Psyllid ID: psy2371

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810------

MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTIL

ccHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccEEEEEcccHHHHHcHHHHHHHHHHHcccEEEEcccccHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEEccccHHHccccccccccccccccHHHHHHHHcccccccccccccHHHHHHcccccccccccEEEcccccEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEEccccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccccEEEEcccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccccccccccccccEEEccccHHHccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc

ccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEHHEEccccEEEEEcccccHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHccEEccccccccHHHHHHcccccHHHHHHccHcEEEEEcHHHHHHHcccccEEEEccccccHHHHHHHHHHcHHHHHcccccccccccccccccccccEEEcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccEEEEEEccccccccccccccHHHHHHHHHcccccccHcHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccEEEEcccccccccccccEEEccHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHccccccEEcHHHHHHHHHHHHHcccccEEEEEEccccccccEEEcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccEccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc

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

msfltkifgsrnqrllKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIkytkkntgdyiidYETNQVFLTENGYEKYENILIKMALRAHVLYHKNkhyiiknnkiiivDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKletitvppnkinkrkDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKnissevkkknkikklknewMLLHDKVISSGGlhiigterhesrridnqlrgrsgrqgdpgsSRFYLSLDDSLLKFFSSDQIKIVMEklkipkgksiesnlaSYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQErnklleskniseiIKILRYDVLIRLFSKYislkksdkewDIIGLELILKKEFKLDISFKiffkkkytikdFFIKILYTFDKKYENKIKIlnnkkflnfERNIILQSIDKYWIEHLLSLDQLRQGINLrsyaqkdpkreYKREAFKLFHKMLNLIKYEAIKKIMTIL

MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVildeidsilideARTPLIISGEIKNNAQYFYKIINPIPKLLVPEidtknikknikytkkntGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLyhknkhyiiknnkiiiVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDikknissevkkknkikklkneWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRfylslddsllkffssdQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEfkldisfkiffkkkytikdffikiLYTFDkkyenkikilnnkkflnfeRNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTIL

******IFGSRNQRLLKKYQKIVQKI********************************DSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGT**************************FYLSLDDSLLKFFSSDQIKIVMEKLKIPKGK*I**NLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQK***REYKREAFKLFHKMLNLIKYEAIKKIMT**

*SFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEI*********KYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDI***********NKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTIL

MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVP****************NTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDN*LR*******DPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTIL

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSFLTKIFGSRxxxxxxxxxxxxxxxxxxxxxxxxxxxxELQNQTSKLKQSIHSGETLDSILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTIL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		816	2.2.26 [Sep-21-2011]
A4G8S7		921	Protein translocase subun	yes	N/A	0.995	0.881	0.600	0.0
A6T2E8		920	Protein translocase subun	yes	N/A	0.992	0.880	0.601	0.0
B2JHF1		936	Protein translocase subun	yes	N/A	0.992	0.865	0.564	0.0
A9AI87		932	Protein translocase subun	yes	N/A	0.992	0.869	0.559	0.0
A0K496		932	Protein translocase subun	yes	N/A	0.992	0.869	0.558	0.0
B1JV87		932	Protein translocase subun	yes	N/A	0.992	0.869	0.558	0.0
A4JBA3		930	Protein translocase subun	yes	N/A	0.992	0.870	0.559	0.0
B4E5Y3		933	Protein translocase subun	yes	N/A	0.992	0.868	0.559	0.0
Q1BZF4		932	Protein translocase subun	yes	N/A	0.992	0.869	0.558	0.0
Q39JW1		932	Protein translocase subun	yes	N/A	0.992	0.869	0.555	0.0

>sp\|A4G8S7\|SECA_HERAR Protein translocase subunit SecA OS=Herminiimonas arsenicoxydans GN=secA PE=3 SV=1	Back alignment and function desciption

 Score = 1085 bits (2805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/841 (60%), Positives = 654/841 (77%), Gaps = 29/841 (3%)

Query: 1   MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
           MS LT+IFGSRNQRLLK+YQK V++IN LE  M++LSD  LQ +T + K+ +  GE +DS
Sbjct: 1   MSLLTQIFGSRNQRLLKQYQKTVREINALEPAMEQLSDAALQAKTPEFKERLAKGEDIDS 60

Query: 61  ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
           ILP+AF+VCREASKRVLKMRHFDVQLIGG+ LHYG I+EM TGEGKTL+ATL  YLN+L+
Sbjct: 61  ILPEAFAVCREASKRVLKMRHFDVQLIGGMTLHYGKIAEMGTGEGKTLMATLPTYLNALT 120

Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
           G+GVH+VT++DYLA+RDAEWM  LY WLGLS GVN S+I H  K+ +Y +DITYGTNNEF
Sbjct: 121 GKGVHVVTVNDYLAQRDAEWMGTLYGWLGLSTGVNMSQIDHDAKQIAYNSDITYGTNNEF 180

Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240
           GFDYLRDNMV+++ DRVQR L+F ++DE+DSILIDEARTPLIISG+ +N+ + ++K IN 
Sbjct: 181 GFDYLRDNMVYDTADRVQRDLHFAVVDEVDSILIDEARTPLIISGQAENHTELYHK-INA 239

Query: 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKM------ 294
           +P LL  +I  +    + K T +  GDY  D + +QV LTE G+EK E IL +M      
Sbjct: 240 VPPLLTLQIGEET--PDGKGTVEVPGDYTKDEKAHQVLLTEAGHEKAEQILTRMGLLPEG 297

Query: 295 -----------------ALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQ 337
                            ALRAH LYHK++HY+++N++++IVDEFTGRLM  RRW++GLHQ
Sbjct: 298 ASLYDAANITLIHHLYAALRAHTLYHKDQHYVVQNDEVVIVDEFTGRLMTGRRWSDGLHQ 357

Query: 338 ALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPN 397
           A+EAKE + IQNE QTLASITFQNYFRMY K++GMTGTA+TEAYEFQEIY LET+ +P N
Sbjct: 358 AVEAKEGVRIQNENQTLASITFQNYFRMYSKLAGMTGTADTEAYEFQEIYGLETVVIPQN 417

Query: 398 KINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLP 457
           + N+RKD QD++YK+ EEKY A+L DI++CY + QPVLVGTTSIENSELLS IL K NLP
Sbjct: 418 RPNQRKDRQDQVYKSSEEKYGAMLKDIQDCYERGQPVLVGTTSIENSELLSGILNKANLP 477

Query: 458 HSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNIS-SEV 516
           H+VLNAKQH  EA+IIAQAG PK ITIATNMAGRGTDI+LGGN+   ++ I+ N + SE 
Sbjct: 478 HNVLNAKQHAREAEIIAQAGRPKAITIATNMAGRGTDIVLGGNVAKQVQIIEANDALSEA 537

Query: 517 KKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 576
           +K  + +KL +EW  LHD+V+++GGLHIIGTERHESRR+DNQLRGR+GRQGDPGSSRFYL
Sbjct: 538 EKTAQAQKLGDEWQSLHDQVVAAGGLHIIGTERHESRRVDNQLRGRAGRQGDPGSSRFYL 597

Query: 577 SLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEY 636
           SLDD+LL+ F+ D+++ +M++LK+P+G+ IE+ + S SIESAQRK+E RNFDIRKQLLEY
Sbjct: 598 SLDDALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLLEY 657

Query: 637 DDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLEL 696
           DD+ N+QRK+I Q+RN+LLE++++SE+I  LR  V   LF  Y+  +  +++WD+  L+ 
Sbjct: 658 DDVANDQRKVIYQQRNELLETQDVSELITSLRQGVFADLFRTYVPEQSMEEQWDLKALDE 717

Query: 697 ILKKEFKLDISFKIFFKKKYTIKD--FFIKILYTFDKKYENKIKILNNKKFLNFERNIIL 754
           IL+ E+++D S     + +  I D     ++L   D  YE K+ I+  + F  FER ++L
Sbjct: 718 ILRNEWQIDFSLAAVLEAEPNITDEEMLERLLQVTDAAYEAKVAIVGRESFAGFERGVML 777

Query: 755 QSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMT 814
           QS+D  W EHL +LD LRQGI+LR YAQK+PK+EYKREAF+LF +MLNLIK   +K +MT
Sbjct: 778 QSVDSNWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFGQMLNLIKDAVVKTVMT 837

Query: 815 I 815
           +
Sbjct: 838 V 838

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
Herminiimonas arsenicoxydans (taxid: 204773)

>sp\|A6T2E8\|SECA_JANMA Protein translocase subunit SecA OS=Janthinobacterium sp. (strain Marseille) GN=secA PE=3 SV=1	Back alignment and function description

>sp\|B2JHF1\|SECA_BURP8 Protein translocase subunit SecA OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=secA PE=3 SV=1	Back alignment and function description

>sp\|A9AI87\|SECA_BURM1 Protein translocase subunit SecA OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=secA PE=3 SV=1	Back alignment and function description

>sp\|A0K496\|SECA_BURCH Protein translocase subunit SecA OS=Burkholderia cenocepacia (strain HI2424) GN=secA PE=3 SV=1	Back alignment and function description

>sp\|B1JV87\|SECA_BURCC Protein translocase subunit SecA OS=Burkholderia cenocepacia (strain MC0-3) GN=secA PE=3 SV=1	Back alignment and function description

>sp\|A4JBA3\|SECA_BURVG Protein translocase subunit SecA OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=secA PE=3 SV=1	Back alignment and function description

>sp\|B4E5Y3\|SECA_BURCJ Protein translocase subunit SecA OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=secA PE=3 SV=1	Back alignment and function description

>sp\|Q1BZF4\|SECA_BURCA Protein translocase subunit SecA OS=Burkholderia cenocepacia (strain AU 1054) GN=secA PE=3 SV=1	Back alignment and function description

