Psyllid ID: psy2360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MPCELGNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDTH
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEEEcccccHHHHHHHccHHHHHHcEEEEEcccEEEEcccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccEEEEccccccHHHHHHHHHHHHHccEEEEEEcccEccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mpcelgnrqisSNIVQKQNDIFNKEFKRQQNAVGRIEKINVtykglpedAELImnknlstpyncaQHMSEMLCDRSVLALIDGvklwdmhrplesdcelqllhfydsdpyhsnrtfwRSCSIMLGSVLSNAFKDTH
Flexible Loop (DISEMBL)
mpcelgnrqissnivqKQNDIFNKEFKrqqnavgriekinvTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLsnafkdth
Low Complexity Region (SEG)
MPCELGNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDTH
Disordered region (IsUnstruct)
********************IFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLS*******
Disordered Region (DISOPRED)
*********ISSNIVQKQNDIFNKEFK*************VTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFK***
Disordered Region (DISEMBL)
********QISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDTH
Disordered Region (DISPRO)
MPC*LGNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDTH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPCELGNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDTH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q9VUJ0	333	39S ribosomal protein L39	yes	N/A	0.904	0.369	0.609	1e-41
Q9JKF7	336	39S ribosomal protein L39	yes	N/A	0.911	0.369	0.460	2e-30
Q9NYK5	338	39S ribosomal protein L39	yes	N/A	0.911	0.366	0.460	3e-30
Q54J66	710	Probable threonine--tRNA	yes	N/A	0.661	0.126	0.385	2e-12
P87144	703	Threonine--tRNA ligase, c	yes	N/A	0.897	0.173	0.308	2e-09
Q68FW7	723	Threonine--tRNA ligase, m	no	N/A	0.566	0.106	0.395	9e-09
Q9D0R2	722	Threonine--tRNA ligase, c	no	N/A	0.639	0.120	0.329	1e-08
Q5XHY5	695	Threonine--tRNA ligase, c	no	N/A	0.639	0.125	0.329	1e-08
P26639	723	Threonine--tRNA ligase, c	no	N/A	0.639	0.120	0.329	1e-08
Q3ZBV8	723	Threonine--tRNA ligase, c	no	N/A	0.639	0.120	0.319	4e-08

>sp|Q9VUJ0|RM39_DROME 39S ribosomal protein L39, mitochondrial OS=Drosophila melanogaster GN=mRpL39 PE=1 SV=2

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 96/123 (78%)

Query: 11  SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
           SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct: 30  SSASLAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct: 90  GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query: 131 AFK 133
           AFK
Sbjct: 150 AFK 152

Drosophila melanogaster (taxid: 7227)

>sp|Q9JKF7|RM39_MOUSE 39S ribosomal protein L39, mitochondrial OS=Mus musculus GN=Mrpl39 PE=2 SV=4

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 86/126 (68%), Gaps = 2/126 (1%)

Query: 12  SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQHMSE 70
           + + + +ND+FN+E  RQ +   R EKI V + G  +   + +MNKN+STPY+CA H+SE
Sbjct: 35  TELTEMRNDLFNREKSRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSE 94

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++MLG V+  
Sbjct: 95  WYCSKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDPDPKEVNKAYWRSCAMMLGCVIER 153

Query: 131 AFKDTH 136
           AFKD +
Sbjct: 154 AFKDDY 159

Mus musculus (taxid: 10090)

>sp|Q9NYK5|RM39_HUMAN 39S ribosomal protein L39, mitochondrial OS=Homo sapiens GN=MRPL39 PE=1 SV=3

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 86/126 (68%), Gaps = 2/126 (1%)

Query: 12  SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQHMSE 70
           + + + +ND+FNKE  RQ +   R EKI V + G  +   + +MNKN+STPY+CA H+SE
Sbjct: 38  TELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSE 97

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++M+G V+  
Sbjct: 98  WYCRKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGCVIER 156

Query: 131 AFKDTH 136
           AFKD +
Sbjct: 157 AFKDEY 162

Homo sapiens (taxid: 9606)

>sp|Q54J66|SYTC1_DICDI Probable threonine--tRNA ligase 1, cytoplasmic OS=Dictyostelium discoideum GN=thrS1 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 55/96 (57%), Gaps = 6/96 (6%)

Query: 37  EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 96
           E INVT   LP+   +   KN +TPY+ A+ +S  L D  V + ++G ++WD+ RPLE+D
Sbjct: 74  EPINVT---LPDGKVVAGIKNKTTPYDIAKGISRGLADSIVSSKVNGEQIWDISRPLEAD 130

Query: 97  CELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
           C LQL  F   D     +TFW S + +LG  +   +
Sbjct: 131 CNLQLCKF---DSEEGKKTFWHSSAHILGQAMERIY 163

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P87144|SYTC_SCHPO Threonine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ths1 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 11/133 (8%)

Query: 3   CELGNRQISSNIVQKQNDIFNK---EFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLS 59
             L N  +    +Q + D+F+K   E+K       R E+I++T   LP+   +      +
Sbjct: 11  ASLDNLSLEIPFIQHRLDLFDKLQKEYKESLATKPR-EEIDIT---LPDGKVIKGTSWET 66

Query: 60  TPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRS 119
           TP + A  +S+ L DR  +A+++G + WD+ RPLE+ C L+L  F D +     R FW S
Sbjct: 67  TPISIAASISKGLADRVTVAIVNG-EPWDLTRPLEASCTLKLCDFNDPE---GKRVFWHS 122

Query: 120 CSIMLGSVLSNAF 132
            + +LG     +F
Sbjct: 123 SAHILGEATELSF 135

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q68FW7|SYTM_RAT Threonine--tRNA ligase, mitochondrial OS=Rattus norvegicus GN=Tars2 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 46  LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
           LPE  ++      +TPY  AQ +S  L D +V A ++G +L+D+ RPLE+DC L+ L F 
Sbjct: 70  LPEGQKVDAVAWNTTPYQLAQQISSTLADTAVAAEVNG-ELYDLDRPLETDCHLRFLTF- 127

Query: 106 DSDPYHSNRTFWRSCSIMLGS 126
             D       FWRS + +LG+
Sbjct: 128 --DSPEGKAVFWRSSAHVLGA 146

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9D0R2|SYTC_MOUSE Threonine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Tars PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
           I VT   LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE+DC 
Sbjct: 82  IKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKV-VWDLDRPLETDCT 137

Query: 99  LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
           L+LL F D +   +   +W S + ++G  +   +
Sbjct: 138 LELLKFEDEE---AQAVYWHSSAHIMGEAMERVY 168

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5XHY5|SYTC_RAT Threonine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Tars PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 7/94 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
           I VT   LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE+DC 
Sbjct: 55  IKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVVAKVNKV-VWDLDRPLETDCT 110

Query: 99  LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
           L+LL F D +   +   +W S + ++G  +   +
Sbjct: 111 LELLKFEDEE---AQAVYWHSSAHIMGEAMERVY 141

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P26639|SYTC_HUMAN Threonine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=TARS PE=1 SV=3

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
           I VT   LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE DC 
Sbjct: 83  IKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCT 138

Query: 99  LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
           L+LL F D +   +   +W S + ++G  +   +
Sbjct: 139 LELLKFEDEE---AQAVYWHSSAHIMGEAMERVY 169

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q3ZBV8|SYTC_BOVIN Threonine--tRNA ligase, cytoplasmic OS=Bos taurus GN=TARS PE=2 SV=1

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
           I VT   LP+  ++      +TPY  A  +S+ L D +V+A ++   +WD+ RPLE DC 
Sbjct: 83  IKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNKA-VWDLDRPLEEDCT 138

Query: 99  LQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
           L+LL F D +   +   +W S + ++G  +   +
Sbjct: 139 LELLKFEDEE---AQAVYWHSSAHIMGEAMERVY 169

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
289741267	329	mitochondrial ribosomal protein L39 [Glo	0.911	0.376	0.629	4e-40
195494429	333	GE19994 [Drosophila yakuba] gi|194180937	0.904	0.369	0.609	5e-40
193652458	341	PREDICTED: 39S ribosomal protein L39, mi	0.941	0.375	0.612	5e-40
195327660	333	GM24519 [Drosophila sechellia] gi|195590	0.904	0.369	0.609	5e-40
239788599	201	ACYPI002715 [Acyrthosiphon pisum]	0.941	0.636	0.612	8e-40
194751137	333	GF10636 [Drosophila ananassae] gi|190625	0.941	0.384	0.601	1e-39
24664387	333	mitochondrial ribosomal protein L39 [Dro	0.904	0.369	0.609	1e-39
17946007	310	RE50565p [Drosophila melanogaster]	0.904	0.396	0.609	3e-39
194871047	333	GG13700 [Drosophila erecta] gi|190654558	0.904	0.369	0.593	3e-39
195454743	331	GK10572 [Drosophila willistoni] gi|19417	0.926	0.380	0.579	7e-39

>gi|289741267|gb|ADD19381.1| mitochondrial ribosomal protein L39 [Glossina morsitans morsitans]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 78/124 (62%), Positives = 96/124 (77%)

Query: 11  SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
           SS  ++++N++F  E KRQ+  VGRIEKI V Y GLPED  L MN++LSTPYNCAQH+SE
Sbjct: 27  SSLSLKQRNELFTAEQKRQRENVGRIEKIEVRYLGLPEDVTLAMNRDLSTPYNCAQHLSE 86

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C RSVL+L+DG   WDMHRPL++ C LQLLHF  SDP+  N+TFWRSCS MLG+ L N
Sbjct: 87  GHCKRSVLSLVDGNVPWDMHRPLQASCTLQLLHFTVSDPHVVNKTFWRSCSFMLGAALQN 146

Query: 131 AFKD 134
           AFK+
Sbjct: 147 AFKE 150

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195494429|ref|XP_002094836.1| GE19994 [Drosophila yakuba] gi|194180937|gb|EDW94548.1| GE19994 [Drosophila yakuba]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 96/123 (78%)

Query: 11  SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
           SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct: 30  SSASIAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNSNISTPFNCAQHLSE 89

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct: 90  GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query: 131 AFK 133
           AFK
Sbjct: 150 AFK 152

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193652458|ref|XP_001949601.1| PREDICTED: 39S ribosomal protein L39, mitochondrial-like [Acyrthosiphon pisum]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 96/129 (74%), Gaps = 1/129 (0%)

Query: 6   GNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCA 65
            N    + IV  QN++F+ E KRQ+ AVGRIEKI V Y G+PE+  L MNK +STP++CA
Sbjct: 26  ANIHPKTEIVAYQNNLFDNEQKRQREAVGRIEKITVKYIGVPENVTLSMNKGISTPFHCA 85

Query: 66  QHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF-YDSDPYHSNRTFWRSCSIML 124
           QH+SEML  RS LALID   LWDMHRPLESDCEL  +H  Y  DPYH NR +WRSCS++L
Sbjct: 86  QHISEMLVKRSGLALIDETHLWDMHRPLESDCELTFMHAQYLPDPYHFNRAYWRSCSLIL 145

Query: 125 GSVLSNAFK 133
           G+V+S AFK
Sbjct: 146 GAVISKAFK 154

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195327660|ref|XP_002030536.1| GM24519 [Drosophila sechellia] gi|195590346|ref|XP_002084907.1| GD12590 [Drosophila simulans] gi|194119479|gb|EDW41522.1| GM24519 [Drosophila sechellia] gi|194196916|gb|EDX10492.1| GD12590 [Drosophila simulans]

 Score =  168 bits (426), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 96/123 (78%)

Query: 11  SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
           SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct: 30  SSASIAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct: 90  GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query: 131 AFK 133
           AFK
Sbjct: 150 AFK 152

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239788599|dbj|BAH70972.1| ACYPI002715 [Acyrthosiphon pisum]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 79/129 (61%), Positives = 96/129 (74%), Gaps = 1/129 (0%)

Query: 6   GNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCA 65
            N    + IV  QN++F+ E KRQ+ AVGRIEKI V Y G+PE+  L MNK +STP++CA
Sbjct: 26  ANIHPKTEIVAYQNNLFDNEQKRQREAVGRIEKITVKYIGVPENVTLSMNKGISTPFHCA 85

Query: 66  QHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF-YDSDPYHSNRTFWRSCSIML 124
           QH+SEML  RS LALID   LWDMHRPLESDCEL  +H  Y  DPYH NR +WRSCS++L
Sbjct: 86  QHISEMLVKRSGLALIDETHLWDMHRPLESDCELTFMHAQYLPDPYHFNRAYWRSCSLIL 145

Query: 125 GSVLSNAFK 133
           G+V+S AFK
Sbjct: 146 GAVISKAFK 154

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194751137|ref|XP_001957883.1| GF10636 [Drosophila ananassae] gi|190625165|gb|EDV40689.1| GF10636 [Drosophila ananassae]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/128 (60%), Positives = 96/128 (75%)

Query: 6   GNRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCA 65
            N   SS+ + K+N++FN+E KRQ++AVGRI+KI V Y GLPED  L+MN N+STPYNCA
Sbjct: 25  ANFSASSSSIAKRNELFNQEQKRQRDAVGRIDKIEVRYLGLPEDVTLVMNANISTPYNCA 84

Query: 66  QHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 125
           QH+SE    RS LALIDG   WDMHRPL+  C LQLLHF  S+P+  N+ FWR+CS MLG
Sbjct: 85  QHLSEGHKRRSALALIDGSVPWDMHRPLQESCTLQLLHFQVSEPHVVNKAFWRTCSFMLG 144

Query: 126 SVLSNAFK 133
           + L+ AFK
Sbjct: 145 AALNRAFK 152

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24664387|ref|NP_524075.2| mitochondrial ribosomal protein L39 [Drosophila melanogaster] gi|27923994|sp|Q9VUJ0.2|RM39_DROME RecName: Full=39S ribosomal protein L39, mitochondrial; Short=MRP-L39; AltName: Full=MRP-L5 gi|23093441|gb|AAF49686.2| mitochondrial ribosomal protein L39 [Drosophila melanogaster] gi|346716412|gb|AEO46465.1| RE54042p1 [Drosophila melanogaster]

