Psyllid ID: psy2372

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------
Protein Sequence
MSFNLNLGPKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILNDK
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccEEEEEccccHHHHHHHHHHccccEEEEEccccccEEEEEEHHHHHHHHHHccccccccHHHcccccEEEcccccHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHccccccccccEEEEEccEEEEEccccHHHHHHHHccccccccccccccccHHHHHHHHHccccccccEEEEccEEEEEEEEEccEEcEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHccccccHHHHccccccEEEEEccccHHHHHHHHHHccccccEEEccccccEEEEEEHHHHHHHHHcccccccccHHHHcccccEccccccHHHHHHHHHHcccEEEEEEEcccccccEEEHHHHHHHHHccccccccHHHEEcccccEEEccEEcHHHHHHHccccccccccccccccEEHHHHHHHcccccccccEEEEccEEEEEEEccccEEEEEEEEEcccc
Coil and Loop (DISEMBL)
msfnlnlgpkyLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALIlsenpihffsTVQIGITLISIFngafgesslvasltpkIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIkykkndliTEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITlmtprmkvnfiniDDNIEKNLIKILDssynyfpvYKKSISKIIGTLNTKTLFKKIISNRsivniditsaiqpplfipetISTMQLLETFKKNKSELSLVIDeygelegiiTINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLsnqvnfpvkisRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILNDK
Flexible Loop (DISEMBL)
msfnlnlgpKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIkykkndliTEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILNDK
Low Complexity Region (SEG)
MSFNLNLGPKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILNDK
Disordered region (IsUnstruct)
****LNLGPKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTIL***
Disordered Region (DISOPRED)
***N***GPKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKR**************LSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIF**************IYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTIL***
Disordered Region (DISEMBL)
MSFNLNLGPKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILNDK
Disordered Region (DISPRO)
*SFNLNLGPKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTIL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFNLNLGPKYLKLHMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILNDK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	447	2.2.26 [Sep-21-2011]
P74409	448	UPF0053 protein sll0260 O	N/A	N/A	0.917	0.915	0.362	9e-80
P0AE45	447	UPF0053 inner membrane pr	N/A	N/A	0.919	0.919	0.307	5e-52
P0AE46	447	UPF0053 inner membrane pr	yes	N/A	0.919	0.919	0.307	5e-52
P0AE47	447	UPF0053 inner membrane pr	N/A	N/A	0.919	0.919	0.307	5e-52
P44717	432	UPF0053 protein HI_0452 O	yes	N/A	0.944	0.976	0.261	6e-45
O05241	429	UPF0053 protein YugS OS=B	yes	N/A	0.859	0.895	0.253	6e-39
O07589	461	UPF0053 protein YhdT OS=B	no	N/A	0.836	0.811	0.276	2e-37
O07585	444	UPF0053 protein YhdP OS=B	no	N/A	0.843	0.849	0.265	2e-35
P54428	434	UPF0053 protein YrkA OS=B	no	N/A	0.841	0.866	0.260	1e-33
P54505	442	UPF0053 protein YqhB OS=B	no	N/A	0.740	0.748	0.283	4e-32

>sp|P74409|Y260_SYNY3 UPF0053 protein sll0260 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0260 PE=3 SV=1

 Score =  297 bits (761), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 155/427 (36%), Positives = 262/427 (61%), Gaps = 17/427 (3%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           L+ LNGIFS SEIAI+++++VRL++L ++G+  A  AL L+  P +F S VQIGITLI I
Sbjct: 16  LVVLNGIFSGSEIAIVSARKVRLEQLAKRGNRKAKLALKLATAPNNFLSAVQIGITLIGI 75

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
             GA G +++   L   +    L+  +A  +S+ ++V  IT+ SL+ GEL+PKRIA+ + 
Sbjct: 76  LTGAVGGATVALRLAEFLDDIPLLAPYAGPLSISLLVGFITYLSLVVGELVPKRIALSHP 135

Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFD 205
           E  A  ++P M  + +L  P V +L +ST+++L +F I  K+   ITEEEI  +  +G  
Sbjct: 136 EHIACGVAPAMHLVAQLTAPLVYLLGVSTDAVLRLFGITSKEASPITEEEIRVMIEQGAQ 195

Query: 206 IGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVY 265
            G+ ++ E  +  R  +L D+   TLMTPR  + +++++ + E+N  +ILD+ Y+ FPV 
Sbjct: 196 AGMIDEAEQEMVERVFRLGDRPVKTLMTPRTAIAWLDVESDWEENQQEILDTPYSRFPVG 255

Query: 266 KKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSE 325
           + S+ + +G +  K +     S +    I++   +QPPLF+ E   ++ +LE F+ + + 
Sbjct: 256 RDSLDECLGFVRVKDILNSQWSGQ---KINLEEIVQPPLFVAENTRSLHVLEMFRASGTH 312

Query: 326 LSLVIDEYGELEGIITINDIIHSLIGDISNS---YQEEIEFCEDGSWIISASMTFDRFKE 382
           L+L+ DEYG +EG++T+ND+I +++G I N     + +I   EDGS+++   +  D FKE
Sbjct: 313 LALITDEYGGIEGLVTLNDLIEAIVGSIPNDDEIQEPQIIQREDGSYLLDGLLPIDEFKE 372

Query: 383 L-----LSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIE 437
           +     LSN+         +YHTL GFV+  LG IP+  + F+   +++EV+DM+  +I+
Sbjct: 373 IFDIETLSNEEE------GHYHTLGGFVIESLGKIPQSGDYFVSDTLRVEVVDMDGIRID 426

Query: 438 RLLVTIL 444
           ++LV  L
Sbjct: 427 KVLVNQL 433

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|P0AE45|YTFL_ECOLI UPF0053 inner membrane protein YtfL OS=Escherichia coli (strain K12) GN=ytfL PE=1 SV=1

 Score =  205 bits (522), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 236/429 (55%), Gaps = 18/429 (4%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           LI ++  FSMSEI++  S++++LK L ++G+I A   L + ENP  FF+ VQIG+  ++I
Sbjct: 11  LIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAI 70

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDH-----AHEISLVIVVFSITFFSLIFGELIPKRI 140
             G  G+    A+ +P   F SL   +     + ++S ++    +T   ++F +L PKRI
Sbjct: 71  LGGIVGD----AAFSPA--FHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLTPKRI 124

Query: 141 AMQYSEKAA-SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKL 199
            M   E  A  II+P M F L +  P V         I  IF +   + D IT ++IY +
Sbjct: 125 GMIAPEAVALRIINP-MRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAV 183

Query: 200 FREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSY 259
              G   G+  K E+ L     +L+ +   + MTPR  V + ++ ++ +    K+ +  +
Sbjct: 184 VEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAEHPH 243

Query: 260 NYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETF 319
           + F V  + I  IIG +++K L  ++++N+S+  ++    I+  L +P+T++  + LE+F
Sbjct: 244 SKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA-LNSGVQIRNTLIVPDTLTLSEALESF 302

Query: 320 KKNKSELSLVIDEYGELEGIITINDIIHSLIGD-ISNSYQEEIEFCEDGSWIISASMTFD 378
           K    + +++++EY  + GIIT+ND++ +L+GD +    +E+I   ++ SW+I      D
Sbjct: 303 KTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPID 362

Query: 379 RFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIER 438
               +L     FP   S NY T+ GF+M  L  IPK +++  +   K EV+D++N +I++
Sbjct: 363 DVMRVLDID-EFPQ--SGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQ 419

Query: 439 LLVTILNDK 447
           LLVT ++ K
Sbjct: 420 LLVTRIDSK 428

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AE46|YTFL_ECOL6 UPF0053 inner membrane protein YtfL OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ytfL PE=3 SV=1

 Score =  205 bits (522), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 236/429 (55%), Gaps = 18/429 (4%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           LI ++  FSMSEI++  S++++LK L ++G+I A   L + ENP  FF+ VQIG+  ++I
Sbjct: 11  LIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAI 70

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDH-----AHEISLVIVVFSITFFSLIFGELIPKRI 140
             G  G+    A+ +P   F SL   +     + ++S ++    +T   ++F +L PKRI
Sbjct: 71  LGGIVGD----AAFSPA--FHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLTPKRI 124

Query: 141 AMQYSEKAA-SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKL 199
            M   E  A  II+P M F L +  P V         I  IF +   + D IT ++IY +
Sbjct: 125 GMIAPEAVALRIINP-MRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAV 183

Query: 200 FREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSY 259
              G   G+  K E+ L     +L+ +   + MTPR  V + ++ ++ +    K+ +  +
Sbjct: 184 VEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAEHPH 243

Query: 260 NYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETF 319
           + F V  + I  IIG +++K L  ++++N+S+  ++    I+  L +P+T++  + LE+F
Sbjct: 244 SKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA-LNSGVQIRNTLIVPDTLTLSEALESF 302

Query: 320 KKNKSELSLVIDEYGELEGIITINDIIHSLIGD-ISNSYQEEIEFCEDGSWIISASMTFD 378
           K    + +++++EY  + GIIT+ND++ +L+GD +    +E+I   ++ SW+I      D
Sbjct: 303 KTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPID 362

Query: 379 RFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIER 438
               +L     FP   S NY T+ GF+M  L  IPK +++  +   K EV+D++N +I++
Sbjct: 363 DVMRVLDID-EFPQ--SGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQ 419

Query: 439 LLVTILNDK 447
           LLVT ++ K
Sbjct: 420 LLVTRIDSK 428

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

>sp|P0AE47|YTFL_ECO57 UPF0053 inner membrane protein YtfL OS=Escherichia coli O157:H7 GN=ytfL PE=3 SV=1

 Score =  205 bits (522), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 132/429 (30%), Positives = 236/429 (55%), Gaps = 18/429 (4%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           LI ++  FSMSEI++  S++++LK L ++G+I A   L + ENP  FF+ VQIG+  ++I
Sbjct: 11  LIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAI 70

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDH-----AHEISLVIVVFSITFFSLIFGELIPKRI 140
             G  G+    A+ +P   F SL   +     + ++S ++    +T   ++F +L PKRI
Sbjct: 71  LGGIVGD----AAFSPA--FHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLTPKRI 124

Query: 141 AMQYSEKAA-SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKL 199
            M   E  A  II+P M F L +  P V         I  IF +   + D IT ++IY +
Sbjct: 125 GMIAPEAVALRIINP-MRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAV 183

Query: 200 FREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSY 259
              G   G+  K E+ L     +L+ +   + MTPR  V + ++ ++ +    K+ +  +
Sbjct: 184 VEAGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAEHPH 243

Query: 260 NYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETF 319
           + F V  + I  IIG +++K L  ++++N+S+  ++    I+  L +P+T++  + LE+F
Sbjct: 244 SKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA-LNSGVQIRNTLIVPDTLTLSEALESF 302

Query: 320 KKNKSELSLVIDEYGELEGIITINDIIHSLIGD-ISNSYQEEIEFCEDGSWIISASMTFD 378
           K    + +++++EY  + GIIT+ND++ +L+GD +    +E+I   ++ SW+I      D
Sbjct: 303 KTAGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPID 362

Query: 379 RFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIER 438
               +L     FP   S NY T+ GF+M  L  IPK +++  +   K EV+D++N +I++
Sbjct: 363 DVMRVLDID-EFPQ--SGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQ 419

Query: 439 LLVTILNDK 447
           LLVT ++ K
Sbjct: 420 LLVTRIDSK 428

Escherichia coli O157:H7 (taxid: 83334)

>sp|P44717|Y452_HAEIN UPF0053 protein HI_0452 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0452 PE=3 SV=1

 Score =  182 bits (461), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 232/436 (53%), Gaps = 14/436 (3%)

Query: 15  HMVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFS 74
           H +L++   + LI  + + S +EI++ + ++++L+ L  KG +  L  L L E+P  F +
Sbjct: 7   HTILAI---VALILSSAVVSSAEISLASPRKLKLQSLANKGDVRPLQVLKLQEHPGRFIT 63

Query: 75  TVQIGITLISIFNGAFGESSL---VASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLI 131
            VQI + +++I  G  GES+L   +A +  +    S +   A  I+ ++V    T   ++
Sbjct: 64  VVQILLNMVAILGGGIGESALSPYIADILNRSFEGSWIAPTASTIAFILV----TCLFIL 119

Query: 132 FGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLI 191
           F +LIPKRIA+ Y E  A  +  +M F + +  P V            +F I   + D +
Sbjct: 120 FADLIPKRIAITYPEMVALSVVGIMNFSMYVFKPLVWFFDTIANVFFRLFRISTVREDGM 179

Query: 192 TEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNL 251
           T E+I+ +   G + G+    E+ L      +  +   + MT R  + +++   + ++ +
Sbjct: 180 TSEDIFAVVEAGAEAGVLKTQEHYLIENIFDMQARTVTSTMTTRENIVYLDRTFSRQEVM 239

Query: 252 IKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETIS 311
             +   S++   +    + KI+G + + TL    + N ++V  D    ++  LF+P+T+S
Sbjct: 240 DTLSRDSHSKIVICDNGLDKILGYIESHTLLTMYLQNENVVLTD-PKLLRKALFVPDTLS 298

Query: 312 TMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWII 371
             ++LE FK    + +++++EY  + GI+T+ND++  ++G++ ++ +E I   ++ SW+I
Sbjct: 299 LYEVLELFKSTGEDFAIIVNEYALVVGIVTLNDVMSIVMGELVSNEEEYIVSRDENSWLI 358

Query: 372 SASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDM 431
             +   +    +L +   FP +   NY T++GF+M  L  IPK +++ ++   K EVID 
Sbjct: 359 DGATPLEEVTRVL-DIAYFPDE--ENYETISGFMMYMLRKIPKKTDSVVYGKYKFEVIDT 415

Query: 432 NNNKIERLLVTILNDK 447
            N KI+++LV+++ ++
Sbjct: 416 ENFKIDQILVSLVKEQ 431

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|O05241|YUGS_BACSU UPF0053 protein YugS OS=Bacillus subtilis (strain 168) GN=yugS PE=3 SV=2

 Score =  162 bits (409), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 203/398 (51%), Gaps = 14/398 (3%)

Query: 16  MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFST 75
           ++L L     LI +  +F  +E AI+  +  ++ +LIE G   AL+A  +  N   + S 
Sbjct: 2   LILQLIAIFVLIGITAVFVAAEFAIVKIRGSKINQLIESGDSRALAAHKIISNLDEYLSA 61

Query: 76  VQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGEL 135
            Q+GIT+ ++  G  GE +    L P      +     H ++ V+    +TF  ++ GEL
Sbjct: 62  CQLGITITALGLGWLGEPTFERFLHPLFTMTGIPEPFNHIVTFVVAFIIVTFLHVVMGEL 121

Query: 136 IPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKND--LITE 193
            PK +++Q +E  +  I+  +++  K+  PF+K L  S   ++ +F     K    +I+E
Sbjct: 122 APKTVSIQKAEAVSLWIAKPLIWFYKITYPFIKALNGSASFLVKLFGFHSVKEHQVVISE 181

Query: 194 EEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK 253
           EE+  +  E ++ G  N+ E+   ++  + D++ A  +M PR ++  I+++ ++E+ +  
Sbjct: 182 EELRLILSESYEKGEINQSEFRYVNKIFEFDNRVAREIMIPRTEIAVISLEQSLEEAIHH 241

Query: 254 ILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTM 313
           I++  Y  +PV K     I+G +N+K +FK     +    I +   ++P + + E+I   
Sbjct: 242 IINERYTRYPVIKDDKDHILGIINSKDMFKAYFLGQP---IKLNQIMRPVIRVIESIPVQ 298

Query: 314 QLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSY-QEEIEFC---EDGSW 369
           QLL   +K +  +++++DEYG   G++T+ DII  ++G+I + Y Q+E        +  +
Sbjct: 299 QLLIRMQKERIHMAILVDEYGGTAGLVTVEDIIEEIVGEIRDEYDQDETPHILKKGEHHY 358

Query: 370 IISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMT 407
           ++      D   +LL   +      +    T+AG+++T
Sbjct: 359 VMDGKALIDEVNDLLDIAIE-----NEEIDTIAGWLLT 391

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O07589|YHDT_BACSU UPF0053 protein YhdT OS=Bacillus subtilis (strain 168) GN=yhdT PE=3 SV=1

 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 193/390 (49%), Gaps = 16/390 (4%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           LI L   F  SE AI+  +R R+ +LI +G+  A+ A  +  +   + S  Q+GITL SI
Sbjct: 13  LIALTAFFVASEFAIVRVRRSRIDQLITEGNKRAILARRVITDLDEYLSASQLGITLTSI 72

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
             G  GE +    L P      L    +H +S  +    ITF  ++ GEL PK +A+Q +
Sbjct: 73  GLGVLGEPAFERLLHPLFEPLGLPDSVSHAVSFAVAYGLITFLHVVVGELAPKTVAIQKA 132

Query: 146 EKAASIIS-PLMLFLLKLMGPFVKILTISTESILDIFNIK--YKKNDLITEEEIYKLFRE 202
           E+   +I+ PL LF L L+ PF+ IL  S   +  +F +K   + +   +EEE+  L  E
Sbjct: 133 EQLTLLIAGPLRLFYL-LLFPFIWILNGSARLLCGMFGLKPASEHDGSHSEEELRMLLSE 191

Query: 203 GFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYF 262
               G  N  EY   ++  + D++ A  +M PR ++  ++ +  + + L  +L   Y  +
Sbjct: 192 SLKNGEINPSEYKYVNKIFEFDNRIAKEIMIPRKEMAAVSTEMTMAEMLEVMLKEKYTRW 251

Query: 263 PVYKKSISKIIGTLNTKTLFKKII--SNRSIVNIDITSAIQPPLFIPETISTMQLLETFK 320
           PV       ++G +NTK LF  ++  +    + + I   ++P + + ETI    LL   +
Sbjct: 252 PVTDGDKDSVLGLVNTKHLFSDLLFMTEEERMKMTIHPYVRPVIEVIETIPVHDLLIKMQ 311

Query: 321 KNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE----IEFCEDGSWIISASMT 376
           + +  ++++ DEYG   G++T  DI+  ++G+I + + E+    I+   DG +++   + 
Sbjct: 312 RERIHMAILSDEYGGTSGLVTTEDILEEIVGEIRDEFDEDEQPLIQKLGDGHYVMDGKVR 371

Query: 377 FDRFKELLSNQVNFPVKISRNYHTLAGFVM 406
            D+   LL         I  +  T+ G ++
Sbjct: 372 IDQVNSLLG------ASIQEDVDTIGGLIL 395

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|O07585|YHDP_BACSU UPF0053 protein YhdP OS=Bacillus subtilis (strain 168) GN=yhdP PE=3 SV=1

 Score =  150 bits (379), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 192/388 (49%), Gaps = 11/388 (2%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           LI L   F  SE AII  +  R+ +LI +G+  A++   ++ +   + S  Q+GITL SI
Sbjct: 12  LIALTAFFVASEFAIIRIRGSRIDQLIAEGNKAAIAVKKVTTHLDEYLSACQLGITLTSI 71

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
             G  GES++   L P     ++    +H IS +     ITF  ++ GEL PK +A+Q +
Sbjct: 72  GLGVLGESTIERLLHPLFVQMNVPGSLSHVISFIFAYAIITFLHVVVGELAPKTVAIQKA 131

Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIK-YKKNDLI-TEEEIYKLFREG 203
           E  + + +  +++  ++  PF+ +L  S   +   F ++   +N+L  +EEE+  +  E 
Sbjct: 132 EAVSMLFAKPLIWFYRIAFPFIWLLNNSARLLTKAFGLETVSENELAHSEEELRIILSES 191

Query: 204 FDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263
           +  G  N+ E+   ++  + DD+ A  +M PR ++  +  D  I + +  I    Y  +P
Sbjct: 192 YKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEIVSLPHDIKISEMMDIIQIEKYTRYP 251

Query: 264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNK 323
           V +     IIG +N K +    IS    V+  I+  + P + + E+     LL   +K +
Sbjct: 252 VEEGDKDNIIGVINIKEVLTACISGEVSVDSTISQFVNPIIHVIESAPIQDLLVKMQKER 311

Query: 324 SELSLVIDEYGELEGIITINDIIHSLIGDISNSYQ----EEIEFCEDGSWIISASMTFDR 379
             ++++ DEYG   G++T+ DII  ++G+I + +      EI    +G +I+   +  D+
Sbjct: 312 VHMAILSDEYGGTAGLVTVEDIIEEIVGEIRDEFDIDEISEIRKIGEGHYILDGKVLIDQ 371

Query: 380 FKELLSNQVNFPVKISRNYHTLAGFVMT 407
             +LL   +      +    T+ G+ +T
Sbjct: 372 VNDLLGIHLE-----NEEVDTIGGWFLT 394

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P54428|YRKA_BACSU UPF0053 protein YrkA OS=Bacillus subtilis (strain 168) GN=yrkA PE=3 SV=2

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 196/391 (50%), Gaps = 15/391 (3%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           LI L   F  +E AI+  +  ++ +LI +G  GA+SA  +  +   + S  Q+GIT+ ++
Sbjct: 12  LIVLTAFFVATEFAIVKIRSSKIDQLILEGKKGAISAKKVITHLDEYLSACQLGITVTAL 71

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
             G  GES+    L P    F +    +H + LVI     TF  ++ GEL PK +A+Q +
Sbjct: 72  GIGWVGESTFEVILHPLFAHFHVSETVSHVLILVIAFVMATFLHVVVGELAPKTLAIQKA 131

Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIK-YKKNDLI-TEEEIYKLFREG 203
           E    + +  +++  +++ PF+  L  S   I+ +F +K   +++L  +EEE+  L  E 
Sbjct: 132 ETITLLTAKPIIWFYRILFPFIWFLNGSARFIVGLFGLKPASEHELAHSEEELRILLSES 191

Query: 204 FDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDS-SYNYF 262
           +  G  N+ E    +   + D++ A  +M PR ++  I+ +D+ E  ++KI+ + SY  +
Sbjct: 192 YKSGEINQNELKYVNNIFEFDERIAKEIMIPRREIVAISSEDSYE-TIVKIIKTESYTRY 250

Query: 263 PVYKKSISKIIGTLNTKTLFKKIISNRSIVNID--ITSAIQPPLFIPETISTMQLLETFK 320
           PV       IIG +N K      I     +  D  + + I P + + E++    +L   +
Sbjct: 251 PVLNGDKDSIIGFINAKEFLSAYIDTDQKIKEDFKLENHINPVIHVIESVPIHDVLVKMQ 310

Query: 321 KNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE----IEFCEDGSWIISASMT 376
           K ++ +++++DEYG   G++T  DI+  ++G+I + + ++    I    D  +I+ + + 
Sbjct: 311 KERTHIAILVDEYGGTSGLVTAEDILEEIVGEIRDEFDKDEVPNIRKVNDNHYILDSKVL 370

Query: 377 FDRFKELLSNQVNFPVKISRNYHTLAGFVMT 407
            +   +LL   +      S    T+ G+ MT
Sbjct: 371 IEDVNDLLGTTLA-----SDEVDTIGGWFMT 396

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|P54505|YQHB_BACSU UPF0053 protein YqhB OS=Bacillus subtilis (strain 168) GN=yqhB PE=3 SV=1

 Score =  139 bits (351), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 175/335 (52%), Gaps = 4/335 (1%)

Query: 30  NGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGA 89
            G F   E +I+  +R ++ +L+ KG  GA +A  +  +   + S  Q+GIT+ ++  G 
Sbjct: 25  TGFFVAVEFSIVKVRRSKIDQLVAKGKKGAKAAKHVITHLDEYLSACQLGITVAALGLGW 84

Query: 90  FGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAA 149
            GE ++   L P      L     H +SLVI    +T+ +++ GEL PK  A+Q +E   
Sbjct: 85  LGEPTVQTLLRPLFHKAGLNESLTHLLSLVIAFLVVTYLNVVIGELAPKSFAIQKAESIT 144

Query: 150 SIISPLMLFLLKLMGPFVKILTISTESILDIFNIK-YKKNDLI-TEEEIYKLFREGFDIG 207
            + +  +++  K+M PF+ +L  S   I  +F +K   +++L  TEEE+  L  E +  G
Sbjct: 145 LLFAKPLIWFYKIMFPFIWLLNHSARLITGVFGLKPASEHELAYTEEELRVLLAESYKSG 204

Query: 208 IFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK-ILDSSYNYFPVYK 266
              K E    +     D + A  +M PR ++  +++D++   NL + +  + Y  +PV +
Sbjct: 205 EIRKSELKYMNNIFTFDKRMAKEIMVPRNEMVSLSLDEDSISNLQETVKQTKYTRYPVVR 264

Query: 267 KSISKIIGTLNTK-TLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSE 325
           +    +IG +N K  LF  +  + SI    I   +QP + + ETI   +LL   +K ++ 
Sbjct: 265 EDKDNVIGVINMKEVLFSMLTKDFSIKKHQIEPFVQPVIHVIETIPIYKLLLKMQKERTH 324

Query: 326 LSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
           ++++IDEYG   G++T+ DII  ++G+I + +  +
Sbjct: 325 MAILIDEYGGTSGLVTVEDIIEEIVGEIRDEFDAD 359

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
152980989	443	hemolysin [Janthinobacterium sp. Marseil	0.939	0.948	0.567	1e-142
193222433	443	Conserved hypothetical protein; putative	0.932	0.941	0.573	1e-141
134096341	426	hypothetical protein HEAR3187 [Herminiim	0.919	0.964	0.574	1e-139
427404407	441	hypothetical protein HMPREF9710_04743 [M	0.928	0.941	0.449	1e-111
397662435	427	putative hemolysin domain protein [Taylo	0.926	0.969	0.443	2e-99
399117090	427	putative haemolysin domain protein [Tayl	0.928	0.971	0.439	2e-98
319778672	409	hemolysin-like protein [Taylorella equig	0.906	0.990	0.440	9e-96
348590761	409	hemolysin-like protein [Taylorella asini	0.908	0.992	0.429	5e-93
443478263	447	protein of unknown function DUF21 [Pseud	0.930	0.930	0.371	4e-86
218247228	443	hypothetical protein PCC8801_2432 [Cyano	0.923	0.932	0.383	1e-85

>gi|152980989|ref|YP_001355123.1| hemolysin [Janthinobacterium sp. Marseille] gi|151281066|gb|ABR89476.1| hemolysin [Janthinobacterium sp. Marseille]

 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 240/423 (56%), Positives = 326/423 (77%), Gaps = 3/423 (0%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           LI +NG+F+MSEIAI+TSKR+RL+KL E GS GA +AL LS++P  F ST+Q+GITLI I
Sbjct: 9   LILVNGVFAMSEIAIVTSKRIRLQKLSENGSRGAQAALDLSDSPSRFLSTIQVGITLIGI 68

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
           FNGAFGE+SLV  LTP++    ++  +A EI+L +VV  ITF SLI GEL+PKRIAMQY 
Sbjct: 69  FNGAFGEASLVERLTPEVALIPVLNVYAREIALGVVVVGITFASLILGELVPKRIAMQYP 128

Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFD 205
           E  AS+++  ML+L +LMGPFVK+LT +TE IL +  + +KK+D +TEEEI  LFREG D
Sbjct: 129 EVVASVVAAPMLWLSRLMGPFVKVLTGTTEFILRVLGMHHKKDDAVTEEEIAGLFREGTD 188

Query: 206 IGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVY 265
            G+F K E+++ SRAL+LDDQ    LMTPR+ V+FI+++D IE NL KI DSSYN FPV 
Sbjct: 189 AGLFEKTEHDIVSRALRLDDQRVAGLMTPRLDVHFIDLEDPIEVNLAKIADSSYNRFPVC 248

Query: 266 KKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSE 325
           K  IS +IG ++  +LF++ I  ++I  +DI +A +PPLF+PETIS MQLLET KKN++E
Sbjct: 249 KGDISHVIGIVHAGSLFEQAIRGKAINTVDIAAATRPPLFVPETISAMQLLETLKKNRAE 308

Query: 326 LSLVIDEYGELEGIITINDIIHSLIGDISN-SYQEEIEFC--EDGSWIISASMTFDRFKE 382
           L+LVIDEYGE+EGI+T++D++ +L+GD+S      E++    +DGSW+I   ++FDRF+E
Sbjct: 309 LALVIDEYGEIEGIVTLSDVLGALVGDVSVIDEHHEVDGVRRDDGSWLIDGGVSFDRFRE 368

Query: 383 LLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT 442
           LL   V FP + S  YHTLAGFVMTFLGHIP++S++F W+  +IEV+DM+ N+I+RLL+T
Sbjct: 369 LLETDVRFPEEASGTYHTLAGFVMTFLGHIPQMSDSFEWEGYRIEVVDMDRNRIDRLLIT 428

Query: 443 ILN 445
            L+
Sbjct: 429 KLD 431

Source: Janthinobacterium sp. Marseille

Species: Janthinobacterium sp. Marseille

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|193222433|emb|CAL63295.2| Conserved hypothetical protein; putative CBS domain; putative membrane protein [Herminiimonas arsenicoxydans]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/420 (57%), Positives = 325/420 (77%), Gaps = 3/420 (0%)

Query: 29  LNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNG 88
           +NG+F+MSEIAI+TSKR+RL+KL E GS GA +AL LSE+P  F ST+Q+GITLI IFNG
Sbjct: 12  VNGVFAMSEIAIVTSKRIRLQKLAENGSRGAKAALDLSESPSRFLSTIQVGITLIGIFNG 71

Query: 89  AFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKA 148
           AFGE+SLV  LTP+I    ++  +A EI+L IVV  ITF SLI GEL+PKRIAMQY E  
Sbjct: 72  AFGEASLVERLTPEIALIPVLSMYAREIALGIVVVGITFGSLILGELVPKRIAMQYPEVV 131

Query: 149 ASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGI 208
           AS+++  ML+L +LMGPFVKILT +TE IL I  + +KK+D +TEEEI  L REG D G+
Sbjct: 132 ASVVAAPMLWLSRLMGPFVKILTGTTEFILRILGMHHKKDDAVTEEEIAGLIREGTDAGL 191

Query: 209 FNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS 268
           F K E+++ SRAL+LDDQ    LMTPR+ V+FI+++D IE NL KI DSSYN FPV + +
Sbjct: 192 FEKTEHDIVSRALRLDDQRVAALMTPRLDVHFIDLEDTIETNLAKIADSSYNRFPVCRGN 251

Query: 269 ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSL 328
           IS IIG ++  +LF+++I  ++I ++DI  A +PPLF+PETIS MQLLET KKN++EL+L
Sbjct: 252 ISHIIGIVHAGSLFEQMIRGKTITSLDIEGATRPPLFVPETISAMQLLETLKKNRAELAL 311

Query: 329 VIDEYGELEGIITINDIIHSLIGDISN-SYQEEIEFC--EDGSWIISASMTFDRFKELLS 385
           VIDEYGE+EGI+T++D++ +L+GD+S      E++    +DGSW+I   ++FDRF+ELL 
Sbjct: 312 VIDEYGEIEGIVTLSDVLGALVGDVSVIDEHHEVDGVRRDDGSWLIDGGVSFDRFRELLE 371

Query: 386 NQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILN 445
             V FP + S  YHTLAGFVMTFLGHIP++S++F W+  +IEV+DM+ N+I+RLL+T ++
Sbjct: 372 TDVRFPEEASGTYHTLAGFVMTFLGHIPQMSDSFEWEGYRIEVVDMDRNRIDRLLITKID 431

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|134096341|ref|YP_001101416.1| hypothetical protein HEAR3187 [Herminiimonas arsenicoxydans]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/414 (57%), Positives = 319/414 (77%), Gaps = 3/414 (0%)

Query: 35  MSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESS 94
           MSEIAI+TSKR+RL+KL E GS GA +AL LSE+P  F ST+Q+GITLI IFNGAFGE+S
Sbjct: 1   MSEIAIVTSKRIRLQKLAENGSRGAKAALDLSESPSRFLSTIQVGITLIGIFNGAFGEAS 60

Query: 95  LVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISP 154
           LV  LTP+I    ++  +A EI+L IVV  ITF SLI GEL+PKRIAMQY E  AS+++ 
Sbjct: 61  LVERLTPEIALIPVLSMYAREIALGIVVVGITFGSLILGELVPKRIAMQYPEVVASVVAA 120

Query: 155 LMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEY 214
            ML+L +LMGPFVKILT +TE IL I  + +KK+D +TEEEI  L REG D G+F K E+
Sbjct: 121 PMLWLSRLMGPFVKILTGTTEFILRILGMHHKKDDAVTEEEIAGLIREGTDAGLFEKTEH 180

Query: 215 NLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIG 274
           ++ SRAL+LDDQ    LMTPR+ V+FI+++D IE NL KI DSSYN FPV + +IS IIG
Sbjct: 181 DIVSRALRLDDQRVAALMTPRLDVHFIDLEDTIETNLAKIADSSYNRFPVCRGNISHIIG 240

Query: 275 TLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYG 334
            ++  +LF+++I  ++I ++DI  A +PPLF+PETIS MQLLET KKN++EL+LVIDEYG
Sbjct: 241 IVHAGSLFEQMIRGKTITSLDIEGATRPPLFVPETISAMQLLETLKKNRAELALVIDEYG 300

Query: 335 ELEGIITINDIIHSLIGDISN-SYQEEIEFC--EDGSWIISASMTFDRFKELLSNQVNFP 391
           E+EGI+T++D++ +L+GD+S      E++    +DGSW+I   ++FDRF+ELL   V FP
Sbjct: 301 EIEGIVTLSDVLGALVGDVSVIDEHHEVDGVRRDDGSWLIDGGVSFDRFRELLETDVRFP 360

Query: 392 VKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILN 445
            + S  YHTLAGFVMTFLGHIP++S++F W+  +IEV+DM+ N+I+RLL+T ++
Sbjct: 361 EEASGTYHTLAGFVMTFLGHIPQMSDSFEWEGYRIEVVDMDRNRIDRLLITKID 414

Source: Herminiimonas arsenicoxydans

Species: Herminiimonas arsenicoxydans

Genus: Herminiimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|427404407|ref|ZP_18895147.1| hypothetical protein HMPREF9710_04743 [Massilia timonae CCUG 45783] gi|425716958|gb|EKU79925.1| hypothetical protein HMPREF9710_04743 [Massilia timonae CCUG 45783]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 188/418 (44%), Positives = 297/418 (71%), Gaps = 3/418 (0%)

Query: 30  NGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGA 89
           NG+F+MSE+A++++KR+RL++  E+GS GA +A+ L++NP HF STVQ+GITLI IF GA
Sbjct: 14  NGVFAMSELALVSAKRMRLERRAEEGSRGARTAIALADNPSHFLSTVQVGITLIGIFTGA 73

Query: 90  FGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAA 149
           FGE+SLV+ LTP+I     +  +A+EI+L +VV +ITFFS++ GEL+PKRIAM++ E  A
Sbjct: 74  FGEASLVSRLTPQIETIGFLAPYAYEIALFVVVLAITFFSIVLGELVPKRIAMRHPETMA 133

Query: 150 SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIF 209
           ++I+P +  L  +M PFVK+L+++TE+I+ +F I   K +  TEE+I  +F+EG D G+F
Sbjct: 134 TLIAPPLNMLSVIMSPFVKVLSLTTEAIVRLFGIHDAKEEAPTEEDITGMFKEGTDAGLF 193

Query: 210 NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSI 269
            K EY++ SRAL+LDD+    LMTPR+ +  I++D      L  I   +Y+ FPVY+   
Sbjct: 194 EKTEYDIVSRALRLDDRHLKALMTPRVDLVMIDLDAQRRDILELISCHTYSRFPVYRGDR 253

Query: 270 SKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLV 329
           ++I+G +  + L  + + + S+  ++I  A+   LF+PET+S M LLE FKKN++EL+L+
Sbjct: 254 AQILGYVKVRDLLAQSVRHGSLEAVNIEDAVSDLLFVPETVSAMVLLELFKKNRAELALI 313

Query: 330 IDEYGELEGIITINDIIHSLIGDISNSYQEEIEFC---EDGSWIISASMTFDRFKELLSN 386
           +DEYG+++G++T++D++ +L+GD++   +E        +DGSW++   +  DRF++L++ 
Sbjct: 314 VDEYGDIQGMVTLSDVMSALVGDVTVIGEENDPDAVQRQDGSWLLDGGVDLDRFRDLMNT 373

Query: 387 QVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTIL 444
            V FP + +  YHTLAGFV+   G+IPK SE F W   +IEV+DM+ N+I+R+LV  L
Sbjct: 374 DVRFPDEGTGAYHTLAGFVLYQFGYIPKTSEFFEWDGYRIEVVDMDGNRIDRILVAQL 431

Source: Massilia timonae CCUG 45783

Species: Massilia timonae

Genus: Massilia

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|397662435|ref|YP_006503135.1| putative hemolysin domain protein [Taylorella equigenitalis ATCC 35865] gi|394350614|gb|AFN36528.1| putative hemolysin domain protein [Taylorella equigenitalis ATCC 35865] gi|399115292|emb|CCG18091.1| subname: full=putative haemolysin domain protein [Taylorella equigenitalis 14/56]

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 187/422 (44%), Positives = 284/422 (67%), Gaps = 8/422 (1%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           L FLNG+F+MSEIA+++SK+ RL+K  E+G   A  AL L  +P  F STVQIGITLI I
Sbjct: 10  LTFLNGLFAMSEIAVVSSKKTRLQKQAEQGKTSAKVALALQHDPARFLSTVQIGITLIGI 69

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
           F+GAFG++SLV+ LTP +    L  ++++EISL IVV SITF S++FGEL+PKR+A+ Y 
Sbjct: 70  FSGAFGQASLVSKLTPILT--PLFGNYSNEISLAIVVISITFLSIVFGELVPKRLAIHYP 127

Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFD 205
           EK A++IS  M  L K + PFV IL+ ST  +L +  I  K+ + +TEE+I  +  EG  
Sbjct: 128 EKIANVISRPMTILSKAVAPFVWILSFSTNLVLKLIGISKKEENSLTEEDISGILHEGAT 187

Query: 206 IGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVY 265
            G+F K E+N+  RAL LDD+   T+MTPR ++++I+I+  I+  L  I DS Y+ FPV 
Sbjct: 188 AGLFEKTEHNIVERALSLDDRHIATIMTPRSEIHYIDINAPIKDTLTIIADSPYSRFPVV 247

Query: 266 KKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSE 325
              +  +IG ++  +LF++ I        DI   ++P  F+PE IS M LLE+ +++KSE
Sbjct: 248 DGQLDNVIGIVDAGSLFEQQIRGEP---TDIRKTMKPVKFVPENISAMDLLESLQEHKSE 304

Query: 326 LSLVIDEYGELEGIITINDIIHSLIGD-ISNSYQEEIEFCE--DGSWIISASMTFDRFKE 382
           +++VI+EYGE+EG++T+ DI+  L+G  I  +  E ++  +  DG+W+I  +MT +RFKE
Sbjct: 305 IAVVINEYGEVEGVVTLRDILTVLVGHAIPMNENEMLDAVQRKDGTWLIEGTMTLERFKE 364

Query: 383 LLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT 442
           + +  ++       +YHT+AG +M  LGHIP+ +E+F W +   EV+DM+ ++I+R+LV 
Sbjct: 365 IFNEDIDASSDEEAHYHTIAGLIMHKLGHIPRETESFEWNSYNFEVVDMDKHRIDRVLVK 424

Query: 443 IL 444
           +L
Sbjct: 425 VL 426

Source: Taylorella equigenitalis ATCC 35865

Species: Taylorella equigenitalis

Genus: Taylorella

Family: Alcaligenaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|399117090|emb|CCG19904.1| putative haemolysin domain protein [Taylorella asinigenitalis 14/45]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 186/423 (43%), Positives = 282/423 (66%), Gaps = 8/423 (1%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           L F+NGIF+MSEIA+++SK+ RL+K  E G + A +AL L  +P  F STVQIGITLI I
Sbjct: 10  LTFINGIFAMSEIAVVSSKKTRLQKQAEDGKLSAKAALALQHDPARFLSTVQIGITLIGI 69

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
           F+GAFG++SLV+ LTP +    +  + A EISL IVV SITF S++FGEL+PKR+A+ Y 
Sbjct: 70  FSGAFGQASLVSKLTPILT--PIFGNFASEISLAIVVISITFLSIVFGELVPKRLAIHYP 127

Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFD 205
           E+ A++IS  M  L K + PFV IL+ ST  +L +  I  K+ + +TEE+I  +  EG  
Sbjct: 128 ERIANLISRPMTILSKAVAPFVWILSFSTNLVLKLIGISKKEENSLTEEDISGILHEGAS 187

Query: 206 IGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVY 265
            G+F K E+N+  RAL LDD+   ++MTPR ++++I+I+  +   L  I DS Y+ FPV 
Sbjct: 188 AGLFEKTEHNIVERALSLDDRHIASIMTPRSEIHYIDINAPLSDTLNTIADSPYSRFPVV 247

Query: 266 KKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSE 325
              +  ++G ++  +LF++ I  +     DI   ++P  F+PE IS M LLE+ +++KSE
Sbjct: 248 DGQLDNVLGIVDAGSLFEQQIRGQ---ETDIRKTMKPVKFVPENISAMDLLESLQEHKSE 304

Query: 326 LSLVIDEYGELEGIITINDIIHSLIGD-ISNSYQEEIEFCE--DGSWIISASMTFDRFKE 382
           +++VI+EYGE+EG++T+ DI+  L+G  I  +  E ++  +  DGSW+I  +MT +RF+E
Sbjct: 305 IAVVINEYGEVEGVVTLRDILTVLVGHTIPVNENEMLDAVQRKDGSWLIDGTMTLERFEE 364

Query: 383 LLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT 442
           +    +        +YHT+AGF+M  LGHIP+ +E+  W N   EV+DM+ ++I+R+LV 
Sbjct: 365 IFDQDLEEAGDEDSHYHTVAGFIMHKLGHIPRETESVEWNNYYFEVVDMDKHRIDRVLVK 424

Query: 443 ILN 445
           ILN
Sbjct: 425 ILN 427

Source: Taylorella asinigenitalis 14/45

Species: Taylorella asinigenitalis

Genus: Taylorella

Family: Alcaligenaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|319778672|ref|YP_004129585.1| hemolysin-like protein [Taylorella equigenitalis MCE9] gi|317108696|gb|ADU91442.1| Hemolysin-like protein [Taylorella equigenitalis MCE9]

 Score =  357 bits (915), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 182/413 (44%), Positives = 277/413 (67%), Gaps = 8/413 (1%)

Query: 35  MSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESS 94
           MSEIA+++SK+ RL+K  E+G   A  AL L  +P  F STVQIGITLI IF+GAFG++S
Sbjct: 1   MSEIAVVSSKKTRLQKQAEQGKTSAKVALALQHDPARFLSTVQIGITLIGIFSGAFGQAS 60

Query: 95  LVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISP 154
           LV+ LTP +    L  ++++EISLVIVV SITF S++FGEL+PKR+A+ Y EK A++IS 
Sbjct: 61  LVSKLTPILT--PLFGNYSNEISLVIVVMSITFLSIVFGELVPKRLAIHYPEKIANVISR 118

Query: 155 LMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEY 214
            M  L K + PFV IL+ ST  +L +  I  K+ + +TEE+I  +  EG   G+F K E+
Sbjct: 119 PMTILSKAVAPFVWILSFSTNLVLKLIGISKKEENSLTEEDISGILHEGATAGLFEKTEH 178

Query: 215 NLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIG 274
           N+  RAL LDD+   T+MTPR ++++I+I+  I+  L  I DS Y+ FPV    +  +IG
Sbjct: 179 NIVERALSLDDRHIATIMTPRSEIHYIDINAPIKDTLTIIADSPYSRFPVVDGQLDNVIG 238

Query: 275 TLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYG 334
            ++  +LF++ I        DI   ++P  F+PE IS M LLE+ +++KSE+++VI+EYG
Sbjct: 239 IVDAGSLFEQQIRGEP---TDIRKTMKPVKFVPENISAMDLLESLQEHKSEIAVVINEYG 295

Query: 335 ELEGIITINDIIHSLIGD-ISNSYQEEIEFCE--DGSWIISASMTFDRFKELLSNQVNFP 391
           E+EG++T+ DI+  L+G  I  +  E ++  +  DG+W+I  +MT +RFKE+ +  ++  
Sbjct: 296 EVEGVVTLRDILTVLVGHAIPMNENELLDAVQRKDGTWLIEGTMTLERFKEIFNEDIDAS 355

Query: 392 VKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTIL 444
                +YHT+AG +M  LGHIP+ +E+F W +   EV+DM+ ++I+R+LV +L
Sbjct: 356 SDEEAHYHTIAGLIMHKLGHIPRETESFEWNSYNFEVVDMDKHRIDRVLVKVL 408

Source: Taylorella equigenitalis MCE9

Species: Taylorella equigenitalis

Genus: Taylorella

Family: Alcaligenaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|348590761|ref|YP_004875223.1| hemolysin-like protein [Taylorella asinigenitalis MCE3] gi|347974665|gb|AEP37200.1| Hemolysins rlated protein [Taylorella asinigenitalis MCE3]