>sp\|Q39JW1\|SECA_BURS3 Protein translocase subunit SecA OS=Burkholderia sp. (strain 383) GN=secA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		816
409408902		918	preprotein translocase SecA subunit [Her	0.992	0.882	0.609	0.0
300309688		918	preprotein translocase subunit SecA [Her	0.992	0.882	0.606	0.0
398835516		918	preprotein translocase, SecA subunit [He	0.992	0.882	0.603	0.0
415946999		917	Protein translocase [Herbaspirillum fris	0.992	0.883	0.603	0.0
134095960		921	preprotein translocase ATPase secretion	0.995	0.881	0.600	0.0
152979895		920	preprotein translocase subunit SecA [Jan	0.992	0.880	0.601	0.0
445495043		928	protein translocase subunit SecA [Janthi	0.992	0.872	0.590	0.0
395760950		922	preprotein translocase ATPase secretion	0.992	0.878	0.600	0.0
329908358		920	Protein export cytoplasm protein SecA AT	0.995	0.882	0.586	0.0
399018435		924	preprotein translocase, SecA subunit [He	0.992	0.876	0.595	0.0

>gi\|409408902\|ref\|ZP_11257337.1\| preprotein translocase SecA subunit [Herbaspirillum sp. GW103] gi\|386432224\|gb\|EIJ45052.1\| preprotein translocase SecA subunit [Herbaspirillum sp. GW103]	Back alignment and taxonomy information

 Score = 1098 bits (2841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/843 (60%), Positives = 669/843 (79%), Gaps = 33/843 (3%)

Query: 1   MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
           MSFLTKIFGSRNQRLLK+YQKIV++IN LE  ++KLSD ELQ +T + KQ I  GETLD+
Sbjct: 1   MSFLTKIFGSRNQRLLKQYQKIVRQINALEPSVEKLSDAELQAKTPEFKQRIAGGETLDA 60

Query: 61  ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
           ILP+AF+VCREAS+RVLKMRHFDVQLIGG+ALH+G I+EM+TGEGKTL+ATL AYLN+L+
Sbjct: 61  ILPEAFAVCREASRRVLKMRHFDVQLIGGMALHFGKIAEMRTGEGKTLMATLPAYLNALA 120

Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
           G+GVH+VT++DYLA+RDAE M  LY+WLGL+ GVN S++ H +K+++Y ADITYGTNNEF
Sbjct: 121 GKGVHVVTVNDYLAQRDAEDMGRLYSWLGLTTGVNLSQMEHDVKQEAYAADITYGTNNEF 180

Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240
           GFDYLRDNMVF+++DRVQR LNF I+DE+DSILIDEARTPLIISG+ +N+ + ++K IN 
Sbjct: 181 GFDYLRDNMVFDADDRVQRALNFAIVDEVDSILIDEARTPLIISGQAENHTELYHK-INA 239

Query: 241 IPKLLVPEI--DTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILIKM---- 294
           +P LL  +I  +T + K  I+      GDY  D +++QV LTE G++K E IL +M    
Sbjct: 240 VPPLLTLQIGEETPDGKGKIEV----PGDYTKDEKSHQVLLTEAGHDKAEEILTQMGLLP 295

Query: 295 -------------------ALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGL 335
                              ALRAH LYH+++HY+++N +++IVDEFTGRLM  RRW++GL
Sbjct: 296 EGASLYDAANITLIHHLYAALRAHTLYHRDQHYVVQNGEVVIVDEFTGRLMTGRRWSDGL 355

Query: 336 HQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVP 395
           HQA+EAKE ++IQNE QTLASITFQNYFRMY K+SGMTGTA+TEAYEFQEIY LET+ +P
Sbjct: 356 HQAVEAKEGVKIQNENQTLASITFQNYFRMYAKLSGMTGTADTEAYEFQEIYHLETVVIP 415

Query: 396 PNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNN 455
           PN+ N RKD QD++YKT +EKY A++ DI++CY + QPVLVGTTSIENSELLS IL K+ 
Sbjct: 416 PNRPNARKDRQDQVYKTAQEKYMAMVKDIQDCYERGQPVLVGTTSIENSELLSGILTKSK 475

Query: 456 LPHSVLNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNIS-S 514
           LPH+VLNAKQH  EA+I+AQAG PKMITIATNMAGRGTDI+LGGN+   I+ I+ + S S
Sbjct: 476 LPHNVLNAKQHAREAEIVAQAGRPKMITIATNMAGRGTDIVLGGNVGKQIQLIEADESLS 535

Query: 515 EVKKKNKIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRF 574
           E  K  K ++L++EW  LHD V+++GGLHIIGTERHESRR+DNQLRGRSGRQGDPGSSRF
Sbjct: 536 EADKAAKSQQLRDEWQSLHDHVVNAGGLHIIGTERHESRRVDNQLRGRSGRQGDPGSSRF 595

Query: 575 YLSLDDSLLKFFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLL 634
           YLSLDD+LL+ F+ D+++ +M++LK+P+G+ IE+ + S SIESAQRK+E RNFDIRKQLL
Sbjct: 596 YLSLDDALLRIFAGDRVRAIMDRLKMPEGEPIEAGIVSRSIESAQRKVEARNFDIRKQLL 655

Query: 635 EYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGL 694
           EYDD+ N+QRK+I Q+RN+LLES  ++E+I  LR  V   LF +Y+  +  +++WDI GL
Sbjct: 656 EYDDVANDQRKVIYQQRNELLESVEMAEMIASLREGVFTDLFRQYVPAESMEEQWDIPGL 715

Query: 695 ELILKKEFKLDISFKIFFKKKYTIKD--FFIKILYTFDKKYENKIKILNNKKFLNFERNI 752
           + +L  E++L++  +   K +  + D     ++L      YE+K+ ++  + F  FER++
Sbjct: 716 QAVLNNEWQLEVDLEALLKDEPDMADDELLERLLTAAKDAYESKVAVVGVEAFAGFERSV 775

Query: 753 ILQSIDKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKI 812
           +LQSID +W EHL +LD LRQGI+LR YAQK+PK+EYKREAF+LF +ML+LIK E IK +
Sbjct: 776 MLQSIDNHWREHLAALDHLRQGIHLRGYAQKNPKQEYKREAFELFAQMLDLIKNEVIKVV 835

Query: 813 MTI 815
           MT+
Sbjct: 836 MTV 838

Source: Herbaspirillum sp. GW103

Species: Herbaspirillum sp. GW103

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|300309688\|ref\|YP_003773780.1\| preprotein translocase subunit SecA [Herbaspirillum seropedicae SmR1] gi\|300072473\|gb\|ADJ61872.1\| preprotein translocase SecA subunit protein [Herbaspirillum seropedicae SmR1]	Back alignment and taxonomy information

>gi\|398835516\|ref\|ZP_10592878.1\| preprotein translocase, SecA subunit [Herbaspirillum sp. YR522] gi\|398216302\|gb\|EJN02855.1\| preprotein translocase, SecA subunit [Herbaspirillum sp. YR522]	Back alignment and taxonomy information

>gi\|415946999\|ref\|ZP_11556538.1\| Protein translocase [Herbaspirillum frisingense GSF30] gi\|407758136\|gb\|EKF68006.1\| Protein translocase [Herbaspirillum frisingense GSF30]	Back alignment and taxonomy information

>gi\|134095960\|ref\|YP_001101035.1\| preprotein translocase ATPase secretion subunit [Herminiimonas arsenicoxydans] gi\|172044169\|sp\|A4G8S7.1\|SECA_HERAR RecName: Full=Protein translocase subunit SecA gi\|133739863\|emb\|CAL62914.1\| Preprotein translocase subunit SecA [Herminiimonas arsenicoxydans]	Back alignment and taxonomy information

>gi\|152979895\|ref\|YP_001354695.1\| preprotein translocase subunit SecA [Janthinobacterium sp. Marseille] gi\|179307859\|sp\|A6T2E8.1\|SECA_JANMA RecName: Full=Protein translocase subunit SecA gi\|151279972\|gb\|ABR88382.1\| preprotein translocase SecA subunit [Janthinobacterium sp. Marseille]	Back alignment and taxonomy information

>gi\|445495043\|ref\|ZP_21462087.1\| protein translocase subunit SecA [Janthinobacterium sp. HH01] gi\|444791204\|gb\|ELX12751.1\| protein translocase subunit SecA [Janthinobacterium sp. HH01]	Back alignment and taxonomy information

>gi\|395760950\|ref\|ZP_10441619.1\| preprotein translocase ATPase secretion subunit [Janthinobacterium lividum PAMC 25724]	Back alignment and taxonomy information

>gi\|329908358\|ref\|ZP_08274856.1\| Protein export cytoplasm protein SecA ATPase RNA helicase [Oxalobacteraceae bacterium IMCC9480] gi\|327546726\|gb\|EGF31672.1\| Protein export cytoplasm protein SecA ATPase RNA helicase [Oxalobacteraceae bacterium IMCC9480]	Back alignment and taxonomy information

>gi\|399018435\|ref\|ZP_10720614.1\| preprotein translocase, SecA subunit [Herbaspirillum sp. CF444] gi\|398101551\|gb\|EJL91767.1\| preprotein translocase, SecA subunit [Herbaspirillum sp. CF444]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		816
TIGR_CMR\|SO_4211		908	SO_4211 "preprotein translocas	0.839	0.754	0.493	1.6e-195
UNIPROTKB\|Q9KPH4		903	secA "Protein translocase subu	0.493	0.446	0.520	1.5e-194
TIGR_CMR\|VC_2394		903	VC_2394 "preprotein translocas	0.493	0.446	0.520	1.5e-194
TIGR_CMR\|CBU_0147		913	CBU_0147 "preprotein transloca	0.491	0.439	0.484	6.5e-194
UNIPROTKB\|P10408		901	secA [Escherichia coli K-12 (t	0.843	0.763	0.486	3.9e-190
TIGR_CMR\|CPS_4454		893	CPS_4454 "preprotein transloca	0.841	0.769	0.496	1.6e-175
TIGR_CMR\|ECH_1149		862	ECH_1149 "preprotein transloca	0.833	0.788	0.493	6.7e-173
TIGR_CMR\|CHY_0162		874	CHY_0162 "preprotein transloca	0.846	0.790	0.467	6e-172
TIGR_CMR\|CJE_1020		862	CJE_1020 "preprotein transloca	0.604	0.571	0.495	8.3e-169
NCBI_NP\|NP_357091.2		902	secA "preprotein translocase s	0.844	0.763	0.453	1.2e-166

