  Identities=28%  Similarity=0.606  Sum_probs=21.0

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .|+.  ++|+||||||||||+.+++..
T Consensus      1426 ~g~~--vll~GppGtGKT~LA~ala~e 1450 (2050)
T 3cmu_A         1426 MGRI--VEIYGPESSGKTTLTLQVIAA 1450 (2050)
T ss_dssp             TTSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeE--EEEECCCCCCHHHHHHHHHHH
Confidence            4444  999999999999999888655

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.67  E-value=0.00093  Score=56.44  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|.|+|||||||+++.|+...
T Consensus         5 I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            5 ILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999999864

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.67  E-value=0.003  Score=48.84  Aligned_cols=23  Identities=22%  Similarity=0.553  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus        13 i~v~G~~~~GKSsli~~l~~~~~   35 (186)
T 2bme_A           13 FLVIGNAGTGKSCLLHQFIEKKF   35 (186)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            89999999999999999987643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.66  E-value=0.0043  Score=50.41  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.1

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      .++|.|++|+|||||++++++...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc
Confidence            389999999999999999987543

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.65  E-value=0.0042  Score=47.64  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus        13 i~v~G~~~~GKssli~~l~~~~~   35 (180)
T 2g6b_A           13 VMLVGDSGVGKTCLLVRFKDGAF   35 (180)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECcCCCCHHHHHHHHHhCCC
Confidence            89999999999999999987654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.65  E-value=0.0068  Score=53.95  Aligned_cols=23  Identities=35%  Similarity=0.547  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.||+|+||||++..|+..+.
T Consensus       103 IlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A          103 LLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHHH
Confidence            88999999999999999987664

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.65  E-value=0.0046  Score=47.74  Aligned_cols=23  Identities=26%  Similarity=0.599  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus         7 i~v~G~~~~GKSsli~~l~~~~~   29 (189)
T 4dsu_A            7 LVVVGADGVGKSALTIQLIQNHF   29 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCCC
Confidence            89999999999999999987643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.64  E-value=0.0041  Score=48.39  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        18 i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           18 ILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.63  E-value=0.00061  Score=62.45  Aligned_cols=30  Identities=17%  Similarity=0.301  Sum_probs=25.7

Q ss_pred             HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          29 LLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        29 ~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      -+.+|+.  ++|.||||+|||||++.+++...
T Consensus       277 ~i~~G~i--~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          277 GFFKDSI--ILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             SEESSCE--EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCcE--EEEEeCCCCCHHHHHHHHHHHHH
Confidence            3466777  99999999999999999998764

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=96.62  E-value=0.023  Score=45.21  Aligned_cols=19  Identities=26%  Similarity=0.329  Sum_probs=15.5

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~   56 (287)
                      +++.+|.|+|||..+-..+
T Consensus        54 ~li~~~TGsGKT~~~~~~~   72 (220)
T 1t6n_A           54 VLCQAKSGMGKTAVFVLAT   72 (220)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCchhhhhhHHH
Confidence            9999999999998654433

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.61  E-value=0.00059  Score=57.92  Aligned_cols=21  Identities=43%  Similarity=0.578  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.||||+|||||+++|++.
T Consensus        21 I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            799999999999999998875

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.61  E-value=0.00072  Score=52.64  Aligned_cols=21  Identities=38%  Similarity=0.687  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+++.
T Consensus         5 v~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999999873

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.61  E-value=0.012  Score=44.13  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~~   25 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGEI   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHHcCCc
Confidence            78999999999999999987543

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.60  E-value=0.0011  Score=57.60  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+|+||||+||||++.++....
T Consensus        29 ~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           29 TGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHhc
Confidence            8999999999999999998754

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.57  E-value=0.0011  Score=49.82  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +.+++.|++|+||||+++.+++..
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            348999999999999999998754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.56  E-value=0.0013  Score=56.99  Aligned_cols=22  Identities=45%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +.|.|+||+|||||++++++..
T Consensus        77 v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           77 VGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            8999999999999999999865

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.56  E-value=0.009  Score=46.38  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+++...
T Consensus        25 i~v~G~~~~GKSsli~~l~~~~~   47 (188)
T 1zd9_A           25 LTLVGLQYSGKTTFVNVIASGQF   47 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            89999999999999999987543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.56  E-value=0.0052  Score=48.46  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           11 LLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.55  E-value=0.0052  Score=47.84  Aligned_cols=22  Identities=18%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        24 i~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           24 YIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.55  E-value=0.0011  Score=51.49  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+++.
T Consensus        10 i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A           10 IALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEECSTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999874

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.54  E-value=0.0041  Score=48.51  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+||||+++.+.+..
T Consensus        21 i~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           21 CVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.53  E-value=0.0014  Score=56.63  Aligned_cols=63  Identities=11%  Similarity=0.020  Sum_probs=44.3

Q ss_pred             HHHHcCCcHHH-----HHHH------HHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHH
Q psy2281         147 LAQQSDRNLRR-----AILM------CEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRL  210 (287)
Q Consensus       147 l~~~s~G~~r~-----al~~------l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~  210 (287)
                      +..+|+|+.++     .+..      .|.++++|||++++|+.....+.+.+.++.+.    ++++|+.. +...++++
T Consensus       246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d~~  323 (339)
T 3qkt_A          246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAADHV  323 (339)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCSEE
T ss_pred             hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCCEE
Confidence            35688998775     1222      36788899999999988887777777776543    67899854 44555543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.53  E-value=0.0053  Score=47.29  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        21 i~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           21 LVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7999999999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.52  E-value=0.0036  Score=49.68  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        12 i~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           12 CVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.52  E-value=0.00091  Score=59.33  Aligned_cols=23  Identities=39%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|+||||+|||||++++++...
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCC
Confidence            79999999999999999998754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.52  E-value=0.00086  Score=57.95  Aligned_cols=23  Identities=39%  Similarity=0.335  Sum_probs=21.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.+.|+||+||||+++.+++.+.
T Consensus        59 i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           59 LGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999998763

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.51  E-value=0.0041  Score=48.98  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        11 i~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A           11 VIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHHcCC
Confidence            8999999999999999998764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.51  E-value=0.0028  Score=50.53  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+.+.
T Consensus        37 i~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           37 VVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            899999999999999999854

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.50  E-value=0.0038  Score=49.14  Aligned_cols=22  Identities=23%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        28 i~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           28 LVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            8999999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.49  E-value=0.0038  Score=49.06  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        31 i~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           31 IVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHHhCC
Confidence            8999999999999999998654

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.49  E-value=0.0054  Score=47.00  Aligned_cols=22  Identities=27%  Similarity=0.324  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        10 i~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A           10 LGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEECCGGGCHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999998754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.49  E-value=0.00087  Score=52.94  Aligned_cols=23  Identities=30%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.||+|+||||++..++....
T Consensus        37 ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           37 VLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             EEEECCCTTTTHHHHHHHHTTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            89999999999999999988654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.49  E-value=0.0034  Score=48.42  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=8.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        11 i~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           11 LLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEECCCCC-------------
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999987654

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.49  E-value=0.0045  Score=48.97  Aligned_cols=23  Identities=22%  Similarity=0.550  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+++...
T Consensus        29 i~lvG~~~vGKSsLi~~l~~~~~   51 (201)
T 2ew1_A           29 IVLIGNAGVGKTCLVRRFTQGLF   51 (201)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSC
T ss_pred             EEEECcCCCCHHHHHHHHHhCCC
Confidence            89999999999999999987543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.48  E-value=0.0035  Score=49.21  Aligned_cols=22  Identities=14%  Similarity=0.280  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        23 i~~~G~~~~GKssl~~~l~~~~   44 (201)
T 2q3h_A           23 CVLVGDGAVGKTSLVVSYTTNG   44 (201)
T ss_dssp             EEEECSTTSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999997543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.47  E-value=0.0039  Score=49.37  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        28 i~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           28 LVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0017  Score=50.61  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.8

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .++++|++|+||||+++.+++..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            38999999999999999998854

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.46  E-value=0.0035  Score=55.64  Aligned_cols=38  Identities=24%  Similarity=0.322  Sum_probs=28.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC---EEEEeCCCCCCHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP---VIILNETDHLTREA   76 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~ide~d~l~~~~   76 (287)
                      +++.||+|+||||++..+++.+...   +.++| +|...+.+
T Consensus       101 i~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd-~D~~r~aa  141 (425)
T 2ffh_A          101 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA-ADTQRPAA  141 (425)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE-CCSSCHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee-ccccCchh
Confidence            7889999999999999999887543   54444 57555444

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.46  E-value=0.002  Score=57.24  Aligned_cols=39  Identities=23%  Similarity=0.220  Sum_probs=27.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC---EEEEeCCCCCCHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP---VIILNETDHLTREAQ   77 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~ide~d~l~~~~~   77 (287)
                      +++.||+|+||||++..|+..+...   +++++ +|.....+.
T Consensus       100 I~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~-~D~~r~~a~  141 (433)
T 3kl4_A          100 IMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA-ADVYRPAAY  141 (433)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE-ECCSCHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe-cCccchhHH
Confidence            7899999999999999999876422   55544 344444433

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.46  E-value=0.0012  Score=50.89  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus         7 i~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            7 VVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999999753

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.46  E-value=0.003  Score=49.35  Aligned_cols=22  Identities=18%  Similarity=0.457  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        29 i~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           29 VIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999997543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.46  E-value=0.0061  Score=48.21  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++++|++|+|||||++.+++.-
T Consensus        23 i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           23 ILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999998654

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.46  E-value=0.0015  Score=52.47  Aligned_cols=46  Identities=28%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC---CEEEEeCCCCCCHHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG---PVIILNETDHLTREAQQALRRTME   85 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~ide~d~l~~~~~~~l~~~i~   85 (287)
                      ++|.|++|+||||+++.++..+..   .++...+.. -++ .-..++..+.
T Consensus         9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~-~~~-~g~~i~~~l~   57 (213)
T 4edh_A            9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG-GTP-LAERIRELLL   57 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC-SSH-HHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC-CCH-HHHHHHHHHh
Confidence            889999999999999999988753   266666653 222 2234455544

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.45  E-value=0.017  Score=44.64  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHH
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .+++.|++|+|||||++.+.+.
T Consensus        18 ~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           18 KVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999853

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.44  E-value=0.006  Score=47.45  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        24 i~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           24 LAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCcHHHHHHHHHhCC
Confidence            8999999999999999998754

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.43  E-value=0.0023  Score=51.23  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +.|.|++||||||+++.++..+..
T Consensus         6 i~i~G~~gsGkst~~~~l~~~~g~   29 (219)
T 2h92_A            6 IALDGPAAAGKSTIAKRVASELSM   29 (219)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCC
Confidence            899999999999999999998763

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=96.43  E-value=0.0038  Score=49.94  Aligned_cols=21  Identities=38%  Similarity=0.567  Sum_probs=18.3

Q ss_pred             EEEeCCCCCcHHHHHHH-HHHH
Q psy2281          38 LLFYGPSGAGKKTRIMA-LLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~-l~~~   58 (287)
                      +++.|++|+|||||++. +.+.
T Consensus        18 i~v~G~~~~GKSsli~~~~~~~   39 (221)
T 3gj0_A           18 LVLVGDGGTGKTTFVKRHLTGE   39 (221)
T ss_dssp             EEEEECTTSSHHHHHTTBHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            89999999999999998 4444

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.0065  Score=48.68  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        16 i~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           16 IVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEECcCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.43  E-value=0.0013  Score=53.33  Aligned_cols=36  Identities=33%  Similarity=0.546  Sum_probs=25.1

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC-------CCEEEEeCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY-------GPVIILNET   69 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~-------~~~i~ide~   69 (287)
                      +|.+  ++|.||+|+||||+++.++..+.       .++++..+.
T Consensus        24 ~g~~--I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep   66 (227)
T 3v9p_A           24 RGKF--ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREP   66 (227)
T ss_dssp             CCCE--EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESS
T ss_pred             CCeE--EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCC
Confidence            4555  89999999999999999988763       235666665

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.42  E-value=0.0019  Score=56.67  Aligned_cols=30  Identities=27%  Similarity=0.483  Sum_probs=24.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|.||+|+||||++..|+..+.+.+|-.|
T Consensus         5 i~i~GptgsGKttla~~La~~~~~~iis~D   34 (409)
T 3eph_A            5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSD   34 (409)
T ss_dssp             EEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred             EEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence            789999999999999999998875444333

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.41  E-value=0.0024  Score=51.76  Aligned_cols=25  Identities=32%  Similarity=0.490  Sum_probs=22.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      +.|.|||||||||.++.|+..+...
T Consensus        11 ~~~~G~pGsGKsT~a~~L~~~~g~~   35 (230)
T 3gmt_A           11 LILLGAPGAGKGTQANFIKEKFGIP   35 (230)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred             eeeECCCCCCHHHHHHHHHHHhCCC
Confidence            7899999999999999999988643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.41  E-value=0.016  Score=45.33  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+.+.
T Consensus        23 i~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           23 ILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             EEEEESTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            999999999999999988764

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.40  E-value=0.0082  Score=50.96  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=27.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh-----CCCEEEEeCCCCCCH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL-----YGPVIILNETDHLTR   74 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~-----~~~~i~ide~d~l~~   74 (287)
                      +.++||||+|||||+..++...     ...++++|.-+.+..
T Consensus        31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~   72 (333)
T 3io5_A           31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP   72 (333)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence            7899999999999976655443     233889997766654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.40  E-value=0.0052  Score=48.43  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        32 i~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCCCHHHHHHHHhhCC
Confidence            8999999999999999998654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.39  E-value=0.00086  Score=56.58  Aligned_cols=23  Identities=26%  Similarity=0.271  Sum_probs=18.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.|.||+||||||+++.|+..+.
T Consensus         8 IgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            8 ISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             EEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            88999999999999999998654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.38  E-value=0.0015  Score=54.76  Aligned_cols=22  Identities=36%  Similarity=0.354  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.|++||||||+++.|+. +.
T Consensus        78 I~I~G~~GSGKSTva~~La~-lg   99 (281)
T 2f6r_A           78 LGLTGISGSGKSSVAQRLKN-LG   99 (281)
T ss_dssp             EEEEECTTSCHHHHHHHHHH-HT
T ss_pred             EEEECCCCCCHHHHHHHHHH-CC
Confidence            78999999999999999994 44

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.37  E-value=0.005  Score=47.88  Aligned_cols=44  Identities=20%  Similarity=0.336  Sum_probs=28.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRR   82 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~~~~~~l~~   82 (287)
                      ++++|++||||||++..++.. ..++++++=......+-+..+.+
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~   45 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQH   45 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHH
Confidence            689999999999999999876 55578887544333333333333

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.35  E-value=0.0015  Score=50.23  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|+||+||||++..+...
T Consensus        19 vli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           19 VLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHc
Confidence            899999999999999998873

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.35  E-value=0.002  Score=52.59  Aligned_cols=35  Identities=29%  Similarity=0.452  Sum_probs=27.0

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhCC---C-EEEEeCC
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELYG---P-VIILNET   69 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~-~i~ide~   69 (287)
                      |.+  ++|.|++|+||||+++.++..+..   . +++..+.
T Consensus        27 ~~~--i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep   65 (236)
T 3lv8_A           27 AKF--IVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP   65 (236)
T ss_dssp             CCE--EEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CeE--EEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence            444  899999999999999999887642   2 5556654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.33  E-value=0.0017  Score=56.30  Aligned_cols=36  Identities=19%  Similarity=0.417  Sum_probs=27.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLT   73 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~   73 (287)
                      ++|+||||+||||++..++....   ..++++|--+...
T Consensus        66 i~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~  104 (356)
T 1u94_A           66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD  104 (356)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            89999999999999988886642   3488888644443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.32  E-value=0.0095  Score=45.87  Aligned_cols=22  Identities=23%  Similarity=0.321  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        24 i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           24 VIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             EEEEEETTSSHHHHHHHHHTTS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998653

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=96.32  E-value=0.0082  Score=48.05  Aligned_cols=18  Identities=39%  Similarity=0.486  Sum_probs=15.1

Q ss_pred             cCCCCcEEEeCCCCCcHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTR   51 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl   51 (287)
                      +|..  +++.+|.|+|||..
T Consensus        50 ~~~~--~lv~~pTGsGKT~~   67 (224)
T 1qde_A           50 EGHD--VLAQAQSGTGKTGT   67 (224)
T ss_dssp             TTCC--EEEECCTTSSHHHH
T ss_pred             cCCC--EEEECCCCCcHHHH
Confidence            4544  99999999999977

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.32  E-value=0.0022  Score=51.51  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=27.7

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhCC----CEEEEeCCC
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELYG----PVIILNETD   70 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~----~~i~ide~d   70 (287)
                      |.+  +.|.|++|+||||.++.++..+..    .+++..|..
T Consensus         3 g~~--i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~   42 (213)
T 4tmk_A            3 SKY--IVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPG   42 (213)
T ss_dssp             CCE--EEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CeE--EEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCC
Confidence            455  899999999999999999887632    356666643

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.32  E-value=0.0023  Score=51.49  Aligned_cols=51  Identities=24%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQQALRRTME   85 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d~l~~~~~~~l~~~i~   85 (287)
                      +|.+  ++|.|++|+||||.++.++..+...+.++.+...-++ .-..++..+.
T Consensus         4 ~g~~--i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~-~g~~ir~~l~   54 (216)
T 3tmk_A            4 RGKL--ILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTR-IGGLINEYLT   54 (216)
T ss_dssp             CCCE--EEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSH-HHHHHHHHHH
T ss_pred             CCeE--EEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCCh-HHHHHHHHHH
Confidence            3555  8999999999999999999998765566666532222 2234455554

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.30  E-value=0.0018  Score=56.91  Aligned_cols=21  Identities=29%  Similarity=0.241  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +.|.|+||+|||||+++|++.
T Consensus        23 vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           23 TGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             EEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999993

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.29  E-value=0.012  Score=45.35  Aligned_cols=23  Identities=35%  Similarity=0.382  Sum_probs=20.2

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+++.|++|+||||+++.+.+..
T Consensus        20 ~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           20 RLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            38999999999999999998643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.28  E-value=0.0018  Score=49.38  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         7 i~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            7 VVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEECCCCccHHHHHHHHhcCC
Confidence            8999999999999999997643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.27  E-value=0.0027  Score=48.63  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.4

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+++.|++|+||||+++.+.+..
T Consensus        10 ~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A           10 VVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             EEEEESCTTTTHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            48999999999999999998643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.26  E-value=0.0054  Score=48.28  Aligned_cols=21  Identities=24%  Similarity=0.574  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+.+.
T Consensus        28 i~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           28 FLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEECcCCCCHHHHHHHHHhC
Confidence            899999999999999999754

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.24  E-value=0.0044  Score=52.91  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|+||||+|||+++..++..
T Consensus       101 ~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A          101 TEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            899999999999999998875

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.24  E-value=0.0018  Score=53.91  Aligned_cols=23  Identities=26%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .++|.|++|+|||||++++++..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38999999999999999998764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.23  E-value=0.0023  Score=48.62  Aligned_cols=21  Identities=24%  Similarity=0.643  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+.+.
T Consensus         6 i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            6 VAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            899999999999999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.22  E-value=0.0033  Score=56.49  Aligned_cols=35  Identities=14%  Similarity=0.331  Sum_probs=26.9

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhC---C-CEEEEe
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELY---G-PVIILN   67 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~-~~i~id   67 (287)
                      ..|+.  +++.|+||+||||++..++....   + +++++.
T Consensus       201 ~~G~l--iiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s  239 (454)
T 2r6a_A          201 QRSDL--IIVAARPSVGKTAFALNIAQNVATKTNENVAIFS  239 (454)
T ss_dssp             CTTCE--EEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CCCCE--EEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            44555  99999999999999999887653   2 366665

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.21  E-value=0.009  Score=51.79  Aligned_cols=27  Identities=37%  Similarity=0.411  Sum_probs=22.5

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +..+.++|+|++|+||||++..++..+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            333348999999999999999998876

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.21  E-value=0.0035  Score=53.20  Aligned_cols=24  Identities=38%  Similarity=0.547  Sum_probs=21.3

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      |..  ++|.|+||+||||++..+.+.
T Consensus       144 g~~--vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          144 GVG--VLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TEE--EEEEESTTSSHHHHHHHHHHT
T ss_pred             CEE--EEEEeCCCCCHHHHHHHHHhc
Confidence            555  999999999999999999874

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=96.20  E-value=0.0034  Score=58.37  Aligned_cols=30  Identities=43%  Similarity=0.442  Sum_probs=26.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh---CCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL---YGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~id   67 (287)
                      ++|.|++||||||+++.|+..+   ....+.+|
T Consensus        55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD   87 (630)
T 1x6v_B           55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   87 (630)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            8999999999999999999988   54566775

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.20  E-value=0.0044  Score=57.05  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             cCcHHHHHHHHHHHhcC---CCCcEEEeCCCCCcHHHHHHHHHH
Q psy2281          17 DFHCKQANHLRNLLKEG---DFPHLLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g---~~~~~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      +|....++.+...+..+   ....+.|+|+.|+|||||++.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            48888888887777443   222388999999999999999996

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=96.18  E-value=0.011  Score=46.67  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=17.9

Q ss_pred             cCCCCcEEEeCCCCCcHHHHH-HHHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRI-MALLKE   58 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~-~~l~~~   58 (287)
                      +|+.  +++.+|+|+|||..+ ..+...
T Consensus        37 ~~~~--~li~~~TGsGKT~~~~~~~~~~   62 (207)
T 2gxq_A           37 EGKD--LIGQARTGTGKTLAFALPIAER   62 (207)
T ss_dssp             TTCC--EEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCC--EEEECCCCChHHHHHHHHHHHH
Confidence            4544  999999999999873 333343

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.17  E-value=0.0023  Score=49.98  Aligned_cols=24  Identities=29%  Similarity=0.541  Sum_probs=20.9

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          35 FPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        35 ~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .+.+++.|++|+||||+++.+.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            344999999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.17  E-value=0.003  Score=49.01  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        14 i~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           14 FLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999998754

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.15  E-value=0.0045  Score=56.19  Aligned_cols=31  Identities=13%  Similarity=0.169  Sum_probs=26.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC-----CEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG-----PVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~-----~~i~ide   68 (287)
                      ++|.|.+||||||++++|+..+..     .+-++|.
T Consensus       398 I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDg  433 (511)
T 1g8f_A          398 IVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH  433 (511)
T ss_dssp             EEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred             EEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecC
Confidence            899999999999999999999874     1456664

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.14  E-value=0.0032  Score=49.24  Aligned_cols=22  Identities=27%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        10 i~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A           10 TVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            8999999999999999999864

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=96.13  E-value=0.0043  Score=56.31  Aligned_cols=24  Identities=33%  Similarity=0.685  Sum_probs=21.6

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          35 FPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        35 ~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .||+++.|++|+||||+++++...
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~li~s  190 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAMILS  190 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.13  E-value=0.0029  Score=48.52  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        12 i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A           12 LVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            8999999999999999998863

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.13  E-value=0.0029  Score=51.11  Aligned_cols=33  Identities=27%  Similarity=0.366  Sum_probs=26.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC----CEEE-EeCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG----PVII-LNETD   70 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~----~~i~-ide~d   70 (287)
                      +.|.|++|+||||+++.++..+..    ++++ ..|-.
T Consensus        24 i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~   61 (223)
T 3ld9_A           24 ITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG   61 (223)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence            889999999999999999987754    3444 55544

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.11  E-value=0.0023  Score=52.18  Aligned_cols=24  Identities=29%  Similarity=0.228  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|+.||||||+++.|+..+.+
T Consensus         5 i~~~G~~g~GKtt~~~~l~~~l~~   28 (241)
T 2ocp_A            5 LSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHcCC
Confidence            889999999999999999998754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.11  E-value=0.0027  Score=49.35  Aligned_cols=24  Identities=29%  Similarity=0.432  Sum_probs=21.1

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +.+++.|++|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            349999999999999999998764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.10  E-value=0.0024  Score=52.76  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=20.9

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      |.+++.|++|+|||||++++.+.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~   24 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNA   24 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            45899999999999999999876

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.09  E-value=0.003  Score=48.37  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         9 i~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            9 IVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEECcCCCCHHHHHHHHHhCc
Confidence            8999999999999999998643

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.09  E-value=0.0026  Score=53.86  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|.|+||+|||||++++++..
T Consensus        11 VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A           11 IAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEECSSSSSHHHHHHHHHTCS
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            8999999999999999998763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.08  E-value=0.003  Score=48.27  Aligned_cols=22  Identities=27%  Similarity=0.529  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        17 i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           17 LVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            8999999999999999998654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.05  E-value=0.0032  Score=49.22  Aligned_cols=22  Identities=41%  Similarity=0.600  Sum_probs=20.1

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHH
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .+++.|++|+||||+++.+++.
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3899999999999999999874

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.05  E-value=0.0038  Score=48.53  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus        23 i~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           23 VGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEECCTTSCHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999888754

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=96.05  E-value=0.012  Score=47.29  Aligned_cols=22  Identities=27%  Similarity=0.529  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||+|++.+....
T Consensus        16 ivlvGd~~VGKTsLi~r~~~~~   37 (216)
T 4dkx_A           16 LVFLGEQSVGKTSLITRFMYDS   37 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECcCCcCHHHHHHHHHhCC
Confidence            8999999999999999987654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.02  E-value=0.0038  Score=52.74  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=27.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCCHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLTRE   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~~~   75 (287)
                      +++.|++|+||||++..++..+.   ..++++| .|.....
T Consensus       101 i~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~-~D~~r~~  140 (297)
T 1j8m_F          101 IMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG-ADVYRPA  140 (297)
T ss_dssp             EEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE-CCCSSSH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe-cCCCCHH
Confidence            78899999999999999998774   2355555 4543333

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.99  E-value=0.0033  Score=51.20  Aligned_cols=24  Identities=33%  Similarity=0.526  Sum_probs=19.5

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      .|..  +++.|+||+|||+++.-++.
T Consensus        29 ~G~l--~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTT--VLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCE--EEEECCTTSSHHHHHHHHHH
T ss_pred             CCeE--EEEEeCCCCCHHHHHHHHHH
Confidence            4455  89999999999999876653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.98  E-value=0.0034  Score=50.05  Aligned_cols=21  Identities=33%  Similarity=0.523  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+++.
T Consensus        14 i~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           14 ICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999998753

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.96  E-value=0.0066  Score=56.11  Aligned_cols=30  Identities=27%  Similarity=0.278  Sum_probs=25.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC----CCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY----GPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~----~~~i~id   67 (287)
                      ++|.|++||||||++++|+..+.    ...+++|
T Consensus       399 I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD  432 (573)
T 1m8p_A          399 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLL  432 (573)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             EEeecCCCCCHHHHHHHHHHHhcccCCceEEEEC
Confidence            78999999999999999999875    3356666

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=95.95  E-value=5e-05  Score=57.47  Aligned_cols=64  Identities=9%  Similarity=-0.027  Sum_probs=45.5

Q ss_pred             HHHHcCCcHHHH-----------HHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHH
Q psy2281         147 LAQQSDRNLRRA-----------ILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLY  211 (287)
Q Consensus       147 l~~~s~G~~r~a-----------l~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~  211 (287)
                      +.++|+|+.+++           +...+.++++|||++++|......+.+.+.++.+.    ++++|+. .+...+++++
T Consensus        55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~~~~~~d~ii  133 (148)
T 1f2t_B           55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-ELKDAADHVI  133 (148)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-GGGGGCSEEE
T ss_pred             hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-HHHHhCCEEE
Confidence            456788877773           22236788899999999988888888888777543    6789987 4555555443

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=95.93  E-value=0.025  Score=52.32  Aligned_cols=37  Identities=16%  Similarity=0.170  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .++..+...+.+|. .++++.+|.|+|||..+-.++..
T Consensus       185 ~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~  221 (590)
T 3h1t_A          185 IAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWK  221 (590)
T ss_dssp             HHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHH
Confidence            33444433344443 23899999999999987665543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.91  E-value=0.0028  Score=49.10  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+++.|++|+||||+++.+++..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            48999999999999999998753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.90  E-value=0.0047  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.685  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus        17 i~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           17 IVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEECSTTSSHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHhhc
Confidence            8999999999999999887754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.89  E-value=0.0035  Score=52.30  Aligned_cols=21  Identities=14%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|+||+|||||++.+++.
T Consensus         6 I~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            6 IALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	287
d1sxje1	99	a.80.1.1 (E:256-354) Replication factor C5 {Baker'	6e-37
d1iqpa2	231	c.37.1.20 (A:2-232) Replication factor C {Archaeon	4e-25
d1sxjb2	224	c.37.1.20 (B:7-230) Replication factor C4 {Baker's	1e-19
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	2e-19
d1sxjc2	227	c.37.1.20 (C:12-238) Replication factor C3 {Baker'	4e-17
d1njfa_	239	c.37.1.20 (A:) delta prime subunit of DNA polymera	6e-17
d2gnoa2	198	c.37.1.20 (A:11-208) gamma subunit of DNA polymera	2e-14
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	1e-11
d1sxje2	252	c.37.1.20 (E:4-255) Replication factor C5 {Baker's	7e-06
d1sxja2	253	c.37.1.20 (A:295-547) Replication factor C1 {Baker	4e-11
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	4e-10
d1iqpa1	95	a.80.1.1 (A:233-327) Replication factor C {Archaeo	2e-09
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	3e-06
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	8e-06
d1a5ta2	207	c.37.1.20 (A:1-207) delta prime subunit of DNA pol	4e-04
d1fnna2	276	c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob	0.002

>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (314), Expect = 6e-37
 Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 2/95 (2%)

Query: 180 EPDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDS 237
           +PDW I I    + I+ E+S   L+E R  LY+LL H IP N++ K L   LL     ++
Sbjct: 1   KPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNT 60

Query: 238 DLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFM 272
             KS  IE +++F+ R+  G+K IFH+E ++A  M
Sbjct: 61  TNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 95

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 98.1 bits (243), Expect = 4e-25
 Identities = 65/200 (32%), Positives = 92/200 (46%), Gaps = 39/200 (19%)

Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--- 60
           WV+KYRP  L  +         L++ +K G  PHLLF GP G GK T  +AL +EL+   
Sbjct: 14  WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN 73