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 178/414 (42%), Positives = 273/414 (65%), Gaps = 8/414 (1%)

Query: 35  MSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESS 94
           MSEIA+++SK+ RL+K  E G + A +AL L  +P  F STVQIGITLI IF+GAFG++S
Sbjct: 1   MSEIAVVSSKKTRLQKQAEDGKLSAKAALALQHDPSRFLSTVQIGITLIGIFSGAFGQAS 60

Query: 95  LVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISP 154
           LV+ LTP +    +  + A EISL IVV SITF S++FGEL+PKR+A+ Y E+ A++IS 
Sbjct: 61  LVSKLTPILT--PIFGNFASEISLAIVVISITFLSIVFGELVPKRLAIHYPERIANLISR 118

Query: 155 LMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEY 214
            M  L K + PFV IL+ ST  +L +  I  K+ + +TEE+I  +  EG   G+F K E+
Sbjct: 119 PMTILSKAVAPFVWILSFSTNLVLKLIGISKKEENSLTEEDISGILHEGASAGLFEKTEH 178

Query: 215 NLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIG 274
           N+  RAL LDD+   ++MTPR ++++I+I+  +   L  I DS Y+ FPV    +  ++G
Sbjct: 179 NIVERALSLDDRHIASIMTPRSEIHYIDINAPLSDTLNTIADSPYSRFPVVDGQLDNVLG 238

Query: 275 TLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYG 334
            ++  +LF++ I  +     DI   ++P  F+PE IS M LLE+ +++KSE+++VI+EYG
Sbjct: 239 IVDAGSLFEQQIRGQ---ETDIRKTMKPVKFVPENISAMDLLESLQEHKSEIAVVINEYG 295

Query: 335 ELEGIITINDIIHSLIGD-ISNSYQEEIEFCE--DGSWIISASMTFDRFKELLSNQVNFP 391
           E+EG++T+ DI+  L+G  I  +  E ++  +  DGSW+I  +MT +RF+E+    +   
Sbjct: 296 EVEGVVTLRDILTVLVGHTIPVNENEMLDAVQRKDGSWLIDGTMTLERFEEIFDQDLEEA 355

Query: 392 VKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILN 445
                +YHT+AGF+M  LGHIP+ +E+  W +   EV+DM+ ++I+R+LV I N
Sbjct: 356 GDEDSHYHTVAGFIMHKLGHIPRETESVEWNSYYFEVVDMDKHRIDRVLVKIQN 409

Source: Taylorella asinigenitalis MCE3

Species: Taylorella asinigenitalis

Genus: Taylorella

Family: Alcaligenaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|443478263|ref|ZP_21068038.1| protein of unknown function DUF21 [Pseudanabaena biceps PCC 7429] gi|443016474|gb|ELS31126.1| protein of unknown function DUF21 [Pseudanabaena biceps PCC 7429]

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 157/423 (37%), Positives = 267/423 (63%), Gaps = 7/423 (1%)

Query: 24  IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLI 83
           I L+  NGIF+MSE+AII++++VRL++  ++G+  A SAL L  +P +F ST QIGITLI
Sbjct: 12  ILLVIANGIFAMSELAIISARKVRLEQWAKEGNANARSALRLISSPNNFLSTTQIGITLI 71

Query: 84  SIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQ 143
            I +GA G +++  SL   +    ++R ++  +S  IVV  IT+ SL+ GEL+PKR+AM 
Sbjct: 72  GILSGALGGTTVAKSLKELLDTVVVLRPYSESLSFSIVVGIITYLSLVLGELVPKRLAMS 131

Query: 144 YSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREG 203
            +EK A  ++P M FL  +  P V +L+ STE++L +  I+  +   +TEEEI  +  +G
Sbjct: 132 NAEKIACAVAPSMRFLANIGTPIVYLLSTSTEALLSLLGIQANEESQVTEEEIKVMIAQG 191

Query: 204 FDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263
            + G+F + E ++  R  +L D+   +LMTPR +++++++D   E+   ++L S ++ FP
Sbjct: 192 AESGMFEEAEQDMVERVFRLGDRPIKSLMTPRTEIDWLDVDAPFEETQREVLASGHSRFP 251

Query: 264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNK 323
           V ++++   +G +  K      +       ID+     PPL++ ET S + +LE FK++ 
Sbjct: 252 VARENLDDCVGIVEIKAFLNASLHGNP---IDLVKVSSPPLYVAETASALSVLEQFKQSG 308

Query: 324 SELSLVIDEYGELEGIITINDIIHSLIGDI-SNSYQEEIEFC--EDGSWIISASMTFDRF 380
             +++V DEYG +EG++T+ D++ +++GD+ SN  Q + +    EDGSW+I   ++ DR 
Sbjct: 309 DRVAMVTDEYGGVEGLVTLTDLLEAIVGDLPSNDRQGDPDAMQREDGSWLIDGMVSSDRL 368

Query: 381 KELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLL 440
           KE++  +   P +   NYHTL G +MT+L HIP + E+F W  I+ EV+DM+ N+++++L
Sbjct: 369 KEIIEVE-ELPYEKDHNYHTLGGLMMTYLRHIPMVGEHFTWDRIRFEVVDMDGNRVDKVL 427

Query: 441 VTI 443
           V I
Sbjct: 428 VNI 430

Source: Pseudanabaena biceps PCC 7429

Species: Pseudanabaena biceps

Genus: Pseudanabaena

Order: Oscillatoriales

Phylum: Cyanobacteria

Superkingdom: Bacteria

>gi|218247228|ref|YP_002372599.1| hypothetical protein PCC8801_2432 [Cyanothece sp. PCC 8801] gi|257061437|ref|YP_003139325.1| hypothetical protein Cyan8802_3678 [Cyanothece sp. PCC 8802] gi|218167706|gb|ACK66443.1| protein of unknown function DUF21 [Cyanothece sp. PCC 8801] gi|256591603|gb|ACV02490.1| protein of unknown function DUF21 [Cyanothece sp. PCC 8802]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 161/420 (38%), Positives = 265/420 (63%), Gaps = 7/420 (1%)

Query: 30  NGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGA 89
           NGIFS SE+AI++S++VRL++L  +G+  A + L L   P +F STVQIGITLI I +GA
Sbjct: 18  NGIFSGSEMAIVSSRKVRLEQLASRGNRQARTVLNLINAPNNFLSTVQIGITLIGILSGA 77

Query: 90  FGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAA 149
              ++L   LT   +   L++ ++  IS+ IVV  ITF SL+ GEL+PKRIA+   EK A
Sbjct: 78  IAGATLAERLTAIFQRIPLLKAYSQGISVGIVVGVITFLSLVMGELVPKRIALNAPEKIA 137

Query: 150 SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIGIF 209
             ++  M  L +   P V +L+ ST+ +L +  IK      +TEEEI  L R+G D+G+F
Sbjct: 138 CAVAQPMKLLSRFAAPIVNLLSASTDFLLKLLGIKVSDEPAVTEEEIKVLIRQGADLGLF 197

Query: 210 NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSI 269
            + E+ +  R  +L D+   +LMTPR ++ +++I+  + +NL +++DS Y+ FPV + S+
Sbjct: 198 EESEHEMVERVFRLGDRSVKSLMTPRKEIVWLDIESPLAENLQEVIDSGYSRFPVGRGSL 257

Query: 270 SKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLV 329
            + +G +   +L    +SN+    +D+ S +Q PL+I E    + +LE FK+     +LV
Sbjct: 258 DQYMGVVRGNSLLAACLSNQ---EVDLESFLQQPLYIAENTRALNVLEQFKQTGIHTALV 314

Query: 330 IDEYGELEGIITINDIIHSLIGDISNSYQEEIEFC---EDGSWIISASMTFDRFKELLSN 386
           IDEYG +EG++T++D++ +++G++ ++   E       EDGSW++   +  D FKEL S+
Sbjct: 315 IDEYGGIEGLVTLDDVVEAILGELPSAEDLEAPMAVQREDGSWLLDGLLAIDDFKELFSD 374

Query: 387 QVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446
            +  P   S+ YHTL GF+M  L  IP+ SE F W  +++EV+DM+  +++++LVT+L++
Sbjct: 375 -LPLPEISSQQYHTLGGFMMYSLKRIPQASEYFEWGRLRLEVVDMDGTRVDKVLVTVLDN 433

Source: Cyanothece sp. PCC 8801

Species: Cyanothece sp. PCC 8801

Genus: Cyanothece

Order: Chroococcales

Phylum: Cyanobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	447
UNIPROTKB|Q609I4	432	MCA1250 "CBS domain protein" [	0.926	0.958	0.371	7.6e-80
UNIPROTKB|Q8EDE1	439	SO_2815 "Transporter-like prot	0.930	0.947	0.334	2.3e-64
TIGR_CMR|SO_2815	439	SO_2815 "CBS domain protein" [	0.930	0.947	0.334	2.3e-64
UNIPROTKB|P0AE45	447	ytfL "predicted inner membrane	0.923	0.923	0.306	2.4e-53
UNIPROTKB|Q74EV6	444	GSU0853 "Transporter, DUF21, C	0.914	0.921	0.274	1.7e-50
TIGR_CMR|GSU_0853	444	GSU_0853 "CBS domain protein"	0.914	0.921	0.274	1.7e-50
UNIPROTKB|Q71W26	444	LMOf2365_2725 "CBS domain prot	0.917	0.923	0.275	3.7e-48
UNIPROTKB|Q9KLA9	437	VCA0837 "Hemolysin, putative"	0.914	0.935	0.285	1.4e-46
TIGR_CMR|VC_A0837	437	VC_A0837 "conserved hypothetic	0.914	0.935	0.285	1.4e-46
UNIPROTKB|Q8E9D3	438	hlyA "Hemolysin HlyA" [Shewane	0.926	0.945	0.285	1.3e-45

UNIPROTKB|Q609I4 MCA1250 "CBS domain protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 802 (287.4 bits), Expect = 7.6e-80, P = 7.6e-80
 Identities = 157/423 (37%), Positives = 272/423 (64%)

Query:    26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
             LIF+NG+F+MSE+AI++++R RL++  +KG  G L AL L+  P  F STVQ+GIT I +
Sbjct:    10 LIFVNGLFAMSEMAIVSARRSRLQQRADKGGTGELQALELAAQPSRFLSTVQVGITTIGV 69

Query:    86 FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
              NGA GE+S+ + L P +     +  +AHEISL + VF+IT+ SLI GEL+PKR+A+ ++
Sbjct:    70 LNGALGEASVSSQLEPILLTLPELAPYAHEISLTVTVFAITYLSLIIGELVPKRLALLHA 129

Query:   146 EK-AASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGF 204
             E  AA++  P+ L  L  + P VK+L++ST+ +L +   +  +   +TEEEI  L ++G 
Sbjct:   130 EAIAAAVARPMHLLSLIAL-PLVKLLSVSTDIVLRLLGARPVRQPSVTEEEIKLLLQQGT 188

Query:   205 DIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPV 264
               G+F ++E  L    L+LD +    +MTPR  V ++++  + E N   + D  +   P+
Sbjct:   189 LEGVFEEVEQKLVENILRLDSRKVGAIMTPRKDVVYLDVTKSYEANRGILTDHPHWIIPL 248

Query:   265 YKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKS 324
              +  +  ++G + TK +  ++++       ++   +   LF+P ++S MQLLE FK++  
Sbjct:   249 CRGGVDNVLGFVKTKDVLNRLLAGEKP---ELAELVTRALFVPNSLSLMQLLEHFKRSHL 305

Query:   325 ELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE---IEFCEDGSWIISASMTFDRFK 381
             + +LV+DEYGEL G++T+ D++ +++G I++   EE   +   EDGSW+I   +  +RFK
Sbjct:   306 QTALVVDEYGELTGLVTLTDVLEAIVGAIASETAEEEPQVSQREDGSWLIDGMLDIERFK 365

Query:   382 ELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLV 441
             +L       P + + N+HT+AGFVM  LG++PK++++F +++++ EV+DM+ N+++++LV
Sbjct:   366 QLFDLDA-LPEEETGNFHTMAGFVMLRLGNVPKVTDSFEFQDLRFEVVDMDRNRVDKILV 424

Query:   442 TIL 444
             T L
Sbjct:   425 TRL 427

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8EDE1 SO_2815 "Transporter-like protein HCC family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 143/428 (33%), Positives = 250/428 (58%)

Query:    24 IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLI 83
             I LI LNG+F+MSEIAI+T+++ RL  L   GS  A +AL L+E+P  F STVQIGIT I
Sbjct:     7 IGLIVLNGLFAMSEIAIVTARKSRLTALAHAGSSTAKAALKLAEDPTQFLSTVQIGITSI 66

Query:    84 SIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQ 143
              I NG FGES L   L+  ++ F L  D  +  S V+VV  +T+ S++ GEL+PKRI   
Sbjct:    67 GILNGIFGESILAEPLSLWLQTFGLSPDVTNIFSTVLVVIIVTYVSIVIGELVPKRIGQV 126

Query:   144 YSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREG 203
              +E  A I++  M+FL     PFV +L+ ST +++ +    ++ +D +T+E+I  + +EG
Sbjct:   127 SAESIACIMAKPMVFLAIATKPFVWMLSGSTHALMRLMGFSHRLDDNVTQEDIQAMLQEG 186

Query:   204 FDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263
                G+    E+ +     +LD++   +LM PR  + F++++  ++ NL  ++ S ++ FP
Sbjct:   187 SSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFP 246

Query:   264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNK 323
             V + ++  ++G ++ K L  + I+   +  +D+        F+P ++S M+LLE F+   
Sbjct:   247 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLVKNCN---FVPNSLSGMELLEHFRTTG 303

Query:   324 SELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFC-----EDGSWIISASMTFD 378
             S++  V+DEYG+L+G++T+ D++ +L G+    +QE++        EDGS ++   +   
Sbjct:   304 SQMVFVVDEYGDLKGLVTLQDMMDALTGEF---FQEDVNDQMVIKREDGSLLLDGLIPIF 360

Query:   379 RFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIER 438
               K+ L  +   P +    Y TL GF+M  LG IP+ ++       ++E++DM+  ++++
Sbjct:   361 DLKDALGIK-QLPNEEDGRYQTLNGFLMYELGKIPQTTDIVEVAGWRLEIMDMDGKRVDK 419

Query:   439 LLVTILND 446
             +L   L D
Sbjct:   420 VLAQKLPD 427

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_2815 SO_2815 "CBS domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 143/428 (33%), Positives = 250/428 (58%)

Query:    24 IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLI 83
             I LI LNG+F+MSEIAI+T+++ RL  L   GS  A +AL L+E+P  F STVQIGIT I
Sbjct:     7 IGLIVLNGLFAMSEIAIVTARKSRLTALAHAGSSTAKAALKLAEDPTQFLSTVQIGITSI 66

Query:    84 SIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQ 143
              I NG FGES L   L+  ++ F L  D  +  S V+VV  +T+ S++ GEL+PKRI   
Sbjct:    67 GILNGIFGESILAEPLSLWLQTFGLSPDVTNIFSTVLVVIIVTYVSIVIGELVPKRIGQV 126

Query:   144 YSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREG 203
              +E  A I++  M+FL     PFV +L+ ST +++ +    ++ +D +T+E+I  + +EG
Sbjct:   127 SAESIACIMAKPMVFLAIATKPFVWMLSGSTHALMRLMGFSHRLDDNVTQEDIQAMLQEG 186

Query:   204 FDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263
                G+    E+ +     +LD++   +LM PR  + F++++  ++ NL  ++ S ++ FP
Sbjct:   187 SSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFP 246

Query:   264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNK 323
             V + ++  ++G ++ K L  + I+   +  +D+        F+P ++S M+LLE F+   
Sbjct:   247 VCRNNVDDMVGIISAKQLLSESIAGERLELVDLVKNCN---FVPNSLSGMELLEHFRTTG 303

Query:   324 SELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFC-----EDGSWIISASMTFD 378
             S++  V+DEYG+L+G++T+ D++ +L G+    +QE++        EDGS ++   +   
Sbjct:   304 SQMVFVVDEYGDLKGLVTLQDMMDALTGEF---FQEDVNDQMVIKREDGSLLLDGLIPIF 360

Query:   379 RFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIER 438
               K+ L  +   P +    Y TL GF+M  LG IP+ ++       ++E++DM+  ++++
Sbjct:   361 DLKDALGIK-QLPNEEDGRYQTLNGFLMYELGKIPQTTDIVEVAGWRLEIMDMDGKRVDK 419

Query:   439 LLVTILND 446
             +L   L D
Sbjct:   420 VLAQKLPD 427

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P0AE45 ytfL "predicted inner membrane protein" [Escherichia coli K-12 (taxid:83333)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 131/427 (30%), Positives = 236/427 (55%)

Query:    26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
             LI ++  FSMSEI++  S++++LK L ++G+I A   L + ENP  FF+ VQIG+  ++I
Sbjct:    11 LIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAI 70

Query:    86 FNGAFGESSLVASLTPKIR-FFS--LMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAM 142
               G  G+    A+ +P     FS  +  + + ++S ++    +T   ++F +L PKRI M
Sbjct:    71 LGGIVGD----AAFSPAFHSLFSRYMSAELSEQLSFILSFSLVTGMFILFADLTPKRIGM 126

Query:   143 QYSEKAA-SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFR 201
                E  A  II+P M F L +  P V         I  IF +   + D IT ++IY +  
Sbjct:   127 IAPEAVALRIINP-MRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAVVE 185

Query:   202 EGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNY 261
              G   G+  K E+ L     +L+ +   + MTPR  V + ++ ++ +    K+ +  ++ 
Sbjct:   186 AGALAGVLRKQEHELIENVFELESRTVPSSMTPRENVIWFDLHEDEQSLKNKVAEHPHSK 245

Query:   262 FPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKK 321
             F V  + I  IIG +++K L  ++++N+S+  ++    I+  L +P+T++  + LE+FK 
Sbjct:   246 FLVCNEDIDHIIGYVDSKDLLNRVLANQSLA-LNSGVQIRNTLIVPDTLTLSEALESFKT 304

Query:   322 NKSELSLVIDEYGELEGIITINDIIHSLIGD-ISNSYQEEIEFCEDGSWIISASMTFDRF 380
                + +++++EY  + GIIT+ND++ +L+GD +    +E+I   ++ SW+I      D  
Sbjct:   305 AGEDFAVIMNEYALVVGIITLNDVMTTLMGDLVGQGLEEQIVARDENSWLIDGGTPIDDV 364

Query:   381 KELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLL 440
               +L     FP   S NY T+ GF+M  L  IPK +++  +   K EV+D++N +I++LL
Sbjct:   365 MRVLDID-EFPQ--SGNYETIGGFMMFMLRKIPKRTDSVKFAGYKFEVVDIDNYRIDQLL 421

Query:   441 VTILNDK 447
             VT ++ K
Sbjct:   422 VTRIDSK 428

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q74EV6 GSU0853 "Transporter, DUF21, CBS domain pair and CorC_HlyC domain-containing, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 116/423 (27%), Positives = 227/423 (53%)

Query:    26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
             LI  NG F+ SE+AII++++ R+ +L+E G   A     L  +P  F +TVQ+G+T++  
Sbjct:    11 LILGNGFFAGSELAIISARKGRIAQLVEAGDSRAQIVERLQNDPHRFLATVQVGVTVVGS 70

Query:    86 FNGAFGESSLVASLTPKIRFFSL--MRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQ 143
                A G ++ V S+ P +    +  +R  A  +++ + V  I++ SLIFGEL+PK + +Q
Sbjct:    71 LASAVGGAAAVQSVKPLLEAVPVDFIRHAAEPLAIGLAVVFISYLSLIFGELVPKTVGLQ 130

Query:   144 YSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKND-LITEEEIYKLFRE 202
             Y+++ A  ++  +  L K+ G  V  LTIS +++L +  IK + +   +T EE+  +  E
Sbjct:   131 YADQMALRVAKPISSLAKVAGVVVSFLTISNKAVLAMMGIKAEGSQAFVTREEVQHIVAE 190

Query:   203 GFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYF 262
             G + G+F+  E             C   +M PR ++  +++     + + ++LD+ Y+ +
Sbjct:   191 GHEAGVFSATEQEYIRNIFDFTHTCVREVMVPRTRMVALDLARPRMELVREVLDNMYSRY 250

Query:   263 PVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKN 322
             PVY++SI  ++G ++ K L  + +++       + S ++PP ++PE     +LL+  ++ 
Sbjct:   251 PVYRESIENVVGFIHGKDLLGRTVTDPEFA---MESIVRPPFYVPEGKKVNELLKEMQRL 307

Query:   323 KSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQ----EEIEFCEDGSWIISASMTFD 378
             +  ++LV+DEYG + G++T  D++  L+G+I + +       ++   DGS ++ A M+  
Sbjct:   308 RIHMALVVDEYGGISGLVTTEDLLEELVGEIEDEHDIGEPGTVQRLPDGSLLVDALMSIG 367

Query:   379 RFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIER 438
                +LL  ++   V     Y TLAG ++  LG  P+  E   W    +   ++    I +
Sbjct:   368 DLADLLKIKLEEDVP----YDTLAGLILDQLGRFPERGETVEWDRFSLICEEVKQTAIVK 423

Query:   439 LLV 441
             + +
Sbjct:   424 VRI 426

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0853 GSU_0853 "CBS domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 116/423 (27%), Positives = 227/423 (53%)

Query:    26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
             LI  NG F+ SE+AII++++ R+ +L+E G   A     L  +P  F +TVQ+G+T++  
Sbjct:    11 LILGNGFFAGSELAIISARKGRIAQLVEAGDSRAQIVERLQNDPHRFLATVQVGVTVVGS 70

Query:    86 FNGAFGESSLVASLTPKIRFFSL--MRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQ 143
                A G ++ V S+ P +    +  +R  A  +++ + V  I++ SLIFGEL+PK + +Q
Sbjct:    71 LASAVGGAAAVQSVKPLLEAVPVDFIRHAAEPLAIGLAVVFISYLSLIFGELVPKTVGLQ 130

Query:   144 YSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKND-LITEEEIYKLFRE 202
             Y+++ A  ++  +  L K+ G  V  LTIS +++L +  IK + +   +T EE+  +  E
Sbjct:   131 YADQMALRVAKPISSLAKVAGVVVSFLTISNKAVLAMMGIKAEGSQAFVTREEVQHIVAE 190

Query:   203 GFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYF 262
             G + G+F+  E             C   +M PR ++  +++     + + ++LD+ Y+ +
Sbjct:   191 GHEAGVFSATEQEYIRNIFDFTHTCVREVMVPRTRMVALDLARPRMELVREVLDNMYSRY 250

Query:   263 PVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKN 322
             PVY++SI  ++G ++ K L  + +++       + S ++PP ++PE     +LL+  ++ 
Sbjct:   251 PVYRESIENVVGFIHGKDLLGRTVTDPEFA---MESIVRPPFYVPEGKKVNELLKEMQRL 307

Query:   323 KSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQ----EEIEFCEDGSWIISASMTFD 378
             +  ++LV+DEYG + G++T  D++  L+G+I + +       ++   DGS ++ A M+  
Sbjct:   308 RIHMALVVDEYGGISGLVTTEDLLEELVGEIEDEHDIGEPGTVQRLPDGSLLVDALMSIG 367

Query:   379 RFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIER 438
                +LL  ++   V     Y TLAG ++  LG  P+  E   W    +   ++    I +
Sbjct:   368 DLADLLKIKLEEDVP----YDTLAGLILDQLGRFPERGETVEWDRFSLICEEVKQTAIVK 423

Query:   439 LLV 441
             + +
Sbjct:   424 VRI 426

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q71W26 LMOf2365_2725 "CBS domain protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 118/428 (27%), Positives = 229/428 (53%)

Query:    16 MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFST 75
             ++L L   + L  LN  F+ +E+A+++  + R+K   E G   A+    L ++P  F +T
Sbjct:    10 IILQLILIVVLTMLNAFFASAEMALVSLNKNRVKSQAETGDKKAVMLAKLVDDPSKFLAT 69

Query:    76 VQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGEL 135
             +Q+GITL   F+ A   +S+   L       S     A E+S+++V   +++ +L+FGEL
Sbjct:    70 IQVGITLAGFFSSASAATSIATRLESVFGGSSF----AKELSIIVVTIVLSYITLVFGEL 125

Query:   136 IPKRIAMQYSEKAASI-ISPLMLFLLKLMGPFVKILTISTESILDIFNI-KYKKNDLITE 193
              PKR+A+Q SEK A + + P+M   + L  PFVK L+ ST+ ++ +  + K   N+ +T 
Sbjct:   126 YPKRLALQKSEKIARVSVRPIMAVGVVLR-PFVKFLSFSTDILVKLTRMEKNTDNEKMTR 184

Query:   194 EEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK 253
             EE+  L   G   G+    E  +     ++D++ A  +M PR     I+ +   E+    
Sbjct:   185 EEMQLLIETGRRDGVIEVEELQMLRGVFEMDNKYAREVMVPRTDAFMIDAETESEELCDA 244

Query:   254 ILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTM 313
             +L  +++  PV+      ++G L+ K  F +   +    NID+ + ++   F  ET+   
Sbjct:   245 LLSENFSRVPVFTGDQDSVLGILHMKDFFAEARKS-GFENIDVKALVKDAYFAQETMFID 303

Query:   314 QLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNS---YQEEIEFCEDGSWI 370
              LL+  ++ ++++++++DEYG + GI+T+ D++  ++G+I +    + +E++  ++ ++I
Sbjct:   304 DLLKNMQRTRNQMAILMDEYGGVAGIVTVEDLLEEIVGEIDDENDVFSDEVKKIDETTFI 363

Query:   371 ISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFI--WKNIKIEV 428
             +   M  D F E+    V  P   SR   T+AGFV+T  G IP+  +  +  +  ++  V
Sbjct:   364 VEGRMPLDDFNEMF--HVELP---SRGVDTVAGFVLTLTGTIPEEDDKVVVEYGTLRFTV 418

Query:   429 IDMNNNKI 436
              +MN+ ++
Sbjct:   419 EEMNDARL 426

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KLA9 VCA0837 "Hemolysin, putative" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 120/421 (28%), Positives = 224/421 (53%)

Query:    26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
             LI  +  FSMSEI++  ++++RL+++ ++G   A   L L   P +FF+ VQIG+  ++I
Sbjct:    13 LIAASCFFSMSEISLAAARKIRLRQMADEGDERAERVLELQARPGNFFTVVQIGLNAVAI 72

Query:    86 FNGAFGESSLVASLTPKIRFFS---LMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAM 142
               G  GES+     TP IR      +  +   + S V+    +T   ++  +L+PKRIAM
Sbjct:    73 MGGIVGESAF----TPYIRALLEGLIPANLLSQASFVLSFMLVTSMFILIADLMPKRIAM 128

Query:   143 QYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFRE 202
                E+ A+ +   ML  + L+ PFV         +    ++  ++ND IT ++IY +   
Sbjct:   129 AMPERIATSLVGGMLICITLLKPFVWFFNGLANLLFRALSVPTERNDEITSDDIYAVMDA 188

Query:   203 GFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYF 262
             G + G+ +K E  +     ++      + MT R  + F+N+ D+ E    KI    +N F
Sbjct:   189 GAEAGVLDKGEQQMMESVFEMQSIPVTSAMTARESLVFLNLSDSEEVIKQKISQHPHNKF 248

Query:   263 PVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKN 322
              V    + +I G +++K L  ++I+ + + N+  ++ +     IP+T+S  + LE FK N
Sbjct:   249 LVCDGQLDQIKGYVDSKALLIRVINGQGM-NLKESNVVIGCPIIPDTLSLSEALEYFKIN 307

Query:   323 KSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDG-SWIISASMTFDRFK 381
             + + ++V++EY  + G++T ND+  +++G    +  EE     DG SW++          
Sbjct:   308 RVDFAVVMNEYALVVGVVTFNDLQSAVMGTWVLAEGEEQIVARDGNSWLVDGVTPITDVM 367

Query:   382 ELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLV 441
                + +  FP +  +NY T+AGF+M  L  IP+ +++ ++   K EV+D++N K+++LLV
Sbjct:   368 RSFAIE-EFPQQ--QNYETIAGFMMYMLRKIPRRTDSVVYAGYKFEVVDIDNYKVDQLLV 424

Query:   442 T 442
             +
Sbjct:   425 S 425

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_A0837 VC_A0837 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 120/421 (28%), Positives = 224/421 (53%)

Query:    26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
             LI  +  FSMSEI++  ++++RL+++ ++G   A   L L   P +FF+ VQIG+  ++I
Sbjct:    13 LIAASCFFSMSEISLAAARKIRLRQMADEGDERAERVLELQARPGNFFTVVQIGLNAVAI 72

Query:    86 FNGAFGESSLVASLTPKIRFFS---LMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAM 142
               G  GES+     TP IR      +  +   + S V+    +T   ++  +L+PKRIAM
Sbjct:    73 MGGIVGESAF----TPYIRALLEGLIPANLLSQASFVLSFMLVTSMFILIADLMPKRIAM 128

Query:   143 QYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFRE 202
                E+ A+ +   ML  + L+ PFV         +    ++  ++ND IT ++IY +   
Sbjct:   129 AMPERIATSLVGGMLICITLLKPFVWFFNGLANLLFRALSVPTERNDEITSDDIYAVMDA 188

Query:   203 GFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYF 262
             G + G+ +K E  +     ++      + MT R  + F+N+ D+ E    KI    +N F
Sbjct:   189 GAEAGVLDKGEQQMMESVFEMQSIPVTSAMTARESLVFLNLSDSEEVIKQKISQHPHNKF 248

Query:   263 PVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKN 322
              V    + +I G +++K L  ++I+ + + N+  ++ +     IP+T+S  + LE FK N
Sbjct:   249 LVCDGQLDQIKGYVDSKALLIRVINGQGM-NLKESNVVIGCPIIPDTLSLSEALEYFKIN 307

Query:   323 KSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDG-SWIISASMTFDRFK 381
             + + ++V++EY  + G++T ND+  +++G    +  EE     DG SW++          
Sbjct:   308 RVDFAVVMNEYALVVGVVTFNDLQSAVMGTWVLAEGEEQIVARDGNSWLVDGVTPITDVM 367

Query:   382 ELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLV 441
                + +  FP +  +NY T+AGF+M  L  IP+ +++ ++   K EV+D++N K+++LLV
Sbjct:   368 RSFAIE-EFPQQ--QNYETIAGFMMYMLRKIPRRTDSVVYAGYKFEVVDIDNYKVDQLLV 424

Query:   442 T 442
             +
Sbjct:   425 S 425

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8E9D3 hlyA "Hemolysin HlyA" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 122/428 (28%), Positives = 222/428 (51%)

Query:    26 LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
             LI  +  FSMSEIA+  S+++RL++L ++G   A   L L   P  FF+ VQIG+  ++I
Sbjct:    13 LIGASCFFSMSEIALAASRKIRLRQLADEGDARAEKVLHLQSYPGSFFTVVQIGLNAVAI 72

Query:    86 FNGAFGESSLVASLTPKIRFFS--LMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQ 143
               G  GES+         +F S  L      ++S ++    +T   ++  +L+PKRIAM 
Sbjct:    73 MGGIVGESAFRPYF---YQFLSSWLADPWLSQVSFLMSFLLVTSAFILVADLMPKRIAMA 129

Query:   144 YSEKAA-SIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFRE 202
               E+ A +++ P+ +  + ++ P V         I  +  I   +ND IT ++IY +   
Sbjct:   130 MPEQVALAVVGPMSV-CIAVLRPLVWFFNGMASGIFKLLQIPTARNDEITSDDIYAVMNA 188

Query:   203 GFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYF 262
             G + G+ +K E  +     ++      + MT R  + +  + D+ E    KI +  +  F
Sbjct:   189 GAEAGVLDKGEQQMMENVFEMQTVSVTSAMTARESLVYFLLQDSEEDIKRKIAEDPHTKF 248

Query:   263 PVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKN 322
              V    +  + G ++ K L  ++I+  +I   D TS +   L IP+T+S  + +E FK +
Sbjct:   249 LVCDGQLDMVKGFVDAKELLIRVINGENITLKD-TSLVHTSLIIPDTLSLSEAMEYFKNS 307

Query:   323 KSELSLVIDEYGELEGIITINDIIHSLIGDIS-NSYQEEIEFCEDGSWIISASMTFDRFK 381
             +++ ++V++EY  + GI+T ND+  +++G  S +  +E+I   +  SW++          
Sbjct:   308 RADFAVVMNEYALVVGIVTTNDLQRAVMGAWSLHESEEQIIARDSNSWLVDGVTPITDVM 367

Query:   382 ELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLV 441
                  +  FP   S+NY T+AGF+M  L  IPK ++   +   K EV+D+++ K+++LLV
Sbjct:   368 RAFGIE-EFPH--SQNYETIAGFMMYMLRKIPKRTDFVNYGGYKFEVVDIDSYKVDQLLV 424

Query:   442 TIL--NDK 447
             T +  N+K
Sbjct:   425 TRIDTNEK 432

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0AE46	YTFL_ECOL6	No assigned EC number	0.3076	0.9194	0.9194	yes	N/A
O05241	YUGS_BACSU	No assigned EC number	0.2537	0.8590	0.8951	yes	N/A
P44717	Y452_HAEIN	No assigned EC number	0.2614	0.9440	0.9768	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	447
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	1e-103
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	6e-53
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	3e-37
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	3e-31
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	4e-31
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	1e-30
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	5e-27
smart01091	78	smart01091, CorC_HlyC, Transporter associated doma	2e-17
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	6e-16
pfam03471	80	pfam03471, CorC_HlyC, Transporter associated domai	2e-14
pfam00571	57	pfam00571, CBS, CBS domain	1e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-05

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  313 bits (803), Expect = e-103
 Identities = 142/437 (32%), Positives = 256/437 (58%), Gaps = 19/437 (4%)

Query: 16  MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFST 75
           ++L+L   + LI L+  FS +E A+++ +R RL++L E+G+  A +AL L E    + ST
Sbjct: 3   LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKRAKAALKLIERLNRYLST 62

Query: 76  VQIGITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGEL 135
           VQ+GITL+S+  GA GE +L A L P +            +S  +    ITF  ++FGEL
Sbjct: 63  VQLGITLVSLLLGAVGEPALAALLEPLLEALG--------LSAALSFAIITFLHVVFGEL 114

Query: 136 IPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEE 195
           +PK IA++  EK A +I+P + F  +L+ P + +L     +IL +F ++  + + +T  E
Sbjct: 115 VPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTE 174

Query: 196 IY-KLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKI 254
              +L  E  + G+  + E  + +  L LDD+    +MTPR  +  +++ D +E+ +  I
Sbjct: 175 EELELVSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIELI 234

Query: 255 LDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQ 314
           L+S ++  PVY   +  IIG ++ K L + ++  +S  ++D+   ++PPLF+PET+S   
Sbjct: 235 LESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--DLDLRVLVRPPLFVPETLSLSD 292

Query: 315 LLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS----NSYQEEIEFCEDGSWI 370
           LLE F++ ++ +++V+DEYG +EG++T+ DII  ++G+I        +E+I   +D  W+
Sbjct: 293 LLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWL 352

Query: 371 ISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVID 430
           +   +  +  +ELL       +    +Y T+AG V++ LG IPK+ E+ +   ++ EV+D
Sbjct: 353 VDGRVPLEELEELL----GIDLDEEEDYDTIAGLVLSLLGRIPKVGESVVIGGLRFEVLD 408

Query: 431 MNNNKIERLLVTILNDK 447
           M+  +I+++L+  L DK
Sbjct: 409 MDGRRIDKVLIVRLKDK 425

Length = 429

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score =  182 bits (465), Expect = 6e-53
 Identities = 124/429 (28%), Positives = 212/429 (49%), Gaps = 26/429 (6%)

Query: 24  IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLI 83
           I LI ++  FS SE A+    R RL+ L ++G+ GA     L E P     T+ IG  L+
Sbjct: 10  IILIIISAFFSGSETALTALNRYRLRHLAKQGNRGAKRVEKLLEKPDRLIGTILIGNNLV 69

Query: 84  SIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQ 143
           +I       S+L   L   IR +        +  + I    +TF  L+F E++PK IA  
Sbjct: 70  NIL-----ASALATILG--IRLYG-------DAGVAIATGVLTFVILVFAEVLPKTIAAL 115

Query: 144 YSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYK--KNDLITEEEIYKLFR 201
           Y E+ A   S ++  L++L GP V +L   T  +L +  I      + L ++EE+     
Sbjct: 116 YPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVN 175

Query: 202 EGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNY 261
           E    G  NKI+ ++    L L++     +M PR ++  I+IDD  E+ + ++L S +  
Sbjct: 176 ESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTR 235

Query: 262 FPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKK 321
            P+Y+  +  IIG L+ + L + +         DI  A   P F+PE       L  F++
Sbjct: 236 IPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQR 295

Query: 322 NKSELSLVIDEYGELEGIITINDIIHSLIGDI---SNSYQEEIEFCEDGSWIISASMTF- 377
           NK  ++LV+DEYG+++G++T+ DI+  ++GD     ++  +E+    DGS+II  S    
Sbjct: 296 NKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVR 355

Query: 378 DRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIE 437
           D  + L     N P + +R   T+ G V+  L  IP+  +       +I+++ +  N+I+
Sbjct: 356 DLNRAL---DWNLPDEDAR---TINGLVLEELEEIPEEGQAVRIGGYRIDILKVQENRIK 409

Query: 438 RLLVTILND 446
           ++ +T L  
Sbjct: 410 QVKITPLKA 418

Length = 423

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  133 bits (338), Expect = 3e-37
 Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 14/188 (7%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           L+ L+  FS SE A+++  R RL++L E+G+ GA   L L  NP    +T+ +G TL +I
Sbjct: 9   LLLLSAFFSASETALVSLSRSRLEELAEEGNKGARRLLKLLANPDRLLATLLLGNTLANI 68

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
             GA                 +        + +++     T   L+FGE++PK +A +  
Sbjct: 69  LLGALAT-------------LAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNP 115

Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFD 205
           E+ A  ++P +  L+KL+ P V +L+  +  +L +F +K  +   +TEEE+  L  EG +
Sbjct: 116 ERIALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVK-PEGPAVTEEELRALVDEGEE 174

Query: 206 IGIFNKIE 213
            G+  + E
Sbjct: 175 EGVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score =  120 bits (304), Expect = 3e-31
 Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 11/232 (4%)

Query: 220 ALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTK 279
            + + D     +M PR ++  +  +  +++ L  I++S+++ FPV  +    + G L  K
Sbjct: 61  VMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAK 120

Query: 280 TLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI 339
            L   + S+    +I     ++P + +PE+    +LL+ F+  ++ +++VIDE+G + G+
Sbjct: 121 DLLPFMRSDAEPFDIK--ELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGL 178

Query: 340 ITINDIIHSLIGDISNSYQEE----IEFCEDGSWIISASMTFDRFKELLSNQVNFPVKIS 395
           +TI DI+  ++GDI + Y EE    I      +W + A    + F E      +F     
Sbjct: 179 VTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGT--HFS---D 233

Query: 396 RNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILNDK 447
               T+ G VM   GH+P   E       + +V   ++ ++ +L VT+ +D 
Sbjct: 234 EEVDTIGGLVMQAFGHLPARGEKIDIGGYQFKVARADSRRVIQLHVTVPDDS 285

Length = 293

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score =  123 bits (310), Expect = 4e-31
 Identities = 111/429 (25%), Positives = 203/429 (47%), Gaps = 33/429 (7%)

Query: 26  LIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISI 85
           ++ ++  FS SE  ++T  R RL+ + ++G+  A     L   P    S V IG  L++I
Sbjct: 1   MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNI 60

Query: 86  FNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYS 145
              A G  ++V            MR +  +  + I    +TF  L+F E++PK IA  Y 
Sbjct: 61  LASALG--TIVG-----------MRLYG-DAGVAIATGVLTFVVLVFAEVLPKTIAALYP 106

Query: 146 EKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYK--KNDLITEEEIYKLFREG 203
           EK A   S L+  L  LM P V +L   T  ++ +  IK     +  +++EE+  +  E 
Sbjct: 107 EKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVHES 166

Query: 204 FDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP 263
               I  + +  L S  L L+      +M PR ++  I+I+D+ +  L ++  S +    
Sbjct: 167 -RSQISRRNQDMLLS-VLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIV 224

Query: 264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNK 323
           +Y+ S+   I  L  +  ++ +   +     ++  A     F+PE       L  F++NK
Sbjct: 225 LYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEIYFVPEGTPLSTQLVKFQRNK 284

Query: 324 SELSLVIDEYGELEGIITINDIIHSLIGD----ISNSYQEEIEFCEDGSWIISASMTFDR 379
            ++ LV+DEYG+++G++T+ DI+  ++GD    +S +  EE+    DGS II  +     
Sbjct: 285 KKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTAN--- 341

Query: 380 FKELLSNQV---NFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKI 436
            +E+  N+    + P   +R   T+ G ++  L  IP            I+++D+ +N I
Sbjct: 342 VREI--NKAFNWHLPEDDAR---TVNGVILEALEEIPVAGTRVRIGEYDIDILDVQDNMI 396

Query: 437 ERLLVTILN 445
           +++ VT + 
Sbjct: 397 KQVKVTPVK 405

Length = 413

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score =  122 bits (307), Expect = 1e-30
 Identities = 107/428 (25%), Positives = 199/428 (46%), Gaps = 30/428 (7%)

Query: 24  IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQ-----I 78
           I L+ L+ + S SE+A  +     L    E  S      + L + P    +T+      I
Sbjct: 2   ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQIVINLLDRPKKLLATILIANNFI 61

Query: 79  GITLISIFNGAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPK 138
            I ++ +F  +  ++   +  T  +RF              I V  +TF  L+FGE++PK
Sbjct: 62  NIAIVLLFT-SLSDNLFGSFNTELLRFL-------------IEVVIVTFLILLFGEILPK 107

Query: 139 RIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYK 198
             A + + K A  ++  +  L K+  P    L   T  I        +K+++  ++    
Sbjct: 108 VYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHK--KFGKQKSNISVDQLSQA 165

Query: 199 LFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSS 258
           L  E  D     K E  +    +   +     +M PR+ +  ++I+ +  + + KI+++ 
Sbjct: 166 L--ELTDEEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENG 223

Query: 259 YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLET 318
           Y+  PVYK++I  I G L  K L   +  N+   N D  S ++ P F+PE      LL  
Sbjct: 224 YSRIPVYKETIDNITGVLYIKDLLPHL--NKK--NFDWQSLLREPYFVPENKKLDDLLRD 279

Query: 319 FKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEF---CEDGSWIISASM 375
           F++ K+ L++V+DEYG   G++T+ DII  ++GDIS+ + +E       +D +++     
Sbjct: 280 FQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKT 339

Query: 376 TFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNK 435
           +   F ++L  + +   ++     TLAGF++   G  PK  E   ++N +  +  M+  +
Sbjct: 340 SLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKITFENFEFTIEAMDKKR 399

Query: 436 IERLLVTI 443
           I+++ VTI
Sbjct: 400 IKQVKVTI 407

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score =  104 bits (261), Expect = 5e-27
 Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 2/109 (1%)

Query: 238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDIT 297
           +  ++ DD +E+ L  I +S ++ FPVY   +  IIG ++ K L + +       ++D+ 
Sbjct: 3   IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE--DLDLR 60

Query: 298 SAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
             ++PPLF+PE+     LLE  +K +S +++V+DEYG   G++T+ DI+
Sbjct: 61  DLLRPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDIL 109

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|215020 smart01091, CorC_HlyC, Transporter associated domain

 Score = 76.7 bits (190), Expect = 2e-17
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
           +DGS+++      D   ELL   ++ P      Y TL G V+  LG IP++ ++     +
Sbjct: 4   DDGSYLVDGRTPIDDLNELL--GLDLP---EEEYDTLGGLVLEELGRIPEVGDSVEIGGL 58

Query: 425 KIEVIDMNNNKIERLLVTIL 444
           + EV++++  +I+++ VT  
Sbjct: 59  RFEVLEVDGRRIDKVRVTRP 78

This small domain is found in a family of proteins with the DUF21 domain and two CBS domains with this domain found at the C-terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates. Length = 78

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 77.5 bits (191), Expect = 6e-16
 Identities = 54/226 (23%), Positives = 109/226 (48%), Gaps = 11/226 (4%)

Query: 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284
           DQ    +M PR ++  +  +  +++ L  I++S+++ FPV  +    I G L  K L   
Sbjct: 66  DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPF 125

Query: 285 IISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
           + S+    ++D    ++  + +PE+    ++L+ F+  +  +++VIDE+G + G++TI D
Sbjct: 126 MRSDAEAFSMD--KVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIED 183

Query: 345 IIHSLIGDISNSYQEE----IEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHT 400
           I+  ++G+I + Y EE           +W + A  + + F E      +          T
Sbjct: 184 ILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFS-----DEEVDT 238