TIGR_CMR\|SO_4211 SO_4211 "preprotein translocase, SecA subunit" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

 Score = 1722 (611.2 bits), Expect = 1.6e-195, Sum P(2) = 1.6e-195
 Identities = 356/721 (49%), Positives = 479/721 (66%)

Query:     4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDSILP 63
             LTK+FGSRN R LK  QK+V KIN LE+  +KL+DE+L+ +T++ ++ + +G +LDSI+ 
Sbjct:     6 LTKVFGSRNDRTLKGLQKVVNKINALEADYEKLTDEQLKAKTAEFRERLAAGASLDSIMA 65

Query:    64 KAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQG 123
             +AF+  REASKRV +MRHFDVQL+GG+ L    I+EM+TGEGKTL ATL AYLN+L+G+G
Sbjct:    66 EAFATVREASKRVFEMRHFDVQLLGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGKG 125

Query:   124 VHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEFGFD 183
             VH++T++DYLA+RDAE    L+ +LGL++G+N + +    KK +Y ADITYGTNNEFGFD
Sbjct:   126 VHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQDKKDAYNADITYGTNNEFGFD 185

Query:   184 YLRDNMVFNSNDRVQRKLNFVXXXXXXXXXXXXARTPLIISGEIKNNAQYFYKIINPIPK 243
             YLRDNM F+  +RVQR L++             ARTPLIISG  +++++ + KI   IP 
Sbjct:   186 YLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPN 245

Query:   244 LLVPEXXXXXXXXXXXXXXXXXGDYIIDYETNQVFLTENGYEKYENILIKM--------- 294
             L+  +                 GDY ID +  QV  TE G EK EN+LI+          
Sbjct:   246 LIRQDKEDSEEYVGE-------GDYTIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSL 298

Query:   295 --------------ALRAHVLXXXXXXXXXXXXXXXXVDEFTGRLMKTRRWAEGLHQALE 340
                           ALRAH L                VDE TGR M  RRW+EGLHQA+E
Sbjct:   299 YSAANISLLHHVNAALRAHTLFERDVDYIVQDGEVIIVDEHTGRTMPGRRWSEGLHQAVE 358

Query:   341 AKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKIN 400
             AKE + IQNE QTLASITFQNYFR+Y+K++GMTGTA+TEA+EFQ IY L+T+ VP N+  
Sbjct:   359 AKEGVRIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPM 418

Query:   401 KRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSV 460
              RKD+ D +Y T  EKYQAI+ DIK+C  + QPVLVGT SIE SELL+ ++ K  +PH V
Sbjct:   419 VRKDMADLVYLTANEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHQV 478

Query:   461 LNAKQHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDXXXXXXXXXXXXX 520
             LNAK H+ EA+I+AQAG    +TIATNMAGRGTDI+LGGN +  I               
Sbjct:   479 LNAKFHEKEAEIVAQAGRTGAVTIATNMAGRGTDIVLGGNWNMEID------ALENPTPE 532

Query:   521 XXXXXXXXWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRXXXXXXX 580
                     W L HD V+++GGLHI+GTERHESRRIDNQLRGR+GRQGD GSSR       
Sbjct:   533 QKAKIKADWQLRHDAVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592

Query:   581 XXXXXXXXXQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIY 640
                      ++  +M+KL + +G++IE    S +IE+AQRK+E RNFDIRKQLLE+DD+ 
Sbjct:   593 SLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIENAQRKVEARNFDIRKQLLEFDDVA 652

Query:   641 NNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKK 700
             N+QR+++  +RN+L+++++I++ I+ ++ DV+  +  +YI  +  ++ WD+ GLE  L +
Sbjct:   653 NDQRQVVYAQRNELMDAESIADTIQNIQDDVISAVIDQYIPPQSVEELWDVPGLEQRLHQ 712

Query:   701 E 701
             E
Sbjct:   713 E 713

GO:0005524 "ATP binding" evidence=ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0009306 "protein secretion" evidence=ISS

UNIPROTKB\|Q9KPH4 secA "Protein translocase subunit SecA" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2394 VC_2394 "preprotein translocase, SecA subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_0147 CBU_0147 "preprotein translocase, SecA subunit" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

UNIPROTKB\|P10408 secA [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_4454 CPS_4454 "preprotein translocase, SecA subunit" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_1149 ECH_1149 "preprotein translocase, SecA subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_0162 CHY_0162 "preprotein translocase, SecA subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|CJE_1020 CJE_1020 "preprotein translocase, SecA subunit" [Campylobacter jejuni RM1221 (taxid:195099)]	Back alignment and assigned GO terms

NCBI_NP\|NP_357091.2 secA "preprotein translocase subunit SecA" [Agrobacterium fabrum str. C58 (taxid:176299)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A1WPS8	SECA_VEREI	No assigned EC number	0.5308	0.9914	0.8822	yes	N/A
A3NDV4	SECA_BURP6	No assigned EC number	0.5595	0.9926	0.8700	yes	N/A
B9MDY4	SECA_ACIET	No assigned EC number	0.5464	0.9938	0.8844	yes	N/A
A1W465	SECA_ACISJ	No assigned EC number	0.5452	0.9938	0.8844	yes	N/A
Q0AH18	SECA_NITEC	No assigned EC number	0.5552	0.9828	0.8822	yes	N/A
B2SYW6	SECA_BURPP	No assigned EC number	0.5642	0.9926	0.8653	yes	N/A
Q12FA8	SECA_POLSJ	No assigned EC number	0.5416	0.9938	0.8805	yes	N/A
B3R6V0	SECA_CUPTR	No assigned EC number	0.5544	0.9865	0.8702	yes	N/A
A4SV83	SECA_POLSQ	No assigned EC number	0.5612	0.9938	0.8805	yes	N/A
Q5P705	SECA_AROAE	No assigned EC number	0.5392	0.9877	0.8886	yes	N/A
Q7NQ59	SECA_CHRVO	No assigned EC number	0.5392	0.9828	0.8881	yes	N/A
Q63QK6	SECA_BURPS	No assigned EC number	0.5595	0.9926	0.8700	yes	N/A
Q3JNE8	SECA_BURP1	No assigned EC number	0.5595	0.9926	0.8700	yes	N/A
Q0BIJ2	SECA_BURCM	No assigned EC number	0.5559	0.9926	0.8700	yes	N/A
Q2Y647	SECA1_NITMU	No assigned EC number	0.5464	0.9828	0.8745	yes	N/A
A1TTE9	SECA_ACIAC	No assigned EC number	0.5416	0.9938	0.8796	yes	N/A
A4G8S7	SECA_HERAR	No assigned EC number	0.6004	0.9950	0.8816	yes	N/A
B2UCW7	SECA_RALPJ	No assigned EC number	0.5595	0.9926	0.8672	yes	N/A
Q0K6N3	SECA_CUPNH	No assigned EC number	0.5532	0.9865	0.8702	yes	N/A
A4JBA3	SECA_BURVG	No assigned EC number	0.5595	0.9926	0.8709	yes	N/A
Q62GT8	SECA_BURMA	No assigned EC number	0.5595	0.9926	0.8700	yes	N/A
B1XT18	SECA_POLNS	No assigned EC number	0.5552	0.9938	0.8805	yes	N/A
B1Y0N7	SECA_LEPCP	No assigned EC number	0.5410	0.9901	0.8792	yes	N/A
A1VK79	SECA_POLNA	No assigned EC number	0.5464	0.9938	0.8805	yes	N/A
A9BP81	SECA_DELAS	No assigned EC number	0.5416	0.9938	0.8863	yes	N/A
C1D5K2	SECA_LARHH	No assigned EC number	0.5428	0.9828	0.8852	yes	N/A
A6T2E8	SECA_JANMA	No assigned EC number	0.6014	0.9926	0.8804	yes	N/A
Q1BZF4	SECA_BURCA	No assigned EC number	0.5583	0.9926	0.8690	yes	N/A
B2JHF1	SECA_BURP8	No assigned EC number	0.5642	0.9926	0.8653	yes	N/A
B4E5Y3	SECA_BURCJ	No assigned EC number	0.5595	0.9926	0.8681	yes	N/A
Q8XVJ6	SECA_RALSO	No assigned EC number	0.5488	0.9926	0.8672	yes	N/A
B1JV87	SECA_BURCC	No assigned EC number	0.5583	0.9926	0.8690	yes	N/A
A0K496	SECA_BURCH	No assigned EC number	0.5583	0.9926	0.8690	yes	N/A
Q2SZH4	SECA_BURTA	No assigned EC number	0.5595	0.9926	0.8709	yes	N/A
A3NZK5	SECA_BURP0	No assigned EC number	0.5595	0.9926	0.8700	yes	N/A
A2S5T4	SECA_BURM9	No assigned EC number	0.5595	0.9926	0.8700	yes	N/A
B1YST3	SECA_BURA4	No assigned EC number	0.5559	0.9926	0.8700	yes	N/A
Q47AB4	SECA_DECAR	No assigned EC number	0.5404	0.9828	0.8871	yes	N/A
Q1GZ36	SECA_METFK	No assigned EC number	0.5440	0.9828	0.8832	yes	N/A
Q46X03	SECA_CUPPJ	No assigned EC number	0.5622	0.9852	0.8701	yes	N/A
A3MR73	SECA_BURM7	No assigned EC number	0.5595	0.9926	0.8700	yes	N/A
Q21UD1	SECA_RHOFD	No assigned EC number	0.5422	0.9926	0.8794	yes	N/A
Q82W86	SECA_NITEU	No assigned EC number	0.5600	0.9828	0.8822	yes	N/A
Q1LIN6	SECA_RALME	No assigned EC number	0.5559	0.9926	0.8709	yes	N/A
Q39JW1	SECA_BURS3	No assigned EC number	0.5559	0.9926	0.8690	yes	N/A
A9AI87	SECA_BURM1	No assigned EC number	0.5595	0.9926	0.8690	yes	N/A
Q13U01	SECA_BURXL	No assigned EC number	0.5654	0.9926	0.8653	yes	N/A
C5CXY9	SECA_VARPS	No assigned EC number	0.5440	0.9938	0.8720	yes	N/A
A2SJF9	SECA_METPP	No assigned EC number	0.5493	0.9901	0.8801	yes	N/A
A1V0Q8	SECA_BURMS	No assigned EC number	0.5595	0.9926	0.8700	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		816
PRK12904		830	PRK12904, PRK12904, preprotein translocase subunit	0.0
TIGR00963		745	TIGR00963, secA, preprotein translocase, SecA subu	0.0
COG0653		822	COG0653, SecA, Preprotein translocase subunit SecA	0.0
PRK12906		796	PRK12906, secA, preprotein translocase subunit Sec	0.0
PRK13107		908	PRK13107, PRK13107, preprotein translocase subunit	0.0
PRK13103		913	PRK13103, secA, preprotein translocase subunit Sec	0.0
PRK09200		790	PRK09200, PRK09200, preprotein translocase subunit	0.0
PRK13104		896	PRK13104, secA, preprotein translocase subunit Sec	0.0
PRK12903		925	PRK12903, secA, preprotein translocase subunit Sec	0.0
smart00957		380	smart00957, SecA_DEAD, SecA DEAD-like domain	0.0
TIGR03714		762	TIGR03714, secA2, accessory Sec system translocase	0.0
PRK12898		656	PRK12898, secA, preprotein translocase subunit Sec	0.0
PRK12902		939	PRK12902, secA, preprotein translocase subunit Sec	0.0
CHL00122		870	CHL00122, secA, preprotein translocase subunit Sec	0.0
pfam07517		381	pfam07517, SecA_DEAD, SecA DEAD-like domain	0.0
PRK12326		764	PRK12326, PRK12326, preprotein translocase subunit	0.0
TIGR04221		762	TIGR04221, SecA2_Mycobac, accessory Sec system tra	1e-172
PRK12901		1112	PRK12901, secA, preprotein translocase subunit Sec	1e-164
PRK12900		1025	PRK12900, secA, preprotein translocase subunit Sec	1e-154
PRK12899		970	PRK12899, secA, preprotein translocase subunit Sec	1e-140
PRK12901		1112	PRK12901, secA, preprotein translocase subunit Sec	2e-80
PRK12899		970	PRK12899, secA, preprotein translocase subunit Sec	1e-76
PRK12900		1025	PRK12900, secA, preprotein translocase subunit Sec	4e-74
pfam07516		213	pfam07516, SecA_SW, SecA Wing and Scaffold domain	1e-71
CHL00122		870	CHL00122, secA, preprotein translocase subunit Sec	1e-67
PRK12902		939	PRK12902, secA, preprotein translocase subunit Sec	2e-64
smart00958		114	smart00958, SecA_PP_bind, SecA preprotein cross-li	2e-32
pfam01043		113	pfam01043, SecA_PP_bind, SecA preprotein cross-lin	2e-31
PRK12326		764	PRK12326, PRK12326, preprotein translocase subunit	6e-07
pfam00270		169	pfam00270, DEAD, DEAD/DEAH box helicase	0.002