Query: 61  ------------------------------------GPVIILNETDHLTREAQQALRRTM 84
                                                 +I L+E D LT++AQQALRRTM
Sbjct: 74  WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM 133

Query: 85  EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
           E + +  R IL  N  S++I  I+SRC   R      E+I   L  I + EGL +  E  
Sbjct: 134 EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGL 193

Query: 145 LRLAQQSDRNLRRAILMCEA 164
             +   ++ ++RRAI + +A
Sbjct: 194 QAILYIAEGDMRRAINILQA 213

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 83.5 bits (205), Expect = 1e-19
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 40/202 (19%)

Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
           WV+KYRP  L  +  + +  + L+ + K+G+ PH++  G  G GK T +  L  EL G  
Sbjct: 5   WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS 64

Query: 63  ---------------------------------------VIILNETDHLTREAQQALRRT 83
                                                  ++IL+E D +T  AQQALRRT
Sbjct: 65  YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRT 124

Query: 84  MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF 143
           ME Y  + R     N  +++I  ++S+C  +R    + E+++  L  I K E +    + 
Sbjct: 125 MELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDG 184

Query: 144 ALRLAQQSDRNLRRAILMCEAS 165
              +   ++ ++R+AI   +++
Sbjct: 185 LEAIIFTAEGDMRQAINNLQST 206

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.4 bits (202), Expect = 2e-19
 Identities = 64/229 (27%), Positives = 93/229 (40%), Gaps = 50/229 (21%)

Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
           WV+KYRP NL ++         L+  LK  + PH+LFYGP G GK + I+AL KELYGP 
Sbjct: 2   WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 61

Query: 63  -------------------------------------------------VIILNETDHLT 73
                                                            +IIL+E D +T
Sbjct: 62  LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 121

Query: 74  REAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICK 133
            +AQ ALRRTME Y    R  L  N ++++I  + S+C   R  A      +  L  I +
Sbjct: 122 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISE 181

Query: 134 KEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQQIVEPD 182
           +E +        R+   S  +LRR I + +++          + I    
Sbjct: 182 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQ 230

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.3 bits (186), Expect = 4e-17
 Identities = 59/200 (29%), Positives = 90/200 (45%), Gaps = 39/200 (19%)

Query: 4   WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP- 62
           WV+KYRP  L ++    +    +R  + EG  PHLLFYGP G GK + I+AL +E+YG  
Sbjct: 4   WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 63

Query: 63  --------------------------------------VIILNETDHLTREAQQALRRTM 84
                                                 +IIL+E D +T  AQ ALRR +
Sbjct: 64  YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVI 123

Query: 85  EKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA 144
           E+Y    R  + AN   ++ PA+ S+C   R      E I   + N+   E L + P   
Sbjct: 124 ERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAE 183

Query: 145 LRLAQQSDRNLRRAILMCEA 164
             L + S+ ++RR + + ++
Sbjct: 184 KALIELSNGDMRRVLNVLQS 203

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 75.9 bits (186), Expect = 6e-17
 Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 7/160 (4%)

Query: 11  NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------V 63
           N    +             +++G F  L+    +   K      LL  +          V
Sbjct: 59  NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 118

Query: 64  IILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE 123
            +++E   L+R +  AL +T+E+     + +L      ++   I SRCL   + A   E+
Sbjct: 119 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 178

Query: 124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE 163
           I   L +I  +E +   P     LA+ ++ +LR A+ + +
Sbjct: 179 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTD 218

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 68.2 bits (166), Expect = 2e-14
 Identities = 24/190 (12%), Positives = 62/190 (32%), Gaps = 45/190 (23%)

Query: 22  QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------- 62
           Q   L+ ++++ +   +L  G   +  +   + L + +                      
Sbjct: 2   QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGI 61

Query: 63  --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ 102
                                +I+++ + +T++A  A  + +E+      ++L       
Sbjct: 62  DDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 121

Query: 103 VIPAIRSRCLCIRIPAPTH------EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLR 156
           ++P I+SR   + +  P        E+I  +   +   E        A +L  +    L 
Sbjct: 122 LLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSGLM 181

Query: 157 RAILMCEASK 166
            ++ + E  K
Sbjct: 182 ESLKVLETEK 191

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 1e-11
 Identities = 33/69 (47%), Positives = 45/69 (65%), Gaps = 1/69 (1%)

Query: 4  WVDKYRPNNLQKLDFHCKQANHLRNLLKEG-DFPHLLFYGPSGAGKKTRIMALLKELYGP 62
          WVDKYRP +L  L  + +  N L++L  +  D PHLL YGP+G GKKTR MALL+ ++GP
Sbjct: 1  WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60

Query: 63 VIILNETDH 71
           +   + D 
Sbjct: 61 GVYRLKIDV 69

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 7e-06
 Identities = 48/119 (40%), Positives = 76/119 (63%), Gaps = 2/119 (1%)

Query: 63  VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE 122
            +I+NE + LT++AQ ALRRTMEKY    RLI+  +SMS +I  I+S+CL IR PAP+  
Sbjct: 134 CVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDS 193

Query: 123 EIVSVLTNICKKEGLTIPPEFAL-RLAQQSDRNLRRAILMCEASKVQ-QYPFQIDQQIV 179
           EI ++L+++   E + +  +  L R+AQ S+ NLR ++LM E+  +  +   +    I+
Sbjct: 194 EISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPII 252

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 4e-11
 Identities = 46/253 (18%), Positives = 78/253 (30%), Gaps = 67/253 (26%)

Query: 2   SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------------GDFPHLLFYGPS 44
            LW  KY P NLQ++  +      L+N L                   G F   + YGP 
Sbjct: 2   KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPP 61

Query: 45  GAGKKTRIMALLKELY-------------------------------------------- 60
           G GK T    + +EL                                             
Sbjct: 62  GIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLN 121

Query: 61  --GPVIILNETDHLTREAQQALRRTMEKYITTCRL--ILCANSMSQVIPAIRSRCLCIRI 116
               VII++E D ++   +  + +  +    T     ++C       +      CL I+ 
Sbjct: 122 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQF 181

Query: 117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQIDQ 176
             P    I S L  I  +E   + P    RL Q +  ++R+ I +            I+ 
Sbjct: 182 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKT--INH 239

Query: 177 QIVEPDWKIYIRD 189
           + +    K + ++
Sbjct: 240 ENINEISKAWEKN 252

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 56.9 bits (136), Expect = 4e-10
 Identities = 33/183 (18%), Positives = 60/183 (32%), Gaps = 46/183 (25%)

Query: 28  NLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY--------------------------- 60
              ++    HLL +GP G GK T    +  EL                            
Sbjct: 28  AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEE 87

Query: 61  GPVIILNETDHLTREAQQALRRTMEKYIT----------------TCRLILCANSMS--- 101
           G ++ ++E   L+R+A++ L   ME ++                   R  L   +     
Sbjct: 88  GDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL 147

Query: 102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILM 161
              P +    +   +   T EE+   +    +  G+ I  E AL + ++S   +R A  +
Sbjct: 148 ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRL 207

Query: 162 CEA 164
              
Sbjct: 208 FRR 210

>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 95

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 13/84 (15%), Positives = 33/84 (39%), Gaps = 2/84 (2%)

Query: 194 IISEQSPKKLLEVRTRLYELLV-HSIPVNVLFKYLLEGLL-ANCDSDLKSKSIEMAAMFE 251
           ++        L+ R +L E+L+   +    +   + + +     +   K    +    + 
Sbjct: 10  MMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYN 69

Query: 252 HRIHKGSKPIFHIEAYVASFMAMY 275
            R+ +G+  I  +EA +A F  + 
Sbjct: 70  FRLVEGANEIIQLEALLAQFTLIG 93

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 25/181 (13%), Positives = 51/181 (28%), Gaps = 45/181 (24%)

Query: 28  NLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILN-------------------- 67
             ++     H+L  GP G GK T    +  EL   + + +                    
Sbjct: 28  AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERG 87

Query: 68  ------ETDHLTREAQQALRRTMEKYI-------------------TTCRLILCANSMSQ 102
                 E   L +  ++ L   +E +                        +     S   
Sbjct: 88  DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLL 147

Query: 103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMC 162
             P      + + +   T +E+  ++        + I    A  +A++S    R AI + 
Sbjct: 148 SSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT 207

Query: 163 E 163
           +
Sbjct: 208 K 208

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 44.3 bits (104), Expect = 8e-06
 Identities = 21/160 (13%), Positives = 36/160 (22%), Gaps = 48/160 (30%)

Query: 36  PHLLFYGPSGAGKKTRIMALLKELYGPVI------------------------------- 64
            + LF GP  +GK T   ALL+   G  +                               
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTG 214

Query: 65  ----------ILNETDHLTRE------AQQALRRTMEKYITTCRLILCANS-MSQVIPAI 107
                      +N  D+L              +   ++       I+  N          
Sbjct: 215 GESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQA 274

Query: 108 RSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRL 147
           R        P    +  +     + +K  +       L L
Sbjct: 275 RFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLML 314

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 16/104 (15%), Positives = 24/104 (23%), Gaps = 1/104 (0%)

Query: 19  HCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGPVIILNETDHLTREAQ 77
                  L    + G   H LL     G G    I AL + L       +++    R  Q
Sbjct: 7   LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66

Query: 78  QALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH 121
                T   Y T              +  +  +           
Sbjct: 67  LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAK 110

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 2  SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE------GDFPHLLFYGPSGAGKKTRIMAL 55
          S++   Y P  L   +   +Q   L  LL          +P     G  G GK   +  L
Sbjct: 7  SVFSPSYVPKRLPHRE---QQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKL 63

Query: 56 LKEL 59
           +  
Sbjct: 64 WELY 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	287
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	100.0
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	100.0
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	100.0
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	100.0
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	100.0
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	100.0
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.96
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.93
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.93
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.93
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.88
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.88
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.88
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.87
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.86
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.85
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.85
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.84
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.83
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.8
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.78
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.76
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.69
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.68
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.67
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.66
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.65
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.64
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.63
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.62
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.61
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.6
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.59
d1sxje1	99	Replication factor C5 {Baker's yeast (Saccharomyce	99.58
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.58
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.54
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.51
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.38
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.35
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.31
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.29
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.29
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.23
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.21
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.19
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.18
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.12
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.11
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.92
d1iqpa1	95	Replication factor C {Archaeon Pyrococcus furiosus	98.88
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.87
d1sxjd1	91	Replication factor C2 {Baker's yeast (Saccharomyce	98.87
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.77
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.72
d1sxjb1	92	Replication factor C4 {Baker's yeast (Saccharomyce	98.66
d1sxjc1	95	Replication factor C3 {Baker's yeast (Saccharomyce	98.66
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.6
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	98.45
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.38
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.32
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.32
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.28
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.17
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.11
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.07
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.06
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.04
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.98
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.98
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.97
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.96
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.95
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.95
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.94
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.92
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.91
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.88
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.88
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.88
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.78
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.77
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.77
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.75
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.74
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.69
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.68
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.68
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.67
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.65
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.65
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.64
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.64
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.62
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.6
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.58
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.57
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.57
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.56
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.54
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.54
d1okkd2	207	GTPase domain of the signal recognition particle r	97.52
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.5
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.5
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.49
d3ctda1	163	Uncharacterized protein YrvN {Prochlorococcus mari	97.49
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.47
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.46
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.45
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.44
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.43
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.4
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.39
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.38
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.37
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.35
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.31
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.31
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.27
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.27
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.25
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.22
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.2
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.19
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.16
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.15
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.15
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.14
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.1
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.1
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.09
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.09
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	97.08
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.08
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	97.08
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.06
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.05
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.03
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.03
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.02
d2qw6a1	88	Uncharacterized protein EfaeDRAFT_0938 {Enterococc	97.01
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	97.01
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.01
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.01
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.96
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.93
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.92
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.91
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.9
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.85
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.84
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.84
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.82
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.82
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.8
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.78
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.77
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.74
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.74
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.74
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.74
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.73
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.72
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.71
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.69
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.67
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.66
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.64
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.64
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.63
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.63
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.63
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.62
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.59
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.59
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.57
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.56
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.56
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.55
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.55
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.54
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.52
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.52
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.52
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.52
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.49
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	96.47
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.47
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.44
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.44
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	96.43
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.41
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.37
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.37
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.34
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.34
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.32
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.29
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	96.25
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	96.25
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	96.24
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.22
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.21
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.19
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.13
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.11
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.1
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.09
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.08
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	96.07
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.06
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.05
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.05
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.99
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.97
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.97
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	95.96
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.93
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.92
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.85
d1jr3a1	126	gamma subunit {Escherichia coli [TaxId: 562]}	95.83
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.8
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.79
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	95.74
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.61
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.6
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.6
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.57
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.5
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.49
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	95.48
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.43
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.39
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.38
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.37
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	95.21
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	95.17
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.17
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.1
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	95.02
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.96
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.73
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	94.68
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.65
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.39
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.28
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.23
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.16
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	94.14
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	94.1
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	94.02
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.89
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	93.81
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	93.67
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.62
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	93.54
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	93.34
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.17
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	93.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.07
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.84
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.66
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.63
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	92.52
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.42
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.34
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.3
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.25
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.14
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.03
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.98
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	91.74
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.31
d1jqlb_	140	delta subunit of DNA polymerase III, N-domain {Esc	91.22
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.88
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.84
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	90.42
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	89.86
d1jr3d1	127	delta subunit {Escherichia coli [TaxId: 562]}	89.79
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	89.61
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.74
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.5
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.43
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	87.86
d1z63a1	230	Helicase of the SNF2/Rad54 hamily {Sulfolobus solf	87.4
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	87.07
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	87.03
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	86.8
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.14
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	86.04
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	84.97
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	83.88
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	83.59
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	81.44

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-35  Score=243.34  Aligned_cols=170  Identities=30%  Similarity=0.508  Sum_probs=160.5

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .||+|||||++|++++|++++++.|+.++.++..||++|+||||+||||+++++++.+.+.                   
T Consensus         3 ~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~   82 (224)
T d1sxjb2           3 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDV   82 (224)
T ss_dssp             CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHH
T ss_pred             CchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCcee
Confidence            3899999999999999999999999999999999999999999999999999999887533                   


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCH
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH  121 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~  121 (287)
                                           ++++||+|.++...+..++..++..+.++.++++++..+++.++++|||..++|++++.
T Consensus        83 i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~  162 (224)
T d1sxjb2          83 VRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD  162 (224)
T ss_dssp             HHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCH
T ss_pred             hhhHHHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhhcccch
Confidence                                 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCC
Q psy2281         122 EEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYP  171 (287)
Q Consensus       122 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep  171 (287)
                      +++..++..+++++|+.+++++++.++..|+||+|+|++.++.++...+.
T Consensus       163 ~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~~~~  212 (224)
T d1sxjb2         163 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGL  212 (224)
T ss_dssp             HHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             hhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999987765443

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6e-35  Score=239.67  Aligned_cols=166  Identities=36%  Similarity=0.659  Sum_probs=158.0

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      ||+|||||++|++++|++++++.|+.++..+..||++|+||+|+||||+++++++++.+.                    
T Consensus         3 pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~   82 (227)
T d1sxjc2           3 PWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVV   82 (227)
T ss_dssp             CHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHH
T ss_pred             chhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeee
Confidence            899999999999999999999999999999999999999999999999999999986533                    


Q ss_pred             -------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHH
Q psy2281          63 -------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEE  123 (287)
Q Consensus        63 -------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~  123 (287)
                                         ++++||+|.++...+..|++.++..+.++.++++++...++.++++|||..+.|++++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~  162 (227)
T d1sxjc2          83 RNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEA  162 (227)
T ss_dssp             HTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHH
T ss_pred             ecchhhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhccccccccc
Confidence                               8999999999999999999999999989999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281         124 IVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus       124 ~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      +.+++.+++..+|+.+++++++.+++.|+||+|+|++.++.+...
T Consensus       163 i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~  207 (227)
T d1sxjc2         163 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKAT  207 (227)
T ss_dssp             HHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTT
T ss_pred             cccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999987654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=1.4e-33  Score=232.14  Aligned_cols=171  Identities=39%  Similarity=0.633  Sum_probs=160.6

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      .+|+|||+|++|++++|++++++.|..+++.+..||++|+||||+||||+++++++++.+.                   
T Consensus        12 ~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~~   91 (231)
T d1iqpa2          12 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV   91 (231)
T ss_dssp             SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT
T ss_pred             chHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchhH
Confidence            4899999999999999999999999999999999999999999999999999999986542                   


Q ss_pred             --------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHH
Q psy2281          63 --------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHE  122 (287)
Q Consensus        63 --------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~  122 (287)
                                          ++++||+|.+....+..|+..++....++.++++++....+..+++|||..+.|.+++..
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~  171 (231)
T d1iqpa2          92 IREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDE  171 (231)
T ss_dssp             THHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHH
T ss_pred             HHHHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccccccccccchh
Confidence                                899999999999999999999999888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCc
Q psy2281         123 EIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPF  172 (287)
Q Consensus       123 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~  172 (287)
                      ++..++.++++++++.+++++++.+++.|+||+|+|++.++.+...++.+
T Consensus       172 ~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~~~~i  221 (231)
T d1iqpa2         172 DIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKI  221 (231)
T ss_dssp             HHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEE
T ss_pred             hHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999999999887766543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-34  Score=235.87  Aligned_cols=168  Identities=38%  Similarity=0.641  Sum_probs=157.0

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      ||++||||++|++++|++++++.|+.++..+..||++|+||||+||||+++++++++.+.                    
T Consensus         1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (237)
T d1sxjd2           1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISI   80 (237)
T ss_dssp             CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHH
T ss_pred             CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchH
Confidence            799999999999999999999999999999999999999999999999999999986211                    


Q ss_pred             ------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccc
Q psy2281          63 ------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCL  112 (287)
Q Consensus        63 ------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~  112 (287)
                                                    ++++||+|.++...++.+...++....++.++++++...++.++++|||.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~  160 (237)
T d1sxjd2          81 VREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS  160 (237)
T ss_dssp             HTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred             HHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhh
Confidence                                          79999999999999999999999988888899999999999999999999


Q ss_pred             eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCC
Q psy2281         113 CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQY  170 (287)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~de  170 (287)
                      .++|++++.+++.+++..+++++++.+++++++.+++.|+||+|+|++.++.++...+
T Consensus       161 ~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~~~  218 (237)
T d1sxjd2         161 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ  218 (237)
T ss_dssp             EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHH
T ss_pred             hhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhch
Confidence            9999999999999999999999999999999999999999999999999998765443

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.3e-32  Score=225.81  Aligned_cols=165  Identities=26%  Similarity=0.355  Sum_probs=154.9

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      .++||||++|++++|++++++.|..++.++..|| ++|+||+|+||||+++++++.+.+.                    
T Consensus         2 ~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~   81 (239)
T d1njfa_           2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG   81 (239)
T ss_dssp             HHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHT
T ss_pred             chhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcC
Confidence            4689999999999999999999999999999999 8999999999999999998876321                    


Q ss_pred             ------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHH
Q psy2281          63 ------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPA  106 (287)
Q Consensus        63 ------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~  106 (287)
                                                          +++|||+|.++..+++.|++.|+.++.++.|+++++..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~  161 (239)
T d1njfa_          82 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT  161 (239)
T ss_dssp             CCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred             CCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChh
Confidence                                                89999999999999999999999999999999999999999999


Q ss_pred             HhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281         107 IRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus       107 l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      ++|||..+.|++++.+++.+++.++++.++..+++++++.++..|+||+|+|++.++.+...
T Consensus       162 i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~  223 (239)
T d1njfa_         162 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIAS  223 (239)
T ss_dssp             HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999875543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-32  Score=227.38  Aligned_cols=167  Identities=46%  Similarity=0.817  Sum_probs=153.6

Q ss_pred             cccccCCCCCCCccCcHHHHHHHHHHHhcCC-CCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           4 WVDKYRPNNLQKLDFHCKQANHLRNLLKEGD-FPHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~~~~l~~~~~~g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      |+|||||++|++++|++++...|+.++.++. .|+++|+||+|+||||+++++++.+...                    
T Consensus         1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~   80 (252)
T d1sxje2           1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL   80 (252)
T ss_dssp             CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred             CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchh
Confidence            9999999999999999999999999987665 5569999999999999999999986322                    


Q ss_pred             -----------------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccC
Q psy2281          63 -----------------------------------------------------VIILNETDHLTREAQQALRRTMEKYIT   89 (287)
Q Consensus        63 -----------------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~   89 (287)
                                                                           ++++||+|.++...++.+++.++.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~  160 (252)
T d1sxje2          81 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK  160 (252)
T ss_dssp             --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred             hhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhcccccccc
Confidence                                                                 788999999999999999999999999


Q ss_pred             CcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281          90 TCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIP-PEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus        90 ~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      ++.|+++++..+++.++++|||..++|++++.+++.+++..+++.+++.+. +++++.++..|.||+|+|++.++.+...
T Consensus       161 ~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~  240 (252)
T d1sxje2         161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN  240 (252)
T ss_dssp             TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHT
T ss_pred             cccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999998764 6788999999999999999999998887


Q ss_pred             CC
Q psy2281         169 QY  170 (287)
Q Consensus       169 de  170 (287)
                      ++
T Consensus       241 ~~  242 (252)
T d1sxje2         241 NE  242 (252)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.2e-29  Score=209.42  Aligned_cols=172  Identities=27%  Similarity=0.400  Sum_probs=143.7

Q ss_pred             CccccccCCCCCCCccCcHHHHHHHHHHHhc-----------------CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--
Q psy2281           2 SLWVDKYRPNNLQKLDFHCKQANHLRNLLKE-----------------GDFPHLLFYGPSGAGKKTRIMALLKELYGP--   62 (287)
Q Consensus         2 ~~w~~k~~p~~~~~~~~~~~~~~~l~~~~~~-----------------g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--   62 (287)
                      -+|+|||||++|++++|+++.++.|..++..                 +..++++|+|||||||||+++++|+.+..+  
T Consensus         2 ~lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~   81 (253)
T d1sxja2           2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL   81 (253)
T ss_dssp             CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred             CccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence            3799999999999999999999999888732                 344569999999999999999999987643  


Q ss_pred             --------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhc-cCCcEEEEEe
Q psy2281          63 --------------------------------------------VIILNETDHLTREAQQALRRTMEKY-ITTCRLILCA   97 (287)
Q Consensus        63 --------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~-~~~~~~i~~~   97 (287)
                                                                  ++++||++.++...+..+...++.. .....+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~~~~~~~~~~~~~~~~ii~i~  161 (253)
T d1sxja2          82 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILIC  161 (253)
T ss_dssp             EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEEE
T ss_pred             ccccccchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhhhhHHHhhhhccccccccccc
Confidence                                                        7999999988776666555555543 2234566666


Q ss_pred             CCC-CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhcCCCcc
Q psy2281          98 NSM-SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQQYPFQ  173 (287)
Q Consensus        98 ~~~-~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~dep~~  173 (287)
                      +.. .....++++||..+.|++++.+++..++..+++++|+.+++++++.+++.|+||+|+|++.++.+...++.++
T Consensus       162 ~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~GDiR~ai~~L~~~~~~~~~i~  238 (253)
T d1sxja2         162 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKTIN  238 (253)
T ss_dssp             SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHHHHHSSCCC
T ss_pred             ccccccccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCC
Confidence            554 4467789999999999999999999999999999999999999999999999999999999998887766543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=8.5e-25  Score=179.84  Aligned_cols=160  Identities=21%  Similarity=0.283  Sum_probs=139.9

Q ss_pred             ccCCCCCCCccCcHHHHHHHHHHHh-----cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281           7 KYRPNNLQKLDFHCKQANHLRNLLK-----EGDFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus         7 k~~p~~~~~~~~~~~~~~~l~~~~~-----~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      -.||++|++++|++++++.++.+++     ....||++|+|||||||||+++++++++..+                   
T Consensus         2 ~~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~~~~~~~~   81 (238)
T d1in4a2           2 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL   81 (238)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred             CCCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccHHHHHHHH
Confidence            3699999999999999999988873     2346779999999999999999999998755                   


Q ss_pred             -------EEEEeCCCCCCHHHHHHHHHHHHhc------------------cCCcEEEEEeCCCCCCcHHHhcccc-eeec
Q psy2281          63 -------VIILNETDHLTREAQQALRRTMEKY------------------ITTCRLILCANSMSQVIPAIRSRCL-CIRI  116 (287)
Q Consensus        63 -------~i~ide~d~l~~~~~~~l~~~i~~~------------------~~~~~~i~~~~~~~~l~~~l~sr~~-~~~~  116 (287)
                             ++++||++.+....++.++..++..                  .+.+.+|++++....+.+++++||. .+.|
T Consensus        82 ~~~~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~  161 (238)
T d1in4a2          82 TSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILEL  161 (238)
T ss_dssp             HHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEEC
T ss_pred             HhhccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEEe
Confidence                   8999999999988888887776642                  2345788888888899999999996 5789


Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHh
Q psy2281         117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASK  166 (287)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~  166 (287)
                      +.++.+++..++..++..+++.+++++++.+++.|+||+|.|++.++.+.
T Consensus       162 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai~~l~~~~  211 (238)
T d1in4a2         162 DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVR  211 (238)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=2.6e-24  Score=177.07  Aligned_cols=161  Identities=24%  Similarity=0.330  Sum_probs=137.7

Q ss_pred             cCCCCCCCccCcHHHHHHHHHHHhc-----CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------------
Q psy2281           8 YRPNNLQKLDFHCKQANHLRNLLKE-----GDFPHLLFYGPSGAGKKTRIMALLKELYGP--------------------   62 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~~~~~-----g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------   62 (287)
                      .||++|++++|++++++.|+.++..     ...||++|+||||+||||+++++++++..+                    
T Consensus         3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (239)
T d1ixsb2           3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILA   82 (239)
T ss_dssp             CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred             cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccchhhHHHHH
Confidence            5999999999999999999888742     345679999999999999999999998755                    


Q ss_pred             -------EEEEeCCCCCCHHHHHHHHHHHHhc------------------cCCcEEEEEeCCCCC-CcHHHhcccceeec
Q psy2281          63 -------VIILNETDHLTREAQQALRRTMEKY------------------ITTCRLILCANSMSQ-VIPAIRSRCLCIRI  116 (287)
Q Consensus        63 -------~i~ide~d~l~~~~~~~l~~~i~~~------------------~~~~~~i~~~~~~~~-l~~~l~sr~~~~~~  116 (287)
                             ++++||+|.+....+..++..++..                  .....++++++.... ..+.++++|..+.|
T Consensus        83 ~~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~  162 (239)
T d1ixsb2          83 NSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHL  162 (239)
T ss_dssp             TTCCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEEC
T ss_pred             hhccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEe
Confidence                   8999999999999898888888742                  123456777777655 45567777888999


Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHhhc
Q psy2281         117 PAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEASKVQ  168 (287)
Q Consensus       117 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~~~~  168 (287)
                      ..++.+++..++..++..+++.++++.+..+++.|.||+|.|++.++.+..+
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~~l~~~~~~  214 (239)
T d1ixsb2         163 EYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDF  214 (239)
T ss_dssp             CCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred             eccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999977543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.7e-25  Score=177.99  Aligned_cols=141  Identities=22%  Similarity=0.290  Sum_probs=128.4

Q ss_pred             CcHHHHHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------------------------
Q psy2281          18 FHCKQANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP----------------------------------   62 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------------   62 (287)
                      .+..+.+.|...+..++.|| ++|+||+|+||||+++++++.+.+.                                  
T Consensus         6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   85 (207)
T d1a5ta2           6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK   85 (207)
T ss_dssp             GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred             ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcc
Confidence            45678899999999999999 9999999999999999999977421                                  


Q ss_pred             -------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecC
Q psy2281          63 -------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIP  117 (287)
Q Consensus        63 -------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~  117 (287)
                                               ++++||+|.++.+++++|++.||.++.++.||++++...++.++++|||..++|.
T Consensus        86 ~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~  165 (207)
T d1a5ta2          86 NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA  165 (207)
T ss_dssp             SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred             cccccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecC
Confidence                                     8999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Q psy2281         118 APTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCE  163 (287)
Q Consensus       118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~  163 (287)
                      +++.+++..++.+     ++.++++.+..+++.|+|++|+|++.++
T Consensus       166 ~~~~~~~~~~L~~-----~~~~~~~~~~~i~~~s~Gs~r~al~~le  206 (207)
T d1a5ta2         166 PPPEQYAVTWLSR-----EVTMSQDALLAALRLSAGSPGAALALFQ  206 (207)
T ss_dssp             CCCHHHHHHHHHH-----HCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred             CCCHHHHHHHHHH-----cCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence            9999999888864     3456899999999999999999998764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.8e-25  Score=180.65  Aligned_cols=189  Identities=14%  Similarity=0.162  Sum_probs=119.8

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++.++..+++|++  +.|.||||||||||++++++...++  .|++++.+.-...   ..++.+++++|+..++...++.
T Consensus        16 l~~isl~i~~Gei--~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~---~~~r~ig~v~Q~~~l~~~~tv~   90 (232)
T d2awna2          16 SKDINLDIHEGEF--VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTP---PAERGVGMVFQSYALYPHLSVA   90 (232)
T ss_dssp             EEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSC---GGGTCEEEECSSCCC-------
T ss_pred             EeeeEEEEcCCCE--EEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCc---hhhceeeeeccccccccchhHH
Confidence            3344445578999  9999999999999999999998877  8889987642111   1235689999999888888999


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++..+..       +...+.++..+++.++++..++  ++...+++.++|||+.||     |+...|+++++|||++++
T Consensus        91 eni~~~~~-------~~~~~~~~~~~~v~~~l~~~~l--~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~L  161 (232)
T d2awna2          91 ENMSFGLK-------LAGAKKEVINQRVNQVAEVLQL--AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL  161 (232)
T ss_dssp             ---------------------CHHHHHHHHHHHHC-----------------------CHHHHHHTCCSEEEEESTTTTS
T ss_pred             HHHHHHHH-------HcCCCHHHHHHHHHHHHHhCCC--hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence            99887755       4456677888899999999888  677888999999999998     888889999999999999


Q ss_pred             cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      |+.....+.+.+.++.++     ++++|+.+.+..++|++.-+..+.+    +|+++++
T Consensus       162 D~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  220 (232)
T d2awna2         162 DAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH  220 (232)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence            999999999999999776     8899999999999999875433222    5666543