Query: 401 LAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446
           + G VM   GH+P   E       + +V   ++ +I ++ V I +D
Sbjct: 239 IGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQVHVKIPDD 284

Length = 292

>gnl|CDD|217581 pfam03471, CorC_HlyC, Transporter associated domain

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 7/82 (8%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFI--WK 422
           +DGS+++      D   ELL   ++ P     +Y TLAG V+  LG IP++ +       
Sbjct: 4   DDGSYLVDGRAPLDDLNELL--GLDLP---EEDYDTLAGLVLELLGRIPEVGDKVTVELG 58

Query: 423 NIKIEVIDMNNNKIERLLVTIL 444
            ++  V++++  +I+++ VT L
Sbjct: 59  GLRFTVLEVDGRRIKKVRVTKL 80

This small domain is found in a family of proteins with the pfam01595 domain and two CBS domains with this domain found at the C-terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates. Length = 80

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
             + +P   S  + LE  ++N      V+DE G+L GI+T+ D++ +L+ 
Sbjct: 8   DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALLE 57

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 19/109 (17%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 240 FINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITS- 298
            ++ DD + + L  +L+   +  PV      +++G +  + L + +        + +   
Sbjct: 5   TVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDV 63

Query: 299 AIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347
             +  + +    S  +  E   ++      V+D+ G L GI+T +DI+ 
Sbjct: 64  MTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	447
PRK11573	413	hypothetical protein; Provisional	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	100.0
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	100.0
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	100.0
KOG2118|consensus	498		99.9
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.8
PF03471	81	CorC_HlyC: Transporter associated domain; InterPro	99.78
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.77
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.73
COG2524	294	Predicted transcriptional regulator, contains C-te	99.66
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.63
COG4109	432	Predicted transcriptional regulator containing CBS	99.61
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.56
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.54
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.54
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.53
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.53
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.53
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.52
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.52
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.5
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.5
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	99.5
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.5
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.49
COG3620	187	Predicted transcriptional regulator with C-termina	99.49
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.49
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.49
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.48
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	99.48
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.48
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.48
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.48
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.47
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.47
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.47
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.47
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.46
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.46
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.46
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.46
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.46
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.45
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.45
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.45
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.44
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.44
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.44
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.44
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.43
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.43
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.43
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.43
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.43
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.42
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.42
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.42
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.42
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.41
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.41
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.41
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.4
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.4
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.4
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.4
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.4
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.39
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.39
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.39
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.39
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.39
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.38
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.38
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.38
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.37
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.37
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.37
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.36
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.34
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.33
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.33
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.32
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.32
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.3
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.3
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.28
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	99.25
COG0517	117	FOG: CBS domain [General function prediction only]	99.22
COG2905	610	Predicted signal-transduction protein containing c	99.11
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.07
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.02
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.87
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.69
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.66
KOG1764|consensus	381		98.62
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.5
KOG0474|consensus	762		98.47
KOG2550|consensus	503		98.43
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.09
KOG0475|consensus	696		97.94
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.93
COG2524	294	Predicted transcriptional regulator, contains C-te	97.91
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.81
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.79
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.78
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.73
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.71
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.71
KOG1764|consensus	381		97.68
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.68
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.67
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.66
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.65
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	97.63
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.55
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.55
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.53
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.52
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.51
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.51
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.51
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.5
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.49
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.49
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.49
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.49
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.49
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.49
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.48
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.47
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.47
COG3620	187	Predicted transcriptional regulator with C-termina	97.44
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.43
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.43
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.4
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.4
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.38
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.37
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.37
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.37
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.35
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.35
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.35
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.34
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.34
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.32
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.3
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.3
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.3
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.29
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.29
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.29
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.29
PRK14869	546	putative manganese-dependent inorganic pyrophospha	97.28
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.26
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.26
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.25
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.24
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.24
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.23
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.23
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.23
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.22
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.21
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.21
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.21
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.2
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.18
COG0517	117	FOG: CBS domain [General function prediction only]	97.18
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.16
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.16
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.15
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.13
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.13
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.12
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.08
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.07
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.06
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.06
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.05
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.05
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.01
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	96.98
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	96.97
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	96.92
PRK11573	413	hypothetical protein; Provisional	96.89
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	96.85
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	96.66
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.59
COG2905	610	Predicted signal-transduction protein containing c	96.57
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.52
COG1253	429	TlyC Hemolysins and related proteins containing CB	96.51
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.37
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	96.2
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	96.16
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.14
COG4109	432	Predicted transcriptional regulator containing CBS	95.72
PRK05326	562	potassium/proton antiporter; Reviewed	94.88
KOG2550|consensus	503		94.67
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	94.64
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.87
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	92.55
KOG0476|consensus	931		90.47
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	84.2

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=7.4e-86  Score=675.86  Aligned_cols=398  Identities=25%  Similarity=0.423  Sum_probs=361.6

Q ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2372          27 IFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKIRFF  106 (447)
Q Consensus        27 l~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l~~~~~~~~~~~  106 (447)
                      +++||||||+|+|++|+++.||+.++++|+++|++++++++||+++|+|+|+|||++|++++++++.....    ++   
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~----~~---   74 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMR----LY---   74 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh---
Confidence            57899999999999999999999999999999999999999999999999999999999999876543211    11   


Q ss_pred             cccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccC
Q psy2372         107 SLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYK  186 (447)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~~~~rl~g~~~~  186 (447)
                      +       ..+..++++++|+++++|||++||++|.+||+++|++++||+++++++++|++|+++++++.++|++|.++.
T Consensus        75 ~-------~~~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~  147 (413)
T PRK11573         75 G-------DAGVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTD  147 (413)
T ss_pred             h-------hhHHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            1       134567778899999999999999999999999999999999999999999999999999999999998764


Q ss_pred             C--CCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEE
Q psy2372         187 K--NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPV  264 (447)
Q Consensus       187 ~--~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV  264 (447)
                      .  ...+|++||+.+++.+.+  .++++|++|++|+++|++.+|+|+|+||+++++++.+++++++++.+.+++|||+||
T Consensus       148 ~~~~~~~s~eEl~~lv~~~~~--~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PV  225 (413)
T PRK11573        148 IVVSGALSKEELRTIVHESRS--QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVL  225 (413)
T ss_pred             ccCCCCCCHHHHHHHHHHHhh--hcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEE
Confidence            2  357899999999998876  589999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHH
Q psy2372         265 YKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND  344 (447)
Q Consensus       265 ~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~D  344 (447)
                      |+++.|+++|+++.||++....++.......+.+++|++.+||+++++.++++.|++++.|+|+|+||||++.|+||++|
T Consensus       226 y~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleD  305 (413)
T PRK11573        226 YRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVED  305 (413)
T ss_pred             EcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHH
Confidence            99888999999999999976543222111345578899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccc-ccc--c-ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEE
Q psy2372         345 IIHSLIGDI-SNS--Y-QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFI  420 (447)
Q Consensus       345 Ile~i~gei-~e~--~-~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~  420 (447)
                      |+|+++|+| ||+  + .+.+.+.++|+|+++|+++++|+++.+|++  +|+   ++|+|+|||+++++|++|++||+++
T Consensus       306 ilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~d~~~~l~~~--l~~---~~~~Tl~G~i~~~lg~iP~~Ge~~~  380 (413)
T PRK11573        306 ILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTANVREINKAFNWH--LPE---DDARTVNGVILEALEEIPVAGTRVR  380 (413)
T ss_pred             HHHHHhCCCCcccCcccccceEEecCCEEEEEeeeEHHHHHHHhCCC--CCC---CCCeeHHHHHHHHhCcCCCCCCEEE
Confidence            999999999 874  2 345788899999999999999999999999  883   3799999999999999999999999


Q ss_pred             EcCEEEEEEEeecCeeeEEEEEecC
Q psy2372         421 WKNIKIEVIDMNNNKIERLLVTILN  445 (447)
Q Consensus       421 ~~~~~f~v~~~~~~ri~~v~v~~~~  445 (447)
                      ++||+|+|.+++++||.+|++++.+
T Consensus       381 ~~~~~f~V~~~~~~rI~~v~v~~~~  405 (413)
T PRK11573        381 IGEYDIDILDVQDNMIKQVKVTPVK  405 (413)
T ss_pred             ECCEEEEEEEecCCeEEEEEEEECC
Confidence            9999999999999999999998754

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=8.5e-85  Score=668.10  Aligned_cols=401  Identities=25%  Similarity=0.404  Sum_probs=366.6

Q ss_pred             HHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372          24 IRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVASLTPKI  103 (447)
Q Consensus        24 ~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l~~~~~~~~  103 (447)
                      ++|+++||||||+|+|++|+++.|++.++++|+++|++++++++||+++|+|+|+|||++|++++++++..+...    +
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~----~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNL----F   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence            567899999999999999999999999999999999999999999999999999999999999998876654433    2


Q ss_pred             hhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2372         104 RFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESILDIFNI  183 (447)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~~~~rl~g~  183 (447)
                      ..++     .+++++.++++++|+++++|||++||++|.+||++++++++||+++++++++|++|+++++++.+++++|.
T Consensus        78 ~~~~-----~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~  152 (408)
T TIGR03520        78 GSFN-----TELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGK  152 (408)
T ss_pred             hhcc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            2111     22356677788999999999999999999999999999999999999999999999999999999999997


Q ss_pred             ccCCCCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         184 KYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       184 ~~~~~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ++   ..+|+||++.+++.+.++| ++++|++|++|+++|++++|+|+|+||.++++++.+++++++++.+.+++|||+|
T Consensus       153 ~~---~~~t~eEl~~lv~~~~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~P  228 (408)
T TIGR03520       153 QK---SNISVDQLSQALELTDEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIP  228 (408)
T ss_pred             CC---CCCCHHHHHHHHHhHhhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEE
Confidence            64   4589999999999999989 5899999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHH
Q psy2372         264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN  343 (447)
Q Consensus       264 V~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~  343 (447)
                      ||+++.|+++|+++.+|++....+ ..   .+++++|+++.+||+++++.++++.|++++.|+++|+||||+++|+||++
T Consensus       229 V~~~~~d~ivGiv~~kDll~~~~~-~~---~~l~~~~~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~e  304 (408)
T TIGR03520       229 VYKETIDNITGVLYIKDLLPHLNK-KN---FDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLE  304 (408)
T ss_pred             EEcCCCCceEEEEEHHHHHhHhcc-CC---CCHHHHcCCCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHH
Confidence            999877999999999999975532 22   56899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccc-ccc--cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCC--cCCCCcccHhHHHHhhcCCCCCCCcE
Q psy2372         344 DIIHSLIGDI-SNS--YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPV--KISRNYHTLAGFVMTFLGHIPKISEN  418 (447)
Q Consensus       344 DIle~i~gei-~e~--~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~--~~~~~~~Tl~G~i~~~lg~iP~~g~~  418 (447)
                      |++|+++|++ ||+  +++.+.+.++|+|+++|+++++|+++.+|++  +|.  +++++|+|+|||+++++||+|++||+
T Consensus       305 Dileeivgei~de~d~~~~~i~~~~~~~~~v~G~~~l~~l~~~l~~~--~~~~~~~~~~~~Tl~G~i~~~l~~iP~~G~~  382 (408)
T TIGR03520       305 DIIEEIVGDISDEFDDEDLIYSKIDDNNYVFEGKTSLKDFYKILKLE--EDMFDEVKGEAETLAGFLLEISGGFPKKGEK  382 (408)
T ss_pred             HHHHHHhCCCCCcCCcCccceEEeCCCeEEEEeccCHHHHHHHhCCC--ccccCCcCCCCccHHHHHHHHhCcCCCCCCE
Confidence            9999999999 874  5556788899999999999999999999998  652  11357999999999999999999999


Q ss_pred             EEEcCEEEEEEEeecCeeeEEEEEe
Q psy2372         419 FIWKNIKIEVIDMNNNKIERLLVTI  443 (447)
Q Consensus       419 ~~~~~~~f~v~~~~~~ri~~v~v~~  443 (447)
                      +.++||+|+|.+++++||.+|++++
T Consensus       383 ~~~~~~~f~V~~~~~~rI~~v~v~~  407 (408)
T TIGR03520       383 ITFENFEFTIEAMDKKRIKQVKVTI  407 (408)
T ss_pred             EEECCEEEEEEEccCCeEEEEEEEE
Confidence            9999999999999999999999976

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.4e-86  Score=637.24  Aligned_cols=411  Identities=28%  Similarity=0.485  Sum_probs=382.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372          16 MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSL   95 (447)
Q Consensus        16 ~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l   95 (447)
                      .|..++++++|+++||||||+|||++++||.|+++++++|+++||++.|++++|+++++|+++|||++|++++++++...
T Consensus         2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~Akrv~kLL~k~drlig~iLIGNNLvNilasalaT~~~   81 (423)
T COG4536           2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRGAKRVEKLLEKPDRLIGTILIGNNLVNILASALATILG   81 (423)
T ss_pred             cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchhhHHHHHHhcCchheeeeeeecccHHHHHHHHHHHHHH
Confidence            36678888999999999999999999999999999999999999999999999999999999999999999998876543


Q ss_pred             HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy2372          96 VASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTE  175 (447)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~  175 (447)
                      -.+    +   |       ..++.++++++|+++++|+|++||++|+.|||+++...++++..+.++|+|++|+++++++
T Consensus        82 irl----~---G-------d~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~  147 (423)
T COG4536          82 IRL----Y---G-------DAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITR  147 (423)
T ss_pred             HHH----h---c-------cchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            222    1   2       1246788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccCC--CCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHH
Q psy2372         176 SILDIFNIKYKK--NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK  253 (447)
Q Consensus       176 ~~~rl~g~~~~~--~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~  253 (447)
                      .++|+||++.+.  ....|.||++.++.+++++|...+.+++|+-+++++++++|.|+|+||.++..++.+++.+++++.
T Consensus       148 ~llrl~gi~~~~~~~~~~s~EElR~~v~~~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~q  227 (423)
T COG4536         148 RLLRLLGINLDQAVSQLSSKEELRTAVNESGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQ  227 (423)
T ss_pred             HHHHHhCcCcccccccccCHHHHHHHHHHhhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHHHHHHH
Confidence            999999999875  467899999999999999999988899999999999999999999999999999999999999999


Q ss_pred             HHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC
Q psy2372         254 ILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEY  333 (447)
Q Consensus       254 ~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~  333 (447)
                      +.++.|+|+|+|+++.|+++|++|.||+++++.+.++....++..+.++|+|||+++++.+.|..|++++.|++.|||||
T Consensus       228 l~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY  307 (423)
T COG4536         228 LLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY  307 (423)
T ss_pred             HhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc
Confidence            99999999999999999999999999999999876644345566666899999999999999999999999999999999


Q ss_pred             CCEEEEEeHHHHHHHHhccc-ccc--cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcC
Q psy2372         334 GELEGIITINDIIHSLIGDI-SNS--YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLG  410 (447)
Q Consensus       334 G~~iGiVT~~DIle~i~gei-~e~--~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg  410 (447)
                      |.+.|+||+|||+||++|++ ||+  ..+.+.+.+||+|+++|+++++|+||.||++  +|+   ++..|++|++++++.
T Consensus       308 G~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~iidGs~~iRdlNr~l~W~--Lp~---e~a~TinGLvle~le  382 (423)
T COG4536         308 GDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFIIDGSANVRDLNRALDWN--LPD---EDARTINGLVLEELE  382 (423)
T ss_pred             CcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEEEeCCCcHHHHHHhcCCC--CCC---CcchhHHHHHHHHHH
Confidence            99999999999999999999 885  5667888999999999999999999999999  995   368999999999999


Q ss_pred             CCCCCCcEEEEcCEEEEEEEeecCeeeEEEEEecC
Q psy2372         411 HIPKISENFIWKNIKIEVIDMNNNKIERLLVTILN  445 (447)
Q Consensus       411 ~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~  445 (447)
                      +||+.|+.|+++|++|+|++++.|||++||+.+.+
T Consensus       383 ~IP~~~~~~~i~~~~~~Il~~~~N~I~~vri~~~~  417 (423)
T COG4536         383 EIPEEGQAVRIGGYRIDILKVQENRIKQVKITPLK  417 (423)
T ss_pred             hCCCCCeEEEEcCEEEEEEehhhcceeeEEEEecC
Confidence            99999999999999999999999999999999875

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=3.9e-80  Score=638.71  Aligned_cols=416  Identities=34%  Similarity=0.648  Sum_probs=381.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372          16 MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSL   95 (447)
Q Consensus        16 ~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l   95 (447)
                      ++..++++++|+++|||||++|+|++|++|.|+++++++|+++|+.++++.++|+.+++++|+|||+++++.|++++.++
T Consensus         3 ~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~~~~~~   82 (429)
T COG1253           3 LILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKRAKAALKLIERLNRYLSTVQLGITLVSLLLGAVGEPAL   82 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHhHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy2372          96 VASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTE  175 (447)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~  175 (447)
                      +..+.+++..++++     +   ++.++++|+++++|||++||++|.++|++++++.+|++++++++++|++|+++.+++
T Consensus        83 ~~~l~~~~~~~~~~-----~---~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~  154 (429)
T COG1253          83 AALLEPLLEALGLS-----A---ALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIAN  154 (429)
T ss_pred             HHHHHHHhhhccch-----h---HHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888877655543     1   223788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccCC--CCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHH
Q psy2372         176 SILDIFNIKYKK--NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK  253 (447)
Q Consensus       176 ~~~rl~g~~~~~--~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~  253 (447)
                      .++|++|.++..  +...++++++ +++.+.+.|.++++|++|++|+++|++.+|+++|+||+++++++.+.+++++.+.
T Consensus       155 ~il~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~  233 (429)
T COG1253         155 AILRLFGVEPVEEEALTSTEEELE-LVSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVEELIEL  233 (429)
T ss_pred             HHHHHcCCCCCCccccCccHHHHH-HHHhHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHHHHHHH
Confidence            999999988643  3456788888 9999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC
Q psy2372         254 ILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEY  333 (447)
Q Consensus       254 ~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~  333 (447)
                      +.+++|||+|||+++.|+++|++|.||++....+++.  .......++++++||+++++.++|++||+++.|+|+|+|||
T Consensus       234 ~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~--~~~~~~~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEy  311 (429)
T COG1253         234 ILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS--DLDLRVLVRPPLFVPETLSLSDLLEEFREERTHMAIVVDEY  311 (429)
T ss_pred             HHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc--ccchhhcccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEcC
Confidence            9999999999999888999999999999998876532  13344455799999999999999999999999999999999


Q ss_pred             CCEEEEEeHHHHHHHHhccc-ccc---cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhc
Q psy2372         334 GELEGIITINDIIHSLIGDI-SNS---YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFL  409 (447)
Q Consensus       334 G~~iGiVT~~DIle~i~gei-~e~---~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~l  409 (447)
                      |++.|+||++||+|+++||+ ||+   +++.+.+.++++|+++|.++++|+++.+|++  +|  ++++|+|+|||+++++
T Consensus       312 G~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~~~v~G~~~l~e~~~~l~~~--~~--~~~~~~Ti~G~v~~~l  387 (429)
T COG1253         312 GGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDGWLVDGRVPLEELEELLGID--LD--EEEDYDTIAGLVLSLL  387 (429)
T ss_pred             CCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCcEEEeccccHHHHHHHhCCC--Cc--ccCCcccHHHHHHHHh
Confidence            99999999999999999999 874   3567777766669999999999999999999  74  3568999999999999


Q ss_pred             CCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEEecCC
Q psy2372         410 GHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND  446 (447)
Q Consensus       410 g~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~~  446 (447)
                      ||+|++||.+.+++++|+|++++++||++|+|+|.++
T Consensus       388 g~iP~~g~~~~~~~~~~~V~~~~~~rI~~v~i~~~~~  424 (429)
T COG1253         388 GRIPKVGESVVIGGLRFEVLDMDGRRIDKVLIVRLKD  424 (429)
T ss_pred             CcCCCCCCEEEEcCCeEEEEEccCCcEEEEEEEEcCC
Confidence            9999999999999999999999999999999998763

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=100.00  E-value=1.6e-51  Score=404.22  Aligned_cols=256  Identities=21%  Similarity=0.423  Sum_probs=234.9

Q ss_pred             HHHhcCccCCCCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhC
Q psy2372         178 LDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDS  257 (447)
Q Consensus       178 ~rl~g~~~~~~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~  257 (447)
                      .+++|.++     .|++||+.+++++.++|.++++|+++++++++|++.+|+++|+||.++++++.+++++++.+.+.++
T Consensus        24 ~~~~~~~~-----~t~eEl~~l~~~~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~   98 (292)
T PRK15094         24 SQLFHGEP-----KNRDELLALIRDSEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIES   98 (292)
T ss_pred             HHHcCCCC-----CCHHHHHHHHHhHhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhc
Confidence            34566543     4899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEE
Q psy2372         258 SYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELE  337 (447)
Q Consensus       258 ~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~i  337 (447)
                      +|+++|||+++.|+++|+++.+|++.....+..  ...+.++|+++.++++++++.++++.|++++.+++||+||||+++
T Consensus        99 ~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~--~~~l~~l~r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~vi  176 (292)
T PRK15094         99 AHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE--AFSMDKVLRQAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVS  176 (292)
T ss_pred             CCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC--cCCHHHHcCCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEE
Confidence            999999998766899999999999976543222  145899999999999999999999999999999999999999999


Q ss_pred             EEEeHHHHHHHHhccc-ccc--c-ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCC
Q psy2372         338 GIITINDIIHSLIGDI-SNS--Y-QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIP  413 (447)
Q Consensus       338 GiVT~~DIle~i~gei-~e~--~-~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP  413 (447)
                      |+||++|++++++|+| ||+  . +..+.+.++|+|+++|+++++|+++.+|++  +|.   ++|+|+|||+++++|++|
T Consensus       177 GiVTleDIle~ivGei~de~d~~~~~~i~~~~~~~~~v~G~~~l~dl~~~l~~~--l~~---~~~~Tl~G~i~~~l~~iP  251 (292)
T PRK15094        177 GLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTH--FSD---EEVDTIGGLVMQAFGHLP  251 (292)
T ss_pred             EEeEHHHHHHHHhCCCccccccccccccEEeCCCeEEEEeccCHHHHHHHhCCC--CCC---CCCccHHHHHHHHhCcCC
Confidence            9999999999999999 874  2 345888999999999999999999999999  873   479999999999999999


Q ss_pred             CCCcEEEEcCEEEEEEEeecCeeeEEEEEecC
Q psy2372         414 KISENFIWKNIKIEVIDMNNNKIERLLVTILN  445 (447)
Q Consensus       414 ~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~  445 (447)
                      ++||+++|+||+|+|++++++||.+|+|++.+
T Consensus       252 ~~Gd~i~~~~~~f~V~~~~~~rI~~v~v~~~~  283 (292)
T PRK15094        252 ARGETIDIDGYQFKVAMADSRRIIQVHVKIPD  283 (292)
T ss_pred             CCCCEEEECCEEEEEEEccCCeEEEEEEEECC
Confidence            99999999999999999999999999998865

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.2e-50  Score=365.16  Aligned_cols=258  Identities=23%  Similarity=0.448  Sum_probs=240.4

Q ss_pred             HHHHHhcCccCCCCCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHH
Q psy2372         176 SILDIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKIL  255 (447)
Q Consensus       176 ~~~rl~g~~~~~~~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~  255 (447)
                      ++.++|..+|     -+++||..+++.+++.+.++++-+.|++++++..+.+|+|+|.||+++++++.+.++.+++..+.
T Consensus        22 L~~~~f~gEp-----knr~eLl~liRdse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~ii   96 (293)
T COG4535          22 LLSQLFHGEP-----KNREELLELIRDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVII   96 (293)
T ss_pred             HHHHHhcCCC-----cCHHHHHHHHHHhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHH
Confidence            3335555444     57999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCC
Q psy2372         256 DSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGE  335 (447)
Q Consensus       256 ~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~  335 (447)
                      ++.||||||+.++.|++.|++..|||++.+..+...  ..+++++||..+||++..+...|+.||.++.|||+|+||||+
T Consensus        97 esaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~--F~i~~lLRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGg  174 (293)
T COG4535          97 ESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEP--FDIKELLRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGG  174 (293)
T ss_pred             HhccccCCcccCCchhhhhhhhHHHHHHHhcCCccc--ccHHHhcccceecccchhHHHHHHHHHhhcCceEEEEeccCC
Confidence            999999999998899999999999999987665443  789999999999999999999999999999999999999999


Q ss_pred             EEEEEeHHHHHHHHhccc-ccc---cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCC
Q psy2372         336 LEGIITINDIIHSLIGDI-SNS---YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGH  411 (447)
Q Consensus       336 ~iGiVT~~DIle~i~gei-~e~---~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~  411 (447)
                      +.|+||.+||+|.|+|+| ||+   ++..+.+.++++|.|.|.++|+|||+.||.+  +++   +++||+||++++.+|+
T Consensus       175 VsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~~~~~VrALT~IedFNe~F~t~--FsD---eevDTIGGLVm~afGh  249 (293)
T COG4535         175 VSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSRHTWRVRALTEIEDFNEAFGTH--FSD---EEVDTIGGLVMQAFGH  249 (293)
T ss_pred             eeeeEEHHHHHHHHhcccccccchhhhhhhHhhcCCceEEEecccHHHHHHHhcCC--CCh---hhhhhhhHHHHHHhcc
Confidence            999999999999999999 884   3556889999999999999999999999999  974   4799999999999999


Q ss_pred             CCCCCcEEEEcCEEEEEEEeecCeeeEEEEEecC
Q psy2372         412 IPKISENFIWKNIKIEVIDMNNNKIERLLVTILN  445 (447)
Q Consensus       412 iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~  445 (447)
                      .|+.||++.++||.|+|...+.+|+..++++.++
T Consensus       250 LP~RGE~i~i~~~~FkV~~ADsRrv~~l~vt~~~  283 (293)
T COG4535         250 LPARGEKIDIGGYQFKVARADSRRVIQLHVTVPD  283 (293)
T ss_pred             CCCCCCEEEEcceEEEEeecccceEEEEEEecCC
Confidence            9999999999999999999999999999998775

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=100.00  E-value=9e-32  Score=247.30  Aligned_cols=182  Identities=32%  Similarity=0.512  Sum_probs=164.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcchHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372          19 SLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIGALSALILSENPIHFFSTVQIGITLISIFNGAFGESSLVAS   98 (447)
Q Consensus        19 ~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~a~~~~~l~~~~~~~l~tilign~~~~~~~~~~~~~~l~~~   98 (447)
                      .++++++|+++|||||++|+|++++|+.+++.++++|+++++++.++++||+++++|+++||+++|++.++++...+...
T Consensus         2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~~a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~~~~~   81 (183)
T PF01595_consen    2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDKRARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVLASNL   81 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999999999999999999999999999999999999999999999998766554332


Q ss_pred             HHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2372          99 LTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKILTISTESIL  178 (447)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~~~~~~~~~~  178 (447)
                      ++.             +.+..++++++++++++|||++||++|.+||++++.+.+|++++++++++|+++++.++++.++
T Consensus        82 ~~~-------------~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~  148 (183)
T PF01595_consen   82 FGP-------------WWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKIL  148 (183)
T ss_pred             Hhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            221             1356677788899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCccCCCCCCCHHHHHHHHHhchhcCccchHH
Q psy2372         179 DIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIE  213 (447)
Q Consensus       179 rl~g~~~~~~~~~s~~el~~lv~~~~~~g~l~~~E  213 (447)
                      +.+|.+.+++..+|+||+++++++++++|.++++|
T Consensus       149 ~~~~~~~~~~~~~s~eel~~lv~~~~e~G~i~~~E  183 (183)
T PF01595_consen  149 KLFGIENEEDPAVSEEELRSLVEEGEEEGVIEEEE  183 (183)
T ss_pred             HHhCCCccccCCCCHHHHHHHHHhHHHCCCCCCCC
Confidence            99998874467899999999999999999999876

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>KOG2118|consensus

Probab=99.90  E-value=1.1e-24  Score=227.01  Aligned_cols=312  Identities=18%  Similarity=0.278  Sum_probs=251.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcc-----hHHHHHhhcCchhhHHHHHHHHHHHHHH-HHH
Q psy2372          16 MVLSLSPGIRLIFLNGIFSMSEIAIITSKRVRLKKLIEKGSIG-----ALSALILSENPIHFFSTVQIGITLISIF-NGA   89 (447)
Q Consensus        16 ~~~~~~~~~~ll~ls~~Fs~~E~al~s~~~~~l~~l~~~~~~~-----a~~~~~l~~~~~~~l~tilign~~~~~~-~~~   89 (447)
                      ++...-.+++|++++++|||.+.++++++...++.+.+.|+..     ++.+....++.+.+|+|.+++|.+++-+ +..
T Consensus        12 ~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~~~~e~~L~i   91 (498)
T KOG2118|consen   12 MPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNSIATEAVLPF   91 (498)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhhhccccccce
Confidence            3344445555999999999999999999999999999987543     5566777899999999999999888765 332


Q ss_pred             HHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHhhcchhHHHHHCHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy2372          90 FGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEKAASIISPLMLFLLKLMGPFVKI  169 (447)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~lifgEiiPK~la~~~p~~~~~~~~~~l~~~~~i~~P~~~~  169 (447)
                      ...        ...     +        ...++.+.+..++.||||+||+++.+|...++..+.|+.+++.++++|+.|+
T Consensus        92 ~~~--------~~~-----~--------~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p  150 (498)
T KOG2118|consen   92 FLD--------AES-----G--------ESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYP  150 (498)
T ss_pred             eec--------ccc-----c--------ccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhhee
Confidence            211        000     0        1234556777889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCccCCCCCCCHHHHHHHHHhchhc---CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCC
Q psy2372         170 LTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDI---GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDN  246 (447)
Q Consensus       170 ~~~~~~~~~rl~g~~~~~~~~~s~~el~~lv~~~~~~---g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~t  246 (447)
                      ++..    ...+|...  +....+.++..++..+..+   |.+..+|..++.+++++.++.++++|+|-.+++.++.+..
T Consensus       151 ~~~~----d~~lg~~~--~~~~~~~~l~~lv~~~~~e~~~g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~  224 (498)
T KOG2118|consen  151 FSKL----DTALGLNL--GEFLKRASLLALVQLVGNEAGKGDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTK  224 (498)
T ss_pred             hhhh----hhhhcccc--ccchhhHHHHHHHHHHhcccccCcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccc
Confidence            9876    33455432  3456678888888776543   5689999999999999999999999999999999999998


Q ss_pred             HH-HHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCC
Q psy2372         247 IE-KNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKS  324 (447)
Q Consensus       247 l~-e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~  324 (447)
                      +. +....+.++||||+||++.+..+.+|.+-...+++...........++.+.+ ++.+.+|++++..+.++.|++.+.
T Consensus       225 l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~  304 (498)
T KOG2118|consen  225 LDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEVPLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKS  304 (498)
T ss_pred             cchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhccccccccccchhhhccccccCCCcccHHHHHHHHhhhhc
Confidence            85 8888888999999999998777788887777777765432222225566665 677899999999999999999999


Q ss_pred             ceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc
Q psy2372         325 ELSLVIDEYGELEGIITINDIIHSLIGDI-SNS  356 (447)
Q Consensus       325 ~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~  356 (447)
                      |++.|.. +...+|++|.+|+ +++++++ ||.
T Consensus       305 H~~~v~~-~~~~~~~~~l~~~-~~~~~ev~de~  335 (498)
T KOG2118|consen  305 HMAVVRN-GHVDIFVLTLEDL-EEVVKEVEDEE  335 (498)
T ss_pred             eeEEEec-CCcceeeEeccch-hhhcceecccc
Confidence            9998876 6889999999999 8888888 763

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.80  E-value=2.6e-18  Score=178.96  Aligned_cols=171  Identities=18%  Similarity=0.277  Sum_probs=148.8

Q ss_pred             CCCCHHHHHHHHHhchhcCccch-----HHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIFNK-----IEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~~-----~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|++|+..++..+...|.+++     +|++++++++++++.     |.  +++++++++++++++++.|.+++++++|
T Consensus        43 dtvTe~ema~~ma~~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~--~~~vtl~~~~tv~eal~~m~~~~~s~lp  115 (450)
T TIGR01302        43 DTVTESRMAIAMAREGGIGVIHRNMSIEEQAEQVKRVKRAENG-----II--SDPVTISPETTVADVLELMERKGISGIP  115 (450)
T ss_pred             CccCHHHHHHHHHhcCCCceeecCCCHHHHHHHHhhhccccCc-----ee--cCceEeCCCCCHHHHHHHHHHcCCCEEE
Confidence            46899999999999988999995     899999999987664     54  3667899999999999999999999999


Q ss_pred             EEeCCC--CeEEEEEEhhhHHHHhHhCCCccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEE
Q psy2372         264 VYKKSI--SKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI  339 (447)
Q Consensus       264 V~~~~~--~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGi  339 (447)
                      |+|++.  ++++|+|+.+|++...  ...   .+++++|+  +++++++++++.++++.|++++.+.+||+|++|+++|+
T Consensus       116 Vvd~~~~~~~lvGIVt~rDL~~~~--~~~---~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGi  190 (450)
T TIGR01302       116 VVEDGDMTGKLVGIITKRDIRFVK--DKG---KPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGL  190 (450)
T ss_pred             EEeCCCCCCeEEEEEEHHHHhhhh--cCC---CCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEE
Confidence            998643  6999999999998642  122   67999997  78899999999999999999999999999999999999


Q ss_pred             EeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHH
Q psy2372         340 ITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFD  378 (447)
Q Consensus       340 VT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~  378 (447)
                      ||++|+++++.       .+...+.++|+|+|.|.+++.
T Consensus       191 VT~~DIl~~~~-------~~~~~~d~~g~l~V~aav~~~  222 (450)
T TIGR01302       191 ITMKDIVKRRK-------FPHASKDENGRLIVGAAVGTR  222 (450)
T ss_pred             EEhHHhhhccc-------CCcceEeCCCCEEEEEEecCc
Confidence            99999999862       234566788999999999873

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters

Probab=99.78  E-value=1.7e-18  Score=137.96  Aligned_cols=78  Identities=33%  Similarity=0.657  Sum_probs=67.6

Q ss_pred             EecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcE--EEEcCEEEEEEEeecCeeeEEE
Q psy2372         363 FCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN--FIWKNIKIEVIDMNNNKIERLL  440 (447)
Q Consensus       363 ~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~--~~~~~~~f~v~~~~~~ri~~v~  440 (447)
                      +.++|+|+++|+++++|+++.+|++  +|.   ++|+|+|||+++++|++|++||+  +.+++++|+|.+++++||.+|+
T Consensus         2 ~~~~~~~~v~G~~~l~~l~~~~~~~--l~~---~~~~Tl~G~i~~~l~~iP~~Ge~~~i~~~~~~~~V~~~~~~rI~~V~   76 (81)
T PF03471_consen    2 KLDDGTYIVSGSTPLDDLNELLGLD--LPE---EDYDTLGGLILEQLGRIPEVGERVEIELENYEFEVLEMDGRRIRKVR   76 (81)
T ss_dssp             EETTSEEEEETTSBHHHHHHHHTS---TTT---TTTSBHHHHHHHHHTSS--TTSEEEEEETTEEEEEEEEETTEEEEEE
T ss_pred             eEcCCEEEEEecCCHHHHHHHHCcC--CCc---cchhhHHHHHHHHcCCCCCCCeEEEEEcCCEEEEEEEeeCCEEEEEE
Confidence            6789999999999999999999999  984   47999999999999999999995  4555999999999999999999


Q ss_pred             EEecC
Q psy2372         441 VTILN  445 (447)
Q Consensus       441 v~~~~  445 (447)
                      +++.+
T Consensus        77 i~~~~   81 (81)
T PF03471_consen   77 ITRLP   81 (81)
T ss_dssp             EEE--
T ss_pred             EEECC
Confidence            99864

This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.77  E-value=1.9e-17  Score=156.33  Aligned_cols=208  Identities=13%  Similarity=0.205  Sum_probs=155.7

Q ss_pred             HHHHCHHHHHHHHhHHHH-------HHHHHHHHH---HHHHHHHHHHHHHHhcCccCC-------------------CCC
Q psy2372         140 IAMQYSEKAASIISPLML-------FLLKLMGPF---VKILTISTESILDIFNIKYKK-------------------NDL  190 (447)
Q Consensus       140 la~~~p~~~~~~~~~~l~-------~~~~i~~P~---~~~~~~~~~~~~rl~g~~~~~-------------------~~~  190 (447)
                      +.+-||..-|..+...+.       -+.++++|+   +.++-..+-...++.+.....                   +..
T Consensus       123 ~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rvg  202 (382)
T COG3448         123 LRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVG  202 (382)
T ss_pred             hcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHHHHHHHhcCCCCCccCCCcccccCCCCCCchhccC
Confidence            667788877777766654       233466776   333333333334444433211                   124


Q ss_pred             CCHHHHHHHHHhchhcC---------ccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcE
Q psy2372         191 ITEEEIYKLFREGFDIG---------IFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNY  261 (447)
Q Consensus       191 ~s~~el~~lv~~~~~~g---------~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~  261 (447)
                      ++.+|+...+++..|-=         .+.+.|.+-+.+  ++.+.++.|||+  +++++++.+++++++.+++.++++..
T Consensus       203 fs~~Dld~aL~~~~E~lDIdrddLe~llr~~elqa~~R--~~~~LtcadIMS--rdVvtv~~~ts~dhA~~ll~~H~ika  278 (382)
T COG3448         203 FSSEDLDAALQRLGETLDIDRDDLERLLRETELQALRR--RMGELTCADIMS--RDVVTVSTDTSIDHARKLLQEHRIKA  278 (382)
T ss_pred             CCHHHHHHHHHhcCceecCCHHHHHHHHHHHHHHHHHH--HhccccHHHhcC--ccceecCCcCChHHHHHHHHHcCccc
Confidence            78899999888765532         333444444433  467889999999  58999999999999999999999999


Q ss_pred             EEEEeCCCCeEEEEEEhhhHHHHhHhCC-----CccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCC
Q psy2372         262 FPVYKKSISKIIGTLNTKTLFKKIISNR-----SIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGE  335 (447)
Q Consensus       262 iPV~~~~~~~ivGiv~~~DLl~~~~~~~-----~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~  335 (447)
                      +||.|++ .+++|+|+.+|+........     ...+.+++.+|. ++.++.++++..+++..|.+.+.|..||+|+.|+
T Consensus       279 LPV~d~~-~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~~g~  357 (382)
T COG3448         279 LPVLDEH-RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDAAGK  357 (382)
T ss_pred             ccccccc-cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcCCCc
Confidence            9999965 89999999999987432110     011267999997 7789999999999999999999999999999999


Q ss_pred             EEEEEeHHHHHHHHhcc
Q psy2372         336 LEGIITINDIIHSLIGD  352 (447)
Q Consensus       336 ~iGiVT~~DIle~i~ge  352 (447)
                      ++||||..|++.++...
T Consensus       358 lvGIvsQtDliaal~r~  374 (382)
T COG3448         358 LVGIVSQTDLIAALYRN  374 (382)
T ss_pred             EEEEeeHHHHHHHHHHH
Confidence            99999999999998753

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.73  E-value=2.4e-17  Score=171.90  Aligned_cols=156  Identities=19%  Similarity=0.182  Sum_probs=136.1

Q ss_pred             CCCCHHHHHHHHHhchhc------CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHh-----C
Q psy2372         189 DLITEEEIYKLFREGFDI------GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILD-----S  257 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~------g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~-----~  257 (447)
                      ..++.+|+..++++..++      +.++++|++.+++++++++.+++++|+  +++.+++.++|++++++.+++     +
T Consensus        88 ~~l~~dd~~~ll~~l~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~eal~~l~~~~~~~~  165 (449)
T TIGR00400        88 NEMNLDDVIDLLEEVPANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVGKALDYIRRVAKTKE  165 (449)
T ss_pred             HcCChhHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHHHHHHHHHhcCCCcc
Confidence            458899999999998887      579999999999999999999999998  578899999999999999985     2


Q ss_pred             CCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC-CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCE
Q psy2372         258 SYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP-PLFIPETISTMQLLETFKKNKSELSLVIDEYGEL  336 (447)
Q Consensus       258 ~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~-~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~  336 (447)
                      +...+||+|+ .++++|+++.+|++...   ..   .+++++|++ ++++++++++.++++.|++++...+||+|++|++
T Consensus       166 ~~~~v~Vvd~-~~~l~GvV~l~dLl~a~---~~---~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~l  238 (449)
T TIGR00400       166 DIYTLYVTNE-SKHLKGVLSIRDLILAK---PE---EILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRL  238 (449)
T ss_pred             ceeEEEEECC-CCeEEEEEEHHHHhcCC---CC---CcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeE
Confidence            3345666664 48999999999998642   22   579999965 5689999999999999999999999999999999


Q ss_pred             EEEEeHHHHHHHHhccc
Q psy2372         337 EGIITINDIIHSLIGDI  353 (447)
Q Consensus       337 iGiVT~~DIle~i~gei  353 (447)
                      +|+||.+|+++.+..+.
T Consensus       239 vGiIt~~Dil~~l~~~~  255 (449)
T TIGR00400       239 VGIVTVDDIIDVIQSEA  255 (449)
T ss_pred             EEEEEHHHHHHHHHhhh
Confidence            99999999999987654

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.66  E-value=4.9e-16  Score=144.56  Aligned_cols=128  Identities=22%  Similarity=0.319  Sum_probs=116.7

Q ss_pred             hhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChh
Q psy2372         218 SRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDIT  297 (447)
Q Consensus       218 ~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~  297 (447)
                      ..+.+..+.+|+++|+  +++.++.+++|++|+.+.+.+++++..||.|+  |+++|+++..|+..+..++..  +..++
T Consensus       164 ~~m~siPk~~V~~~~s--~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~--dk~vGiit~~dI~~aia~g~~--~~kV~  237 (294)
T COG2524         164 SKMVSIPKEKVKNLMS--KKLITVRPDDTLREAAKLFYEKGIRGAPVVDD--DKIVGIITLSDIAKAIANGNL--DAKVS  237 (294)
T ss_pred             eeeeecCcchhhhhcc--CCceEecCCccHHHHHHHHHHcCccCCceecC--CceEEEEEHHHHHHHHHcCCc--cccHH
Confidence            4445667888999999  47889999999999999999999999999984  599999999999999987654  38899


Q ss_pred             hhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         298 SAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       298 ~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++|+ +++++.+++.+.||++.|.+++...++|+|.+|+.+|+||+.||+..+.|
T Consensus       238 ~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia~  292 (294)
T COG2524         238 DYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIAG  292 (294)
T ss_pred             HHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhhc
Confidence            9995 68999999999999999999999999999999999999999999999876

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.63  E-value=1e-14  Score=153.60  Aligned_cols=169  Identities=17%  Similarity=0.224  Sum_probs=141.6

Q ss_pred             CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|++|+...+..+...|.|+     ++++++++++.++     +++|.  .++.++++++++.++++.|.+++++++|
T Consensus        50 ~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~I~~vk~~-----~dim~--~~~v~i~~~~tv~ea~~~m~~~~~~~lp  122 (486)
T PRK05567         50 DTVTEARMAIAMAREGGIGVIHKNMSIEEQAEEVRKVKRS-----ESGVV--TDPVTVTPDTTLAEALALMARYGISGVP  122 (486)
T ss_pred             CCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHHHHHhhhh-----hhccc--CCCeEeCCCCCHHHHHHHHHHhCCCEEE
Confidence            4689999999999888888888     4788899888775     45676  4677899999999999999999999999


Q ss_pred             EEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEe
Q psy2372         264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIIT  341 (447)
Q Consensus       264 V~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT  341 (447)
                      |+|+ .++++|+|+.+|++...  +..   .++.++|+  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||
T Consensus       123 Vvd~-~g~lvGiVt~~DL~~~~--~~~---~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT  196 (486)
T PRK05567        123 VVDE-NGKLVGIITNRDVRFET--DLS---QPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLIT  196 (486)
T ss_pred             EEcc-CCEEEEEEEHHHhhhcc--cCC---CcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEE
Confidence            9985 48999999999997542  122   57899994  6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccceEEecCCeEEEeccCCH
Q psy2372         342 INDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTF  377 (447)
Q Consensus       342 ~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i  377 (447)
                      .+|+++.+..       +...+..+++|.+.|.+..
T Consensus       197 ~~DLl~~~~~-------p~a~~d~~g~l~V~aai~~  225 (486)
T PRK05567        197 VKDIEKAEEF-------PNACKDEQGRLRVGAAVGV  225 (486)
T ss_pred             hHHhhhhhhC-------CCcccccCCCEEEEeeccc
Confidence            9999998631       1222345677888877773

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.61  E-value=3.5e-15  Score=144.32  Aligned_cols=123  Identities=24%  Similarity=0.357  Sum_probs=112.2