 Score =  167 bits (424), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 96/123 (78%)

Query: 11  SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
           SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct: 30  SSASLAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct: 90  GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query: 131 AFK 133
           AFK
Sbjct: 150 AFK 152

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17946007|gb|AAL49047.1| RE50565p [Drosophila melanogaster]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 96/123 (78%)

Query: 11  SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
           SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct: 30  SSASLAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct: 90  GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query: 131 AFK 133
           AFK
Sbjct: 150 AFK 152

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194871047|ref|XP_001972775.1| GG13700 [Drosophila erecta] gi|190654558|gb|EDV51801.1| GG13700 [Drosophila erecta]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 73/123 (59%), Positives = 96/123 (78%)

Query: 11  SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
           SS  + ++N++FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct: 30  SSASIAQRNELFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNSNISTPFNCAQHLSE 89

Query: 71  MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
             C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct: 90  GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query: 131 AFK 133
           AFK
Sbjct: 150 AFK 152

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195454743|ref|XP_002074382.1| GK10572 [Drosophila willistoni] gi|194170467|gb|EDW85368.1| GK10572 [Drosophila willistoni]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 73/126 (57%), Positives = 95/126 (75%)

Query: 9   QISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHM 68
           + SS+ +  +N++FN+E +RQQ+AVGRIEKI + Y GLPED  L+MNK++STPYNCAQH+
Sbjct: 26  KFSSSAIGTRNELFNQEQRRQQDAVGRIEKIEIRYLGLPEDVTLLMNKHISTPYNCAQHL 85

Query: 69  SEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVL 128
           SE  C RS LALIDG   WDMHRPL+  C LQLL F  S+P+  N+ FWR+CS +LG+ L
Sbjct: 86  SEGHCKRSALALIDGTIPWDMHRPLQESCTLQLLPFNVSEPHVVNKAFWRTCSFLLGAAL 145

Query: 129 SNAFKD 134
             +FK 
Sbjct: 146 HKSFKS 151

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
FB|FBgn0036462	333	mRpL39 "mitochondrial ribosoma	0.904	0.369	0.609	3.4e-38
UNIPROTKB|F1NDS2	348	MRPL39 "Uncharacterized protei	0.948	0.370	0.480	4.2e-31
UNIPROTKB|F1SHP6	337	LOC100521866 "Uncharacterized	0.933	0.376	0.469	1.4e-30
UNIPROTKB|F1P8E4	335	MRPL39 "Uncharacterized protei	0.948	0.385	0.450	7.9e-30
MGI|MGI:1351620	336	Mrpl39 "mitochondrial ribosoma	0.911	0.369	0.460	1e-29
UNIPROTKB|C9JG87	297	MRPL39 "39S ribosomal protein	0.933	0.427	0.461	1.3e-29
UNIPROTKB|Q9NYK5	338	MRPL39 "39S ribosomal protein	0.933	0.375	0.461	1.3e-29
UNIPROTKB|Q05B74	335	MRPL39 "Mitochondrial ribosoma	0.933	0.379	0.446	2.1e-29
ZFIN|ZDB-GENE-030131-6520	342	mrpl39 "mitochondrial ribosoma	0.919	0.365	0.449	5.9e-25
UNIPROTKB|I3LHX5	245	LOC100621532 "Uncharacterized	0.5	0.277	0.478	1.3e-15

FB|FBgn0036462 mRpL39 "mitochondrial ribosomal protein L39" [Drosophila melanogaster (taxid:7227)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 75/123 (60%), Positives = 96/123 (78%)

Query:    11 SSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSE 70
             SS  + K+ND+FN+E +RQ++AVGRI+KI V Y GLPED  L+MN N+STP+NCAQH+SE
Sbjct:    30 SSASLAKRNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSE 89

Query:    71 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
               C RS LALIDG   WDMHRPL+  C LQLL+F+ S+P+  N+ FWR+CS MLG+ L+ 
Sbjct:    90 GHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNR 149

Query:   131 AFK 133
             AFK
Sbjct:   150 AFK 152

GO:0006435 "threonyl-tRNA aminoacylation" evidence=ISS

GO:0004829 "threonine-tRNA ligase activity" evidence=ISS;NAS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS;NAS

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NDS2 MRPL39 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 63/131 (48%), Positives = 89/131 (67%)

Query:     7 NRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCA 65
             +R  S  +++ +N++F KE +RQ +   RIEKI V Y G      + +MNK LSTPYNCA
Sbjct:    27 SRLTSDEVIRMRNELFTKEKERQLSLYPRIEKIEVKYMGKSHPGSVFVMNKALSTPYNCA 86

Query:    66 QHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 125
              H+SE  C +SVLAL+DG ++WDM+RPL   CE+Q L F D DP   N+ +WRSC++++ 
Sbjct:    87 MHLSEWHCKKSVLALVDG-EVWDMYRPLTKSCEIQFLTFKDEDPEEVNKAYWRSCAMIMA 145

Query:   126 SVLSNAFKDTH 136
             +VL  AFKD +
Sbjct:   146 NVLKRAFKDEY 156

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1SHP6 LOC100521866 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 61/130 (46%), Positives = 90/130 (69%)

Query:     9 QIS-SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQ 66
             Q+S + +++ QND+FNKE  RQ +   R EKI V + G  +   + +MNKN+STPY+CA 
Sbjct:    34 QLSPTELIEMQNDLFNKEKNRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAM 93

Query:    67 HMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGS 126
             H+SE  C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++M+G 
Sbjct:    94 HLSEWYCRKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGC 152

Query:   127 VLSNAFKDTH 136
             V+  AFKD +
Sbjct:   153 VIERAFKDEY 162

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1P8E4 MRPL39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 59/131 (45%), Positives = 89/131 (67%)

Query:     7 NRQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCA 65
             +R   + +++ +ND+FNKE  RQ +   R EKI V + G  +   + +MNKN+STPY+CA
Sbjct:    30 SRLSPAELIEMRNDLFNKEKTRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNVSTPYSCA 89

Query:    66 QHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 125
              H+SE  C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++M+G
Sbjct:    90 MHLSEWYCRKSILALVDG-QPWDMYKPLTKSCEIEFLTFKDRDPGEVNKAYWRSCAMMMG 148

Query:   126 SVLSNAFKDTH 136
              V+  AFKD +
Sbjct:   149 CVIERAFKDEY 159

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1351620 Mrpl39 "mitochondrial ribosomal protein L39" [Mus musculus (taxid:10090)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 58/126 (46%), Positives = 86/126 (68%)

Query:    12 SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQHMSE 70
             + + + +ND+FN+E  RQ +   R EKI V + G  +   + +MNKN+STPY+CA H+SE
Sbjct:    35 TELTEMRNDLFNREKSRQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAMHLSE 94

Query:    71 MLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSN 130
               C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++MLG V+  
Sbjct:    95 WYCSKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDPDPKEVNKAYWRSCAMMLGCVIER 153

Query:   131 AFKDTH 136
             AFKD +
Sbjct:   154 AFKDDY 159

GO:0000002 "mitochondrial genome maintenance" evidence=TAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|C9JG87 MRPL39 "39S ribosomal protein L39, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 60/130 (46%), Positives = 89/130 (68%)

Query:     9 QIS-SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQ 66
             Q+S + + + +ND+FNKE  RQ +   R EKI V + G  +   + +MNKN+STPY+CA 
Sbjct:    34 QLSPTELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAM 93

Query:    67 HMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGS 126
             H+SE  C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++M+G 
Sbjct:    94 HLSEWYCRKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGC 152

Query:   127 VLSNAFKDTH 136
             V+  AFKD +
Sbjct:   153 VIERAFKDEY 162

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9NYK5 MRPL39 "39S ribosomal protein L39, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 60/130 (46%), Positives = 89/130 (68%)

Query:     9 QIS-SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQ 66
             Q+S + + + +ND+FNKE  RQ +   R EKI V + G  +   + +MNKN+STPY+CA 
Sbjct:    34 QLSPTELTEMRNDLFNKEKARQLSLTPRTEKIEVKHVGKTDPGTVFVMNKNISTPYSCAM 93

Query:    67 HMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGS 126
             H+SE  C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++M+G 
Sbjct:    94 HLSEWYCRKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDCDPGEVNKAYWRSCAMMMGC 152

Query:   127 VLSNAFKDTH 136
             V+  AFKD +
Sbjct:   153 VIERAFKDEY 162

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005761 "mitochondrial ribosome" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q05B74 MRPL39 "Mitochondrial ribosomal protein L39" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 58/130 (44%), Positives = 90/130 (69%)

Query:     9 QIS-SNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLPEDAEL-IMNKNLSTPYNCAQ 66
             Q+S + +++ QND+FNKE  RQ +   R EKI V + G  +   + ++NKN+STPY+CA 
Sbjct:    31 QLSPTELIEMQNDLFNKEKNRQLSLTPRTEKIEVKHVGKTDPGTIFVLNKNVSTPYSCAM 90

Query:    67 HMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGS 126
             H+SE  C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++++G 
Sbjct:    91 HLSEWYCRKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMIMGC 149

Query:   127 VLSNAFKDTH 136
             V+  AFK+ +
Sbjct:   150 VIERAFKEEY 159

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6520 mrpl39 "mitochondrial ribosomal protein L39" [Danio rerio (taxid:7955)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 58/129 (44%), Positives = 86/129 (66%)

Query:     8 RQISSNIVQKQNDIFNKEFKRQQNAVGRIEKINVTYKGLP--EDAELIMNKNLSTPYNCA 65
             R  S+ ++ +++  F++E  RQ+    R+EK+ V  +G P  +   L+MN+ LSTPY+CA
Sbjct:    24 RLSSAAVLAQRSAQFSREQLRQRALQPRVEKVEVQLQG-PGLQGTLLVMNRGLSTPYSCA 82

Query:    66 QHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLG 125
             +H+SE   + S LAL+DG + W MH+PL   CEL LL F D+DP   N+ +WRSC+ +LG
Sbjct:    83 RHLSEWHVNSSALALVDG-QPWHMHKPLTRSCELTLLTFRDADPQTLNQAYWRSCAALLG 141

Query:   126 SVLSNAFKD 134
              VL +AFKD
Sbjct:   142 LVLESAFKD 150

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|I3LHX5 LOC100621532 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 33/69 (47%), Positives = 49/69 (71%)

Query:    68 MSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSV 127
             +SE  C +S+LAL+DG + WDM++PL   CE++ L F D DP   N+ +WRSC++M+G V
Sbjct:     3 LSEWYCRKSILALVDG-QPWDMYKPLTKSCEIKFLTFKDDDPGEVNKAYWRSCAMMMGCV 61

Query:   128 LSNAFKDTH 136
             +  AFKD +
Sbjct:    62 IERAFKDEY 70

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VUJ0	RM39_DROME	No assigned EC number	0.6097	0.9044	0.3693	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
PLN02908	686	PLN02908, PLN02908, threonyl-tRNA synthetase	6e-17
cd01667	61	cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threony	9e-17
pfam02824	60	pfam02824, TGS, TGS domain	7e-06
PRK00413	638	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	5e-04

>gnl|CDD|178496 PLN02908, PLN02908, threonyl-tRNA synthetase

 Score = 75.6 bits (186), Expect = 6e-17
 Identities = 42/120 (35%), Positives = 67/120 (55%), Gaps = 9/120 (7%)

Query: 15  VQKQNDIFNKEFKRQQNAVGRI--EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEML 72
           ++K+ ++F K   RQ   +     + I VT   LP+ A     K ++TP + A+ +S+ L
Sbjct: 26  IKKRIELFEKIQARQLARLESAGGDPIKVT---LPDGAVKDGKKWVTTPMDIAKEISKGL 82

Query: 73  CDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAF 132
            + +++A +DGV LWDM RPLE DC+L+L  F D +      TFW S + +LG  L   +
Sbjct: 83  ANSALIAQVDGV-LWDMTRPLEGDCKLKLFKFDDDE---GRDTFWHSSAHILGEALELEY 138

Length = 686

>gnl|CDD|133437 cd01667, TGS_ThrRS_N, TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA

 Score = 68.7 bits (169), Expect = 9e-17
 Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 5/66 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
           I +T   LP+ +     K  +TP + A+ +S  L  ++V A ++G +L D+ RPLE DCE
Sbjct: 1   IKIT---LPDGSVKEFPKG-TTPLDIAKSISPGLAKKAVAAKVNG-ELVDLSRPLEEDCE 55

Query: 99  LQLLHF 104
           L+++ F
Sbjct: 56  LEIITF 61

In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood. Length = 61

>gnl|CDD|217243 pfam02824, TGS, TGS domain

 Score = 40.5 bits (96), Expect = 7e-06
 Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 59  STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLL 102
           STP + A  +   L  + + A ++G +   +   LE    ++++
Sbjct: 17  STPEDFAYAIHTDLGKKFIGAKVNG-QRVGLDHVLEDGDVVEIV 59

The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 60

>gnl|CDD|234752 PRK00413, thrS, threonyl-tRNA synthetase; Reviewed

 Score = 38.1 bits (90), Expect = 5e-04
 Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 59  STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
            T  + A  +S  L   +V   ++G +L D+  P+E D  L+++   D +          
Sbjct: 18  VTVADVAASISPGLAKAAVAGKVNG-ELVDLSTPIEEDASLEIITAKDEE---GLEIIRH 73