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.8e-26  Score=186.35  Aligned_cols=178  Identities=12%  Similarity=0.122  Sum_probs=149.4

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      .++..+++|++  +.|.||||||||||++++++...++  .|.+++.+.  ++......+++.+++++|++.++...++.
T Consensus        23 ~vsl~i~~Ge~--~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~  100 (240)
T d3dhwc1          23 NVSLHVPAGQI--YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF  100 (240)
T ss_dssp             EEEEEECSSCE--EEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHH
T ss_pred             ceeEEEcCCCE--EEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccHH
Confidence            34445578999  9999999999999999999998877  788887654  45555667788899999998776666777


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccc
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQID  175 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~  175 (287)
                      +++..+++       ....+.++..+++.+.++..|+  ++....++.++|||+.||     |+...|+++++||||+++
T Consensus       101 eni~~~l~-------~~~~~~~~~~~~v~~~L~~vgL--~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~L  171 (240)
T d3dhwc1         101 GNVALPLE-------LDNTPKDEVKRRVTELLSLVGL--GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSAL  171 (240)
T ss_dssp             HHHHHHHH-------TTTCCTTHHHHHHHHHHHHHST--TTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSS
T ss_pred             HHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--chhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccC
Confidence            88877776       4456778888999999999998  555667788899999988     788889999999999999


Q ss_pred             cCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         176 QQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       176 d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |+.....+.+.+.++.++     ++++|+.+.+..++|+++.+
T Consensus       172 D~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl  214 (240)
T d3dhwc1         172 DPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVI  214 (240)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEE
T ss_pred             CHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEE
Confidence            999999999999999776     78999999999999987644

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=2e-26  Score=186.87  Aligned_cols=195  Identities=15%  Similarity=0.142  Sum_probs=148.7

Q ss_pred             cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE
Q psy2281          17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLI   94 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i   94 (287)
                      +|+..+++.++..+++|++  +.|.||||||||||++++++...++  .|++++.+.-....   .++.+++++|+..++
T Consensus        16 yg~~~al~~vsl~v~~Ge~--~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~---~~r~ig~v~Q~~~l~   90 (239)
T d1v43a3          16 FGNFTAVNKLNLTIKDGEF--LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP---KDRNISMVFQSYAVW   90 (239)
T ss_dssp             ETTEEEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG---GGGTEEEEEC-----
T ss_pred             ECCEEEEcceeEEECCCCE--EEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc---ccceEEEEeechhhc
Confidence            3444444455556688999  9999999999999999999999887  88889866322111   135688899988877


Q ss_pred             EEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcC
Q psy2281          95 LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQ  169 (287)
Q Consensus        95 ~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~d  169 (287)
                      ...++.+++..+.+       ....+.++..+++..+++..++  ++...+++.++|||+.||     |+...|+++++|
T Consensus        91 ~~ltv~enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllD  161 (239)
T d1v43a3          91 PHMTVYENIAFPLK-------IKKFPKDEIDKRVRWAAELLQI--EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD  161 (239)
T ss_dssp             -CCCHHHHHHTTCC---------CCCHHHHHHHHHHHHHHTTC--GGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE
T ss_pred             ccchHHHHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCC--hhhhcCChhhCCHHHHHHHHHHhhhccCCCceeec
Confidence            77777777655443       4467889999999999999988  566677889999999999     777779999999


Q ss_pred             CCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         170 YPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       170 ep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      |||+++|+.....+.+.+.++.++     ++++|+.+.+.+++|++..+..+.+    +|+++++
T Consensus       162 EPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~  226 (239)
T d1v43a3         162 EPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL  226 (239)
T ss_dssp             STTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999999999999999766     8899999999999999875533332    5666543

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=4.1e-27  Score=191.05  Aligned_cols=192  Identities=13%  Similarity=0.154  Sum_probs=153.0

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCC--HHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLT--REAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~--~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      ++.++..+++|++  +.|.|||||||||+++++++...++  .|++|+.+.-.  .......++.+++++|+..++...|
T Consensus        21 L~~vsl~i~~Ge~--~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~lt   98 (242)
T d1oxxk2          21 LDNVNINIENGER--FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT   98 (242)
T ss_dssp             EEEEEEEECTTCE--EEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred             EeceEEEECCCCE--EEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccccc
Confidence            3344455578999  9999999999999999999998877  78888765321  1112223456888888887766667


Q ss_pred             CCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281          99 SMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus        99 ~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      +.+|+..+++       ....+.++..+++.++++..|+  ++...+++.++|||+.||     |+...|.++++|||++
T Consensus        99 v~eni~~~l~-------~~~~~~~~~~~~v~~~l~~~gL--~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~  169 (242)
T d1oxxk2          99 AFENIAFPLT-------NMKMSKEEIRKRVEEVAKILDI--HHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFS  169 (242)
T ss_dssp             HHHHHHGGGT-------TSSCCHHHHHHHHHHHHHHTTC--GGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred             HHHHhhhhhH-------hhcCCHHHHHHHHHHHHhhcCh--HhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCcc
Confidence            7788877765       4567889999999999999998  667788899999999998     7788899999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      ++|+.....+.+.+.++.++     ++++|+.+.+..++|+++.+..+.+    +|+++++
T Consensus       170 ~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999766     7899999999999999875533322    5666654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.86  E-value=1.4e-26  Score=188.12  Aligned_cols=197  Identities=13%  Similarity=0.166  Sum_probs=154.4

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHH---HHHHHHHHHhccCCcE
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREA---QQALRRTMEKYITTCR   92 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~---~~~l~~~i~~~~~~~~   92 (287)
                      |+..+++.++..+++|++  +.|.|||||||||+++++++...++  .|++++.+......   ....++.+++++|+..
T Consensus        14 g~~~al~~vsl~i~~Ge~--~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~   91 (240)
T d1g2912          14 GEVTAVREMSLEVKDGEF--MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA   91 (240)
T ss_dssp             TTEEEEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred             CCEEEEcceeeEEcCCCE--EEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchh
Confidence            333334445555688999  9999999999999999999998877  78888865322111   1122456888888887


Q ss_pred             EEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhh
Q psy2281          93 LILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKV  167 (287)
Q Consensus        93 ~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~  167 (287)
                      ++...|+.+++..+++       ....+.++..+++.+.++..++  ++...+++.++|||+.||     |+...|++++
T Consensus        92 L~~~ltV~eni~~~~~-------~~~~~~~e~~~~v~~~l~~~~l--~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLl  162 (240)
T d1g2912          92 LYPHMTVYDNIAFPLK-------LRKVPRQEIDQRVREVAELLGL--TELLNRKPRELSGGQRQRVALGRAIVRKPQVFL  162 (240)
T ss_dssp             CCTTSCHHHHHHHHHH-------HTTCCHHHHHHHHHHHHHHHTC--GGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred             hcchhhhhHhhhhhHH-------HcCCCHHHHHHHHHHHHHHcCC--hhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            7666677778777766       5567889999999999999998  566677889999999998     7888899999


Q ss_pred             cCCCcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         168 QQYPFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       168 ~dep~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      +||||+++|+.....+.+.+.++.++     |+++|+.+.+..++|+++.+..+.+    ++++++.
T Consensus       163 lDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             EECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             ecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999999999776     8899999999999999875533322    5565543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=2.8e-24  Score=177.10  Aligned_cols=198  Identities=14%  Similarity=0.082  Sum_probs=153.0

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCC------------CHHHHHHHHHH
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHL------------TREAQQALRRT   83 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l------------~~~~~~~l~~~   83 (287)
                      |...+++.++..+++|++  +.|.||||||||||++++++...++  .|++|+.+.-            ........++.
T Consensus        13 g~~~al~~vs~~i~~GEi--~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~   90 (258)
T d1b0ua_          13 GGHEVLKGVSLQARAGDV--ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR   90 (258)
T ss_dssp             TTEEEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred             CCEEEEcceeeEEcCCCE--EEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcc
Confidence            433344555555688999  9999999999999999999988776  7888875531            22344566778


Q ss_pred             HHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHH-HHHHHHcCCcHHH-----
Q psy2281          84 MEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFA-LRLAQQSDRNLRR-----  157 (287)
Q Consensus        84 i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~l~~~s~G~~r~-----  157 (287)
                      +++++|++.++...++.+++..+..      .....+..+..+.+.+.++..++  .+... +++.++|||+.||     
T Consensus        91 ig~vfQ~~~l~~~~tv~env~~~~~------~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~p~~LSGG~~QRv~iAr  162 (258)
T d1b0ua_          91 LTMVFQHFNLWSHMTVLENVMEAPI------QVLGLSKHDARERALKYLAKVGI--DERAQGKYPVHLSGGQQQRVSIAR  162 (258)
T ss_dssp             EEEECSSCCCCTTSCHHHHHHHHHH------HTTCCCHHHHHHHHHHHHHHTTC--CHHHHTSCGGGSCHHHHHHHHHHH
T ss_pred             eEEEEechhhccchhcchhhhhhHH------HhcCCCHHHHHHHHHHHHHHcCC--chhhhccCcccccHHHHHHHHHHH
Confidence            8999998866655566666665432      14456788899999999999998  56554 4688999999999     


Q ss_pred             HHHHHHHHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         158 AILMCEASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       158 al~~l~~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      |+...|+++++||||+++|+.....+.+.+.++.++    ++++|+.+.+..++|+++.|..+.+    +|++++.
T Consensus       163 aL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev~~  238 (258)
T d1b0ua_         163 ALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG  238 (258)
T ss_dssp             HHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            777778999999999999999999999999999876    7799999999999999885533322    5666643

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.85  E-value=1.7e-24  Score=174.77  Aligned_cols=180  Identities=16%  Similarity=0.126  Sum_probs=141.7

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC--CCHHHHHHH-HHHHHhccCCcEEEEEeCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH--LTREAQQAL-RRTMEKYITTCRLILCANS   99 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~--l~~~~~~~l-~~~i~~~~~~~~~i~~~~~   99 (287)
                      .++..+++|++  +.|.||||||||||++++++...++  .|++|+.+.  ++......+ ++.+++++|++.+++..|+
T Consensus        23 ~isl~i~~Ge~--~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv  100 (230)
T d1l2ta_          23 NVNLNIKEGEF--VSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTA  100 (230)
T ss_dssp             EEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCH
T ss_pred             ceEEEEcCCCE--EEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCccH
Confidence            33444578999  9999999999999999999998877  889998654  444444444 4569999999877766677


Q ss_pred             CCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcc
Q psy2281         100 MSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPE-FALRLAQQSDRNLRR-----AILMCEASKVQQYPFQ  173 (287)
Q Consensus       100 ~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~  173 (287)
                      .+++..++.-+    .....+.++..+.+.+.++..++  ++. ...++.++|||+.||     |+...|+++++||||+
T Consensus       101 ~eni~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~L--~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs  174 (230)
T d1l2ta_         101 LENVELPLIFK----YRGAMSGEERRKRALECLKMAEL--EERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTG  174 (230)
T ss_dssp             HHHHHHHHHTC----CSSCCCHHHHHHHHHHHHHHTTC--CGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred             HHHHhHHHHHh----ccCCCCHHHHHHHHHHHHHhhch--hhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCcc
Confidence            77777665521    12356778888889899999888  443 455788999999998     7778899999999999


Q ss_pred             cccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.+...+.+.+.++.++     |+++|+.+.+ +++|+++.+
T Consensus       175 ~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m  218 (230)
T d1l2ta_         175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYL  218 (230)
T ss_dssp             TSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEE
T ss_pred             ccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEE
Confidence            99999999999999999765     7899999765 678876543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.84  E-value=2.9e-25  Score=179.72  Aligned_cols=177  Identities=15%  Similarity=0.123  Sum_probs=139.4

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcc
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSR  110 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr  110 (287)
                      +++  +.|.||||||||||+++|++.+.++  .|.+++.+......   .++.+++++|+..++...|+.+|+..++   
T Consensus        24 ~e~--~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~---~~r~ig~v~Q~~~l~~~ltV~enl~~~l---   95 (240)
T d2onka1          24 RDY--CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP---ERRGIGFVPQDYALFPHLSVYRNIAYGL---   95 (240)
T ss_dssp             SSE--EEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT---TTSCCBCCCSSCCCCTTSCHHHHHHTTC---
T ss_pred             CEE--EEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH---HHcCceeeccchhhcccchhhHhhhhhh---
Confidence            345  8899999999999999999999877  88899866422111   1356888888876665566666765543   


Q ss_pred             cceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccCccCccHHH
Q psy2281         111 CLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQIVEPDWKI  185 (287)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~~~~~~~~~  185 (287)
                            ...+..+..+++.++++..|+  ++...+++.++|||+.||     |+...|+++++|||++++|+.....+.+
T Consensus        96 ------~~~~~~~~~~~v~~~l~~~gl--~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~  167 (240)
T d2onka1          96 ------RNVERVERDRRVREMAEKLGI--AHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME  167 (240)
T ss_dssp             ------TTSCHHHHHHHHHHHHHTTTC--TTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred             ------cccCHHHHHHHHHHHHHhcCc--HhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHH
Confidence                  245677888889999999888  566778889999999988     7777899999999999999999999999


Q ss_pred             HHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         186 YIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       186 ~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      .+.++.++     ++++|+.+.+..++|+++.+..+.+    +++++++
T Consensus       168 ~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         168 ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhc
Confidence            99999765     7799999999999999885533222    5555543

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.83  E-value=6.2e-25  Score=176.91  Aligned_cols=183  Identities=11%  Similarity=0.113  Sum_probs=140.3

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|++  +.|.|||||||||+++++++...++  .|++|+.+.-...   ..++.+++++|+..++...|+.+|
T Consensus        18 ~vs~~i~~Ge~--~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~---~~~r~ig~v~Q~~~l~~~~tV~en   92 (229)
T d3d31a2          18 NLSLKVESGEY--FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS---PEKHDIAFVYQNYSLFPHMNVKKN   92 (229)
T ss_dssp             EEEEEECTTCE--EEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC---HHHHTCEEECTTCCCCTTSCHHHH
T ss_pred             eeEEEECCCCE--EEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc---hhHhcceeeccccccCccccHHHH
Confidence            34444578999  9999999999999999999998887  8888986642211   124679999999877777778888


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCcccccC
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQQ  177 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d~  177 (287)
                      +..++.-       .....+   +++.++++..++  .+...+.+.++|||+.||     |+...|+++++||||+++|+
T Consensus        93 l~~~~~~-------~~~~~~---~~~~~~l~~~~l--~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~  160 (229)
T d3d31a2          93 LEFGMRM-------KKIKDP---KRVLDTARDLKI--EHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDP  160 (229)
T ss_dssp             HHHHHHH-------HCCCCH---HHHHHHHHHTTC--TTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred             HHHHHhh-------ccccHH---HHHHHHHHHhcc--hhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCH
Confidence            8776652       222222   345566667776  556667788999999988     66777899999999999999


Q ss_pred             ccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHH
Q psy2281         178 IVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLF  224 (287)
Q Consensus       178 ~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~  224 (287)
                      .....+.+.+.++.++     ++++|+.+.+..++|+++-+..+.+    +|++++
T Consensus       161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~  216 (229)
T d3d31a2         161 RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF  216 (229)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence            9999999999999766     7799999999999999875533322    555554

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1e-19  Score=144.47  Aligned_cols=100  Identities=16%  Similarity=0.291  Sum_probs=90.6

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC---------------------------------------
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP---------------------------------------   62 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------------------   62 (287)
                      ..+.++.+++++..++++|+||+|+|||+++..+++.....                                       
T Consensus         2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~~K   81 (198)
T d2gnoa2           2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRK   81 (198)
T ss_dssp             HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSE
T ss_pred             HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCcccCCCE
Confidence            35678889999988889999999999999999999876311                                       


Q ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHhcccceeecCCCCH
Q psy2281          63 VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIRSRCLCIRIPAPTH  121 (287)
Q Consensus        63 ~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~~~~  121 (287)
                      +++|||+|.++..++++|++.||+++.++.|+++|+..+.+.++++|||+.+.|+.+++
T Consensus        82 viIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~~  140 (198)
T d2gnoa2          82 YVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE  140 (198)
T ss_dssp             EEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred             EEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCchH
Confidence            99999999999999999999999999999999999999999999999999999986643

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.3e-24  Score=177.23  Aligned_cols=183  Identities=12%  Similarity=0.154  Sum_probs=138.3

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEE
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLIL   95 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~   95 (287)
                      |...+++.++..+++|++  +.|.||||+|||||++++++...++  .|.+++.+....  ...+++.+.++++...++.
T Consensus        13 g~~~vl~~vs~~v~~Gei--~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~--~~~~~~~i~~vpq~~~~~~   88 (238)
T d1vpla_          13 GKKEILKGISFEIEEGEI--FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--PHEVRKLISYLPEEAGAYR   88 (238)
T ss_dssp             TTEEEEEEEEEEECTTCE--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC--HHHHHTTEEEECTTCCCCT
T ss_pred             CCEEEEccceeEEcCCCE--EEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC--hHHHHhhEeEeeeccccCC
Confidence            333344445555678999  9999999999999999999999887  788887664321  2345566777776654433


Q ss_pred             EeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281          96 CANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus        96 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      ..+..+++.....       +...+.++..+.+...++..++  ++...+.+.++|+|+.||     |+...|+++++||
T Consensus        89 ~ltv~e~l~~~~~-------~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDE  159 (238)
T d1vpla_          89 NMQGIEYLRFVAG-------FYASSSSEIEEMVERATEIAGL--GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDE  159 (238)
T ss_dssp             TSBHHHHHHHHHH-------HHCCCHHHHHHHHHHHHHHHCC--GGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CccHHHHHHHHHH-------hcCCCHHHHHHHHHHHHHhCCC--HHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence            3333333322221       4466788888889999888887  566677788999999888     6667789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |++++|+.....+.+.+.++.++    ++++|+.+++..+||++.-+
T Consensus       160 Pt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl  206 (238)
T d1vpla_         160 PTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALI  206 (238)
T ss_dssp             TTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            99999999998899999988766    78999999999999998743

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.78  E-value=1.6e-24  Score=178.68  Aligned_cols=193  Identities=16%  Similarity=0.134  Sum_probs=142.6

Q ss_pred             cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE
Q psy2281          17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLI   94 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i   94 (287)
                      +|...+++.++..+++|++  +.|.||||+|||||++++++.+.++  .|.+++.+..........+..+.+++|+..++
T Consensus        14 yg~~~aL~~vs~~v~~Gei--~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~   91 (254)
T d1g6ha_          14 FGEFKALDGVSISVNKGDV--TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL   91 (254)
T ss_dssp             ETTEEEEEEECCEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred             ECCeEEEcceEEEECCCCE--EEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccC
Confidence            3443445555666688999  9999999999999999999998877  88899876433222233334477788877665


Q ss_pred             EEeCCCCCCcHHHhcccc------eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHH
Q psy2281          95 LCANSMSQVIPAIRSRCL------CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCE  163 (287)
Q Consensus        95 ~~~~~~~~l~~~l~sr~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~  163 (287)
                      ...+..+|+..+...+..      .........++..+++..+++..++  +....+.+.++|+|+.|+     |+...|
T Consensus        92 ~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~LSgG~~Qrv~iAraL~~~P  169 (254)
T d1g6ha_          92 KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL--SHLYDRKAGELSGGQMKLVEIGRALMTNP  169 (254)
T ss_dssp             GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTC--GGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCc--chhccCchhhCCcHHHHHHHHHHHHHhCc
Confidence            555666665433221110      0112234556777788888888887  445556788999999988     777778


Q ss_pred             HHhhcCCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         164 ASKVQQYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       164 ~~~~~dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      +++++|||++++|+.....+.+.+.++.++    ++++|+.+.+..+||+++.+
T Consensus       170 ~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm  223 (254)
T d1g6ha_         170 KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVM  223 (254)
T ss_dssp             SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEE
T ss_pred             CchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEE
Confidence            999999999999999999999999998766    77999999999999998754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.76  E-value=9.4e-23  Score=166.38  Aligned_cols=185  Identities=17%  Similarity=0.088  Sum_probs=126.0

Q ss_pred             cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEE
Q psy2281          17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLI   94 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i   94 (287)
                      +|...+++.++..+++|++  +.|.||||+||||+++++++.+.++  .|.+++.+.........-+..+.+.+|+..++
T Consensus        16 yg~~~al~~vs~~i~~Gei--~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~   93 (240)
T d1ji0a_          16 YGAIHAIKGIDLKVPRGQI--VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIF   93 (240)
T ss_dssp             ETTEEEEEEEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCC
T ss_pred             ECCEEEEeeeeEEECCCCE--EEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccC
Confidence            3444444555566688999  9999999999999999999998877  88889876433221111122355666666554


Q ss_pred             EEeCCCCCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhc
Q psy2281          95 LCANSMSQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE-GLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQ  168 (287)
Q Consensus        95 ~~~~~~~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~  168 (287)
                      ...++.+++......        ....+...+.+.+++... ++  ++...+.+.++|+|+.||     |+...|+++++
T Consensus        94 ~~ltv~en~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLll  163 (240)
T d1ji0a_          94 PELTVYENLMMGAYN--------RKDKEGIKRDLEWIFSLFPRL--KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMM  163 (240)
T ss_dssp             TTSBHHHHHHGGGTT--------CCCSSHHHHHHHHHHHHCHHH--HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CcccHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHhhCh--HHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeee
Confidence            444444444332221        112233333444443322 22  222234456789998888     77777899999


Q ss_pred             CCCcccccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         169 QYPFQIDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       169 dep~~~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      |||++++|+.....+.+.++++.++    ++++|+...+.+++|+++-+
T Consensus       164 DEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl  212 (240)
T d1ji0a_         164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVL  212 (240)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEE
T ss_pred             cCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence            9999999999999999999999776    78999999999999998744

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=1.6e-16  Score=130.08  Aligned_cols=150  Identities=20%  Similarity=0.279  Sum_probs=109.0

Q ss_pred             CCCCCccCcHHHHHHHHHHH----------hcCC-CCc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLL----------KEGD-FPH-LLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~----------~~g~-~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      .+|++++|.+.+++.|+..+          +-|. .|. ++|+||||||||++++++++++..+                
T Consensus         6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~   85 (247)
T d1ixza_           6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGV   85 (247)
T ss_dssp             CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTH
T ss_pred             CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhccccH
Confidence            48999999998888777655          1132 233 9999999999999999999988655                


Q ss_pred             ------------------EEEEeCCCCCCH--------------HHHHHHHHHHHhccCCc--EEEEEeCCCCCCcHHHh
Q psy2281          63 ------------------VIILNETDHLTR--------------EAQQALRRTMEKYITTC--RLILCANSMSQVIPAIR  108 (287)
Q Consensus        63 ------------------~i~ide~d~l~~--------------~~~~~l~~~i~~~~~~~--~~i~~~~~~~~l~~~l~  108 (287)
                                        +|+|||+|.+..              ...+.|+..|+....+.  .++.++|.++.+.++++
T Consensus        86 ~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~  165 (247)
T d1ixza_          86 GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALL  165 (247)
T ss_dssp             HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGG
T ss_pred             HHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHc
Confidence                              999999986421              12345666677654433  34456777888999997


Q ss_pred             --cccc-eeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHHH
Q psy2281         109 --SRCL-CIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR----NLRRAILM  161 (287)
Q Consensus       109 --sr~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G----~~r~al~~  161 (287)
                        +|+. .+.|+.|+.++..++++..+...... .+.....+++.+.|    |++.++..
T Consensus       166 R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~di~~lv~~  224 (247)
T d1ixza_         166 RPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNE  224 (247)
T ss_dssp             STTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHHHHCCCCCHHHHHHHHHH
Confidence              4784 79999999999999999988776653 33346667776655    66665543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.68  E-value=3.7e-21  Score=157.07  Aligned_cols=189  Identities=14%  Similarity=0.096  Sum_probs=125.0

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|+.  +.|+||||||||||++++++.+.+.  .|.+|+.+.- .-....+++.+.+++|++.++ ..+..+
T Consensus        19 ~~isl~i~~Ge~--vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~-~~~~~~~r~~i~~v~Q~~~lf-~~ti~e   94 (242)
T d1mv5a_          19 RDISFEAQPNSI--IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPID-NISLENWRSQIGFVSQDSAIM-AGTIRE   94 (242)
T ss_dssp             EEEEEEECTTEE--EEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEEST-TTSCSCCTTTCCEECCSSCCC-CEEHHH
T ss_pred             eeeEEEEcCCCE--EEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEec-cccHHHHHhheEEEccccccC-Ccchhh
Confidence            344445578888  9999999999999999999998776  7888986632 111234566788888887644 335556


Q ss_pred             CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-CCCHHHH----HHHHHHcCCcHHH-----HHHHHHHHhhcCCC
Q psy2281         102 QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-TIPPEFA----LRLAQQSDRNLRR-----AILMCEASKVQQYP  171 (287)
Q Consensus       102 ~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~----~~l~~~s~G~~r~-----al~~l~~~~~~dep  171 (287)
                      |+....        ....+.+.+...++......-+ ..++...    +.-.++|||+.||     |+...|+++++|||
T Consensus        95 Ni~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEp  166 (242)
T d1mv5a_          95 NLTYGL--------EGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA  166 (242)
T ss_dssp             HTTSCT--------TSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECC
T ss_pred             heeccc--------ccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence            654321        1224455544444332211111 1111111    1123478887777     78888999999999


Q ss_pred             cccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHhcC----CCHHHHHH
Q psy2281         172 FQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLVHS----IPVNVLFK  225 (287)
Q Consensus       172 ~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~~~----~~~~~i~~  225 (287)
                      ++++|+.+...+.+.+.++.+.   |+++|+...+.. +|+++.+-.+.    -+++++++
T Consensus       167 ts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~~G~~~eLl~  226 (242)
T d1mv5a_         167 TASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQITGSGKHNELVA  226 (242)
T ss_dssp             SCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEECCCSCHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh-CCEEEEEECCEEEEECCHHHHHh
Confidence            9999999999999999988754   789999987764 88887542222    25666654

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=2.7e-20  Score=151.16  Aligned_cols=170  Identities=14%  Similarity=0.148  Sum_probs=111.1

Q ss_pred             HHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          27 RNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        27 ~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                      +..+++|++  +.|.||||+|||||++++++..... .|.+++.+.-... ...+.....+.++.....+.    ..+..
T Consensus        19 sl~I~~Gei--~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~~i~~~~-~~~~~~~~~~~~~~~~~~~~----~~v~~   91 (231)
T d1l7vc_          19 SGEVRAGEI--LHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWS-ATKLALHRAYLSQQQTPPFA----TPVWH   91 (231)
T ss_dssp             EEEEETTCE--EECBCCTTSSHHHHHHHHHTSCCCSSEEEESSSBGGGSC-HHHHHHHEEEECSCCCCCSS----CBHHH
T ss_pred             EEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCceEEEECCEECCcCC-HHHHHhhceeeeccccCCcc----ccHHH
Confidence            334578999  9999999999999999999965432 7788886632211 22233333333332110000    00111


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH---HHHHH---------HHHhhcCCCcc
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR---AILMC---------EASKVQQYPFQ  173 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~---al~~l---------~~~~~~dep~~  173 (287)
                      .+.       +.... ....+++.++++..++  .+...+.+.++|+|+.||   |...+         |+++++|||++
T Consensus        92 ~~~-------~~~~~-~~~~~~~~~~~~~~~l--~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~  161 (231)
T d1l7vc_          92 YLT-------LHQHD-KTRTELLNDVAGALAL--DDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMN  161 (231)
T ss_dssp             HHH-------HHCSC-TTCHHHHHHHHHHTTC--TTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCST
T ss_pred             Hhh-------hccch-hhHHHHHHHHHHhcCC--HhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCC
Confidence            111       11111 1223455666666666  455566778899999888   33333         26899999999


Q ss_pred             cccCccCccHHHHHHHHHHH----HHhccChhHHHHHHHHHHHH
Q psy2281         174 IDQQIVEPDWKIYIRDTAKL----IISEQSPKKLLEVRTRLYEL  213 (287)
Q Consensus       174 ~~d~~~~~~~~~~i~~l~~~----i~~~~~~~~~~~~~~~~~~l  213 (287)
                      ++|+.....+.+.+.++.++    ++++|+.+.+..++|+++-+
T Consensus       162 gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl  205 (231)
T d1l7vc_         162 SLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLL  205 (231)
T ss_dssp             TCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence            99999988999999998766    77999999999999998744

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.66  E-value=5.7e-15  Score=118.16  Aligned_cols=152  Identities=16%  Similarity=0.228  Sum_probs=114.7

Q ss_pred             CCCCcc-C--cHHHHHHHHHHHhc-CC-CCcEEEeCCCCCcHHHHHHHHHHHhCC-------------------------
Q psy2281          12 NLQKLD-F--HCKQANHLRNLLKE-GD-FPHLLFYGPSGAGKKTRIMALLKELYG-------------------------   61 (287)
Q Consensus        12 ~~~~~~-~--~~~~~~~l~~~~~~-g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~-------------------------   61 (287)
                      +|++++ |  +..+...++.+.+. |. .++++|+||+|+|||+|++++++....                         
T Consensus         8 tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (213)
T d1l8qa2           8 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGT   87 (213)
T ss_dssp             CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTC
T ss_pred             ChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccc
Confidence            788865 3  55667778877743 32 234999999999999999999987531                         


Q ss_pred             -----------CEEEEeCCCCCC--HHHHHHHHHHHHhcc-CCcEEEEEeCCCC----CCcHHHhcccc---eeecCCCC
Q psy2281          62 -----------PVIILNETDHLT--REAQQALRRTMEKYI-TTCRLILCANSMS----QVIPAIRSRCL---CIRIPAPT  120 (287)
Q Consensus        62 -----------~~i~ide~d~l~--~~~~~~l~~~i~~~~-~~~~~i~~~~~~~----~l~~~l~sr~~---~~~~~~~~  120 (287)
                                 ++++|||++.+.  +..+..+...+.... ....++++++..+    ...+.++||+.   ++.+. |+
T Consensus        88 ~~~~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~  166 (213)
T d1l8qa2          88 INEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LD  166 (213)
T ss_dssp             HHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CC
T ss_pred             hhhHHHHHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC-CC
Confidence                       289999999875  455667777777654 4556777777653    36788999983   56775 67