>gnl\|CDD\|237259 PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

 Score = 1293 bits (3348), Expect = 0.0
 Identities = 455/831 (54%), Positives = 605/831 (72%), Gaps = 39/831 (4%)

Query: 1   MSFLTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGETLDS 60
           +  L KIFGSRN R LK+ +KIV KIN LE  M+KLSDEEL+ +T++ K+ +  GETLD 
Sbjct: 2   LGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDD 61

Query: 61  ILPKAFSVCREASKRVLKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLS 120
           +LP+AF+V REASKRVL MRHFDVQLIGG+ LH G I+EM+TGEGKTLVATL AYLN+L+
Sbjct: 62  LLPEAFAVVREASKRVLGMRHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALT 121

Query: 121 GQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNSSEISHSLKKKSYEADITYGTNNEF 180
           G+GVH+VT++DYLAKRDAEWM  LY +LGLS+GV  S +S   ++++Y ADITYGTNNEF
Sbjct: 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAADITYGTNNEF 181

Query: 181 GFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYKIINP 240
           GFDYLRDNMVF+  +RVQR LN+ I+DE+DSILIDEARTPLIISG  +++++  YK  N 
Sbjct: 182 GFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSE-LYKRANK 240

Query: 241 IPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENIL--------- 291
           I   L  E                 GDY +D ++  V LTE G EK E +L         
Sbjct: 241 IVPTLEKE-----------------GDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPE 283

Query: 292 -------IKMALRAHVLYHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKEN 344
                  +  ALRAH L+ ++  YI+K+ +++IVDEFTGRLM  RR+++GLHQA+EAKE 
Sbjct: 284 NIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEG 343

Query: 345 LEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAYEFQEIYKLETITVPPNKINKRKD 404
           ++IQNE QTLASITFQNYFRMY+K++GMTGTA+TEA EF+EIY L+ + +P N+   R D
Sbjct: 344 VKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRID 403

Query: 405 LQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVLNAK 464
             D IYKT +EK+ A++ DIK  + K QPVLVGT SIE SELLS +LKK  +PH+VLNAK
Sbjct: 404 HPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463

Query: 465 QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIKDIKKNISSEVKKKNKIKK 524
            H+ EA+IIAQAG P  +TIATNMAGRGTDI LGGN +     + +  + E     +I K
Sbjct: 464 NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEE-----QIAK 518

Query: 525 LKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLK 584
           +K EW   H++V+ +GGLH+IGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSL+D L++
Sbjct: 519 IKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMR 578

Query: 585 FFSSDQIKIVMEKLKIPKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQR 644
            F SD++K +M++L + +G++IE  + + +IE+AQ+K+E RNFDIRKQLLEYDD+ N+QR
Sbjct: 579 IFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQR 638

Query: 645 KIICQERNKLLESKNISEIIKILRYDVLIRLFSKYISLKKSDKEWDIIGLELILKKEFKL 704
           K+I  +RN++LE +++SE I  +R DV+  L   YI     +++WD+ GLE  LK +F L
Sbjct: 639 KVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGL 698

Query: 705 DISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKILNNKKFLNFERNIILQSIDKYWIEH 764
           ++  + + ++    ++   +IL   ++ YE K + L  ++   FER ++LQ +D  W EH
Sbjct: 699 ELPIEEWLEEGLDEEELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREH 758

Query: 765 LLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI 815
           L ++D LRQGI LR YAQKDP +EYKRE F+LF +ML+ IK E ++ +M +
Sbjct: 759 LAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKV 809

Length = 830

>gnl\|CDD\|233212 TIGR00963, secA, preprotein translocase, SecA subunit	Back alignment and domain information

>gnl\|CDD\|223726 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>gnl\|CDD\|237260 PRK12906, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|183863 PRK13107, PRK13107, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|183860 PRK13104, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|214937 smart00957, SecA_DEAD, SecA DEAD-like domain	Back alignment and domain information

>gnl\|CDD\|163426 TIGR03714, secA2, accessory Sec system translocase SecA2	Back alignment and domain information

>gnl\|CDD\|237253 PRK12898, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated	Back alignment and domain information

>gnl\|CDD\|219445 pfam07517, SecA_DEAD, SecA DEAD-like domain	Back alignment and domain information

>gnl\|CDD\|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|234506 TIGR04221, SecA2_Mycobac, accessory Sec system translocase SecA2, Actinobacterial type	Back alignment and domain information

>gnl\|CDD\|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|237254 PRK12899, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|237255 PRK12900, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|219444 pfam07516, SecA_SW, SecA Wing and Scaffold domain	Back alignment and domain information

>gnl\|CDD\|214371 CHL00122, secA, preprotein translocase subunit SecA; Validated	Back alignment and domain information

>gnl\|CDD\|237257 PRK12902, secA, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|214938 smart00958, SecA_PP_bind, SecA preprotein cross-linking domain	Back alignment and domain information

>gnl\|CDD\|144583 pfam01043, SecA_PP_bind, SecA preprotein cross-linking domain	Back alignment and domain information