Q ss_pred             cccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc
Q psy2372         221 LKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI  300 (447)
Q Consensus       221 l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im  300 (447)
                      ..-+-.+|+|+|+|..+..++..++++++..++..++||+||||+|+. .+++|+|+.||+.....   .   .++..+|
T Consensus       183 IKkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~rDv~~~~~---~---t~ieKVM  255 (432)
T COG4109         183 IKKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS-MKVVGVVTMRDVLDKKP---S---TTIEKVM  255 (432)
T ss_pred             hhhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc-ceEEEEEEehhhhcCCC---C---ccHHHHh
Confidence            344567899999999999999999999999999999999999999965 89999999999987532   2   7899999


Q ss_pred             -CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         301 -QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       301 -~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                       +.|.++.+.+++..+.+.|--.+..+.||+|++.+++|+||++|+++.+-
T Consensus       256 tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         256 TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             ccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence             56999999999999999999999999999999999999999999999974

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.56  E-value=7.6e-14  Score=116.37  Aligned_cols=110  Identities=33%  Similarity=0.674  Sum_probs=96.6

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLL  316 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al  316 (447)
                      ++.+++.++++.++.+.|.+++++.+||++++.++++|+++.+|+++...++...  ..+.++++++.++++++++.+++
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~~--~~~~~~~~~~~~v~~~~~l~~~~   79 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEED--LDLRDLLRPPLFVPESTPLDDLL   79 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCCc--CCHHHHhcCCeecCCCCcHHHHH
Confidence            5778999999999999999999999999985437999999999999876543321  45777888889999999999999


Q ss_pred             HHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         317 ETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      +.|.+++.+.+||+|++|+++|+||+.|++++
T Consensus        80 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~~  111 (111)
T cd04590          80 EEMRKERSHMAIVVDEYGGTAGLVTLEDILEE  111 (111)
T ss_pred             HHHHhcCCcEEEEEECCCCEEEEeEHHHhhcC
Confidence            99999999999999998999999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.4e-13  Score=116.78  Aligned_cols=110  Identities=14%  Similarity=0.207  Sum_probs=91.2

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-cCCChhhh------c-CCCeeeCC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-VNIDITSA------I-QPPLFIPE  308 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-~~~~v~~i------m-~~~~~V~~  308 (447)
                      ++.++++++++.++.+.|.+++++++||+++ .++++|+++.+|++....++... ...++.+.      | .++.++++
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   80 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-NGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSP   80 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-CCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcC
Confidence            4678999999999999999999999999985 48999999999999765433211 01223332      2 34679999


Q ss_pred             CCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         309 TISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       309 ~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus        81 ~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          81 DDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=1.7e-13  Score=115.30  Aligned_cols=110  Identities=10%  Similarity=0.175  Sum_probs=95.1

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh-CCCccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS-NRSIVNIDITSAI-QPPLFIPETISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~-~~~~~~~~v~~im-~~~~~V~~~~~l~~  314 (447)
                      ++.+++.++++.++.+.|.+++++.+||+|++ ++++|+++.+|+++.... +......++.++| +++.++++++++.+
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   80 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-GKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHD   80 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHH
Confidence            35678999999999999999999999999865 899999999999976543 1111225788998 56789999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|.+++.+.+||+|+.|+++|+||++|+++
T Consensus        81 a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          81 VWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.53  E-value=1.4e-13  Score=115.36  Aligned_cols=108  Identities=15%  Similarity=0.267  Sum_probs=92.6

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.+++.+.++.++.+.|.+++++.+||++++ ++++|+++.+|+++...++..  +.++.++| .++.++++++++.++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~--~~~v~~~~~~~~~~v~~~~~l~~a   78 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-NKVLGQVTLSDLLEIGPNDYE--TLKVCEVYIVPVPIVYCDSKVTDL   78 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHhhcccccc--ccChhheeecCCcEECCCCcHHHH
Confidence            35678999999999999999999999999854 899999999999874322111  14688888 466789999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+++.+.+||+|++|+++|+||.+|+++
T Consensus        79 l~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          79 LRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             HHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            99999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.8e-13  Score=114.94  Aligned_cols=110  Identities=16%  Similarity=0.276  Sum_probs=94.4

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDITSAI-QPPLFIPETISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~~im-~~~~~V~~~~~l~~  314 (447)
                      ++.+++.++++.++++.|.+++++.+||++++.++++|+++.+|+++.+.++. .....++.++| ++++++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   81 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKY   81 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHH
Confidence            56789999999999999999999999999854379999999999998654322 21225688998 46789999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|.+++.+.+||+|+ |+++|+||++|++.
T Consensus        82 ~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          82 CARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             HHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            999999999999999998 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.53  E-value=1.6e-13  Score=115.43  Aligned_cols=109  Identities=11%  Similarity=0.205  Sum_probs=94.0

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHH
Q psy2372         238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLL  316 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al  316 (447)
                      +.++++++++.++.+.|.+.+++++||+|++ ++++|+++.+|+++...++......++.++| +++.++++++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l   81 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDRD-GGVVGIITLPDLLRALEADEAGEPSAVDEVATPPLLTVHPDEPLAHAL   81 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-CCEEEEEEHHHHHHHHhcccccccccHHHhccCCceEECCCCCHHHHH
Confidence            4578899999999999999999999999865 8999999999999876543221124588888 5678999999999999


Q ss_pred             HHHHHcCCceEEEEcCC--CCEEEEEeHHHHHH
Q psy2372         317 ETFKKNKSELSLVIDEY--GELEGIITINDIIH  347 (447)
Q Consensus       317 ~~m~~~~~~~a~VvDe~--G~~iGiVT~~DIle  347 (447)
                      +.|.+++.+.+||+|++  |+++|+||.+|+++
T Consensus        82 ~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          82 DRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            99999999999999987  89999999999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.5e-13  Score=113.18  Aligned_cols=109  Identities=12%  Similarity=0.287  Sum_probs=94.3

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC-ccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS-IVNIDITSAI-QPPLFIPETISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~-~~~~~v~~im-~~~~~V~~~~~l~~  314 (447)
                      ++.+++.+.++.++.+.+.+++++++||++++ ++++|+++.+|+++.+..... ....++.++| +++.++++++++.+
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   80 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDE   80 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHH
Confidence            45678999999999999999999999999865 799999999999987654321 1125788999 56789999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|.+.+.+.+||+|+ |+++|+||.+|+++
T Consensus        81 ~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          81 AMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             HHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            999999999999999987 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.7e-13  Score=112.91  Aligned_cols=95  Identities=18%  Similarity=0.189  Sum_probs=86.2

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLL  316 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al  316 (447)
                      +++++++++++.++.+.|.+++++.+||+|++.++++|+++.+|+.+...                +.++++++++.+++
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------~~~v~~~~~l~~a~   65 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------LVSIHPERSLFDAA   65 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee----------------eEEeCCCCcHHHHH
Confidence            57789999999999999999999999999864479999999999986421                67899999999999


Q ss_pred             HHHHHcCCceEEEEcCC-CCEEEEEeHHHHHH
Q psy2372         317 ETFKKNKSELSLVIDEY-GELEGIITINDIIH  347 (447)
Q Consensus       317 ~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle  347 (447)
                      +.|.+++.+.+||+|++ |+++|+||..|++.
T Consensus        66 ~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          66 LLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             HHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            99999999999999987 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.50  E-value=3.6e-13  Score=112.26  Aligned_cols=108  Identities=14%  Similarity=0.302  Sum_probs=94.5

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.+++.+++++++.+.+.+.+++.+||++++ ++++|+++.+|+.+....+..  +.++.++| +++.++++++++.++
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~--~~~v~~~~~~~~~~i~~~~~~~~~   78 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-GHLVGLLTRDDLIRALAEGGP--DAPVRGVMRRDFPTVSPSATLDAV   78 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-CcEEEEeeHHHHHHHHHhcCC--CCcHHHHhcCCCcEECCCCcHHHH
Confidence            45678999999999999999999999999854 899999999999987654332  25688888 567899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+++.+.+||+|++|+++|++|.+|+.+
T Consensus        79 ~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          79 LRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.50  E-value=2.9e-12  Score=138.02  Aligned_cols=126  Identities=13%  Similarity=0.218  Sum_probs=107.1

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-  301 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-  301 (447)
                      ++.++|+|+|++  +..+++++++++|+.+.+.+++++.+||+|++ ++++|+++.+|+.+...+++...+.++.++|+ 
T Consensus       444 L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~  520 (574)
T PRK01862        444 LRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-GRFRGAVALKDITSDLLDKRDTTDKTAADYAHT  520 (574)
T ss_pred             HhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-CeEEEEEEHHHHHHHhhcccccccchHHHhccC
Confidence            456789999985  45689999999999999999999999999864 89999999999998654332222256889995 


Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC--CCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEY--GELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~--G~~iGiVT~~DIle~i~g  351 (447)
                      +++++++++++.++++.|.+++.+.+||+|++  |+++|+||++|+++.+..
T Consensus       521 ~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        521 PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            56899999999999999999999999999976  479999999999998753

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=99.50  E-value=1.9e-13  Score=137.03  Aligned_cols=123  Identities=13%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-C
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-P  302 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~  302 (447)
                      ...+|+++|++.+++.++++++++.++++.|.+++++.+||++++ ++++|+|+.+|+++....+......++.++|+ +
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~-g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN-MKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC-CcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCC
Confidence            567899999964578899999999999999999998888888754 89999999999987655432222257999995 6


Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      +.++++++++.++++.|.+++.+.+||+| +|+++|+||..|++..
T Consensus       279 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~  323 (326)
T PRK10892        279 GIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence            78999999999999999999999999998 4899999999999874

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.50  E-value=6.3e-13  Score=110.61  Aligned_cols=106  Identities=16%  Similarity=0.255  Sum_probs=93.9

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.++++++++.++++.+.+++++++||++++ ++++|+++.+|+++....+.    ..+.++| +++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~----~~~~~~~~~~~~~v~~~~~l~~~   77 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDK----KSVEDIMTRNVITATPDEPIDVA   77 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCC-CcEEEEEeHHHHHHHHhhCc----cCHHHhcCCCCeEECCCCcHHHH
Confidence            56689999999999999999999999999854 89999999999987654432    3588888 577899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+++.+.+||+|++|++.|+||++|+.+
T Consensus        78 ~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          78 ARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            99999999999999999999999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.49  E-value=3.9e-13  Score=114.35  Aligned_cols=110  Identities=16%  Similarity=0.268  Sum_probs=94.8

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----------ccCCChhhhc-CCCee
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----------IVNIDITSAI-QPPLF  305 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----------~~~~~v~~im-~~~~~  305 (447)
                      ++.+++.++++.++.+.|.+++++++||++++ ++++|+++.+|++........          ....++.++| +++.+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   81 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-RRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVT   81 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-CCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCee
Confidence            56789999999999999999999999999865 899999999999876543220          1124688888 46789


Q ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++++++.++++.|.+++.+.+||+|++|+++|+||..|++.
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          82 VRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             eCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            999999999999999999999999998899999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.49  E-value=1.7e-13  Score=118.88  Aligned_cols=155  Identities=20%  Similarity=0.300  Sum_probs=116.3

Q ss_pred             CCCHHHHHHHHHhc------hhcCccchHH---HHHHhhhccc--CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCC
Q psy2372         190 LITEEEIYKLFREG------FDIGIFNKIE---YNLASRALKL--DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSS  258 (447)
Q Consensus       190 ~~s~~el~~lv~~~------~~~g~l~~~E---~~~i~~~l~l--~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~  258 (447)
                      .+|++||.....-+      .+.|.+++.-   +++++...+.  ...+++.+|+  ++++++.+++++.+++++|+++|
T Consensus        18 GitQ~dLA~~aGVSQ~~IArlE~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~~vv~lM~~~g   95 (187)
T COG3620          18 GITQKDLARRAGVSQPYIARLEAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSISDVVNLMRDKG   95 (187)
T ss_pred             CCCHHHHHHHcCccHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHHHHHHHHHHcC
Confidence            35566665443322      2446666543   2333333232  3456789998  68999999999999999999999


Q ss_pred             CcEEEEEeCCCCeEEEEEEhhhHHHHhHhC-CCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCE
Q psy2372         259 YNYFPVYKKSISKIIGTLNTKTLFKKIISN-RSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGEL  336 (447)
Q Consensus       259 ~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~-~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~  336 (447)
                      +|.+||.++  |+++|-++.+|+.+...++ ......+++++|. +.++|+++.++..+-+++..+  +...|+ ++|++
T Consensus        96 ~SQlPVi~~--~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~--~AVlV~-e~G~~  170 (187)
T COG3620          96 ISQLPVIEE--DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPFPTVSPDESLNVISQLLEEH--PAVLVV-ENGKV  170 (187)
T ss_pred             CccCceeeC--CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhC--CeEEEE-eCCce
Confidence            999999984  7999999999999988665 3333468999995 557999999999888877653  334455 68999


Q ss_pred             EEEEeHHHHHHHHhc
Q psy2372         337 EGIITINDIIHSLIG  351 (447)
Q Consensus       337 iGiVT~~DIle~i~g  351 (447)
                      +||||..||+..+-|
T Consensus       171 vGIITk~DI~k~~~~  185 (187)
T COG3620         171 VGIITKADIMKLLAG  185 (187)
T ss_pred             EEEEeHHHHHHHHhc
Confidence            999999999998765

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4.7e-13  Score=113.35  Aligned_cols=110  Identities=12%  Similarity=0.190  Sum_probs=94.2

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTM  313 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~  313 (447)
                      +..++++++++.++++.|.+++.+.+||.|++ ++++|+++.+|+++....+......++.++|+   ++.++++++++.
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~   80 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVL   80 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHH
Confidence            35689999999999999999999999999854 78999999999998765333222356888885   467999999999


Q ss_pred             HHHHHHHHcCCceEEEEcCC---CCEEEEEeHHHHHH
Q psy2372         314 QLLETFKKNKSELSLVIDEY---GELEGIITINDIIH  347 (447)
Q Consensus       314 ~al~~m~~~~~~~a~VvDe~---G~~iGiVT~~DIle  347 (447)
                      ++++.|.+++.+.+||+|++   |+++|+||++|+++
T Consensus        81 ~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999999999999987   68999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4.9e-13  Score=113.91  Aligned_cols=111  Identities=18%  Similarity=0.279  Sum_probs=94.8

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-----------cCCChhhhcC-CCe
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-----------VNIDITSAIQ-PPL  304 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-----------~~~~v~~im~-~~~  304 (447)
                      ++.+++++.++.++++.|.+++++++||++++.++++|+++.+|+++.+.++...           ...++.++|+ +++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVI   81 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCce
Confidence            4567899999999999999999999999986448999999999999866432210           1146888874 578


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++++++.++++.|++.+.+.+||+|++|+++|+||.+|+++
T Consensus        82 ~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          82 TITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             EeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            9999999999999999999999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.48  E-value=3.2e-13  Score=113.37  Aligned_cols=108  Identities=14%  Similarity=0.218  Sum_probs=92.0

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCC-CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC---CeeeCCCCCH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSS-YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP---PLFIPETIST  312 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~-~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~---~~~V~~~~~l  312 (447)
                      ++.++++++++.++.+.|.+++ .+.+||+|++ ++++|+++.+|+++...+...  ..++.++|++   ++++++++++
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~dl~~~~~~~~~--~~~v~~~~~~~~~~~~v~~~~~l   78 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-GRYVGIISLADLRAIPTSQWA--QTTVIQVMTPAAKLVTVLSEESL   78 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-CcEEEEEEHHHHHHHHHhhcc--ccchhhhhcccccceEECCCCcH
Confidence            4568999999999999997765 8999999854 899999999999986643221  2568888853   5689999999


Q ss_pred             HHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         313 MQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       313 ~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      .++++.|++++.+.+||+|++|+++|++|.+|+++
T Consensus        79 ~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          79 AEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            99999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=99.48  E-value=2.3e-13  Score=136.10  Aligned_cols=122  Identities=14%  Similarity=0.246  Sum_probs=105.5

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CC
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PP  303 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~  303 (447)
                      ..+|+++|++..++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|+.+....+.. .+.++.++|+ ++
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt~~dl~~~~~~~~~-~~~~v~~im~~~~  273 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-QQVQGVFTDGDLRRWLVGGGA-LTTPVNEAMTRGG  273 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEecHHHHHHHHhCCCC-cCCcHHHhcCCCC
Confidence            46899999864347899999999999999999999999999865 899999999999886644321 1256899995 56


Q ss_pred             eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      .++++++++.++++.|.+++...+||+|++|+++|+||.+|+++.
T Consensus       274 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        274 TTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA  318 (321)
T ss_pred             EEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence            789999999999999999999999999988999999999999864

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.48  E-value=4.6e-13  Score=111.39  Aligned_cols=105  Identities=18%  Similarity=0.306  Sum_probs=93.3

Q ss_pred             CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372         236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQ  314 (447)
Q Consensus       236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~  314 (447)
                      .++.+++.+++++++.+.|.+++++++||++++ ++++|+++.+|++...   ..   .++.++| .++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~---~~---~~v~~~~~~~~~~v~~~~~l~~   74 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-NKVVGIVTSKDVAGKD---PD---TTIEKVMTKNPITVNPKTSVAS   74 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-CeEEEEecHHHHhccc---cc---ccHHHHhcCCCeEECCCCCHHH
Confidence            356789999999999999999999999999854 8999999999998642   11   5688998 56789999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|.+++.+.+||+|++|+++|++|.+|+++
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          75 VAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             HHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            999999999999999999999999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.48  E-value=7.4e-13  Score=110.53  Aligned_cols=110  Identities=16%  Similarity=0.311  Sum_probs=95.1

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.+++.+++++++.+.|.+.+++++||++++ ++++|+++.+|+++....+.. .+..+.++| ++++++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~~~~~   79 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-ERPIGIVTERDIVRAVAAGID-LDTPVSEIMTRDLVTVDPDEPVAEA   79 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEeeHHHHHHHHhccCC-CccCHHHhccCCCEEECCCCcHHHH
Confidence            34578999999999999999999999999865 899999999999887654322 225688887 567899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      ++.|.+++...+||+|++|++.|++|.+|++++
T Consensus        80 ~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~~  112 (112)
T cd04624          80 AKLMRKNNIRHHLVVDKGGELVGVISIRDLVRE  112 (112)
T ss_pred             HHHHHHcCccEEEEEcCCCcEEEEEEHHHhccC
Confidence            999999899999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.48  E-value=5.5e-13  Score=111.33  Aligned_cols=110  Identities=22%  Similarity=0.330  Sum_probs=95.0

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.++++++++.++.+.|.+++++.+||++++ ++++|+++.+|+.+...+.......++.++| +++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   80 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLEDA   80 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-CCEEEEEEHHHHHHHHhcccccccEEHHHhccCCCcEEcCCCCHHHH
Confidence            45679999999999999999999999999865 8999999999998866443221125688888 467899999999999


Q ss_pred             HHHHHHcCCceEEEEcC-CCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDE-YGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe-~G~~iGiVT~~DIle  347 (447)
                      ++.|++.+.+.+||+|+ +|+++|++|.+|++.
T Consensus        81 ~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          81 LKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             HHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            99999999999999998 899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=6.4e-13  Score=110.84  Aligned_cols=108  Identities=17%  Similarity=0.274  Sum_probs=92.8

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++..++.+++++++++.|.+++++++||++++ ++++|+++.+|++........ ...++.++| +++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESF-LEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-CCEEEEEehHHhHHHHhhccc-ccCcHHHHhcCCcEEEcCCCcHHHH
Confidence            45678999999999999999999999999854 899999999999876543211 124688888 466899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+++.+.+||+|+ |+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          80 LDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            99999999999999998 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.47  E-value=1.2e-12  Score=108.88  Aligned_cols=107  Identities=17%  Similarity=0.238  Sum_probs=93.7

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~a  315 (447)
                      ++..++.++++.++.+.|.+++++++||+++  ++++|+++.+|+++....+...  .++.++|+ ++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~~l~~~~~~~~~~--~~v~~~~~~~~~~v~~~~~~~~~   77 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD--GKLVGIVTLSDIAHAIARGLEL--AKVKDVMTKDVITIDEDEQLYDA   77 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccccc--cCHHHHhcCCceEECCCCCHHHH
Confidence            4567899999999999999999999999984  7999999999999876543221  56888884 67899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus        78 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          78 IRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            99999999999999998899999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.47  E-value=1.5e-12  Score=108.31  Aligned_cols=108  Identities=14%  Similarity=0.314  Sum_probs=93.9

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.++++++++.++.+.|.+++++.+||+++  ++++|+++.+|+++....+.. ...++.++| ++++++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~~l~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~~   78 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD--GRPLGIVTERDILRLLASGPD-LQTPVGEVMSSPLLTVPADTSLYDA   78 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEeHHHHHHHHhcCCC-CCcCHHHhcCCCceEECCCCCHHHH
Confidence            4567999999999999999999999999985  899999999999987644321 226788888 567889999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+.+.+.+||+|++|+++|+||.+|+++
T Consensus        79 l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          79 RQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            99999999999999998899999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.47  E-value=6.8e-13  Score=113.72  Aligned_cols=110  Identities=23%  Similarity=0.344  Sum_probs=91.1

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCC-------------Chhhhc-CC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNI-------------DITSAI-QP  302 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~-------------~v~~im-~~  302 (447)
                      ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++...++......             ...+.+ ++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRP   80 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCC-CcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCC
Confidence            56789999999999999999999999999865 8999999999999865432211000             111334 56


Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        81 ~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          81 LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            789999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1e-12  Score=109.82  Aligned_cols=109  Identities=16%  Similarity=0.326  Sum_probs=93.2

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHH
Q psy2372         238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLL  316 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al  316 (447)
                      ...+++++++.++++.|.+++++++||++++ ++++|+++.+|+++...++......++.++| +++.++++++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKAR   81 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-CCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccCCceEECCCCcHHHHH
Confidence            3568999999999999999999999999854 8999999999998754333211225688888 5678999999999999


Q ss_pred             HHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         317 ETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +.|++++.+.+||+|++|+++|++|..|+++
T Consensus        82 ~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          82 WLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            9999999999999999899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.46  E-value=1.3e-12  Score=108.83  Aligned_cols=108  Identities=16%  Similarity=0.317  Sum_probs=92.8

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.+++.+++++++.+.|.+++++++||+++  ++++|+++.+|+++....+......++.++| ++++++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~   79 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD--GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTAPPITIPPDATVFEA   79 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCCCCeEECCCCcHHHH
Confidence            4667999999999999999999999999984  8999999999998754332211225688888 577899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|++++.+.+||+|+ |+++|++|.+|+++
T Consensus        80 ~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          80 LLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            99999999999999987 99999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1e-12  Score=112.05  Aligned_cols=110  Identities=14%  Similarity=0.142  Sum_probs=89.4

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc----c-----CCChhhhc-CCCeee
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI----V-----NIDITSAI-QPPLFI  306 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~----~-----~~~v~~im-~~~~~V  306 (447)
                      ++.+++.++++.++++.|.+++++++||+|++.++++|+++.+|+++...++...    .     .....++| .++.++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   81 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISI   81 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEe
Confidence            4567899999999999999999999999985437899999999998865432110    0     01112345 456799


Q ss_pred             CCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHH
Q psy2372         307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDII  346 (447)
Q Consensus       307 ~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIl  346 (447)
                      ++++++.++++.|.+++.+.+||+|++|+++|+||++|+=
T Consensus        82 ~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          82 NGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             CCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            9999999999999999999999999999999999999973

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=1.1e-12  Score=111.11  Aligned_cols=110  Identities=22%  Similarity=0.326  Sum_probs=94.5

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC---------ccCCChhhhc-CCCeee
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS---------IVNIDITSAI-QPPLFI  306 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~---------~~~~~v~~im-~~~~~V  306 (447)
                      ++.++++++++.++.+.|.+.+++++||++++ ++++|+++.+|+++.......         ....++.++| +++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v   80 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-GKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-CCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEe
Confidence            35678999999999999999999999999864 899999999999986543211         0135788888 467899


Q ss_pred             CCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       307 ~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++++.++++.|++++.+.+||+|++|+++|++|..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          81 TPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            99999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.46  E-value=1.8e-12  Score=108.63  Aligned_cols=108  Identities=17%  Similarity=0.313  Sum_probs=93.2

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHH
Q psy2372         238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLL  316 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al  316 (447)
                      .++++.++++.++++.|.+++++.+||++++ ++++|+++.+|+++...++.. .+.++.++|+ ++.++++++++.+++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~~~~-~~~~v~~~~~~~~~~v~~~~~l~~~~   81 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVDEN-GRLLGTVTDGDIRRALLKGLS-LDDPVSEVMNRNPITAKVGSSREEIL   81 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEECCC-CCEEEEEEcHHHHHHHhcCCC-cCCCHHHhhcCCCEEEcCCCCHHHHH
Confidence            3578999999999999999999999999854 899999999999876654322 1256889995 567899999999999


Q ss_pred             HHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         317 ETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus        82 ~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          82 ALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            9999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.45  E-value=4.7e-13  Score=114.94  Aligned_cols=112  Identities=13%  Similarity=0.172  Sum_probs=93.4

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.++++++++.++++.|.+++++.+||++++ ++++|+++.+|+++...++......+++++| +++.++++++++.++
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~v   81 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGKL   81 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhccceecCCCCCHHHH
Confidence            56789999999999999999999999999854 8999999999999766543322337899999 567899999999999


Q ss_pred             HHHHH---------HcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         316 LETFK---------KNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       316 l~~m~---------~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                      .+.+.         +.+.+.+||+|++|+++|+||..|++..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          82 SRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             HhhcccCCceEEEeccccccccccccccceEEEEehhHhhhhC
Confidence            99653         23567778899889999999999998753

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.2e-12  Score=109.79  Aligned_cols=108  Identities=19%  Similarity=0.372  Sum_probs=91.2

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCcc-----CCChhhhcC-CCeeeCCCC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIV-----NIDITSAIQ-PPLFIPETI  310 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~-----~~~v~~im~-~~~~V~~~~  310 (447)
                      ++.+++.++++.++.+.|.+++++.+||+|++ ++++|+++.+|+++.........     +.++.++|+ ++.++++++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~   80 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-GKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDA   80 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-CcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCC
Confidence            56789999999999999999999999999854 79999999999998764321100     256888886 578999999


Q ss_pred             CHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         311 STMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       311 ~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.++++.|.+.+  .+||+|++|+++|++|+.|+++
T Consensus        81 ~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          81 DIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             CHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            9999999998754  5899999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.45  E-value=1.4e-12  Score=108.88  Aligned_cols=110  Identities=16%  Similarity=0.349  Sum_probs=94.5

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~a  315 (447)
                      ++.+++.++++.++.+.+.+++++++||++++ ++++|+++.+++++.+.+.......++.++|+ ++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~   81 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEA   81 (114)
T ss_pred             cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-CCEEEEechHHHHHHHhccCccccCCHHHhhccCCeEECCCCcHHHH
Confidence            45578999999999999998899999999854 89999999999998765433222246889985 57799999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+++.+.+||+|++|+++|+||..|+++
T Consensus        82 ~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          82 LELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            99999999999999998899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.2e-12  Score=113.08  Aligned_cols=109  Identities=20%  Similarity=0.366  Sum_probs=93.1

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccC--------------------CCh
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVN--------------------IDI  296 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~--------------------~~v  296 (447)
                      ++.++++++++.++.+.+.+.+++++||+|++ ++++|+++.+|+++..........                    .++
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-GRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKV   80 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-CCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCH
Confidence            45678999999999999999999999999864 899999999999987654321111                    167


Q ss_pred             hhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         297 TSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       297 ~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      .++| +++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          81 EEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             HHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            8888 45789999999999999999999999999998 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.44  E-value=2.6e-12  Score=107.18  Aligned_cols=107  Identities=10%  Similarity=0.180  Sum_probs=92.1

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHH
Q psy2372         238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLL  316 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al  316 (447)
                      ...++.+.+++++++.|.+++++.+||+++  ++++|+++.+|+++....+......++.++|+ +..++++++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVRDG--DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEecC--CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            457899999999999999999999999985  78999999999998664332212256888985 578999999999999


Q ss_pred             HHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         317 ETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus        81 ~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          81 LLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             HHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            9999999999999986 99999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=2.2e-12  Score=108.33  Aligned_cols=108  Identities=14%  Similarity=0.306  Sum_probs=90.0

Q ss_pred             eEEEcCCCCHHHHHHHHHhCC-CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCC--CCHH
Q psy2372         238 VNFINIDDNIEKNLIKILDSS-YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPET--ISTM  313 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~-~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~--~~l~  313 (447)
                      +..++.+.++.++.+.|.+++ ++.+||.+ + ++++|+++.+|+++...++....+.++.++|+ ++++++++  +++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE-K-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEcC-C-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCCCcEEEecccccCHH
Confidence            457899999999999998888 67778776 3 79999999999998664432212256888885 56778876  7899


Q ss_pred             HHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         314 QLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       314 ~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++.|.+++.+.+||+|++|+++|+||++|++.
T Consensus        81 ~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          81 TALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             HHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            9999999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.44  E-value=1.5e-12  Score=113.56  Aligned_cols=109  Identities=11%  Similarity=0.142  Sum_probs=93.3

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-----------------------cC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-----------------------VN  293 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-----------------------~~  293 (447)
                      ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++........                       ..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (135)
T cd04621           2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-GKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVP   80 (135)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-CCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccc
Confidence            45678999999999999999999999999854 8999999999999876422110                       02


Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      .+++++|+ ++.++++++++.++++.|.+++.+.+||+|+ |+++|+||++|+++
T Consensus        81 ~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          81 LVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             ccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            46889985 5679999999999999999999999999987 99999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.43  E-value=3.3e-12  Score=106.67  Aligned_cols=109  Identities=15%  Similarity=0.309  Sum_probs=92.1

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH-hHhCCCccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK-IISNRSIVNIDITSAI-QPPLFIPETISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~-~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~  314 (447)
                      ++.+++.++++.++.+.|.+++++.+||+++  ++++|+++.+|++.. ...+......++.++| +.+.++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~   79 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDE   79 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHH
Confidence            4568999999999999999999999999984  899999999999743 2222221123488888 46789999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|++++.+.+||+|++|+++|++|.+|+++
T Consensus        80 ~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          80 AARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             HHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.43  E-value=3e-12  Score=106.62  Aligned_cols=106  Identities=16%  Similarity=0.268  Sum_probs=92.9

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.+++.+.++.++.+.|.+.+++++||+++  ++++|+++..|+++....+.  ...++.++| +++.++++++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~dl~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~l~~~   78 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG--GRVVGIISRRDVEKALRHGL--GHAPVKDYMSTDVVTVPPDTPLSEV   78 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC--CEEEEEEEHHHHHHHHhccc--ccCcHHHHhcCCCEEECCCCcHHHH
Confidence            4668999999999999999999999999985  89999999999987654322  226788998 567899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+++.+.+||+| +|+++|+||+.|+++
T Consensus        79 ~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          79 QELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             HHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            9999999999999998 799999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.43  E-value=3.4e-12  Score=106.58  Aligned_cols=109  Identities=12%  Similarity=0.252  Sum_probs=92.3

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCcc-CCChhhhcC-CCeeeCCCCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIV-NIDITSAIQ-PPLFIPETISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~-~~~v~~im~-~~~~V~~~~~l~~  314 (447)
                      ++.+++.+++++++.+.|.+++.+.+||+++  ++++|+++.+|+++......... ..++.++|+ ++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~   79 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG--NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLE   79 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC--CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHH
Confidence            4567899999999999999999999999984  89999999999986443222111 156888884 5778999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus        80 ~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          80 ALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             HHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            999999999999999998899999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.43  E-value=3.2e-12  Score=105.89  Aligned_cols=105  Identities=18%  Similarity=0.266  Sum_probs=92.2

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++..++++.++.++.+.|.+++++.+||++++ ++++|+++.+|++.....  .   .++.++| .++.++++++++.++
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~~dl~~~~~~--~---~~v~~~~~~~~~~v~~~~~~~~~   76 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-NKLLGIVSLESLEQAYKE--A---KSLEDIMLEDVFTVQPDASLRDV   76 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-CcEEEEEEHHHHHHHhhc--C---CcHhHhhcCCceEECCCCcHHHH
Confidence            45678999999999999999999999999864 899999999999875422  1   4578888 467899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+.+.+.+||+|++|+++|++|.+|+++
T Consensus        77 ~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          77 LGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            99999999999999999899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.43  E-value=1.4e-12  Score=134.15  Aligned_cols=139  Identities=19%  Similarity=0.257  Sum_probs=121.5

Q ss_pred             ccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCC-----CcEEEEEeCCCCeEEEEEEhhhHH
Q psy2372         208 IFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSS-----YNYFPVYKKSISKIIGTLNTKTLF  282 (447)
Q Consensus       208 ~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~-----~s~iPV~~~~~~~ivGiv~~~DLl  282 (447)
                      .++++|++.++..+.+.+.+++.+|+  ++.++++++.|+++++..+++.+     ...+.|+|++ ++++|+++.++++
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-~~L~Gvvsl~~Ll  190 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-GKLLGVVSLRDLL  190 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-cceEEEeeHHHHh
Confidence            47889999999999999999999999  68999999999999999999654     3466777754 7899999999998


Q ss_pred             HHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccccc
Q psy2372         283 KKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISN  355 (447)
Q Consensus       283 ~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e  355 (447)
                      ....   .   ..++++|. .+.+|+++++..++.+.|++++.-.+||||++++++|+||.+|+++.+-.|-+|
T Consensus       191 ~a~~---~---~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eEa~e  258 (451)
T COG2239         191 TAEP---D---ELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEEATE  258 (451)
T ss_pred             cCCc---H---hHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHHHHH
Confidence            6432   2   67999995 568999999999999999999999999999999999999999999988554333

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.42  E-value=2.8e-12  Score=105.89  Aligned_cols=103  Identities=15%  Similarity=0.107  Sum_probs=90.3

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC-CeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP-PLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~-~~~V~~~~~l~~a  315 (447)
                      ++.+++.+.+++++++.|.+++++.+||++++ ++++|+++.+|+++...       .++.++|++ +.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-g~~~Giv~~~dl~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~   73 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-GQPLGFVTRREAARASG-------GCCGDHAEPFKVTVSVDDDLRIV   73 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-CCEEEEEeHHHHHHhcc-------cchhhhcccCCEEECCCCCHHHH
Confidence            45678999999999999999999999999854 89999999999987421       247788864 4679999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+++.+.+||+|++|+++|+||++|++.
T Consensus        74 ~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          74 LSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            99999999999999999899999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=1.7e-12  Score=108.65  Aligned_cols=109  Identities=19%  Similarity=0.274  Sum_probs=92.7

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC--CccCCChhhhcC-CCeeeCCCCCHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR--SIVNIDITSAIQ-PPLFIPETISTM  313 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~--~~~~~~v~~im~-~~~~V~~~~~l~  313 (447)
                      ++.+++.+.++.++.+.|.+++++++||++++ ++++|+++.+|+++...+..  .....++.++|+ ++.++++++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~   80 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-GNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIV   80 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-CeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHH
Confidence            45678999999999999999999999999854 79999999999997654321  111256888884 667899999999


Q ss_pred             HHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         314 QLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       314 ~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++.|.+++.+.+||+|+ |+++|+||.+|+++
T Consensus        81 ~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          81 DLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             HHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            9999999999999999997 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.42  E-value=4.1e-12  Score=105.56  Aligned_cols=108  Identities=15%  Similarity=0.301  Sum_probs=92.8

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++..++.++++.++.+.|.+.+++++||+++  ++++|+++.+|+.+....+.. ...++.++| +++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~   78 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD--GRLVGIVTLADIRRVPAEGRE-ATVLVGDVMTRDPVTASPDETLRDA   78 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC--CeEEEEEEHHHHHHHHhcCcc-cccCHHHhccCCCeEECCCCCHHHH
Confidence            4567999999999999999999999999985  899999999999986643221 112567777 567899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|++++.+.+||+|++|+++|++|..|+++
T Consensus        79 ~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          79 LKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            99999999999999998899999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.42  E-value=2.1e-12  Score=109.46  Aligned_cols=110  Identities=17%  Similarity=0.257  Sum_probs=92.9

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC----CC-----ccCCChhhhcC-CCeee
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN----RS-----IVNIDITSAIQ-PPLFI  306 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~----~~-----~~~~~v~~im~-~~~~V  306 (447)
                      ++.+++.++++.++++.|.+++++.+||+++ .++++|+++.+|+++.....    ..     ....++.++|+ ++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQK-AGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSV   80 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECC-CCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeE
Confidence            4668999999999999999999999999985 48999999999998742110    00     01256888884 67889


Q ss_pred             CCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       307 ~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++++.++++.|.+++.+.+||+|++|+++|++|++|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          81 TPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            99999999999999999999999999899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.41  E-value=2.1e-12  Score=105.75  Aligned_cols=94  Identities=15%  Similarity=0.241  Sum_probs=85.2

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLL  316 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al  316 (447)
                      ++.+++++.++.++++.|.+++++.+||+|++ ++++|+++.+|+++..                .+.++++++++.+++
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~----------------~~~~v~~~~~l~~a~   64 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-GKLSGIITERDLIAKS----------------EVVTATKRTTVSECA   64 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHhcCC----------------CcEEecCCCCHHHHH
Confidence            46689999999999999999999999999854 8999999999998632                177999999999999


Q ss_pred             HHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         317 ETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       317 ~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +.|.+++.+.+||+|+.|+++|+||.+|++.
T Consensus        65 ~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          65 QKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             HHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            9999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.41  E-value=2.7e-12  Score=134.11  Aligned_cols=118  Identities=14%  Similarity=0.176  Sum_probs=102.9

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-C
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-P  302 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~  302 (447)
                      +..+++++|.  ++++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+....   ..   .++.++|+ +
T Consensus        87 ~~VKv~~iMi--~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~-gklvGIVT~rDL~~~~---~~---~~V~diMt~~  157 (479)
T PRK07807         87 AWVKSRDLVF--DTPVTLSPDDTVGDALALLPKRAHGAVVVVDEE-GRPVGVVTEADCAGVD---RF---TQVRDVMSTD  157 (479)
T ss_pred             hhcccccccc--cCCeEECCCCCHHHHHHHHHhcCCceEEEECCC-CeEEEEEeHHHHhcCc---cC---CCHHHhccCC
Confidence            3466788997  467799999999999999999999999999854 8999999999996431   11   56999994 6


Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      +.++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++...
T Consensus       158 ~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~  205 (479)
T PRK07807        158 LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATI  205 (479)
T ss_pred             ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhh
Confidence            789999999999999999999999999998899999999999998543

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.41  E-value=4.4e-12  Score=105.07  Aligned_cols=107  Identities=19%  Similarity=0.417  Sum_probs=89.5

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~a  315 (447)
                      ++.+++.++++.++.+.|.+++++++||+++  ++++|+++.+|+.+....+......++.++|+ ++.++++++++.++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~   79 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAKFSLPVREVMGEPLPTVDPDAPIEEL   79 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC--CeeEEEEeHHHHHHHHhccccccCcCHHHHhcCCCceeCCCCcHHHH
Confidence            3567899999999999999999999999984  89999999999998765433211256888884 56789999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|++ +. .+||+|++|+++|+||++|+++
T Consensus        80 ~~~~~~-~~-~~~vv~~~~~~~Gvvt~~di~~  109 (110)
T cd04609          80 SELLDR-GN-VAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             HHHHHh-CC-ceeEEecCCeEEEEEeHHHhhc
Confidence            999988 33 4788988899999999999874

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.40  E-value=4.7e-12  Score=106.79  Aligned_cols=109  Identities=21%  Similarity=0.320  Sum_probs=93.1

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----------ccCCChhhhcC-CCee
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----------IVNIDITSAIQ-PPLF  305 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----------~~~~~v~~im~-~~~~  305 (447)
                      ++.+++.+.++.++++.|.+++++.+||+++  ++++|+++.+|+++.......          ....++.++|+ ++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR--GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPIT   79 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC--CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeE
Confidence            4567899999999999999999999999985  899999999999986543210          01145778884 6789


Q ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++++++.++++.|++++.+.+||+|++|+++|+||..|+++
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          80 VSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            999999999999999999999999998899999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=4.9e-12  Score=108.50  Aligned_cols=110  Identities=16%  Similarity=0.350  Sum_probs=91.6

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-------------CccCCChhhhc-CC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-------------SIVNIDITSAI-QP  302 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-------------~~~~~~v~~im-~~  302 (447)
                      ++..++.++++.++.+.|.+.+++.+||++++ ++++|+++.+|+.+.+....             ...+.++.++| ++
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSP   80 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-CcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCC
Confidence            45678999999999999999999999999865 89999999999986542210             01124688888 56


Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEc--CCCCEEEEEeHHHHHH
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVID--EYGELEGIITINDIIH  347 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvD--e~G~~iGiVT~~DIle  347 (447)
                      ++++++++++.++++.|.+++.+.+||++  +.|+++|+||++|+++
T Consensus        81 ~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          81 VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            78999999999999999999999898884  4699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.40  E-value=3.4e-12  Score=109.44  Aligned_cols=109  Identities=22%  Similarity=0.341  Sum_probs=88.6

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH-----hHhC-CCccCCChhhhcCCCe---ee--
Q psy2372         238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK-----IISN-RSIVNIDITSAIQPPL---FI--  306 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~-----~~~~-~~~~~~~v~~im~~~~---~V--  306 (447)
                      +.+++.++++.++++.|.+++...+||++++ ++++|+++.+|+++.     ..++ ....+.++.++|++..   .+  
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~   81 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVVDSD-DNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDL   81 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccH
Confidence            4678999999999999999999999999854 899999999999862     2221 1111256889997532   22  


Q ss_pred             --CCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHH
Q psy2372         307 --PETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIH  347 (447)
Q Consensus       307 --~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle  347 (447)
                        ++++++.++++.|.+++.+.+||+|+. |.++|+||++|+++
T Consensus        82 ~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          82 EELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence              368999999999999999999999985 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.40  E-value=4.8e-12  Score=132.94  Aligned_cols=130  Identities=9%  Similarity=0.071  Sum_probs=106.6

Q ss_pred             EEEcCCCCHHHHHHHHHhCCCcEEEEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHH
Q psy2372         239 NFINIDDNIEKNLIKILDSSYNYFPVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTM  313 (447)
Q Consensus       239 ~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~  313 (447)
                      .++++++|+.++++.|.+++++.+||+|++  .++++|+|+.+|+++.. ...   +.+++++|+   +++++++++++.
T Consensus       108 ~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~~~---~~~V~dIMt~~~~~itv~~d~~l~  183 (502)
T PRK07107        108 SNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-MSL---DTKVKDFMTPFEKLVTANEGTTLK  183 (502)
T ss_pred             CEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-cCC---CCCHHHHhCCCCCeEEECCCCcHH
Confidence            489999999999999999999999999852  47999999999997532 112   267999997   456889999999


Q ss_pred             HHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHHH
Q psy2372         314 QLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDR  379 (447)
Q Consensus       314 ~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~  379 (447)
                      ++++.|.+++.+.+||+|++|+++|+||.+|+++.-.       .+...+.+.++++|-+.+..++
T Consensus       184 eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~~-------~P~a~~d~~grL~V~~av~~~~  242 (502)
T PRK07107        184 EANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHKE-------NPLELLDSSKRYVVGAGINTRD  242 (502)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhccc-------ChhhhhhhccCeeeeeccChhh
Confidence            9999999999999999999899999999999998541       1222234567787777776654

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.40  E-value=2.4e-12  Score=111.70  Aligned_cols=109  Identities=15%  Similarity=0.300  Sum_probs=92.5

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC----------------------CccCC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR----------------------SIVNI  294 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~----------------------~~~~~  294 (447)
                      ++.++++++++.++++.|.++++.++||++++ ++++|+++.+|+++....+.                      .....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGR   81 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-CCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCC
Confidence            56789999999999999999999999999854 89999999999987532210                      00125


Q ss_pred             ChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         295 DITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       295 ~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.++|+ +++++++++++.++++.|++.+.+.+||+| +|+++|+||++|+++
T Consensus        82 ~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          82 KVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            6888884 578999999999999999999999999999 799999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.39  E-value=5.7e-12  Score=104.15  Aligned_cols=104  Identities=20%  Similarity=0.302  Sum_probs=91.2

Q ss_pred             CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372         236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQ  314 (447)
Q Consensus       236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~  314 (447)
                      +++.+++.+.++.++++.|.+.+++.+||+++  ++++|+++.+|++...   ..   ..+.++|. ++.++++++++.+
T Consensus         2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~--~~~~g~v~~~~l~~~~---~~---~~~~~~~~~~~~~v~~~~~l~~   73 (107)
T cd04610           2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVDN--GKVVGIVSARDLLGKD---PD---ETVEEIMSKDLVVAVPEMDIMD   73 (107)
T ss_pred             CCcEEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhccC---cc---ccHHHhCCCCCeEECCCCCHHH
Confidence            35678999999999999999888999999984  8999999999998631   11   46889885 5688999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|++++.+.+||+|++|+++|++|.+|+++
T Consensus        74 ~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          74 AARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            999999999999999999999999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.39  E-value=4e-12  Score=104.65  Aligned_cols=102  Identities=19%  Similarity=0.207  Sum_probs=89.9