Q ss_pred             HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy2281         121 HEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRRAILMCEAS  165 (287)
Q Consensus       121 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~al~~l~~~  165 (287)
                      .++..+++++.++..|+.+++++++++++.+ .++|.....+..+
T Consensus       167 d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l  210 (213)
T d1l8qa2         167 NKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLI  210 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHh
Confidence            7889999999999999999999999999987 4677754444443

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.9e-21  Score=157.14  Aligned_cols=190  Identities=14%  Similarity=0.095  Sum_probs=123.0

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++.++..+++|+.  +.|+||||||||||+++|++.+.+.  .|++|+.+.- .-....+++.+.+++|++.++ ..+..
T Consensus        30 L~~isl~i~~Ge~--vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~-~~~~~~~r~~i~~v~Q~~~lf-~~tv~  105 (251)
T d1jj7a_          30 LQGLTFTLRPGEV--TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLP-QYEHRYLHRQVAAVGQEPQVF-GRSLQ  105 (251)
T ss_dssp             EEEEEEEECTTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-GBCHHHHHHHEEEECSSCCCC-SSBHH
T ss_pred             EeceEEEEcCCCE--EEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecc-hhhhHHHHHHhhhcccccccc-Ccchh
Confidence            3445555688999  9999999999999999999998877  8899987642 222456788899999987543 33444


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHH-----HHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCC
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTN-----ICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQY  170 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~de  170 (287)
                      +|+..++.        ...+..+.......     .+....-.++....+...++|||+.||     |+...|.++++||
T Consensus       106 eni~~g~~--------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDE  177 (251)
T d1jj7a_         106 ENIAYGLT--------QKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDD  177 (251)
T ss_dssp             HHHHCSCS--------SCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             hhhhhhhc--------ccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecC
Confidence            44432211        12333333332222     111110000111112224578887777     7777789999999


Q ss_pred             CcccccCccCccHHHHHHHHHHH-----HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         171 PFQIDQQIVEPDWKIYIRDTAKL-----IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       171 p~~~~d~~~~~~~~~~i~~l~~~-----i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      ||+++|+.+...+.+.+.++.+.     ++++|+...+. .+|+++.|-.+.+    +++++++
T Consensus       178 pTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~-~aDrI~vl~~G~iv~~Gt~~eLl~  240 (251)
T d1jj7a_         178 ATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLME  240 (251)
T ss_dssp             TTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHH-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred             cCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            99999998888888888777543     78999998765 4888775533222    5666654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.64  E-value=1.2e-14  Score=120.27  Aligned_cols=162  Identities=19%  Similarity=0.268  Sum_probs=115.3

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHHHHHh-----cCC-CCcEEEeCCCCCcHHHHHHHHHHHhCCC--------------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLRNLLK-----EGD-FPHLLFYGPSGAGKKTRIMALLKELYGP--------------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~~~~~-----~g~-~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--------------   62 (287)
                      .+.+.|+|+.   ++|.+..++.+..++.     .+. .++++|+||||+||||+++++++.+...              
T Consensus         8 ~l~~~y~p~~---l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~   84 (276)
T d1fnna2           8 VFSPSYVPKR---LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYR   84 (276)
T ss_dssp             GGSTTCCCSC---CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCC
T ss_pred             cCCCCCCCCC---CCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhh
Confidence            3566799965   4777766666666653     233 3459999999999999999999887432              


Q ss_pred             ------------------------------------------EEEEeCCCCCCHHHHHHHHHHHHh---c-cCCcEEEEE
Q psy2281          63 ------------------------------------------VIILNETDHLTREAQQALRRTMEK---Y-ITTCRLILC   96 (287)
Q Consensus        63 ------------------------------------------~i~ide~d~l~~~~~~~l~~~i~~---~-~~~~~~i~~   96 (287)
                                                                .+++|+.+.+.......+...+..   . .....++.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  164 (276)
T d1fnna2          85 NFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIV  164 (276)
T ss_dssp             SHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEE
T ss_pred             hhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeec
Confidence                                                      677788887776655444433222   1 222345555


Q ss_pred             eCCC---CCCcHHHhcccc--eeecCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHH---------cCCcHHHHHH
Q psy2281          97 ANSM---SQVIPAIRSRCL--CIRIPAPTHEEIVSVLTNICKKEG--LTIPPEFALRLAQQ---------SDRNLRRAIL  160 (287)
Q Consensus        97 ~~~~---~~l~~~l~sr~~--~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~---------s~G~~r~al~  160 (287)
                      ++..   +.+.+++.+|+.  .+.|++++.+++.+++...++..+  ..+++++++.+++.         ++|+.|++++
T Consensus       165 ~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~  244 (276)
T d1fnna2         165 GHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAID  244 (276)
T ss_dssp             ESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred             CCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHH
Confidence            5553   357788888873  588999999999999998877633  34689999988764         5899999999


Q ss_pred             HHHHHhh
Q psy2281         161 MCEASKV  167 (287)
Q Consensus       161 ~l~~~~~  167 (287)
                      .++....
T Consensus       245 ll~~a~~  251 (276)
T d1fnna2         245 ILYRSAY  251 (276)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9877554

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.6e-15  Score=124.67  Aligned_cols=143  Identities=20%  Similarity=0.278  Sum_probs=104.2

Q ss_pred             CCCCCCccCcHHHHHHHHHHHh-----------cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------
Q psy2281          10 PNNLQKLDFHCKQANHLRNLLK-----------EGDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------   62 (287)
Q Consensus        10 p~~~~~~~~~~~~~~~l~~~~~-----------~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------   62 (287)
                      .-+|+|+.|.+.+++.+...+.           ....|. ++|+||||||||++++++++++..+               
T Consensus         8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~~~g   87 (256)
T d1lv7a_           8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG   87 (256)
T ss_dssp             CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCC
T ss_pred             CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhcchh
Confidence            4578999999988887776551           123333 9999999999999999999988654               


Q ss_pred             -------------------EEEEeCCCCCCH--------------HHHHHHHHHHHhccCC--cEEEEEeCCCCCCcHHH
Q psy2281          63 -------------------VIILNETDHLTR--------------EAQQALRRTMEKYITT--CRLILCANSMSQVIPAI  107 (287)
Q Consensus        63 -------------------~i~ide~d~l~~--------------~~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~~l  107 (287)
                                         +++|||+|.+..              ...+.|+..++....+  ..+|.++|.++.+.+++
T Consensus        88 ~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al  167 (256)
T d1lv7a_          88 VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPAL  167 (256)
T ss_dssp             CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhH
Confidence                               888999876421              1234566667654333  34555778888999999


Q ss_pred             hc--cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Q psy2281         108 RS--RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR  153 (287)
Q Consensus       108 ~s--r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G  153 (287)
                      ++  |+ ..+.|+.|+.++..++++..+++.++. .+.....+++.+.|
T Consensus       168 ~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G  215 (256)
T d1lv7a_         168 LRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPG  215 (256)
T ss_dssp             GSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTT
T ss_pred             cCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHHHHHhCCC
Confidence            75  77 578999999999999999988877664 33345666665444

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.62  E-value=2.8e-20  Score=152.72  Aligned_cols=184  Identities=13%  Similarity=0.050  Sum_probs=122.6

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++.++..+++|+.  +.|+||||||||||+++|++.+.+.  .|.+|+.+.- .-....+++.+.+++|++.++. .+..
T Consensus        31 L~~isl~i~~Ge~--iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~-~~~~~~~r~~i~~v~Q~~~l~~-~ti~  106 (253)
T d3b60a1          31 LRNINLKIPAGKT--VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLR-EYTLASLRNQVALVSQNVHLFN-DTVA  106 (253)
T ss_dssp             EEEEEEEECTTCE--EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETT-TBCHHHHHHTEEEECSSCCCCS-SBHH
T ss_pred             eeceEEEEcCCCE--EEEECCCCChHHHHHHHHhcccCCCccEEEECCcccc-hhhhhhhhheEEEEeeccccCC-cchh
Confidence            3445555578988  9999999999999999999998877  8899987632 2224557777888888774432 2222


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHH-----------HHHHHHHcCCcHHH-----HHHHHHH
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEF-----------ALRLAQQSDRNLRR-----AILMCEA  164 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------~~~l~~~s~G~~r~-----al~~l~~  164 (287)
                      +++..+        .....+.+++.+.++    ..++  .+..           -+...++|+|+.||     |+...+.
T Consensus       107 ~n~~~~--------~~~~~~~~~i~~a~~----~~~l--~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~  172 (253)
T d3b60a1         107 NNIAYA--------RTEEYSREQIEEAAR----MAYA--MDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSP  172 (253)
T ss_dssp             HHHHTT--------TTSCCCHHHHHHHHH----TTTC--HHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCS
T ss_pred             hhhhhc--------CcccCCHHHHHHHHH----HHhH--HHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCC
Confidence            222111        012345555444332    2222  1111           11223578887777     7777789


Q ss_pred             HhhcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         165 SKVQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       165 ~~~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      ++++||||+++|+.+...+.+.+.++.+.   |+++|+...+. .+|+++.|-.+.+    +++++++
T Consensus       173 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~~G~~~eLl~  239 (253)
T d3b60a1         173 ILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLA  239 (253)
T ss_dssp             EEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            99999999999999988888888888654   78999998775 5888775533322    6666654

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=5.8e-15  Score=121.72  Aligned_cols=147  Identities=20%  Similarity=0.271  Sum_probs=105.0

Q ss_pred             CCCCccCcHHHHHHHHHHH-----------hcCCC-Cc-EEEeCCCCCcHHHHHHHHHHHhCCC----------------
Q psy2281          12 NLQKLDFHCKQANHLRNLL-----------KEGDF-PH-LLFYGPSGAGKKTRIMALLKELYGP----------------   62 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~-----------~~g~~-~~-~~l~Gp~G~GKTtl~~~l~~~~~~~----------------   62 (287)
                      .|+++.|.+.+++.++..+           +.|.. |. ++|+||||||||++++++++....+                
T Consensus         2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g~   81 (258)
T d1e32a2           2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE   81 (258)
T ss_dssp             CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTTH
T ss_pred             ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhccccccc
Confidence            5789999998888887764           11432 33 9999999999999999999987644                


Q ss_pred             ------------------EEEEeCCCCCCHH-----------HHHHHHHHHHhccCC--cEEEEEeCCCCCCcHHHhc--
Q psy2281          63 ------------------VIILNETDHLTRE-----------AQQALRRTMEKYITT--CRLILCANSMSQVIPAIRS--  109 (287)
Q Consensus        63 ------------------~i~ide~d~l~~~-----------~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~~l~s--  109 (287)
                                        ++++||+|.+...           ....+...+.....+  ..++.++|.++.+.+++++  
T Consensus        82 ~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~g  161 (258)
T d1e32a2          82 SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFG  161 (258)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTT
T ss_pred             HHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcc
Confidence                              9999999987532           122333334433222  3455677788899999987  


Q ss_pred             cc-ceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHH
Q psy2281         110 RC-LCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDR----NLRRAI  159 (287)
Q Consensus       110 r~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G----~~r~al  159 (287)
                      |+ ..+.|+.|+.+++..+++..++...+. ++.....+++.+.|    |++.++
T Consensus       162 Rfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adl~~lv  215 (258)
T d1e32a2         162 RFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALC  215 (258)
T ss_dssp             SSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHH
T ss_pred             cccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcccCCCHHHHHHHH
Confidence            77 469999999999999999888765543 22235667776655    665544

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.1e-17  Score=136.04  Aligned_cols=187  Identities=16%  Similarity=0.104  Sum_probs=124.5

Q ss_pred             HHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          25 HLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        25 ~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .++..+++|+.  +.|+||+|||||||++++++.+.+.  .|.+|+.+.-. -....+++.+.+++|++.+ +..|..+|
T Consensus        21 ~isl~i~~Ge~--vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~-~~~~~lr~~i~~v~Q~~~l-f~~Ti~eN   96 (241)
T d2pmka1          21 NINLSIKQGEV--IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLAL-ADPNWLRRQVGVVLQDNVL-LNRSIIDN   96 (241)
T ss_dssp             EEEEEEETTCE--EEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-SCHHHHHHHEEEECSSCCC-TTSBHHHH
T ss_pred             eeEEEEcCCCE--EEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecc-cchhhhhceEEEEeccccc-CCcccccc
Confidence            44445578988  9999999999999999999998876  89999876422 2245678889999998743 34455455


Q ss_pred             CcHHHhcccceeecCCCCHHHHHHHHHHHHHHh---CC--CCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCc
Q psy2281         103 VIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKE---GL--TIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPF  172 (287)
Q Consensus       103 l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~---~~--~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~  172 (287)
                      +..+         -+..+.+++...++......   .+  .++....+....+|||+.||     |+...+.++++||||
T Consensus        97 i~~~---------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpt  167 (241)
T d2pmka1          97 ISLA---------NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEAT  167 (241)
T ss_dssp             HCTT---------STTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             cccc---------CccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCc
Confidence            4332         12345555444433221110   00  00001112234678887777     677778899999999


Q ss_pred             ccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         173 QIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       173 ~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      +++|+.+...+.+.+.++.+.   |+++|+...+. .+|+++.|-.+.+    +++++++
T Consensus       168 s~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~~G~~~ell~  226 (241)
T d2pmka1         168 SALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLS  226 (241)
T ss_dssp             SCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999988888888887654   78999998775 5788875433222    5565553

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.59  E-value=6.7e-19  Score=144.26  Aligned_cols=185  Identities=16%  Similarity=0.133  Sum_probs=126.3

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCC
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSM  100 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~  100 (287)
                      ++.++..+++|+.  ++|+||+|||||||+++|++...+.  .|.+|+.+. ..-....+++.+.+++|++.+ +..|..
T Consensus        34 L~~isl~i~~Ge~--vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i-~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~  109 (255)
T d2hyda1          34 LKDINLSIEKGET--VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI-KDFLTGSLRNQIGLVQQDNIL-FSDTVK  109 (255)
T ss_dssp             EEEEEEEECTTCE--EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG-GGSCHHHHHHTEEEECSSCCC-CSSBHH
T ss_pred             eeceEEEEcCCCE--EEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc-ccCCHHHhhheeeeeeccccC-CCCCHH
Confidence            3445555688999  9999999999999999999988876  899998763 222245678889999888744 445555


Q ss_pred             CCCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCC-----CCCH----HHHHHHHHHcCCcHHH-----HHHHHHHHh
Q psy2281         101 SQVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-----TIPP----EFALRLAQQSDRNLRR-----AILMCEASK  166 (287)
Q Consensus       101 ~~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~----~~~~~l~~~s~G~~r~-----al~~l~~~~  166 (287)
                      +|+..+         .+..+++++.+.++    ..++     .+++    ..-+.-.++|+|+.||     |+...+.++
T Consensus       110 eNi~~g---------~~~~~~~~~~~al~----~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~il  176 (255)
T d2hyda1         110 ENILLG---------RPTATDEEVVEAAK----MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL  176 (255)
T ss_dssp             HHHGGG---------CSSCCHHHHHHHHH----HTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEE
T ss_pred             HHHhcc---------CcCCCHHHHHHHHH----HhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEE
Confidence            665432         12345555554433    3332     0010    1112234578888777     777788999


Q ss_pred             hcCCCcccccCccCccHHHHHHHHHHH---HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         167 VQQYPFQIDQQIVEPDWKIYIRDTAKL---IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       167 ~~dep~~~~d~~~~~~~~~~i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      ++|||++++|+.+...+.+.+.++.+.   |+++|+...+. .+|+++.|-.+.+    +++++++
T Consensus       177 ilDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~-~~D~ii~l~~G~iv~~G~~~eLl~  241 (255)
T d2hyda1         177 ILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIA  241 (255)
T ss_dssp             EEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred             EEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999888888888777654   77999998775 5788775432222    5565554

>d1sxje1 a.80.1.1 (E:256-354) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.6e-14  Score=98.51  Aligned_cols=95  Identities=39%  Similarity=0.698  Sum_probs=89.3

Q ss_pred             ccHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HhCChHHHHHHHHHHHHHhhHHhcCC
Q psy2281         181 PDWKIYIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLL--ANCDSDLKSKSIEMAAMFEHRIHKGS  258 (287)
Q Consensus       181 ~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~g~  258 (287)
                      ++|+..+.++++.++..++++.+..++.++|+++..++||+.|+..+...+.  ++.+...+.+++..++.|++||..|.
T Consensus         2 pdWe~~i~~ia~~I~~eqsp~~L~~iR~~lYeLL~~cIpp~~Ilk~L~~~Ll~~~~~d~~lk~eii~~aa~yE~Rl~~Gs   81 (99)
T d1sxje1           2 PDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGN   81 (99)
T ss_dssp             CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHCCC
Confidence            5789999999999999999999999999999999999999999999999886  36788889999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHH
Q psy2281         259 KPIFHIEAYVASFMAMY  275 (287)
Q Consensus       259 ~~~~~l~~~i~~~~~~~  275 (287)
                      .+.+|||+|+|++|+.+
T Consensus        82 K~IfHLEaFvAkfM~~l   98 (99)
T d1sxje1          82 KAIFHLEGFIAKVMCCL   98 (99)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhc
Confidence            99999999999999865

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.58  E-value=1.5e-14  Score=120.33  Aligned_cols=163  Identities=22%  Similarity=0.264  Sum_probs=110.0

Q ss_pred             ccccccCCCCCCCccCcHHHHHHHH----HHHhcCCCCc-----EEEeCCCCCcHHHHHHHHHHHhCCC-----------
Q psy2281           3 LWVDKYRPNNLQKLDFHCKQANHLR----NLLKEGDFPH-----LLFYGPSGAGKKTRIMALLKELYGP-----------   62 (287)
Q Consensus         3 ~w~~k~~p~~~~~~~~~~~~~~~l~----~~~~~g~~~~-----~~l~Gp~G~GKTtl~~~l~~~~~~~-----------   62 (287)
                      +|-++|+|..+   .+.+...+.+.    ..+..|..|.     ++|+||||+|||++++++++.+...           
T Consensus         8 ~l~~~~~P~~~---~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~   84 (287)
T d1w5sa2           8 VFDENYIPPEL---RVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQA   84 (287)
T ss_dssp             GGSTTCCCSSC---SSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hcCCccCCCCC---CCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceee
Confidence            57788999655   45444444443    3344444332     5778999999999999999875210           


Q ss_pred             --------------------------------------------------EEEEeCCCCCC------HHHHHHHHHHHHh
Q psy2281          63 --------------------------------------------------VIILNETDHLT------REAQQALRRTMEK   86 (287)
Q Consensus        63 --------------------------------------------------~i~ide~d~l~------~~~~~~l~~~i~~   86 (287)
                                                                        ++++|++|.+.      .+....+.+.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~  164 (287)
T d1w5sa2          85 YVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEE  164 (287)
T ss_dssp             EEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHH
T ss_pred             eeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHh
Confidence                                                              67788887542      2333444444443


Q ss_pred             cc-----CCcEEEEEeCCCCC------CcHHHhccc-ceeecCCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHc-
Q psy2281          87 YI-----TTCRLILCANSMSQ------VIPAIRSRC-LCIRIPAPTHEEIVSVLTNICKKEG--LTIPPEFALRLAQQS-  151 (287)
Q Consensus        87 ~~-----~~~~~i~~~~~~~~------l~~~l~sr~-~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~s-  151 (287)
                      ..     ....++++++..+.      ..+.+.+|. ..+.|++++.+++.+++...++...  ..+++++++.+++++ 
T Consensus       165 l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~  244 (287)
T d1w5sa2         165 IPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG  244 (287)
T ss_dssp             SCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred             cchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHh
Confidence            32     23345555554432      335666665 6789999999999999999887643  346899999999876 


Q ss_pred             -----CCcHHHHHHHHHHHhhc
Q psy2281         152 -----DRNLRRAILMCEASKVQ  168 (287)
Q Consensus       152 -----~G~~r~al~~l~~~~~~  168 (287)
                           .|+.|+|++.+......
T Consensus       245 ~~~~~~gd~R~ai~~l~~a~~~  266 (287)
T d1w5sa2         245 EDKGGDGSARRAIVALKMACEM  266 (287)
T ss_dssp             GGGTSCCCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHHHHHHHH
Confidence                 69999999998876544

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=1.5e-15  Score=125.78  Aligned_cols=126  Identities=27%  Similarity=0.386  Sum_probs=87.7

Q ss_pred             CC-CCCCccCcHHHHHHHHHHH-----------hcCCCCc--EEEeCCCCCcHHHHHHHHHHHhCCC-------------
Q psy2281          10 PN-NLQKLDFHCKQANHLRNLL-----------KEGDFPH--LLFYGPSGAGKKTRIMALLKELYGP-------------   62 (287)
Q Consensus        10 p~-~~~~~~~~~~~~~~l~~~~-----------~~g~~~~--~~l~Gp~G~GKTtl~~~l~~~~~~~-------------   62 (287)
                      |+ +|+++.|.+++++.+...+           +.|..++  ++|+||||||||++++++|+.+..+             
T Consensus         2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~~   81 (265)
T d1r7ra3           2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW   81 (265)
T ss_dssp             CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTSC
T ss_pred             CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhcc
Confidence            54 8999998776655555443           1243322  9999999999999999999987644             


Q ss_pred             ---------------------EEEEeCCCCCCHH--------------HHHHHHHHHHhccCC--cEEEEEeCCCCCCcH
Q psy2281          63 ---------------------VIILNETDHLTRE--------------AQQALRRTMEKYITT--CRLILCANSMSQVIP  105 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~--------------~~~~l~~~i~~~~~~--~~~i~~~~~~~~l~~  105 (287)
                                           +++|||+|.+...              ..+.++..++....+  ..++.++|.++.+.+
T Consensus        82 ~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~  161 (265)
T d1r7ra3          82 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP  161 (265)
T ss_dssp             TTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSC
T ss_pred             ccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCH
Confidence                                 9999999976421              113344444433222  345566677888999


Q ss_pred             HHhc--ccc-eeecCCCCHHHHHHHHHHHHHHh
Q psy2281         106 AIRS--RCL-CIRIPAPTHEEIVSVLTNICKKE  135 (287)
Q Consensus       106 ~l~s--r~~-~~~~~~~~~~~~~~~l~~~~~~~  135 (287)
                      ++++  |+. .+.|+.|+.++..++++..+++.
T Consensus       162 al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~  194 (265)
T d1r7ra3         162 AILRPGRLDQLIYIPLPDEKSRVAILKANLRKS  194 (265)
T ss_dssp             GGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC
T ss_pred             HHhCCCCccEEEEecchHHHHHHHHHHHHhccC
Confidence            9975  674 68999999999999998776643

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.51  E-value=1.2e-17  Score=132.51  Aligned_cols=148  Identities=16%  Similarity=0.151  Sum_probs=92.4

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCC
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMS  101 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~  101 (287)
                      +.++..+++|++  +.|.||||||||||++++++.+.+.  -|.+++.+. .     .++..+.+.+++..      .+.
T Consensus        18 ~~is~~i~~Gei--~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i-~-----~~~~~i~~~~~~~~------~~~   83 (200)
T d1sgwa_          18 ERITMTIEKGNV--VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI-T-----KVKGKIFFLPEEII------VPR   83 (200)
T ss_dssp             EEEEEEEETTCC--EEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG-G-----GGGGGEEEECSSCC------CCT
T ss_pred             eceEEEEcCCCE--EEEECCCCChHHHHHHHHhcccccCCCEEEECCEeh-h-----HhcCcEEEEeeccc------CCC
Confidence            334444578999  9999999999999999999998877  778888653 1     11112222222211      111


Q ss_pred             CC--cHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccc
Q psy2281         102 QV--IPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRNLRR-----AILMCEASKVQQYPFQI  174 (287)
Q Consensus       102 ~l--~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~  174 (287)
                      .+  ...++.... +.-...+.+++.+    .++..++.  + ..+.+.++|+|+.||     |+...+.++++|||+++
T Consensus        84 ~~t~~~~l~~~~~-~~~~~~~~~~~~~----~l~~~~~~--~-~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~g  155 (200)
T d1sgwa_          84 KISVEDYLKAVAS-LYGVKVNKNEIMD----ALESVEVL--D-LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVA  155 (200)
T ss_dssp             TSBHHHHHHHHHH-HTTCCCCHHHHHH----HHHHTTCC--C-TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTT
T ss_pred             CcCHHHHHHHHHH-hcCCccCHHHHHH----HHHHcCCc--c-cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence            11  111111111 1112334444433    34444431  1 224567899999888     55556788999999999


Q ss_pred             ccCccCccHHHHHHHHHHH
Q psy2281         175 DQQIVEPDWKIYIRDTAKL  193 (287)
Q Consensus       175 ~d~~~~~~~~~~i~~l~~~  193 (287)
                      +|+.....+.+.+.++.++
T Consensus       156 LD~~~~~~i~~~l~~~~~~  174 (200)
T d1sgwa_         156 IDEDSKHKVLKSILEILKE  174 (200)
T ss_dssp             SCTTTHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhC
Confidence            9999988888888888765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.38  E-value=2.1e-12  Score=108.93  Aligned_cols=114  Identities=20%  Similarity=0.315  Sum_probs=80.3

Q ss_pred             ccCcHHHHHHHHHHHh-------------cC-CCCcEEEeCCCCCcHHHHHHHHHHHhCCC-------------------
Q psy2281          16 LDFHCKQANHLRNLLK-------------EG-DFPHLLFYGPSGAGKKTRIMALLKELYGP-------------------   62 (287)
Q Consensus        16 ~~~~~~~~~~l~~~~~-------------~g-~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------   62 (287)
                      ++||+++++.+...+.             .+ ...+++|+||||||||++++++++.+..+                   
T Consensus        16 ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~~   95 (309)
T d1ofha_          16 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEV   95 (309)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGST
T ss_pred             ccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeeec
Confidence            6899999988876551             11 12339999999999999999999998644                   


Q ss_pred             ----------------------EEEEeCCCCCCHH------------HHHHHHHHHHhc---cC-------CcEEEEE--
Q psy2281          63 ----------------------VIILNETDHLTRE------------AQQALRRTMEKY---IT-------TCRLILC--   96 (287)
Q Consensus        63 ----------------------~i~ide~d~l~~~------------~~~~l~~~i~~~---~~-------~~~~i~~--   96 (287)
                                            +|++||+|.+.+.            .++.|+..++..   ..       +..++.+  
T Consensus        96 ~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga  175 (309)
T d1ofha_          96 DSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGA  175 (309)
T ss_dssp             THHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEEC
T ss_pred             cccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEeccc
Confidence                                  8999999987532            345566666631   11       1122222  


Q ss_pred             --eCCCCCCcHHHhcccc-eeecCCCCHHHHHHHHH
Q psy2281          97 --ANSMSQVIPAIRSRCL-CIRIPAPTHEEIVSVLT  129 (287)
Q Consensus        97 --~~~~~~l~~~l~sr~~-~~~~~~~~~~~~~~~l~  129 (287)
                        .+.+..+.+.++.|+. .+.|..++..+..+++.
T Consensus       176 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~  211 (309)
T d1ofha_         176 FQVARPSDLIPELQGRLPIRVELTALSAADFERILT  211 (309)
T ss_dssp             CSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred             hhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence              1234568889999995 58899999988887764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.5e-11  Score=103.82  Aligned_cols=136  Identities=24%  Similarity=0.293  Sum_probs=102.3

Q ss_pred             CccCcHHHHHHHHHHHh-------cCCCC--cEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------
Q psy2281          15 KLDFHCKQANHLRNLLK-------EGDFP--HLLFYGPSGAGKKTRIMALLKELYGP-----------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~-------~g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------   62 (287)
                      .++||+++++.+...+.       +...|  .++|+||+|+|||.++++|+..+..+                       
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~g~~~  102 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPP  102 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCS
T ss_pred             eecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhcccCC
Confidence            57899999888877662       11222  28999999999999999999988533                       


Q ss_pred             ---------------------EEEEeCCCCCCHHHHHHHHHHHHh-----------ccCCcEEEEEeCCCC---------
Q psy2281          63 ---------------------VIILNETDHLTREAQQALRRTMEK-----------YITTCRLILCANSMS---------  101 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~~~~~~l~~~i~~-----------~~~~~~~i~~~~~~~---------  101 (287)
                                           ++++||+|..+++.++.|++.++.           .+.++.+++++|...         
T Consensus       103 gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~Tsnig~~~i~~~~~~  182 (315)
T d1r6bx3         103 GYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIG  182 (315)
T ss_dssp             CSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC--------
T ss_pred             CccccccCChhhHHHHhCccchhhhcccccccchHhhhhHHhhccceecCCCCCccCccceEEEeccchhhHHHHhhhcc
Confidence                                 999999999999999999998874           345566777777432         


Q ss_pred             ----------------CCcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHh-------C--CCCCHHHHHHHHHH
Q psy2281         102 ----------------QVIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKE-------G--LTIPPEFALRLAQQ  150 (287)
Q Consensus       102 ----------------~l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~-------~--~~~~~~~~~~l~~~  150 (287)
                                      .+.+.+.+|+. ++.|.+++.+++.+++...+...       +  +.+++++..++++.
T Consensus       183 ~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~~~~~a~~~l~~~  257 (315)
T d1r6bx3         183 LIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEK  257 (315)
T ss_dssp             ---------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHH
T ss_pred             chhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHh
Confidence                            15567788885 68899999999888876655432       2  34577787777754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.6e-12  Score=104.36  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=116.1

Q ss_pred             cccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------
Q psy2281           6 DKYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----------------------   62 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------   62 (287)
                      ++-+-..++.++|.+..++.+...+.....+|++|+||||+|||++++.++..+...                       
T Consensus        10 ~~a~~~~ld~~igRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~   89 (268)
T d1r6bx2          10 QLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGT   89 (268)
T ss_dssp             HHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCC
T ss_pred             HHHHcCCCCcccChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccC
Confidence            344556788899999999999888877777779999999999999999999765211                       


Q ss_pred             -----------------------EEEEeCCCCCCH---------HHHHHHHHHHHhccCCcEEEEEeCCCC-----CCcH
Q psy2281          63 -----------------------VIILNETDHLTR---------EAQQALRRTMEKYITTCRLILCANSMS-----QVIP  105 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~---------~~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~  105 (287)
                                             ++++||++.+..         +..+.|..++.  ..+..+|.++|..+     .-.+
T Consensus        90 ~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~--rg~i~vIgatT~eey~~~~e~d~  167 (268)
T d1r6bx2          90 KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDR  167 (268)
T ss_dssp             CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTT
T ss_pred             ccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh--CCCCeEEEeCCHHHHHHHHhhcH
Confidence                                   888999998731         12233333333  23456676665432     3467