Query: 119 SCSIMLGSVLSNAFKDTH 136
           S + +L   +   + D  
Sbjct: 74  SAAHLLAQAVKRLYPDAK 91

Length = 638

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PLN02908	686	threonyl-tRNA synthetase	99.94
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.76
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	99.7
KOG1637|consensus	560		99.68
PF02824	60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	99.42
cd01667	61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	99.07
cd01616	60	TGS The TGS domain, named after the ThrRS, GTPase,	98.77
cd01668	60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	98.56
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	97.94
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	97.45
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	97.44
PRK05659	66	sulfur carrier protein ThiS; Validated	97.38
PRK07440	70	hypothetical protein; Provisional	97.33
PRK08364	70	sulfur carrier protein ThiS; Provisional	97.23
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	97.17
PRK07696	67	sulfur carrier protein ThiS; Provisional	97.12
PLN02837	614	threonine-tRNA ligase	97.09
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	97.09
PRK08053	66	sulfur carrier protein ThiS; Provisional	97.05
PRK06944	65	sulfur carrier protein ThiS; Provisional	97.0
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	96.95
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	96.93
PRK06488	65	sulfur carrier protein ThiS; Validated	96.9
PRK06083	84	sulfur carrier protein ThiS; Provisional	96.71
PRK06437	67	hypothetical protein; Provisional	96.58
PRK05863	65	sulfur carrier protein ThiS; Provisional	96.19
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	96.12
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	95.27
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	94.99
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	94.62
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	94.55
PRK01777	95	hypothetical protein; Validated	94.36
PF14453	57	ThiS-like: ThiS-like ubiquitin	93.55
cd01666	75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	92.85
cd01669	76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	91.99
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	91.79
PRK01584	594	alanyl-tRNA synthetase; Provisional	86.18
PRK11130	81	moaD molybdopterin synthase small subunit; Provisi	85.44
TIGR01687	88	moaD_arch MoaD family protein, archaeal. Members o	84.14

>PLN02908 threonyl-tRNA synthetase

Probab=99.94  E-value=7.5e-27  Score=208.22  Aligned_cols=115  Identities=37%  Similarity=0.634  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhc--CcCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec
Q psy2360          12 SNIVQKQNDIFNKEFKRQQNAVG--RIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM   89 (136)
Q Consensus        12 ~~~~~~r~~lf~~~~~~~~~~~~--~~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL   89 (136)
                      |.|+++|++||++||++|+++++  +.++|+|++   +||+.+++++++|||.+||+++++.+++.+++|+|||+ +|||
T Consensus        23 ~~~~~~r~~~f~~~~~~~~~~~~~~~~~~i~i~~---~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v~a~Vng~-l~dL   98 (686)
T PLN02908         23 SAVIKKRIELFEKIQARQLARLESAGGDPIKVTL---PDGAVKDGKKWVTTPMDIAKEISKGLANSALIAQVDGV-LWDM   98 (686)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhhhccCCceEEEe---CCCceEeecCCCCCHHHHHHHhCccchhhcEEEEECCE-Eeec
Confidence            38999999999999999999998  447899999   89999999887899999999999999999999999999 9999


Q ss_pred             ccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcC
Q psy2360          90 HRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFK  133 (136)
Q Consensus        90 ~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp  133 (136)
                      ++|+++||+|+|++++|++|+   ++||||++|||++|++++|+
T Consensus        99 ~~~l~~d~~le~l~~~~~eg~---~~y~hS~ahlL~~A~~~~~~  139 (686)
T PLN02908         99 TRPLEGDCKLKLFKFDDDEGR---DTFWHSSAHILGEALELEYG  139 (686)
T ss_pred             CccccCCCeeEEeccccHHHH---HHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999   99999999999999999994

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.76  E-value=2.6e-18  Score=152.15  Aligned_cols=89  Identities=20%  Similarity=0.319  Sum_probs=84.7

Q ss_pred             ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHH
Q psy2360          38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFW  117 (136)
Q Consensus        38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyr  117 (136)
                      .++|++   +||+.++++. ++|+.+||+++++.+.+.+++|+|||+ ++||++++++||+|+|++++|++|.   ++||
T Consensus         5 mi~i~~---~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~-l~dL~~~i~~d~~i~fv~~~~~~g~---~iy~   76 (639)
T PRK12444          5 MIEIKF---PDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDK-LYDLRRNLEEDAEVEIITIDSNEGV---EIAR   76 (639)
T ss_pred             CeEEEe---CCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCE-EEEcCcccCCCCeEEEecCCChHHH---HHHH
Confidence            378888   8899999998 599999999999988999999999999 9999999999999999999999999   9999


Q ss_pred             HHHHHHHHHHHHHhcCC
Q psy2360         118 RSCSIMLGSVLSNAFKD  134 (136)
Q Consensus       118 hS~ahlLa~Av~~lfp~  134 (136)
                      ||++|||++|++++||+
T Consensus        77 hS~~hlL~~A~~~~~~~   93 (639)
T PRK12444         77 HSAAHILAQAVKRLYGD   93 (639)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999999986

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.70  E-value=6.2e-17  Score=142.78  Aligned_cols=88  Identities=22%  Similarity=0.347  Sum_probs=83.6

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHH
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR  118 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrh  118 (136)
                      ++|++   ++|..++++. ++|+.|+|+.++....+.+++|+|||+ ++||+++++.||+|+|+++++++|+   ++|||
T Consensus         2 ~~i~~---~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~-l~dL~~~l~~d~~Vefi~~~~~~g~---~~y~h   73 (638)
T PRK00413          2 IKITL---PDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGE-LVDLSTPIEEDASLEIITAKDEEGL---EIIRH   73 (638)
T ss_pred             cEEEe---CCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCE-EeeCCccccCCCceeeeeccchhhH---HHHhh
Confidence            57788   7899999999 599999999999988899999999999 9999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHhcCC
Q psy2360         119 SCSIMLGSVLSNAFKD  134 (136)
Q Consensus       119 S~ahlLa~Av~~lfp~  134 (136)
                      |++|||+.|++++||+
T Consensus        74 S~~hll~~A~~~~~~~   89 (638)
T PRK00413         74 SAAHLLAQAVKRLYPD   89 (638)
T ss_pred             hHHHHHHHHHHHHcCC
Confidence            9999999999999985

>KOG1637|consensus

Probab=99.68  E-value=7.6e-18  Score=143.93  Aligned_cols=82  Identities=39%  Similarity=0.722  Sum_probs=79.7

Q ss_pred             CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHH
Q psy2360          47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGS  126 (136)
Q Consensus        47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~  126 (136)
                      |||+.++..+|.|||++||.. |..++++++.++|||. +|||++|++.|| +|+++|+|++|.   .+||||+||+|++
T Consensus         6 pdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~-~~Dl~rp~e~~~-lell~f~~~~~k---~vfwhssahvlg~   79 (560)
T KOG1637|consen    6 PDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGV-LWDLDRPLEGDC-LELLKFDDDEGK---DVFWHSSAHVLGE   79 (560)
T ss_pred             CCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCc-eeccCCcchhhH-HHHccCCCcccc---eeeeehhhhHhhH
Confidence            999999999999999999999 8899999999999999 999999999999 999999999999   9999999999999


Q ss_pred             HHHHhcCC
Q psy2360         127 VLSNAFKD  134 (136)
Q Consensus       127 Av~~lfp~  134 (136)
                      |+++.|+.
T Consensus        80 a~e~~~g~   87 (560)
T KOG1637|consen   80 ALEQEYGA   87 (560)
T ss_pred             HHHHhcCe
Confidence            99999974

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []

Probab=99.42  E-value=7.2e-13  Score=84.87  Aligned_cols=60  Identities=27%  Similarity=0.407  Sum_probs=55.0

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      |.|++   |||+.+++++| +|+.|+|+.+++++.+.+++|+|||+ ++||++||+++|.|+++|
T Consensus         1 I~v~l---pdG~~~~~~~g-~T~~d~A~~I~~~l~~~~~~A~Vng~-~vdl~~~L~~~d~v~iiT   60 (60)
T PF02824_consen    1 IRVYL---PDGSIKELPEG-STVLDVAYSIHSSLAKRAVAAKVNGQ-LVDLDHPLEDGDVVEIIT   60 (60)
T ss_dssp             EEEEE---TTSCEEEEETT-BBHHHHHHHHSHHHHHCEEEEEETTE-EEETTSBB-SSEEEEEEE
T ss_pred             CEEEC---CCCCeeeCCCC-CCHHHHHHHHCHHHHhheeEEEEcCE-ECCCCCCcCCCCEEEEEC
Confidence            45566   99999999995 99999999999999999999999999 999999999999999986

The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA

Probab=99.07  E-value=6.7e-10  Score=68.12  Aligned_cols=60  Identities=37%  Similarity=0.643  Sum_probs=53.8

Q ss_pred             EEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          40 NVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        40 ~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      .+++   ++|..+.++. ++|+.++++.++....+.++++++||+ ++||++++.++++|+|+++
T Consensus         2 ~i~~---~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~-~~dL~~~l~~~~~ie~i~~   61 (61)
T cd01667           2 KITL---PDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGE-LVDLSRPLEEDCELEIITF   61 (61)
T ss_pred             EEEc---CCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCE-EecCCcCcCCCCEEEEEeC
Confidence            4556   7888889988 699999999998877789999999999 9999999999999999985

In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin

Probab=98.77  E-value=3.3e-08  Score=59.99  Aligned_cols=55  Identities=20%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      ++|..+.+++ ++|+.++++.+.....+.++++.+||+ ++||++++.+++.|+|++
T Consensus         6 ~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~-~~~l~~~l~~~~~i~~i~   60 (60)
T cd01616           6 PDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQ-LVDLSYTLQDGDTVSIVT   60 (60)
T ss_pred             CCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCE-ECCCCcCcCCCCEEEEeC
Confidence            6788999988 599999999998877789999999999 999999999999999985

TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response

Probab=98.56  E-value=3.2e-07  Score=56.99  Aligned_cols=55  Identities=16%  Similarity=0.208  Sum_probs=50.2

Q ss_pred             CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      ++|+.++++. ++|+.++++.++....+.++++.+||+ +.|+++++.+++.|++++
T Consensus         6 ~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~-~vdl~~~l~~~~~ve~v~   60 (60)
T cd01668           6 PKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGK-LVPLSTVLKDGDIVEIIT   60 (60)
T ss_pred             CCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCE-ECCCCCCCCCCCEEEEEC
Confidence            7899999988 599999999988877789999999999 999999999999999875

RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=97.94  E-value=8.7e-06  Score=72.52  Aligned_cols=46  Identities=17%  Similarity=0.404  Sum_probs=36.9

Q ss_pred             ceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCC
Q psy2360          76 SVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD  134 (136)
Q Consensus        76 iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~  134 (136)
                      ++++.+||.  +|+..        +.++..+.+|+   .++|||+|||||+||+++||+
T Consensus         2 ~~~~~~~~~--~~~~~--------~~~~~~~~~~~---~~~rhs~ah~l~~av~~l~p~   47 (589)
T COG0441           2 ALAIHVDGE--LDLKD--------EIITAEDEEGL---EIIRHSCAHVLAQAVKRLYPD   47 (589)
T ss_pred             ceEEEcccc--eeccc--------cccCccCccch---hhhhhHHHHHHHHHHHHhCCC
Confidence            678899994  66655        33444444999   999999999999999999997

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=97.45  E-value=0.0008  Score=61.19  Aligned_cols=61  Identities=15%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCc
Q psy2360          47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPY  110 (136)
Q Consensus        47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~  110 (136)
                      |.|..+..+.| .||.|+|-.+-.+.....++|+|||+ ++.|+++|+.+..||+||-.. .+-
T Consensus       394 PkG~vi~LP~G-atplDFAY~vHt~iG~~c~gAkVnG~-ivpl~~~Lk~Gd~VEIit~k~-~~P  454 (701)
T COG0317         394 PKGKVIDLPKG-ATPLDFAYAVHTDIGHRCIGAKVNGR-IVPLTTKLQTGDQVEIITSKH-AGP  454 (701)
T ss_pred             CCCCEEeCCCC-CcchhhhhhhhchhcceeeEEEECCE-EeccceecCCCCEEEEEeCCC-CCC
Confidence            88999999995 99999999999999999999999999 999999999999999999887 444

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=97.44  E-value=0.0003  Score=63.99  Aligned_cols=59  Identities=19%  Similarity=0.256  Sum_probs=55.5

Q ss_pred             CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCC
Q psy2360          47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDS  107 (136)
Q Consensus        47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~  107 (136)
                      |+|..+..+.| .||.|+|-.+-.+.....++|+|||+ ++.|+++|+.+..||++|-+..
T Consensus       393 P~G~v~~LP~G-aT~lDFAY~iHt~iG~~c~gAkVNg~-~vpL~~~L~~Gd~VeIiT~~~~  451 (702)
T PRK11092        393 PEGRIVELPAG-ATPVDFAYAVHTDIGHACVGARVDRQ-PYPLSQPLTSGQTVEIITAPGA  451 (702)
T ss_pred             CCCCEEeCCCC-CchhhhhHhhCchhhceeEEEEECCE-ECCCCccCCCCCEEEEEeCCCC
Confidence            89999999994 99999999999999999999999999 9999999999999999997653

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=97.38  E-value=0.0009  Score=42.71  Aligned_cols=58  Identities=10%  Similarity=0.108  Sum_probs=47.2

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      |+|++    +|+.+++++ ++|+.++++....  ...-+++.+||. +..    .+++++++..||++.+
T Consensus         1 m~i~v----NG~~~~~~~-~~tl~~lL~~l~~--~~~~vav~vNg~-iv~r~~~~~~~l~~gD~vei~~~   62 (66)
T PRK05659          1 MNIQL----NGEPRELPD-GESVAALLAREGL--AGRRVAVEVNGE-IVPRSQHASTALREGDVVEIVHA   62 (66)
T ss_pred             CEEEE----CCeEEEcCC-CCCHHHHHHhcCC--CCCeEEEEECCe-EeCHHHcCcccCCCCCEEEEEEE
Confidence            46788    899999988 5999999988654  345566779998 776    8889999999999875

>PRK07440 hypothetical protein; Provisional

Probab=97.33  E-value=0.0011  Score=43.40  Aligned_cols=59  Identities=10%  Similarity=0.104  Sum_probs=50.2

Q ss_pred             ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      .|+|++    +|+.++++. ++|+.++++.+..  ....+++.+||+ +..    -.+++.++..||++++
T Consensus         4 ~m~i~v----NG~~~~~~~-~~tl~~lL~~l~~--~~~~vav~~N~~-iv~r~~w~~~~L~~gD~IEIv~~   66 (70)
T PRK07440          4 PITLQV----NGETRTCSS-GTSLPDLLQQLGF--NPRLVAVEYNGE-ILHRQFWEQTQVQPGDRLEIVTI   66 (70)
T ss_pred             ceEEEE----CCEEEEcCC-CCCHHHHHHHcCC--CCCeEEEEECCE-EeCHHHcCceecCCCCEEEEEEE
Confidence            578888    899999988 5999999987654  457899999999 877    7788999999999986