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~a  315 (447)
                      ++.+++.++++.++++.|.+++++.+||++ + ++++|+++.+|+++...   .   .++.++|. ++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~-~~~~Giv~~~~l~~~~~---~---~~~~~~~~~~~~~v~~~~~l~~~   73 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-D-GKLVGIITSRDVRRAHP---N---RLVADAMTREVVTISPEASLLEA   73 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEehHHhhcccc---c---CCHHHHccCCCEEECCCCCHHHH
Confidence            456789999999999999999999999997 4 89999999999987431   1   46888884 67799999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+++.+.+||+|+ |+++|+||.+|++.
T Consensus        74 ~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          74 KRLMEEKKIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHHHHcCCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            99999999999999997 99999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.39  E-value=7.7e-12  Score=131.51  Aligned_cols=170  Identities=11%  Similarity=0.180  Sum_probs=130.0

Q ss_pred             CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|+.++-..+...---|++.     +++.+.++++.+.+     +.|.  .+++++++++++.++.+.|.+++++.+|
T Consensus        59 ~~vt~~~ma~a~a~~GglGvi~~~~~~e~~~~~v~kvk~~e-----~g~i--~dpvtv~pd~tv~eA~~lm~~~~~s~vp  131 (495)
T PTZ00314         59 DTVTEHKMAIAMALMGGIGVIHNNCSIEEQVEEVRKVKRFE-----NGFI--MDPYVLSPNHTVADVLEIKEKKGFSSIL  131 (495)
T ss_pred             cccccHHHHHHHHHCCCeEEecCCCCHHHHHHHHhhccccc-----cccc--cCCeecCCCCCHHHHHHHHHHcCCcEEE
Confidence            4567777776665543334443     24556666665544     4565  3556899999999999999999999999


Q ss_pred             EEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEE
Q psy2372         264 VYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEG  338 (447)
Q Consensus       264 V~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iG  338 (447)
                      |++++  .++++|+|+.+|+....  ..   +.+++++|+   ++.++++++++.++++.|.+++.+.+||+|++|+++|
T Consensus       132 Vvd~~~~~gkLvGIVt~~DL~~~~--~~---~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liG  206 (495)
T PTZ00314        132 ITVDGKVGGKLLGIVTSRDIDFVK--DK---STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVA  206 (495)
T ss_pred             EEeCCccCCeEEEEEEHHHHhhcc--cC---CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEE
Confidence            99853  37999999999997432  12   267999997   4678999999999999999999999999999999999


Q ss_pred             EEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCH
Q psy2372         339 IITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTF  377 (447)
Q Consensus       339 iVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i  377 (447)
                      +||++|+++...       .+...+.++|+++|.+.+..
T Consensus       207 IIT~~DIl~~~~-------~p~a~~D~~GrL~Vgaavg~  238 (495)
T PTZ00314        207 LVSRSDLKKNRG-------YPNASLDSNGQLLVGAAIST  238 (495)
T ss_pred             EEEehHhhhccc-------CchhhhccCCCEEEEEEECC
Confidence            999999998752       12233456677888666653

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.39  E-value=4.7e-12  Score=105.07  Aligned_cols=105  Identities=21%  Similarity=0.305  Sum_probs=90.3

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCC-CCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPE-TISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~-~~~l~~  314 (447)
                      +...++.+.++.++.+.|.+++++++||++++ ++++|+++.+|++....  .   +.++.++|+ ++.++.+ ++++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~--~---~~~v~~~~~~~~~~~~~~~~~l~~   76 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-GKLVGIVTNRDLRFETD--L---DKPVSEVMTPENLLTTVEGTSLEE   76 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CEEEEEEEhhHeeeccc--C---CCCHHHhcccCceEEecCCCCHHH
Confidence            45678999999999999999999999999865 89999999999975421  1   257889985 3566666 999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|++++.+.+||+|++|+++|+||++|+++
T Consensus        77 ~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          77 ALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=5.7e-12  Score=106.90  Aligned_cols=109  Identities=19%  Similarity=0.319  Sum_probs=92.4

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC----C------ccCCChhhhc-CCCee
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR----S------IVNIDITSAI-QPPLF  305 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~----~------~~~~~v~~im-~~~~~  305 (447)
                      ++.+++.++++.++.+.|.+++++++||+|+  ++++|+++.+|+.+.+....    .      ....++.++| +++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED--NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPIT   79 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC--CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCee
Confidence            4668999999999999999999999999984  89999999999987643210    0      0013577877 56789


Q ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++++++.++++.|.+++.+.+||+|++|+++|++|+.|+++
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          80 VSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             eCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            999999999999999999999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.38  E-value=3.6e-12  Score=106.14  Aligned_cols=102  Identities=19%  Similarity=0.305  Sum_probs=87.8

Q ss_pred             EcCCCCHHHHHHHHHhCC-----CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372         241 INIDDNIEKNLIKILDSS-----YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQ  314 (447)
Q Consensus       241 v~~~~tl~e~~~~~~~~~-----~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~  314 (447)
                      +++++++.++++.|.+++     +..+||++++ ++++|+++.+|+++..   ..   .++.++++ ++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~~~~l~~~~---~~---~~v~~~~~~~~~~i~~~~~~~~   74 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-GRLLGVVSLRDLLLAD---PD---TPVSDIMDTDVISVSADDDQEE   74 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCC-CCEEEEEEHHHHhcCC---Cc---chHHHHhCCCCeEEcCCCCHHH
Confidence            578899999999998877     3688999854 8999999999998631   11   56888885 5689999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                      +++.|.+++.+.+||+|++|+++|+||.+|+++.+
T Consensus        75 ~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~~  109 (109)
T cd04606          75 VARLFEKYDLLALPVVDEEGRLVGIITVDDVIDVI  109 (109)
T ss_pred             HHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhhC
Confidence            99999999999999999889999999999999763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.38  E-value=1.1e-11  Score=130.36  Aligned_cols=172  Identities=15%  Similarity=0.105  Sum_probs=128.0

Q ss_pred             CCCHHHHHHHHHhchhcCc----c-chHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEE
Q psy2372         190 LITEEEIYKLFREGFDIGI----F-NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPV  264 (447)
Q Consensus       190 ~~s~~el~~lv~~~~~~g~----l-~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV  264 (447)
                      .+|+.++-..+...---|.    . .++++..++++.+.+   .+  |+  ++++++++++++.++.+.|.+++++.+||
T Consensus        64 ~vt~~~lA~Ama~aGGiGfI~~~as~E~q~~~Irkvk~~~---~g--mi--~dpvtV~pd~tV~dA~~lm~~~~~~~lpV  136 (505)
T PLN02274         64 TVTESDMAIAMAALGGIGIVHYNNTAEEQAAIVRKAKSRR---VG--FV--SDPVVKSPSSTISSLDELKASRGFSSVCV  136 (505)
T ss_pred             ccchHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHhhccc---cc--cc--CCCeeeCCCCcHHHHHHHHHhcCCceEEE
Confidence            4566666655544321111    1 234456677766542   22  55  46779999999999999999999999999


Q ss_pred             EeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEE
Q psy2372         265 YKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI  339 (447)
Q Consensus       265 ~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGi  339 (447)
                      +|++  .++++|+|+.+|+....  ..   +.++.++|++   ..++++++++.++++.|.+++.+.+||+|+.|+++|+
T Consensus       137 vD~~~~~GklvGIVT~~DL~~v~--~~---~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGv  211 (505)
T PLN02274        137 TETGTMGSKLLGYVTKRDWDFVN--DR---ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDL  211 (505)
T ss_pred             EeCCCcCCeEEEEEEHHHHhhcc--cc---CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEE
Confidence            9853  37999999999997543  12   2679999963   4699999999999999999999999999999999999


Q ss_pred             EeHHHHHHHHhcccccccccceEEecCCeEEEeccCCH
Q psy2372         340 ITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTF  377 (447)
Q Consensus       340 VT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i  377 (447)
                      ||++|+++.+.-..    ...-.+.++|+++|.+.+..
T Consensus       212 ITr~DIlk~~~~p~----~~~~~~d~~~~l~vgaavg~  245 (505)
T PLN02274        212 VTRTDVKRVKGYPK----LGKPSVGKDGKLLVGAAIGT  245 (505)
T ss_pred             EEHHHHHHHhhCcC----ccccccCCCCCEEEEEEEcC
Confidence            99999999874210    00002246788999888765

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=1.1e-11  Score=103.28  Aligned_cols=108  Identities=20%  Similarity=0.295  Sum_probs=91.5

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDITSAIQ-PPLFIPETISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~~im~-~~~~V~~~~~l~~  314 (447)
                      ++.++++++++.++++.|.+++++.+||+++  ++++|+++.+|+++....+. .....++.++|+ ++.++++++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   79 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN--EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNE   79 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHH
Confidence            4567899999999999999999999999985  49999999999998654321 111257889984 5678999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|.+++.+.+||+|++ +++|+||.+|+++
T Consensus        80 ~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          80 AAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            9999999999999999875 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.37  E-value=7.9e-12  Score=105.05  Aligned_cols=106  Identities=13%  Similarity=0.238  Sum_probs=89.7

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCC--CCC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPE--TIS  311 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~--~~~  311 (447)
                      ++.+++.++++.++.+.|.+++++++||+|+.  .++++|+++.+|++... . ..   .+++++|+ ++..+..  +++
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~-~-~~---~~v~~~~~~~~~~~~~~~~~~   77 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLT-D-SE---TPLSEVMTPREVLVVAPTGIT   77 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhh-c-cC---CCHHHhcCCCceEEECCCCCC
Confidence            45678999999999999999999999999851  48999999999997532 2 11   45889995 3456644  999


Q ss_pred             HHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         312 TMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       312 l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +.++++.|++++.+.+||+|++|+++|+||++|+++
T Consensus        78 l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          78 LEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             HHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            999999999999999999998899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.37  E-value=4.7e-12  Score=132.64  Aligned_cols=121  Identities=16%  Similarity=0.301  Sum_probs=100.8

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-  301 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-  301 (447)
                      ++.++++++|.+  ++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++....+....+.++.++|+ 
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~  408 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEA-GKVLGSVTLRELLSALFAGKANPDDAVSKVMSK  408 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC
Confidence            677899999984  67799999999999999999999999999854 89999999999998765432222257899995 


Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                      ++.++++++++.++++.|.+++  .. ||+++|+++|+||++|+++.+
T Consensus       409 ~~~~v~~~~~l~~a~~~~~~~~--~~-vV~~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       409 KFIQIGEGEKLSDLSKFLEKNS--SA-IVTEEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCeEECCcCcHHHHHHHHHHCC--ee-EEEECCEEEEEEEHHHHHHhh
Confidence            4569999999999999998753  34 455579999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.37  E-value=1.5e-11  Score=101.14  Aligned_cols=110  Identities=18%  Similarity=0.311  Sum_probs=93.3

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++..++.+.++.++.+.+.+++++++||++++ ++++|+++.+|+.+............+.++| .++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-GRLVGIVTERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEA   80 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCC-CCEEEEEeHHHHHHHHHhccCCccccHHHHhcCCceecCCCcCHHHH
Confidence            45678999999999999999999999999865 8999999999999877543321111256677 467899999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|.+.+.+.++|+|++|+++|++|.+|+++
T Consensus        81 ~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          81 AELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            99999999999999999999999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.36  E-value=1.1e-11  Score=102.37  Aligned_cols=98  Identities=20%  Similarity=0.312  Sum_probs=86.7

Q ss_pred             EEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHH
Q psy2372         240 FINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLET  318 (447)
Q Consensus       240 ~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~  318 (447)
                      ++++++++.++++.+.+.+++++||+++  ++++|+++.+|+++...       .++.++| .++.+++++.++.++++.
T Consensus         5 ~v~~~~~~~~~~~~~~~~~~~~~~V~d~--~~~~G~v~~~~l~~~~~-------~~~~~~~~~~~~~v~~~~~l~~a~~~   75 (104)
T cd04594           5 KVKDYDKVYEAKRIMIENDLLSLPVVDY--NKFLGAVYLKDIENATY-------GDVVDYIVRGIPYVRLTSTAEEAWEV   75 (104)
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEEC--CEEEEEEEHHHHhhhcc-------cchhhhhhcCCcEEcCCCCHHHHHHH
Confidence            6889999999999999999999999984  89999999999986421       3466777 457899999999999999


Q ss_pred             HHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         319 FKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       319 m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      |.+++.+.+||+| +|+++|++|.+|+++
T Consensus        76 ~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          76 MMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             HHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            9999999999998 499999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.34  E-value=1.7e-11  Score=103.62  Aligned_cols=109  Identities=16%  Similarity=0.256  Sum_probs=91.7

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC---------CccCCChhhhc-CCCeee
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR---------SIVNIDITSAI-QPPLFI  306 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~---------~~~~~~v~~im-~~~~~V  306 (447)
                      ++.+++.++++.++.+.+.+++++++||+|++ ++++|+++.+|+.+......         .....++.++| .++.++
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i   80 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-GRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITV   80 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-CcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEE
Confidence            35678999999999999999999999999865 89999999999987542110         01125688888 467789


Q ss_pred             CCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         307 PETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       307 ~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++++.++++.|.+++.+.+||+|+ |+++|++|..|+++
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          81 HPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             CCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            99999999999999999999999987 99999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=1.8e-11  Score=103.50  Aligned_cols=108  Identities=25%  Similarity=0.385  Sum_probs=91.9

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----------ccCCChhhhc-CCCee
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----------IVNIDITSAI-QPPLF  305 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----------~~~~~v~~im-~~~~~  305 (447)
                      ++..++.++++.++.+.|.+++++++||+++  ++++|+++.+|+++.......          ....++.++| +++.+
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVIT   79 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC--CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceE
Confidence            4567899999999999999999999999984  899999999999876442110          0124688888 56789


Q ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++++++.++++.|.+.+.+.+||+|+ |+++|++|.+|+++
T Consensus        80 v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          80 IEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             ECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            999999999999999999999999998 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.33  E-value=2.3e-11  Score=100.65  Aligned_cols=103  Identities=20%  Similarity=0.360  Sum_probs=89.3

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQL  315 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~a  315 (447)
                      ++.++..+.++.++++.+.+.+++++||++++ ++++|+++.++++...   ..   .++.++| +++.++++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~v~~~~l~~~~---~~---~~~~~~~~~~~~~v~~~~~l~~~   74 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-GELVGIITRKDLLRNP---EE---EQLALLMTRDPPTVSPDDDVKEA   74 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEHHHHHhcc---cc---chHHHHhcCCCceECCCCCHHHH
Confidence            46788999999999999999999999999865 8999999999998632   11   3577777 467889999999999


Q ss_pred             HHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         316 LETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       316 l~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++.|++++.+.+||+|+ |+++|++|.+|+++
T Consensus        75 ~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          75 AKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            99999999999999985 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.32  E-value=3.7e-11  Score=100.19  Aligned_cols=108  Identities=11%  Similarity=0.290  Sum_probs=90.6

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC-CCccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN-RSIVNIDITSAIQ-PPLFIPETISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~-~~~~~~~v~~im~-~~~~V~~~~~l~~  314 (447)
                      ++.+++.++++.++.+.|.+++++.++|.+ + ++++|+++.+|+++..... ......++.++|+ ++.++++++++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~   79 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R-GELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDE   79 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C-CEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHH
Confidence            466899999999999999888888888775 4 8999999999999876432 1111256889995 4678999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +++.|.+++.+.+||+|+ |+++|+||.+|++.
T Consensus        80 a~~~m~~~~~~~l~Vv~~-~~~~Gvvt~~dl~~  111 (112)
T cd04625          80 VRRLMVERHLRYLPVLDG-GTLLGVISFHDVAK  111 (112)
T ss_pred             HHHHHHHcCCCeeeEEEC-CEEEEEEEHHHhhc
Confidence            999999999999999985 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.32  E-value=2.2e-11  Score=101.27  Aligned_cols=100  Identities=24%  Similarity=0.310  Sum_probs=87.8

Q ss_pred             CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCH
Q psy2372         236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETIST  312 (447)
Q Consensus       236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l  312 (447)
                      .+...++++++++++.+.+.+.+++++||+++.  .++++|+++.+|+.+...+           +| +++.++++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~-----------~m~~~~~~v~~~~~l   70 (105)
T cd04591           2 PLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN-----------YIDPSPFTVSPRTSL   70 (105)
T ss_pred             CceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH-----------hccCCCceECCCCcH
Confidence            456789999999999999999999999999852  4899999999999876532           56 467799999999


Q ss_pred             HHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         313 MQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       313 ~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      .++++.|++++.+.+||++ +|+++|+||++|+++
T Consensus        71 ~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          71 EKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             HHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            9999999999999999995 699999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.30  E-value=3.5e-11  Score=105.81  Aligned_cols=108  Identities=20%  Similarity=0.316  Sum_probs=92.0

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC--------------------------
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS--------------------------  290 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~--------------------------  290 (447)
                      ++++++.++++.++.+.|.+.+++.+||+++  ++++|+++.+|+++.+.....                          
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG--GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEET   79 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC--CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHH
Confidence            4568999999999999999999999999984  899999999999876543210                          


Q ss_pred             ------ccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         291 ------IVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       291 ------~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                            ....++.++| +++.++++++++.++++.|++++.+.+||+|+ |+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          80 KRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                  0124577777 56789999999999999999999999999987 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.30  E-value=1.9e-11  Score=127.55  Aligned_cols=151  Identities=11%  Similarity=0.126  Sum_probs=115.1

Q ss_pred             CCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC
Q psy2372         189 DLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS  268 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~  268 (447)
                      ..+|+.++...+...-.-|+++++.. .-+..-.+...++.++|.+  +.+++++++++.++.+.|.+++++.+||+|+ 
T Consensus        52 dtvTe~~MAi~~A~~GGigvIh~n~~-i~~qae~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~-  127 (475)
T TIGR01303        52 TAVAGRRMAETVARRGGIVILPQDLP-IPAVKQTVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE-  127 (475)
T ss_pred             hhhHHHHHHHHHHHCCCEEEEeCCCC-HHHHHHHHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC-
Confidence            45677776655544333344443211 1111122335667788874  5678999999999999999999999999874 


Q ss_pred             CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         269 ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       269 ~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                       ++++|+|+.+|+....   ..   .++.++|+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++.
T Consensus       128 -gklvGIVT~rDL~~~~---~~---~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~  200 (475)
T TIGR01303       128 -DRPVGLVTDSDLLGVD---RF---TQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALR  200 (475)
T ss_pred             -CEEEEEEEHHHhhcCC---CC---CCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHH
Confidence             6899999999985431   11   56999994 6789999999999999999999999999998899999999999998


Q ss_pred             HHh
Q psy2372         348 SLI  350 (447)
Q Consensus       348 ~i~  350 (447)
                      ...
T Consensus       201 ~~~  203 (475)
T TIGR01303       201 ATI  203 (475)
T ss_pred             HHh
Confidence            653

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.28  E-value=4.8e-11  Score=100.62  Aligned_cols=109  Identities=13%  Similarity=0.229  Sum_probs=88.6

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCC-CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC---CccCCChhhhcC-CCeeeCCCCC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSS-YNYFPVYKKSISKIIGTLNTKTLFKKIISNR---SIVNIDITSAIQ-PPLFIPETIS  311 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~-~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~---~~~~~~v~~im~-~~~~V~~~~~  311 (447)
                      ++.+++.++++.++.+.+.+.+ ++.+||+++  ++++|+++.+|+++......   ...+.++.++|+ ++.+++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~   79 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTP   79 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC--CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCC
Confidence            3457899999999999998887 899999985  89999999999987543210   001256889995 5678999999


Q ss_pred             HHHHHHHHHHcCCc---eEEEEcCCCCEEEEEeHHHHHH
Q psy2372         312 TMQLLETFKKNKSE---LSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       312 l~~al~~m~~~~~~---~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      +.++++.|.+++.+   ..+|+|++|+++|+||..|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          80 LEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            99999999988753   4468888899999999999875

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=99.25  E-value=4.6e-11  Score=116.33  Aligned_cols=113  Identities=13%  Similarity=0.259  Sum_probs=97.3

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~  304 (447)
                      ++|+++|.+. ++.++++++++.++++.|.+.+++.+||+|++ ++++|+++.+|+++....+.. .+.+++++|+ ++.
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-g~~~Givt~~dl~~~~~~~~~-~~~~v~~im~~~~~  231 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-NQLVGVFTDGDLRRALLGGGS-LKSEVRDFMTLGPK  231 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-CCEEEEEEcHHHHHHHhcCCc-ccCcHHHhCCCCCe
Confidence            6799999853 26789999999999999999999999999855 899999999999986543221 2367999995 567


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEe
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIIT  341 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT  341 (447)
                      ++++++++.++++.|.+++.+.+||+|+.|+++|+|+
T Consensus       232 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       232 TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             EECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence            9999999999999999999999999999899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.22  E-value=2.5e-10  Score=95.72  Aligned_cols=108  Identities=19%  Similarity=0.375  Sum_probs=95.1

Q ss_pred             CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHH
Q psy2372         236 MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQ  314 (447)
Q Consensus       236 ~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~  314 (447)
                      .++.++.++.++.++...|.+++++.+||.++  ++++|+++.+|++++...+... ..++.++|. ++.+++++.++.+
T Consensus         7 ~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~--~~l~Giit~~di~~~~~~~~~~-~~~v~~v~~~~~~~~~~~~~~~~   83 (117)
T COG0517           7 KDVITVKPDTSVRDALLLMSENGVSAVPVVDD--GKLVGIITERDILRALAAGGKR-LLPVKEVMTKPVVTVDPDTPLEE   83 (117)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC--CEEEEEEEHHHHHHHHhccCCc-cccHHHhccCCcEEECCCCCHHH
Confidence            57789999999999999999999999999974  3799999999999988765431 015889996 7789999999999


Q ss_pred             HHHHHHH-cCCceEEEEcCCC-CEEEEEeHHHHH
Q psy2372         315 LLETFKK-NKSELSLVIDEYG-ELEGIITINDII  346 (447)
Q Consensus       315 al~~m~~-~~~~~a~VvDe~G-~~iGiVT~~DIl  346 (447)
                      +.+.|.+ ++.+.+||+|+.+ +++|++|..|++
T Consensus        84 ~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          84 ALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            9999999 6999999999885 999999999973

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.11  E-value=3.6e-10  Score=116.15  Aligned_cols=124  Identities=15%  Similarity=0.211  Sum_probs=107.9

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-  301 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-  301 (447)
                      +--.+++++|+  ...+++++.+++.+|.++|.+.|.+.+.+++++ +...|||+.+|+......+..+...++.++|+ 
T Consensus       146 ~~~trv~~~~~--~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~  222 (610)
T COG2905         146 FILTRVGEVKT--LPAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-GPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTS  222 (610)
T ss_pred             HHHHHHHHHhc--CCCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-CCccceeehHHHHHHHHhcCCCcccchhhhhcc
Confidence            33457888888  456689999999999999999999988888855 89999999999998876654445578999995 


Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      |+++|..+.-+.||+-.|.+++++.+||.+ +|+++|+||+.||+...-
T Consensus       223 p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         223 PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence            778999999999999999999999999996 699999999999998753

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.07  E-value=1.4e-09  Score=94.78  Aligned_cols=97  Identities=10%  Similarity=0.029  Sum_probs=78.9

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccC-----------CChhhhc-----
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVN-----------IDITSAI-----  300 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~-----------~~v~~im-----  300 (447)
                      ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|++++.........           ..+.++|     
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~   80 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-DFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGIS   80 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhh
Confidence            56789999999999999999999999999865 899999999999987654322100           0123344     


Q ss_pred             -----CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCC
Q psy2372         301 -----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYG  334 (447)
Q Consensus       301 -----~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G  334 (447)
                           ++++++++++++.++++.|.+++.+.+||+|+.+
T Consensus        81 ~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~~  119 (133)
T cd04592          81 YGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRGV  119 (133)
T ss_pred             hcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCCc
Confidence                 3578999999999999999999999999999754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.02  E-value=2.5e-09  Score=114.67  Aligned_cols=123  Identities=14%  Similarity=0.179  Sum_probs=103.5

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC---------------
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR---------------  289 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~---------------  289 (447)
                      ..+|+++|++  ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+...+..               
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~i  143 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILDPEILSKSPTSLENI  143 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHHH
Confidence            3579999984  67799999999999999999999999999865 89999999999987433210               


Q ss_pred             ----------------------------------------------C---------------------------------
Q psy2372         290 ----------------------------------------------S---------------------------------  290 (447)
Q Consensus       290 ----------------------------------------------~---------------------------------  290 (447)
                                                                    .                                 
T Consensus       144 ~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~~  223 (546)
T PRK14869        144 IRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAKE  223 (546)
T ss_pred             HHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHh
Confidence                                                          0                                 


Q ss_pred             -------------------ccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         291 -------------------IVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       291 -------------------~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                                         ....+++++|+  ++.++++++++.++.+.|.+++.+.+||+|++|+++|+||..|+++..
T Consensus       224 ~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        224 NGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             CCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccc
Confidence                               01135677886  578999999999999999999999999999999999999999999854


Q ss_pred             h
Q psy2372         350 I  350 (447)
Q Consensus       350 ~  350 (447)
                      -
T Consensus       304 ~  304 (546)
T PRK14869        304 R  304 (546)
T ss_pred             c
Confidence            3

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.87  E-value=8.8e-09  Score=75.63  Aligned_cols=56  Identities=30%  Similarity=0.495  Sum_probs=51.7

Q ss_pred             hhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         296 ITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       296 v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++++|+ +++++++++++.++++.|++++.+.+||+|++|+++|++|.+|+++.+.+
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~~   57 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALLD   57 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHHG
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhhC
Confidence            467885 77899999999999999999999999999999999999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.69  E-value=3.7e-08  Score=72.29  Aligned_cols=56  Identities=23%  Similarity=0.428  Sum_probs=51.3

Q ss_pred             eceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372         228 AITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII  286 (447)
Q Consensus       228 V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~  286 (447)
                      |+++|++  ++.++++++++.++.+.|.+++++++||+|++ ++++|+++.+|+++++.
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-GKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-SBEEEEEEHHHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CEEEEEEEHHHHHhhhh
Confidence            5789985  78899999999999999999999999999866 99999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=3.2e-07  Score=94.35  Aligned_cols=120  Identities=17%  Similarity=0.202  Sum_probs=96.2

Q ss_pred             eeeceeeeeCCc-eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCC
Q psy2372         226 QCAITLMTPRMK-VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPP  303 (447)
Q Consensus       226 ~~V~dvM~pr~~-v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~  303 (447)
                      .++.++|.+... ......+.+..++++.|.+.+.++..|+|++ +++.|+++.+++.+...++     ..+.+.+ ...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~  347 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-NKFVGAVSIDSLKTALTQQ-----QGLDAALIDAP  347 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-CcEEEEEeHHHHHhhhhcC-----CchhhhhccCC
Confidence            466778853221 1234466788999999999999999999865 8999999999998765422     3466666 456


Q ss_pred             eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      .++++++++.+++..+.+.... +||+|+.|+++|+||..+++..+.+.
T Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        348 LAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             ceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            7999999999999999987766 89999999999999999999998653

>KOG1764|consensus

Probab=98.62  E-value=2.8e-07  Score=94.04  Aligned_cols=116  Identities=16%  Similarity=0.269  Sum_probs=96.7

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-cCCC-hhhhc-------CCCeeeC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-VNID-ITSAI-------QPPLFIP  307 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-~~~~-v~~im-------~~~~~V~  307 (447)
                      ++..+..++++.++++.|.+.+.+.+||++.+ ++.+|.++..|+.....++.-. .... +....       .+++++.
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~  316 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDEN-GKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCR  316 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-CceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEe
Confidence            58899999999999999999999999999976 6669999999999876543211 1112 22221       2357899


Q ss_pred             CCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         308 ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       308 ~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ++.++.+++..|.+++.|.+.|||+.|.++|+||+.|++..++-.-
T Consensus       317 ~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~p  362 (381)
T KOG1764|consen  317 PTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLTP  362 (381)
T ss_pred             ecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999998653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.50  E-value=1.9e-06  Score=87.53  Aligned_cols=105  Identities=14%  Similarity=0.191  Sum_probs=89.6

Q ss_pred             EEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHH
Q psy2372         240 FINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLET  318 (447)
Q Consensus       240 ~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~  318 (447)
                      ....+.+..++++.+...+.+...|++++ +++.|+++.+++..+....     ..+.+.+ ....++++++++.+++..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (363)
T TIGR01186       254 TKTADKGPRSALQLMRDERVDSLYVVDRQ-NKLVGVVDVESIKQARKKA-----QGLQDVLIDDIYTVDAGTLLRETVRK  327 (363)
T ss_pred             eecCCCCHHHHHHHHHhcCCceEEEEcCC-CCEEEEEeHHHHHHHhhcC-----CchhhhhccCCceECCCCcHHHHHHH
Confidence            45567788999999999999999999855 8999999999998765432     3466666 456799999999999999


Q ss_pred             HHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         319 FKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       319 m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      |.+++.. +||+|+.|+++|+||..++++.+.+
T Consensus       328 ~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       328 VLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             HHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            9999888 9999999999999999999999865

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG0474|consensus

Probab=98.47  E-value=2.4e-07  Score=96.40  Aligned_cols=127  Identities=20%  Similarity=0.298  Sum_probs=101.3

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCC----CeEEEEEEhhhHHHHhHhC----C--C--
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSI----SKIIGTLNTKTLFKKIISN----R--S--  290 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~----~~ivGiv~~~DLl~~~~~~----~--~--  290 (447)
                      +++.+++|+|++  ++++++.-+.+..+.+.++.+.|+.|||+|+..    +++.|++-...++..+.+.    +  .  
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~  656 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTF  656 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCcccc
Confidence            456789999995  899999999999999999999999999998643    4678988888887544321    0  0  


Q ss_pred             -----------------c-------------cCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEE
Q psy2372         291 -----------------I-------------VNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI  339 (447)
Q Consensus       291 -----------------~-------------~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGi  339 (447)
                                       +             .-.++..+|. .|++|+++|++..++..||.-+.+...|++...+.+|+
T Consensus       657 ~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gi  736 (762)
T KOG0474|consen  657 DLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGI  736 (762)
T ss_pred             CcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEE
Confidence                             0             0013344553 47899999999999999999999999999998999999


Q ss_pred             EeHHHHH-HHHhc
Q psy2372         340 ITINDII-HSLIG  351 (447)
Q Consensus       340 VT~~DIl-e~i~g  351 (447)
                      +|++|+. +.+.|
T Consensus       737 lTR~D~~~~~~l~  749 (762)
T KOG0474|consen  737 LTRKDLARYRILG  749 (762)
T ss_pred             EehhhhhhHHHhc
Confidence            9999998 44443

>KOG2550|consensus

Probab=98.43  E-value=9.1e-07  Score=88.02  Aligned_cols=170  Identities=16%  Similarity=0.170  Sum_probs=128.2

Q ss_pred             CCCCHHHHHHHHHhchhcCcc-----chHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIF-----NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l-----~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|+.|.-..+...---|.+     .+.|..+++++-.|+.--+   +    +.+.+.++.++.++++.-..++++.+|
T Consensus        71 DTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~~g~~---~----~p~v~sp~~tvg~v~~~k~~~gF~g~p  143 (503)
T KOG2550|consen   71 DTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYENGFI---N----NPIVISPTTTVGEVKEAKEKHGFSGIP  143 (503)
T ss_pred             cccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhhcccc---c----CCcccCCcccchhhhhhcccccccccc
Confidence            457788887776655433433     3467788888777764332   2    345688999999999999999999999


Q ss_pred             EEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEE
Q psy2372         264 VYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGII  340 (447)
Q Consensus       264 V~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiV  340 (447)
                      +.++.  ..+++|+|+.+|+-..  ++..   ..+.++|. .+.+.|...++.++-+.+++++..-.||||+.|+++-++
T Consensus       144 vTe~g~~~~KLvG~vtsrdi~f~--~~~~---~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~  218 (503)
T KOG2550|consen  144 VTEDGKRGSKLVGIITSRDIQFL--EDNS---LLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAML  218 (503)
T ss_pred             cccCCcccceeEEEEehhhhhhh--hccc---chhhhhcccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeee
Confidence            99632  4789999999999654  3333   67899995 457899999999999999999999999999999999999


Q ss_pred             eHHHHHHHHhcccccccccceEEecCCeEEEeccCCH
Q psy2372         341 TINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTF  377 (447)
Q Consensus       341 T~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i  377 (447)
                      ++.|+...-       +.+...+.++..|++.+.+.=
T Consensus       219 ~rtDl~k~~-------~yPlask~~~kqll~gAaiGT  248 (503)
T KOG2550|consen  219 SRTDLMKNR-------DYPLASKDSTKQLLCGAAIGT  248 (503)
T ss_pred             ehhhhhhhc-------CCCccccCcccceeeeecccc
Confidence            999998753       122233345566776655543

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.09  E-value=0.00075  Score=69.90  Aligned_cols=118  Identities=12%  Similarity=0.109  Sum_probs=79.5

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc----C
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI----Q  301 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im----~  301 (447)
                      ..++++|.   ++.++++++++.++++.|++++....+|+|+. |..+|+|+..|++..+..+-.+....-.+.+    .
T Consensus       255 ~~l~~~~~---~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~-G~~~GiVT~eDileeivgei~de~d~~~~~i~~~~~  330 (408)
T TIGR03520       255 FDWQSLLR---EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEY-GGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKIDD  330 (408)
T ss_pred             CCHHHHcC---CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCC-CCEEEEEEHHHHHHHHhCCCCCcCCcCccceEEeCC
Confidence            34677785   35689999999999999999999999999864 8899999999999987543211101111222    2


Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ..+.++..+++.++.+.|.-.....-+.-+++.      |....+-+.+|.+
T Consensus       331 ~~~~v~G~~~l~~l~~~l~~~~~~~~~~~~~~~------Tl~G~i~~~l~~i  376 (408)
T TIGR03520       331 NNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAE------TLAGFLLEISGGF  376 (408)
T ss_pred             CeEEEEeccCHHHHHHHhCCCccccCCcCCCCc------cHHHHHHHHhCcC
Confidence            346788899999999888542111111112333      4444555667776

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>KOG0475|consensus

Probab=97.94  E-value=5e-05  Score=79.64  Aligned_cols=121  Identities=24%  Similarity=0.373  Sum_probs=92.6

Q ss_pred             eceeeeeCC---ceEEEcCC-CCHHHHHHHHHhCCCcEEEEE-eCCCCeEEEEEEhhhHHHHhHhCC-------------
Q psy2372         228 AITLMTPRM---KVNFINID-DNIEKNLIKILDSSYNYFPVY-KKSISKIIGTLNTKTLFKKIISNR-------------  289 (447)
Q Consensus       228 V~dvM~pr~---~v~~v~~~-~tl~e~~~~~~~~~~s~iPV~-~~~~~~ivGiv~~~DLl~~~~~~~-------------  289 (447)
                      ..++|.|+.   ....++.+ .+++|....|.++.++.+||+ +++..+++|++..+|+...+.+.+             
T Consensus       545 ~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f  624 (696)
T KOG0475|consen  545 AIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYF  624 (696)
T ss_pred             hhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceeccccc
Confidence            344554442   34555555 799999999999999999988 445689999999999987654210             


Q ss_pred             ----------CccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         290 ----------SIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       290 ----------~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                                .+...+++++|. .|.++...++...++++|++-+.....|. ++|++.|+||..|++...
T Consensus       625 ~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  625 NDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhh
Confidence                      011235667774 57899999999999999999888888664 689999999999998753

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.93  E-value=2.5e-05  Score=65.03  Aligned_cols=55  Identities=16%  Similarity=0.239  Sum_probs=49.1

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .++.++|.+  ++.++++++++.++++.|.+++.+++||+|++ ++++|+++.+|+++
T Consensus        56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-GKLVGTIYERELLR  110 (111)
T ss_pred             cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CeEEEEEEhHHhhc
Confidence            468899963  56789999999999999999999999999855 89999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=97.91  E-value=3.1e-05  Score=73.06  Aligned_cols=89  Identities=12%  Similarity=0.173  Sum_probs=71.8

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccccccceEEecCCeEEE
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSYQEEIEFCEDGSWII  371 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~~~~~~~~~~~~~~v  371 (447)
                      .++.++| ++++++.+++++.++.+.|.+++++-+||+|+ ++++|++|..|+.+++...- +-. -..+.  ..+.+.+
T Consensus       172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~k-V~~~M--~k~vitI  247 (294)
T COG2524         172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAK-VSDYM--RKNVITI  247 (294)
T ss_pred             chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCcccc-HHHHh--ccCCceE
Confidence            6789999 57889999999999999999999999999996 69999999999999998642 221 11111  3456778


Q ss_pred             eccCCHHHHHHHhCC
Q psy2372         372 SASMTFDRFKELLSN  386 (447)
Q Consensus       372 ~g~~~i~~~~~~l~~  386 (447)
                      +.+..+.|.-|.++.
T Consensus       248 ~eDe~i~dAir~M~~  262 (294)
T COG2524         248 NEDEDIYDAIRLMNK  262 (294)
T ss_pred             cCchhHHHHHHHHHh
Confidence            888999998777654

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.81  E-value=2.5e-05  Score=81.89  Aligned_cols=112  Identities=15%  Similarity=0.126  Sum_probs=89.3

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCC
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPP  303 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~  303 (447)
                      .+.+++++|+|  ++.++++++++.++.+.|+++++..+||+|++ |+++|+|+.+|+++.+.+.      .-.++|+..
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-g~lvGiIt~~Dil~~l~~~------~~ed~~~~~  263 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-GRLVGIVTVDDIIDVIQSE------ATEDFYMIA  263 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-CeEEEEEEHHHHHHHHHhh------hHHHHHHhc
Confidence            45679999985  56789999999999999999999999999855 8999999999999988652      246777533


Q ss_pred             -eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         304 -LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       304 -~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                       .+..++..+.+++..|.+++...++|.    .+.|++| ..++...
T Consensus       264 gv~~~~~~~l~~~~~~~~~~R~~wL~v~----~~~~~~t-~~ii~~f  305 (449)
T TIGR00400       264 AVKPLDDSYFDTSILVMAKNRIIWLLVL----LVSSTFT-ATIISNY  305 (449)
T ss_pred             CCCCCcchhhhchHHHHHHhccchHHHH----HHHHHHH-HHHHHHH
Confidence             334456778999999999999888775    4677777 6666653

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.79  E-value=5.3e-05  Score=63.71  Aligned_cols=54  Identities=20%  Similarity=0.287  Sum_probs=48.6

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      .++.++| +++.++++++++.++++.|++++.+.+||+|+.|+++|+||.+|+.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            4588888 46789999999999999999999999999999899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.78  E-value=7.5e-05  Score=51.11  Aligned_cols=48  Identities=29%  Similarity=0.391  Sum_probs=43.3

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                      ++.++++++++.++++.|++.+.+.++|+|++|++.|+++..|+...+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        1 DVVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             CceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            356889999999999999999999999999889999999999998754

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.73  E-value=8.1e-05  Score=61.56  Aligned_cols=59  Identities=17%  Similarity=0.241  Sum_probs=50.8

Q ss_pred             ccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         222 KLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       222 ~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +....++.++|.+  ++.++++++++.++++.+.+++.+++||++++ ++++|+++..|+++
T Consensus        55 ~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~~di~~  113 (114)
T cd04604          55 DILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDN-GRPVGVLHIHDLLR  113 (114)
T ss_pred             ccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-CCEEEEEEHHHhhc
Confidence            4444579999975  45689999999999999999999999999854 89999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.71  E-value=0.00019  Score=60.43  Aligned_cols=84  Identities=14%  Similarity=0.143  Sum_probs=61.2

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc--cccc-eEEe---cCCeEEEecc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS--YQEE-IEFC---EDGSWIISAS  374 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~--~~~~-~~~~---~~~~~~v~g~  374 (447)
                      +..++++++++.++++.|.+++.+.+||+|+.|+++|++|..|++.....+. +..  .-.. +...   .++...+...
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   81 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPD   81 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCC
Confidence            5678999999999999999999999999998899999999999997654332 111  0000 1111   1334678888


Q ss_pred             CCHHHHHHHhC
Q psy2372         375 MTFDRFKELLS  385 (447)
Q Consensus       375 ~~i~~~~~~l~  385 (447)
                      .+++++.+.+.
T Consensus        82 ~~l~~~~~~m~   92 (120)
T cd04641          82 DCLRTIFDLIV   92 (120)
T ss_pred             CcHHHHHHHHH
Confidence            88888766654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.71  E-value=1.7e-05  Score=76.13  Aligned_cols=55  Identities=16%  Similarity=0.266  Sum_probs=52.3

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      .+..++| |++.++++++++.++.++|++++++-.||+||+.+++|+||..|+++.
T Consensus       245 LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~  300 (382)
T COG3448         245 LTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKH  300 (382)
T ss_pred             ccHHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhc
Confidence            6789999 789999999999999999999999999999999999999999999984

>KOG1764|consensus

Probab=97.68  E-value=0.00023  Score=72.77  Aligned_cols=119  Identities=16%  Similarity=0.210  Sum_probs=97.7

Q ss_pred             eeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc------cCCChhhhc----CC
Q psy2372         233 TPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI------VNIDITSAI----QP  302 (447)
Q Consensus       233 ~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~------~~~~v~~im----~~  302 (447)
                      +++...+.+.+..++-++...+.++++.++||.|.+.+++..+++.+-+++.+......      ...++.+.-    ..
T Consensus       159 ~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~  238 (381)
T KOG1764|consen  159 TLKPPFVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSN  238 (381)
T ss_pred             ccCCCceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhh
Confidence            44455578999999999999999999999999996668999999999999987643321      012233321    23


Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ..++.+++++.+|+++|..++..-+||||++|+.+|..++.|+......
T Consensus       239 i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~  287 (381)
T KOG1764|consen  239 IASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLARE  287 (381)
T ss_pred             heeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhc
Confidence            6789999999999999999999999999999999999999999988764

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.68  E-value=0.00025  Score=59.47  Aligned_cols=83  Identities=19%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEEeccCCHHH
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWIISASMTFDR  379 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v~g~~~i~~  379 (447)
                      ++.++++++++.++++.|.+++...+||+|++|+++|+||..|+.....++. ... .-..+.........++...++.+
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~   81 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLE   81 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence            5678999999999999999899999999998899999999999999876432 111 11112211123457888888887


Q ss_pred             HHHHh
Q psy2372         380 FKELL  384 (447)
Q Consensus       380 ~~~~l  384 (447)
                      ..+.+
T Consensus        82 ~~~~~   86 (118)
T cd04617          82 AAKKL   86 (118)
T ss_pred             HHHHH
Confidence            65554

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.67  E-value=0.00024  Score=60.57  Aligned_cols=83  Identities=18%  Similarity=0.289  Sum_probs=62.9

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEEeccCCHH
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWIISASMTFD  378 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v~g~~~i~  378 (447)
                      +++.++++++++.++++.|++++.+.+||+|+.|+++|++|.+|++..+..+. +.+ .-..+.  ..+...++...++.
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im--~~~~~~v~~~~~~~   79 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKAL--YKQFKRVNKNDTLG   79 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHh--hccceecCCCCCHH
Confidence            46789999999999999999999999999999899999999999998776543 222 111111  23345677778888


Q ss_pred             HHHHHhC
Q psy2372         379 RFKELLS  385 (447)
Q Consensus       379 ~~~~~l~  385 (447)
                      ++.+.+.
T Consensus        80 ~v~~~~~   86 (124)
T cd04608          80 KLSRILE   86 (124)
T ss_pred             HHHhhcc
Confidence            8777553

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.66  E-value=0.00013  Score=61.33  Aligned_cols=55  Identities=13%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+++++|.+  ++.+++.++++.++++.|.++++..+||+|++ ++++|+++.+|+.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-GTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEEHHHhhc
Confidence            569999975  56689999999999999999999999999854 79999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.65  E-value=7.4e-05  Score=62.14  Aligned_cols=58  Identities=19%  Similarity=0.365  Sum_probs=50.4

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.++.++|.+...+.++++++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~-~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS-GQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC-CcEEEEEeccceec
Confidence            45788999865556689999999999999999999999999854 79999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.63  E-value=8.7e-05  Score=61.95  Aligned_cols=56  Identities=18%  Similarity=0.211  Sum_probs=49.3

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.++.++|.  +++.++++++++.++++.|.+++..++||++++ ++++|+++.+|+++
T Consensus        58 ~~~v~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~~~dl~~  113 (114)
T cd04619          58 TAPVENVMT--RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-ARPLGVLNARDALK  113 (114)
T ss_pred             cCCHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEhHhhcc
Confidence            456888896  466789999999999999999999999999854 79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.55  E-value=0.00033  Score=71.76  Aligned_cols=118  Identities=16%  Similarity=0.231  Sum_probs=81.6