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHH----HHhCCCCCHHHHHHHHHHcCC------cHHHHHHHHHHHh
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNIC----KKEGLTIPPEFALRLAQQSDR------NLRRAILMCEASK  166 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~l~~~s~G------~~r~al~~l~~~~  166 (287)
                      ++.+||..+.+..|+.++..+++....    ...++.+++++++.+.++|..      -..+|+..++..+
T Consensus       168 al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdllDea~  238 (268)
T d1r6bx2         168 ALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAG  238 (268)
T ss_dssp             SSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHH
T ss_pred             HHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCCCcHHHHHHHHHH
Confidence            899999999999999999988887654    345888999999998877642      2345777776654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.29  E-value=2.1e-11  Score=102.73  Aligned_cols=136  Identities=18%  Similarity=0.264  Sum_probs=99.9

Q ss_pred             CccCcHHHHHHHHHHHh-------cCCCC--cEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------
Q psy2281          15 KLDFHCKQANHLRNLLK-------EGDFP--HLLFYGPSGAGKKTRIMALLKELYGP-----------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~-------~g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------   62 (287)
                      .++||.++++.+...+.       ....|  .++|+||+|+|||.+++.++..+.+.                       
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~~L~g  103 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIG  103 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhhhhcC
Confidence            46899988887766552       12223  27899999999999999999987322                       


Q ss_pred             ------------------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCC-------
Q psy2281          63 ------------------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSM-------  100 (287)
Q Consensus        63 ------------------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~-------  100 (287)
                                              +|++||+|..+++.++.|.+.++.-           +.++.+++++|..       
T Consensus       104 ~~~gyvG~~~~~~l~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~~~gr~v~~~~~i~i~tsnlG~~~i~~~  183 (315)
T d1qvra3         104 APPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEG  183 (315)
T ss_dssp             ------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHH
T ss_pred             CCCCCcCcccCChHHHHHHhCCCcEEEEehHhhcCHHHHHHHHHHhccCceeCCCCcEecCcceEEEEecccChHHHhhh
Confidence                                    9999999999999999999988651           2234455555532       


Q ss_pred             -------------------CCCcHHHhcccc-eeecCCCCHHHHHHHHHHHHHHh-------C--CCCCHHHHHHHHHH
Q psy2281         101 -------------------SQVIPAIRSRCL-CIRIPAPTHEEIVSVLTNICKKE-------G--LTIPPEFALRLAQQ  150 (287)
Q Consensus       101 -------------------~~l~~~l~sr~~-~~~~~~~~~~~~~~~l~~~~~~~-------~--~~~~~~~~~~l~~~  150 (287)
                                         +.+.+.+.+|+. ++.|.+++.+++.+++...+.+.       +  +.+++++.+++++.
T Consensus       184 ~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~~~i~l~i~~~~~~~L~~~  262 (315)
T d1qvra3         184 LQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAER  262 (315)
T ss_dssp             HHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred             cccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHh
Confidence                               236778889985 56899999999888876554432       2  34578888888765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=3.4e-16  Score=130.10  Aligned_cols=165  Identities=15%  Similarity=0.104  Sum_probs=97.4

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcHHHh
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIPAIR  108 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~~l~  108 (287)
                      ++|+.  +.|+||||||||||+++|++.+.+.  .|.+|+-              +.+++|...++. .+..+++..+  
T Consensus        60 ~~Ge~--vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~--------------i~~v~Q~~~l~~-~tv~eni~~~--  120 (281)
T d1r0wa_          60 EKGEM--LAITGSTGSGKTSLLMLILGELEASEGIIKHSGR--------------VSFCSQFSWIMP-GTIKENIIFG--  120 (281)
T ss_dssp             CTTCE--EEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC--------------EEEECSSCCCCS-EEHHHHHTTT--
T ss_pred             cCCCE--EEEECCCCChHHHHHHHHhCCCcCCCcEEEECCE--------------EEEEeccccccC-ceeecccccc--
Confidence            57788  9999999999999999999998877  6777761              445555543322 2333333221  


Q ss_pred             cccceeecCCCCHHHHHHHHHHHH---HHhCCCCCHHH----HHHHHHHcCCcHHH-----HHHHHHHHhhcCCCccccc
Q psy2281         109 SRCLCIRIPAPTHEEIVSVLTNIC---KKEGLTIPPEF----ALRLAQQSDRNLRR-----AILMCEASKVQQYPFQIDQ  176 (287)
Q Consensus       109 sr~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~----~~~l~~~s~G~~r~-----al~~l~~~~~~dep~~~~d  176 (287)
                              ...+.......++...   ....+  .+..    .+....+|||+.||     |+...+.++++|||++++|
T Consensus       121 --------~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD  190 (281)
T d1r0wa_         121 --------VSYDEYRYKSVVKACQLQQDITKF--AEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD  190 (281)
T ss_dssp             --------SCCCHHHHHHHHHHTTCHHHHTTS--TTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSC
T ss_pred             --------ccccchHHHHHHHHHHhHHHHHhc--hhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCC
Confidence                    1223333333332210   00111  1100    01122478888777     7777789999999999999


Q ss_pred             CccCccHHHH-HHHHHHH---HHhccChhHHHHHHHHHHHHHhcCC----CHHHHHH
Q psy2281         177 QIVEPDWKIY-IRDTAKL---IISEQSPKKLLEVRTRLYELLVHSI----PVNVLFK  225 (287)
Q Consensus       177 ~~~~~~~~~~-i~~l~~~---i~~~~~~~~~~~~~~~~~~l~~~~~----~~~~i~~  225 (287)
                      +.....+.+. +..+...   |+++|+.+.+ +.+|+++.|-.+.+    +++++.+
T Consensus       191 ~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         191 VFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             HHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECCHHHHhc
Confidence            7765554432 2222222   7789998765 56788774422222    5666654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.23  E-value=3.1e-11  Score=102.73  Aligned_cols=111  Identities=20%  Similarity=0.206  Sum_probs=81.0

Q ss_pred             CCC-CCCCccCcHHHHHHHHHHHh-cCCCCcEEEeCCCCCcHHHHHHHHHHHhC--------------------------
Q psy2281           9 RPN-NLQKLDFHCKQANHLRNLLK-EGDFPHLLFYGPSGAGKKTRIMALLKELY--------------------------   60 (287)
Q Consensus         9 ~p~-~~~~~~~~~~~~~~l~~~~~-~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~--------------------------   60 (287)
                      ||. .|.+++|++.++..+....- .|. .|++|.||||+||||++++++..+.                          
T Consensus         1 ~~~~~f~~I~Gq~~~kral~laa~~~~~-h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (333)
T d1g8pa_           1 RPVFPFSAIVGQEDMKLALLLTAVDPGI-GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS   79 (333)
T ss_dssp             CCCCCGGGSCSCHHHHHHHHHHHHCGGG-CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred             CCCCChhhccCcHHHHHHHHHHHhccCC-CeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccccccchhhccc
Confidence            444 68999999999887665443 222 3599999999999999999987641                          


Q ss_pred             ----------------------------------C--------------CEEEEeCCCCCCHHHHHHHHHHHHhc-----
Q psy2281          61 ----------------------------------G--------------PVIILNETDHLTREAQQALRRTMEKY-----   87 (287)
Q Consensus        61 ----------------------------------~--------------~~i~ide~d~l~~~~~~~l~~~i~~~-----   87 (287)
                                                        +              .++++||++.+.+..+++|+..|+.-     
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~  159 (333)
T d1g8pa_          80 TNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVE  159 (333)
T ss_dssp             CCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEEC
T ss_pred             cCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEEec
Confidence                                              0              09999999999999999999999852     


Q ss_pred             --------cCCcEEEEEeCCC-CCCcHHHhcccce-eecCCCC
Q psy2281          88 --------ITTCRLILCANSM-SQVIPAIRSRCLC-IRIPAPT  120 (287)
Q Consensus        88 --------~~~~~~i~~~~~~-~~l~~~l~sr~~~-~~~~~~~  120 (287)
                              +..+.++.++|.. ..+.+++.+|+.. +.+..+.
T Consensus       160 r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~  202 (333)
T d1g8pa_         160 RDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPR  202 (333)
T ss_dssp             CTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCC
T ss_pred             ccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcc
Confidence                    1223333333332 4589999999953 5665553

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.21  E-value=4.9e-11  Score=96.96  Aligned_cols=122  Identities=18%  Similarity=0.255  Sum_probs=73.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------------EEEEeCCCCCC---------
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP-----------------------------------VIILNETDHLT---------   73 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------------~i~ide~d~l~---------   73 (287)
                      ++|+||||||||++++++|+....+                                   ++++||+|.+.         
T Consensus        43 vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~~~  122 (246)
T d1d2na_          43 VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRF  122 (246)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBC
T ss_pred             EEEECcCCCCHHHHHHHHhhcccccccccccccccccccccchhhhhhhhhhhhhhcccceeehhhhhhHhhhcccccch
Confidence            9999999999999999999997644                                   89999987531         


Q ss_pred             -HHHHHHHHHHHHhccCC--cE-EEEEeCCCCCCcHH-Hhcccc-eeecCCCC-HHHHHHHHHHHHHHhCCCCCHHHHHH
Q psy2281          74 -REAQQALRRTMEKYITT--CR-LILCANSMSQVIPA-IRSRCL-CIRIPAPT-HEEIVSVLTNICKKEGLTIPPEFALR  146 (287)
Q Consensus        74 -~~~~~~l~~~i~~~~~~--~~-~i~~~~~~~~l~~~-l~sr~~-~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~  146 (287)
                       ....+.+...++.....  .. ++.++|.++.+.++ +++||. .+.++.++ .+++.+.+.    ..+ .+++.....
T Consensus       123 ~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~----~~~-~~~~~~~~~  197 (246)
T d1d2na_         123 SNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALE----LLG-NFKDKERTT  197 (246)
T ss_dssp             CHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHH----HHT-CSCHHHHHH
T ss_pred             hHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhcCccceEEecCCchhHHHHHHHHH----hcc-CCChHHHHH
Confidence             22334555555544322  22 34455555555543 667774 46775543 334443332    222 235666666


Q ss_pred             HHHHcCC-----cHHHHHHHHHH
Q psy2281         147 LAQQSDR-----NLRRAILMCEA  164 (287)
Q Consensus       147 l~~~s~G-----~~r~al~~l~~  164 (287)
                      +++...|     .+++++..++.
T Consensus       198 i~~~~~g~~~~~~ik~ll~~ie~  220 (246)
T d1d2na_         198 IAQQVKGKKVWIGIKKLLMLIEM  220 (246)
T ss_dssp             HHHHHTTSEEEECHHHHHHHHHH
T ss_pred             HHHHcCCCccchhHHHHHHHHHH
Confidence            6665554     25666655543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.19  E-value=2.1e-10  Score=98.18  Aligned_cols=136  Identities=21%  Similarity=0.246  Sum_probs=92.6

Q ss_pred             CccCcHHHHHHHHHHHh------------------------------cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--
Q psy2281          15 KLDFHCKQANHLRNLLK------------------------------EGDFPHLLFYGPSGAGKKTRIMALLKELYGP--   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~------------------------------~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--   62 (287)
                      .++||.++++.+...+.                              .....+++|.||+|||||.++++|++.+..+  
T Consensus        18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~i   97 (364)
T d1um8a_          18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA   97 (364)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence            47899998887765441                              1123349999999999999999999887544  


Q ss_pred             --------------------------------------EEEEeCCCCC--------------CHHHHHHHHHHHHhc---
Q psy2281          63 --------------------------------------VIILNETDHL--------------TREAQQALRRTMEKY---   87 (287)
Q Consensus        63 --------------------------------------~i~ide~d~l--------------~~~~~~~l~~~i~~~---   87 (287)
                                                            ++++||++..              .+..++.|++.++.-   
T Consensus        98 r~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~  177 (364)
T d1um8a_          98 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN  177 (364)
T ss_dssp             EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred             ehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCceec
Confidence                                                  8999999873              345688899888831   


Q ss_pred             ----------cCCcEEEEEeCC-------------------------------------------------CCCCcHHHh
Q psy2281          88 ----------ITTCRLILCANS-------------------------------------------------MSQVIPAIR  108 (287)
Q Consensus        88 ----------~~~~~~i~~~~~-------------------------------------------------~~~l~~~l~  108 (287)
                                +.+...+.+.+.                                                 ...+.|.+.
T Consensus       178 ~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~  257 (364)
T d1um8a_         178 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI  257 (364)
T ss_dssp             ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred             cCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHHH
Confidence                      111112222111                                                 001456788


Q ss_pred             cccc-eeecCCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHH
Q psy2281         109 SRCL-CIRIPAPTHEEIVSVLTN-----------ICKKEGL--TIPPEFALRLAQQ  150 (287)
Q Consensus       109 sr~~-~~~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~  150 (287)
                      .|+. ++.|.+++.+++.+++..           .++..|+  .+++++.+++++.
T Consensus       258 gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~  313 (364)
T d1um8a_         258 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQL  313 (364)
T ss_dssp             TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred             HHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence            8885 588999999999888853           2333455  4689999998864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=8e-11  Score=101.47  Aligned_cols=157  Identities=19%  Similarity=0.272  Sum_probs=110.9

Q ss_pred             CCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC----CC----------------------
Q psy2281           9 RPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY----GP----------------------   62 (287)
Q Consensus         9 ~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~----~~----------------------   62 (287)
                      +--.++.++|....+..+-.++.....+|.+|+||||+|||+++..++..+.    +.                      
T Consensus        17 ~~g~ld~~~gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~   96 (387)
T d1qvra2          17 AEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR   96 (387)
T ss_dssp             HTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred             HcCCCCCCcCcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcc
Confidence            4456788999998888888888666666689999999999999988886542    11                      


Q ss_pred             ---------------------EEEEeCCCCCCH--------HHHHHHHHHHHhccCCcEEEEEeCCCC----CCcHHHhc
Q psy2281          63 ---------------------VIILNETDHLTR--------EAQQALRRTMEKYITTCRLILCANSMS----QVIPAIRS  109 (287)
Q Consensus        63 ---------------------~i~ide~d~l~~--------~~~~~l~~~i~~~~~~~~~i~~~~~~~----~l~~~l~s  109 (287)
                                           ++||||++.+-.        ++.+.|..++..  ...++|.++|..+    .-.+++.+
T Consensus        97 g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r--g~~~~I~~tT~~ey~~~e~d~al~r  174 (387)
T d1qvra2          97 GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATTLDEYREIEKDPALER  174 (387)
T ss_dssp             -CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEECHHHHHHHTTCTTTCS
T ss_pred             hhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC--CCcceeeecCHHHHHHhcccHHHHH
Confidence                                 789999998732        233456666664  3566777776432    12568889


Q ss_pred             ccceeecCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcC------CcHHHHHHHHHHHhh
Q psy2281         110 RCLCIRIPAPTHEEIVSVLTNICKK----EGLTIPPEFALRLAQQSD------RNLRRAILMCEASKV  167 (287)
Q Consensus       110 r~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~s~------G~~r~al~~l~~~~~  167 (287)
                      ||+.+.+..|+.++...++......    .++.++++++..++++|.      .-..+|+..++..+.
T Consensus       175 rF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a~a  242 (387)
T d1qvra2         175 RFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAA  242 (387)
T ss_dssp             CCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHH
T ss_pred             hcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChhhHHHHHHHHHH
Confidence            9999999999999999888876544    488899999999988763      334458888876543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=4.6e-11  Score=92.60  Aligned_cols=120  Identities=13%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             ccCCCCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC------------------------
Q psy2281           7 KYRPNNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP------------------------   62 (287)
Q Consensus         7 k~~p~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~------------------------   62 (287)
                      +-+...++.++|.+..++.+...+.....+|++|+||||+|||++++.++..+...                        
T Consensus        15 ~a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~   94 (195)
T d1jbka_          15 RAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK   94 (195)
T ss_dssp             HHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTC
T ss_pred             HHHcCCCCCCcCcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCC
Confidence            44566788899999999999888877667779999999999999999998765311                        


Q ss_pred             -----------------------EEEEeCCCCCCHH--------HHHHHHHHHHhccCCcEEEEEeCCCC-----CCcHH
Q psy2281          63 -----------------------VIILNETDHLTRE--------AQQALRRTMEKYITTCRLILCANSMS-----QVIPA  106 (287)
Q Consensus        63 -----------------------~i~ide~d~l~~~--------~~~~l~~~i~~~~~~~~~i~~~~~~~-----~l~~~  106 (287)
                                             +++|||++.+-..        ..+.|..+++.  ....+|.+++..+     .-.++
T Consensus        95 ~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r--g~l~~IgatT~eey~~~~e~d~a  172 (195)
T d1jbka_          95 YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAA  172 (195)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTTCHH
T ss_pred             ccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC--CCceEEecCCHHHHHHHHHcCHH
Confidence                                   8899999886422        23556667774  3566777766432     24778


Q ss_pred             HhcccceeecCCCCHHHHHHHH
Q psy2281         107 IRSRCLCIRIPAPTHEEIVSVL  128 (287)
Q Consensus       107 l~sr~~~~~~~~~~~~~~~~~l  128 (287)
                      +.+||..+.+..|+.++...++
T Consensus       173 L~rrF~~I~V~Ep~~e~t~~IL  194 (195)
T d1jbka_         173 LERRFQKVFVAEPSVEDTIAIL  194 (195)
T ss_dssp             HHTTEEEEECCCCCHHHHHTTC
T ss_pred             HHhcCCEeecCCCCHHHHHHHh
Confidence            9999999999999988776543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.11  E-value=2.3e-09  Score=86.93  Aligned_cols=152  Identities=20%  Similarity=0.185  Sum_probs=104.1

Q ss_pred             ccCcHHHHHHHHHHH----hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC-----------------------------
Q psy2281          16 LDFHCKQANHLRNLL----KEGDFPHLLFYGPSGAGKKTRIMALLKELYGP-----------------------------   62 (287)
Q Consensus        16 ~~~~~~~~~~l~~~~----~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~-----------------------------   62 (287)
                      ++|+....+.+...+    ..+..  ++|+||+||||+++|++|.......                             
T Consensus         2 ~v~~S~~~~~~~~~~~~~a~~~~p--vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~~   79 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKKISCAECP--VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAF   79 (247)
T ss_dssp             CCCCSHHHHHHHHHHHHHTTCCSC--EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSS
T ss_pred             eEecCHHHHHHHHHHHHHhCCCCC--EEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhcCcccCCc
Confidence            556554444433333    44444  9999999999999999996432111                             


Q ss_pred             -----------------EEEEeCCCCCCHHHHHHHHHHHHhc-----------cCCcEEEEEeCCC-------CCCcHHH
Q psy2281          63 -----------------VIILNETDHLTREAQQALRRTMEKY-----------ITTCRLILCANSM-------SQVIPAI  107 (287)
Q Consensus        63 -----------------~i~ide~d~l~~~~~~~l~~~i~~~-----------~~~~~~i~~~~~~-------~~l~~~l  107 (287)
                                       ++++||+|.++...|..|.+.++.-           ..++++|++++..       ..+.+.+
T Consensus        80 ~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L  159 (247)
T d1ny5a2          80 TGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDL  159 (247)
T ss_dssp             TTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred             CCcccccCCHHHccCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCcHHH
Confidence                             7899999999999999999988742           1245677777653       1355566


Q ss_pred             hcccc--eeecCCCC--HHHHHHHHHHHH----HHhCC---CCCHHHHHHHHHHc-CCcHHHHHHHHHHHhhcC
Q psy2281         108 RSRCL--CIRIPAPT--HEEIVSVLTNIC----KKEGL---TIPPEFALRLAQQS-DRNLRRAILMCEASKVQQ  169 (287)
Q Consensus       108 ~sr~~--~~~~~~~~--~~~~~~~l~~~~----~~~~~---~~~~~~~~~l~~~s-~G~~r~al~~l~~~~~~d  169 (287)
                      ..|+.  .+.++++.  .+++...+...+    .+.+.   .+++++.+.+..++ .|++++.-+.++.+++..
T Consensus       160 ~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~~~WPGNl~EL~~~l~~a~~~~  233 (247)
T d1ny5a2         160 YYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS  233 (247)
T ss_dssp             HHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC
T ss_pred             HhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence            66664  45666663  456655555444    44443   35899999998877 899999888888777654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.92  E-value=2e-09  Score=91.92  Aligned_cols=125  Identities=17%  Similarity=0.100  Sum_probs=75.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC----------------------EEEEeCCCCCC-----------HHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP----------------------VIILNETDHLT-----------REAQQALRRTM   84 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------~i~ide~d~l~-----------~~~~~~l~~~i   84 (287)
                      ++|+||||||||++++++++.+.++                      +.++|+++...           -+..+.++..+
T Consensus       157 ~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l~~~~  236 (362)
T d1svma_         157 WLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYL  236 (362)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhhccccc
Confidence            9999999999999999999999755                      56677775432           11223334333


Q ss_pred             Hhcc--------------CCcEEEEEeCCCC-CCcHHHhcccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHH-HHH
Q psy2281          85 EKYI--------------TTCRLILCANSMS-QVIPAIRSRCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFAL-RLA  148 (287)
Q Consensus        85 ~~~~--------------~~~~~i~~~~~~~-~l~~~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~  148 (287)
                      +-..              ..++++++||... .+..++|.++.++.+.++.......++..+++++.+..+.+.+. .+.
T Consensus       237 dg~~~~~~~~~~~~~~~~~~~p~i~ttN~~~~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~  316 (362)
T d1svma_         237 DGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIW  316 (362)
T ss_dssp             HCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHH
T ss_pred             CCcchhhhhhhhhchhhhccCCceeecccccccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHcc
Confidence            3210              1124677777543 23333344444444444444555667778888888876555543 345


Q ss_pred             HHcCCcHHHHHHHH
Q psy2281         149 QQSDRNLRRAILMC  162 (287)
Q Consensus       149 ~~s~G~~r~al~~l  162 (287)
                      ..+++|++..++..
T Consensus       317 ~~s~~D~~~~i~~~  330 (362)
T d1svma_         317 YRPVAEFAQSIQSR  330 (362)
T ss_dssp             HSCGGGSCGGGHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            66777777655544

>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.88  E-value=1.6e-08  Score=69.14  Aligned_cols=86  Identities=19%  Similarity=0.308  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHhhHHhcCCChHHH
Q psy2281         186 YIRDTAKLIISEQSPKKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA-NCDSDLKSKSIEMAAMFEHRIHKGSKPIFH  263 (287)
Q Consensus       186 ~i~~l~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~  263 (287)
                      .+.++.+.++.    .++.+.+..+.+++ ..|+++.+|+.+++..+.+ .+++..+..+++.++++++|+..|+++++|
T Consensus         6 ~I~~il~~~l~----~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~~~~~~~~k~~ll~~la~~d~rL~~G~~e~iQ   81 (95)
T d1iqpa1           6 DIREMMLLALK----GNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEPKKVLLADKIGEYNFRLVEGANEIIQ   81 (95)
T ss_dssp             HHHHHHHHHHH----TCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGSSSCHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            35555555544    36777778888875 5799999999999998876 788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2281         264 IEAYVASFMAMY  275 (287)
Q Consensus       264 l~~~i~~~~~~~  275 (287)
                      |+++++++..+-
T Consensus        82 L~alla~~~~i~   93 (95)
T d1iqpa1          82 LEALLAQFTLIG   93 (95)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.87  E-value=4.8e-09  Score=85.88  Aligned_cols=144  Identities=17%  Similarity=0.192  Sum_probs=92.4

Q ss_pred             CCCCCccCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC----------------------------
Q psy2281          11 NNLQKLDFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP----------------------------   62 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------   62 (287)
                      .+-++++|....++.+...  .+  ++++++||+|+|||++++.++......                            
T Consensus         9 ~~~~~f~GR~~el~~l~~~--~~--~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~   84 (283)
T d2fnaa2           9 DNRKDFFDREKEIEKLKGL--RA--PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEI   84 (283)
T ss_dssp             CSGGGSCCCHHHHHHHHHT--CS--SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred             CChhhCCChHHHHHHHHhc--cC--CEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccccccHHHHHHHHHHHh
Confidence            4678999999888877653  23  349999999999999999998766432                            


Q ss_pred             ------------------------------------------------------EEEEeCCCCCCHHH----HHHHHHHH
Q psy2281          63 ------------------------------------------------------VIILNETDHLTREA----QQALRRTM   84 (287)
Q Consensus        63 ------------------------------------------------------~i~ide~d~l~~~~----~~~l~~~i   84 (287)
                                                                            ++++||.+.+....    ...++...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~~~~~~~l~~~~  164 (283)
T d2fnaa2          85 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAY  164 (283)
T ss_dssp             HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccchHHHHHHHHHHH
Confidence                                                                  67788776543211    22233333


Q ss_pred             HhccCCcEEEEEeCCCCC---------CcHHHhc-ccceeecCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCc
Q psy2281          85 EKYITTCRLILCANSMSQ---------VIPAIRS-RCLCIRIPAPTHEEIVSVLTNICKKEGLTIPPEFALRLAQQSDRN  154 (287)
Q Consensus        85 ~~~~~~~~~i~~~~~~~~---------l~~~l~s-r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~s~G~  154 (287)
                      ... .....+++++....         ...++.. +...+.+.+++.++..+.+.+.+...++..+  ..+.+.+.++|.
T Consensus       165 ~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~--~~~~i~~~~~G~  241 (283)
T d2fnaa2         165 DNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--DYEVVYEKIGGI  241 (283)
T ss_dssp             HHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--CHHHHHHHHCSC
T ss_pred             Hhh-hhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHH--HHHHHHHHhCCC
Confidence            322 23344444433211         0111111 2345778899999999999998888888543  467889999997


Q ss_pred             HHHHHHHH
Q psy2281         155 LRRAILMC  162 (287)
Q Consensus       155 ~r~al~~l  162 (287)
                      .. .+...
T Consensus       242 P~-~L~~~  248 (283)
T d2fnaa2         242 PG-WLTYF  248 (283)
T ss_dssp             HH-HHHHH
T ss_pred             HH-HHHHH
Confidence            65 34333

>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=1.1e-08  Score=69.39  Aligned_cols=84  Identities=11%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHhhHHhcCCChHHH
Q psy2281         186 YIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA--NCDSDLKSKSIEMAAMFEHRIHKGSKPIFH  263 (287)
Q Consensus       186 ~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~  263 (287)
                      .+.++.+.+..    +.+....+.+.+++..|++..+|+.+++.++..  .+++..+..++..+++++.|+..|+++++|
T Consensus         5 ~i~~il~~~~~----~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv~~~~i~~~~k~~i~~~la~~d~rL~~G~~e~lQ   80 (91)
T d1sxjd1           5 ILIEIVEKVKS----GDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQ   80 (91)
T ss_dssp             HHHHHHHHHHS----CCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            45556555544    356677777778888999999999999998765  578999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy2281         264 IEAYVASFMA  273 (287)
Q Consensus       264 l~~~i~~~~~  273 (287)
                      |.+++++++.
T Consensus        81 L~~lla~i~~   90 (91)
T d1sxjd1          81 LLNLLVKISQ   90 (91)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999999875

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.77  E-value=6.3e-09  Score=79.62  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|+||||||||||++++++.+.++
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            7999999999999999999988643

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.72  E-value=1.2e-08  Score=85.08  Aligned_cols=87  Identities=16%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC----------------------------------EEEEeCCCCCCHHH-------
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP----------------------------------VIILNETDHLTREA-------   76 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~----------------------------------~i~ide~d~l~~~~-------   76 (287)
                      ++++||||||||.+++++++++...                                  ++||||+|.+....       
T Consensus       126 ~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~~~ilf~DEid~~~~~r~~~~~~~  205 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSG  205 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC----------
T ss_pred             EEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhhccEEEeehhhhhccccccCCCCC
Confidence            6779999999999999999987421                                  99999999875321       


Q ss_pred             -----HHHHHHHHHhccC-CcEEEEEeCCCCCCcHHHh------ccc-ceeecCCCCHHHH
Q psy2281          77 -----QQALRRTMEKYIT-TCRLILCANSMSQVIPAIR------SRC-LCIRIPAPTHEEI  124 (287)
Q Consensus        77 -----~~~l~~~i~~~~~-~~~~i~~~~~~~~l~~~l~------sr~-~~~~~~~~~~~~~  124 (287)
                           .+.++..|+-... ...+++.+|++..+.+++.      .|+ ..+.+..|+.+..
T Consensus       206 ~~~r~v~~lL~e~dg~~~~~~v~viaatN~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r  266 (321)
T d1w44a_         206 GISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEASRSNSTSLVISTDVDGE  266 (321)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTCEEEEECCCCCCCHHHHHHHHHHHHHSCSEEEEECSSTTE
T ss_pred             cchhhhhhhhhhccccccCCCeEEEEeCCCcccccchhhhhhccCcccceeecCCCChHHH
Confidence                 2345555553322 2356666666655555443      244 2344555554443

>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=1.5e-07  Score=63.72  Aligned_cols=73  Identities=10%  Similarity=0.070  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHH
Q psy2281         202 KLLEVRTRLYEL-LVHSIPVNVLFKYLLEGLLA--NCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAM  274 (287)
Q Consensus       202 ~~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~  274 (287)
                      .+.+..+.+.++ ...|++..+|+.+++.++.+  .+++..+..+++.++++++|+..|+++++||+++++++..+
T Consensus        14 ~f~~a~~~l~~~l~~~Gys~~DIi~~l~~~i~~~~~~~e~~k~~il~~la~~~~rl~~G~~e~lQL~~lla~i~~i   89 (92)
T d1sxjb1          14 NLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKL   89 (92)
T ss_dssp             SHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            455566666664 46899999999999999976  56788999999999999999999999999999999998765