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=97.23  E-value=0.0016  Score=42.47  Aligned_cols=59  Identities=14%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             ceEEEeeeCCCCc----EEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          38 KINVTYKGLPEDA----ELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        38 ~i~i~~~~~~dg~----~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      .|+|++    +|+    .++++. ++|+.++++.+...  ...++..+||+ +...++++.++.+|+++.+
T Consensus         4 mm~v~v----ng~~~~~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vNg~-iv~~~~~l~~gD~Veii~~   66 (70)
T PRK08364          4 MIRVKV----IGRGIEKEIEWRK-GMKVADILRAVGFN--TESAIAKVNGK-VALEDDPVKDGDYVEVIPV   66 (70)
T ss_pred             EEEEEE----eccccceEEEcCC-CCcHHHHHHHcCCC--CccEEEEECCE-ECCCCcCcCCCCEEEEEcc
Confidence            467777    555    677777 59999999987543  46789999999 8778999999999999875

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=97.17  E-value=0.0014  Score=41.91  Aligned_cols=56  Identities=13%  Similarity=0.159  Sum_probs=46.6

Q ss_pred             EEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecc----cccCCCCceEEecc
Q psy2360          41 VTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF  104 (136)
Q Consensus        41 i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~----~~l~~d~~Ie~i~~  104 (136)
                      |++    +|+.++++. ++|+.++++.+...  ...+++.+||+ +.+..    +++.++.+|+++.+
T Consensus         2 i~i----Ng~~~~~~~-~~tv~~ll~~l~~~--~~~i~V~vNg~-~v~~~~~~~~~L~~gD~V~ii~~   61 (65)
T cd00565           2 ITV----NGEPREVEE-GATLAELLEELGLD--PRGVAVALNGE-IVPRSEWASTPLQDGDRIEIVTA   61 (65)
T ss_pred             EEE----CCeEEEcCC-CCCHHHHHHHcCCC--CCcEEEEECCE-EcCHHHcCceecCCCCEEEEEEe
Confidence            566    788999988 59999999987643  45667889999 98888    89999999999875

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=97.12  E-value=0.002  Score=41.76  Aligned_cols=59  Identities=8%  Similarity=0.176  Sum_probs=47.5

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecc----cccCCCCceEEecc
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF  104 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~----~~l~~d~~Ie~i~~  104 (136)
                      |+|++    +|+.++++.+.+|+.++++.+..  ....+++.+||+ +..-.    +++.++..||++++
T Consensus         1 m~I~v----NG~~~~~~~~~~tv~~lL~~l~~--~~~~vav~vN~~-iv~r~~w~~~~L~~gD~iEIv~~   63 (67)
T PRK07696          1 MNLKI----NGNQIEVPESVKTVAELLTHLEL--DNKIVVVERNKD-ILQKDDHTDTSVFDGDQIEIVTF   63 (67)
T ss_pred             CEEEE----CCEEEEcCCCcccHHHHHHHcCC--CCCeEEEEECCE-EeCHHHcCceecCCCCEEEEEEE
Confidence            56788    88899987743689999987654  356889999999 77655    77999999999986

>PLN02837 threonine-tRNA ligase

Probab=97.09  E-value=0.00055  Score=61.26  Aligned_cols=36  Identities=14%  Similarity=0.219  Sum_probs=33.9

Q ss_pred             CCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCC
Q psy2360          96 DCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD  134 (136)
Q Consensus        96 d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~  134 (136)
                      ...+++++.++++|+   .++|||++|||++|++++||+
T Consensus        29 ~~~~~~~~~~~~~~~---~~~~HSa~HLL~~Av~~l~~~   64 (614)
T PLN02837         29 PERVVLPTNESSEKL---LKIRHTCAHVMAMAVQKLFPD   64 (614)
T ss_pred             CceEEEEeccChhhH---HHHHHHHHHHHHHHHHHHcCC
Confidence            368999999999999   999999999999999999985

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=97.09  E-value=0.0019  Score=59.29  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=55.5

Q ss_pred             CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCC
Q psy2360          47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDS  107 (136)
Q Consensus        47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~  107 (136)
                      |+|..+.++.| +|+.|+|..+.+......++|+|||+ .+.++++++.+..||++|-+..
T Consensus       411 PkG~~~~Lp~g-aT~lDfAy~iHt~iG~~~~gAkvng~-~v~l~~~L~~GD~VeIits~~~  469 (743)
T PRK10872        411 PKGDVVDLPAG-STPLDFAYHIHSDVGHRCIGAKIGGR-IVPFTYQLQMGDQIEIITQKQP  469 (743)
T ss_pred             CCCCeEEcCCC-CcHHHHHHHHhHHHHhhceEEEECCE-ECCCCcCCCCCCEEEEEeCCCC
Confidence            89999999994 99999999999999999999999999 9999999999999999997764

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=97.05  E-value=0.0035  Score=40.30  Aligned_cols=58  Identities=7%  Similarity=0.165  Sum_probs=46.6

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      |+|++    +|+.++++. ++|+.++++.+...  .+.+++.+|++ +..    -.+++.++..|+++.+
T Consensus         1 m~i~v----Ng~~~~~~~-~~tl~~ll~~l~~~--~~~vaVavN~~-iv~r~~w~~~~L~~gD~Ieii~~   62 (66)
T PRK08053          1 MQILF----NDQPMQCAA-GQTVHELLEQLNQL--QPGAALAINQQ-IIPREQWAQHIVQDGDQILLFQV   62 (66)
T ss_pred             CEEEE----CCeEEEcCC-CCCHHHHHHHcCCC--CCcEEEEECCE-EeChHHcCccccCCCCEEEEEEE
Confidence            56788    899999988 59999999886553  46689999999 754    3447899999999975

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=97.00  E-value=0.0038  Score=39.56  Aligned_cols=57  Identities=12%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEecc
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF  104 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~  104 (136)
                      |+|++    +|+.++++. ++|+.++++.+...   .-++..+||. +++-    .++++++.+|+++.+
T Consensus         1 m~i~v----Ng~~~~~~~-~~tl~~ll~~l~~~---~~~~v~vN~~-~v~~~~~~~~~L~~gD~vei~~~   61 (65)
T PRK06944          1 MDIQL----NQQTLSLPD-GATVADALAAYGAR---PPFAVAVNGD-FVARTQHAARALAAGDRLDLVQP   61 (65)
T ss_pred             CEEEE----CCEEEECCC-CCcHHHHHHhhCCC---CCeEEEECCE-EcCchhcccccCCCCCEEEEEee
Confidence            46788    899999988 59999999887542   4468899999 8764    678999999999875

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=96.95  E-value=0.0041  Score=56.48  Aligned_cols=59  Identities=17%  Similarity=0.224  Sum_probs=55.6

Q ss_pred             CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCC
Q psy2360          47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDS  107 (136)
Q Consensus        47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~  107 (136)
                      |+|..+.++. ++|+.|+|..+.+......+.|+|||+ .+.|+++++++..||+++-+..
T Consensus       367 PkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~-~v~l~~~l~~gd~vei~t~~~~  425 (683)
T TIGR00691       367 PKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGK-IVPLDKELENGDVVEIITGKNS  425 (683)
T ss_pred             CCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCE-ECCCCccCCCCCEEEEEeCCCC
Confidence            8999999999 499999999999999999999999999 9999999999999999997764

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=96.93  E-value=0.0046  Score=40.58  Aligned_cols=59  Identities=8%  Similarity=0.174  Sum_probs=49.6

Q ss_pred             ceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          38 KINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        38 ~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      +|++.+    +|+..+.+.+ +|+.|+++++.-.  ...+++.+||. +..    .+..++++..||++.+
T Consensus         2 ~m~i~~----ng~~~e~~~~-~tv~dLL~~l~~~--~~~vav~vNg~-iVpr~~~~~~~l~~gD~ievv~~   64 (68)
T COG2104           2 PMTIQL----NGKEVEIAEG-TTVADLLAQLGLN--PEGVAVAVNGE-IVPRSQWADTILKEGDRIEVVRV   64 (68)
T ss_pred             cEEEEE----CCEEEEcCCC-CcHHHHHHHhCCC--CceEEEEECCE-EccchhhhhccccCCCEEEEEEe
Confidence            467777    7999999884 9999999987553  57899999999 888    8889999899999875

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=96.90  E-value=0.0046  Score=39.46  Aligned_cols=57  Identities=11%  Similarity=0.059  Sum_probs=46.4

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEecc
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF  104 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~  104 (136)
                      |+|++    +|+.++. . .+|+.++.+.+...  ...+++.+|++ +..-    ++++.++.+|+++.+
T Consensus         1 m~i~~----Ng~~~~~-~-~~tl~~Ll~~l~~~--~~~vavavN~~-iv~~~~~~~~~L~dgD~Ieiv~~   61 (65)
T PRK06488          1 MKLFV----NGETLQT-E-ATTLALLLAELDYE--GNWLATAVNGE-LVHKEARAQFVLHEGDRIEILSP   61 (65)
T ss_pred             CEEEE----CCeEEEc-C-cCcHHHHHHHcCCC--CCeEEEEECCE-EcCHHHcCccccCCCCEEEEEEe
Confidence            56788    7888888 4 37999999887543  46788999999 8876    779999999999975

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=96.71  E-value=0.0096  Score=40.53  Aligned_cols=62  Identities=15%  Similarity=0.153  Sum_probs=48.9

Q ss_pred             CcCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          35 RIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        35 ~~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      +|..|+|++    +|+.++++. ++|+.++++.+.  +....+++.+||. +..    -.+.+.++..||++++
T Consensus        15 ~~~~m~I~V----NG~~~~~~~-~~tl~~LL~~l~--~~~~~vAVevNg~-iVpr~~w~~t~L~egD~IEIv~~   80 (84)
T PRK06083         15 AMVLITISI----NDQSIQVDI-SSSLAQIIAQLS--LPELGCVFAINNQ-VVPRSEWQSTVLSSGDAISLFQA   80 (84)
T ss_pred             CCceEEEEE----CCeEEEcCC-CCcHHHHHHHcC--CCCceEEEEECCE-EeCHHHcCcccCCCCCEEEEEEE
Confidence            445788888    899999988 599999998864  4467788899998 654    3445788899999876

>PRK06437 hypothetical protein; Provisional

Probab=96.58  E-value=0.011  Score=38.30  Aligned_cols=51  Identities=6%  Similarity=0.124  Sum_probs=41.8

Q ss_pred             cEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          50 AELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        50 ~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      +.++++. ++|+.++++.+...  ..-+++.+||. +.+..++++++.+|+++.+
T Consensus        13 ~~~~i~~-~~tv~dLL~~Lgi~--~~~vaV~vNg~-iv~~~~~L~dgD~Veiv~~   63 (67)
T PRK06437         13 KTIEIDH-ELTVNDIIKDLGLD--EEEYVVIVNGS-PVLEDHNVKKEDDVLILEV   63 (67)
T ss_pred             eEEEcCC-CCcHHHHHHHcCCC--CccEEEEECCE-ECCCceEcCCCCEEEEEec
Confidence            5677777 59999999987553  34557779999 9999999999999999976

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=96.19  E-value=0.016  Score=37.12  Aligned_cols=58  Identities=10%  Similarity=0.153  Sum_probs=45.2

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeee---eecccccCCCCceEEecc
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKL---WDMHRPLESDCELQLLHF  104 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l---~DL~~~l~~d~~Ie~i~~  104 (136)
                      |+|++    +|+.+.+++ ++|+.++++.+.-  ...-++..+||. +   .+..+.+.++..||++.+
T Consensus         1 m~i~v----NG~~~~~~~-~~tl~~ll~~l~~--~~~~vav~~N~~-iv~r~~~~~~L~~gD~ieIv~~   61 (65)
T PRK05863          1 MIVVV----NEEQVEVDE-QTTVAALLDSLGF--PEKGIAVAVDWS-VLPRSDWATKLRDGARLEVVTA   61 (65)
T ss_pred             CEEEE----CCEEEEcCC-CCcHHHHHHHcCC--CCCcEEEEECCc-CcChhHhhhhcCCCCEEEEEee
Confidence            56788    899999988 5999999988654  456788888986 3   234456999999999875

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=96.12  E-value=0.022  Score=36.19  Aligned_cols=53  Identities=11%  Similarity=0.112  Sum_probs=42.8

Q ss_pred             CCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          48 EDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        48 dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      +|+.++++. ++|+.++++.+...  ...++..+||+ +..    -.+++.++.+|+++.+
T Consensus         4 Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vN~~-iv~~~~~~~~~L~~gD~veii~~   60 (64)
T TIGR01683         4 NGEPVEVED-GLTLAALLESLGLD--PRRVAVAVNGE-IVPRSEWDDTILKEGDRIEIVTF   60 (64)
T ss_pred             CCeEEEcCC-CCcHHHHHHHcCCC--CCeEEEEECCE-EcCHHHcCceecCCCCEEEEEEe
Confidence            788999988 59999999987644  46788899999 753    3357899999999875

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=95.27  E-value=0.056  Score=45.35  Aligned_cols=58  Identities=14%  Similarity=0.075  Sum_probs=48.1

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      |+|++    +|+.++++. ++|+.++++.+...  ...++..+||+ +.+    -+++++++..||++.+
T Consensus         1 M~I~V----NGk~~el~e-~~TL~dLL~~L~i~--~~~VAVeVNge-IVpr~~w~~t~LkeGD~IEII~~   62 (326)
T PRK11840          1 MRIRL----NGEPRQVPA-GLTIAALLAELGLA--PKKVAVERNLE-IVPRSEYGQVALEEGDELEIVHF   62 (326)
T ss_pred             CEEEE----CCEEEecCC-CCcHHHHHHHcCCC--CCeEEEEECCE-ECCHHHcCccccCCCCEEEEEEE
Confidence            46788    899999988 49999999987553  45677779999 887    6679999999999987

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=94.99  E-value=0.087  Score=34.15  Aligned_cols=52  Identities=15%  Similarity=0.131  Sum_probs=41.6