Q ss_pred             HHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCC
Q psy2372         216 LASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNID  295 (447)
Q Consensus       216 ~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~  295 (447)
                      ++..+...+-.+++++|.|....  ...+ .. .+++.   ++.++..|+|+      |+++..+..........   ..
T Consensus       264 ~~~~~~~~~~l~a~~~m~~~~~~--~~~~-~~-~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~  327 (382)
T TIGR03415       264 FVAHTNPLNVLTARSLMRPLTDL--EHVD-GG-WCVSD---RRDTWLFTIDK------QVRRRDAKLPVQAWAAE---QE  327 (382)
T ss_pred             HhcccCcccceeHHHHhcccccc--cccC-cc-hhhhh---cccceeEeecc------ceecccchHhHhhcccc---cc
Confidence            33444445566788999654332  2222 22 34433   78888888873      88888887654432122   34


Q ss_pred             hhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         296 ITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       296 v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      +.++.+...++++++++.+++..+.+.+.+. +|+|+ |+++|+|+..++++.+.+
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~-~~~~g~~~~~~~~~~~~~  381 (382)
T TIGR03415       328 VESLEAAPTVINPDTLMRDVLAARHRTGGAI-LLVEN-GRIVGVIGDDNIYHALLG  381 (382)
T ss_pred             hhhhcccCcccCCCCcHHHHHHHHhcCCCCe-EEeeC-CeEEEEEeHHHHHHHHhc
Confidence            6665567889999999999999888877664 57786 999999999999999865

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.55  E-value=0.00017  Score=58.96  Aligned_cols=46  Identities=15%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.++++++++.++++.|.+++.+++||++++.++++|+++.+|+++
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            6689999999999999999999999999854479999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.53  E-value=0.00026  Score=57.48  Aligned_cols=48  Identities=23%  Similarity=0.245  Sum_probs=44.0

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      +++..+++++++.++++.|.+++...+||+|++|+++|++|.+|+...
T Consensus         1 ~~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           1 RNVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CCccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence            457789999999999999999999999999999999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.52  E-value=0.00035  Score=73.99  Aligned_cols=115  Identities=16%  Similarity=0.202  Sum_probs=81.6

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----ccCCChhhhc
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----IVNIDITSAI  300 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----~~~~~v~~im  300 (447)
                      +.+++++|++ .+++++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++.......    .....+...|
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai  223 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-GRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAV  223 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeec
Confidence            4578999973 467889999999999999999999999999865 899999999999987532110    0001122222


Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcC-CCCEEEEEeHHHHHHH
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDE-YGELEGIITINDIIHS  348 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe-~G~~iGiVT~~DIle~  348 (447)
                          .+++  .-.+..+.|.+.+.+.+ |+|. +|+..|+++.-+.+..
T Consensus       224 ----~~~~--~~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        224 ----GVGA--DNEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             ----ccCc--chHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence                2222  22677778888888865 5553 5777777766665554

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.51  E-value=0.00013  Score=62.12  Aligned_cols=60  Identities=13%  Similarity=0.224  Sum_probs=48.2

Q ss_pred             CceeeceeeeeCCceEEEc----CCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFIN----IDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~----~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+.+++++|.+......++    +++++.++++.|.+++.+++||+|++.++++|+|+.+|+++
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            4567899997543333443    68899999999999999999999854368999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.51  E-value=0.00026  Score=58.72  Aligned_cols=55  Identities=13%  Similarity=0.227  Sum_probs=48.3

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .++.++|.+  .+.++++++++.++++.|.+++.+++||++++ ++++|+++.+|++.
T Consensus        58 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~di~~  112 (113)
T cd04607          58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEE-GRVVGLATLDDLLS  112 (113)
T ss_pred             CCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEhHHhcc
Confidence            468889964  46689999999999999999999999999854 79999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.51  E-value=0.00034  Score=57.86  Aligned_cols=51  Identities=24%  Similarity=0.413  Sum_probs=45.8

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++..+..
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~   51 (114)
T cd04629           1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLE   51 (114)
T ss_pred             CCCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhh
Confidence            357789999999999999998888889999998999999999999987764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.50  E-value=0.00055  Score=56.87  Aligned_cols=50  Identities=18%  Similarity=0.278  Sum_probs=45.3

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++++.|++++.+.+||+|++ |+++|++|.+|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~   52 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVA   52 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHh
Confidence            46789999999999999999999999999987 899999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.49  E-value=0.00068  Score=55.76  Aligned_cols=50  Identities=16%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++.+++++.++.++++.|.+++.+.+||+|++|+++|++|..|++..+..
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~   51 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVAL   51 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhh
Confidence            56788999999999999999999999999988999999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.49  E-value=0.00033  Score=60.84  Aligned_cols=50  Identities=28%  Similarity=0.332  Sum_probs=46.0

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      .+.++++++++.++++.|.+++.+.+||+|+.|+++|+||..|++..+..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~   51 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFT   51 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhh
Confidence            46789999999999999999999999999999999999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.49  E-value=0.00016  Score=76.50  Aligned_cols=62  Identities=19%  Similarity=0.142  Sum_probs=55.8

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI  285 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~  285 (447)
                      ..+.+|+++|+|..+++++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+++..
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-GNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEhHHHHhcc
Confidence            3457899999987788899999999999999999999999999854 7999999999999864

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.49  E-value=0.00038  Score=69.81  Aligned_cols=89  Identities=13%  Similarity=0.199  Sum_probs=64.3

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc--ccccccceEEecCCe
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI--SNSYQEEIEFCEDGS  368 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei--~e~~~~~~~~~~~~~  368 (447)
                      .+++++|.   ++.++++++++.++++.|.+++.+..||+|++|+++|+||..|+......+.  ++..-..+.  ..+.
T Consensus       202 ~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im--~~~~  279 (326)
T PRK10892        202 LRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVM--TPGG  279 (326)
T ss_pred             CcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhc--CCCC
Confidence            57899995   6789999999999999999988888888998999999999999987543221  111001111  1234


Q ss_pred             EEEeccCCHHHHHHHh
Q psy2372         369 WIISASMTFDRFKELL  384 (447)
Q Consensus       369 ~~v~g~~~i~~~~~~l  384 (447)
                      ..++...++.+..+.+
T Consensus       280 ~~v~~~~~l~~a~~~m  295 (326)
T PRK10892        280 IRVRPGILAVDALNLM  295 (326)
T ss_pred             EEECCCCCHHHHHHHH
Confidence            5667777777765544

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.49  E-value=0.00025  Score=58.94  Aligned_cols=56  Identities=18%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             ceeeceeeeeCCceEEEcCC--CCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINID--DNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~--~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.++.++|.+  ++.+++++  +++.++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-GQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-CCEEEEEEhHHhhc
Confidence            4568888864  56677776  689999999999999999999865 89999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.49  E-value=0.00074  Score=71.63  Aligned_cols=63  Identities=10%  Similarity=0.078  Sum_probs=56.4

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      .+.+|.++|++...+.++++++++.++++.|.+++..++||+|++ ++++|+|+.+|+++....
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-GELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhC
Confidence            456799999986668899999999999999999999999999854 799999999999987753

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.48  E-value=0.00042  Score=72.93  Aligned_cols=99  Identities=10%  Similarity=0.141  Sum_probs=69.9

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhh-hcCCCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITS-AIQPPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~-im~~~~  304 (447)
                      ..+.++|+  .++.++++++++.|+++.|.+++...+||+|++ ++++|+|+.+|+++.......   ...+. .+-. -
T Consensus       148 ~~V~diMt--~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-g~lvGIIT~~DIl~~~~~~~~---~~~~g~l~V~-a  220 (479)
T PRK07807        148 TQVRDVMS--TDLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-GRLVGVLTRTGALRATIYTPA---VDAAGRLRVA-A  220 (479)
T ss_pred             CCHHHhcc--CCceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHhhCCch---hhhhhccchH-h
Confidence            46999998  477899999999999999999999999999865 799999999999987643211   01111 0000 0


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcC
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDE  332 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe  332 (447)
                      -+.......+.++.|.+.+.+. +++|-
T Consensus       221 av~~~~~~~~~a~~Lv~aGvd~-i~~D~  247 (479)
T PRK07807        221 AVGINGDVAAKARALLEAGVDV-LVVDT  247 (479)
T ss_pred             hhccChhHHHHHHHHHHhCCCE-EEEec
Confidence            1222234567777777777777 46663

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.47  E-value=0.00053  Score=56.51  Aligned_cols=82  Identities=18%  Similarity=0.277  Sum_probs=59.9

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEEeccCCHH
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWIISASMTFD  378 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v~g~~~i~  378 (447)
                      |++.++++++++.++++.|++++...+||+|++|++.|++|..|+...+..+- .+. .-..+.  ....+.++...++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~--~~~~~~v~~~~~~~   78 (114)
T cd04613           1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIM--TKPPVVVYPEDSLE   78 (114)
T ss_pred             CCceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhc--cCCCcEEcCCCCHH
Confidence            46788999999999999999988889999998899999999999987654322 111 000111  22346677778877


Q ss_pred             HHHHHh
Q psy2372         379 RFKELL  384 (447)
Q Consensus       379 ~~~~~l  384 (447)
                      ++.+.+
T Consensus        79 ~~~~~~   84 (114)
T cd04613          79 DALKKF   84 (114)
T ss_pred             HHHHHH
Confidence            766655

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.47  E-value=0.00068  Score=55.87  Aligned_cols=81  Identities=20%  Similarity=0.208  Sum_probs=58.4

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEEeccCCHH
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWIISASMTFD  378 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v~g~~~i~  378 (447)
                      +++.++++++++.++++.|.+++...++|+|+ |++.|+++.+|+.+.+..+. +.+ .-..+.  ..+.+.++-..++.
T Consensus         1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~--~~~~~~v~~~~~l~   77 (111)
T cd04589           1 RPPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGLPSSTPVGEIA--TFPLITVDPDDFLF   77 (111)
T ss_pred             CCCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCCCCCCCHHHHh--CCCcEEECCCCcHH
Confidence            35678999999999999999888889999998 99999999999998765432 221 101111  22345667777777


Q ss_pred             HHHHHh
Q psy2372         379 RFKELL  384 (447)
Q Consensus       379 ~~~~~l  384 (447)
                      ++.+.+
T Consensus        78 ~~~~~~   83 (111)
T cd04589          78 NALLLM   83 (111)
T ss_pred             HHHHHH
Confidence            765554

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.44  E-value=0.00021  Score=62.87  Aligned_cols=73  Identities=19%  Similarity=0.313  Sum_probs=58.2

Q ss_pred             hhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         278 TKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       278 ~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      .+.+++++.+... ...+.+.+| +|+++++++.++.+++.+|++++...+||+++ |+++|-||-.||...+...
T Consensus        50 ~k~Il~aL~e~e~-~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~  123 (187)
T COG3620          50 VKRILEALEEAEK-TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEG  123 (187)
T ss_pred             HHHHHHHHHHhhc-ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcc
Confidence            3445555443221 125678888 56789999999999999999999999999987 9999999999999988653

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.43  E-value=0.00024  Score=59.33  Aligned_cols=57  Identities=18%  Similarity=0.327  Sum_probs=50.2

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+.++.++|.+  +..+++.++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt~~di~~  121 (122)
T cd04585          65 SKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQ-GRLVGIITESDLFR  121 (122)
T ss_pred             cccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-CcEEEEEEHHHhhh
Confidence            45678889974  57789999999999999999999999999854 79999999999976

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.43  E-value=0.0009  Score=55.59  Aligned_cols=81  Identities=21%  Similarity=0.334  Sum_probs=58.7

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccc-cc-cccceEEecCCeEEEeccCCHHH
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS-NS-YQEEIEFCEDGSWIISASMTFDR  379 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~-e~-~~~~~~~~~~~~~~v~g~~~i~~  379 (447)
                      +++++++++++.++++.|.+.+.+.++|+|++|+++|+++..|+...+..+-+ .. .-..+  .......+....++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~l~~   79 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEV--ATPPLLTVHPDEPLAH   79 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHh--ccCCceEECCCCCHHH
Confidence            45688999999999999999999999999999999999999999987754321 11 00011  1233456677777777


Q ss_pred             HHHHh
Q psy2372         380 FKELL  384 (447)
Q Consensus       380 ~~~~l  384 (447)
                      ..+.+
T Consensus        80 ~l~~~   84 (115)
T cd04593          80 ALDRM   84 (115)
T ss_pred             HHHHH
Confidence            65554

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.40  E-value=0.0012  Score=69.58  Aligned_cols=186  Identities=9%  Similarity=0.062  Sum_probs=111.6

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCee
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLF  305 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~  305 (447)
                      .+++++|++  +++++++++++.++++.|.+++...+||+|++ ++++|+|+.+|+++.......   ...+.-.+----
T Consensus       146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-g~LvGIIT~~DLl~~~~~~~~---~d~~grl~Vgaa  219 (475)
T TIGR01303       146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-GTLAGILTRTGALRATIYTPA---TDAAGRLRIGAA  219 (475)
T ss_pred             CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHhCCch---hhhccCceehhe
Confidence            569999984  67899999999999999999999999999854 899999999999986543211   000000000001


Q ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEcC-CC--------------------CEEE-EEeHHHHHHHHhccc---c------
Q psy2372         306 IPETISTMQLLETFKKNKSELSLVIDE-YG--------------------ELEG-IITINDIIHSLIGDI---S------  354 (447)
Q Consensus       306 V~~~~~l~~al~~m~~~~~~~a~VvDe-~G--------------------~~iG-iVT~~DIle~i~gei---~------  354 (447)
                      +.......+.++.+.+.+.+.+ ++|- +|                    -+.| +.|.++....+--..   +      
T Consensus       220 v~~~~~~~~ra~~Lv~aGVd~i-~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~G  298 (475)
T TIGR01303       220 VGINGDVGGKAKALLDAGVDVL-VIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPG  298 (475)
T ss_pred             eeeCccHHHHHHHHHHhCCCEE-EEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCC
Confidence            2222334444555555555443 3342 11                    1246 677777665542110   1      


Q ss_pred             ----cc---c--ccc---eE------EecCCeEEEeccCC-HHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCC
Q psy2372         355 ----NS---Y--QEE---IE------FCEDGSWIISASMT-FDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKI  415 (447)
Q Consensus       355 ----e~---~--~~~---~~------~~~~~~~~v~g~~~-i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~  415 (447)
                          -.   .  .+.   +.      +..+-..+.+|.+. -.|+.+.+..-        .++-.+|+++   -|.--.+
T Consensus       299 s~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~G--------A~~vm~g~~~---ag~~esp  367 (475)
T TIGR01303       299 AMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAG--------ASNVMVGSWF---AGTYESP  367 (475)
T ss_pred             ccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcC--------CCEEeechhh---cccccCC
Confidence                00   0  000   00      00122355666554 45566665432        2467888887   4778889


Q ss_pred             CcEEE-EcCEEEEEE
Q psy2372         416 SENFI-WKNIKIEVI  429 (447)
Q Consensus       416 g~~~~-~~~~~f~v~  429 (447)
                      ||.+. ++|-++|.-
T Consensus       368 g~~~~~~~g~~~k~y  382 (475)
T TIGR01303       368 GDLMRDRDGRPYKES  382 (475)
T ss_pred             CceEEeECCEEEEEE
Confidence            99997 999999875

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.40  E-value=0.00034  Score=68.52  Aligned_cols=122  Identities=17%  Similarity=0.231  Sum_probs=92.6

Q ss_pred             HHHHhhhcccCceeeceeeeeCCceEEEcC-CCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCcc
Q psy2372         214 YNLASRALKLDDQCAITLMTPRMKVNFINI-DDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIV  292 (447)
Q Consensus       214 ~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~-~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~  292 (447)
                      ++.++++-...-.+++++|.+ .+....+. ...-..+.+.+...+.+.+-+++ ..++.+|+++..++...        
T Consensus       262 ~~Fv~~v~~~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~-~~~~~~g~v~~~~~~~~--------  331 (386)
T COG4175         262 RDFVRNVDRSRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVD-RGNKFVGVVSIDSLVKA--------  331 (386)
T ss_pred             HHHHhcCChhheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHh-ccCceeeEEeccchhcc--------
Confidence            466777777777889999985 33222222 23335677888887777777776 44679999999877653        


Q ss_pred             CCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         293 NIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       293 ~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                           ....++..++.++++.+.+...++...+++ |+||.|+++|+++...+++++.+
T Consensus       332 -----~~~~~~~~v~~d~~~~~~~~~~~~~~~p~a-Vvde~~r~vG~i~~~~vl~aL~~  384 (386)
T COG4175         332 -----ALIDDVLTVDADTPLSEILARIRQAPCPVA-VVDEDGRYVGIISRGELLEALAR  384 (386)
T ss_pred             -----cccccccccCccchHHHHHHHHhcCCCcee-EEcCCCcEEEEecHHHHHHHHhc
Confidence                 223467789999999999999998887776 88999999999999999999865

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.38  E-value=0.00029  Score=59.28  Aligned_cols=57  Identities=18%  Similarity=0.309  Sum_probs=50.1

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      ...+++++|.+  ++.++++++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDED-RRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-CCEEEEEEhHHhhc
Confidence            45578899974  67789999999999999999999999999854 89999999999975

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.37  E-value=0.00037  Score=57.98  Aligned_cols=57  Identities=16%  Similarity=0.193  Sum_probs=47.0

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      ..++++|.+....+..++++++.++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        57 ~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDD-GELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-CeEEEEEEHHHhhc
Confidence            4588999765444444559999999999999999999999854 79999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.37  E-value=0.00047  Score=56.83  Aligned_cols=55  Identities=22%  Similarity=0.463  Sum_probs=48.3

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.++.++|.  +++.++++++++.++++.|.+++..++||+++  ++++|+++..|++.
T Consensus        56 ~~~v~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~  110 (111)
T cd04626          56 EKKVFNIVS--QDVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD  110 (111)
T ss_pred             cCcHHHHhc--CCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence            346888886  46778999999999999999999999999984  79999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.37  E-value=0.00042  Score=57.22  Aligned_cols=55  Identities=16%  Similarity=0.291  Sum_probs=48.2

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .++.++|.+  ++.+++.++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-GRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-CcEEEEEEHHHhhc
Confidence            358889974  56689999999999999999999999999854 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.35  E-value=0.00081  Score=67.24  Aligned_cols=89  Identities=19%  Similarity=0.174  Sum_probs=64.0

Q ss_pred             CChhhhcC-C--CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccccccceEEecCCeE
Q psy2372         294 IDITSAIQ-P--PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im~-~--~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~~~~~~~~~~~~~  369 (447)
                      .+++++|+ +  ++++++++++.++.+.|.+++...+||+|++|+++|+||..|+...+..+. .+..-.++.  ..+..
T Consensus       197 ~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im--~~~~~  274 (321)
T PRK11543        197 NKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAM--TRGGT  274 (321)
T ss_pred             hHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhc--CCCCE
Confidence            56889995 4  789999999999999999888899999999999999999999987664322 111001111  12334


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .+....++.+..+.+
T Consensus       275 ~v~~~~~l~~a~~~m  289 (321)
T PRK11543        275 TLQAQSRAIDAKEIL  289 (321)
T ss_pred             EECCCCCHHHHHHHH
Confidence            566667777665444

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.0012  Score=54.59  Aligned_cols=81  Identities=17%  Similarity=0.207  Sum_probs=59.3

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc-cc-ccccccceEEecCCeEEEeccCCHHH
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG-DI-SNSYQEEIEFCEDGSWIISASMTFDR  379 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g-ei-~e~~~~~~~~~~~~~~~v~g~~~i~~  379 (447)
                      ++.++++++++.++++.|.+.+...++|+|+.|+++|++|..|+...... +. .+..-..+.  ......++.+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~--~~~~~~v~~~~~l~~   79 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVM--NSPVITIDANDSIAK   79 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhc--cCCceEECCCCcHHH
Confidence            46789999999999999999999999999988999999999999876432 11 111001111  134456777788887


Q ss_pred             HHHHh
Q psy2372         380 FKELL  384 (447)
Q Consensus       380 ~~~~l  384 (447)
                      +.+.+
T Consensus        80 ~~~~~   84 (113)
T cd04615          80 ARWLM   84 (113)
T ss_pred             HHHHH
Confidence            76665

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.0016  Score=53.62  Aligned_cols=51  Identities=18%  Similarity=0.251  Sum_probs=45.8

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      ++.+++++.++.++++.|.+.+.+.+||+|++|+++|++|..|++..+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~   52 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAG   52 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhcc
Confidence            567899999999999999988888999999889999999999999876543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.34  E-value=0.00035  Score=57.65  Aligned_cols=55  Identities=22%  Similarity=0.361  Sum_probs=48.4

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .++.++|.+  ...++++++++.++++.|.+++..++||++++ ++++|+++.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-GQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-CCEEEEEEHHHhcc
Confidence            568889964  55689999999999999999999999999865 79999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.34  E-value=0.00096  Score=56.62  Aligned_cols=50  Identities=24%  Similarity=0.292  Sum_probs=45.1

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++++.|.+++...+||+|+.|+++|++|..|+.....+
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~   51 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLS   51 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcC
Confidence            46789999999999999999999999999999999999999999987643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.32  E-value=0.0005  Score=58.06  Aligned_cols=51  Identities=20%  Similarity=0.233  Sum_probs=44.8

Q ss_pred             ceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHH
Q psy2372         229 ITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF  282 (447)
Q Consensus       229 ~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl  282 (447)
                      .++|.  .++.++++++++.++++.|.+++.+++||+|++ ++++|+|+.+|+.
T Consensus        71 ~~~~~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~di~  121 (123)
T cd04627          71 LTIGT--SDVISINGDQPLIDALHLMHNEGISSVAVVDNQ-GNLIGNISVTDVR  121 (123)
T ss_pred             cccCc--CCceEeCCCCCHHHHHHHHHHcCCceEEEECCC-CcEEEEEeHHHhh
Confidence            44665  467799999999999999999999999999865 7899999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.30  E-value=0.0004  Score=57.11  Aligned_cols=56  Identities=16%  Similarity=0.276  Sum_probs=49.3

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +..+.++|.+  +..++++++++.++.+.|.+++...+||++++ ++++|+++.+|+++
T Consensus        52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-KKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-CCEEEEEEHHHhhc
Confidence            4568889974  56789999999999999999999999999854 79999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.30  E-value=0.00076  Score=55.00  Aligned_cols=77  Identities=13%  Similarity=0.088  Sum_probs=55.1

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHHHH
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRF  380 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~~  380 (447)
                      +++++++++.++.++++.|++++.+.++|+|++|+++|++|..|+....-..+.+     +.  ......++-..++.+.
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~   73 (106)
T cd04582           1 TEPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASGGCCGD-----HA--EPFKVTVSVDDDLRIV   73 (106)
T ss_pred             CCCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcccchhh-----hc--ccCCEEECCCCCHHHH
Confidence            3567899999999999999988888999999889999999999998743111111     11  1122346666777766


Q ss_pred             HHHh
Q psy2372         381 KELL  384 (447)
Q Consensus       381 ~~~l  384 (447)
                      .+.+
T Consensus        74 ~~~~   77 (106)
T cd04582          74 LSRM   77 (106)
T ss_pred             HHHH
Confidence            5443

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.30  E-value=0.00044  Score=56.49  Aligned_cols=56  Identities=11%  Similarity=0.277  Sum_probs=48.6

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +..++++|.+  ...++++++++.++++.|.+++.+++||++++ |+++|+++.+|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-NNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-CeEEEEEEHHHhhc
Confidence            3468889964  45689999999999999999999999999855 79999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.29  E-value=0.00075  Score=55.53  Aligned_cols=56  Identities=13%  Similarity=0.254  Sum_probs=49.2

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+.++.++|.+  ...+++.++++.++++.|.+++.+.+||.+ + ++++|+++.+|+++
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-~~~~Gvvt~~di~~  109 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-GRLVGIVTRTDLLR  109 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-CEEEEEEEhHHhhc
Confidence            45678889974  567899999999999999999999999998 4 79999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.29  E-value=0.00082  Score=55.70  Aligned_cols=50  Identities=24%  Similarity=0.364  Sum_probs=45.5

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++++.|++++.+.+||+|+.|+++|+|+..|++..+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~   51 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKG   51 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhc
Confidence            46789999999999999999999999999988999999999999987653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.29  E-value=0.00069  Score=55.87  Aligned_cols=56  Identities=11%  Similarity=0.216  Sum_probs=48.5

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+.++.++|.+  ++.++++++++.++++.+.+++...+||+++  ++++|+++.+|+++
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDD--DELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC--CEEEEEEEhhhhhc
Confidence            34578889964  5778999999999999999999999999985  38999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.29  E-value=0.00075  Score=73.09  Aligned_cols=89  Identities=17%  Similarity=0.299  Sum_probs=66.6

Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEE
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWI  370 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~  370 (447)
                      .+++|+|+ ++.++++++++.++++.|++++.+..||+|++|+++|+||.+|+.+.+..+- +++ .-.++.  ..+...
T Consensus       447 ~~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim--~~~~~~  524 (574)
T PRK01862        447 TQMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYA--HTPFPL  524 (574)
T ss_pred             CcHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhc--cCCCee
Confidence            67899995 5678999999999999999999999999999999999999999988664332 111 111111  223356


Q ss_pred             EeccCCHHHHHHHh
Q psy2372         371 ISASMTFDRFKELL  384 (447)
Q Consensus       371 v~g~~~i~~~~~~l  384 (447)
                      ++.+.+++|..+.+
T Consensus       525 v~~d~~L~~al~~m  538 (574)
T PRK01862        525 LTPDMPLGDALEHF  538 (574)
T ss_pred             ECCCCCHHHHHHHH
Confidence            78888888876554

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=97.28  E-value=0.00057  Score=73.53  Aligned_cols=59  Identities=17%  Similarity=0.312  Sum_probs=53.8

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      .+++++| +++.++++++++.++++.|++++.+.+||+|+.|+++|+||..|+.+.+.+.
T Consensus        68 ~~V~dim~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~  127 (546)
T PRK14869         68 PQVRDLEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDI  127 (546)
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhh
Confidence            5789998 5678999999999999999999999999999989999999999999987653

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.26  E-value=0.00084  Score=45.69  Aligned_cols=47  Identities=17%  Similarity=0.401  Sum_probs=41.4

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372         238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI  285 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~  285 (447)
                      +.++++++++.++.+.|.+++++.+||++++ ++++|+++.+++++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-GRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCC-CeEEEEEEHHHHHHhh
Confidence            3568899999999999999999999999865 7999999999997653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.26  E-value=0.0011  Score=54.25  Aligned_cols=49  Identities=20%  Similarity=0.317  Sum_probs=44.3

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++++.|.+++.+.+||+|+ |+++|++|..|+...+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~   50 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIE   50 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhc
Confidence            4578899999999999999999999999998 999999999999987653

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.25  E-value=0.0012  Score=69.23  Aligned_cols=58  Identities=16%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      .+++++| +++.++++++++.++++.|++++.+.+||+|++|+++|+||.+|++..+..
T Consensus       335 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~  393 (454)
T TIGR01137       335 ATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFA  393 (454)
T ss_pred             CCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhc
Confidence            6789999 567899999999999999999898999999988999999999999987654

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.24  E-value=0.00032  Score=57.55  Aligned_cols=56  Identities=21%  Similarity=0.347  Sum_probs=46.6

Q ss_pred             ceeeceeeeeCCceEEEcC-CCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINI-DDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~-~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.++.++|.+.  ...+.. ++++.++++.|.+++++.+||++++ ++++|+++.+|+++
T Consensus        53 ~~~v~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTPE--NLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-GKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhcccC--ceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-CCEEEEEEhhhhhc
Confidence            45788899643  334555 9999999999999999999999854 79999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.24  E-value=0.00093  Score=54.83  Aligned_cols=57  Identities=11%  Similarity=0.142  Sum_probs=49.3

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+.++.++|.+  ++.++++++++.++++.|.+++...+||++++ ++++|+++.+|+++
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~~~di~~  110 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-GELLGLLSQTDLLQ  110 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-CcEEEEEEhHHhhc
Confidence            34668888864  57789999999999999999999999999854 79999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.23  E-value=0.0018  Score=52.51  Aligned_cols=81  Identities=16%  Similarity=0.205  Sum_probs=57.9

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cccc-ccceEEecCCeEEEeccCCHHH
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSY-QEEIEFCEDGSWIISASMTFDR  379 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~-~~~~~~~~~~~~~v~g~~~i~~  379 (447)
                      ++.+++++.++.++.+.|.+++.+.+||+|+.|++.|+++..|++....+.. .+.. -..+  .....+.+....++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   79 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDPLVTVGDV--MTRDVVTVSPDTSLEE   79 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCccccHHHH--hcCCceecCCCcCHHH
Confidence            4678899999999999999988899999999899999999999998876543 1110 0001  1123344556666666


Q ss_pred             HHHHh
Q psy2372         380 FKELL  384 (447)
Q Consensus       380 ~~~~l  384 (447)
                      ..+.+
T Consensus        80 ~~~~~   84 (113)
T cd02205          80 AAELM   84 (113)
T ss_pred             HHHHH
Confidence            55544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.23  E-value=0.0011  Score=56.34  Aligned_cols=49  Identities=22%  Similarity=0.369  Sum_probs=44.6

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      ++..+++++++.++++.|.+.+.+.++|+|+.|++.|++|..|+.+.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~   50 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVV   50 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHh
Confidence            4678899999999999999999999999999899999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.23  E-value=0.0014  Score=54.92  Aligned_cols=50  Identities=22%  Similarity=0.375  Sum_probs=45.6

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++++.|.+.+.+.+||+|++|+++|++|..|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~   51 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALS   51 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhcc
Confidence            56789999999999999999999999999988999999999999987654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.22  E-value=0.00091  Score=54.88  Aligned_cols=54  Identities=17%  Similarity=0.329  Sum_probs=47.3

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+.++|.+  ++.+++.++++.++++.|.+++.+.+||++++ ++++|+++.+|+++
T Consensus        57 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-~~~~G~it~~di~~  110 (111)
T cd04612          57 LVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDS-GRLVGIVSRSDLLR  110 (111)
T ss_pred             CHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-CCEEEEEEHHHhhh
Confidence            56777863  56789999999999999999999999999854 79999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.21  E-value=0.00064  Score=56.07  Aligned_cols=55  Identities=20%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.++.++|.+  ++.+++.++++.++++.|.+++..++||++ + ++++|+++.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~-~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-G-GTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-C-CEEEEEEEHHHhhc
Confidence            4568899963  566899999999999999999999999998 3 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.21  E-value=0.0011  Score=70.23  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=55.2

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI  285 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~  285 (447)
                      .+.+++++|+|+.++++++++.++.|+.++|.+++...+||+|++ ++++|+|+.+|+++..
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-g~liGIIT~~DIl~~~  217 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-GELVALVSRSDLKKNR  217 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEehHhhhcc
Confidence            356799999987788999999999999999999999999999865 8999999999999764

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.21  E-value=0.00065  Score=55.94  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=49.9

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK  284 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~  284 (447)
                      +.+++++|.+  +...+++++++.++++.|.+++...+||++++ ++++|+++..|+++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEE-GRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-CcEEEEEEhHHhhhh
Confidence            4568888864  56789999999999999999999999999865 799999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.20  E-value=0.0013  Score=54.01  Aligned_cols=80  Identities=24%  Similarity=0.248  Sum_probs=56.9

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHHHH
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRF  380 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~~  380 (447)
                      +++.++++++++.++++.|.+++.+.++|+|+.|+++|++|..|++..+..... . -..+.  ......++-..+++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~-~-~~~~~--~~~~~~v~~~~~l~~~   77 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDKK-S-VEDIM--TRNVITATPDEPIDVA   77 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCcc-C-HHHhc--CCCCeEECCCCcHHHH
Confidence            467789999999999999999888899999988999999999999875532110 0 00010  1233456666677776


Q ss_pred             HHHh
Q psy2372         381 KELL  384 (447)
Q Consensus       381 ~~~l  384 (447)
                      .+.+
T Consensus        78 ~~~~   81 (110)
T cd04605          78 ARKM   81 (110)
T ss_pred             HHHH
Confidence            5444

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.18  E-value=0.00052  Score=57.45  Aligned_cols=57  Identities=18%  Similarity=0.317  Sum_probs=49.8

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.+.++.++|.+  +..+++.++++.++++.|.+.+.+.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~~~dl~~  120 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD--GKLVGIVTRTDILR  120 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC--CEEEEEEEHHHhhc
Confidence            345678888964  5778999999999999999999999999984  79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.18  E-value=0.0012  Score=54.65  Aligned_cols=54  Identities=19%  Similarity=0.311  Sum_probs=47.2

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHh-CCCcEEEEEeCCCCeEEEEEEhhhHH
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILD-SSYNYFPVYKKSISKIIGTLNTKTLF  282 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~-~~~s~iPV~~~~~~~ivGiv~~~DLl  282 (447)
                      .++++|++  ++.++.++.++.++.+.|.+ ++.+++||++++.++++|+++.+|++
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            58999984  67799999999999999999 79999999996412999999999874

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.16  E-value=0.00063  Score=57.28  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=49.6

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+.++.++|.+  .+.+++.++++.++++.|.+++.+.+||++++ ++++|+|+.+|+++
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-~~~~Gvit~~di~~  124 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-GKLVGIVTERDLLK  124 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-CcEEEEEEHHHhhc
Confidence            34568888863  57799999999999999999999999999854 78999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.16  E-value=0.00085  Score=58.14  Aligned_cols=56  Identities=16%  Similarity=0.318  Sum_probs=49.3

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .+.+++++|.+  ++.++++++++.++++.|.++++..+||+++  ++++|+++.+|+++
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~--~~~~Gvit~~di~~  134 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN--DNIVGVITKTDICR  134 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC--CEEEEEEEHHHHhh
Confidence            35579999974  5568999999999999999999999999984  79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.15  E-value=0.0017  Score=63.00  Aligned_cols=89  Identities=21%  Similarity=0.234  Sum_probs=63.1

Q ss_pred             CChhhhcC-C-CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccc-cccccceEEecCCeEE
Q psy2372         294 IDITSAIQ-P-PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS-NSYQEEIEFCEDGSWI  370 (447)
Q Consensus       294 ~~v~~im~-~-~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~-e~~~~~~~~~~~~~~~  370 (447)
                      .+++++|+ + +.++++++++.++++.|.+.+.+.++|+|++|+++|+||..|+...+.++.+ +..-..+.  ....-.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im--~~~~~~  232 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFM--TLGPKT  232 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhC--CCCCeE
Confidence            56888884 5 6899999999999999999889999999988999999999999986643221 11000111  122234


Q ss_pred             EeccCCHHHHHHHh
Q psy2372         371 ISASMTFDRFKELL  384 (447)
Q Consensus       371 v~g~~~i~~~~~~l  384 (447)
                      ++...+++|..+.+
T Consensus       233 v~~~~~l~~a~~~m  246 (268)
T TIGR00393       233 FKLDALLLEALEFL  246 (268)
T ss_pred             ECCCCcHHHHHHHH
Confidence            66666766654443

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.13  E-value=0.00085  Score=57.42  Aligned_cols=55  Identities=20%  Similarity=0.318  Sum_probs=48.5

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      ..++.++|.+  ++..++.++++.++++.|.+++.+++||+++  ++++|+++.+|+++
T Consensus        77 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~  131 (132)
T cd04636          77 GKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIR  131 (132)
T ss_pred             CCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhc
Confidence            3468889964  5678999999999999999999999999985  89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.13  E-value=0.00096  Score=54.52  Aligned_cols=55  Identities=20%  Similarity=0.344  Sum_probs=48.1

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      ..+.++|.+  ++.++++++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-GKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCC-CeEEEEEehHHhhc
Confidence            457888874  56789999999999999999999999999855 79999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.12  E-value=0.00074  Score=55.59  Aligned_cols=55  Identities=11%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      ..+.++|.  .++.+++.++++.++.+.|.+++..++||++++ ++++|+++.+|+..
T Consensus        56 ~~v~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-~~~~G~it~~dl~~  110 (111)
T cd04639          56 APVRGVMR--RDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-GRLVGLVTLENVGE  110 (111)
T ss_pred             CcHHHHhc--CCCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-CCEEEEEEHHHhhc
Confidence            46888886  467789999999999999999999999999854 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.08  E-value=0.0013  Score=53.84  Aligned_cols=54  Identities=9%  Similarity=0.303  Sum_probs=47.2

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .++.++|.+  +..++++++++.++++.|.+++.+++||++ + ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~-~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-D-GKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-C-CEEEEEEEHHHhhc
Confidence            357788874  456899999999999999999999999997 4 89999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.07  E-value=0.00095  Score=55.76  Aligned_cols=57  Identities=18%  Similarity=0.321  Sum_probs=49.8

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      ....++.++|.+  .+.+++.+++++++++.|.+++++.+||+++  ++++|+++.+|+++
T Consensus        64 ~~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~~Gvv~~~di~~  120 (121)
T cd04584          64 LLKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED--GRLVGIITETDLLR  120 (121)
T ss_pred             hcCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC--CEEEEEEEHHHhhc
Confidence            345678888974  5678999999999999999999999999984  79999999999975

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.06  E-value=0.0011  Score=54.61  Aligned_cols=55  Identities=20%  Similarity=0.364  Sum_probs=48.5

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.++.++|.  .++.++++++++.++++.|.+++.+++||+++  ++++|+++.+|+++
T Consensus        56 ~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMT--APPITIPPDATVFEALLLMLERGIHHLPVVDD--GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhC--CCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEHHHhhc
Confidence            356888886  36778999999999999999999999999984  79999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.06  E-value=0.0012  Score=53.69  Aligned_cols=55  Identities=16%  Similarity=0.258  Sum_probs=48.2

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +..+.++|.+  +..+++.++++.++++.|.+++.+.+||+++  ++++|+++.+|++.
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~~l~~  104 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE--RKLVGIITKGTIAL  104 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC--CEEEEEEEHHHhcc
Confidence            3468888964  5678999999999999999999999999984  89999999999873

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.05  E-value=0.00098  Score=55.85  Aligned_cols=57  Identities=18%  Similarity=0.366  Sum_probs=49.3

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      ...++.++|.  .++.+++.++++.++.+.|.+++.+.+||++++ ++++|+++..|+++
T Consensus        65 ~~~~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit~~dl~~  121 (122)
T cd04635          65 ASPTVEKIMS--TPVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-DQLVGIVDRHDVLK  121 (122)
T ss_pred             ccCcHHHHhc--CCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-CcEEEEEEhHHhhc
Confidence            3456788886  356789999999999999999999999999865 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.05  E-value=0.0021  Score=53.50  Aligned_cols=49  Identities=20%  Similarity=0.384  Sum_probs=43.2

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcC-CceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         301 QPPLFIPETISTMQLLETFKKNK-SELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~-~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      |+++++++++++.++++.|+..+ .+.++|+|+ |++.|+|+..|++..+.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~   50 (119)
T cd04598           1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLS   50 (119)
T ss_pred             CCcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHh
Confidence            45678999999999999998876 788999999 99999999999987554

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.01  E-value=0.0018  Score=55.56  Aligned_cols=50  Identities=18%  Similarity=0.194  Sum_probs=45.3

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++++.|.+++.+.+||+|+.|+++|+|+..|+++....
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~   52 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAEL   52 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcc
Confidence            56789999999999999999999999999998999999999999986644

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.98  E-value=0.0052  Score=50.33  Aligned_cols=81  Identities=17%  Similarity=0.299  Sum_probs=55.8

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEeccCCHHHH
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFDRF  380 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~~  380 (447)
                      +++..+++++++.++++.|.+++.+.+||+|+ |++.|+++.+|++...-...+...-..+.  .+....++...++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~~~~v~~~~--~~~~~~v~~~~~~~~~   77 (110)
T cd04588           1 KPLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLELAKVKDVM--TKDVITIDEDEQLYDA   77 (110)
T ss_pred             CCcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccccccCHHHHh--cCCceEECCCCCHHHH
Confidence            35678999999999999999989889999998 99999999999997643221100000011  1233456666666666


Q ss_pred             HHHh
Q psy2372         381 KELL  384 (447)
Q Consensus       381 ~~~l  384 (447)
                      .+.+
T Consensus        78 ~~~~   81 (110)
T cd04588          78 IRLM   81 (110)
T ss_pred             HHHH
Confidence            5554

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.97  E-value=0.0011  Score=55.51  Aligned_cols=54  Identities=24%  Similarity=0.365  Sum_probs=47.9

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      .++++|.  .++.+++.++++.++++.|.+++.+++||++++ ++++|+++.+|+++
T Consensus        68 ~~~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-~~~~Gvit~~dll~  121 (122)
T cd04637          68 RAHQIMT--RDPITVSPDTPVDEASKLLLENSISCLPVVDEN-GQLIGIITWKDLLK  121 (122)
T ss_pred             HHHHhhc--CCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-CCEEEEEEHHHhhh
Confidence            5778886  467789999999999999999999999999854 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=96.92  E-value=0.0031  Score=51.79  Aligned_cols=50  Identities=14%  Similarity=0.225  Sum_probs=45.0

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++.+.|.+++...++|+|+. |+++|++|..|++.....
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~   52 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAE   52 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHc
Confidence            46789999999999999999888899999987 999999999999987754

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PRK11573 hypothetical protein; Provisional

Probab=96.89  E-value=0.2  Score=52.14  Aligned_cols=105  Identities=15%  Similarity=0.239  Sum_probs=69.0

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCC--hhhhc---CCCeeeCCCCC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNID--ITSAI---QPPLFIPETIS  311 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~--v~~im---~~~~~V~~~~~  311 (447)
                      ++.+++++.++.++++.|++++..-..|+|+- |...|+|+..|++..+..+-.++..+  -.++.   ...+.++..++
T Consensus       263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEy-G~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~~~v~G~~~  341 (413)
T PRK11573        263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEY-GDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSVIIDGTAN  341 (413)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecC-CCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCEEEEEeeeE
Confidence            46789999999999999999988888888864 88999999999999876432211000  01111   12356777777


Q ss_pred             HHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         312 TMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       312 l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      +.++-+.+.-   +. |- ++      .=|....+-+.+|.+
T Consensus       342 l~d~~~~l~~---~l-~~-~~------~~Tl~G~i~~~lg~i  372 (413)
T PRK11573        342 VREINKAFNW---HL-PE-DD------ARTVNGVILEALEEI  372 (413)
T ss_pred             HHHHHHHhCC---CC-CC-CC------CeeHHHHHHHHhCcC
Confidence            7777766632   21 10 11      235555555666666

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=96.85  E-value=0.0037  Score=51.43  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             eeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       231 vM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +|.+  ++.+++.++++.++.+.|.+++..++||++ + ++++|+++.+|+++
T Consensus        56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~-~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-E-GRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-C-CeEEEEEEhhhhhc
Confidence            6763  567899999999999999999999999996 3 79999999999975

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=96.66  E-value=0.0049  Score=60.95  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=50.7

Q ss_pred             CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHH
Q psy2372         294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSL  349 (447)
Q Consensus       294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i  349 (447)
                      .+++++|+|   +.++++++++.++++.+.+++.+..||+|++ ++++|+|+..|++...
T Consensus        67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~  126 (292)
T PRK15094         67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM  126 (292)
T ss_pred             CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHh
Confidence            679999976   6899999999999999999999999999876 7899999999998644

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.59  E-value=0.0051  Score=53.63  Aligned_cols=49  Identities=24%  Similarity=0.367  Sum_probs=44.3

Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++++.|++.+.+.+||+|+ |+++|++|..|++..+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~   50 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVT   50 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHh
Confidence            5678999999999999999999999999998 999999999999887653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.57  E-value=0.0041  Score=65.03  Aligned_cols=74  Identities=20%  Similarity=0.306  Sum_probs=62.0

Q ss_pred             CccchHHHHHHhhhcc---cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         207 GIFNKIEYNLASRALK---LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       207 g~l~~~E~~~i~~~l~---l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      |+++  ++++...++.   -...+|+++||  .++++++.++-+=||.-.|.++++.++||+++  |+++|+++..|+++
T Consensus       194 GIvT--~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~feAml~m~r~~I~hl~V~e~--gq~~Gilt~~dIl~  267 (610)
T COG2905         194 GIVT--RKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFLFEAMLMMLRNRIKHLPVTED--GQPLGILTLTDILR  267 (610)
T ss_pred             ceee--hHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchHHHHHHHHHHhCCceeeeecC--CeeeEEeeHHHHHH
Confidence            5555  4555555554   34667999999  68899999999999999999999999999973  89999999999998


Q ss_pred             HhH
Q psy2372         284 KII  286 (447)
Q Consensus       284 ~~~  286 (447)
                      ...
T Consensus       268 l~s  270 (610)
T COG2905         268 LFS  270 (610)
T ss_pred             hhC
Confidence            764

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.52  E-value=0.0041  Score=65.28  Aligned_cols=60  Identities=18%  Similarity=0.270  Sum_probs=53.4