>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=2.6e-07  Score=62.99  Aligned_cols=85  Identities=14%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHH-hC-ChHHHHHHHHHHHHHhhHHhcCCChHH
Q psy2281         186 YIRDTAKLIISEQSPKKLLEVRTRLYELL-VHSIPVNVLFKYLLEGLLA-NC-DSDLKSKSIEMAAMFEHRIHKGSKPIF  262 (287)
Q Consensus       186 ~i~~l~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~g~~~~~  262 (287)
                      .|.++.+.++..    .+......+.+++ ..|+++.+|+.+++.++.+ .. ++..+..+++.+++.+.|+..|+++.+
T Consensus         5 ~I~~il~~~l~~----~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~~~~~~~~~k~~ll~~la~~e~rL~~G~~e~l   80 (95)
T d1sxjc1           5 DLKAVLKSILED----DWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKLADIEYSISKGGNDQI   80 (95)
T ss_dssp             HHHHHHHHHHTS----CHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHhC----CHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHcCCCcHH
Confidence            355666665553    5777777788775 5699999999999998877 33 456789999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2281         263 HIEAYVASFMAM  274 (287)
Q Consensus       263 ~l~~~i~~~~~~  274 (287)
                      ||.++++.+...
T Consensus        81 QL~~lla~~~~~   92 (95)
T d1sxjc1          81 QGSAVIGAIKAS   92 (95)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.60  E-value=1.7e-06  Score=75.31  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=37.9

Q ss_pred             CccCcHHHHHHHHHHHh------------cCC--CCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          15 KLDFHCKQANHLRNLLK------------EGD--FPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~------------~g~--~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      .++||.++++.+.-.+.            +.+  ..|++++||+|||||.+++.||+.+..+
T Consensus        15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VP   76 (443)
T d1g41a_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP   76 (443)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            36899999888877661            111  2249999999999999999999988655

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.45  E-value=7.1e-08  Score=78.64  Aligned_cols=48  Identities=29%  Similarity=0.526  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHH---hcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          20 CKQANHLRNLL---KEGDFPH-LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        20 ~~~~~~l~~~~---~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ......+....   ..+..|. ++|+|||||||||+++++++.+..+.+.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~   64 (273)
T d1gvnb_          13 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID   64 (273)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred             HHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEe
Confidence            33344444444   2344454 899999999999999999999987766665

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.38  E-value=7.5e-07  Score=68.34  Aligned_cols=96  Identities=21%  Similarity=0.359  Sum_probs=62.1

Q ss_pred             HHHHHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--------------------EEEEeCCCCCCHHHHHH-H
Q psy2281          23 ANHLRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP--------------------VIILNETDHLTREAQQA-L   80 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--------------------~i~ide~d~l~~~~~~~-l   80 (287)
                      ...++.+++..--.+ ++|+||+++|||+++.+|++.+.+.                    ++++||+......-.+. +
T Consensus        40 l~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~~N~~s~F~Lq~l~~~kv~l~dD~t~~~~~~~d~~l  119 (205)
T d1tuea_          40 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYM  119 (205)
T ss_dssp             HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSSCGGGGGGTTCSSEEEEEECHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEeccCCCCCcccccccCCeEEEEeccccchHHHHHHHH
Confidence            455666663221122 8999999999999999999998754                    88888875433222222 3


Q ss_pred             HHHHHh-----------c--cCCcEEEEEeCCC---CCCcHHHhcccceeecCC
Q psy2281          81 RRTMEK-----------Y--ITTCRLILCANSM---SQVIPAIRSRCLCIRIPA  118 (287)
Q Consensus        81 ~~~i~~-----------~--~~~~~~i~~~~~~---~~l~~~l~sr~~~~~~~~  118 (287)
                      +..++-           +  ..-+.+++++|..   +.-..++.||..++.|+.
T Consensus       120 K~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~~~~d~~~~L~sRi~~f~F~~  173 (205)
T d1tuea_         120 RNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEFPN  173 (205)
T ss_dssp             HHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEECCS
T ss_pred             HhccCCCeeeeecccCCcccccCCCEEEEcCCCCCccccchhhhheEEEEECCC
Confidence            444442           0  0123567777764   234568999999888864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.32  E-value=1.2e-06  Score=71.76  Aligned_cols=139  Identities=14%  Similarity=0.154  Sum_probs=81.1

Q ss_pred             CccCcHHHHHHHHHHHhc-CCCC--cEEEeCCCCCcHHHHHHHHHHHhCC------C-----------------------
Q psy2281          15 KLDFHCKQANHLRNLLKE-GDFP--HLLFYGPSGAGKKTRIMALLKELYG------P-----------------------   62 (287)
Q Consensus        15 ~~~~~~~~~~~l~~~~~~-g~~~--~~~l~Gp~G~GKTtl~~~l~~~~~~------~-----------------------   62 (287)
                      +++|.+..++.+...+.+ +..+  .+.|+|+.|+||||||+.+.+....      +                       
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~~~~~~~  100 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDIL  100 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHHHHHHHH
Confidence            356777777666666532 2221  2789999999999999998765321      1                       


Q ss_pred             -------------------------------------EEEEeCCCCCCHHHHHHHHHHHHhccCCcEEEEEeCCCCCCcH
Q psy2281          63 -------------------------------------VIILNETDHLTREAQQALRRTMEKYITTCRLILCANSMSQVIP  105 (287)
Q Consensus        63 -------------------------------------~i~ide~d~l~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~l~~  105 (287)
                                                           ++++|++..  .....    .+.  ...+++++++ ...++..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~--~~~~~----~~~--~~~srilvTT-R~~~v~~  171 (277)
T d2a5yb3         101 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQ--EETIR----WAQ--ELRLRCLVTT-RDVEISN  171 (277)
T ss_dssp             HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECC--HHHHH----HHH--HTTCEEEEEE-SBGGGGG
T ss_pred             HHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhH--Hhhhh----hhc--ccCceEEEEe-ehHHHHH
Confidence                                                 455555442  11111    111  1234555544 4445555


Q ss_pred             HHhcccceeecCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCcHHHHHHHHH
Q psy2281         106 AIRSRCLCIRIPAPTHEEIVSVLTNICKKEGL-TIPPEFALRLAQQSDRNLRRAILMCE  163 (287)
Q Consensus       106 ~l~sr~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~s~G~~r~al~~l~  163 (287)
                      ...+.+..+...+++.++..+.+....-.... .-.++..+.+++.++|. --|+..+-
T Consensus       172 ~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~Gl-PLAl~~ig  229 (277)
T d2a5yb3         172 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PATLMMFF  229 (277)
T ss_dssp             GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred             hcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCC-HHHHHHHH
Confidence            55556667889999999988877553211111 11234567788899994 45555543

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.32  E-value=1.9e-06  Score=63.49  Aligned_cols=24  Identities=29%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++++|||||||||+++.|+....+
T Consensus         5 Iii~G~pGsGKTTla~~L~~~~~~   28 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAKNPG   28 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            789999999999999998776543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=7.7e-07  Score=67.64  Aligned_cols=23  Identities=39%  Similarity=0.634  Sum_probs=21.6

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      |++|+|||||||||+++.++..+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            59999999999999999999887

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.17  E-value=3.9e-07  Score=68.69  Aligned_cols=28  Identities=29%  Similarity=0.344  Sum_probs=25.1

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          35 FPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        35 ~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      .|.++|+|||||||||+++.|+..+..+
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~~~   31 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSGLK   31 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence            4669999999999999999999998765

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=2.4e-06  Score=64.12  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=25.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      ++|.|||||||||+++.|++.+....+..|.
T Consensus         9 ivl~G~~GsGKsT~a~~La~~l~~~~~~~d~   39 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDF   39 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHTCEEEEGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeechhh
Confidence            7899999999999999999998765444443

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.07  E-value=7e-07  Score=67.48  Aligned_cols=34  Identities=32%  Similarity=0.418  Sum_probs=29.0

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      |++  ++|.|||||||||+++.+++.+..+.+.+|.
T Consensus         4 g~i--I~l~G~~GsGKSTia~~La~~lg~~~~~~~~   37 (176)
T d1zp6a1           4 GNI--LLLSGHPGSGKSTIAEALANLPGVPKVHFHS   37 (176)
T ss_dssp             TEE--EEEEECTTSCHHHHHHHHHTCSSSCEEEECT
T ss_pred             CeE--EEEECCCCCCHHHHHHHHHHHhCCCEEEecH
Confidence            455  8999999999999999999988777777763

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=1.2e-06  Score=65.18  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=23.6

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      +++|+||+||||||+++.|+..+..+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~   29 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNME   29 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            48999999999999999999998754

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.04  E-value=7.4e-06  Score=61.68  Aligned_cols=25  Identities=24%  Similarity=0.264  Sum_probs=23.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|+|||||||||+++.++..+..+
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~   29 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYE   29 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            8899999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.98  E-value=1.6e-06  Score=65.97  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=23.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.||+||||||++++|+..+..+
T Consensus        10 I~i~G~~GsGKTTla~~La~~~~~~   34 (192)
T d1lw7a2          10 VAILGGESSGKSVLVNKLAAVFNTT   34 (192)
T ss_dssp             EEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCC
Confidence            8999999999999999999988753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.98  E-value=1.1e-05  Score=61.99  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|||||||||+++.|+..+..
T Consensus         9 I~i~G~pGSGKsT~a~~La~~~g~   32 (194)
T d1qf9a_           9 VFVLGGPGSGKGTQCANIVRDFGW   32 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCC
Confidence            789999999999999999998764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.6e-05  Score=60.74  Aligned_cols=23  Identities=48%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|+|+|||||||+++.|+..+.
T Consensus        22 I~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          22 VWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999998874

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.96  E-value=3.2e-06  Score=63.60  Aligned_cols=30  Identities=27%  Similarity=0.386  Sum_probs=25.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|.|||||||||++++|++.+....+.+|
T Consensus         6 I~l~G~~GsGKsTva~~L~~~l~~~~~~~~   35 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFG   35 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSSSCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeEEee
Confidence            889999999999999999999876544443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.95  E-value=2.4e-05  Score=63.25  Aligned_cols=80  Identities=15%  Similarity=0.213  Sum_probs=53.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC-------------------EEEEeCCCCCCHHHHHHHHHHHHh------------
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP-------------------VIILNETDHLTREAQQALRRTMEK------------   86 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~-------------------~i~ide~d~l~~~~~~~l~~~i~~------------   86 (287)
                      ++|+||+++|||+++.+|+..+...                   ++++||...-. ...+.+...++-            
T Consensus       107 ~~l~G~~~tGKS~f~~~i~~~lg~~~~~~~~~~~f~l~~l~~k~~~~~~e~~~~~-~~~~~~K~l~gGd~i~v~~K~k~~  185 (267)
T d1u0ja_         107 IWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNENFPFNDCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSS  185 (267)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSCEEECCTTCSSCTTGGGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------C
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcchhhccccCCCccccccCCCEEEEEeCCCccc-cHHHHHHHhcCCCceEeecccCCC
Confidence            8999999999999999999988421                   88899976422 222334443331            


Q ss_pred             --ccCCcEEEEEeCCCCCC----------cHHHhcccceeecCC
Q psy2281          87 --YITTCRLILCANSMSQV----------IPAIRSRCLCIRIPA  118 (287)
Q Consensus        87 --~~~~~~~i~~~~~~~~l----------~~~l~sr~~~~~~~~  118 (287)
                        ..+.+.++.+++....+          ..++++|...+.|..
T Consensus       186 ~~~~~~p~li~s~n~i~~~~~~~~~~~~~~~~l~~R~~~~~F~~  229 (267)
T d1u0ja_         186 AQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTR  229 (267)
T ss_dssp             CEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCS
T ss_pred             cEeeCCeEEEEeCCCcccccCCCccccccchHhhhhEEEEECCC
Confidence              22334555655554432          468999998887754

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.95  E-value=2.7e-06  Score=63.82  Aligned_cols=29  Identities=31%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKELYGPVI   64 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i   64 (287)
                      |.++|+|++||||||+++.++..+..+.+
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fi   30 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLL   30 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            56889999999999999999999986533

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.94  E-value=1.9e-06  Score=65.18  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|+|+|||||||++++|+..+.
T Consensus         9 I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           9 IFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh
Confidence            78999999999999999998874

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=7.1e-06  Score=62.01  Aligned_cols=31  Identities=26%  Similarity=0.135  Sum_probs=23.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide   68 (287)
                      ++++|+|||||||+++.++.......|-.|+
T Consensus        17 iil~G~pGsGKST~a~~l~~~~~~~~i~~D~   47 (172)
T d1yj5a2          17 VVAVGFPGAGKSTFIQEHLVSAGYVHVNRDT   47 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHTGGGTCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCEEEchHH
Confidence            8899999999999999987766543333343

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3e-06  Score=63.46  Aligned_cols=25  Identities=40%  Similarity=0.522  Sum_probs=22.6

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      |.++|+|++|||||||++.|++.+.
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5689999999999999999998764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.88  E-value=3.4e-06  Score=63.46  Aligned_cols=24  Identities=33%  Similarity=0.542  Sum_probs=22.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|+|||||||||+++.|+..+..
T Consensus         8 I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           8 ILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHhCC
Confidence            899999999999999999998764

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.8e-05  Score=59.53  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=22.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|||||||||.++.|+..+..
T Consensus         4 I~i~GppGSGKsT~a~~La~~~g~   27 (194)
T d1teva_           4 VFVLGGPGAGKGTQCARIVEKYGY   27 (194)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            789999999999999999998863

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.88  E-value=3.4e-06  Score=63.19  Aligned_cols=25  Identities=32%  Similarity=0.522  Sum_probs=22.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.|||||||||+++.|++.+...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~~~~~   29 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQLDNS   29 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCC
Confidence            7899999999999999999987653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=3.1e-05  Score=59.87  Aligned_cols=25  Identities=24%  Similarity=0.325  Sum_probs=22.1

Q ss_pred             Cc-EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          36 PH-LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        36 ~~-~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      |. ++++|.||+||||+++.|++.+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            55 78999999999999999998764

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.77  E-value=7.2e-06  Score=61.22  Aligned_cols=26  Identities=38%  Similarity=0.450  Sum_probs=23.4

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      +++|+|+|||||||+++.|+..+..+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~   27 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLV   27 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            48899999999999999999999754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.9e-05  Score=64.12  Aligned_cols=33  Identities=27%  Similarity=0.284  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281          21 KQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        21 ~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~   56 (287)
                      ....++...+. +.+  .+|+|||||||||++..+.
T Consensus       152 ~Q~~A~~~al~-~~~--~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         152 WQKVAAAVALT-RRI--SVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             HHHHHHHHHHT-BSE--EEEECCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCe--EEEEcCCCCCceehHHHHH
Confidence            44555665554 345  8999999999999875543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.75  E-value=5.8e-05  Score=57.16  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.|||||||||.++.|+..+...
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~   27 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTP   27 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCc
Confidence            7899999999999999999998754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=9.2e-05  Score=57.32  Aligned_cols=27  Identities=44%  Similarity=0.637  Sum_probs=23.4

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +|.+  ++|+||||+||||+.+.|+....
T Consensus         1 ~G~l--ivi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTL--YIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCE--EEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCeE--EEEECCCCCCHHHHHHHHHhhCC
Confidence            4666  89999999999999999988754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.69  E-value=9.6e-06  Score=62.08  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=22.8

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      .++|.|||||||||+++.|+..++.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~~   29 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQL   29 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCC
Confidence            3899999999999999999998874

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=9e-05  Score=55.97  Aligned_cols=25  Identities=44%  Similarity=0.704  Sum_probs=22.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.|||||||||+++.|+..+...
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g~~   27 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLGIP   27 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCc
Confidence            7899999999999999999998754

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=1.1e-05  Score=62.13  Aligned_cols=30  Identities=30%  Similarity=0.474  Sum_probs=25.0

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      |-++|.|||||||||+++.|+..+.  ..+|+
T Consensus         9 ~iI~i~GppGSGKsT~a~~La~~~g--~~~is   38 (196)
T d1ukza_           9 SVIFVLGGPGAGKGTQCEKLVKDYS--FVHLS   38 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS--CEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC--CeEEe
Confidence            3388999999999999999999886  34454

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=8e-05  Score=56.28  Aligned_cols=24  Identities=33%  Similarity=0.598  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|||||||||+++.|+..+..
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~   28 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHA   28 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            788999999999999999998864

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.65  E-value=2.9e-05  Score=55.69  Aligned_cols=21  Identities=38%  Similarity=0.445  Sum_probs=16.9

Q ss_pred             HhcCCCCcEEEeCCCCCcHHHHH
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKTRI   52 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTtl~   52 (287)
                      +++|+.  ++|.+|+|+|||..+
T Consensus         4 l~~~~~--~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMT--TVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCE--EEECCCTTSSTTTTH
T ss_pred             HHcCCc--EEEEcCCCCChhHHH
Confidence            355666  899999999999665

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.64  E-value=1.5e-05  Score=60.36  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=22.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.|||||||||.++.|+..+...
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~   27 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIP   27 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCc
Confidence            7899999999999999999998753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.64  E-value=3.9e-05  Score=63.77  Aligned_cols=50  Identities=18%  Similarity=0.372  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCC
Q psy2281          20 CKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP--VIILNETDH   71 (287)
Q Consensus        20 ~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~   71 (287)
                      ......+...++.+..  +++.||.|+||||+++++++...+.  ++.|.+..-
T Consensus       153 ~~~~~~l~~~v~~~~n--ili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~E  204 (323)
T d1g6oa_         153 EQAISAIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE  204 (323)
T ss_dssp             HHHHHHHHHHHHHTCC--EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCC
T ss_pred             HHHHHHHHHHHHhCCC--EEEEeeccccchHHHHHHhhhcccccceeeccchhh
Confidence            4556778888888777  9999999999999999999987655  777776543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.62  E-value=0.00019  Score=53.60  Aligned_cols=34  Identities=18%  Similarity=0.353  Sum_probs=25.3

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ..+..++.+.++ .++++|.+|+|||||++.+.+.
T Consensus         5 ~~~~~~~~~k~~-kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1           5 TRIWRLFNHQEH-KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             HHHHHHHTTSCE-EEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHhCCCeE-EEEEECCCCCCHHHHHHHHhcC
Confidence            344455544443 3899999999999999998865

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.60  E-value=1.9e-05  Score=60.67  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=26.4

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      .++.+  ++|.|||||||||.++.|+..++  ...|+
T Consensus         6 ~~~~i--I~l~G~pGSGKsT~a~~La~~~g--~~~is   38 (194)
T d3adka_           6 KKSKI--IFVVGGPGSGKGTQCEKIVQKYG--YTHLS   38 (194)
T ss_dssp             HTSCE--EEEEECTTSSHHHHHHHHHHHTC--CEEEE
T ss_pred             cCCcE--EEEECCCCCCHHHHHHHHHHHhC--CeeEe
Confidence            44455  89999999999999999999876  34444

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.58  E-value=2.1e-05  Score=60.13  Aligned_cols=28  Identities=39%  Similarity=0.566  Sum_probs=23.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ++|.|||||||||.++.|+..+.  +.+++
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g--~~~i~   33 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFC--VCHLA   33 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT--CEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC--CeEEe
Confidence            78999999999999999999886  34444

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=1.9e-05  Score=60.07  Aligned_cols=26  Identities=31%  Similarity=0.545  Sum_probs=22.7

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      |.+  ++|.||||+||||+++.|.....
T Consensus         2 G~i--ivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRV--VVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCE--EEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeE--EEEECCCCCCHHHHHHHHHhhCC
Confidence            556  89999999999999999988753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.57  E-value=0.00026  Score=60.50  Aligned_cols=49  Identities=33%  Similarity=0.577  Sum_probs=38.9

Q ss_pred             CCCCCccCcHHHHHHHHHHHhc-CCCCcEEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          11 NNLQKLDFHCKQANHLRNLLKE-GDFPHLLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      .+++++.........++..... +..  +++.||.|+||||++.++...+..
T Consensus       135 ~~l~~LG~~~~~~~~l~~l~~~~~Gl--iLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         135 LDLHSLGMTAHNHDNFRRLIKRPHGI--ILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             CCGGGSCCCHHHHHHHHHHHTSSSEE--EEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             hhhhhhcccHHHHHHHHHHHhhhhce--EEEEcCCCCCccHHHHHHhhhhcC
Confidence            4677777777778888877743 344  899999999999999999998753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.56  E-value=2e-05  Score=59.63  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.||+||||||+++.|+..+..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~~l~~   27 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMDNLRK   27 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            889999999999999999987753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.54  E-value=2.8e-05  Score=59.58  Aligned_cols=30  Identities=23%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      -.++|.|||||||||+++.|+..+.  ..+++
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g--~~~is   36 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFE--LKHLS   36 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBC--CEEEE
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHC--CeEEc
Confidence            3488999999999999999999876  34443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.54  E-value=0.00032  Score=51.15  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+++.-.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~~   25 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGEI   25 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            78999999999999999987654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.52  E-value=8.4e-05  Score=57.48  Aligned_cols=23  Identities=35%  Similarity=0.439  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|+||+|+||||++--||..+.
T Consensus         9 i~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           9 VLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999877776654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=0.00013  Score=56.62  Aligned_cols=26  Identities=31%  Similarity=0.477  Sum_probs=20.6

Q ss_pred             CCCc-EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          34 DFPH-LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        34 ~~~~-~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ..|+ ++|+||+|+||||.+--||..+
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3455 7899999999999977777654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.50  E-value=6.5e-05  Score=57.20  Aligned_cols=23  Identities=35%  Similarity=0.247  Sum_probs=20.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.|.||+||||||+++.|+..+.
T Consensus        25 IgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          25 LGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            56999999999999999988765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=3e-05  Score=60.54  Aligned_cols=23  Identities=43%  Similarity=0.567  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|||||||+|.++.|+..+.
T Consensus         6 I~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78889999999999999999986

>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: MgsA/YrvN C-terminal domain-like
domain: Uncharacterized protein YrvN
species: Prochlorococcus marinus [TaxId: 1219]

Probab=97.49  E-value=3.2e-05  Score=56.89  Aligned_cols=48  Identities=0%  Similarity=-0.043  Sum_probs=42.3

Q ss_pred             HHHHhCChHHHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2281         230 GLLANCDSDLKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN  285 (287)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~  285 (287)
                      .+.|++    +.+..+++.+|..||..|++++.    ||+|++.+++++||||||.
T Consensus         8 A~~KSi----RgSD~dAAly~larml~~Gedp~----~i~RRli~~AsEDIGlAdp   55 (163)
T d3ctda1           8 AFIKSI----RGSDPDATLYWLANMVEAGEDPN----FIFRRLLISACEDIGLADP   55 (163)
T ss_dssp             HHHHHH----HTTCHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHTTGGGST
T ss_pred             HHHHHH----hcCCccHHHHHHHHHHHcCCchH----HHHHHHHHHHHHhhcccCh
Confidence            355655    77888999999999999998887    8999999999999999974

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.9e-05  Score=58.73  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=22.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|||||||||.++.|+..+..
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~~   26 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYGI   26 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            789999999999999999998864

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.46  E-value=0.00013  Score=52.29  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=17.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .++.+|.|+|||+++-.++...
T Consensus        11 ~ll~apTGsGKT~~~~~~~~~~   32 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAYAAQ   32 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHc
Confidence            7899999999999875554433

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.45  E-value=3.7e-05  Score=59.79  Aligned_cols=31  Identities=26%  Similarity=0.270  Sum_probs=25.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh----CCCEEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL----YGPVIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~----~~~~i~ide   68 (287)
                      +.|+|.||+||||+++.|...+    ....+++|+
T Consensus        27 IwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg   61 (208)
T d1m7ga_          27 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG   61 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc
Confidence            8999999999999999998765    234677774

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=8.8e-05  Score=55.04  Aligned_cols=22  Identities=23%  Similarity=0.397  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+.-
T Consensus         5 v~liG~~~vGKSsLi~rl~~~~   26 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKGI   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999888643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=6.9e-05  Score=55.27  Aligned_cols=22  Identities=27%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||+++|.+.-
T Consensus         4 I~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.40  E-value=0.00078  Score=49.35  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|+|++|+|||||++.+.+.-.
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~~   30 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGEV   30 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            79999999999999999987644

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=4.5e-05  Score=58.13  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=21.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|+||||+||||+++.|+....
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            89999999999999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.38  E-value=4.7e-05  Score=59.51  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +.+.|||||||||.++.|+..+..
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~   29 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGF   29 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCC
Confidence            567799999999999999999874

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=5.4e-05  Score=57.91  Aligned_cols=23  Identities=43%  Similarity=0.690  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|+||||+||||+++.|+....
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            89999999999999999998764

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00022  Score=55.18  Aligned_cols=54  Identities=28%  Similarity=0.412  Sum_probs=34.7

Q ss_pred             cCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeCCCCCCHHHHHHHHHHHH
Q psy2281          32 EGDFPH-LLFYGPSGAGKKTRIMALLKELYGP--VIILNETDHLTREAQQALRRTME   85 (287)
Q Consensus        32 ~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide~d~l~~~~~~~l~~~i~   85 (287)
                      +|..|+ ++|+||+|+||||++--||..+...  -|.+=-+|.....+.+.|..+-+
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~   61 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQ   61 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhh
Confidence            345566 7799999999999987777665322  23333345555666666655444

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.35  E-value=0.00032  Score=54.13  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.||+|+||||++--||..+.
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78899999999999877776653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.31  E-value=5.5e-05  Score=57.29  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=21.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|.|++|+||||+++.|+..+..
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            678999999999999999988753

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.31  E-value=6.6e-05  Score=55.87  Aligned_cols=24  Identities=17%  Similarity=0.109  Sum_probs=21.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      +.++|++|||||||+..++..+..
T Consensus         4 i~I~G~~gSGKTTli~~l~~~L~~   27 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAAAVR   27 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHh
Confidence            679999999999999999887653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.0011  Score=49.42  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|.+|+|||||++++++.
T Consensus         8 I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           8 VAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            899999999999999999875

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00076  Score=50.29  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+.-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~~   28 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRNE   28 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987743

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00074  Score=50.27  Aligned_cols=22  Identities=18%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+.-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDKR   27 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            7899999999999999988654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.001  Score=49.01  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7999999999999999998754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=8.4e-05  Score=57.69  Aligned_cols=23  Identities=17%  Similarity=0.222  Sum_probs=21.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.|.||+||||||+++.|+..+.
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            67999999999999999998875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00049  Score=50.87  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         6 i~viG~~~vGKTsli~~l~~~~   27 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999998754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00065  Score=50.01  Aligned_cols=22  Identities=27%  Similarity=0.529  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+.+.-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998654

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.19  E-value=0.00062  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.|++|+|||||++.+.....
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~~   27 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQF   27 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            78999999999999999977543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00014  Score=56.67  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=27.4

Q ss_pred             HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          22 QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        22 ~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ..+.|+..+ +|..  .+|.|+||+|||||+++|...
T Consensus        85 g~~~L~~~l-~~kt--~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          85 GIEELKEYL-KGKI--STMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             THHHHHHHH-SSSE--EEEECSTTSSHHHHHHHHSTT
T ss_pred             hHhhHHHHh-cCCe--EEEECCCCCCHHHHHHhhcch
Confidence            356677766 4666  899999999999999998764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.15  E-value=0.00057  Score=50.36  Aligned_cols=22  Identities=36%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            7999999999999999987654

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00048  Score=51.18  Aligned_cols=23  Identities=26%  Similarity=0.593  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|.+|+|||||++.+...-.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~f   31 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQF   31 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            78999999999999999986553

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.14  E-value=8.4e-05  Score=56.83  Aligned_cols=27  Identities=33%  Similarity=0.608  Sum_probs=23.3

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .+.+|.++|.|+||+|||||+++|.+.
T Consensus        20 ~~~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          20 EGGLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHhcCC
Confidence            455667999999999999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00025  Score=58.75  Aligned_cols=29  Identities=34%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      .|+...+.|+||||+|||||+..+++.+.
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            34443489999999999999999987764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00015  Score=54.74  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|.||+|+||||+++.|+....
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            89999999999999999987653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0023  Score=47.11  Aligned_cols=22  Identities=14%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+.-
T Consensus         7 v~liG~~~vGKTsLl~~~~~~~   28 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEGQ   28 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            8999999999999999988654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00045  Score=54.40  Aligned_cols=22  Identities=27%  Similarity=0.315  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|+|||.+||||++|.++-..
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHHHH
Confidence            7999999999999999986543

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.08  E-value=0.0011  Score=50.93  Aligned_cols=42  Identities=29%  Similarity=0.343  Sum_probs=29.2

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ..+...+.+..+++.+   +.++.+|.|+|||.++-.++......
T Consensus        71 Lr~yQ~eav~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~~~~  112 (206)
T d2fz4a1          71 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTP  112 (206)
T ss_dssp             CCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHSCSC
T ss_pred             cCHHHHHHHHHHHhCC---CcEEEeCCCCCceehHHhHHHHhcCc
Confidence            3444566676666543   26788999999999887777766544

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.08  E-value=0.00032  Score=58.01  Aligned_cols=22  Identities=41%  Similarity=0.379  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +.|+||||+|||||+..++..+
T Consensus        54 igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          54 VGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EeeeCCCCCCHHHHHHHHHHHH
Confidence            8999999999999999998765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00065  Score=50.57  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=8.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+++.-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSEDA   30 (173)
T ss_dssp             EEEECCCCC-------------
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999887644

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.06  E-value=0.00049  Score=53.78  Aligned_cols=21  Identities=33%  Similarity=0.346  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|+|||.+||||++|.++-.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHHH
Confidence            899999999999999987644

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.00065  Score=52.11  Aligned_cols=23  Identities=30%  Similarity=0.444  Sum_probs=20.5

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++|.|++|+|||||++.+.+.-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            38999999999999999998754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.03  E-value=0.0016  Score=48.18  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+.-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~~   29 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADDS   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHcCC
Confidence            7899999999999999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00017  Score=55.47  Aligned_cols=25  Identities=24%  Similarity=0.537  Sum_probs=22.0

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      |.++|.|+||+|||||+++|.+.-.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~   28 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSV   28 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5589999999999999999987643

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.02  E-value=0.00018  Score=55.70  Aligned_cols=27  Identities=26%  Similarity=0.365  Sum_probs=17.1

Q ss_pred             CCCCc-EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          33 GDFPH-LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        33 g~~~~-~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++.|+ ++|+||+|+||||++--||..+
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34566 7889999999999977776554

>d2qw6a1 a.80.1.2 (A:241-328) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: MgsA/YrvN C-terminal domain-like
domain: Uncharacterized protein EfaeDRAFT 0938
species: Enterococcus faecium [TaxId: 1352]