Q ss_pred             EEEeecCCCCHHHHHHhhchhh------hccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEML------CDRSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~------~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      .++++. ++|+.++.+.+...+      ....+++.+||+ .++.+++++++.+|.++..
T Consensus        19 ~~~~~~-~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~-~v~~~~~l~~gD~v~i~pp   76 (80)
T cd00754          19 ELELPE-GATVGELLDALEARYPGLLEELLARVRIAVNGE-YVRLDTPLKDGDEVAIIPP   76 (80)
T ss_pred             EEECCC-CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCe-EcCCCcccCCCCEEEEeCC
Confidence            345555 489999999886543      246889999999 9999999999999999864

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=94.62  E-value=0.14  Score=32.86  Aligned_cols=52  Identities=19%  Similarity=0.211  Sum_probs=42.9

Q ss_pred             EEEeecCCCCHHHHHHhhchhhhc----cceEEEEcCeeeeec---ccccCCCCceEEecc
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEMLCD----RSVLALIDGVKLWDM---HRPLESDCELQLLHF  104 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~~~----~iv~a~vng~~l~DL---~~~l~~d~~Ie~i~~  104 (136)
                      ....+. ++|+.++.+.+...++.    ..++..+||+ +.+.   ++++.++++|.++..
T Consensus        15 ~~~~~~-~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~-~v~~~~~~~~l~~gD~V~i~pp   73 (77)
T PF02597_consen   15 EIEVPE-GSTVRDLLEALAERYPELALRDRVAVAVNGE-IVPDDGLDTPLKDGDEVAILPP   73 (77)
T ss_dssp             EEEESS-TSBHHHHHHHHCHHTGGGHTTTTEEEEETTE-EEGGGTTTSBEETTEEEEEEES
T ss_pred             EEecCC-CCcHHHHHHHHHhhccccccCccEEEEECCE-EcCCccCCcCcCCCCEEEEECC
Confidence            344555 59999999999887642    7899999999 8888   999999999999864

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=94.55  E-value=0.12  Score=34.06  Aligned_cols=55  Identities=15%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             CCcEEEeecCCCCHHHHHHhhchhh---hc--cceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          48 EDAELIMNKNLSTPYNCAQHMSEML---CD--RSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        48 dg~~~~~~~~~tt~~dia~~i~~~~---~~--~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      +...++++. ++|+.++.+.+...+   ..  ..++..+||+ +.+.+++++++.+|.++..
T Consensus        19 ~~~~~~~~~-~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~-~v~~~~~l~dgDeVai~Pp   78 (82)
T PLN02799         19 SDMTLELPA-GSTTADCLAELVAKFPSLEEVRSCCVLALNEE-YTTESAALKDGDELAIIPP   78 (82)
T ss_pred             CeEEEECCC-CCcHHHHHHHHHHHChhHHHHhhCcEEEECCE-EcCCCcCcCCCCEEEEeCC
Confidence            445566666 589999988875433   22  4567889999 8899999999999999864

>PRK01777 hypothetical protein; Validated

Probab=94.36  E-value=0.25  Score=34.31  Aligned_cols=73  Identities=16%  Similarity=0.074  Sum_probs=48.3

Q ss_pred             cCceEEEeee-CCCCc---EEEeecCCCCHHHHHHhhchhhhc-cc----eEEEEcCeeeeecccccCCCCceEEeccCC
Q psy2360          36 IEKINVTYKG-LPEDA---ELIMNKNLSTPYNCAQHMSEMLCD-RS----VLALIDGVKLWDMHRPLESDCELQLLHFYD  106 (136)
Q Consensus        36 ~~~i~i~~~~-~~dg~---~~~~~~~~tt~~dia~~i~~~~~~-~i----v~a~vng~~l~DL~~~l~~d~~Ie~i~~~s  106 (136)
                      |+.|+|++.. .++..   .++++. ++|..|+++........ .+    ...-|||+ ..+++++|+++..||++--=.
T Consensus         1 ~~~i~v~V~ya~~~~~~~~~l~vp~-GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk-~v~~d~~L~dGDRVeIyrPL~   78 (95)
T PRK01777          1 MGKIRVEVVYALPERQYLQRLTLQE-GATVEEAIRASGLLELRTDIDLAKNKVGIYSR-PAKLTDVLRDGDRVEIYRPLL   78 (95)
T ss_pred             CCeeEEEEEEECCCceEEEEEEcCC-CCcHHHHHHHcCCCccCcccccccceEEEeCe-ECCCCCcCCCCCEEEEecCCC
Confidence            4556666532 23322   466777 59999999886432211 12    35668999 999999999999999976544


Q ss_pred             CCCc
Q psy2360         107 SDPY  110 (136)
Q Consensus       107 ~~g~  110 (136)
                      -|-.
T Consensus        79 ~DPk   82 (95)
T PRK01777         79 ADPK   82 (95)
T ss_pred             CCHH
Confidence            4443

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=93.55  E-value=0.4  Score=30.48  Aligned_cols=55  Identities=11%  Similarity=0.195  Sum_probs=43.7

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      |+|.+    +|+.+.... .+|+.++.+.+.+.    .-...+||. ...=+.+|+++.+|-||.
T Consensus         1 M~I~v----N~k~~~~~~-~~tl~~lr~~~k~~----~DI~I~NGF-~~~~d~~L~e~D~v~~Ik   55 (57)
T PF14453_consen    1 MKIKV----NEKEIETEE-NTTLFELRKESKPD----ADIVILNGF-PTKEDIELKEGDEVFLIK   55 (57)
T ss_pred             CEEEE----CCEEEEcCC-CcCHHHHHHhhCCC----CCEEEEcCc-ccCCccccCCCCEEEEEe
Confidence            46788    889999988 49999998887764    335589999 887888888888887764

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2

Probab=92.85  E-value=0.38  Score=31.99  Aligned_cols=51  Identities=18%  Similarity=0.214  Sum_probs=42.0

Q ss_pred             EEEeecCCCCHHHHHHhhchhhhccceEEEE-------cCeeeeecccccCCCCceEEec
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEMLCDRSVLALI-------DGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~~~~iv~a~v-------ng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      .+.++. ++|..|++..+..+..+....|.+       +|+ ...++++|+++.-|++++
T Consensus        18 ~liL~~-GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq-~Vgl~~~L~d~DvVeI~~   75 (75)
T cd01666          18 PVILRR-GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQ-RVGLDHVLEDEDVVQIVK   75 (75)
T ss_pred             CEEECC-CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCe-ECCCCCEecCCCEEEEeC
Confidence            577778 599999999988777677666664       888 899999999999888864

DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea

Probab=91.99  E-value=0.51  Score=31.38  Aligned_cols=50  Identities=16%  Similarity=0.086  Sum_probs=40.1

Q ss_pred             EEEeecCCCCHHHHHHhhchhhhccce---EEEEcCeeeeecccccCCCCceEEec
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEMLCDRSV---LALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~~~~iv---~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      ...+++ ++|..|+|..+..+..+...   .++ ||+ ...++++++++..|++++
T Consensus        24 ~~~l~~-GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~-~vg~~~~L~dgDvV~Ii~   76 (76)
T cd01669          24 AFLLPK-GSTARDLAYAIHTDIGDGFLHAIDAR-TGR-RVGEDYELKHRDVIKIVS   76 (76)
T ss_pred             eEEECC-CCCHHHHHHHHHHHHHhcceeeEEee-CCE-EeCCCcEecCCCEEEEeC
Confidence            356667 59999999998877766633   345 999 999999999999998875

Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=91.79  E-value=0.72  Score=30.22  Aligned_cols=52  Identities=12%  Similarity=0.081  Sum_probs=38.8

Q ss_pred             EEEeecCCCCHHHHHHhhchhhh-----ccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEMLC-----DRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~~-----~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      +++++.+++|..++...+...++     ...+...+|++ ..+.+.+++++.+|.++-
T Consensus        19 ~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~-~v~~~~~l~dgDevai~P   75 (80)
T TIGR01682        19 TLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEE-YVTDDALLNEGDEVAFIP   75 (80)
T ss_pred             EEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCE-EcCCCcCcCCCCEEEEeC
Confidence            34444434888888888765543     14567889999 888999999999998875

The C-terminal Gly-Gly of this model is critical to function.

>PRK01584 alanyl-tRNA synthetase; Provisional

Probab=86.18  E-value=0.65  Score=41.96  Aligned_cols=21  Identities=19%  Similarity=0.197  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHHHHHHHHhcCC
Q psy2360         114 RTFWRSCSIMLGSVLSNAFKD  134 (136)
Q Consensus       114 ~vyrhS~ahlLa~Av~~lfp~  134 (136)
                      .+-+||++|||.+|++++||+
T Consensus       453 ~~r~HTAtHLL~~ALr~vlG~  473 (594)
T PRK01584        453 TTKLHTATHLLHKALRLVLGD  473 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHcCc
Confidence            789999999999999999985

>PRK11130 moaD molybdopterin synthase small subunit; Provisional

Probab=85.44  E-value=4.6  Score=26.54  Aligned_cols=45  Identities=22%  Similarity=0.297  Sum_probs=33.8

Q ss_pred             CCCHHHHHHhhchhhh-------ccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          58 LSTPYNCAQHMSEMLC-------DRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        58 ~tt~~dia~~i~~~~~-------~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      ++|..++.+.+...++       ...+..-||++ +.++++++.++.+|-|+-
T Consensus        25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~-~~~~~~~l~dgDeVai~P   76 (81)
T PRK11130         25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQT-LVSFDHPLTDGDEVAFFP   76 (81)
T ss_pred             CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCE-EcCCCCCCCCCCEEEEeC
Confidence            4788888777654432       23356788999 989999999999998874

>TIGR01687 moaD_arch MoaD family protein, archaeal

Probab=84.14  E-value=5.5  Score=26.24  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=33.9

Q ss_pred             CCCHHHHHHhhchhhhc-------------cceEEEEcCeeeeeccc--ccCCCCceEEec
Q psy2360          58 LSTPYNCAQHMSEMLCD-------------RSVLALIDGVKLWDMHR--PLESDCELQLLH  103 (136)
Q Consensus        58 ~tt~~dia~~i~~~~~~-------------~iv~a~vng~~l~DL~~--~l~~d~~Ie~i~  103 (136)
                      ++|..++++.+...++.             +.+...+||+ ..+-..  +++++.+|.|+.
T Consensus        24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~-~v~~~~~~~l~dgdev~i~P   83 (88)
T TIGR01687        24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGR-NVDWGLGTELKDGDVVAIFP   83 (88)
T ss_pred             CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCE-ecCccCCCCCCCCCEEEEeC
Confidence            48999999988655432             2377889999 766555  999999988875

Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
1wwt_A	88	Solution Structure Of The Tgs Domain From Human Thr		9e-08

>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl- Trna Synthetase Length = 88

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 46  LPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY 105
           LP+  ++      +TPY  A  +S+ L D +V+A ++ V +WD+ RPLE DC L+LL F 
Sbjct: 16  LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCTLELLKFE 74
Query: 106 DSD 108
           D +
Sbjct: 75  DEE 77

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
1wwt_A	88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	8e-13
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	4e-05
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	8e-05

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Length = 88

 Score = 59.1 bits (144), Expect = 8e-13
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 7/85 (8%)

Query: 37  EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 96
           + I VT   LP+  ++      +TPY  A  +S+ L D +V+A ++   +WD+ RPLE D
Sbjct: 10  KPIKVT---LPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNN-VVWDLDRPLEED 65

Query: 97  CELQLLHFYDSDPYHSNRTFWRSCS 121
           C L+LL F D +   +   +    S
Sbjct: 66  CTLELLKFEDEE---AQAVYSGPSS 87

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Length = 645

 Score = 41.0 bits (97), Expect = 4e-05
 Identities = 19/100 (19%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 37  EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESD 96
           E+IN+     P+  +   +K  +T  + AQ +S  L  ++V    +G +L D+ +PLE+D
Sbjct: 2   EQINIQ---FPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNG-QLVDLTKPLETD 56

Query: 97  CELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKDTH 136
             ++++     +   +      S + ++   +   + +  
Sbjct: 57  GSIEIVTPGSEE---ALEVLRHSTAHLMAHAIKRLYGNVK 93

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Length = 642

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 4/78 (5%)

Query: 59  STPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR 118
            +P + A  +   L    +   ++G +L D    +E+D +L ++   D +          
Sbjct: 18  VSPMDVALDIGPGLAKACIAGRVNG-ELVDACDLIENDAQLSIITAKDEE---GLEIIRH 73

Query: 119 SCSIMLGSVLSNAFKDTH 136
           SC+ +LG  +   +  T 
Sbjct: 74  SCAHLLGHAIKQLWPHTK 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
1tke_A	224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	99.84
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.8
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.79
1wwt_A	88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	99.75
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	99.35
3hvz_A	78	Uncharacterized protein; alpha-beta protein, struc	99.16
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	97.26
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	97.11
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	97.08
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	96.84
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	96.83
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	96.81
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	96.52
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	95.68
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	95.67
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	94.83
3kew_A	241	DHHA1 domain protein; structural genomics, PSI-2,	94.63
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	94.61
2e1b_A	216	PH0108, 216AA long hypothetical alanyl-tRNA synthe	94.52
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	93.04
2eki_A	93	DRG 1, developmentally-regulated GTP-binding prote	92.48
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	91.97
2hj1_A	97	Hypothetical protein; structural genomics, PSI, pr	90.68
2ztg_A	739	Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy	89.06
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	88.66
2zze_A	752	Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML	87.66
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	86.94
2l52_A	99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	83.86

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*

Probab=99.84  E-value=3.2e-21  Score=149.83  Aligned_cols=88  Identities=18%  Similarity=0.358  Sum_probs=84.1