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII  286 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~  286 (447)
                      +.+++++|++ .++.++++++++.++++.|.+++...+||+|++ ++++|+|+.+|+++...
T Consensus       142 ~~~V~dvm~~-~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~-G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       142 GKPVSEVMTR-EEVITVPEGIDLEEALKVLHEHRIEKLPVVDKN-GELVGLITMKDIVKRRK  201 (450)
T ss_pred             CCCHHHhhCC-CCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCC-CcEEEEEEhHHhhhccc
Confidence            5679999974 467899999999999999999999999999865 89999999999998753

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=96.51  E-value=0.63  Score=48.64  Aligned_cols=59  Identities=17%  Similarity=0.320  Sum_probs=51.9

Q ss_pred             CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEc-CCCCEEEEEeHHHHHHHHhcc
Q psy2372         294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVID-EYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvD-e~G~~iGiVT~~DIle~i~ge  352 (447)
                      .+++++|.|   ...++.+.+..++.+.+++++....||.| +-+.++|++...|++.....+
T Consensus       206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~  268 (429)
T COG1253         206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG  268 (429)
T ss_pred             cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC
Confidence            678899954   56889999999999999999999999999 457899999999999988754

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.37  E-value=0.0069  Score=49.35  Aligned_cols=54  Identities=17%  Similarity=0.340  Sum_probs=46.0

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      ..+.++|.+  +..+++.++++.++++.|.+++...+||+++  ++++|+++.+|+++
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD--GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence            346677763  5668899999999999999999999999983  69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=96.20  E-value=0.009  Score=60.87  Aligned_cols=75  Identities=16%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             CCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEEec
Q psy2372         366 DGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTIL  444 (447)
Q Consensus       366 ~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~  444 (447)
                      -|.+..+++....|++-.++.+  .-  +-+...|+|+++.+++|..|.-||+|+|+|....|.+.+++||.++.++--
T Consensus       494 fg~f~~e~~~~~~~~~~~yg~~--~~--~~d~~~~~~~~i~~~lg~~~v~~Drv~~~~l~~~v~~~~d~~it~ig~~~~  568 (574)
T COG3263         494 FGDFILEPSAKAADVALAYGLG--DG--YADKAQTLGELVTQLLGGAPVLGDRVEFGGLIWTVAEKEDNRVTKIGVRVE  568 (574)
T ss_pred             hcchhhCcchhhhHHHHHhCCC--CC--hhhhhhcHHHHHHHHhCCCceeeeeEEEccEEEEEeecccCeeeeeeeecc
Confidence            3668889999999999999887  32  123568999999999999999999999999999999999999999988643

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=96.16  E-value=1.3  Score=44.77  Aligned_cols=60  Identities=10%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII  286 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~  286 (447)
                      .+-.+++.-..++.++|+++++.+-+..+.+++..--.|+|+ -|.+.|+|+..|++..+-
T Consensus       265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIV  324 (423)
T COG4536         265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIV  324 (423)
T ss_pred             ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHh
Confidence            445556655568889999999999999998887766677775 599999999999998664

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=96.14  E-value=0.0063  Score=63.41  Aligned_cols=63  Identities=19%  Similarity=0.210  Sum_probs=55.9

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN  288 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~  288 (447)
                      -.+..++++|.+  ++++++++++-+|+.+.+++++....||+|++ ++++|+++..|++..+.+.
T Consensus       193 ~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         193 EPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED-NRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             CcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC-CceeeeeeHHHHHHHHHHH
Confidence            456779999986  47899999999999999999999999999965 8999999999999887643

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=95.72  E-value=0.022  Score=56.45  Aligned_cols=62  Identities=10%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      ..+.++..+|+.  +..++.+.+|++.+.+.|.-.++.-+||++++ .+++|+++.+|+++.++.
T Consensus       246 ~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-~~llGiitR~dvlk~lq~  307 (432)
T COG4109         246 KPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-NTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             CCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCC-ceEEEEEEHHHHHHHHHH
Confidence            456778899994  56799999999999999999999999999966 899999999999998753

>PRK05326 potassium/proton antiporter; Reviewed

Probab=94.88  E-value=0.13  Score=55.59  Aligned_cols=66  Identities=14%  Similarity=0.295  Sum_probs=59.6

Q ss_pred             CCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEE
Q psy2372         366 DGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT  442 (447)
Q Consensus       366 ~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~  442 (447)
                      -|.|.++|+.+..|+...++.+  ++      ..|++.++..++|+-|..||++.+++..+.|.+   .||.++-++
T Consensus       496 ~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  561 (562)
T PRK05326        496 FGDFILEGDAKLADLALIYGLE--LD------QQTLGELIKQRLGGAPVVGDQVELGGIILTVAE---GRVTKVGLR  561 (562)
T ss_pred             ccccccCcccchhHHHHHhccC--cc------cccHHHHHHHhcCCCCCCCCEeeecceEEEEec---Cceeeeeec
Confidence            5779999999999999999988  64      489999999999999999999999999999998   788887653

>KOG2550|consensus

Probab=94.67  E-value=0.036  Score=56.03  Aligned_cols=71  Identities=13%  Similarity=0.127  Sum_probs=60.6

Q ss_pred             CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH
Q psy2372         207 GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK  284 (447)
Q Consensus       207 g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~  284 (447)
                      |.++..+-+.++    =....+.++|+++.  ++.+.+.+++++-+.+.++...++||++++ |+++-++...||.+.
T Consensus       156 G~vtsrdi~f~~----~~~~~~~~vmt~~~--~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  156 GIITSRDIQFLE----DNSLLVSDVMTKNP--VTGAQGITLKEANEILKKIKKGKLPVVDDK-GELVAMLSRTDLMKN  226 (503)
T ss_pred             EEEehhhhhhhh----cccchhhhhccccc--ccccccccHHHHHHHHHhhhcCCcceeccC-Cceeeeeehhhhhhh
Confidence            667777776662    35567899999866  789999999999999999999999999965 999999999999874

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=94.64  E-value=0.067  Score=54.57  Aligned_cols=58  Identities=12%  Similarity=0.307  Sum_probs=50.4

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      ..+.+.|.  ..+.++++++++.+++..+.++++. +||+|++ ++++|+|+..++++.+..
T Consensus       302 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       302 QGLQDVLI--DDIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-QRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             Cchhhhhc--cCCceECCCCcHHHHHHHHHhCCCC-EEEECCC-CcEEEEEEHHHHHHHHHh
Confidence            35777776  3566899999999999999999999 9999865 899999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.87  E-value=0.38  Score=46.38  Aligned_cols=98  Identities=15%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             CCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh--------CC-----CccCCChhhhcCCCe-----e
Q psy2372         244 DDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS--------NR-----SIVNIDITSAIQPPL-----F  305 (447)
Q Consensus       244 ~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~--------~~-----~~~~~~v~~im~~~~-----~  305 (447)
                      +-.++||+++-     +++.|.+  .|+++-+=+..+++....+        ..     .....++.+.+.+..     -
T Consensus       193 THDidEA~kLa-----dri~vm~--~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~  265 (309)
T COG1125         193 THDIDEALKLA-----DRIAVMD--AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEP  265 (309)
T ss_pred             ecCHHHHHhhh-----ceEEEec--CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCc
Confidence            34467888764     5788887  3789999887777754321        11     111133445553321     3


Q ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      ++......+++..+...+...+||+|+.|+++|.||.+|++..
T Consensus       266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         266 LLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             cccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            4455566678888888899999999999999999999999864

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=92.55  E-value=0.25  Score=51.08  Aligned_cols=59  Identities=10%  Similarity=0.173  Sum_probs=49.5

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN  288 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~  288 (447)
                      ..+.+.|.+  +..+++.++++.+++..+.++.+. +||+|++ ++++|+|+..++++.+...
T Consensus       337 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        337 QGLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDED-QQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             Cchhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-CcEEEEEEHHHHHHHHHhc
Confidence            457777753  456899999999999999998777 9999854 9999999999999988653

>KOG0476|consensus

Probab=90.47  E-value=1.5  Score=47.89  Aligned_cols=61  Identities=13%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC-CCeEEEEEEhhhHHHHh
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS-ISKIIGTLNTKTLFKKI  285 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~-~~~ivGiv~~~DLl~~~  285 (447)
                      ...+.|+++|.  +++.++..+.|..|..+.+..+....+|++|+. ..-++|.|..+.|...+
T Consensus       585 ~h~v~VE~iMV--~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  585 VHTVKVEHIMV--TDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             eeEEEeeeecc--ccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            34577999998  689999999999999999988879999999853 34568999999887544

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=84.20  E-value=60  Score=35.05  Aligned_cols=94  Identities=10%  Similarity=0.082  Sum_probs=51.1

Q ss_pred             CCHH-HHHHHHHhchhcCccchHHHHHHhhh-----cccCceeeceeeeeCCceEEEcCCCCH--HHHHHHHHhCCCcEE
Q psy2372         191 ITEE-EIYKLFREGFDIGIFNKIEYNLASRA-----LKLDDQCAITLMTPRMKVNFINIDDNI--EKNLIKILDSSYNYF  262 (447)
Q Consensus       191 ~s~~-el~~lv~~~~~~g~l~~~E~~~i~~~-----l~l~~~~V~dvM~pr~~v~~v~~~~tl--~e~~~~~~~~~~s~i  262 (447)
                      +|.+ ||...+.++..+-++=+--.+-=-..     ..+++..   ++-...+++.+..|.|-  .+..+.+.+.+.-..
T Consensus       459 ~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~---v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~  535 (569)
T COG4232         459 ISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQ---VQQALQDVVLLQADVTANDPAITALLKRLGVFGV  535 (569)
T ss_pred             cCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHH---HHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCC
Confidence            4444 99999988875432211101100000     1122222   23334577788877766  356667777766555


Q ss_pred             E---EEeCC---CCeEEEEEEhhhHHHHhHh
Q psy2372         263 P---VYKKS---ISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       263 P---V~~~~---~~~ivGiv~~~DLl~~~~~  287 (447)
                      |   +|+.+   ...+.|.++...+.+.+.+
T Consensus       536 P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~  566 (569)
T COG4232         536 PTYLFFGPQGSEPEILTGFLTADAFLEHLER  566 (569)
T ss_pred             CEEEEECCCCCcCcCCcceecHHHHHHHHHH
Confidence            5   45522   2346788888888877643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	447
3lhh_A	172	The Crystal Structure Of Cbs Domain Protein From Sh		1e-19
3ocm_A	173	The Crystal Structure Of A Domain From A Possible M		2e-15
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		2e-14
3oi8_A	156	The Crystal Structure Of Functionally Unknown Conse		9e-13
3ded_A	113	C-terminal Domain Of Probable Hemolysin From Chromo		1e-12
3lfr_A	136	The Crystal Structure Of A Cbs Domain From A Putati		3e-12
3hf7_A	130	The Crystal Structure Of A Cbs-Domain Pair With Bou		4e-11
2oai_A	94	The Structure Of Transporter Associated Domain Corc		4e-11
4hg0_A	292	Crystal Structure Of Magnesium And Cobalt Efflux Pr		2e-10
3lv9_A	148	Crystal Structure Of Cbs Domain Of A Putative Trans		3e-10
2pls_A	86	Structural Genomics, The Crystal Structure Of The C		1e-07
3oco_A	153	The Crystal Structure Of A Hemolysin-Like Protein C		1e-07
3nqr_A	127	A Putative Cbs Domain-Containing Protein From Salmo		1e-07
3i8n_A	130	A Domain Of A Conserved Functionally Known Protein		8e-05

>pdb|3LHH|A Chain A, The Crystal Structure Of Cbs Domain Protein From Shewanella Oneidensis Mr-1 Length = 172

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 95/181 (52%), Gaps = 12/181 (6%)
Query: 188 NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNI 247
           +D +T+E+I    +EG   G+    E+       +LD++   +L  PR  + F++++  +
Sbjct: 4   DDNVTQEDIQAXLQEGSSAGVIEHNEHAXVKNVFRLDERTISSLXVPRSDIVFLDLNLPL 63
Query: 248 EKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIP 307
           + NL  +  S ++ FPV + ++   +G ++ K L  + I+   +  +D+        F+P
Sbjct: 64  DANLRTVXQSPHSRFPVCRNNVDDXVGIISAKQLLSESIAGERLELVDLVKNCN---FVP 120
Query: 308 ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDG 367
            ++S  +LLE F+   S+   V+DEYG+L+G++T+ D   +L G+          F EDG
Sbjct: 121 NSLSGXELLEHFRTTGSQXVFVVDEYGDLKGLVTLQDXXDALTGEF---------FQEDG 171
Query: 368 S 368
           S
Sbjct: 172 S 172

>pdb|3OCM|A Chain A, The Crystal Structure Of A Domain From A Possible Membrane Protein Of Bordetella Parapertussis Length = 173

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 84/150 (56%), Gaps = 4/150 (2%)
Query: 209 FNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS 268
           F   E N  S  L L ++   ++ TPR  V+++NIDD+      ++  + +++FPV + S
Sbjct: 19  FGVEERNXVSGVLTLAERSIRSIXTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGS 78
Query: 269 ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSL 328
           + +++G    K L   +I+   +      + ++ P+ + E+I  ++L +T K+++ +L L
Sbjct: 79  LDEVVGIGRAKDLVADLITEGRVRR----NRLRDPIIVHESIGILRLXDTLKRSRGQLVL 134
Query: 329 VIDEYGELEGIITINDIIHSLIGDISNSYQ 358
           V DE+G +EG++T  D+  ++ G+  +  +
Sbjct: 135 VADEFGAIEGLVTPIDVFEAIAGEFPDEDE 164

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/123 (30%), Positives = 72/123 (58%), Gaps = 4/123 (3%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           +  PR + + ++I   + + L  I++++++ FPVY+     IIG L  K L +  +    
Sbjct: 10  IXVPRSRXDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYXLEPA- 68
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
              +DI S ++P +FIPE      LL  F+ +++ L++VIDE+G + G++T  D++  ++
Sbjct: 69  ---LDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTXEDVLEQIV 125
Query: 351 GDI 353
           GDI
Sbjct: 126 GDI 128

>pdb|3OI8|A Chain A, The Crystal Structure Of Functionally Unknown Conserved Protein Domain From Neisseria Meningitidis Mc58 Length = 156

Iteration: 1
 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 78/153 (50%), Gaps = 3/153 (1%)
Query: 194 EEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIK 253
           E++  L R+  +  +F+        + L   D         R + N +  +D+IE+    
Sbjct: 6   EDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAXITRSRXNVLKENDSIERITAY 65
Query: 254 ILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTM 313
           ++D++++ FPV  +   +++G L+ K L K   +        + S ++P +F+PE  S  
Sbjct: 66  VIDTAHSRFPVIGEDKDEVLGILHAKDLLKYXFNPE---QFHLKSILRPAVFVPEGKSLT 122
Query: 314 QLLETFKKNKSELSLVIDEYGELEGIITINDII 346
            LL+ F++ ++  ++VIDEYG   G++T  DII
Sbjct: 123 ALLKEFREQRNHXAIVIDEYGGTSGLVTFEDII 155

>pdb|3DED|A Chain A, C-terminal Domain Of Probable Hemolysin From Chromobacterium Violaceum Length = 113

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 49/84 (58%)
Query: 358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE 417
           ++EI   EDGSW++   ++ DRF+E    +   P +   N HTLAG  +  LG +P +++
Sbjct: 26  EDEIVQREDGSWLVDGXVSLDRFREFFELEAPLPGEAGGNIHTLAGVXLYQLGRVPSVTD 85
Query: 418 NFIWKNIKIEVIDMNNNKIERLLV 441
            F W     EV+D +  +++++LV
Sbjct: 86  RFEWNGFSFEVVDXDRTRVDKILV 109

>pdb|3LFR|A Chain A, The Crystal Structure Of A Cbs Domain From A Putative Metal Ion Transporter Bound To Amp From Pseudomonas Syringae To 1.55a Length = 136

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 69/130 (53%), Gaps = 1/130 (0%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           +  PR +   I       + L  ++D++++ +PV  +S   ++G L  K L   I+    
Sbjct: 8   IXVPRSQXISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG 67
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
             + D+   ++P  F+PE+     LL  F+ N +  ++VIDEYG + G++TI D++  ++
Sbjct: 68  DSD-DVKKLLRPATFVPESKRLNVLLREFRANHNHXAIVIDEYGGVAGLVTIEDVLEQIV 126
Query: 351 GDISNSYQEE 360
           GDI + +  E
Sbjct: 127 GDIEDEHDVE 136

>pdb|3HF7|A Chain A, The Crystal Structure Of A Cbs-Domain Pair With Bound Amp From Klebsiella Pneumoniae To 2.75a Length = 130

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 67/124 (54%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           +M PR ++  I+I+D+ +  + ++  S +    +Y+ S+   I  L  +  ++ +   + 
Sbjct: 7   IMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE 66
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
                +  A     F+PE       L  F++NK ++ LV+DEYG+++G++T+ DI+  ++
Sbjct: 67  FTKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV 126
Query: 351 GDIS 354
           GD +
Sbjct: 127 GDFT 130

>pdb|2OAI|A Chain A, The Structure Of Transporter Associated Domain Corc_hlyc From A Xylella Fastidiosa Temecula1 Hemolysin. Length = 94

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
           EDGS++I  ++  +  +E+L  ++  P     NYHTLAG  +++ G IP + E F W   
Sbjct: 16  EDGSFLIDGTLPIEELREVLGAEL--PDGEENNYHTLAGXCISYFGRIPHVGEYFDWAGW 73
Query: 425 KIEVIDMNNNKIERLLVTILN 445
           +IE++D++  +I+ LL+  LN
Sbjct: 74  RIEIVDLDGARIDXLLLQRLN 94

>pdb|4HG0|A Chain A, Crystal Structure Of Magnesium And Cobalt Efflux Protein Corc, Northeast Structural Genomics Consortium (nesg) Target Er40 Length = 292

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/226 (21%), Positives = 98/226 (43%), Gaps = 11/226 (4%)
Query: 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284
           DQ    +  PR +   +  +  +++ L  I++S+++ FPV  +    I G L  K L   
Sbjct: 66  DQRVRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLLPF 125
Query: 285 IISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
             S+    + D    ++  + +PE+    + L+ F+  +   ++VIDE+G + G++TI D
Sbjct: 126 XRSDAEAFSXD--KVLRQAVVVPESKRVDRXLKEFRSQRYHXAIVIDEFGGVSGLVTIED 183
Query: 345 IIHSLIG----DISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHT 400
           I+  ++G    +       +       +W + A  + + F E      +          T
Sbjct: 184 ILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALASIEDFNEAFGTHFS-----DEEVDT 238
Query: 401 LAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446
           + G V    GH+P   E       + +V   ++ +I ++ V I +D
Sbjct: 239 IGGLVXQAFGHLPARGETIDIDGYQFKVAXADSRRIIQVHVKIPDD 284

>pdb|3LV9|A Chain A, Crystal Structure Of Cbs Domain Of A Putative Transporter From Clostridium Difficile 630 Length = 148

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 80/149 (53%), Gaps = 5/149 (3%)
Query: 207 GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYK 266
           G+ ++ E  L     + +++    +  PR     I   D+ EK L  + +     +PV +
Sbjct: 4   GLIDESEQRLVDNIFEFEEKKIREIXVPRTDXVCIYESDSEEKILAILKEEGVTRYPVCR 63
Query: 267 KSISKIIGTLNTKTLF-KKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSE 325
           K+   I+G ++ + L+ +KI  N+    I++   ++  ++I E ++  + LE  +K K +
Sbjct: 64  KNKDDILGFVHIRDLYNQKINENK----IELEEILRDIIYISENLTIDKALERIRKEKLQ 119
Query: 326 LSLVIDEYGELEGIITINDIIHSLIGDIS 354
           L++V+DEYG   G++TI DI+  ++G+I 
Sbjct: 120 LAIVVDEYGGTSGVVTIEDILEEIVGEIQ 148

>pdb|2PLS|A Chain A, Structural Genomics, The Crystal Structure Of The CorcHLYC Transporter Associated Domain Of A Cbs Domain Protein From Chlorobium Tepidum Tls Length = 86

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
           EDGSW++   +     K+ L  +   P +    YHTL+G +   LG +P+  +   W+N 
Sbjct: 7   EDGSWLLDGLIAVPELKDTLGLRA-VPEEEKGVYHTLSGXIXWLLGRLPQTGDITFWENW 65
Query: 425 KIEVIDMNNNKIERLLVTILN 445
           ++EVID ++ +I+++L T ++
Sbjct: 66  RLEVIDXDSKRIDKVLATKID 86

>pdb|3OCO|A Chain A, The Crystal Structure Of A Hemolysin-Like Protein Containing Cbs Domain Of Oenococcus Oeni Psu Length = 153

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 12/151 (7%)
Query: 215 NLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPV-YKKSISKII 273
           N   RA + +D+ A  +   R   + +++D+ I   L+  L+  Y+ FPV       KII
Sbjct: 9   NFXQRAFEXNDKVASDVXVDRTSXSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKII 68
Query: 274 G-TLNTKTLFKKIISNR---SIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLV 329
           G   N   + +  I ++   S +  DI S       +PE      + E    ++   ++V
Sbjct: 69  GYAYNYDIVRQARIDDKAKISTIXRDIVS-------VPENXKVPDVXEEXSAHRVPXAIV 121
Query: 330 IDEYGELEGIITINDIIHSLIGDISNSYQEE 360
           IDEYG   GIIT  D+   L G++ +   +E
Sbjct: 122 IDEYGGTSGIITDKDVYEELFGNLRDEQDDE 152

>pdb|3NQR|A Chain A, A Putative Cbs Domain-Containing Protein From Salmonella Typhimurium Lt2 Length = 127

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 2/128 (1%)
Query: 225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK 284
           DQ    +  PR +   +  +  +++ L  I++S+++ FPV  +    I G L  K L   
Sbjct: 2   DQRVRDIXIPRSQXITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILXAKDLLPF 61
Query: 285 IISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
             S+    + D    ++  + +PE+    + L+ F+  +   ++VIDE+G + G++TI D
Sbjct: 62  XRSDAEAFSXD--KVLRTAVVVPESKRVDRXLKEFRSQRYHXAIVIDEFGGVSGLVTIED 119
Query: 345 IIHSLIGD 352
           I+  ++G+
Sbjct: 120 ILELIVGE 127

>pdb|3I8N|A Chain A, A Domain Of A Conserved Functionally Known Protein From Vibrio Parahaemolyticus Rimd 2210633. Length = 130

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           + TPR  V  ++    I + L K  D+ ++   VY +    IIG ++   LFK   S   
Sbjct: 11  VXTPRPVVFRVDATXTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKXQQSGSG 70
Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
                + +  +P   +    +  ++ +    ++ +L+LV+DEYG + G++T+ DI   L+
Sbjct: 71  --QKQLGAVXRPIQVVLNNTALPKVFDQXXTHRLQLALVVDEYGTVLGLVTLEDIFEHLV 128
Query: 351 GD 352
           G+
Sbjct: 129 GE 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	447
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	1e-47
3ocm_A	173	Putative membrane protein; structural genomics, PS	4e-41
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	7e-34
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	5e-33
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	3e-32
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	9e-30
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	9e-30
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	1e-29
3oco_A	153	Hemolysin-like protein containing CBS domains; str	7e-29
3ded_A	113	Probable hemolysin; structural genomics, P protein	2e-28
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	8e-28
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	2e-26
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	1e-25
2p13_A	90	CBS domain; alpha-beta structure, structural genom	8e-24
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	1e-23
2nqw_A	93	CBS domain protein; PFAM03471, hemolysins, CBS dom	3e-23
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	6e-22
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	3e-17
2pli_A	91	Uncharacterized protein; CORC-associated region, M	4e-16
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	4e-16
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	3e-15
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	9e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	3e-11
1vr9_A	213	CBS domain protein/ACT domain protein; structural	2e-06
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	3e-06
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	8e-06
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-05
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	6e-05
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-04

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score =  160 bits (407), Expect = 1e-47
 Identities = 45/168 (26%), Positives = 100/168 (59%), Gaps = 3/168 (1%)

Query: 186 KKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDD 245
             +D +T+E+I  + +EG   G+    E+ +     +LD++   +LM PR  + F++++ 
Sbjct: 2   HLDDNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNL 61

Query: 246 NIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLF 305
            ++ NL  ++ S ++ FPV + ++  ++G ++ K L  + I+      +++   ++   F
Sbjct: 62  PLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE---RLELVDLVKNCNF 118

Query: 306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI 353
           +P ++S M+LLE F+   S++  V+DEYG+L+G++T+ D++ +L G+ 
Sbjct: 119 VPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEF 166

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score =  143 bits (363), Expect = 4e-41
 Identities = 41/173 (23%), Positives = 91/173 (52%), Gaps = 7/173 (4%)

Query: 188 NDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNI 247
           ++   E ++            F   E N+ S  L L ++   ++MTPR  V+++NIDD+ 
Sbjct: 1   SNASDESDLPSAMPAV---PAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDA 57

Query: 248 EKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIP 307
                ++  + +++FPV + S+ +++G    K L   +I+          + ++ P+ + 
Sbjct: 58  ATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITE----GRVRRNRLRDPIIVH 113

Query: 308 ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
           E+I  ++L++T K+++ +L LV DE+G +EG++T  D+  ++ G+  +  +  
Sbjct: 114 ESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDELP 166

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score =  123 bits (311), Expect = 7e-34
 Identities = 41/156 (26%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 191 ITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKN 250
            + E++  L R+  +  +F+        + L   D      M  R ++N +  +D+IE+ 
Sbjct: 3   ASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERI 62

Query: 251 LIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETI 310
              ++D++++ FPV  +   +++G L+ K L K + +        + S ++P +F+PE  
Sbjct: 63  TAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPE---QFHLKSILRPAVFVPEGK 119

Query: 311 STMQLLETFKKNKSELSLVIDEYGELEGIITINDII 346
           S   LL+ F++ ++ +++VIDEYG   G++T  DII
Sbjct: 120 SLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII 155

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score =  120 bits (303), Expect = 5e-33
 Identities = 31/123 (25%), Positives = 66/123 (53%)

Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
           M PR ++  I+I+D+ +  + ++  S +    +Y+ S+   I  L  +  ++ +   +  
Sbjct: 8   MVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEF 67

Query: 292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
               +  A     F+PE       L  F++NK ++ LV+DEYG+++G++T+ DI+  ++G
Sbjct: 68  TKEIMLRAADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVG 127

Query: 352 DIS 354
           D +
Sbjct: 128 DFT 130

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score =  118 bits (299), Expect = 3e-32
 Identities = 38/147 (25%), Positives = 80/147 (54%), Gaps = 3/147 (2%)

Query: 207 GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYK 266
           G+ ++ E  L     + +++    +M PR  +  I   D+ EK L  + +     +PV +
Sbjct: 4   GLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCR 63

Query: 267 KSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSEL 326
           K+   I+G ++ + L+ + I+      I++   ++  ++I E ++  + LE  +K K +L
Sbjct: 64  KNKDDILGFVHIRDLYNQKINEN---KIELEEILRDIIYISENLTIDKALERIRKEKLQL 120

Query: 327 SLVIDEYGELEGIITINDIIHSLIGDI 353
           ++V+DEYG   G++TI DI+  ++G+I
Sbjct: 121 AIVVDEYGGTSGVVTIEDILEEIVGEI 147

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score =  111 bits (280), Expect = 9e-30
 Identities = 39/122 (31%), Positives = 75/122 (61%), Gaps = 4/122 (3%)

Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
           M PR +++ ++I   + + L  I++++++ FPVY+     IIG L  K L + ++     
Sbjct: 11  MVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--- 67

Query: 292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
             +DI S ++P +FIPE      LL  F+ +++ L++VIDE+G + G++T+ D++  ++G
Sbjct: 68  -ALDIRSLVRPAVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG 126

Query: 352 DI 353
           DI
Sbjct: 127 DI 128

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score =  111 bits (281), Expect = 9e-30
 Identities = 37/129 (28%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
           M PR ++  I       + L  ++D++++ +PV  +S   ++G L  K L   I+     
Sbjct: 9   MVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADG- 67

Query: 292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
            + D+   ++P  F+PE+     LL  F+ N + +++VIDEYG + G++TI D++  ++G
Sbjct: 68  DSDDVKKLLRPATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVG 127

Query: 352 DISNSYQEE 360
           DI + +  E
Sbjct: 128 DIEDEHDVE 136

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score =  111 bits (280), Expect = 1e-29
 Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 2/130 (1%)

Query: 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282
             D     +MTPR  V  ++    I + L K  D+ ++   VY +    IIG ++   LF
Sbjct: 3   AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELF 62

Query: 283 KKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITI 342
           K   S        + + ++P   +    +  ++ +    ++ +L+LV+DEYG + G++T+
Sbjct: 63  KMQQSGSG--QKQLGAVMRPIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTL 120

Query: 343 NDIIHSLIGD 352
            DI   L+G+
Sbjct: 121 EDIFEHLVGE 130

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score =  109 bits (276), Expect = 7e-29
 Identities = 37/152 (24%), Positives = 77/152 (50%), Gaps = 4/152 (2%)

Query: 210 NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYK-KS 268
           ++ + N   RA +++D+ A  +M  R  ++ +++D+ I   L+  L+  Y+ FPV     
Sbjct: 4   DEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND 63

Query: 269 ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSL 328
             KIIG      + ++   +       I++ ++  + +PE +    ++E    ++  +++
Sbjct: 64  KDKIIGYAYNYDIVRQARIDD---KAKISTIMRDIVSVPENMKVPDVMEEMSAHRVPMAI 120

Query: 329 VIDEYGELEGIITINDIIHSLIGDISNSYQEE 360
           VIDEYG   GIIT  D+   L G++ +   +E
Sbjct: 121 VIDEYGGTSGIITDKDVYEELFGNLRDEQDDE 152

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4 Length = 113

 Score =  107 bits (269), Expect = 2e-28
 Identities = 30/94 (31%), Positives = 53/94 (56%)

Query: 349 LIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTF 408
           L     +  ++EI   EDGSW++   ++ DRF+E    +   P +   N HTLAG ++  
Sbjct: 17  LYFQGHDGEEDEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQ 76

Query: 409 LGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT 442
           LG +P +++ F W     EV+DM+  +++++LV 
Sbjct: 77  LGRVPSVTDRFEWNGFSFEVVDMDRTRVDKILVQ 110

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score =  105 bits (266), Expect = 8e-28
 Identities = 30/121 (24%), Positives = 67/121 (55%), Gaps = 2/121 (1%)

Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
           M PR ++  +  +  +++ L  I++S+++ FPV  +    I G L  K L   + S+   
Sbjct: 9   MIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE- 67

Query: 292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
               +   ++  + +PE+    ++L+ F+  +  +++VIDE+G + G++TI DI+  ++G
Sbjct: 68  -AFSMDKVLRTAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVG 126

Query: 352 D 352
           +
Sbjct: 127 E 127

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A* Length = 94

 Score =  101 bits (254), Expect = 2e-26
 Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 2/81 (2%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
           EDGS++I  ++  +  +E+L      P     NYHTLAG  +++ G IP + E F W   
Sbjct: 16  EDGSFLIDGTLPIEELREVLG--AELPDGEENNYHTLAGMCISYFGRIPHVGEYFDWAGW 73

Query: 425 KIEVIDMNNNKIERLLVTILN 445
           +IE++D++  +I+ LL+  LN
Sbjct: 74  RIEIVDLDGARIDXLLLQRLN 94

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4 Length = 86

 Score = 98.7 bits (247), Expect = 1e-25
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
           EDGSW++   +     K+ L      P +    YHTL+G +M  LG +P+  +   W+N 
Sbjct: 7   EDGSWLLDGLIAVPELKDTL-GLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENW 65

Query: 425 KIEVIDMNNNKIERLLVTILN 445
           ++EVIDM++ +I+++L T ++
Sbjct: 66  RLEVIDMDSKRIDKVLATKID 86

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4 Length = 90

 Score = 93.7 bits (234), Expect = 8e-24
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE 417
           +   E   DG+W++   ++  +   LL    +   + +  Y TL G+++   G+IP   E
Sbjct: 6   KVVAEQQADGTWLMDGWISIRKASNLLE--HDLVDE-AERYSTLGGYLLWQFGYIPAAGE 62

Query: 418 NFIWKNIKIEVIDMNNNKIERLLVT 442
                 +  E++ +N + I ++ V 
Sbjct: 63  QITVDGLIFEIVSVNKHNIGKVRVH 87

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4 Length = 92

 Score = 93.3 bits (233), Expect = 1e-23
 Identities = 18/80 (22%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
            D S  +  ++ +      L+  +    +   ++HT+AG +M  L  IP + +   +   
Sbjct: 15  PDESLTVEGALEYVELAPQLN--LPQQEE-DADFHTVAGLIMEELQTIPDVGDFADFHGW 71

Query: 425 KIEVIDMNNNKIERLLVTIL 444
           + EV++    +IER+ +T L
Sbjct: 72  RFEVVEKEGQRIERVKITKL 91

>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4 Length = 93

 Score = 92.7 bits (231), Expect = 3e-23
 Identities = 12/80 (15%), Positives = 32/80 (40%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
            DGS++     +    +  L    N   ++     TL+G  +     +P + +  +++  
Sbjct: 13  GDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPF 72

Query: 425 KIEVIDMNNNKIERLLVTIL 444
           + +V  M+  +I  + +   
Sbjct: 73  RFQVTQMDKRRIIEIKIFPF 92

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4 Length = 86

 Score = 88.7 bits (221), Expect = 6e-22
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
            + SW+I  +   +     L N   FP     NY T+ GF+M  L  IP  ++  ++   
Sbjct: 7   NEDSWLIDGATPLEDVMRAL-NIHTFPR--DENYETIGGFMMYMLRXIPXXTDFVLYDXY 63

Query: 425 KIEVIDMNNNKIERLLVTILND 446
             E+ID  N +I++L+V+   D
Sbjct: 64  XFEIIDTENFRIDQLMVSFRXD 85

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} Length = 83

 Score = 75.3 bits (186), Expect = 3e-17
 Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
             G +I+ A    D F +       F       + T+ G VM+  GH+PK +E       
Sbjct: 7   PSGDFIVKALTPVDAFNDFFG--SEFS---DEEFDTVGGLVMSAFGHLPKRNEVVELGEF 61

Query: 425 KIEVIDMNNNKIERLLVTILND 446
           +  V++ ++ ++  L ++ L +
Sbjct: 62  RFRVLNADSRRVHLLRLSPLQN 83

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4 Length = 91

 Score = 72.2 bits (178), Expect = 4e-16
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
           + I       W I A+   +           +    S    T+ G V+  LGH+P   E 
Sbjct: 10  DNIHAVSSERWRIHAATEIEDINTFFG--TEYS---SEEADTIGGLVIQELGHLPVRGEK 64

Query: 419 FIWKNIKIEVIDMNNNKIERLLVTIL 444
            +   ++  V   +N ++  L+ T +
Sbjct: 65  VLIGGLQFTVARADNRRLHTLMATRV 90

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} PDB: 2o1r_A* Length = 81

 Score = 71.8 bits (177), Expect = 4e-16
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENF 419
                 DGS II  S       ++ +         + +  T  G ++  L  IP      
Sbjct: 2   NAIQQSDGSMIIDGSANLRDLNKMFN--WELD---TEDARTFNGLILEHLEEIPDEGTIC 56

Query: 420 IWKNIKIEVIDMNNNKIERLLVTIL 444
               + I ++++ +N I++  V  L
Sbjct: 57  EIDGLLITILEVGDNMIKQAKVVKL 81

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4 Length = 93

 Score = 69.9 bits (172), Expect = 3e-15
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE- 417
                  D  +++   M  D F E+   + +       +  T+AG+++T LG IP   E 
Sbjct: 8   NLYTQVADNEYLVQGRMLIDEFNEVF--ETDLH---MSDVDTMAGYLITALGTIPDEGEK 62

Query: 418 -NFIWKNIKIEVIDMNNNKIERLLVTILNDK 447
            +F   NIK+   +M   ++  L V   +++
Sbjct: 63  PSFEVGNIKLTAEEMEGTRLLVLRVHFYDEE 93

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4 Length = 101

 Score = 65.9 bits (161), Expect = 9e-14
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 22/104 (21%)

Query: 358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE 417
            E+I       W+I      D  +  +      P     +Y T++G +      + K  +
Sbjct: 3   AEDITETSPDKWLIDGDTPLDEVERAIG--YELP---EGDYETISGLLFDHANALLKTGD 57

Query: 418 NF-----------------IWKNIKIEVIDMNNNKIERLLVTIL 444
                                + ++I V+++  N   +L + +L
Sbjct: 58  VIEIPLDFEPEDYLNNTSPTQRILRITVLEVERNVPVKLALALL 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 1e-12
 Identities = 65/454 (14%), Positives = 134/454 (29%), Gaps = 158/454 (34%)

Query: 88  GAFGESSLVASLTPKIRFFSLMRDHAHEISLVIVVFSITFFSLIFGELIPKRIAMQYSEK 147
              G++ +            +   +  +  +   +F +                      
Sbjct: 159 LGSGKTWVAL---------DVCLSYKVQCKMDFKIFWLN-----LKN----------CNS 194

Query: 148 AASIISPLMLFLLKLMGPFVKILTISTESILDIFNIKYKKNDLITEEEIYKLFREGFDIG 207
             +++  L   L ++   +      S+   L I +I+ +   L+  +  Y+         
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YE--------- 244

Query: 208 IFNKIEYNLASRALK-LDD------------QCAITLMTPRMK--VNFINI--------- 243
                        L  L +             C I L+T R K   +F++          
Sbjct: 245 -----------NCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLD 292

Query: 244 -------DDNIEKNLIKILDSSYNYFPVYKKSIS----KIIGTL-----NTKTLFKKIIS 287
                   D ++  L+K LD      P    + +     II         T   +K +  
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 288 NRSIVNIDITSAIQPP---------LFI-PETIS-TMQLLETF--KKNKSELSLVIDE-- 332
           ++    I+ +  +  P         L + P +      LL        KS++ +V+++  
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 333 -YGEL-----EGIITINDI-------------IH-SLIGDISNSYQEEIEFC-------- 364
            Y  +     E  I+I  I             +H S++    + Y     F         
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHYNIPKTFDSDDLIPPY 468

Query: 365 EDGSW-------IISASMT--FDRFKELLSNQVNF-PVKISRNYHTL---AGFVMTFLGH 411
            D  +       + +         F+ +  +   F   KI R+  T    +G ++  L  
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKI-RHDSTAWNASGSILNTLQQ 526

Query: 412 IPKISENFIWKNIKIEVIDMNNNKIERLLVTILN 445
           + K  + +I           N+ K ERL+  IL+
Sbjct: 527 L-KFYKPYICD---------NDPKYERLVNAILD 550

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 3e-06
 Identities = 34/288 (11%), Positives = 89/288 (30%), Gaps = 65/288 (22%)

Query: 179 DIFNIKYKKNDLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTP---- 234
           +    +Y+  D++        F + FD      ++ ++    L   ++    +M+     
Sbjct: 10  ETGEHQYQYKDIL--SVFEDAFVDNFD---CKDVQ-DMPKSILS-KEEIDHIIMSKDAVS 62

Query: 235 RMKVNFINIDDN----IEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI-ISNR 289
                F  +       ++K + ++L  +Y +       +S I       ++  ++ I  R
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL------MSPIKTEQRQPSMMTRMYIEQR 116

Query: 290 SIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH-- 347
             +  D        +F    +S +Q     ++   EL          + +     +I   
Sbjct: 117 DRLYND------NQVFAKYNVSRLQPYLKLRQALLELR-------PAKNV-----LIDGV 158

Query: 348 ------SLIGDISNSYQEEIEFCEDGSWIISASMTF---DRFKELLSNQVNFPVKISRNY 398
                  +  D+  SY+ + +      W+          +  + +L        +I  N+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWL-----NLKNCNSPETVLEMLQKLLYQIDPNW 213

Query: 399 HTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILND 446
            + +        H   I         ++  +  +      LL  +L +
Sbjct: 214 TSRS-------DHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLN 252

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4 Length = 87

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 11/90 (12%)

Query: 360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE-- 417
           +     D ++I+  +MT + F E    + +     S N  T+AGF +T +G IP   E  
Sbjct: 1   QSREIADNTYIVLGTMTLNDFNEYF--ETDLE---SDNVDTIAGFYLTGVGTIPSQEEKE 55

Query: 418 ----NFIWKNIKIEVIDMNNNKIERLLVTI 443
                   K++++    + + ++ +L + +
Sbjct: 56  HFEVESNGKHLELINDKVKDGRVTKLKILV 85

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 18/125 (14%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
            +T       +     + + L ++     N   V  +      G          +++   
Sbjct: 18  WVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRG----------VVNKED 64

Query: 291 IVNIDITSAIQ-----PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI 345
           ++++D+ S++      P  F+ E  +    L  F +++     V+DE   L+G ++++D 
Sbjct: 65  LLDLDLDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDF 124

Query: 346 IHSLI 350
           + +LI
Sbjct: 125 LEALI 129

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 22/125 (17%), Positives = 41/125 (32%), Gaps = 9/125 (7%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
            M    KV  + + +N+E  L+ +  + Y   PV   S  ++ G + T  +   I     
Sbjct: 19  FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLER 77

Query: 291 IVNIDITSA------IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
           I    +         +     +      M+       N      V ++    EGI T   
Sbjct: 78  IEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRV 135

Query: 345 IIHSL 349
           ++  L
Sbjct: 136 VLKEL 140

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           LM    KV  + I + +E  L+ ++ S Y+  PV      K+ G + +  +    I    
Sbjct: 20  LMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YKLHGLI-STAMILDGILGLE 77

Query: 291 IVNIDITSAIQ-------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN 343
            +  +    ++           +    S  + LE    +       ++E G  EGI+T  
Sbjct: 78  RIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHP--FICAVNEDGYFEGILTRR 135

Query: 344 DIIHSL 349
            I+  L
Sbjct: 136 AILKLL 141

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 20/137 (14%), Positives = 47/137 (34%), Gaps = 11/137 (8%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
            + P  KV  +   + ++  L+ +  + Y+  PV   S  K+ G + + T+    I    
Sbjct: 16  FLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-YKLHGLI-SMTMMMDAILGLE 73

Query: 291 IVNIDITSAIQ-------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN 343
            +  +    ++           +    S M+ +     +      V ++ G   GI T  
Sbjct: 74  RIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHP--FVCVENDDGYFAGIFTRR 131

Query: 344 DIIHSLIGDISNSYQEE 360
           +++  L   +       
Sbjct: 132 EVLKQLNKQLHRPNGGR 148

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 285 IISNRSIVNIDITSAI-----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGI 339
           IIS + I+       +     +    + E  +  +  +   +      +V+D  G+  GI
Sbjct: 47  IISVKRILVNPDEEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGI 106

Query: 340 ITINDIIHSLI 350
           +T+ DII    
Sbjct: 107 LTVGDIIRRYF 117

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 22/174 (12%), Positives = 55/174 (31%), Gaps = 13/174 (7%)

Query: 190 LITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEK 249
           L+T  ++                 Y++++  +          MTP      +    +   
Sbjct: 64  LLTTRDLLSTVESYCKDSCSQGDLYHISTTPII-------DYMTP--NPVTVYNTSDEFT 114

Query: 250 NLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNI-DITSAIQPPLFIPE 308
            +  ++  ++   PV   +  K +G +  +           I  +    S       I +
Sbjct: 115 AINIMVTRNFGSLPVVDIND-KPVGIVTEREFLLLYKDLDEIFPVKVFMS--TKVQTIYK 171

Query: 309 TISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIE 362
            +   Q ++   +       VID+  ++ GI+T+ + I  L   +     +   
Sbjct: 172 EVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFY 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	447
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.96
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.95
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.95
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.93
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.91
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.9
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.89
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.89
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.89
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.88
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.86
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.84
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.84
2pli_A	91	Uncharacterized protein; CORC-associated region, M	99.84
3ded_A	113	Probable hemolysin; structural genomics, P protein	99.84
3llb_A	83	Uncharacterized protein; protein PA3983, unknown f	99.84
3lae_A	81	UPF0053 protein HI0107; APC85784.2, conserved prot	99.84
2oai_A	94	Hemolysin; PFAM03471, xylella fastidiosa temecula1	99.83
2p13_A	90	CBS domain; alpha-beta structure, structural genom	99.83
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.82
2r2z_A	93	Hemolysin; APC85144, enterococcus faecalis V583, S	99.82
2p4p_A	86	Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03	99.82
2o3g_A	92	Putative protein; APC85631.1, neisseria meningitid	99.8
2rk5_A	87	Putative hemolysin; structural genomics, PSI-2, MC	99.8
2pls_A	86	CBS domain protein; APC86064.2, CORC/HLYC transpor	99.79
4esy_A	170	CBS domain containing membrane protein; structural	99.79
2nqw_A	93	CBS domain protein; PFAM03471, hemolysins, CBS dom	99.78
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.77
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.76
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.76
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.76
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.76
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.76
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.75
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.75
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.75
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.74
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.74
2p3h_A	101	Uncharacterized CBS domain-containing protein; str	99.74
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.74
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.73
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.73
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.73
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.73
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.73
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.73
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.72
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.72
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.72
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.72
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.72
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.71
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.7
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.69
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.69
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.69
3ddj_A	296	CBS domain-containing protein; structural genomics	99.68
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.68
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.68
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.65
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.65
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.63
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.63
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.62
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.61
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.61
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.61
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.6
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.59
3ddj_A	296	CBS domain-containing protein; structural genomics	99.59
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.58
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.57
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.56
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.56
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.54
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.54
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.51
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.49
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.17
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.15
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.78
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.78
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.62
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.52
4esy_A	170	CBS domain containing membrane protein; structural	98.36
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.3
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.29
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.29
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.28
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.26
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.25
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.23
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.23
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.21
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.21
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.19
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.19
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.18
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.18
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.18
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.18
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.17
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.16
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.14
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.14
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.13
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.12
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.12
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.11
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.11
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.09
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.06
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.04
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.04
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.03
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.02
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.01
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.01
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.98
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.98
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.97
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.94
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.93
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.92
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.86
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	97.84
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.83
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.8
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.8
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.49
2oux_A	286	Magnesium transporter; 10001B, structural genomics	97.44
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.4
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.25
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.25
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.15
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.12
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.97
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	96.89
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.52
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.49