Probab=97.01  E-value=0.00012  Score=47.34  Aligned_cols=41  Identities=5%  Similarity=-0.007  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2281         240 KSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMAMYLQFMEDTLSN  285 (287)
Q Consensus       240 ~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~  285 (287)
                      +.+..+.+.+|..||..+++ +.    +++|++.++++||||+||.
T Consensus        12 RgSD~dAAlywlarml~~GD-~~----~i~RRLi~~AsEDIGlAdp   52 (88)
T d2qw6a1          12 RGSDVDAALHYLARLVEAGD-LA----SICRRLMVIGYEDIGLGNP   52 (88)
T ss_dssp             HTTCHHHHHHHHHHHHHTTC-HH----HHHHHHHHHHHHTC---CH
T ss_pred             HcCCccHHHHHHHHHHHcCC-hh----HHHHHHHHHHHHHhhccCh
Confidence            67778889999999999984 43    7999999999999999974

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.01  E-value=0.00059  Score=52.26  Aligned_cols=40  Identities=18%  Similarity=0.264  Sum_probs=23.7

Q ss_pred             EEEEeCCCCCCHH----HHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          63 VIILNETDHLTRE----AQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        63 ~i~ide~d~l~~~----~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      .|++||+|.+..+    ....+...+....++.++++.+...++
T Consensus       141 ~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl~n  184 (202)
T d2p6ra3         141 CLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN  184 (202)
T ss_dssp             EEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT
T ss_pred             hccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCCCc
Confidence            8999999976422    233345556666666666654443344

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00046  Score=55.88  Aligned_cols=48  Identities=27%  Similarity=0.468  Sum_probs=31.6

Q ss_pred             CCCc-EEEeCCCCCcHHHHHHHHHHHhC------CC--EEEEeCCCCCCHHHHHHHHH
Q psy2281          34 DFPH-LLFYGPSGAGKKTRIMALLKELY------GP--VIILNETDHLTREAQQALRR   82 (287)
Q Consensus        34 ~~~~-~~l~Gp~G~GKTtl~~~l~~~~~------~~--~i~ide~d~l~~~~~~~l~~   82 (287)
                      +.|- +.|.|++||||||++..|...+.      ..  ++-+|+.. ++.+.+..|.+
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~DdfY-~t~~~r~~L~~   81 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY-LTHEDQLKLNE   81 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB-CCHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCCC-CCHHHHHHHhh
Confidence            3343 67999999999999988866541      12  34577765 55554444444

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.0016  Score=49.37  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+...-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHhhCC
Confidence            7899999999999999988654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00055  Score=50.86  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00069  Score=50.47  Aligned_cols=23  Identities=22%  Similarity=0.559  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|.+|+|||||++.+...-.
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~~f   31 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQSYF   31 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            89999999999999999886543

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00034  Score=52.10  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=17.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+++.-
T Consensus         6 i~vvG~~~vGKTsli~~~~~~~   27 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTGE   27 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC---
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999876653

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00058  Score=51.03  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~f   27 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQF   27 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            78999999999999999887654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=9e-05  Score=56.56  Aligned_cols=25  Identities=32%  Similarity=0.450  Sum_probs=22.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      .+|+||||+||||++.||.-.+.+.
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~g~   51 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALIPD   51 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCC
Confidence            6889999999999999999877654

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0021  Score=47.29  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~   28 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEKK   28 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998754

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.91  E-value=0.00025  Score=55.83  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.||+|+|||||++.+.+...
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Confidence            68999999999999999987664

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.90  E-value=0.00066  Score=49.73  Aligned_cols=25  Identities=28%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|.|+=|+||||++|.+++.+...
T Consensus        36 i~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          36 VYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             EEEecCCCccHHHHHHHHHhhcccc
Confidence            8899999999999999999998644

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0018  Score=48.07  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+||||+++.+...-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~~   29 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEKK   29 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.85  E-value=0.0011  Score=49.10  Aligned_cols=22  Identities=18%  Similarity=0.487  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.++..-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            8999999999999999987644

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.002  Score=50.53  Aligned_cols=38  Identities=16%  Similarity=0.232  Sum_probs=28.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC---------EEEEeCCCCCCHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP---------VIILNETDHLTRE   75 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---------~i~ide~d~l~~~   75 (287)
                      ++|+||||+|||+++..++......         +++++....+...
T Consensus        40 ~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (258)
T d1v5wa_          40 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPD   86 (258)
T ss_dssp             EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHH
Confidence            8999999999999999888654211         6777766555543

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00097  Score=49.54  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHcCC
Confidence            7899999999999999988644

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00094  Score=49.54  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+....
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999988753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00039  Score=56.93  Aligned_cols=37  Identities=22%  Similarity=0.187  Sum_probs=28.1

Q ss_pred             CCCc-EEEeCCCCCcHHHHHHHHHHHhC-----CC--EEEEeCCC
Q psy2281          34 DFPH-LLFYGPSGAGKKTRIMALLKELY-----GP--VIILNETD   70 (287)
Q Consensus        34 ~~~~-~~l~Gp~G~GKTtl~~~l~~~~~-----~~--~i~ide~d   70 (287)
                      +.|- +.|.|++||||||+++.|...+.     ..  +|-.|+..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~  122 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL  122 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeE
Confidence            3344 78999999999999999998874     12  45567764

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.0031  Score=48.25  Aligned_cols=36  Identities=14%  Similarity=0.280  Sum_probs=23.4

Q ss_pred             EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEEEEEeC
Q psy2281          63 VIILNETDHLTRE-AQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        63 ~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++||+|.+-.. ....+...+...+++..+++.+.
T Consensus       146 ~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SA  182 (206)
T d1s2ma1         146 LFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSA  182 (206)
T ss_dssp             EEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEES
T ss_pred             EEEeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEE
Confidence            6889999976533 34556666666666666655443

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.00034  Score=51.05  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=20.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+...
T Consensus         3 I~liG~~nvGKSSLln~l~~~~~   25 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDRL   25 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999988543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00036  Score=53.64  Aligned_cols=23  Identities=17%  Similarity=0.132  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.|+||||+|||+++..++....
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHH
Confidence            89999999999999988876643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00098  Score=49.58  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+...-
T Consensus         9 I~vvG~~~vGKSSli~~~~~~~   30 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTNK   30 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7999999999999999887643

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0023  Score=47.07  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+.+.-
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999988654

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.0014  Score=49.19  Aligned_cols=22  Identities=14%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+....
T Consensus         8 ivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            8999999999999999988754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.74  E-value=0.0015  Score=47.98  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+...-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~~   26 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAGR   26 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0014  Score=48.36  Aligned_cols=23  Identities=22%  Similarity=0.602  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|.+|+|||+|++.+...-.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~f   28 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGIF   28 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            78999999999999999887653

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0012  Score=49.66  Aligned_cols=22  Identities=18%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.++..-
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            7899999999999999988654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.00035  Score=54.08  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=30.1

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY---GPVIILNETDH   71 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~   71 (287)
                      +|.+  +.|.|+.|+||||+++.|+..+.   ..++++++...
T Consensus         2 rG~l--I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~   42 (209)
T d1nn5a_           2 RGAL--IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPER   42 (209)
T ss_dssp             CCCE--EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CeeE--EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4666  88999999999999999988764   23777777543

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.73  E-value=0.00026  Score=53.95  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=25.9

Q ss_pred             CCCCc-EEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          33 GDFPH-LLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        33 g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      +..|- ++|-|+.||||||+++.|++.+.. ..++.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~-~~~~~   40 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKND-ICLLT   40 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTT-EEEEC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCC-cEEEE
Confidence            33443 789999999999999999987754 44443

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0055  Score=47.76  Aligned_cols=38  Identities=18%  Similarity=0.111  Sum_probs=27.5

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~   56 (287)
                      +..+...+...+.++..-+.+|+|..|||||-++-..+
T Consensus        60 Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~   97 (233)
T d2eyqa3          60 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA   97 (233)
T ss_dssp             HHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHH
Confidence            44556666666666665558999999999999864443

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.71  E-value=0.0012  Score=49.35  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|.+|+|||+|++.++....
T Consensus         5 ivliG~~~vGKTsli~r~~~~~f   27 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDCF   27 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            78999999999999998887543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0014  Score=48.41  Aligned_cols=23  Identities=26%  Similarity=0.652  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||+|++.++...+
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~f   27 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKRF   27 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCCC
Confidence            78999999999999999987543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00045  Score=53.31  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=23.2

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +|.+  ++|-|+.||||||+++.|+..+.
T Consensus         1 rgkf--IviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKY--IVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCE--EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCE--EEEECCCCCCHHHHHHHHHHHHH
Confidence            3666  89999999999999999998763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.0015  Score=48.96  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|||||||++.+.+.-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~~   26 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNKK   26 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999988644

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.0043  Score=46.04  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+.+.-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~   31 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDT   31 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            8999999999999999998754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.64  E-value=0.0053  Score=45.02  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+.+.-
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~   28 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDS   28 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.0058  Score=44.93  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||++++.+.+.-
T Consensus         9 i~vvG~~~vGKTsli~~~~~~~   30 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGA   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7999999999999999887753

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.001  Score=49.31  Aligned_cols=22  Identities=23%  Similarity=0.594  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+|||||++.+++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999887643

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.0014  Score=48.26  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.++..-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.0004  Score=51.63  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||+++|++.-
T Consensus         3 V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           3 VLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00078  Score=53.91  Aligned_cols=51  Identities=22%  Similarity=0.385  Sum_probs=35.7

Q ss_pred             HHHHHHhcCCCCc---EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCCHH
Q psy2281          25 HLRNLLKEGDFPH---LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLTRE   75 (287)
Q Consensus        25 ~l~~~~~~g~~~~---~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~~~   75 (287)
                      .|...+..|.+|.   +.|+||||+||||++..++....   ..++++|--+.+.+.
T Consensus        41 ~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~   97 (263)
T d1u94a1          41 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI   97 (263)
T ss_dssp             HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred             HHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHH
Confidence            4555553344332   89999999999999877766553   338999977766654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.59  E-value=0.00034  Score=52.52  Aligned_cols=21  Identities=38%  Similarity=0.556  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|+|+||+|||||+++|.+.
T Consensus         3 I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0017  Score=47.88  Aligned_cols=22  Identities=23%  Similarity=0.283  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6899999999999999987654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00037  Score=54.71  Aligned_cols=21  Identities=19%  Similarity=0.205  Sum_probs=18.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|+||||+||||++..++..
T Consensus        37 ~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          37 TELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            899999999999999877643

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.56  E-value=0.0023  Score=47.27  Aligned_cols=22  Identities=23%  Similarity=0.566  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|.+|+||||+++.+++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~   28 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKI   28 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999998754

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.55  E-value=0.0045  Score=49.16  Aligned_cols=22  Identities=27%  Similarity=0.590  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|.|.+|+||||++++|.+.-
T Consensus        35 I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEECCCCCcHHHHHHHHhCCC
Confidence            8999999999999999998753

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.55  E-value=0.0014  Score=48.72  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=19.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+.+.
T Consensus        19 I~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          19 ILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999988654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.0041  Score=45.75  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+...-
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999988754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.00033  Score=52.58  Aligned_cols=23  Identities=22%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      |.++|.|.+|+|||||+++|++.
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            56899999999999999999764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.52  E-value=0.0019  Score=50.73  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=26.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC---------CCEEEEeCCCCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY---------GPVIILNETDHLT   73 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~---------~~~i~ide~d~l~   73 (287)
                      ++|+||||+||||++.-++....         ...++++......
T Consensus        39 ~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (254)
T d1pzna2          39 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR   83 (254)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhH
Confidence            89999999999999987776542         2266666554443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.52  E-value=0.0008  Score=50.12  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|.|++|+|||||++.+.+..
T Consensus        16 I~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          16 LVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999986643

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.49  E-value=0.00097  Score=49.97  Aligned_cols=21  Identities=38%  Similarity=0.526  Sum_probs=18.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+...
T Consensus        20 I~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            899999999999999987543

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.47  E-value=0.0034  Score=48.07  Aligned_cols=37  Identities=5%  Similarity=0.255  Sum_probs=23.7

Q ss_pred             EEEEeCCCCCCHHH-HHHHHHHHHhccCCcEEEEEeCC
Q psy2281          63 VIILNETDHLTREA-QQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        63 ~i~ide~d~l~~~~-~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      .+++||+|.+.... ...+...+...+++..+++.+..
T Consensus       150 ~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SAT  187 (209)
T d1q0ua_         150 ILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSAT  187 (209)
T ss_dssp             EEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             EEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEcc
Confidence            78999998765432 34455666666677766665433

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.47  E-value=0.0012  Score=49.06  Aligned_cols=22  Identities=32%  Similarity=0.391  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++++|++|+||||+++.++...
T Consensus        15 IvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            8999999999999999886543

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.44  E-value=0.00044  Score=55.90  Aligned_cols=37  Identities=22%  Similarity=0.175  Sum_probs=24.2

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHHhCC---C--EEEEeCCCC
Q psy2281          35 FPHLLFYGPSGAGKKTRIMALLKELYG---P--VIILNETDH   71 (287)
Q Consensus        35 ~~~~~l~Gp~G~GKTtl~~~l~~~~~~---~--~i~ide~d~   71 (287)
                      .|-+.+.|++||||||++++|...+..   .  +|-.|+.+.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfyr   45 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   45 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence            344899999999999999998876642   2  444466543

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.44  E-value=0.00076  Score=51.05  Aligned_cols=25  Identities=32%  Similarity=0.282  Sum_probs=19.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPV   63 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~   63 (287)
                      +.++|++||||||+++.|.. .+..+
T Consensus         6 IgitG~~gSGKstva~~l~~-~g~~~   30 (191)
T d1uf9a_           6 IGITGNIGSGKSTVAALLRS-WGYPV   30 (191)
T ss_dssp             EEEEECTTSCHHHHHHHHHH-TTCCE
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCeE
Confidence            67999999999999999854 44333

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.43  E-value=0.0028  Score=48.02  Aligned_cols=19  Identities=32%  Similarity=0.406  Sum_probs=15.3

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~   56 (287)
                      .++.+|.|+|||..+-.++
T Consensus        26 ~lv~~pTGsGKT~i~~~~~   44 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIA   44 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHH
Confidence            7899999999998655444

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.41  E-value=0.00067  Score=51.03  Aligned_cols=23  Identities=17%  Similarity=0.208  Sum_probs=20.0

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +.+.|+|+||+|||||+++|.+.
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999998653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.37  E-value=0.00048  Score=56.24  Aligned_cols=22  Identities=32%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+|+|||||||||++.||.-.+
T Consensus        27 nvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHHHHh
Confidence            6999999999999999997644

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.0016  Score=50.32  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILNETD   70 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d   70 (287)
                      +|.+  +.|-|+-||||||+++.|+..+.....++.+..
T Consensus         2 kGk~--I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~   38 (214)
T d1tmka_           2 RGKL--ILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPE   38 (214)
T ss_dssp             CCCE--EEEEESTTSSHHHHHHHHHHHTTTSEEEEESSC
T ss_pred             CeEE--EEEECCCCCcHHHHHHHHHHHHHhCCEEEEECC
Confidence            4666  999999999999999999998876655555543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.34  E-value=0.00068  Score=53.24  Aligned_cols=30  Identities=20%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY---GPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~id   67 (287)
                      ++|+||||+|||+++.-++....   ..+++++
T Consensus        29 ~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          29 ILATGATGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence            89999999999999988877652   2256655

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.34  E-value=0.0019  Score=51.75  Aligned_cols=51  Identities=24%  Similarity=0.436  Sum_probs=35.1

Q ss_pred             HHHHHHhcCCCCc---EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCCHH
Q psy2281          25 HLRNLLKEGDFPH---LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLTRE   75 (287)
Q Consensus        25 ~l~~~~~~g~~~~---~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~~~   75 (287)
                      .|...+-.|.+|.   +.|+||+|+||||++..++....   +.+++||--..++++
T Consensus        47 ~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e  103 (269)
T d1mo6a1          47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD  103 (269)
T ss_dssp             HHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHH
T ss_pred             HHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHH
Confidence            4444443344443   78999999999999866665442   338999976767765

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.32  E-value=0.00034  Score=54.70  Aligned_cols=22  Identities=41%  Similarity=0.614  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+|.|+||+|||||+++|.+..
T Consensus       100 ~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2         100 TVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             EEEEESHHHHHHHHHHHHCC--
T ss_pred             EEEECCCCccHHHHHHhhccHh
Confidence            7899999999999999987643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.00091  Score=49.81  Aligned_cols=21  Identities=29%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|.+|+|||||+++|.+.
T Consensus         8 I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0079  Score=46.40  Aligned_cols=37  Identities=14%  Similarity=0.355  Sum_probs=23.9

Q ss_pred             EEEEeCCCCCCHH-HHHHHHHHHHhccCCcEEEEEeCC
Q psy2281          63 VIILNETDHLTRE-AQQALRRTMEKYITTCRLILCANS   99 (287)
Q Consensus        63 ~i~ide~d~l~~~-~~~~l~~~i~~~~~~~~~i~~~~~   99 (287)
                      .+++||+|.+... ....+.+.+...+++..+++.+..
T Consensus       158 ~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT  195 (218)
T d2g9na1         158 MFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSAT  195 (218)
T ss_dssp             EEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             EEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEec
Confidence            8889999876433 244555666777777766665443

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.007  Score=46.24  Aligned_cols=36  Identities=19%  Similarity=0.360  Sum_probs=22.7

Q ss_pred             EEEEeCCCCCC-HHHHHHHHHHHHhccCCcEEEEEeC
Q psy2281          63 VIILNETDHLT-REAQQALRRTMEKYITTCRLILCAN   98 (287)
Q Consensus        63 ~i~ide~d~l~-~~~~~~l~~~i~~~~~~~~~i~~~~   98 (287)
                      .+++||+|.+. .+....+.+.+...+++...++.+.
T Consensus       149 ~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SA  185 (206)
T d1veca_         149 MIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA  185 (206)
T ss_dssp             EEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred             eEEEeccccccccchHHHHHHHHHhCCCCCEEEEEEe
Confidence            88999999654 2234455666676666666555443

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0031  Score=47.53  Aligned_cols=23  Identities=13%  Similarity=0.327  Sum_probs=20.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||+|++.+...-.
T Consensus         6 vvllG~~~vGKTSli~r~~~~~f   28 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNKF   28 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            78999999999999999887654

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0063  Score=46.75  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=27.5

Q ss_pred             CCCCCccCcHHHHHHHHHHH---------------hcCCCCcEEEeCCCCCcHHHHH
Q psy2281          11 NNLQKLDFHCKQANHLRNLL---------------KEGDFPHLLFYGPSGAGKKTRI   52 (287)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~~---------------~~g~~~~~~l~Gp~G~GKTtl~   52 (287)
                      .+|+++--++...+.+...-               -.|+-  +++.+|+|+|||...
T Consensus        10 ~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~d--vl~~a~TGsGKT~a~   64 (212)
T d1qdea_          10 YKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHD--VLAQAQSGTGKTGTF   64 (212)
T ss_dssp             CCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred             cChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCC--EEeecccccchhhhh
Confidence            35666655666666665321               35655  999999999999864

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.22  E-value=0.0011  Score=49.48  Aligned_cols=21  Identities=33%  Similarity=0.620  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|+||+||||++..+...
T Consensus        17 vl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          17 VLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHc
Confidence            899999999999999887764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.001  Score=49.85  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=19.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|.+|+|||||++++++.
T Consensus        11 V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            899999999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.19  E-value=0.0017  Score=51.96  Aligned_cols=51  Identities=25%  Similarity=0.435  Sum_probs=35.7

Q ss_pred             HHHHHHhcCCCCc---EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCCCCCHH
Q psy2281          25 HLRNLLKEGDFPH---LLFYGPSGAGKKTRIMALLKELY---GPVIILNETDHLTRE   75 (287)
Q Consensus        25 ~l~~~~~~g~~~~---~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d~l~~~   75 (287)
                      .|...+-.|.+|.   +.|+||+|||||+++..++....   +.+++||--..++++
T Consensus        44 ~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~  100 (268)
T d1xp8a1          44 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV  100 (268)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH
T ss_pred             HHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHH
Confidence            4444443343332   78999999999999988776653   338999976667664

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.13  E-value=0.0016  Score=49.71  Aligned_cols=33  Identities=27%  Similarity=0.302  Sum_probs=26.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY---GPVIILNETD   70 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide~d   70 (287)
                      ++|.|+-||||||+++.|.+.+.   .+++++.+-+
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P~   38 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPR   38 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            67899999999999999998763   2377777654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.11  E-value=0.00045  Score=50.58  Aligned_cols=22  Identities=32%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|.|++|+|||||+++|++.-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999874

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0015  Score=49.00  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++.|++|+|||||++.+.+.-
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~~   29 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDNK   29 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEECCCCcCHHHHHHHHhcCC
Confidence            7899999999999999987643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.012  Score=46.90  Aligned_cols=24  Identities=21%  Similarity=0.104  Sum_probs=20.9

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .|+.+.|..|+|||||+.++....
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhc
Confidence            459999999999999999997554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.08  E-value=0.00076  Score=52.86  Aligned_cols=22  Identities=27%  Similarity=0.282  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|.||||+|||+++.-++...
T Consensus        37 ~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          37 TEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHH
Confidence            8999999999999998887655

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.029  Score=42.63  Aligned_cols=42  Identities=12%  Similarity=0.239  Sum_probs=25.9

Q ss_pred             EEEEeCCCCCCH--HHHHHHHHHHHhccCCcEEEEE-eCCCCCCc
Q psy2281          63 VIILNETDHLTR--EAQQALRRTMEKYITTCRLILC-ANSMSQVI  104 (287)
Q Consensus        63 ~i~ide~d~l~~--~~~~~l~~~i~~~~~~~~~i~~-~~~~~~l~  104 (287)
                      .+++||+|.+-.  .....+.+.+...+.+..+++. +|..+.+.
T Consensus       148 ~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~  192 (207)
T d1t6na_         148 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR  192 (207)
T ss_dssp             EEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTH
T ss_pred             eeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHH
Confidence            889999996532  3344556666677667766554 44444443

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.06  E-value=0.0011  Score=51.40  Aligned_cols=23  Identities=35%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~   56 (287)
                      .|..  +.|+|+||+|||+++.-++
T Consensus        25 ~G~~--~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          25 IGRS--TLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             TTSE--EEEEESTTSSHHHHHHHHH
T ss_pred             CCeE--EEEEeCCCCCHHHHHHHHH
Confidence            4455  8999999999999986554

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.05  E-value=0.00073  Score=50.52  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=20.5

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          35 FPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        35 ~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .+.++|.|++++|||||+++|.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            345999999999999999998653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.05  E-value=0.0012  Score=49.33  Aligned_cols=20  Identities=35%  Similarity=0.609  Sum_probs=18.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      ++|.||+|+||||++..+..
T Consensus        18 vli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          18 VLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EEEEESSSSSHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            89999999999999988765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.99  E-value=0.012  Score=45.52  Aligned_cols=23  Identities=22%  Similarity=0.261  Sum_probs=20.3

Q ss_pred             CcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          36 PHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        36 ~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      |-+++.|.+++|||||+++|.+.
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            33899999999999999999865

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.97  E-value=0.0017  Score=49.75  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEE
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVI   64 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i   64 (287)
                      +.++|+.||||||+++.+.. .+..++
T Consensus         5 IgITG~igSGKStv~~~l~~-~G~~vi   30 (205)
T d1jjva_           5 VGLTGGIGSGKTTIANLFTD-LGVPLV   30 (205)
T ss_dssp             EEEECSTTSCHHHHHHHHHT-TTCCEE
T ss_pred             EEEECCCCCCHHHHHHHHHH-CCCeEE
Confidence            67999999999999998863 444333

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0019  Score=49.66  Aligned_cols=22  Identities=32%  Similarity=0.345  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +.|+|++||||||+++.+.. .+
T Consensus         6 IgitG~igSGKStv~~~l~~-~G   27 (208)
T d1vhta_           6 VALTGGIGSGKSTVANAFAD-LG   27 (208)
T ss_dssp             EEEECCTTSCHHHHHHHHHH-TT
T ss_pred             EEEECCCcCCHHHHHHHHHH-CC
Confidence            67999999999999998864 44

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.96  E-value=0.013  Score=44.80  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=16.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      +++..|+|+|||...-..+.
T Consensus        45 ~iv~a~TGsGKT~~~~l~~~   64 (208)
T d1hv8a1          45 IVAQARTGSGKTASFAIPLI   64 (208)
T ss_dssp             EEEECCSSSSHHHHHHHHHH
T ss_pred             eeeechhcccccceeecccc
Confidence            88999999999987655443

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.93  E-value=0.0019  Score=54.83  Aligned_cols=22  Identities=32%  Similarity=0.452  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+|+||||+|||+++.||+-.+
T Consensus        28 ~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999997543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.00071  Score=53.00  Aligned_cols=24  Identities=25%  Similarity=0.163  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG   61 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~   61 (287)
                      ++|-|+-||||||+++.|++.+..
T Consensus         5 I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           5 ISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhc
Confidence            899999999999999999987653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.85  E-value=0.0017  Score=48.05  Aligned_cols=21  Identities=38%  Similarity=0.648  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      ++|.|++|+||||++-.+...
T Consensus        18 vli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          18 VLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEeCCCCCHHHHHHHHHHc
Confidence            899999999999999777665

>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: gamma subunit
species: Escherichia coli [TaxId: 562]

Probab=95.83  E-value=0.13  Score=35.27  Aligned_cols=84  Identities=10%  Similarity=-0.013  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhccChhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---------------------------hCChH
Q psy2281         186 YIRDTAKLIISEQSPKKLLEVRTRLYELLVHSIPVNVLFKYLLEGLLA---------------------------NCDSD  238 (287)
Q Consensus       186 ~i~~l~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~---------------------------~~~~~  238 (287)
                      .+.++.+.|+..    +...+.+.+.++...|.++..+++++..++.+                           .++.+
T Consensus         6 ~~~~L~~~I~~~----d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~~a~~~~~~   81 (126)
T d1jr3a1           6 QALSLVEAMVEA----NGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPT   81 (126)
T ss_dssp             HHHHHHHHHHHT----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHcCCHH
Confidence            455566665554    33333344455667788887777766666543                           23445


Q ss_pred             HHHHHHHHHHHHhhHHhcCCChHHHHHHHHHHHHH
Q psy2281         239 LKSKSIEMAAMFEHRIHKGSKPIFHIEAYVASFMA  273 (287)
Q Consensus       239 ~~~~~~~~~~~~~~~l~~g~~~~~~l~~~i~~~~~  273 (287)
                      .....++.+.+....++.+.++++.+|..+.|+..
T Consensus        82 ~L~~~~~il~~~~~~ik~s~~~r~~~Em~llrll~  116 (126)
T d1jr3a1          82 DIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA  116 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence            56778889999999999999999999999999764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0018  Score=50.41  Aligned_cols=26  Identities=35%  Similarity=0.382  Sum_probs=21.9

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          35 FPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        35 ~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +|-++|+|.-|+||||+++.+.+...
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~~~   28 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNEQH   28 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCC
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhcCC
Confidence            34489999999999999999988643

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.0024  Score=54.57  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=24.6

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhC---CCEEEEeC
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELY---GPVIILNE   68 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~ide   68 (287)
                      |++++|++|+|||++++.++....   ..++++|-
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            699999999999999876654432   22788873

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=95.74  E-value=0.0036  Score=50.57  Aligned_cols=19  Identities=21%  Similarity=0.364  Sum_probs=15.7

Q ss_pred             HhcCCCCcEEEeCCCCCcHHH
Q psy2281          30 LKEGDFPHLLFYGPSGAGKKT   50 (287)
Q Consensus        30 ~~~g~~~~~~l~Gp~G~GKTt   50 (287)
                      +.+|+.  .++.+|.|+|||+
T Consensus         6 ~~~~~~--~lv~~~TGsGKT~   24 (305)
T d2bmfa2           6 FRKKRL--TIMDLHPGAGKTK   24 (305)
T ss_dssp             SSTTCE--EEECCCTTSSTTT
T ss_pred             hhcCCc--EEEEECCCCCHHH
Confidence            345666  8999999999996

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0032  Score=49.23  Aligned_cols=25  Identities=28%  Similarity=0.153  Sum_probs=22.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      ++|-|+-||||||+++.|+..+...
T Consensus         5 IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           5 LSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             EEEECCCCCcHHHHHHHHHHHHhhc
Confidence            7899999999999999999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.0033  Score=46.50  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=19.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|++|+|||||++.+++.
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988754

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.60  E-value=0.0033  Score=50.81  Aligned_cols=16  Identities=31%  Similarity=0.436  Sum_probs=14.0

Q ss_pred             cEEEeCCCCCcHHHHH
Q psy2281          37 HLLFYGPSGAGKKTRI   52 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~   52 (287)
                      ++++.|||||||||++
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4899999999999874

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.57  E-value=0.021  Score=45.32  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=20.1

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++.+.|+.|+|||||+.++....
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Confidence            58999999999999999996543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.0034  Score=50.03  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.1

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      |..  .+|+|++|+||||++..++..+
T Consensus        29 g~~--~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          29 GTV--GALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TSE--EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcE--EEEEeCCCCCHHHHHHHHHHHH
Confidence            555  8899999999999998887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.49  E-value=0.0028  Score=47.27  Aligned_cols=21  Identities=29%  Similarity=0.271  Sum_probs=19.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +.+.|++++|||||+++|++.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEeCCCCcHHHHHHHHHHh
Confidence            899999999999999999853

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.037  Score=42.57  Aligned_cols=38  Identities=13%  Similarity=0.180  Sum_probs=27.1

Q ss_pred             CCCCccCcHHHHHHHHHHH---------------hcCCCCcEEEeCCCCCcHHHH
Q psy2281          12 NLQKLDFHCKQANHLRNLL---------------KEGDFPHLLFYGPSGAGKKTR   51 (287)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~~---------------~~g~~~~~~l~Gp~G~GKTtl   51 (287)
                      +|+++--++...+.|...-               -+|+-  +++..|+|+|||..
T Consensus        18 sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~d--vi~~a~TGSGKTla   70 (222)
T d2j0sa1          18 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRD--VIAQSQSGTGKTAT   70 (222)
T ss_dssp             SGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             CHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCC--eEEEcCcchhhhhh
Confidence            5777766666666665431               34655  99999999999865