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHH
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR  118 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrh  118 (136)
                      ++|++   |||+.++++. ++|+.|+|+.++..+.+.+++|+|||+ ++||++|++.|+.|++|++++++|+   ++|||
T Consensus         2 i~I~~---p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~-l~dL~~~l~~~~~ve~it~~~~~g~---~~~~H   73 (224)
T 1tke_A            2 PVITL---PDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGE-LVDACDLIENDAQLSIITAKDEEGL---EIIRH   73 (224)
T ss_dssp             CEEEC---TTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTE-EEETTCCBCSCEEEEEECTTSHHHH---HHHHH
T ss_pred             eEEEe---CCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCE-EeccceEcCCCCeEEEEecCchhHH---HHHHH
Confidence            56777   8999999999 599999999999999999999999999 9999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHhcCC
Q psy2360         119 SCSIMLGSVLSNAFKD  134 (136)
Q Consensus       119 S~ahlLa~Av~~lfp~  134 (136)
                      |++|||++|++++||+
T Consensus        74 S~~HlL~~A~~~~~~~   89 (224)
T 1tke_A           74 SCAHLLGHAIKQLWPH   89 (224)
T ss_dssp             HHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            9999999999999986

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.80  E-value=2.7e-20  Score=163.74  Aligned_cols=88  Identities=18%  Similarity=0.358  Sum_probs=84.6

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHHHH
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWR  118 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrh  118 (136)
                      |+|++   |||+.++++. ++|+.+||+.|++.+++.+++|+|||+ +|||++|++.||+|++|+++|++|+   .++||
T Consensus         2 ~~~~~---~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~-~~dl~~~l~~d~~~~~~~~~~~~~~---~~~~H   73 (642)
T 1qf6_A            2 PVITL---PDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGE-LVDACDLIENDAQLSIITAKDEEGL---EIIRH   73 (642)
T ss_dssp             CEEEC---TTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTE-EEETTSCBCSCEECCEECTTSHHHH---HHHHH
T ss_pred             ceEEc---CCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCE-EeccccccCCCceEEEeecCcHHHH---HHHHH
Confidence            67888   9999999988 599999999999999999999999999 9999999999999999999999999   99999


Q ss_pred             HHHHHHHHHHHHhcCC
Q psy2360         119 SCSIMLGSVLSNAFKD  134 (136)
Q Consensus       119 S~ahlLa~Av~~lfp~  134 (136)
                      |++|||++|++++||+
T Consensus        74 Sa~HlL~~Al~~~~~~   89 (642)
T 1qf6_A           74 SCAHLLGHAIKQLWPH   89 (642)
T ss_dssp             HHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999987

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.79  E-value=3.8e-20  Score=162.39  Aligned_cols=91  Identities=21%  Similarity=0.402  Sum_probs=84.6

Q ss_pred             cCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhH
Q psy2360          36 IEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRT  115 (136)
Q Consensus        36 ~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~v  115 (136)
                      |++++|++   |||+.++++. ++|+.+||+.+++.+++.+++|+|||+ ++||++|++.||+|+||+++|++|+   ++
T Consensus         1 ~~~~~i~~---~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~-~~dl~~~l~~d~~v~~~~~~~~~g~---~~   72 (645)
T 1nyr_A            1 MEQINIQF---PDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQ-LVDLTKPLETDGSIEIVTPGSEEAL---EV   72 (645)
T ss_dssp             ---CBBCC---TTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTE-EECTTSCCCSCBCCCEECTTSHHHH---HH
T ss_pred             CCceEEEe---CCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCE-EEeCCcccCCCCeEEEeeccchhHH---HH
Confidence            34677888   9999999988 599999999999999999999999999 9999999999999999999999999   99


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q psy2360         116 FWRSCSIMLGSVLSNAFKD  134 (136)
Q Consensus       116 yrhS~ahlLa~Av~~lfp~  134 (136)
                      ||||++|||++|++++||+
T Consensus        73 ~~HSa~HlL~~A~~~~~~~   91 (645)
T 1nyr_A           73 LRHSTAHLMAHAIKRLYGN   91 (645)
T ss_dssp             HHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999986

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}

Probab=99.75  E-value=2.5e-19  Score=120.81  Aligned_cols=78  Identities=36%  Similarity=0.644  Sum_probs=72.2

Q ss_pred             CceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCCCcchhhHH
Q psy2360          37 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTF  116 (136)
Q Consensus        37 ~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vy  116 (136)
                      .+++|++   |||+.++++.+++|+.|+|+.++..+.+.+++|+|||+ ++||+++++.||.||||++++++|+   ++|
T Consensus        10 ~~i~I~l---pdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~-l~dL~~~l~~d~~ve~vt~~~~eg~---~i~   82 (88)
T 1wwt_A           10 KPIKVTL---PDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNV-VWDLDRPLEEDCTLELLKFEDEEAQ---AVY   82 (88)
T ss_dssp             CEEEEEC---TTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSS-EECSSSCCCSSEEEEECSSCCSCCS---CSC
T ss_pred             CCEEEEE---CCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCE-EECCCcCcCCCCEEEEEeCCCHHHh---hhe
Confidence            4577888   89999999884599999999999999999999999999 9999999999999999999999999   999


Q ss_pred             HHHHH
Q psy2360         117 WRSCS  121 (136)
Q Consensus       117 rhS~a  121 (136)
                      |||++
T Consensus        83 rHS~~   87 (88)
T 1wwt_A           83 SGPSS   87 (88)
T ss_dssp             CCCSC
T ss_pred             eccCC
Confidence            99974

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=99.35  E-value=3.7e-12  Score=82.09  Aligned_cols=65  Identities=17%  Similarity=0.134  Sum_probs=59.3

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCC
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSD  108 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~  108 (136)
                      |.|++   |+|+.++++. ++|+.++++.++..++++++++++||+ ++||++++++++.|||+++.+..
T Consensus         3 i~i~~---p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~-lvdl~~~L~~~~~Veivt~~~~~   67 (73)
T 2kmm_A            3 VMVFT---PKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHK-LVPLSYVLNSGDQVEVLSSKSLE   67 (73)
T ss_dssp             EEEEC---TTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTE-ECCTTCBCCSSSBEEEEECCCCC
T ss_pred             EEEEc---CCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCE-EeCCCcCcCCCCEEEEEECCCCc
Confidence            56666   8999999998 599999999998888889999999999 99999999999999999998765

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}

Probab=99.16  E-value=1.1e-10  Score=77.57  Aligned_cols=67  Identities=16%  Similarity=0.183  Sum_probs=59.2

Q ss_pred             CceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccCCCC
Q psy2360          37 EKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFYDSD  108 (136)
Q Consensus        37 ~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~  108 (136)
                      +.|.|..   |+|..+++++ ++|+.|+|..+.+.+.+.+++|+|||+ ++||+++|++++.||+++.+.-+
T Consensus         6 ~~i~v~t---P~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~-~v~L~~~L~~gd~VeIit~~~~~   72 (78)
T 3hvz_A            6 EEVFVFT---PKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGR-IVPIDYKVKTGEIIDVLTTKELE   72 (78)
T ss_dssp             CEEEEEC---TTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTE-EECTTCBCCTTCBEEEEECC---
T ss_pred             ceEEEEC---CCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCE-EcCCCcccCCCCEEEEEccCccc
Confidence            3466776   9999999999 599999999999999999999999999 99999999999999999976543

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=97.26  E-value=0.00062  Score=45.65  Aligned_cols=63  Identities=10%  Similarity=0.057  Sum_probs=47.3

Q ss_pred             CcCceEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEecc
Q psy2360          35 RIEKINVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF  104 (136)
Q Consensus        35 ~~~~i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~  104 (136)
                      .+..|+|++    +|+.++++.+.+|+.++++.+..  ....+++.+||+ +.+-    .++|.++.+|+++.+
T Consensus        17 ~~~~M~I~v----NGe~~el~~~~~Tv~dLL~~L~~--~~~~vaVavNg~-iV~~~~~~~~~L~dGD~Vei~~~   83 (87)
T 1tyg_B           17 IGGRHMLQL----NGKDVKWKKDTGTIQDLLASYQL--ENKIVIVERNKE-IIGKERYHEVELCDRDVIEIVHF   83 (87)
T ss_dssp             -----CEEE----TTEEECCSSSCCBHHHHHHHTTC--TTSCCEEEETTE-EECGGGTTTSBCCSSSEEEEEEE
T ss_pred             CCcceEEEE----CCEEEECCCCCCcHHHHHHHhCC--CCCCEEEEECCE-ECChhhcCCcCCCCCCEEEEEcc
Confidence            345688899    88899987732899999998754  345677999999 8765    578999999999875

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=97.11  E-value=0.0011  Score=41.59  Aligned_cols=58  Identities=7%  Similarity=0.129  Sum_probs=47.3

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeec----ccccCCCCceEEecc
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDM----HRPLESDCELQLLHF  104 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL----~~~l~~d~~Ie~i~~  104 (136)
                      |+|++    +|+.++++. ++|+.++.+.+..  ....+++.+||+ +.+-    .+++.++.+|+++.+
T Consensus         1 m~i~v----Ng~~~~~~~-~~tv~~ll~~l~~--~~~~v~vavN~~-~v~~~~~~~~~L~~gD~v~i~~~   62 (66)
T 1f0z_A            1 MQILF----NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQ-IVPREQWAQHIVQDGDQILLFQV   62 (66)
T ss_dssp             CCEEE----SSCEECCCT-TCCHHHHHHHHTC--CCSSEEEEETTE-EECHHHHTTCCCCTTEEECEEES
T ss_pred             CEEEE----CCEEEEcCC-CCcHHHHHHHcCC--CCCCEEEEECCE-ECCchhcCCcCCCCCCEEEEEee
Confidence            46788    888899888 5999999998754  345678999999 8765    789999999999875

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=97.08  E-value=0.0016  Score=41.44  Aligned_cols=59  Identities=7%  Similarity=-0.010  Sum_probs=47.8

Q ss_pred             ceEEEeeeCCCCcE----EEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          38 KINVTYKGLPEDAE----LIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        38 ~i~i~~~~~~dg~~----~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      .|+|++    +|+.    ++++. ++|+.++.+.+...  ...+++.+||+ +.+..+++.++.+|+++.+
T Consensus         4 ~m~i~v----Ng~~~~~~~~~~~-~~tv~~Ll~~l~~~--~~~v~vavN~~-~v~~~~~L~~gD~V~ii~~   66 (70)
T 1ryj_A            4 GMKFTV----ITDDGKKILESGA-PRRIKDVLGELEIP--IETVVVKKNGQ-IVIDEEEIFDGDIIEVIRV   66 (70)
T ss_dssp             CEEEEE----EETTEEEEEEESS-CCBHHHHHHHTTCC--TTTEEEEETTE-ECCTTSBCCTTCEEEEEEC
T ss_pred             eEEEEE----eCccCceeEECCC-CCcHHHHHHHhCCC--CCCEEEEECCE-ECCCcccCCCCCEEEEEec
Confidence            477888    4555    88877 49999999987543  45567999999 9999999999999999875

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=96.84  E-value=0.002  Score=42.14  Aligned_cols=60  Identities=10%  Similarity=0.141  Sum_probs=47.4

Q ss_pred             eEEEeeeCCCCcEEEee--cCCCCHHHHHHhhchhhhccceEEEEcCeeeeecc----cccCCCCceEEeccC
Q psy2360          39 INVTYKGLPEDAELIMN--KNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHFY  105 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~--~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~----~~l~~d~~Ie~i~~~  105 (136)
                      |+|++    +|+.++++  . ++|+.++++.+.... ..-+++.+||. +..-.    ++|.++..||++.+=
T Consensus         1 M~I~v----NGe~~e~~~~~-~~Tl~~LL~~l~~~~-~~~vAVavNg~-iVpr~~~~~~~L~dGD~IEIv~~V   66 (78)
T 2k5p_A            1 MNLTV----NGKPSTVDGAE-SLNVTELLSALKVAQ-AEYVTVELNGE-VLEREAFDATTVKDGDAVEFLYFM   66 (78)
T ss_dssp             CEEEE----TTEEEECSSCS-CEEHHHHHHHHTCSC-TTTCCEEETTE-ECCTTHHHHCEECSSBCEEECCCC
T ss_pred             CEEEE----CCEEEEcCCCC-CCcHHHHHHHcCCCC-CCcEEEEECCE-ECChHHcCcccCCCCCEEEEEeee
Confidence            46888    78899987  7 599999999875321 34567999999 87654    789999999999863

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=96.81  E-value=0.0046  Score=38.43  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=45.1

Q ss_pred             EEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecc----cccCCCCceEEecc
Q psy2360          41 VTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMH----RPLESDCELQLLHF  104 (136)
Q Consensus        41 i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~----~~l~~d~~Ie~i~~  104 (136)
                      |++    +|+.+++ . ++|+.++.+.+...  ...+++.+||+ +.+..    +++.++.+|+++.+
T Consensus         2 i~v----Ng~~~~~-~-~~tv~~ll~~l~~~--~~~v~vavN~~-~v~~~~~~~~~L~dgD~v~i~~~   60 (64)
T 2cu3_A            2 VWL----NGEPRPL-E-GKTLKEVLEEMGVE--LKGVAVLLNEE-AFLGLEVPDRPLRDGDVVEVVAL   60 (64)
T ss_dssp             EEE----TTEEECC-T-TCCHHHHHHHHTBC--GGGEEEEETTE-EEEGGGCCCCCCCTTCEEEEEEC
T ss_pred             EEE----CCEEEEc-C-CCcHHHHHHHcCCC--CCcEEEEECCE-ECCccccCCcCCCCCCEEEEEee
Confidence            567    7888888 6 49999999987543  45678999999 88865    89999999999875

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=96.52  E-value=0.0036  Score=40.49  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=44.7

Q ss_pred             eEEEeeeCCCCcE---EEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEeccC
Q psy2360          39 INVTYKGLPEDAE---LIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHFY  105 (136)
Q Consensus        39 i~i~~~~~~dg~~---~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~  105 (136)
                      ++|++   . |..   ++++. ++|+.|+++.+...  ..-+++.+||+ ..+.+++++ +..|+++.+=
T Consensus         3 v~Vkl---~-g~~~~~~ev~~-g~Tv~dLL~~Lgl~--~~~VvV~vNG~-~v~~d~~l~-GD~VeIv~~V   63 (74)
T 2l32_A            3 VTVEV---V-GEETSEVAVDD-DGTYADLVRAVDLS--PHEVTVLVDGR-PVPEDQSVE-VDRVKVLRLI   63 (74)
T ss_dssp             EEEEC---S-SSSEEEEECST-TCSHHHHHHTTCCC--SSCCCEECCCC-CCCTTSSSC-CCCEEECSSC
T ss_pred             EEEEE---e-CccceeEEcCC-CCcHHHHHHHcCCC--cceEEEEECCE-ECCHHHCCC-CCEEEEEEee
Confidence            55565   3 444   78888 59999999998654  33447999999 999999886 8899998874