>gnl\|CDD\|237060 PRK12326, PRK12326, preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>gnl\|CDD\|215832 pfam00270, DEAD, DEAD/DEAH box helicase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		816
PRK12902		939	secA preprotein translocase subunit SecA; Reviewed	100.0
PRK12901		1112	secA preprotein translocase subunit SecA; Reviewed	100.0
PRK12903		925	secA preprotein translocase subunit SecA; Reviewed	100.0
PRK13103		913	secA preprotein translocase subunit SecA; Reviewed	100.0
PRK13107		908	preprotein translocase subunit SecA; Reviewed	100.0
PRK13104		896	secA preprotein translocase subunit SecA; Reviewed	100.0
CHL00122		870	secA preprotein translocase subunit SecA; Validate	100.0
PRK12904		830	preprotein translocase subunit SecA; Reviewed	100.0
PRK12900		1025	secA preprotein translocase subunit SecA; Reviewed	100.0
PRK12906		796	secA preprotein translocase subunit SecA; Reviewed	100.0
PRK12326		764	preprotein translocase subunit SecA; Reviewed	100.0
COG0653		822	SecA Preprotein translocase subunit SecA (ATPase,	100.0
PRK12899		970	secA preprotein translocase subunit SecA; Reviewed	100.0
TIGR00963		745	secA preprotein translocase, SecA subunit. The pro	100.0
PRK09200		790	preprotein translocase subunit SecA; Reviewed	100.0
TIGR03714		762	secA2 accessory Sec system translocase SecA2. Memb	100.0
PRK12898		656	secA preprotein translocase subunit SecA; Reviewed	100.0
PF07517		266	SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011	100.0
KOG0330\|consensus		476		100.0
KOG0331\|consensus		519		100.0
PF07516		214	SecA_SW: SecA Wing and Scaffold domain; InterPro:	100.0
KOG0333\|consensus		673		100.0
COG0513		513	SrmB Superfamily II DNA and RNA helicases [DNA rep	100.0
KOG0340\|consensus		442		100.0
KOG0338\|consensus		691		100.0
KOG0342\|consensus		543		100.0
KOG0336\|consensus		629		100.0
KOG0345\|consensus		567		100.0
KOG0343\|consensus		758		100.0
PTZ00110		545	helicase; Provisional	100.0
KOG0328\|consensus		400		100.0
KOG0347\|consensus		731		100.0
PRK04837		423	ATP-dependent RNA helicase RhlB; Provisional	100.0
PRK11634		629	ATP-dependent RNA helicase DeaD; Provisional	100.0
KOG0335\|consensus		482		100.0
KOG0341\|consensus		610		100.0
PRK10590		456	ATP-dependent RNA helicase RhlE; Provisional	100.0
PRK11776		460	ATP-dependent RNA helicase DbpA; Provisional	100.0
PLN00206		518	DEAD-box ATP-dependent RNA helicase; Provisional	100.0
PRK04537		572	ATP-dependent RNA helicase RhlB; Provisional	100.0
PRK11192		434	ATP-dependent RNA helicase SrmB; Provisional	100.0
KOG0339\|consensus		731		100.0
KOG0326\|consensus		459		100.0
KOG0334\|consensus		997		100.0
KOG0348\|consensus		708		100.0
PRK01297		475	ATP-dependent RNA helicase RhlB; Provisional	100.0
KOG0346\|consensus		569		100.0
KOG0332\|consensus		477		100.0
PTZ00424		401	helicase 45; Provisional	100.0
TIGR03817		742	DECH_helic helicase/secretion neighborhood putativ	100.0
KOG0327\|consensus		397		100.0
KOG0337\|consensus		529		100.0
KOG0350\|consensus		620		100.0
KOG4284\|consensus		980		100.0
TIGR00614		470	recQ_fam ATP-dependent DNA helicase, RecQ family.	100.0
KOG0344\|consensus		593		100.0
PRK11057		607	ATP-dependent DNA helicase RecQ; Provisional	100.0
PLN03137		1195	ATP-dependent DNA helicase; Q4-like; Provisional	100.0
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	99.97
TIGR00580		926	mfd transcription-repair coupling factor (mfd). Al	99.97
TIGR02621		844	cas3_GSU0051 CRISPR-associated helicase Cas3, Anae	99.97
PRK13767		876	ATP-dependent helicase; Provisional	99.97
TIGR01389		591	recQ ATP-dependent DNA helicase RecQ. The ATP-depe	99.97
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	99.97
PRK10689		1147	transcription-repair coupling factor; Provisional	99.97
KOG0329\|consensus		387		99.97
PRK02362		737	ski2-like helicase; Provisional	99.96
PRK14701		1638	reverse gyrase; Provisional	99.96
PHA02653		675	RNA helicase NPH-II; Provisional	99.96
PRK09401		1176	reverse gyrase; Reviewed	99.96
PRK00254		720	ski2-like helicase; Provisional	99.95
PRK01172		674	ski2-like helicase; Provisional	99.95
PHA02558		501	uvsW UvsW helicase; Provisional	99.94
PRK09751		1490	putative ATP-dependent helicase Lhr; Provisional	99.94
TIGR01054		1171	rgy reverse gyrase. Generally, these gyrases are e	99.93
TIGR01587		358	cas3_core CRISPR-associated helicase Cas3. This mo	99.93
PRK11664		812	ATP-dependent RNA helicase HrpB; Provisional	99.92
TIGR01970		819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	99.92
PRK13766		773	Hef nuclease; Provisional	99.92
PF01043		113	SecA_PP_bind: SecA preprotein cross-linking domain	99.92
COG1201		814	Lhr Lhr-like helicases [General function predictio	99.91
TIGR03158		357	cas3_cyano CRISPR-associated helicase, Cyano-type.	99.9
COG0514		590	RecQ Superfamily II DNA helicase [DNA replication,	99.89
PRK11131		1294	ATP-dependent RNA helicase HrpA; Provisional	99.88
COG1111		542	MPH1 ERCC4-like helicases [DNA replication, recomb	99.87
PRK05580		679	primosome assembly protein PriA; Validated	99.86
COG1202		830	Superfamily II helicase, archaea-specific [General	99.85
PRK04914		956	ATP-dependent helicase HepA; Validated	99.85
TIGR00603		732	rad25 DNA repair helicase rad25. All proteins in t	99.84
TIGR01967		1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.83
COG1205		851	Distinct helicase family with a unique C-terminal	99.82
TIGR00595		505	priA primosomal protein N'. All proteins in this f	99.81
PRK09694		878	helicase Cas3; Provisional	99.8
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	99.78
KOG0349\|consensus		725		99.75
KOG0352\|consensus		641		99.73
COG1204		766	Superfamily II helicase [General function predicti	99.73
PRK05298		652	excinuclease ABC subunit B; Provisional	99.72
TIGR00631		655	uvrb excinuclease ABC, B subunit. This family is b	99.71
PRK11448		1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	99.71
COG1061		442	SSL2 DNA or RNA helicases of superfamily II [Trans	99.7
KOG0351\|consensus		941		99.7
TIGR01407		850	dinG_rel DnaQ family exonuclease/DinG family helic	99.67
cd00268		203	DEADc DEAD-box helicases. A diverse family of prot	99.66
KOG0952\|consensus		1230		99.65
PF00270		169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	99.63
KOG0354\|consensus		746		99.57
PRK07246		820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.54
cd00079		131	HELICc Helicase superfamily c-terminal domain; ass	99.54
COG4098		441	comFA Superfamily II DNA/RNA helicase required for	99.53
COG1197		1139	Mfd Transcription-repair coupling factor (superfam	99.5
COG1110		1187	Reverse gyrase [DNA replication, recombination, an	99.35
COG1203		733	CRISPR-associated helicase Cas3 [Defense mechanism	99.35
PLN03142		1033	Probable chromatin-remodeling complex ATPase chain	99.35
KOG0353\|consensus		695		99.35
PRK08074		928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.25
KOG0951\|consensus		1674		99.21
COG1643		845	HrpA HrpA-like helicases [DNA replication, recombi	99.21
COG4581		1041	Superfamily II RNA helicase [DNA replication, reco	99.18
smart00487		201	DEXDc DEAD-like helicases superfamily.	99.17
PF00271		78	Helicase_C: Helicase conserved C-terminal domain;	99.14
COG0556		663	UvrB Helicase subunit of the DNA excision repair c	99.13
cd00046		144	DEXDc DEAD-like helicases superfamily. A diverse f	99.11
PRK11747		697	dinG ATP-dependent DNA helicase DinG; Provisional	99.07
TIGR03117		636	cas_csf4 CRISPR-associated DEAD/DEAH-box helicase	99.05
TIGR00348		667	hsdR type I site-specific deoxyribonuclease, HsdR	99.05
KOG0923\|consensus		902		98.98
KOG0922\|consensus		674		98.97
COG1198		730	PriA Primosomal protein N' (replication factor Y)	98.92
smart00490		82	HELICc helicase superfamily c-terminal domain.	98.88
KOG0948\|consensus		1041		98.88
KOG0950\|consensus		1008		98.85
COG4096		875	HsdR Type I site-specific restriction-modification	98.85
KOG0947\|consensus		1248		98.69
KOG0924\|consensus		1042		98.65
COG1199		654	DinG Rad3-related DNA helicases [Transcription / D	98.58
KOG0920\|consensus		924		98.57
PF04851		184	ResIII: Type III restriction enzyme, res subunit;	98.54
KOG0925\|consensus		699		98.48
PRK14873		665	primosome assembly protein PriA; Provisional	98.37
KOG0385\|consensus		971		98.34
KOG0949\|consensus		1330		98.19
KOG0387\|consensus		923		98.16
KOG0389\|consensus		941		98.04
KOG0926\|consensus		1172		98.0
KOG1123\|consensus		776		97.94
smart00489		289	DEXDc3 DEAD-like helicases superfamily.	97.79
smart00488		289	DEXDc2 DEAD-like helicases superfamily.	97.79
KOG0384\|consensus		1373		97.73
KOG1000\|consensus		689		97.58
KOG4150\|consensus		1034		97.39
KOG0392\|consensus		1549		97.37
COG0553		866	HepA Superfamily II DNA/RNA helicases, SNF2 family	97.31
PF07652		148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	97.26
PF06862		442	DUF1253: Protein of unknown function (DUF1253); In	97.2
KOG0390\|consensus		776		97.03
KOG0953\|consensus		700		96.98
PF00176		299	SNF2_N: SNF2 family N-terminal domain; InterPro: I	96.79
PF02399		824	Herpes_ori_bp: Origin of replication binding prote	96.6
PF13086		236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.45
KOG0951\|consensus		1674		96.33
TIGR01073		726	pcrA ATP-dependent DNA helicase PcrA. Designed to	96.02
TIGR01425		429	SRP54_euk signal recognition particle protein SRP5	95.99
TIGR01075		715	uvrD DNA helicase II. Designed to identify uvrD me	95.93
PF09848		352	DUF2075: Uncharacterized conserved protein (DUF207	95.89
PRK11773		721	uvrD DNA-dependent helicase II; Provisional	95.84
KOG0386\|consensus		1157		95.7
TIGR00596		814	rad1 DNA repair protein (rad1). This family is bas	95.69
TIGR00376		637	DNA helicase, putative. The gene product may repre	95.64
KOG0349\|consensus		725		95.49
PRK10416		318	signal recognition particle-docking protein FtsY;	95.33
PRK12723		388	flagellar biosynthesis regulator FlhF; Provisional	95.3
COG0610		962	Type I site-specific restriction-modification syst	95.27
PF13245		76	AAA_19: Part of AAA domain	95.2
PF00580		315	UvrD-helicase: UvrD/REP helicase N-terminal domain	95.17
KOG1803\|consensus		649		95.13
TIGR00064		272	ftsY signal recognition particle-docking protein F	95.05
TIGR00959		428	ffh signal recognition particle protein. This mode	95.02
PRK10536		262	hypothetical protein; Provisional	94.94
TIGR03499		282	FlhF flagellar biosynthetic protein FlhF.	94.91
PRK10867		433	signal recognition particle protein; Provisional	94.86
PRK12726		407	flagellar biosynthesis regulator FlhF; Provisional	94.85
PF13604		196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	94.84
KOG1802\|consensus		935		94.71
PF12340		229	DUF3638: Protein of unknown function (DUF3638); In	94.68
PRK00771		437	signal recognition particle protein Srp54; Provisi	94.59
PRK05703		424	flhF flagellar biosynthesis regulator FlhF; Valida	94.55
PF13401		131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	94.48
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	94.38
KOG1805\|consensus		1100		94.37
KOG2340\|consensus		698		94.36
PRK15483		986	type III restriction-modification system StyLTI en	94.12
PRK14974		336	cell division protein FtsY; Provisional	93.56
PF02562		205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	93.52
PRK14722		374	flhF flagellar biosynthesis regulator FlhF; Provis	93.39
PRK12724		432	flagellar biosynthesis regulator FlhF; Provisional	93.1
TIGR01447		586	recD exodeoxyribonuclease V, alpha subunit. This f	92.4
PRK10875		615	recD exonuclease V subunit alpha; Provisional	92.04
PRK10919		672	ATP-dependent DNA helicase Rep; Provisional	91.99
COG3587		985	Restriction endonuclease [Defense mechanisms]	91.92
KOG0952\|consensus		1230		91.9
COG4889		1518	Predicted helicase [General function prediction on	90.61
cd01124		187	KaiC KaiC is a circadian clock protein primarily f	90.6
COG1474		366	CDC6 Cdc6-related protein, AAA superfamily ATPase	90.42
TIGR01547		396	phage_term_2 phage terminase, large subunit, PBSX	89.72
KOG1133\|consensus		821		89.64
PRK11889		436	flhF flagellar biosynthesis regulator FlhF; Provis	89.5
COG1875		436	NYN ribonuclease and ATPase of PhoH family domains	89.43
PRK04296		190	thymidine kinase; Provisional	89.26
PF00448		196	SRP54: SRP54-type protein, GTPase domain; InterPro	88.9
smart00382		148	AAA ATPases associated with a variety of cellular	88.77
TIGR03600		421	phage_DnaB phage replicative helicase, DnaB family	88.68
TIGR00665		434	DnaB replicative DNA helicase. This model describe	88.66
cd00009		151	AAA The AAA+ (ATPases Associated with a wide varie	88.54
TIGR01074		664	rep ATP-dependent DNA helicase Rep. Designed to id	88.5
PRK06995		484	flhF flagellar biosynthesis regulator FlhF; Valida	88.46
TIGR01448		720	recD_rel helicase, putative, RecD/TraA family. Thi	88.12
cd03115		173	SRP The signal recognition particle (SRP) mediates	87.91
PRK14723		767	flhF flagellar biosynthesis regulator FlhF; Provis	87.78
KOG0388\|consensus		1185		87.75
cd01120		165	RecA-like_NTPases RecA-like NTPases. This family i	87.6
KOG0989\|consensus		346		87.56
PRK11054		684	helD DNA helicase IV; Provisional	87.13
TIGR02785		1232	addA_Gpos recombination helicase AddA, Firmicutes	86.63
TIGR02768		744	TraA_Ti Ti-type conjugative transfer relaxase TraA	86.42
cd01122		271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	85.88
KOG0391\|consensus		1958		85.74
KOG1002\|consensus		791		85.62
COG3421		812	Uncharacterized protein conserved in bacteria [Fun	85.36
COG0552		340	FtsY Signal recognition particle GTPase [Intracell	84.9
COG1419		407	FlhF Flagellar GTP-binding protein [Cell motility	84.64
PF14617		252	CMS1: U3-containing 90S pre-ribosomal complex subu	83.96
PRK12727		559	flagellar biosynthesis regulator FlhF; Provisional	83.72
COG3972		660	Superfamily I DNA and RNA helicases [General funct	83.7
PRK14721		420	flhF flagellar biosynthesis regulator FlhF; Provis	83.62
TIGR00604		705	rad3 DNA repair helicase (rad3). All proteins in t	83.34
PF06745		226	KaiC: KaiC; InterPro: IPR014774 This entry represe	83.05
PRK05748		448	replicative DNA helicase; Provisional	82.81
PRK06067		234	flagellar accessory protein FlaH; Validated	82.14
cd00984		242	DnaB_C DnaB helicase C terminal domain. The hexame	81.56
COG3973		747	Superfamily I DNA and RNA helicases [General funct	80.85
TIGR03877		237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	80.46