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.43  E-value=0.0045  Score=48.38  Aligned_cols=31  Identities=13%  Similarity=0.225  Sum_probs=24.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCCEEEEeCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGPVIILNETD   70 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~~i~ide~d   70 (287)
                      +.|+|+.||||||+++.|+...+  ..++|-+|
T Consensus         4 IgiTG~igSGKsTva~~l~e~~g--~~~i~~aD   34 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNYS--AVKYQLAG   34 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSC--EEECCTTH
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC--CeEEcccH
Confidence            78999999999999999988654  45555444

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.39  E-value=0.0043  Score=49.58  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=21.5

Q ss_pred             hcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          31 KEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        31 ~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .+|++  ++|.|+||+||||++.-++..
T Consensus        33 ~~G~l--~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          33 RGGEV--IMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             CTTCE--EEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeE--EEEEeCCCCCHHHHHHHHHHh
Confidence            45666  999999999999998777753

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.38  E-value=0.03  Score=42.48  Aligned_cols=21  Identities=29%  Similarity=0.134  Sum_probs=18.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|..++|||||+.+|...
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            899999999999999999644

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.37  E-value=0.0029  Score=51.63  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=16.1

Q ss_pred             EEEeCCCCCcHHHHH-HHHHHH
Q psy2281          38 LLFYGPSGAGKKTRI-MALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~-~~l~~~   58 (287)
                      +++.|++||||||++ ..++..
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~l   48 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYL   48 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHH
Confidence            899999999999875 334443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.21  E-value=0.03  Score=46.04  Aligned_cols=27  Identities=15%  Similarity=0.169  Sum_probs=22.1

Q ss_pred             CCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          33 GDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        33 g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ..+.++++.|..|+|||||+.+|....
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHH
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHC
Confidence            345569999999999999999986433

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=95.17  E-value=0.0097  Score=53.92  Aligned_cols=56  Identities=18%  Similarity=0.250  Sum_probs=38.0

Q ss_pred             cccccCCCCCCCccCcHHH--HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281           4 WVDKYRPNNLQKLDFHCKQ--ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus         4 w~~k~~p~~~~~~~~~~~~--~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      |..+|+.+...+...+--.  -.+.......++-..+++.|.+|+|||+.++.+.+.+
T Consensus        53 ~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          53 DIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3455665555555443322  3455666655544449999999999999999998876

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.17  E-value=0.0042  Score=52.72  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.7

Q ss_pred             cEEEeCCCCCcHHHHHHHHHH
Q psy2281          37 HLLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      +++++|.+|+|||||+++|.+
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            399999999999999999986

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0065  Score=45.11  Aligned_cols=23  Identities=30%  Similarity=0.423  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+|||||++.+.+.-.
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~f   30 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGSY   30 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCCC
Confidence            89999999999999998887543

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.02  E-value=0.017  Score=45.72  Aligned_cols=38  Identities=18%  Similarity=0.224  Sum_probs=26.7

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHH
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~   56 (287)
                      |..+...+...+.++..-+-+|.|..|||||-.+-..+
T Consensus        88 Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~  125 (264)
T d1gm5a3          88 QKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAI  125 (264)
T ss_dssp             HHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHH
Confidence            44455566665666655457999999999999865443

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.96  E-value=0.0062  Score=45.80  Aligned_cols=19  Identities=26%  Similarity=0.482  Sum_probs=17.6

Q ss_pred             EEEeCCCCCcHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALL   56 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~   56 (287)
                      +++.|.+|+||||+++.+.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999983

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.73  E-value=0.062  Score=40.37  Aligned_cols=21  Identities=29%  Similarity=0.186  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +++.|-.++|||||+.+|.+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHH
Confidence            899999999999999999764

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.68  E-value=0.016  Score=52.64  Aligned_cols=55  Identities=25%  Similarity=0.366  Sum_probs=37.2

Q ss_pred             ccccCCCCCCCccCcHH--HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281           5 VDKYRPNNLQKLDFHCK--QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~--~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +++|+-+...++..+--  +-.+.+..+..++-..+++.|.+|+|||+..+.+.+.+
T Consensus        93 ~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2          93 VDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            44566555555544332  23455666655554449999999999999999988765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.65  E-value=0.0088  Score=46.14  Aligned_cols=23  Identities=26%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|++|+||||+++.+.....
T Consensus         9 illlG~~~vGKTsll~~~~~~~~   31 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRILHV   31 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCc
Confidence            89999999999999998865443

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.39  E-value=0.014  Score=47.86  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=25.9

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC--EEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP--VIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~--~i~ide   68 (287)
                      +.|-|+-|+||||+++.|++.+...  ++++-|
T Consensus         9 I~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~~E   41 (333)
T d1p6xa_           9 IYLDGVYGIGKSTTGRVMASAASGGSPTLYFPE   41 (333)
T ss_dssp             EEEECSTTSSHHHHHHHHHSGGGCSSCEEEECC
T ss_pred             EEEECCccCCHHHHHHHHHHHhccCCCeEEEeC
Confidence            7889999999999999999987533  667766

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.28  E-value=0.011  Score=44.15  Aligned_cols=23  Identities=30%  Similarity=0.275  Sum_probs=20.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|..|+||||+++.+.....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~~   27 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIHG   27 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999976654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.23  E-value=0.012  Score=48.29  Aligned_cols=32  Identities=22%  Similarity=0.416  Sum_probs=27.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC---EEEEeCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP---VIILNET   69 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~---~i~ide~   69 (287)
                      +.|-|+-|+||||+++.++..+...   ++++.|-
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~EP   42 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFAITPNRILLIGEP   42 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTTTSGGGEEEECCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEeCc
Confidence            7889999999999999999987643   7788773

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.16  E-value=0.019  Score=42.68  Aligned_cols=25  Identities=24%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      +++.|..|+|||++++.+.....++
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t   29 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAG   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCC
Confidence            7999999999999999987766554

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=94.14  E-value=0.045  Score=38.71  Aligned_cols=21  Identities=33%  Similarity=0.324  Sum_probs=16.3

Q ss_pred             EEEeCCCCCcHHH-HHHHHHHH
Q psy2281          38 LLFYGPSGAGKKT-RIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTt-l~~~l~~~   58 (287)
                      -+++||=.||||| |++.+-+.
T Consensus         5 ~~i~GpMfsGKTteLi~~~~~~   26 (139)
T d2b8ta1           5 EFITGPMFAGKTAELIRRLHRL   26 (139)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEccccCHHHHHHHHHHHHH
Confidence            5789999999999 56665443

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=94.10  E-value=0.025  Score=51.56  Aligned_cols=55  Identities=18%  Similarity=0.357  Sum_probs=37.0

Q ss_pred             ccccCCCCCCCccCcHH--HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281           5 VDKYRPNNLQKLDFHCK--QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus         5 ~~k~~p~~~~~~~~~~~--~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ..+|+-+...+...+--  +-.+.......++...+++.|.+|+|||+..+.+.+.+
T Consensus        62 ~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          62 INAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34555555555443322  23466666666654449999999999999999988765

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=94.02  E-value=0.029  Score=50.94  Aligned_cols=54  Identities=24%  Similarity=0.397  Sum_probs=35.9

Q ss_pred             cccCCCCCCCccCcHH--HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281           6 DKYRPNNLQKLDFHCK--QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~--~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+|+-+...+.-.+--  +-.+.+.....++-..+++.|.+|+|||+..+.+.+.+
T Consensus        60 ~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          60 DMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             HHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4455444444443321  23455666655544449999999999999999998876

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.89  E-value=0.015  Score=47.71  Aligned_cols=31  Identities=26%  Similarity=0.366  Sum_probs=23.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCCC-EEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYGP-VIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~~-~i~ide   68 (287)
                      |.|-|+-|+||||+++.++..+... ++++.|
T Consensus         7 I~IEG~iGsGKTTl~~~La~~l~~~~v~~~~E   38 (329)
T d1e2ka_           7 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPE   38 (329)
T ss_dssp             EEECSCTTSSHHHHHHHHTC----CCEEEECC
T ss_pred             EEEECCcCCCHHHHHHHHHHHhCCCCeEEecc
Confidence            6788999999999999998776543 666665

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=93.81  E-value=0.037  Score=50.83  Aligned_cols=54  Identities=24%  Similarity=0.316  Sum_probs=36.5

Q ss_pred             cccCCCCCCCccCcHHH--HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281           6 DKYRPNNLQKLDFHCKQ--ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~~--~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++|+-+...+.-.+--.  -.+.......++-..+++.|.+|+|||+..+.+.+.+
T Consensus        92 ~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2          92 LAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             HHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34554555555443322  3456666666654449999999999999999888776

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.67  E-value=0.073  Score=42.40  Aligned_cols=37  Identities=19%  Similarity=0.155  Sum_probs=26.4

Q ss_pred             cHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          19 HCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        19 ~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      .+-..+.+...++.+.   .++.-|.|+|||-.+-+++..
T Consensus       115 rdyQ~~av~~~l~~~~---~il~~pTGsGKT~i~~~i~~~  151 (282)
T d1rifa_         115 HWYQKDAVFEGLVNRR---RILNLPTSAGRSLIQALLARY  151 (282)
T ss_dssp             CHHHHHHHHHHHHHSE---EEECCCTTSCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHhcCC---ceeEEEcccCccHHHHHHHHH
Confidence            4445667777776654   477789999999887777643

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.019  Score=45.95  Aligned_cols=37  Identities=22%  Similarity=0.185  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          23 ANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        23 ~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .+.+..++.=|+....+|.|++|+|||+++..+++..
T Consensus        31 ~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          31 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             ceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3455555533333339999999999999999998755

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=93.54  E-value=0.032  Score=51.28  Aligned_cols=55  Identities=25%  Similarity=0.340  Sum_probs=37.1

Q ss_pred             cccCCCCCCCccCcHH--HHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281           6 DKYRPNNLQKLDFHCK--QANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus         6 ~k~~p~~~~~~~~~~~--~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++|+-+...+...+--  +-.+.......++-..+++.|.+|+|||...+.+.+.+.
T Consensus        90 ~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2          90 AKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             HHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4555555555444322  235666666666544499999999999999999888763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.34  E-value=0.11  Score=39.11  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.3

Q ss_pred             CCc--EEEeCCCCCcHHHHHHHHHH
Q psy2281          35 FPH--LLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        35 ~~~--~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      -||  +++.|...+|||||+.+|.+
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            465  89999999999999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=93.17  E-value=0.016  Score=47.01  Aligned_cols=15  Identities=47%  Similarity=0.773  Sum_probs=14.1

Q ss_pred             EEEeCCCCCcHHHHH
Q psy2281          38 LLFYGPSGAGKKTRI   52 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~   52 (287)
                      .+|+|.||+|||||.
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            799999999999986

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.04  Score=41.53  Aligned_cols=29  Identities=24%  Similarity=0.292  Sum_probs=20.0

Q ss_pred             HHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHH
Q psy2281          24 NHLRNLLKEGDFPHLLFYGPSGAGKKTRIMAL   55 (287)
Q Consensus        24 ~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l   55 (287)
                      +.+...+ +|+-  +++.-|.|+|||......
T Consensus        32 ~ai~~~l-~g~~--vlv~apTGsGKT~~~~~~   60 (206)
T d1oywa2          32 EIIDTVL-SGRD--CLVVMPTGGGKSLCYQIP   60 (206)
T ss_dssp             HHHHHHH-TTCC--EEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHH-cCCC--EEEEcCCCCCCcchhhhh
Confidence            3444443 4554  999999999999876443

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.07  E-value=0.042  Score=44.05  Aligned_cols=26  Identities=23%  Similarity=0.425  Sum_probs=22.9

Q ss_pred             CCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          34 DFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        34 ~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ..|-++++|.-++||||++++|++.-
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCC
Confidence            45558999999999999999999865

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=92.84  E-value=0.021  Score=46.09  Aligned_cols=15  Identities=47%  Similarity=0.773  Sum_probs=14.0

Q ss_pred             EEEeCCCCCcHHHHH
Q psy2281          38 LLFYGPSGAGKKTRI   52 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~   52 (287)
                      .+|.|.||+|||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (313)
T d2olra1          17 AVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            789999999999986

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.66  E-value=0.2  Score=39.57  Aligned_cols=34  Identities=26%  Similarity=0.480  Sum_probs=25.7

Q ss_pred             HHHHHHH--hcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          24 NHLRNLL--KEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        24 ~~l~~~~--~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +.+..++  -+|+.  ++|.|++|+|||+++.-++...
T Consensus        57 raID~l~pigkGQr--~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          57 KVVDLLAPYAKGGK--IGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHHHHSCEETTCE--EEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeeeeccccCCCE--EEeeCCCCCCHHHHHHHHHHHH
Confidence            4555555  34555  9999999999999988887764

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.63  E-value=0.042  Score=43.74  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=24.5

Q ss_pred             Cc-EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEe
Q psy2281          36 PH-LLFYGPSGAGKKTRIMALLKELY---GPVIILN   67 (287)
Q Consensus        36 ~~-~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~id   67 (287)
                      |. +++.|.-|+||||++-.++..+.   ..++++|
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD   43 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence            44 78899999999998887777663   2377776

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=92.52  E-value=0.14  Score=36.18  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=16.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      -+++||=.+||||-+-..+..
T Consensus        10 ~lI~GpMfSGKTteLi~~~~~   30 (141)
T d1xx6a1          10 EVIVGPMYSGKSEELIRRIRR   30 (141)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEeccccHHHHHHHHHHHH
Confidence            688999999999976555433

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.42  E-value=0.043  Score=37.63  Aligned_cols=31  Identities=13%  Similarity=0.185  Sum_probs=24.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC---C--EEEEeC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG---P--VIILNE   68 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~--~i~ide   68 (287)
                      ++|.|-+|+||+|++++|...+..   .  +=++|+
T Consensus         9 i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~   44 (122)
T d1g8fa3           9 IVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEH   44 (122)
T ss_dssp             EEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCC
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecC
Confidence            889999999999999999665532   2  555665

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.34  E-value=0.034  Score=44.76  Aligned_cols=22  Identities=27%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      +.|+|.|.+|||||.+++.+.-
T Consensus        13 iGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
Confidence            8999999999999999999753

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.08  Score=41.71  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC---CCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY---GPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~---~~~i~id   67 (287)
                      +++.|.-|+||||++-.|+..+.   ..++++|
T Consensus        23 ii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD   55 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT   55 (279)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            77889999999998766665542   2377777

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.25  E-value=0.028  Score=45.46  Aligned_cols=15  Identities=47%  Similarity=0.771  Sum_probs=14.3

Q ss_pred             EEEeCCCCCcHHHHH
Q psy2281          38 LLFYGPSGAGKKTRI   52 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~   52 (287)
                      .+|.|-||||||||.
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            789999999999997

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.041  Score=41.56  Aligned_cols=30  Identities=20%  Similarity=0.141  Sum_probs=24.2

Q ss_pred             EEEeCCC-CCcHHHHHHHHHHHhC---CCEEEEe
Q psy2281          38 LLFYGPS-GAGKKTRIMALLKELY---GPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~-G~GKTtl~~~l~~~~~---~~~i~id   67 (287)
                      ++++|-. |+||||+.-.|+..+.   ..++++|
T Consensus         4 ~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           4 YFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            8899995 9999999888887764   2377877

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.03  E-value=0.06  Score=42.35  Aligned_cols=30  Identities=27%  Similarity=0.525  Sum_probs=24.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhCC---CEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELYG---PVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~~---~~i~id   67 (287)
                      +.|+|.=|+||||++-.|+..+..   .+++||
T Consensus         4 Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID   36 (269)
T d1cp2a_           4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG   36 (269)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            678999999999998877776643   288888

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.98  E-value=0.038  Score=44.54  Aligned_cols=26  Identities=15%  Similarity=0.488  Sum_probs=22.8

Q ss_pred             CCcEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          35 FPHLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        35 ~~~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      .|-++++|..++||||++++|.+.-.
T Consensus        24 lP~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          24 LPQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            45599999999999999999998654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.74  E-value=0.033  Score=45.26  Aligned_cols=21  Identities=24%  Similarity=0.145  Sum_probs=18.6

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +.|.|.|.+|||||.+++.+.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999654

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.084  Score=36.93  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=16.3

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      -+++||=.+||||-+-..+..
T Consensus         5 ~li~GpMfsGKTt~Li~~~~~   25 (133)
T d1xbta1           5 QVILGPMFSGKSTELMRRVRR   25 (133)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEecccCHHHHHHHHHHHH
Confidence            688999999999976554433

>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.22  E-value=0.45  Score=33.09  Aligned_cols=76  Identities=18%  Similarity=0.151  Sum_probs=49.4

Q ss_pred             HHHHHhcCCCCc-EEEeCCCCCcHHHHHHHHHHHhCCC---------------------------------EEEEeCCCC
Q psy2281          26 LRNLLKEGDFPH-LLFYGPSGAGKKTRIMALLKELYGP---------------------------------VIILNETDH   71 (287)
Q Consensus        26 l~~~~~~g~~~~-~~l~Gp~G~GKTtl~~~l~~~~~~~---------------------------------~i~ide~d~   71 (287)
                      |...+++| .++ ++|+|+.-.-+......|...+...                                 +|++++.+.
T Consensus         9 L~~~l~k~-l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~slF~~krli~i~~~~~   87 (140)
T d1jqlb_           9 LRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPEN   87 (140)
T ss_dssp             HHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCSTTCCHHHHHHHHHCCCTTCCCEEEEEECCTT
T ss_pred             HHHHHhcC-CCcEEEEEcChHHHHHHHHHHHHHHHHhCCcceeeeecccccCCHHHHHHHHcCCCcccCcEEEEEEcCCC
Confidence            44445555 444 7788877777777776665554211                                 778877654


Q ss_pred             C-CHHHHHHHHHHHHhccCCcEEEEEeCCCCC
Q psy2281          72 L-TREAQQALRRTMEKYITTCRLILCANSMSQ  102 (287)
Q Consensus        72 l-~~~~~~~l~~~i~~~~~~~~~i~~~~~~~~  102 (287)
                      . .....+.|..++..+++++.+++.+...++
T Consensus        88 ~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k  119 (140)
T d1jqlb_          88 GPNAAINEQLLTLTGLLHDDLLLIVRGNKLSK  119 (140)
T ss_dssp             CSCTTHHHHHHHHHHHCCSSCCEEEECSSCCT
T ss_pred             CCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCc
Confidence            3 344566788888888888888887765443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.88  E-value=0.07  Score=42.36  Aligned_cols=21  Identities=33%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             EEEeCCCCCcHHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +.|+|-|.+||||+.+++.+.
T Consensus         5 ~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           5 CGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999865

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.84  E-value=0.19  Score=39.70  Aligned_cols=29  Identities=21%  Similarity=0.251  Sum_probs=21.5

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHHHhCCC
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLKELYGP   62 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~   62 (287)
                      +|..  ++|.|++|+|||+++..+......+
T Consensus        66 ~GQr--~~Ifg~~g~GKt~l~~~~~~~~~~~   94 (276)
T d1fx0a3          66 RGQR--ELIIGDRQTGKTAVATDTILNQQGQ   94 (276)
T ss_dssp             TTCB--CBEEESSSSSHHHHHHHHHHTCCTT
T ss_pred             CCce--EeeccCCCCChHHHHHHHHhhhccc
Confidence            4545  8999999999999987655544333

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.42  E-value=0.069  Score=39.86  Aligned_cols=20  Identities=30%  Similarity=0.250  Sum_probs=18.8

Q ss_pred             EEEeCCCCCcHHHHHHHHHH
Q psy2281          38 LLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      +.+.|..++|||||+.+|.+
T Consensus         8 IaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEeccCCcHHHHHHHHHh
Confidence            79999999999999999976

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=89.86  E-value=0.19  Score=39.67  Aligned_cols=22  Identities=36%  Similarity=0.359  Sum_probs=20.0

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ++++|-|.+||||++++|.+.-
T Consensus       115 v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         115 ALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             EEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEecCccchhhhhhhhhccc
Confidence            7999999999999999998743

>d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: post-AAA+ oligomerization domain-like
superfamily: post-AAA+ oligomerization domain-like
family: DNA polymerase III clamp loader subunits, C-terminal domain
domain: delta subunit
species: Escherichia coli [TaxId: 562]

Probab=89.79  E-value=0.87  Score=30.72  Aligned_cols=44  Identities=7%  Similarity=0.041  Sum_probs=34.9

Q ss_pred             HHHHHhCChHHHHHHHHHHHHHhhHHhcCC--ChHHHHHHHHHHHH
Q psy2281         229 EGLLANCDSDLKSKSIEMAAMFEHRIHKGS--KPIFHIEAYVASFM  272 (287)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~~~~~l~~~i~~~~  272 (287)
                      ....+.++......++..+.+.|..++.|.  +++..||.++.+++
T Consensus        76 ~~~~~~~s~~~l~~~l~~l~~~D~~~K~~~~~~~~~~le~l~l~lc  121 (127)
T d1jr3d1          76 GEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLC  121 (127)
T ss_dssp             HHHHHHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence            334457888889999999999999999653  45578899988765

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.61  E-value=0.038  Score=44.03  Aligned_cols=41  Identities=12%  Similarity=0.023  Sum_probs=27.3

Q ss_pred             cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281          17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      .-++++.+.|+..  .+.+.-+.+.||.++|||||++.+.+..
T Consensus        16 ~~~~e~l~~l~~~--~~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          16 MANPEALKILSAI--TQPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EECHHHHHHHHTC--CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EECHHHHHHHHcC--CCCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            3345555555443  2222127899999999999999988754

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.74  E-value=0.13  Score=40.78  Aligned_cols=30  Identities=33%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHh---CCCEEEEe
Q psy2281          38 LLFYGPSGAGKKTRIMALLKEL---YGPVIILN   67 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~---~~~~i~id   67 (287)
                      ++++|.=|+||||++--++..+   +..+++||
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID   37 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG   37 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            6779999999999866655443   23488888

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.50  E-value=0.35  Score=38.28  Aligned_cols=33  Identities=18%  Similarity=0.297  Sum_probs=23.6

Q ss_pred             HHHHHHH--hcCCCCcEEEeCCCCCcHHHHHHHHHHH
Q psy2281          24 NHLRNLL--KEGDFPHLLFYGPSGAGKKTRIMALLKE   58 (287)
Q Consensus        24 ~~l~~~~--~~g~~~~~~l~Gp~G~GKTtl~~~l~~~   58 (287)
                      +.+..++  -+|+.  +++.|++|+|||+++..++..
T Consensus        57 raID~l~pig~GQr--~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          57 KAVDSLVPIGRGQR--ELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHHHHSCCBTTCB--CEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEecccCccCCCE--EEeecCCCCChHHHHHHHHHh
Confidence            4444444  34555  899999999999998766644

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.43  E-value=0.13  Score=39.06  Aligned_cols=30  Identities=27%  Similarity=0.346  Sum_probs=23.1

Q ss_pred             EEEe-CCCCCcHHHHHHHHHHHhC---CCEEEEe
Q psy2281          38 LLFY-GPSGAGKKTRIMALLKELY---GPVIILN   67 (287)
Q Consensus        38 ~~l~-Gp~G~GKTtl~~~l~~~~~---~~~i~id   67 (287)
                      +.++ +.-|+||||++-.++..+.   ..++++|
T Consensus         5 Iav~~~kGGvGKTtia~nLA~~la~~g~~VlliD   38 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD   38 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            6666 5689999999888876653   3388888

>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Helicase of the SNF2/Rad54 hamily
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=87.40  E-value=0.75  Score=34.75  Aligned_cols=49  Identities=18%  Similarity=0.162  Sum_probs=28.4

Q ss_pred             cCCCCCCCccCcHHHHHHHHH---HHhcCCCCcEEEeCCCCCcHHHHHHHHHHHh
Q psy2281           8 YRPNNLQKLDFHCKQANHLRN---LLKEGDFPHLLFYGPSGAGKKTRIMALLKEL   59 (287)
Q Consensus         8 ~~p~~~~~~~~~~~~~~~l~~---~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~   59 (287)
                      ..|..++.-. .+...+.++.   ....+..  .+|.=+.|.|||-.+-+++..+
T Consensus         4 ~~P~~~~~~L-~~yQ~~~v~~~~~~~~~~~g--~iLaDe~GlGKT~~~i~~~~~~   55 (230)
T d1z63a1           4 LEPYNIKANL-RPYQIKGFSWMRFMNKLGFG--ICLADDMGLGKTLQTIAVFSDA   55 (230)
T ss_dssp             CCCCSCSSCC-CHHHHHHHHHHHHHHHTTCC--EEECCCTTSCHHHHHHHHHHHH
T ss_pred             cCchhhhcch-hHHHHHHHHHHHHhhhcCCC--EEEEeCCCCChHHHHHHhhhhh
Confidence            4566666422 2333334433   3333333  6777799999999877765543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.07  E-value=0.14  Score=39.30  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=18.6

Q ss_pred             cCCCCcEEEeCCCCCcHHHHHHHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRIMALLK   57 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~~~l~~   57 (287)
                      .|+.  +++.+|.|+|||+.+-..+-
T Consensus        57 ~g~~--~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          57 RKES--FAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             TTCC--EECCCCBTSCSHHHHHHHHH
T ss_pred             CCCC--EEEEecCCChHHHHHHHHHH
Confidence            5666  99999999999987654443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.03  E-value=0.2  Score=38.19  Aligned_cols=23  Identities=30%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             EEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          38 LLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        38 ~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      +++.|--++|||||+..|.....
T Consensus         6 i~viGHVd~GKTTL~~~Ll~~~g   28 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLMDRG   28 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHB
T ss_pred             EEEEecCCCCHHHHHHHHHHHcC
Confidence            89999999999999998876554

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=86.80  E-value=0.18  Score=38.52  Aligned_cols=24  Identities=33%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             cEEEeCCCCCcHHHHHHHHHHHhC
Q psy2281          37 HLLFYGPSGAGKKTRIMALLKELY   60 (287)
Q Consensus        37 ~~~l~Gp~G~GKTtl~~~l~~~~~   60 (287)
                      ++++.|-..+|||||+.+|.....
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g   34 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSK   34 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcC
Confidence            379999999999999999977654

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=86.04  E-value=3.3  Score=34.23  Aligned_cols=50  Identities=20%  Similarity=0.358  Sum_probs=38.8

Q ss_pred             cCcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          17 DFHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        17 ~~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      ..|+.+++.+..-+++|.. +.++.|-+|+|||.++-.+......++++|-
T Consensus        14 gDQP~aI~~l~~~l~~g~~-~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt   63 (413)
T d1t5la1          14 GDQPQAIAKLVDGLRRGVK-HQTLLGATGTGKTFTISNVIAQVNKPTLVIA   63 (413)
T ss_dssp             TTHHHHHHHHHHHHHHTCS-EEEEEECTTSCHHHHHHHHHHHHTCCEEEEC
T ss_pred             CCCHHHHHHHHHHHhcCCC-cEEEeCCCCcHHHHHHHHHHHHhCCCEEEEe
Confidence            3467778888777777743 3789999999999999888888876666553

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.97  E-value=0.33  Score=36.61  Aligned_cols=30  Identities=30%  Similarity=0.333  Sum_probs=22.3

Q ss_pred             EEEe-CCCCCcHHHHHHHHHHHhC---CCEEEEe
Q psy2281          38 LLFY-GPSGAGKKTRIMALLKELY---GPVIILN   67 (287)
Q Consensus        38 ~~l~-Gp~G~GKTtl~~~l~~~~~---~~~i~id   67 (287)
                      +.++ |..|+||||++-.++..+.   ..++++|
T Consensus         4 Iav~s~KGGvGKTtia~nlA~~la~~g~~VlliD   37 (232)
T d1hyqa_           4 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVD   37 (232)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEe
Confidence            4444 7899999999988776653   2378887

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=83.88  E-value=0.21  Score=40.58  Aligned_cols=28  Identities=25%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             HHHHHhcCCCCcEEEeCCCCCcHHHHHH
Q psy2281          26 LRNLLKEGDFPHLLFYGPSGAGKKTRIM   53 (287)
Q Consensus        26 l~~~~~~g~~~~~~l~Gp~G~GKTtl~~   53 (287)
                      +...+.+|.-.-++-||+.|+|||.++.
T Consensus        76 v~~~~~~G~n~~i~aYGqTGSGKTyTm~  103 (330)
T d1ry6a_          76 IIDLYENGCVCSCFAYGQTGSGKTYTML  103 (330)
T ss_dssp             HHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred             HHHHHhcCCCeEEEeeeccccccceeee
Confidence            4444555643337889999999999974

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=83.59  E-value=3.8  Score=33.79  Aligned_cols=49  Identities=22%  Similarity=0.401  Sum_probs=38.3

Q ss_pred             CcHHHHHHHHHHHhcCCCCcEEEeCCCCCcHHHHHHHHHHHhCCCEEEEe
Q psy2281          18 FHCKQANHLRNLLKEGDFPHLLFYGPSGAGKKTRIMALLKELYGPVIILN   67 (287)
Q Consensus        18 ~~~~~~~~l~~~~~~g~~~~~~l~Gp~G~GKTtl~~~l~~~~~~~~i~id   67 (287)
                      .+..+++.+...+++|..+ ..+.|.+|++|+.++-+++.....++++|-
T Consensus        12 dqp~aI~~l~~~L~~g~~~-~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt   60 (408)
T d1c4oa1          12 DQPKAIAGLVEALRDGERF-VTLLGATGTGKTVTMAKVIEALGRPALVLA   60 (408)
T ss_dssp             THHHHHHHHHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHTCCEEEEE
T ss_pred             CCHHHHHHHHHHHhcCCCc-EEEecCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence            3566788888888877541 689999999999999999988876655554

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.44  E-value=0.58  Score=37.62  Aligned_cols=21  Identities=29%  Similarity=0.540  Sum_probs=16.9

Q ss_pred             cCCCCcEEEeCCCCCcHHHHH
Q psy2281          32 EGDFPHLLFYGPSGAGKKTRI   52 (287)
Q Consensus        32 ~g~~~~~~l~Gp~G~GKTtl~   52 (287)
                      +|.-.-++-||+.|+|||.++
T Consensus        73 ~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          73 EGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             cCCCcceeeecccCCCCceec
Confidence            454333889999999999997