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=95.68  E-value=0.022  Score=38.09  Aligned_cols=55  Identities=9%  Similarity=0.092  Sum_probs=42.6

Q ss_pred             CCcEEEeecCCCCHHHHHHhhchhhh-------------ccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          48 EDAELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        48 dg~~~~~~~~~tt~~dia~~i~~~~~-------------~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      +...++++. ++|+.++.+.+...++             ...+++.|||+ .+++++++.++.+|.|+..
T Consensus        27 ~~~~~e~~~-~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~-~v~~~~~L~dGDeV~i~pp   94 (98)
T 1vjk_A           27 DEEEIELPE-GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGR-YVSWDEELKDGDVVGVFPP   94 (98)
T ss_dssp             SEEEEEECT-TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTB-CCCTTCBCCTTCEEEEESC
T ss_pred             CeEEEECCC-CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCE-ECCCCCCCCCCCEEEEECC
Confidence            344566666 4899999988765432             25678999999 9999999999999999864

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=95.67  E-value=0.01  Score=38.17  Aligned_cols=54  Identities=7%  Similarity=0.018  Sum_probs=43.8

Q ss_pred             CCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          47 PEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        47 ~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      .++..++++. ++|+.++++.+...  ...+++.+||+ +.+..+++.++.+|+++..
T Consensus        20 ~n~~~~~~~~-~~Tv~dLl~~L~~~--~~~v~VavNg~-~v~~~~~L~dGD~V~i~pp   73 (77)
T 1rws_A           20 NIEKEIEWRE-GMKVRDILRAVGFN--TESAIAKVNGK-VVLEDDEVKDGDFVEVIPV   73 (77)
T ss_dssp             CCCCCCCCCS-SCCHHHHHHTTTCS--SCSSCEEETTE-EECSSSCCCSSCCCBCSCC
T ss_pred             cCCEEEECCC-CCcHHHHHHHhCCC--CcCEEEEECCE-ECCCCCCcCCCCEEEEEcc
Confidence            3677777777 48999999987532  34568899999 9999999999999999864

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=94.83  E-value=0.078  Score=34.40  Aligned_cols=51  Identities=12%  Similarity=0.040  Sum_probs=39.2

Q ss_pred             EEEeecCCCCHHHHHHhhchhhhc-------------cceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEMLCD-------------RSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~~~-------------~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      .++++. ++|..++.+.+...++.             +.+...|||+ .++.++++.++.+|.|+.
T Consensus        21 ~~~~~~-~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~-~v~~~~~l~~gDeV~i~P   84 (89)
T 3po0_A           21 RVDVDG-DATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGE-AAALGEATAAGDELALFP   84 (89)
T ss_dssp             EEECCT-TCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTE-ECCTTSBCCTTCEEEEEC
T ss_pred             EEECCC-CCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCE-ECCCCcccCCCCEEEEEC
Confidence            344545 48999998887654432             2378889999 999999999999999875

>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}

Probab=94.63  E-value=0.023  Score=44.17  Aligned_cols=50  Identities=10%  Similarity=-0.023  Sum_probs=31.5

Q ss_pred             cCeeeeecccccCCCCceEEeccCCCCCcchhhHHHHHHHHHHHHHHHHhcCC
Q psy2360          82 DGVKLWDMHRPLESDCELQLLHFYDSDPYHSNRTFWRSCSIMLGSVLSNAFKD  134 (136)
Q Consensus        82 ng~~l~DL~~~l~~d~~Ie~i~~~s~~g~~~~~vyrhS~ahlLa~Av~~lfp~  134 (136)
                      +|..++-+..++..+..++..-   +...+...+.|||++|||++|++++||.
T Consensus        65 ~g~i~H~~~~~l~~g~~V~~~v---D~~rR~~~~~~HTa~HLL~~al~~~~g~  114 (241)
T 3kew_A           65 EGKVYHVLEKEPKKLKNLQCEL---DWERRFDGMQQHLGQHLLSGCFYDLFGA  114 (241)
T ss_dssp             TTEEEEEESSCCCCCSSEEEEE---CHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEECCcCCCCCEEEEEE---CHHHhhhHHHHHHHHHHHHHHHHHHCCC
Confidence            4542333444555555555432   1122223689999999999999999985

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=94.61  E-value=0.037  Score=34.90  Aligned_cols=51  Identities=6%  Similarity=0.046  Sum_probs=38.6

Q ss_pred             EEeecCCCCHHHHHHhhchhhhc-cce--EEEEcCeeeeecccccCCCCceEEecc
Q psy2360          52 LIMNKNLSTPYNCAQHMSEMLCD-RSV--LALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        52 ~~~~~~~tt~~dia~~i~~~~~~-~iv--~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      ++++. ++|+.++.+.+...++. .-+  +..+||+ +.+.++++.++.+|+++..
T Consensus        20 ~~~~~-~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~-~v~~~~~L~~gD~V~i~pp   73 (77)
T 2q5w_D           20 IVLEQ-ALTVQQFEDLLFERYPQINNKKFQVAVNEE-FVQKSDFIQPNDTVALIPP   73 (77)
T ss_dssp             CCCSS-CEEHHHHHHHHHHHCGGGTTCCCEEEETTE-EECTTSEECTTCEEEEECS
T ss_pred             EECCC-CCCHHHHHHHHHHHCcchhcceEEEEECCE-ECCCCCCcCCCCEEEEECC
Confidence            34445 47999998887654322 224  7889999 9999999999999999864

>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2

Probab=94.52  E-value=0.023  Score=43.44  Aligned_cols=21  Identities=14%  Similarity=0.109  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHHHHHHHHhcCC
Q psy2360         114 RTFWRSCSIMLGSVLSNAFKD  134 (136)
Q Consensus       114 ~vyrhS~ahlLa~Av~~lfp~  134 (136)
                      .+.|||++|||++|++++||.
T Consensus        95 ~~~~HTA~HlL~~Al~~~~g~  115 (216)
T 2e1b_A           95 LMRIHTGLHLLEHVLNEVLGE  115 (216)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhHHHHHHHHHHHHHcCC
Confidence            689999999999999999986

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=93.04  E-value=0.37  Score=30.36  Aligned_cols=46  Identities=24%  Similarity=0.281  Sum_probs=36.3

Q ss_pred             CCCHHHHHHhhchhhh-------ccceEEEEcCeeeeecccccCCCCceEEecc
Q psy2360          58 LSTPYNCAQHMSEMLC-------DRSVLALIDGVKLWDMHRPLESDCELQLLHF  104 (136)
Q Consensus        58 ~tt~~dia~~i~~~~~-------~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~  104 (136)
                      ++|+.++.+.+...++       ..-+++.+||+ +.++++++.++.+|.++..
T Consensus        25 ~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~-~v~~~~~l~~gD~V~i~Pp   77 (81)
T 1fm0_D           25 FPTVEALRQHMAAQSDRWALALEDGKLLAAVNQT-LVSFDHPLTDGDEVAFFPP   77 (81)
T ss_dssp             CSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTE-ECCTTCBCCTTCEEEEECC
T ss_pred             CCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCE-ECCCCCCCCCCCEEEEeCC
Confidence            5899999888764321       23467999999 9999999999999999853

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}

Probab=92.48  E-value=0.72  Score=31.09  Aligned_cols=54  Identities=13%  Similarity=0.133  Sum_probs=45.1

Q ss_pred             EEe-ecCCCCHHHHHHhhchhhhccceEEEE-------cCeeeeecccccCCCCceEEeccCCC
Q psy2360          52 LIM-NKNLSTPYNCAQHMSEMLCDRSVLALI-------DGVKLWDMHRPLESDCELQLLHFYDS  107 (136)
Q Consensus        52 ~~~-~~~~tt~~dia~~i~~~~~~~iv~a~v-------ng~~l~DL~~~l~~d~~Ie~i~~~s~  107 (136)
                      +.+ ++ ++|+.|++..|-..+.+.+.-|.|       ||+ -+.+++.|++..-|++++-..+
T Consensus        29 viL~~~-GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~q-rVgldh~L~d~DVV~Iv~~~~~   90 (93)
T 2eki_A           29 VVLPYS-RTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQ-KVGKDHTLEDEDVIQIVKKSGP   90 (93)
T ss_dssp             EEEETT-SCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSE-EECSSCCCCSSEEECEEECCSC
T ss_pred             EEEecC-CCCHHHHHHHHHHHHHhhccEEEEecccccCCCE-ECCCCcEecCCCEEEEEeCCCC
Confidence            677 67 599999999999988888766665       899 9999999998888999886544

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=91.97  E-value=0.41  Score=30.66  Aligned_cols=52  Identities=15%  Similarity=0.197  Sum_probs=39.6

Q ss_pred             EEEeecCCCCHHHHHHhhchhhh-------------ccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~~-------------~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      ..+++. ++|+.++.+.+...++             ...+++.+||+ .++    +++++.++.+|.|+..
T Consensus        18 ~~~~~~-~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~-~v~~~~~~~~~l~~gD~V~i~pp   86 (90)
T 2g1e_A           18 EETFNG-ISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGN-NITSMKGLDTEIKDDDKIDLFPP   86 (90)
T ss_dssp             EEEESS-CCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSS-BGGGTCSSSCBCCTTCEEEEECC
T ss_pred             EEEcCC-CCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCE-EccccCCCCcCCCCCCEEEEeCC
Confidence            456655 4899999988765431             14568999999 775    7999999999999864

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4

Probab=90.68  E-value=0.43  Score=32.22  Aligned_cols=56  Identities=9%  Similarity=-0.044  Sum_probs=41.3

Q ss_pred             EEeecCCCCHHHHHHhhchhhhc-----cceEEEEcCeeeeecccccCCCCceEEeccCCCCC
Q psy2360          52 LIMNKNLSTPYNCAQHMSEMLCD-----RSVLALIDGVKLWDMHRPLESDCELQLLHFYDSDP  109 (136)
Q Consensus        52 ~~~~~~~tt~~dia~~i~~~~~~-----~iv~a~vng~~l~DL~~~l~~d~~Ie~i~~~s~~g  109 (136)
                      ++++. ++|..++++........     ..++.-|||+ ..+++++|.++..||++.+=.-|-
T Consensus        30 ~~v~~-g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~-~v~~d~~L~dGDRVEIyrpl~~DP   90 (97)
T 2hj1_A           30 FQVDE-GITVQTAITQSGILSQFPEIDLSTNKIGIFSR-PIKLTDVLKEGDRIEIYRPLLADP   90 (97)
T ss_dssp             EEEET-TCBHHHHHHHHTHHHHCTTCCTTTSEEEEEEC-SCCTTCBCCTTCEEEECCCCC---
T ss_pred             EEcCC-CCcHHHHHHHcCCCccCCcccccccEEEEcCE-ECCCCccCCCCCEEEEEecccCCH
Confidence            46777 59999999886543221     1467889999 999999999999999987654333

>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}

Probab=89.06  E-value=0.23  Score=44.57  Aligned_cols=21  Identities=14%  Similarity=0.083  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHHHHHhcCC
Q psy2360         114 RTFWRSCSIMLGSVLSNAFKD  134 (136)
Q Consensus       114 ~vyrhS~ahlLa~Av~~lfp~  134 (136)
                      .+++||++|||.+|++++||.
T Consensus       596 ~m~~HTAtHLL~~ALr~vlG~  616 (739)
T 2ztg_A          596 HMRHHSATHVLLYSLQKVLGN  616 (739)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHhcCC
Confidence            599999999999999999985

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=88.66  E-value=0.76  Score=28.72  Aligned_cols=52  Identities=13%  Similarity=0.135  Sum_probs=39.5

Q ss_pred             cEEEeecCCCCHHHHHHhhchhh--hc--cceEEEEcCeee-eecccccCCCCceEEecc
Q psy2360          50 AELIMNKNLSTPYNCAQHMSEML--CD--RSVLALIDGVKL-WDMHRPLESDCELQLLHF  104 (136)
Q Consensus        50 ~~~~~~~~~tt~~dia~~i~~~~--~~--~iv~a~vng~~l-~DL~~~l~~d~~Ie~i~~  104 (136)
                      .+++. . ++|+.++.+.+....  .+  ..++..+||+ + .+.++++.++++|.++..
T Consensus        14 ~~~e~-~-~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~-~v~~~~~~l~~gDeV~i~Pp   70 (74)
T 3rpf_C           14 ENFFI-K-ANDLKELRAILQEKEGLKEWLGVCAIALNDH-LIDNLNTPLKDGDVISLLPP   70 (74)
T ss_dssp             CCEEE-E-CSSHHHHHHHHHTCTTTTTTTTTCEEEESSS-EECCTTCCCCTTCEEEEECC
T ss_pred             eEEee-C-CCcHHHHHHHHHHCcCHHHHhhccEEEECCE-EcCCCCcCCCCCCEEEEECC
Confidence            34666 4 489999998876531  11  4578899999 6 789999999999998853

>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*

Probab=87.66  E-value=0.32  Score=43.74  Aligned_cols=21  Identities=10%  Similarity=0.034  Sum_probs=19.5

Q ss_pred             hHHHHHHHHHHHHHHHHhcCC
Q psy2360         114 RTFWRSCSIMLGSVLSNAFKD  134 (136)
Q Consensus       114 ~vyrhS~ahlLa~Av~~lfp~  134 (136)
                      .+.+||++|||++|++++||.
T Consensus       609 ~mr~HTAtHLL~~ALr~vlG~  629 (752)
T 2zze_A          609 HMRHHTGTHVLMGALVRVLGR  629 (752)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHhHHHHHHHHHHHHHcCC
Confidence            588999999999999999985