>PRK12902 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

Probab=100.00  E-value=1.6e-220  Score=1901.39  Aligned_cols=800  Identities=47%  Similarity=0.749  Sum_probs=750.4

Q ss_pred             hhHhhCCcchhHhHHHHHHHHHHHhhHHHHhcCChHHHHHHHHHHHHhcccCCC-------cchhhHHHHHHHHHHHHHH
Q psy2371           4 LTKIFGSRNQRLLKKYQKIVQKINELESVMQKLSDEELQNQTSKLKQSIHSGET-------LDSILPKAFSVCREASKRV   76 (816)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lsd~~l~~~~~~~~~~~~~g~~-------ld~~l~ea~a~vrea~~R~   76 (816)
                      ++++||++++|.+++|+++|++||+++++|++|||++|+++|.+||.|+++|++       +|+++|||||+||||++|+
T Consensus         2 ~~kl~~~~~~r~l~~~~~~~~~i~~~e~~~~~lsd~eL~~~t~~~k~rl~~g~~~~~~~~~ld~~l~eafA~vREa~~R~   81 (939)
T PRK12902          2 LKLLLGDPNARKLKKYQPIVTEINLLEEEIAPLSDDELRAKTAEFRQRLDKAESDEEQREILDELLPEAFAVVREASKRV   81 (939)
T ss_pred             hhHhhCCccHhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999999999999       9999999999999999999


Q ss_pred             hccccchhhhhhhccccCCceeeecCCCCchHHHHHHHHHHHhcCCcEEEEeCcHHHHHHHHHHHHHHhhhcCCeEEEec
Q psy2371          77 LKMRHFDVQLIGGIALHYGNISEMQTGEGKTLVATLAAYLNSLSGQGVHIVTISDYLAKRDAEWMSVLYNWLGLSIGVNS  156 (816)
Q Consensus        77 lg~~p~~VQ~~~~~~L~~G~Iaem~TGEGKTL~~~Lpa~l~aL~g~~V~VvT~n~yLA~Rd~e~~~~l~~~lglsv~~i~  156 (816)
                      +||+|||||++|+++||+|+||||+|||||||+++||+|+|||+|+||||||+|+|||+||++||+|+|++||||||++.
T Consensus        82 lG~r~ydVQliGgl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~  161 (939)
T PRK12902         82 LGMRHFDVQLIGGMVLHEGQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQ  161 (939)
T ss_pred             hCCCcchhHHHhhhhhcCCceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCCCEEEECCCcchhhhhhhhhccCCCccccccceEEEecchhhhhhhccCCcceeccccccchhhhHH
Q psy2371         157 SEISHSLKKKSYEADITYGTNNEFGFDYLRDNMVFNSNDRVQRKLNFVILDEIDSILIDEARTPLIISGEIKNNAQYFYK  236 (816)
Q Consensus       157 ~~~~~~~r~~~y~~dI~ygT~~~l~fDyLrD~~~~~~~~~~~r~~~~~IvDEaDs~LiDea~tpliisg~~~~~~~~y~~  236 (816)
                      +++++++|+.+|+||||||||++||||||||||+.+.+.+++|+++||||||||||||||||||||||||...+...|. 
T Consensus       162 ~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~-  240 (939)
T PRK12902        162 QDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQ-  240 (939)
T ss_pred             CCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCCCccchHHHH-
Confidence            9999999999999999999999999999999999988899999999999999999999999999999999988888998 


Q ss_pred             HHhhHhhhccchhhhhhhhhhcccccCCCCCeEEeCCCcEEEechhhHHHHHHHHH---------------HHHHHHHHH
Q psy2371         237 IINPIPKLLVPEIDTKNIKKNIKYTKKNTGDYIIDYETNQVFLTENGYEKYENILI---------------KMALRAHVL  301 (816)
Q Consensus       237 ~i~~iv~~L~~~~~~~~~~~~~~~~~~~~~~y~vd~~~~~v~lt~~g~~~~e~~l~---------------~~Al~A~~l  301 (816)
                      .++++++.|.+..           ....+.||.+|++.+++.||+.|..++|++++               .+||+|+++
T Consensus       241 ~~~~~~~~L~~~~-----------~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~l  309 (939)
T PRK12902        241 KAAEVAAALQRKD-----------GIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKEL  309 (939)
T ss_pred             HHHHHHHHhhhhc-----------ccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHH
Confidence            9999999986411           11224599999999999999999999998754               899999999


Q ss_pred             hccCcceEEeCCeEEEeecccccccccccchhhhhHHHhccccceeccCccccccchhhhHHhhhcchhcccccccchHH
Q psy2371         302 YHKNKHYIIKNNKIIIVDEFTGRLMKTRRWAEGLHQALEAKENLEIQNETQTLASITFQNYFRMYKKISGMTGTAETEAY  381 (816)
Q Consensus       302 ~~~~~dYiV~d~~v~ivD~~tGr~~~grr~s~GLhQaieaKe~v~i~~e~~tla~It~q~~f~~Y~~l~GmTGTa~te~~  381 (816)
                      |++|+||||+||+|+|||+||||+|+||+||+||||||||||||+|+++++|+|+|||||||++|++|+||||||+++++
T Consensus       310 f~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~  389 (939)
T PRK12902        310 FIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEV  389 (939)
T ss_pred             HhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCeEEEcCCCCccccccCcCeEecChHHHHHHHHHHHHhhccCCCcEEEEEcccHhHHHHHHHHHhCCCCeEEE
Q psy2371         382 EFQEIYKLETITVPPNKINKRKDLQDKIYKTMEEKYQAILMDIKNCYIKEQPVLVGTTSIENSELLSNILKKNNLPHSVL  461 (816)
Q Consensus       382 e~~~~Y~l~vv~IPt~~p~~r~d~~d~v~~t~~~K~~ai~~~i~~~~~~grpVLVft~si~~se~Ls~~L~~~gi~~~vL  461 (816)
                      ||.++||++|+.||||+|++|+|+||.||.|..+||.||+++|.++|++||||||||.|++.||.||.+|.+.||||+||
T Consensus       390 Ef~~iY~l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL  469 (939)
T PRK12902        390 EFEKTYKLEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL  469 (939)
T ss_pred             HHHHHhCCcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCC--chHHHHHHHHHcCCCccEEEecCccccCccccCCCCchhhHH-Hhhh---------cch----h-----------
Q psy2371         462 NAK--QHKLEAQIIAQAGHPKMITIATNMAGRGTDIILGGNIDSYIK-DIKK---------NIS----S-----------  514 (816)
Q Consensus       462 nak--~~~rEa~ii~~Ag~~g~VtIATnmAGRGtDI~l~g~~~~~~~-~~~~---------~~~----~-----------  514 (816)
                      ||+  ++++||+||++||++|+||||||||||||||+|||||+++++ +++.         .+.    .           
T Consensus       470 NAk~~~~~~EA~IIa~AG~~GaVTIATNMAGRGTDIkLgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  549 (939)
T PRK12902        470 NAKPENVEREAEIVAQAGRKGAVTIATNMAGRGTDIILGGNSDYMARLKLREYLMPRLVKPEDDHKPPVPLQRGLKGGQG  549 (939)
T ss_pred             eCCCcchHhHHHHHHhcCCCCcEEEeccCCCCCcCEeeCCchhhhhhHHhhhhccccccccccccccccccccccccccc
Confidence            998  779999999999999999999999999999999999999875 2220         000    0           


Q ss_pred             -----------------------------------------h----------------------H-----------HHHH
Q psy2371         515 -----------------------------------------E----------------------V-----------KKKN  520 (816)
Q Consensus       515 -----------------------------------------~----------------------~-----------~~~~  520 (816)
                                                               .                      +           .+..
T Consensus       550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  629 (939)
T PRK12902        550 FGPKAKKPKKTWKASSASIFPCELSEETEQLLKEAVDFAVKQYGDRSLPELELEDKIATAAEKAPTDDPVIQKLREAYNR  629 (939)
T ss_pred             cccccccccccccccccccccccccchhhhhhhhhhhhhhhhhcccccccccchhhhhhhhhcccccchhhhhHHHHHHH
Confidence                                                     0                      0           0123


Q ss_pred             HHHHHHHHHHhhhhhhhccCceEEEEecCCCCcchhhhhcCccCCCCCCceEEEEeccchhhhhhcChHHHHHHHHHcCC
Q psy2371         521 KIKKLKNEWMLLHDKVISSGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLDDSLLKFFSSDQIKIVMEKLKI  600 (816)
Q Consensus       521 ~~~~~~~~~~~~~~~V~~~GGLhVI~te~pes~rid~Q~~GRtGRqGdpG~s~~~lsleD~l~~~~~~~~~~~~~~~~~~  600 (816)
                      .+..++..|.+++++|.++||||||||+||+|+|+|||+|||||||||||+|+||||+||+||++||++++.++|+++++
T Consensus       630 ~~~~~~~~~~~e~~~V~elGGL~VIGTERHESRRIDNQLRGRaGRQGDPGsSrFflSLEDdL~r~Fg~dri~~~~~~l~~  709 (939)
T PRK12902        630 IKKEYEVVTSQEHDEVVEAGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFLSLEDNLLRIFGGDRVAGLMNAFRV  709 (939)
T ss_pred             HHHHHHHHhhhhhhhHHHcCCCeEEecCccccchHHHHhhcccccCCCCCcceEEEEechHHHHHhCcHHHHHHHHHcCC
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccHHHHHHHHHHHHHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhhc
Q psy2371         601 PKGKSIESNLASYSIESAQRKIELRNFDIRKQLLEYDDIYNNQRKIICQERNKLLESKNISEIIKILRYDVLIRLFSKYI  680 (816)
Q Consensus       601 ~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~rk~~~~~d~~~~~QR~~iy~~R~~il~~~~~~~~~~~~~~~~~~~~v~~~~  680 (816)
                      ++++||++++++++|++||+++|++||++||++++||+|||.||++||++|++||+++++.+.+..|++++|+++|+.|+
T Consensus       710 ~e~~~I~~~~i~k~ie~AQkkvE~~nf~iRK~ll~YD~Vln~QR~~IY~~R~~iL~~~~~~~~i~~~~~~~i~~~v~~~~  789 (939)
T PRK12902        710 EEDMPIESGMLTRSLEGAQKKVETYYYDIRKQVFEYDEVMNNQRRAIYAERRRVLEGRDLKEQVIGYGEKTMDEIVEAYV  789 (939)
T ss_pred             CCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCCCCCccccHHHHHHHHHHhcCCCchhHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHH
Q psy2371         681 SLKKSDKEWDIIGLELILKKEFKLDISFKIFFKKKYTIKDFFIKILYTFDKKYENKIKIL---NNKKFLNFERNIILQSI  757 (816)
Q Consensus       681 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~r~~~L~~i  757 (816)
                      +++..+++|++++|...+...+....++........+.++++++|.+.+...|+.|++.+   +++.++++||.++|++|
T Consensus       790 ~~~~~~~~w~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~y~~K~~~l~~~~~~~~~~~eR~i~L~~i  869 (939)
T PRK12902        790 NPDLPPEEWDLDQLVSKVKEFVYLLEDLKPEDLEDLSVEELKAFLHEQLRIAYDLKEAQIDQIRPGLMREAERFFILQQI  869 (939)
T ss_pred             CCccChhhccHHHHHHHHHHHhcChhhcChHhhccCCHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            776677899999999998864321111111111112458999999999999999999999   78899999999999999


Q ss_pred             hHHHHHHHHHHHHHHhhhccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2371         758 DKYWIEHLLSLDQLRQGINLRSYAQKDPKREYKREAFKLFHKMLNLIKYEAIKKIMTI  815 (816)
Q Consensus       758 D~~W~ehl~~m~~Lr~~I~lr~y~QkdPl~ey~~ea~~~F~~m~~~i~~~~~~~l~~~  815 (816)
                      |..|++||++|++||++||||||||+||+.|||+|||++|+.|+.+|+.++++.+|++
T Consensus       870 D~~W~eHL~~md~Lre~I~lR~ygQkdPl~EYk~Ea~~~F~~m~~~ir~~vv~~l~~~  927 (939)
T PRK12902        870 DTLWREHLQSMDALRESVGLRGYGQKDPLIEYKNEGYEMFLEMMTNIRRNVVYSLFMF  927 (939)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhe
Confidence            9999999999999999999999999999999999999999999999999999999874

>PRK12901 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12903 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13103 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13107 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK13104 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>CHL00122 secA preprotein translocase subunit SecA; Validated	Back alignment and domain information

>PRK12904 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12900 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12906 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PRK12326 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK12899 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR00963 secA preprotein translocase, SecA subunit	Back alignment and domain information

>PRK09200 preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>TIGR03714 secA2 accessory Sec system translocase SecA2	Back alignment and domain information

>PRK12898 secA preprotein translocase subunit SecA; Reviewed	Back alignment and domain information

>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>KOG0330\|consensus	Back alignment and domain information

>KOG0331\|consensus	Back alignment and domain information

>PF07516 SecA_SW: SecA Wing and Scaffold domain; InterPro: IPR011116 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane	Back alignment and domain information

>KOG0333\|consensus	Back alignment and domain information

>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>KOG0340\|consensus	Back alignment and domain information

>KOG0338\|consensus	Back alignment and domain information

>KOG0342\|consensus	Back alignment and domain information

>KOG0336\|consensus	Back alignment and domain information

>KOG0345\|consensus	Back alignment and domain information

>KOG0343\|consensus	Back alignment and domain information

>PTZ00110 helicase; Provisional	Back alignment and domain information

>KOG0328\|consensus	Back alignment and domain information

>KOG0347\|consensus	Back alignment and domain information

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional	Back alignment and domain information

>KOG0335\|consensus	Back alignment and domain information

>KOG0341\|consensus	Back alignment and domain information

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional	Back alignment and domain information

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional	Back alignment and domain information

>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional	Back alignment and domain information

>PRK04537 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional	Back alignment and domain information

>KOG0339\|consensus	Back alignment and domain information

>KOG0326\|consensus	Back alignment and domain information

>KOG0334\|consensus	Back alignment and domain information

>KOG0348\|consensus	Back alignment and domain information

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional	Back alignment and domain information

>KOG0346\|consensus	Back alignment and domain information

>KOG0332\|consensus	Back alignment and domain information

>PTZ00424 helicase 45; Provisional	Back alignment and domain information

>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase	Back alignment and domain information

>KOG0327\|consensus	Back alignment and domain information

>KOG0337\|consensus	Back alignment and domain information

>KOG0350\|consensus	Back alignment and domain information

>KOG4284\|consensus	Back alignment and domain information

>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family	Back alignment and domain information

>KOG0344\|consensus	Back alignment and domain information

>PRK11057 ATP-dependent DNA helicase RecQ; Provisional	Back alignment and domain information

>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>TIGR00580 mfd transcription-repair coupling factor (mfd)	Back alignment and domain information

>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype	Back alignment and domain information

>PRK13767 ATP-dependent helicase; Provisional	Back alignment and domain information

>TIGR01389 recQ ATP-dependent DNA helicase RecQ	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>PRK10689 transcription-repair coupling factor; Provisional	Back alignment and domain information

>KOG0329\|consensus	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK14701 reverse gyrase; Provisional	Back alignment and domain information