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=86.94  E-value=1.1  Score=29.02  Aligned_cols=50  Identities=8%  Similarity=0.006  Sum_probs=37.6

Q ss_pred             EEEeecCCCCHHHHHHhhchhhhc---------------cceEEEEcCeeeee----cccccCCCCceEEec
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEMLCD---------------RSVLALIDGVKLWD----MHRPLESDCELQLLH  103 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~~~---------------~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~  103 (136)
                      .++. . ++|+.++...+...++.               +.+...|||+ .++    +++++.++.+|.|+.
T Consensus        20 ~~~~-~-~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~-~v~~~~~~~~~L~~gDeV~i~P   88 (93)
T 3dwg_C           20 SVSA-S-GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDE-DVRFSGGLATAIADGDSVTILP   88 (93)
T ss_dssp             EEEE-C-CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTE-EGGGTTGGGCBCCTTCEEEEEE
T ss_pred             EEec-C-CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCE-EccCcCCCCcCCCCCCEEEEEC
Confidence            4453 4 48999999887654321               1478999999 776    799999999999875

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}

Probab=83.86  E-value=2.6  Score=27.86  Aligned_cols=51  Identities=16%  Similarity=0.129  Sum_probs=38.0

Q ss_pred             EEEeecCCCCHHHHHHhhchhhh---cc---------ce-------EEEEcCeeee----ecccccCCCCceEEecc
Q psy2360          51 ELIMNKNLSTPYNCAQHMSEMLC---DR---------SV-------LALIDGVKLW----DMHRPLESDCELQLLHF  104 (136)
Q Consensus        51 ~~~~~~~~tt~~dia~~i~~~~~---~~---------iv-------~a~vng~~l~----DL~~~l~~d~~Ie~i~~  104 (136)
                      ..+++  ..|+.++.+.+...++   ..         -+       ++.|||+ .+    ++++++.++.+|.++..
T Consensus        22 ~~~l~--~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~-~v~~~~~~~~~L~~gD~V~i~pp   95 (99)
T 2l52_A           22 ELPLS--GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGN-NIRHLEGLETLLKDSDEIGILPP   95 (99)
T ss_dssp             EEEEE--CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTS-CGGGTTSTTSCCCTTEEEEEECC
T ss_pred             eEEEe--CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCE-EccccCCCCCCCCCCCEEEEECC
Confidence            45555  3899999988755432   21         24       7899999 77    78999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1nyra2	59	d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS	1e-06
d1tkea1	62	d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS	5e-05

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Length = 59

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

 Score = 41.2 bits (97), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
           IN+     P+  +   +K  +T  + AQ +S  L  ++V    +G +L D+ +PLE+D  
Sbjct: 1   INIQ---FPDGNKKAFDKG-TTTEDIAQSISPGLRKKAVAGKFNG-QLVDLTKPLETDGS 55

Query: 99  LQLL 102
           ++++
Sbjct: 56  IEIV 59

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Length = 62

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (85), Expect = 5e-05
 Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 39  INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCE 98
             +T   LP+ ++   +    +P + A  +   L    +   ++G +L D    +E+D +
Sbjct: 2   PVIT---LPDGSQRHYDHA-VSPMDVALDIGPGLAKACIAGRVNG-ELVDACDLIENDAQ 56

Query: 99  LQLL 102
           L ++
Sbjct: 57  LSII 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1tkea1	62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	99.59
d1nyra2	59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	99.54
d1wxqa2	76	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.97
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	96.49
d1tygb_	65	Thiamin biosynthesis sulfur carrier protein ThiS {	96.24
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	95.29
d2cu3a1	63	Uncharacterised protein TTHA0675 {Thermus thermoph	95.06
d1rwsa_	68	Hypothetical protein PF1061 {Archaeon Pyrococcus f	89.4
d1ryja_	70	Hypothetical protein MTH1743 {Archaeon Methanobact	87.44

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=9.6e-16  Score=96.50  Aligned_cols=60  Identities=18%  Similarity=0.341  Sum_probs=57.4

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      ++|++   |||+.++++. ++|+.|+|+.+++.+++.+++|+|||+ ++||++|+++||.||++|
T Consensus         2 ~~Itl---PDG~~~~~~~-g~T~~diA~~I~~~l~k~avaa~vng~-l~dL~~~l~~d~~veiiT   61 (62)
T d1tkea1           2 PVITL---PDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGE-LVDACDLIENDAQLSIIT   61 (62)
T ss_dssp             CEEEC---TTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTE-EEETTCCBCSCEEEEEEC
T ss_pred             CEEEC---CCCCEEEcCC-CCCHHHHHHHHCchhhheEEEEEECCE-EeCCCcCcCCCCEEEEEe
Confidence            57788   9999999999 599999999999999999999999999 999999999999999997

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.54  E-value=1.4e-15  Score=95.00  Aligned_cols=59  Identities=29%  Similarity=0.510  Sum_probs=55.3

Q ss_pred             eEEEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEe
Q psy2360          39 INVTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLL  102 (136)
Q Consensus        39 i~i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i  102 (136)
                      |+|++   |||+.+++++ ++|+.|+|+.+++.+.+.+++|+|||+ ++||++|+++||.|++|
T Consensus         1 I~Itl---PDG~~~~~~~-g~T~~diA~~I~~~l~k~avaa~vNg~-~~dL~~~l~~d~~veii   59 (59)
T d1nyra2           1 INIQF---PDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQ-LVDLTKPLETDGSIEIV   59 (59)
T ss_dssp             CBBCC---TTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTE-EECTTSCCCSCBCCCEE
T ss_pred             CEEEC---CCCCEEEcCC-CCCHHHHHHHHChhhhheEEEEEECCE-EccCCcCcCCCCEEEEC
Confidence            45666   9999999999 599999999999999999999999999 99999999999999986

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: G domain-linked domain
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.97  E-value=0.00073  Score=42.76  Aligned_cols=50  Identities=18%  Similarity=0.113  Sum_probs=45.9

Q ss_pred             EEeecCCCCHHHHHHhhchhhhccceEEEE--cCeeeeecccccCCCCceEEec
Q psy2360          52 LIMNKNLSTPYNCAQHMSEMLCDRSVLALI--DGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        52 ~~~~~~~tt~~dia~~i~~~~~~~iv~a~v--ng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      +..++ ++|+.|+|..+-.+..+.++.|++  ||+ ...++++++++.-|+++|
T Consensus        24 ~~Lp~-GsTv~D~A~~IH~dlg~~~~~A~~~~~g~-~v~l~~~L~dgDvVeIiT   75 (76)
T d1wxqa2          24 FLMKK-GSTPRDLAFKVHTDLGKGFLYAINARTKR-RVGEDYELQFNDIVKIVS   75 (76)
T ss_dssp             EEEET-TCCHHHHHHHHCHHHHHTEEEEEETTTCS-BCCTTCCCCTTEEEEEEE
T ss_pred             EEeCC-CCcHHHHHHHHhHHHHhheEEEEECcCCE-ECCCCcCccCCCEEEEEE
Confidence            67888 599999999999999999999987  999 999999999999999887

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0039  Score=37.79  Aligned_cols=56  Identities=7%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             EEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          41 VTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        41 i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      |++    +|+.++++. ++|+.++++.+..  ..+.+++.+|++ +..    -.+++.++..||++.+
T Consensus         2 I~v----Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaV~vN~~-ivpk~~~~~~~L~~gD~ieIv~~   61 (65)
T d1zud21           2 ILF----NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQ-IVPREQWAQHIVQDGDQILLFQV   61 (65)
T ss_dssp             EEE----TTEEECCCT-TCBHHHHHHHHTC--CCTTEEEEETTE-ECCGGGTTTCBCCTTCEEEEEEC
T ss_pred             EEE----CCEEEEcCC-CCcHHHHHHHcCC--CCCcEEEEECCE-EcCHHHHhhccCCCCCEEEEEEE
Confidence            667    899999988 5999999998754  346678889999 765    4678899999999876

>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Bacillus subtilis [TaxId: 1423]

Probab=96.24  E-value=0.0069  Score=36.57  Aligned_cols=57  Identities=11%  Similarity=0.124  Sum_probs=45.4

Q ss_pred             EEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          41 VTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        41 i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      |++    +|+.++++++..|+.++++.....  ...+|+.+||+ +..    -.+++.++..||++.+
T Consensus         2 I~v----NG~~~~~~~~~~tl~~LL~~l~~~--~~~vAVevN~~-iv~k~~~~~~~L~~gD~IEIv~~   62 (65)
T d1tygb_           2 LQL----NGKDVKWKKDTGTIQDLLASYQLE--NKIVIVERNKE-IIGKERYHEVELCDRDVIEIVHF   62 (65)
T ss_dssp             EEE----TTEEECCSSSCCBHHHHHHHTTCT--TSCCEEEETTE-EECGGGTTTSBCCSSSEEEEEEE
T ss_pred             EEE----CCEEEEcCCCcccHHHHHHHcCCC--CCcEEEEECCE-EcCHHHcCcccCCCCCEEEEEEe
Confidence            567    899999987556999999987553  56789999998 654    4567888999999876

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.29  E-value=0.025  Score=35.19  Aligned_cols=54  Identities=9%  Similarity=0.117  Sum_probs=40.5

Q ss_pred             CCcEEEeecCCCCHHHHHHhhchhhh-------------ccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          48 EDAELIMNKNLSTPYNCAQHMSEMLC-------------DRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        48 dg~~~~~~~~~tt~~dia~~i~~~~~-------------~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      +...++++. ++|..++.+.+...++             ...+...+||+ +.+.++++.++++|-|+-
T Consensus        19 ~~~~~~~~~-~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~-~~~~d~~L~~gDevai~P   85 (88)
T d1vjka_          19 DEEEIELPE-GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGR-YVSWDEELKDGDVVGVFP   85 (88)
T ss_dssp             SEEEEEECT-TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTB-CCCTTCBCCTTCEEEEES
T ss_pred             CeEEEECCC-CCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcce-EcCCCcCcCCCCEEEEeC
Confidence            333566666 5899999888754332             24567888999 999999999999988864

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Uncharacterised protein TTHA0675
species: Thermus thermophilus [TaxId: 274]

Probab=95.06  E-value=0.043  Score=32.70  Aligned_cols=55  Identities=15%  Similarity=0.127  Sum_probs=43.2

Q ss_pred             EEeeeCCCCcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeee----cccccCCCCceEEecc
Q psy2360          41 VTYKGLPEDAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWD----MHRPLESDCELQLLHF  104 (136)
Q Consensus        41 i~~~~~~dg~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~D----L~~~l~~d~~Ie~i~~  104 (136)
                      |++    +|+.++. . .+|+.+++..+...  .+.+|+.+||+ +..    -.+++.++..||++.+
T Consensus         2 I~v----NGe~~~~-~-~~tl~~LL~~l~~~--~~~vAV~vN~~-ivpr~~~~~~~l~~gD~iEIv~~   60 (63)
T d2cu3a1           2 VWL----NGEPRPL-E-GKTLKEVLEEMGVE--LKGVAVLLNEE-AFLGLEVPDRPLRDGDVVEVVAL   60 (63)
T ss_dssp             EEE----TTEEECC-T-TCCHHHHHHHHTBC--GGGEEEEETTE-EEEGGGCCCCCCCTTCEEEEEEC
T ss_pred             EEE----CCEEEEc-C-CCCHHHHHHHcCCC--CCcEEEEECCE-EcCHHHcCcccCCCCCEEEEEEe
Confidence            566    7888888 4 38999999887543  46799999998 654    2578889999999876

>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Hypothetical protein PF1061
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.40  E-value=0.094  Score=31.94  Aligned_cols=51  Identities=8%  Similarity=0.083  Sum_probs=41.5

Q ss_pred             CcEEEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          49 DAELIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        49 g~~~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      -+.+++.. +++..|+++++.  +....++++.||+ +.-=+.+++++..+|++.
T Consensus        13 ~reiE~~~-g~~v~dvL~~~g--l~~e~~vv~~nG~-vv~eDe~v~DGD~vei~P   63 (68)
T d1rwsa_          13 EKEIEWRE-GMKVRDILRAVG--FNTESAIAKVNGK-VVLEDDEVKDGDFVEVIP   63 (68)
T ss_dssp             CCCCCCCS-SCCHHHHHHTTT--CSSCSSCEEETTE-EECSSSCCCSSCCCBCSC
T ss_pred             eeEEEecC-CcCHHHHHHHcC--CCcceEEEEECCE-EecCCcccCCCCEEEEEE
Confidence            34677877 599999999875  3456788999999 998899999998888764

>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Hypothetical protein MTH1743
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.44  E-value=1.5  Score=26.08  Aligned_cols=60  Identities=7%  Similarity=0.022  Sum_probs=41.9

Q ss_pred             eEEEeeeCCCCcE-EEeecCCCCHHHHHHhhchhhhccceEEEEcCeeeeecccccCCCCceEEec
Q psy2360          39 INVTYKGLPEDAE-LIMNKNLSTPYNCAQHMSEMLCDRSVLALIDGVKLWDMHRPLESDCELQLLH  103 (136)
Q Consensus        39 i~i~~~~~~dg~~-~~~~~~~tt~~dia~~i~~~~~~~iv~a~vng~~l~DL~~~l~~d~~Ie~i~  103 (136)
                      |++++.+ .|++. .+-.. +++..|++++..  .+...+..+.||. ++==...+.++..++++.
T Consensus         5 MtftlI~-kd~~k~~E~~~-p~~IkDiL~~lE--ipieTvVvK~NG~-~Vieeeei~dgDeieiI~   65 (70)
T d1ryja_           5 MKFTVIT-DDGKKILESGA-PRRIKDVLGELE--IPIETVVVKKNGQ-IVIDEEEIFDGDIIEVIR   65 (70)
T ss_dssp             EEEEEEE-TTEEEEEEESS-CCBHHHHHHHTT--CCTTTEEEEETTE-ECCTTSBCCTTCEEEEEE
T ss_pred             EEEEEEe-cCchhhhhcCC-ChhHHHHhcccc--ccceEEEEecCCc-EEechhhccCCCEEEEEE
Confidence            4555543 44443 45555 588999998754  3568899999999 776666677788888874