>PHA02653 RNA helicase NPH-II; Provisional	Back alignment and domain information

>PRK09401 reverse gyrase; Reviewed	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PHA02558 uvsW UvsW helicase; Provisional	Back alignment and domain information

>PRK09751 putative ATP-dependent helicase Lhr; Provisional	Back alignment and domain information

>TIGR01054 rgy reverse gyrase	Back alignment and domain information

>TIGR01587 cas3_core CRISPR-associated helicase Cas3	Back alignment and domain information

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional	Back alignment and domain information

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB	Back alignment and domain information

>PRK13766 Hef nuclease; Provisional	Back alignment and domain information

>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane	Back alignment and domain information

>COG1201 Lhr Lhr-like helicases [General function prediction only]	Back alignment and domain information

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type	Back alignment and domain information

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional	Back alignment and domain information

>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05580 primosome assembly protein PriA; Validated	Back alignment and domain information

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]	Back alignment and domain information

>PRK04914 ATP-dependent helicase HepA; Validated	Back alignment and domain information

>TIGR00603 rad25 DNA repair helicase rad25	Back alignment and domain information

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA	Back alignment and domain information

>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]	Back alignment and domain information

>TIGR00595 priA primosomal protein N'	Back alignment and domain information

>PRK09694 helicase Cas3; Provisional	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>KOG0349\|consensus	Back alignment and domain information

>KOG0352\|consensus	Back alignment and domain information

>COG1204 Superfamily II helicase [General function prediction only]	Back alignment and domain information

>PRK05298 excinuclease ABC subunit B; Provisional	Back alignment and domain information

>TIGR00631 uvrb excinuclease ABC, B subunit	Back alignment and domain information

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional	Back alignment and domain information

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0351\|consensus	Back alignment and domain information

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative	Back alignment and domain information

>cd00268 DEADc DEAD-box helicases	Back alignment and domain information

>KOG0952\|consensus	Back alignment and domain information

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases	Back alignment and domain information

>KOG0354\|consensus	Back alignment and domain information

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process

Back alignment and domain information

>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>COG1110 Reverse gyrase [DNA replication, recombination, and repair]	Back alignment and domain information

>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]	Back alignment and domain information

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional	Back alignment and domain information

>KOG0353\|consensus	Back alignment and domain information

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated	Back alignment and domain information

>KOG0951\|consensus	Back alignment and domain information

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]	Back alignment and domain information

>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00487 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins	Back alignment and domain information

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]	Back alignment and domain information

>cd00046 DEXDc DEAD-like helicases superfamily	Back alignment and domain information

>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional	Back alignment and domain information

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4	Back alignment and domain information

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family	Back alignment and domain information

>KOG0923\|consensus	Back alignment and domain information

>KOG0922\|consensus	Back alignment and domain information

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]	Back alignment and domain information

>smart00490 HELICc helicase superfamily c-terminal domain	Back alignment and domain information

>KOG0948\|consensus	Back alignment and domain information

>KOG0950\|consensus	Back alignment and domain information

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>KOG0947\|consensus	Back alignment and domain information

>KOG0924\|consensus	Back alignment and domain information

>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>KOG0920\|consensus	Back alignment and domain information

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3	Back alignment and domain information

>KOG0925\|consensus	Back alignment and domain information

>PRK14873 primosome assembly protein PriA; Provisional	Back alignment and domain information

>KOG0385\|consensus	Back alignment and domain information

>KOG0949\|consensus	Back alignment and domain information

>KOG0387\|consensus	Back alignment and domain information

>KOG0389\|consensus	Back alignment and domain information

>KOG0926\|consensus	Back alignment and domain information

>KOG1123\|consensus	Back alignment and domain information

>smart00489 DEXDc3 DEAD-like helicases superfamily	Back alignment and domain information

>smart00488 DEXDc2 DEAD-like helicases superfamily	Back alignment and domain information

>KOG0384\|consensus	Back alignment and domain information

>KOG1000\|consensus	Back alignment and domain information

>KOG4150\|consensus	Back alignment and domain information

>KOG0392\|consensus	Back alignment and domain information

>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	Back alignment and domain information

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain	Back alignment and domain information

>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ]	Back alignment and domain information

>KOG0390\|consensus	Back alignment and domain information

>KOG0953\|consensus	Back alignment and domain information

>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e	Back alignment and domain information

>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein	Back alignment and domain information

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A	Back alignment and domain information

>KOG0951\|consensus	Back alignment and domain information

>TIGR01073 pcrA ATP-dependent DNA helicase PcrA	Back alignment and domain information

>TIGR01425 SRP54_euk signal recognition particle protein SRP54	Back alignment and domain information

>TIGR01075 uvrD DNA helicase II	Back alignment and domain information

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function	Back alignment and domain information

>PRK11773 uvrD DNA-dependent helicase II; Provisional	Back alignment and domain information

>KOG0386\|consensus	Back alignment and domain information

>TIGR00596 rad1 DNA repair protein (rad1)	Back alignment and domain information

>TIGR00376 DNA helicase, putative	Back alignment and domain information

>KOG0349\|consensus	Back alignment and domain information

>PRK10416 signal recognition particle-docking protein FtsY; Provisional	Back alignment and domain information

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	Back alignment and domain information

>PF13245 AAA_19: Part of AAA domain	Back alignment and domain information

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA	Back alignment and domain information

>KOG1803\|consensus	Back alignment and domain information

>TIGR00064 ftsY signal recognition particle-docking protein FtsY	Back alignment and domain information

>TIGR00959 ffh signal recognition particle protein	Back alignment and domain information

>PRK10536 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03499 FlhF flagellar biosynthetic protein FlhF	Back alignment and domain information

>PRK10867 signal recognition particle protein; Provisional	Back alignment and domain information

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A	Back alignment and domain information

>KOG1802\|consensus	Back alignment and domain information

>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length	Back alignment and domain information

>PRK00771 signal recognition particle protein Srp54; Provisional	Back alignment and domain information

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>KOG1805\|consensus	Back alignment and domain information

>KOG2340\|consensus	Back alignment and domain information

>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional	Back alignment and domain information

>PRK14974 cell division protein FtsY; Provisional	Back alignment and domain information

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []	Back alignment and domain information

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit	Back alignment and domain information

>PRK10875 recD exonuclease V subunit alpha; Provisional	Back alignment and domain information

>PRK10919 ATP-dependent DNA helicase Rep; Provisional	Back alignment and domain information

>COG3587 Restriction endonuclease [Defense mechanisms]	Back alignment and domain information

>KOG0952\|consensus	Back alignment and domain information

>COG4889 Predicted helicase [General function prediction only]	Back alignment and domain information

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs	Back alignment and domain information

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family	Back alignment and domain information

>KOG1133\|consensus	Back alignment and domain information

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]	Back alignment and domain information

>PRK04296 thymidine kinase; Provisional	Back alignment and domain information

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]	Back alignment and domain information

>smart00382 AAA ATPases associated with a variety of cellular activities	Back alignment and domain information

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily	Back alignment and domain information

>TIGR00665 DnaB replicative DNA helicase	Back alignment and domain information

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold	Back alignment and domain information

>TIGR01074 rep ATP-dependent DNA helicase Rep	Back alignment and domain information

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated	Back alignment and domain information

>TIGR01448 recD_rel helicase, putative, RecD/TraA family	Back alignment and domain information

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes	Back alignment and domain information

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>KOG0388\|consensus	Back alignment and domain information

>cd01120 RecA-like_NTPases RecA-like NTPases	Back alignment and domain information

>KOG0989\|consensus	Back alignment and domain information

>PRK11054 helD DNA helicase IV; Provisional	Back alignment and domain information

>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type	Back alignment and domain information

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA	Back alignment and domain information

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases	Back alignment and domain information

>KOG0391\|consensus	Back alignment and domain information

>KOG1002\|consensus	Back alignment and domain information

>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]	Back alignment and domain information

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]	Back alignment and domain information

>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit	Back alignment and domain information

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]	Back alignment and domain information

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional	Back alignment and domain information

>TIGR00604 rad3 DNA repair helicase (rad3)	Back alignment and domain information

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical	Back alignment and domain information

>PRK05748 replicative DNA helicase; Provisional	Back alignment and domain information

>PRK06067 flagellar accessory protein FlaH; Validated	Back alignment and domain information

>cd00984 DnaB_C DnaB helicase C terminal domain	Back alignment and domain information

>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]	Back alignment and domain information

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		816
2fsf_A		853	Escherichia Coli Seca, The Preprotein Translocase D		0.0
2vda_A		828	Solution Structure Of The Seca-Signal Peptide Compl		0.0
2fsg_A		853	Complex Seca:atp From Escherichia Coli Length = 853		0.0
3dl8_A		779	Structure Of The Complex Of Aquifex Aeolicus Secyeg		1e-176
2ibm_A		780	A Novel Dimer Interface And Conformational Changes		1e-176
3jv2_A		783	Crystal Structure Of B. Subtilis Seca With Bound Pe		1e-176
3iqm_A		802	Active Site Mutants Of B. Subtilis Seca Length = 80		1e-176
1m6n_A		802	Crystal Structure Of The Seca Translocation Atpase		1e-176
1tf2_A		844	Crystal Structure Of Seca:adp In An Open Conformati		1e-175
3iqy_A		841	Active Site Mutants Of B. Subtilis Seca Length = 84		1e-175
1nkt_A		922	Crystal Structure Of The Seca Protein Translocation		1e-156
1nkt_A		922	Crystal Structure Of The Seca Protein Translocation		3e-11
3jux_A		822	Structure Of The Translocation Atpase Seca From The		1e-155
3din_A		871	Crystal Structure Of The Protein-Translocation Comp		1e-155
2ipc_A		997	Crystal Structure Of The Translocation Atpase Seca		1e-107
2ipc_A		997	Crystal Structure Of The Translocation Atpase Seca		4e-41
3bxz_A		471	Crystal Structure Of The Isolated Dead Motor Domain		1e-73

>pdb|2FSF|A Chain A, Escherichia Coli Seca, The Preprotein Translocase Dimeric Atpase Length = 853