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.96  E-value=5.2e-29  Score=225.13  Aligned_cols=164  Identities=27%  Similarity=0.633  Sum_probs=116.9

Q ss_pred             CCCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC
Q psy2372         189 DLITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS  268 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~  268 (447)
                      ..+|++||+.+++.+.+.|.++++|++++++++++.+.+|+++|+|+.+++++++++++.++++.|.+++++++||++++
T Consensus         5 ~~~t~~el~~l~~~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~   84 (172)
T 3lhh_A            5 DNVTQEDIQAMLQEGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNN   84 (172)
T ss_dssp             --------------------------------------CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSS
T ss_pred             ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999864


Q ss_pred             CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         269 ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       269 ~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      .++++|+|+.+|+++...++..   .+++++|++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|++++
T Consensus        85 ~~~lvGivt~~dl~~~~~~~~~---~~v~~im~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~  161 (172)
T 3lhh_A           85 VDDMVGIISAKQLLSESIAGER---LELVDLVKNCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDA  161 (172)
T ss_dssp             TTSEEEEEEHHHHHHHHHTTCC---CCGGGGCBCCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CCeEEEEEEHHHHHHHHhhcCc---ccHHHHhcCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHH
Confidence            4899999999999998765443   7899999889999999999999999999999999999999999999999999999


Q ss_pred             Hhccc-cc
Q psy2372         349 LIGDI-SN  355 (447)
Q Consensus       349 i~gei-~e  355 (447)
                      ++|++ ||
T Consensus       162 l~~~~~de  169 (172)
T 3lhh_A          162 LTGEFFQE  169 (172)
T ss_dssp             HHTTCC--
T ss_pred             HhCCCccc
Confidence            99998 65

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.95  E-value=5e-28  Score=215.06  Aligned_cols=155  Identities=26%  Similarity=0.525  Sum_probs=144.8

Q ss_pred             CCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCC
Q psy2372         190 LITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSI  269 (447)
Q Consensus       190 ~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~  269 (447)
                      .+|++||+.+++.+.++|.++++|++++++++++.+.+|+++|+|+.+++++++++++.++++.|.+++++++||++++.
T Consensus         2 ~~t~~el~~li~~~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~   81 (156)
T 3oi8_A            2 NASAEDVLNLLRQAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDK   81 (156)
T ss_dssp             CCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST
T ss_pred             CCCHHHHHHHHHhHHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC
Confidence            47999999999999999999999999999999999999999999988899999999999999999999999999998654


Q ss_pred             CeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         270 SKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       270 ~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++|+++.+|+++...++.   +.+++++|+++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+++
T Consensus        82 ~~lvGivt~~dl~~~~~~~~---~~~v~~im~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dile  156 (156)
T 3oi8_A           82 DEVLGILHAKDLLKYMFNPE---QFHLKSILRPAVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDIIE  156 (156)
T ss_dssp             TCEEEEEEGGGGGGGSSCGG---GCCHHHHCBCCCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHCC
T ss_pred             CcEEEEEEHHHHHHHHHcCC---cccHHHHcCCCEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhcC
Confidence            69999999999998765432   2789999999999999999999999999999999999999999999999999864

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.95  E-value=2.5e-27  Score=214.82  Aligned_cols=161  Identities=26%  Similarity=0.503  Sum_probs=137.0

Q ss_pred             HHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEh
Q psy2372         199 LFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNT  278 (447)
Q Consensus       199 lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~  278 (447)
                      +...+.++|.++++|++++++++++.+.+|+++|+|+++++++++++++.++++.|.+++++++||++++.++++|+|+.
T Consensus         9 ~~~~~~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~   88 (173)
T 3ocm_A            9 LPSAMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRA   88 (173)
T ss_dssp             ---------CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEH
T ss_pred             HHHhHHhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEH
Confidence            44567778999999999999999999999999999999999999999999999999999999999998655799999999


Q ss_pred             hhHHHHhHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cccc
Q psy2372         279 KTLFKKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSY  357 (447)
Q Consensus       279 ~DLl~~~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~  357 (447)
                      +|++++..++..   .+++ ++++++++++++++.++++.|.+++.+.+||+|++|+++|+||++|++++++|++ ||++
T Consensus        89 ~Dl~~~~~~~~~---~~v~-~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~~  164 (173)
T 3ocm_A           89 KDLVADLITEGR---VRRN-RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDE  164 (173)
T ss_dssp             HHHHHHHHHHSS---CCGG-GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEEEEECHHHHHHHHHCCCCCTTS
T ss_pred             HHHHHHHhcCCc---chhH-hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEEEEEeHHHHHHHHhCcCCCccc
Confidence            999988755433   6788 8899999999999999999999999999999999999999999999999999999 7754


Q ss_pred             ccceEE
Q psy2372         358 QEEIEF  363 (447)
Q Consensus       358 ~~~~~~  363 (447)
                      ++.+.+
T Consensus       165 ~~~~~~  170 (173)
T 3ocm_A          165 LPDIVA  170 (173)
T ss_dssp             CC----
T ss_pred             cHhhHh
Confidence            344433

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.93  E-value=7.7e-26  Score=198.61  Aligned_cols=146  Identities=26%  Similarity=0.545  Sum_probs=121.7

Q ss_pred             hcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH
Q psy2372         205 DIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK  284 (447)
Q Consensus       205 ~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~  284 (447)
                      ++|.++++|++++++++++.+.+|+++|+|+.+++++++++++.++++.|.+++++++||+|++.++++|+++.+|+++.
T Consensus         2 ~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~   81 (148)
T 3lv9_A            2 NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQ   81 (148)
T ss_dssp             ----------------CGGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CCCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHH
Confidence            56899999999999999999999999999988999999999999999999999999999998644799999999999998


Q ss_pred             hHhCCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         285 IISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       285 ~~~~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ..++..   .+++++|+++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|++++++|++
T Consensus        82 ~~~~~~---~~v~~~m~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~~i  147 (148)
T 3lv9_A           82 KINENK---IELEEILRDIIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVGEI  147 (148)
T ss_dssp             HHHHSC---CCGGGTCBCCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHHTC
T ss_pred             HhcCCC---ccHHHhcCCCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCcC
Confidence            765433   789999988999999999999999999999999999999999999999999999999975

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.91  E-value=4.1e-25  Score=195.31  Aligned_cols=145  Identities=25%  Similarity=0.500  Sum_probs=126.7

Q ss_pred             cchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEE-eCCCCeEEEEEEhhhHHHHhHh
Q psy2372         209 FNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVY-KKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       209 l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~-~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      ++++|++++++++++.+.+|+++|+|+.+++++++++++.++++.|.+++++++||+ +++.++++|+|+.+|+++....
T Consensus         3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~   82 (153)
T 3oco_A            3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARI   82 (153)
T ss_dssp             -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhc
Confidence            567899999999999999999999998889999999999999999999999999999 5444799999999999988765


Q ss_pred             CCCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc
Q psy2372         288 NRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS  356 (447)
Q Consensus       288 ~~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~  356 (447)
                      +..   .+++++|++++++++++++.++++.|.+++.+.+||+|++|+++|+||+.|++++++|++ +|+
T Consensus        83 ~~~---~~v~~~m~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~de~  149 (153)
T 3oco_A           83 DDK---AKISTIMRDIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRDEQ  149 (153)
T ss_dssp             HTT---SBGGGTCBCCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC------
T ss_pred             CCC---CcHHHHhCCCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCCcc
Confidence            443   789999988999999999999999999999999999999999999999999999999999 664

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.90  E-value=1.1e-23  Score=181.30  Aligned_cols=129  Identities=24%  Similarity=0.496  Sum_probs=115.7

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCe
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPL  304 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~  304 (447)
                      +.+|+++|+|+.+++++++++++.++++.|.+++++++||++++.++++|+++.+|++++..++......+++++|++++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m~~~~   80 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAADEIY   80 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHSBCCC
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhccCCe
Confidence            35799999999899999999999999999999999999999765589999999999999876544222246899999999


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||.+|++++++|++
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i  129 (130)
T 3hf7_A           81 FVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDF  129 (130)
T ss_dssp             EEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC--
T ss_pred             EeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999975

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.89  E-value=4.3e-23  Score=177.03  Aligned_cols=127  Identities=31%  Similarity=0.661  Sum_probs=115.4

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP  302 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~  302 (447)
                      ..+.+|+++|+|+++++++++++++.++++.|.+++++++||++++.++++|+++.+|+++...+ ..   .+++++|++
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~-~~---~~v~~~m~~   77 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE-PA---LDIRSLVRP   77 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC-TT---SCGGGGCBC
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc-CC---cCHHHHhCC
Confidence            35789999999999999999999999999999999999999998645899999999999987653 22   679999999


Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      +.++++++++.++++.|.+++.+.+||+|++|+++|+||++|++++++|++
T Consensus        78 ~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei  128 (129)
T 3jtf_A           78 AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI  128 (129)
T ss_dssp             CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999986

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.89  E-value=2e-23  Score=180.87  Aligned_cols=131  Identities=28%  Similarity=0.527  Sum_probs=112.9

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCe
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPL  304 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~  304 (447)
                      +.+|+++|+|+++++++++++++.++++.|.+++++++||++++.++++|+++.+|+++...++. ....+++++|++++
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~-~~~~~v~~~m~~~~   80 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD-GDSDDVKKLLRPAT   80 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS-GGGCCGGGTCBCCC
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc-CCCcCHHHHcCCCe
Confidence            57899999999899999999999999999999999999999865479999999999998875322 12368999999999


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS  356 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~  356 (447)
                      ++++++++.++++.|++++.+.+||+|++|+++|+||++|++++++|++ ||+
T Consensus        81 ~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~~~~~de~  133 (136)
T 3lfr_A           81 FVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIVGDIEDEH  133 (136)
T ss_dssp             EEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC--------
T ss_pred             EECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCCcCcc
Confidence            9999999999999999999999999999999999999999999999999 664

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.89  E-value=4.7e-23  Score=176.86  Aligned_cols=129  Identities=26%  Similarity=0.421  Sum_probs=115.3

Q ss_pred             ccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC
Q psy2372         222 KLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ  301 (447)
Q Consensus       222 ~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~  301 (447)
                      ++++.+|+++|+|+.+++++++++++.++++.|.+++++++||++++.++++|+++.+|+++...++..  ..+++++|+
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~--~~~v~~~m~   79 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSG--QKQLGAVMR   79 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTT--TSBHHHHSE
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCC--cCCHHHHhc
Confidence            467889999999998999999999999999999999999999998655899999999999998765432  278999999


Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|++++++|+
T Consensus        80 ~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~ge  130 (130)
T 3i8n_A           80 PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLVGE  130 (130)
T ss_dssp             ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHHTC
T ss_pred             CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHcCC
Confidence            899999999999999999999999999999999999999999999999985

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.88  E-value=1.5e-22  Score=172.97  Aligned_cols=126  Identities=25%  Similarity=0.519  Sum_probs=112.5

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCe
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPL  304 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~  304 (447)
                      +.+|+++|+|+.+++++++++++.++++.|.+++++++||++++.++++|+++.+|+++...++..  +.+++++|+++.
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~--~~~v~~~m~~~~   79 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE--AFSMDKVLRTAV   79 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCC--CCCHHHHCBCCC
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCC--CCCHHHHcCCCe
Confidence            578999999988889999999999999999999999999998654799999999999987654332  278999999999


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||++|++++++||
T Consensus        80 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~ge  127 (127)
T 3nqr_A           80 VVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGE  127 (127)
T ss_dssp             EEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC---
T ss_pred             EECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999885

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.86  E-value=8.5e-22  Score=175.27  Aligned_cols=126  Identities=16%  Similarity=0.287  Sum_probs=110.0

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----ccCCChhhhc
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----IVNIDITSAI  300 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----~~~~~v~~im  300 (447)
                      ..+++++|+|+.+++++++++|+++|++.|.+++++++||+|++ ++++|+++.+|++++......    ..+.++.++|
T Consensus        14 ~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im   92 (156)
T 3k6e_A           14 LGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-KQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMT   92 (156)
T ss_dssp             HTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC--CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTC
T ss_pred             hccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEecchhhhhhhcccccccccccCHHHhh
Confidence            45789999999999999999999999999999999999999854 899999999999987654221    1236789999


Q ss_pred             -CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         301 -QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       301 -~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                       +++.++++++++.++++.|.+++  ++||+|++|+++|+||++|+++++.+.+
T Consensus        93 ~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~~g~l~GiiT~~Dil~~~~~~~  144 (156)
T 3k6e_A           93 KTDVAVVSPDFTITEVLHKLVDES--FLPVVDAEGIFQGIITRKSILKAVNALL  144 (156)
T ss_dssp             BCSCCCBCTTCCHHHHHHHTTTSS--EEEEECTTSBEEEEEEHHHHHHHHHHHS
T ss_pred             cCCceecccccHHHHHHHHHHHcC--CeEEEecCCEEEEEEEHHHHHHHHHHHh
Confidence             57789999999999999998764  5999999999999999999999997655

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.84  E-value=1.8e-20  Score=174.27  Aligned_cols=139  Identities=11%  Similarity=0.095  Sum_probs=125.6

Q ss_pred             ccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhC---CCcEEEEEeCCCCeEEEEEEhhhHHHH
Q psy2372         208 IFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDS---SYNYFPVYKKSISKIIGTLNTKTLFKK  284 (447)
Q Consensus       208 ~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~---~~s~iPV~~~~~~~ivGiv~~~DLl~~  284 (447)
                      .++++|++++++++++.+.+|+++|+|  +++++++++|+.++++.|+++   +++.+||+|++ ++++|+|+.+|++..
T Consensus        36 ~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~~dll~~  112 (205)
T 3kxr_A           36 QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-DKYLGTVRRYDIFKH  112 (205)
T ss_dssp             HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-CBEEEEEEHHHHTTS
T ss_pred             cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-CeEEEEEEHHHHHhC
Confidence            478899999999999999999999996  778999999999999999987   78999999854 899999999999864


Q ss_pred             hHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccccc
Q psy2372         285 IISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISN  355 (447)
Q Consensus       285 ~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e  355 (447)
                      .   ..   .+++++| ++++++++++++.++++.|++++.+.+||+|++|+++|+||.+|+++.+.++.+|
T Consensus       113 ~---~~---~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~e~~e  178 (205)
T 3kxr_A          113 E---PH---EPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVREHYEA  178 (205)
T ss_dssp             C---TT---SBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHHHHC-
T ss_pred             C---Cc---chHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHHHHHH
Confidence            2   22   6799999 5788999999999999999999999999999999999999999999999876533

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.84  E-value=1.7e-21  Score=203.03  Aligned_cols=205  Identities=11%  Similarity=0.149  Sum_probs=168.2

Q ss_pred             CCCCHHHHHHHHHhchhc---------CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhC--
Q psy2372         189 DLITEEEIYKLFREGFDI---------GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDS--  257 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~---------g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~--  257 (447)
                      ..++++|+..++++..++         +.++++|++.+++++++.+.+++++|+|  +++++++++|++++++.++++  
T Consensus       109 ~~l~~dd~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~  186 (473)
T 2zy9_A          109 EELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAP  186 (473)
T ss_dssp             HHSCHHHHHHHHHHHHHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGG
T ss_pred             HhCCHHHHHHHHHhCCHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccC
Confidence            357899999999988887         8999999999999999999999999995  789999999999999999986  


Q ss_pred             ---CCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC
Q psy2372         258 ---SYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEY  333 (447)
Q Consensus       258 ---~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~  333 (447)
                         +++++||+|++ ++++|+++.+|++...   ..   .+++++| +++.++++++++.++++.|++++.+.+||+|++
T Consensus       187 ~~~~~~~ipVvd~~-~~lvGiVt~~Dll~~~---~~---~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~  259 (473)
T 2zy9_A          187 DAETIYYIYVVDEK-GRLKGVLSLRDLIVAD---PR---TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEE  259 (473)
T ss_dssp             GCSEEEEEEEECTT-SBEEEEEEHHHHHHSC---TT---SBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEEECTT
T ss_pred             CcCceeEEEEECCC-CcEEEEEEHHHHhcCC---CC---CcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC
Confidence               47999999865 8999999999998742   22   6899999 678999999999999999999999999999999


Q ss_pred             CCEEEEEeHHHHHHHHhcccccc--cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcC
Q psy2372         334 GELEGIITINDIIHSLIGDISNS--YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLG  410 (447)
Q Consensus       334 G~~iGiVT~~DIle~i~gei~e~--~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg  410 (447)
                      |+++|+||.+|+++.+.++.+++  ....+. .+++.|..++.  .+.+++.+++-  +.   ..-+.+++|+++.+++
T Consensus       260 g~lvGiIT~~Dil~~i~~e~~ed~~~~~~i~-~~~~~~~~~~v--~~~~~~R~~wl--~~---~~~~~~l~~~vi~~fe  330 (473)
T 2zy9_A          260 GRLVGIVTVDDVLDVLEAEATEDIHKLGAVD-VPDLVYSEAGP--VALWLARVRWL--VI---LILTGMVTSSILQGFE  330 (473)
T ss_dssp             SBEEEEEEHHHHHHHHHHHHHHHHHHHTTCC-CTTCCSSSCCH--HHHHHHHHHHH--HH---HHHHHHHHHHHHHHTH
T ss_pred             CEEEEEEehHhhHHHHHHHhhhhhhhccccc-cCcchhhhhHH--HHHHHHHhHHH--HH---HHHHHHHHHHHHHHHH
Confidence            99999999999999998876332  111111 23334544433  55667777664  32   1246899999988765

>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, Pro structure initiative; 1.70A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=99.84  E-value=1.8e-20  Score=151.41  Aligned_cols=83  Identities=19%  Similarity=0.441  Sum_probs=77.2

Q ss_pred             cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCee
Q psy2372         357 YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKI  436 (447)
Q Consensus       357 ~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri  436 (447)
                      +.+.+.+.++|+|+++|+++++|+++.||++  +|+   ++|+|||||+++++|++|++|+++.++||+|+|.+++++||
T Consensus         8 ~~~~i~~~~dg~~~v~G~~~l~dl~~~l~~~--l~~---~~~dTlgG~i~~~lg~iP~~Ge~v~~~~~~f~V~~~d~~rI   82 (91)
T 2pli_A            8 SADNIHAVSSERWRIHAATEIEDINTFFGTE--YSS---EEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRL   82 (91)
T ss_dssp             CCCSEEEEETTEEEEETTCBHHHHHHHHCCC--CCC---SSCCBHHHHHHHHHSSCCCTTCEEEETTEEEEEEEECSSCE
T ss_pred             cCcceEEeCCCEEEEEcCCCHHHHHHHhCCC--CCC---CCCccHHHHHHHHhCCCCCCCCEEEECCEEEEEEEEeCCEE
Confidence            3456888899999999999999999999999  883   37999999999999999999999999999999999999999


Q ss_pred             eEEEEEec
Q psy2372         437 ERLLVTIL  444 (447)
Q Consensus       437 ~~v~v~~~  444 (447)
                      .+|++++.
T Consensus        83 ~~v~v~~~   90 (91)
T 2pli_A           83 HTLMATRV   90 (91)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99999865

>3ded_A Probable hemolysin; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4

Probab=99.84  E-value=1.7e-20  Score=157.43  Aligned_cols=93  Identities=31%  Similarity=0.676  Sum_probs=76.7

Q ss_pred             ccc-ccc--cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEE
Q psy2372         351 GDI-SNS--YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIE  427 (447)
Q Consensus       351 gei-~e~--~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~  427 (447)
                      .+| ||+  +++.+.+.++|+|+++|+++++|+++.||++.++|.+++++|+|||||+++++|++|++|+++.++||+|+
T Consensus        16 ~~I~DE~D~ee~~i~~~~dg~~~v~G~~~l~dl~e~lg~~~~l~~~~~~~~dTlgGlil~~lg~iP~~Gd~v~~~g~~f~   95 (113)
T 3ded_A           16 NLYFQGHDGEEDEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEWNGFSFE   95 (113)
T ss_dssp             -----------CCEEECTTSCEEEETTCBHHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHHCSSCCTTCEEEETTEEEE
T ss_pred             CcCcCCCCCCCCceEEecCCEEEEecccCHHHHHHHhCCCccCCcccCCCCccHHHHHHHHhCCCCCCCCEEEECCEEEE
Confidence            357 774  56678899999999999999999999999852255321357999999999999999999999999999999


Q ss_pred             EEEeecCeeeEEEEEe
Q psy2372         428 VIDMNNNKIERLLVTI  443 (447)
Q Consensus       428 v~~~~~~ri~~v~v~~  443 (447)
                      |.+++++||.+|+|++
T Consensus        96 V~~~d~~RI~~V~v~~  111 (113)
T 3ded_A           96 VVDMDRTRVDKILVQR  111 (113)
T ss_dssp             EEEEETTEEEEEEEEE
T ss_pred             EEEEeCCeEEEEEEEE
Confidence            9999999999999987

>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0

Probab=99.84  E-value=1.8e-20  Score=148.78  Aligned_cols=81  Identities=23%  Similarity=0.495  Sum_probs=75.7

Q ss_pred             ceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEE
Q psy2372         360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERL  439 (447)
Q Consensus       360 ~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v  439 (447)
                      .+.+.++|+|+++|+++++|+++.||++  +|+   ++|+|+|||+++++|++|++||+++++||+|+|.+++++||.+|
T Consensus         2 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~--l~~---~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~~~rI~~v   76 (83)
T 3llb_A            2 YIKPLPSGDFIVKALTPVDAFNDFFGSE--FSD---EEFDTVGGLVMSAFGHLPKRNEVVELGEFRFRVLNADSRRVHLL   76 (83)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHHCCC--CCT---TTCSBHHHHHHHHHSSCCCTTCEEEETTEEEEEEEECSSCEEEE
T ss_pred             ceEEeCCCEEEEEccCCHHHHHHHhCCC--CCC---CCCcCHHHHHHHHhCcCCCCCCEEEECCEEEEEEEeeCCEEEEE
Confidence            4678899999999999999999999999  873   47999999999999999999999999999999999999999999


Q ss_pred             EEEecC
Q psy2372         440 LVTILN  445 (447)
Q Consensus       440 ~v~~~~  445 (447)
                      ++++.+
T Consensus        77 ~v~~~~   82 (83)
T 3llb_A           77 RLSPLQ   82 (83)
T ss_dssp             EEEEC-
T ss_pred             EEEECC
Confidence            998865

>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*

Probab=99.84  E-value=2.2e-20  Score=147.66  Aligned_cols=80  Identities=20%  Similarity=0.338  Sum_probs=75.4

Q ss_pred             ceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEE
Q psy2372         360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERL  439 (447)
Q Consensus       360 ~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v  439 (447)
                      .+.+.++|+|+++|+++++|+++.||++  +|+   ++|+|+|||+++++|++|++||+++++||+|+|.+++++||.+|
T Consensus         2 ~i~~~~dg~~~v~g~~~l~dl~~~l~~~--l~~---~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~~~rI~~v   76 (81)
T 3lae_A            2 NAIQQSDGSMIIDGSANLRDLNKMFNWE--LDT---EDARTFNGLILEHLEEIPDEGTICEIDGLLITILEVGDNMIKQA   76 (81)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHHCCC--CCC---SSCSBHHHHHHHHCSSCCCTTCEEEETTEEEEEEEEETTEEEEE
T ss_pred             CcEEeCCCEEEEEeeCCHHHHHHHhCCC--CCC---CCCccHHHHHHHHhCCCCCCCCEEEECCEEEEEEEeeCCEEEEE
Confidence            4678899999999999999999999999  873   47999999999999999999999999999999999999999999


Q ss_pred             EEEec
Q psy2372         440 LVTIL  444 (447)
Q Consensus       440 ~v~~~  444 (447)
                      +++++
T Consensus        77 ~v~~~   81 (81)
T 3lae_A           77 KVVKL   81 (81)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99874

>2oai_A Hemolysin; PFAM03471, xylella fastidiosa temecula1, structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; HET: MLY; 1.80A {Xylella fastidiosa} SCOP: d.145.1.4 PDB: 2r8d_A*

Probab=99.83  E-value=2.3e-20  Score=151.69  Aligned_cols=86  Identities=33%  Similarity=0.702  Sum_probs=74.3

Q ss_pred             cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCee
Q psy2372         357 YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKI  436 (447)
Q Consensus       357 ~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri  436 (447)
                      +++.+.+.++|+|+++|+++++|+++.||++  +|++++++|+|||||+++++|++|++|+++.++||+|+|.+++++||
T Consensus         8 e~~~i~~~~dg~~~v~G~~~l~dl~~~l~~~--l~~~~~~~~dTlgG~i~~~lg~iP~~Gd~v~~~~~~f~V~~~d~~rI   85 (94)
T 2oai_A            8 EDALMVTREDGSFLIDGTLPIEELREVLGAE--LPDGEENNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDGARI   85 (94)
T ss_dssp             CCCSEEECTTSCEEEETTCBHHHHHHHHTC---------CCCSBHHHHHHHHHSSCCCTTCEEEETTEEEEEEEEETTEE
T ss_pred             ccCCeEEeCCCeEEEeccCCHHHHHHHhCCC--CCcccCCCCccHHHHHHHHhCCCCCCCCEEEECCEEEEEEEEcCCEE
Confidence            3456888899999999999999999999999  88411157999999999999999999999999999999999999999


Q ss_pred             eEEEEEec
Q psy2372         437 ERLLVTIL  444 (447)
Q Consensus       437 ~~v~v~~~  444 (447)
                      .+|++++.
T Consensus        86 ~~V~v~~~   93 (94)
T 2oai_A           86 DXLLLQRL   93 (94)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99999875

>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4

Probab=99.83  E-value=2.1e-20  Score=150.85  Aligned_cols=84  Identities=21%  Similarity=0.447  Sum_probs=77.2

Q ss_pred             ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeee
Q psy2372         358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIE  437 (447)
Q Consensus       358 ~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~  437 (447)
                      .+.+.+.++|+|+++|+++++|+++.||++  +|++ +++|+|||||+++++|++|++|+++.++||+|+|.+++++||.
T Consensus         6 ~~~i~~~~dg~~~v~G~~~l~dl~~~l~~~--l~~~-~~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~f~V~~~d~~rI~   82 (90)
T 2p13_A            6 KVVAEQQADGTWLMDGWISIRKASNLLEHD--LVDE-AERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHNIG   82 (90)
T ss_dssp             CCSEEECTTSCEEEETTSBHHHHHHHHTSC--CCCT-TCCCCBHHHHHHHHHSSCCCTTCEEEETTEEEEECCBCSSSBC
T ss_pred             cCceEEeCCCEEEEECcCCHHHHHHHHCCC--CCCc-CCCCccHHHHHHHHhCCCCCCCCEEEECCEEEEEEEEeCCEEE
Confidence            346788899999999999999999999999  8841 1579999999999999999999999999999999999999999


Q ss_pred             EEEEEec
Q psy2372         438 RLLVTIL  444 (447)
Q Consensus       438 ~v~v~~~  444 (447)
                      +|++++.
T Consensus        83 ~v~v~~~   89 (90)
T 2p13_A           83 KVRVHRT   89 (90)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999875

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.82  E-value=5.3e-20  Score=178.86  Aligned_cols=156  Identities=14%  Similarity=0.222  Sum_probs=137.1

Q ss_pred             CCCHHHHHHHHHhchhc---------CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhC---
Q psy2372         190 LITEEEIYKLFREGFDI---------GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDS---  257 (447)
Q Consensus       190 ~~s~~el~~lv~~~~~~---------g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~---  257 (447)
                      .++.++...+++...++         |.++..++..+.+++++.+.+|+++|+|  +++++++++++.++++.|+++   
T Consensus        90 ~l~~d~~~~ll~~l~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~  167 (278)
T 2yvy_A           90 ELSLDDLADALQAVRKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPD  167 (278)
T ss_dssp             HSCHHHHHHHHHHHHHHCHHHHHHHHHHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTT
T ss_pred             cCCHHHHHHHHHhCCCccHHHHHHHHHcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCC
Confidence            46788888888877766         7899999999999999999999999995  778999999999999999987   


Q ss_pred             --CCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCC
Q psy2372         258 --SYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYG  334 (447)
Q Consensus       258 --~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G  334 (447)
                        +++++||+|++ ++++|+|+.+|++...   ..   .+++++| +++++|++++++.++++.|++++.+.+||+|++|
T Consensus       168 ~~~~~~~~Vvd~~-~~lvGivt~~dll~~~---~~---~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g  240 (278)
T 2yvy_A          168 AETIYYIYVVDEK-GRLKGVLSLRDLIVAD---PR---TRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEG  240 (278)
T ss_dssp             CSCSSEEEEECTT-CBEEEEEEHHHHHHSC---TT---CBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTS
T ss_pred             ccceeEEEEECCC-CCEEEEEEHHHHhcCC---CC---CcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCC
Confidence              78999999865 8999999999998642   22   6799999 6788999999999999999999999999999999


Q ss_pred             CEEEEEeHHHHHHHHhcccc
Q psy2372         335 ELEGIITINDIIHSLIGDIS  354 (447)
Q Consensus       335 ~~iGiVT~~DIle~i~gei~  354 (447)
                      +++|+||.+|+++.+.++..
T Consensus       241 ~lvGivT~~Dil~~i~~e~~  260 (278)
T 2yvy_A          241 RLVGIVTVDDVLDVLEAEAT  260 (278)
T ss_dssp             BEEEEEEHHHHHHHC-----
T ss_pred             eEEEEEEHHHHHHHHHHHhH
Confidence            99999999999999988763

>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4

Probab=99.82  E-value=4.6e-20  Score=149.75  Aligned_cols=83  Identities=24%  Similarity=0.466  Sum_probs=76.4

Q ss_pred             ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEE--cCEEEEEEEeecCe
Q psy2372         358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIW--KNIKIEVIDMNNNK  435 (447)
Q Consensus       358 ~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~--~~~~f~v~~~~~~r  435 (447)
                      .+.+.+.++|+|+++|+++++|+|+.||++  +|.   ++|+|||||+++++|++|++|+++.+  +||+|+|.+++++|
T Consensus         7 ~~~i~~~~dg~~~v~G~~~l~dl~~~l~~~--l~~---~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~~~f~V~~~~~~r   81 (93)
T 2r2z_A            7 ENLYTQVADNEYLVQGRMLIDEFNEVFETD--LHM---SDVDTMAGYLITALGTIPDEGEKPSFEVGNIKLTAEEMEGTR   81 (93)
T ss_dssp             -CCEEEEETTEEEEETTSBHHHHHHHHTCC--CCC---TTCCBHHHHHHHHHSSCCCTTCCCEEEETTEEEEEEEEETTE
T ss_pred             ccCeEEeCCCEEEEECCCCHHHHHHHhCCC--CCC---CCcccHHHHHHHHhCCCCCCCCEEEEecCCEEEEEEEeeCCE
Confidence            345788899999999999999999999999  883   37999999999999999999999988  99999999999999


Q ss_pred             eeEEEEEecC
Q psy2372         436 IERLLVTILN  445 (447)
Q Consensus       436 i~~v~v~~~~  445 (447)
                      |.+|++++.+
T Consensus        82 I~~v~v~~~~   91 (93)
T 2r2z_A           82 LLVLRVHFYD   91 (93)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEecC
Confidence            9999998754

>2p4p_A Hypothetical protein HD1797; CORC_HLYC, PFAM: PF03471, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; HET: MLY MSE; 1.80A {Haemophilus ducreyi} SCOP: d.145.1.4

Probab=99.82  E-value=7.3e-20  Score=146.36  Aligned_cols=82  Identities=28%  Similarity=0.558  Sum_probs=75.0

Q ss_pred             eEEecCCeEEEeccCCHHHHHHHhCC-CCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEE
Q psy2372         361 IEFCEDGSWIISASMTFDRFKELLSN-QVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERL  439 (447)
Q Consensus       361 ~~~~~~~~~~v~g~~~i~~~~~~l~~-~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v  439 (447)
                      +.+.++|+|+++|+++++|+++.||+ +  +|+  +++|+|+|||+++++|++|++||+++++||+|+|.+++++||.+|
T Consensus         3 i~~~~dg~~~v~G~~~l~dl~~~l~~~~--l~~--~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~~~rI~~v   78 (86)
T 2p4p_A            3 AMRRNEDSWLIDGATPLEDVMRALNIHT--FPR--DENYETIGGFMMYMLRXIPXXTDFVLYDXYXFEIIDTENFRIDQL   78 (86)
T ss_dssp             CCCCCCSEEEEETTSBHHHHHHHTTCCC--SCC--SCSSCBHHHHHHHHHCSCCCTTCEEEETTEEEEEEEEETTEEEEE
T ss_pred             eEEeCCCEEEEEccCCHHHHHHHhCCCC--CCc--CCCCccHHHHHHHHhCCCCCCCcEEEEeeEEEEEEEccCCEEEEE
Confidence            44568999999999999999999999 6  763  347999999999999999999999999999999999999999999


Q ss_pred             EEEecCC
Q psy2372         440 LVTILND  446 (447)
Q Consensus       440 ~v~~~~~  446 (447)
                      ++++.++
T Consensus        79 ~v~~~~~   85 (86)
T 2p4p_A           79 MVSFRXD   85 (86)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9998764

>2o3g_A Putative protein; APC85631.1, neisseria meningitid structural genomics, PSI-2, protein structure initiative; 2.55A {Neisseria meningitidis} SCOP: d.145.1.4

Probab=99.80  E-value=1.7e-19  Score=146.09  Aligned_cols=84  Identities=21%  Similarity=0.383  Sum_probs=69.0

Q ss_pred             ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeee
Q psy2372         358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIE  437 (447)
Q Consensus       358 ~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~  437 (447)
                      .+.+.+.++|+|+++|+++++|+++.||++ ++|.  +++|+|||||+++++|++|++|+++.++||+|+|.+++++||.
T Consensus         8 ~~~i~~~~dg~~~v~G~~~l~dl~~~l~~~-~l~~--~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~~~rI~   84 (92)
T 2o3g_A            8 EPAVQGNPDESLTVEGALEYVELAPQLNLP-QQEE--DADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIE   84 (92)
T ss_dssp             ---------CCSEEETTCBHHHHTTTTTCC-CCCT--TCSCSBHHHHHHHHHTSCCCTTCEEEETTEEEEEEEEETTEEE
T ss_pred             CcceEEcCCCEEEEEccCCHHHHHHHhCCC-CCCc--CCCcccHHHHHHHHhCCCCCCCCEEEECCEEEEEEEeeCCEEE
Confidence            345777899999999999999999999984 1442  3479999999999999999999999999999999999999999


Q ss_pred             EEEEEec
Q psy2372         438 RLLVTIL  444 (447)
Q Consensus       438 ~v~v~~~  444 (447)
                      +|++++.
T Consensus        85 ~V~v~~~   91 (92)
T 2o3g_A           85 RVKITKL   91 (92)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999875

>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4

Probab=99.80  E-value=4.1e-19  Score=142.29  Aligned_cols=79  Identities=23%  Similarity=0.440  Sum_probs=73.8

Q ss_pred             eEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCc--EEEEcC----EEEEEEEeecC
Q psy2372         361 IEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE--NFIWKN----IKIEVIDMNNN  434 (447)
Q Consensus       361 ~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~--~~~~~~----~~f~v~~~~~~  434 (447)
                      +.+.++|+|+++|+++++|+++.||++  +|+   ++|+|+|||+++++|++|++||  ++.++|    |+|+|.+++++
T Consensus         2 i~~~~dg~~~v~G~~~l~dl~~~l~~~--l~~---~~~dTl~G~v~~~lg~iP~~Gd~~~v~~~~~~~~~~f~V~~~~~~   76 (87)
T 2rk5_A            2 SREIADNTYIVLGTMTLNDFNEYFETD--LES---DNVDTIAGFYLTGVGTIPSQEEKEHFEVESNGKHLELINDKVKDG   76 (87)
T ss_dssp             EEEEETTEEEEETTSBHHHHHHHHTCC--CCC---TTCCBHHHHHHHHHCSCCCSSSCCEEEEEETTEEEEEEEEEEETT
T ss_pred             eEEeCCCEEEEEccCCHHHHHHHhCCC--CCC---CCcccHHHHHHHHhCcCCCCCCcEEEEECCceEEEEEEEEEEeCC
Confidence            567899999999999999999999999  883   3799999999999999999999  999999    99999999999


Q ss_pred             eeeEEEEEec
Q psy2372         435 KIERLLVTIL  444 (447)
Q Consensus       435 ri~~v~v~~~  444 (447)
                      ||.+|++++.
T Consensus        77 rI~~v~v~~~   86 (87)
T 2rk5_A           77 RVTKLKILVS   86 (87)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEeC
Confidence            9999999753

>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, CBS DOM protein, structural genomics, PSI-2 structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4

Probab=99.79  E-value=5e-19  Score=141.48  Aligned_cols=84  Identities=32%  Similarity=0.665  Sum_probs=74.4

Q ss_pred             ceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEE
Q psy2372         360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERL  439 (447)
Q Consensus       360 ~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v  439 (447)
                      .+.+.++|+|+++|+++++|+++.||++ ++|+++.++|+|+|||+++++|++|++||+++++||+|+|.+++++||.+|
T Consensus         2 ~i~~~~dg~~~v~G~~~l~dl~~~l~~~-~l~~~~~~~~~Tl~G~i~~~lg~iP~~Gd~v~~~~~~f~V~~~~~~rI~~v   80 (86)
T 2pls_A            2 NAVQREDGSWLLDGLIAVPELKDTLGLR-AVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENWRLEVIDMDSKRIDKV   80 (86)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHHTCS-CCTTTTSCSCCBHHHHHHHHHTSCCCTTCEEEETTEEEEEEEEETTEEEEE
T ss_pred             ceEEeCCCeEEEEcccCHHHHHHHhCCC-cCCCccCCCcccHHHHHHHHhCCCCCCCCEEEECCEEEEEEEeeCCEEEEE
Confidence            4667899999999999999999999984 155311157999999999999999999999999999999999999999999


Q ss_pred             EEEec
Q psy2372         440 LVTIL  444 (447)
Q Consensus       440 ~v~~~  444 (447)
                      ++++.
T Consensus        81 ~v~~~   85 (86)
T 2pls_A           81 LATKI   85 (86)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99875

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.79  E-value=2.8e-19  Score=160.62  Aligned_cols=134  Identities=16%  Similarity=0.256  Sum_probs=112.8

Q ss_pred             HHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC---
Q psy2372         213 EYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR---  289 (447)
Q Consensus       213 E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~---  289 (447)
                      +++.+.+.  +++.+|+|+|+  ++++++++++|+.+|++.|.+++++.+||+|++ |+++|+++.+|+++......   
T Consensus         7 ~~~~~~~~--l~~~~V~diM~--~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-g~lvGiit~~Dll~~~~~~~~~~   81 (170)
T 4esy_A            7 RRRAIARA--IRQVPIRDILT--SPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-GHLVGIITESDFLRGSIPFWIYE   81 (170)
T ss_dssp             HHHHHHHH--HHTSBGGGGCC--SCCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-SCEEEEEEGGGGGGGTCCTTHHH
T ss_pred             HHHHHHHH--HcCCCHHHhcC--CCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-ccEEEEEEHHHHHHHHhhccccc
Confidence            34445443  45789999998  478899999999999999999999999999865 89999999999987542110   


Q ss_pred             -------------------CccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         290 -------------------SIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       290 -------------------~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                                         .....+++++| ++++++++++++.+|++.|.+++.+.+||+|+ |+++|+||..||++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGivt~~Dil~~l  160 (170)
T 4esy_A           82 ASEILSRAIPAPEVEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD-GVPVGIVTRRDLLKLL  160 (170)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHTTTS
T ss_pred             hhhhhhhccchhhHHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHHHHH
Confidence                               01125789999 56789999999999999999999999999985 9999999999999998


Q ss_pred             hcc
Q psy2372         350 IGD  352 (447)
Q Consensus       350 ~ge  352 (447)
                      +.+
T Consensus       161 ~~~  163 (170)
T 4esy_A          161 LLE  163 (170)
T ss_dssp             CCC
T ss_pred             Hhc
Confidence            775

>2nqw_A CBS domain protein; PFAM03471, hemolysins, CBS domains, transporter associated D CORC_HLYC, structural genomics, PSI-2; 1.30A {Porphyromonas gingivalis} SCOP: d.145.1.4

Probab=99.78  E-value=6.9e-19  Score=142.75  Aligned_cols=85  Identities=13%  Similarity=0.312  Sum_probs=73.4

Q ss_pred             ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcC--CCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCe
Q psy2372         358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKI--SRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNK  435 (447)
Q Consensus       358 ~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~--~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~r  435 (447)
                      .+.+.+.++|+|+++|+++++|+++.||++  -..++  .++|+|||||+++++|++|++|+++.++||+|+|.+++++|
T Consensus         6 ~~~i~~~~dg~~~v~G~~~l~dl~~~l~~~--~~~~~~~~~~~~TlgG~i~~~lg~iP~~Gd~v~~~~~~f~V~~~d~~r   83 (93)
T 2nqw_A            6 ELPFKVLGDGSYLFEGKTSLSDVRHYLDLP--ENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPFRFQVTQMDKRR   83 (93)
T ss_dssp             -CCEEECTTSCEEEETTCBHHHHHHHHTCC--TTTTHHHHTTCSBHHHHHHHHHCSCCCTTCEEEETTEEEEEEEECSSS
T ss_pred             cCCeEEeCCCEEEEEcccCHHHHHHHhCCC--cccccccCCCcccHHHHHHHHhCcCCCCCCEEEECCEEEEEEEeeCCE
Confidence            346788899999999999999999999973  10000  04799999999999999999999999999999999999999


Q ss_pred             eeEEEEEec
Q psy2372         436 IERLLVTIL  444 (447)
Q Consensus       436 i~~v~v~~~  444 (447)
                      |.+|++++.
T Consensus        84 I~~V~v~~~   92 (93)
T 2nqw_A           84 IIEIKIFPF   92 (93)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEEEC
Confidence            999999754

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.76  E-value=3.5e-18  Score=166.82  Aligned_cols=138  Identities=16%  Similarity=0.221  Sum_probs=125.6

Q ss_pred             CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhC-----CCcEEEEEeCCCCeEEEEEEhhhH
Q psy2372         207 GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDS-----SYNYFPVYKKSISKIIGTLNTKTL  281 (447)
Q Consensus       207 g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~-----~~s~iPV~~~~~~~ivGiv~~~DL  281 (447)
                      +.++.+|+..+.+++.+.+.+|+++|++  +++++++++++.++++.|+++     +++++||+|++ ++++|+|+.+|+
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~~dl  194 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDL  194 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEHHHH
Confidence            4688889999999999999999999985  778999999999999999987     88999999865 899999999999


Q ss_pred             HHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         282 FKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       282 l~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      +...   ..   .++.++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+.++.
T Consensus       195 l~~~---~~---~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~e~  261 (286)
T 2oux_A          195 IVND---DD---TLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDDEA  261 (286)
T ss_dssp             TTSC---TT---SBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             HcCC---CC---CcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            8752   22   6799999 67889999999999999999999999999999999999999999999998765

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.76  E-value=1.5e-18  Score=151.95  Aligned_cols=129  Identities=20%  Similarity=0.306  Sum_probs=112.8

Q ss_pred             ccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-----CccCCCh
Q psy2372         222 KLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-----SIVNIDI  296 (447)
Q Consensus       222 ~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-----~~~~~~v  296 (447)
                      .+.+++|+++|+|+.++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++......     .....++
T Consensus        11 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v   89 (150)
T 3lqn_A           11 EFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-YKLHGLISTAMILDGILGLERIEFERLEEMKV   89 (150)
T ss_dssp             HHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBG
T ss_pred             hhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-CCEEEEEEHHHHHHHHHhhcccchhHHhcCCH
Confidence            46678999999998788899999999999999999999999999865 89999999999998774211     1123679


Q ss_pred             hhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         297 TSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       297 ~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      .++|+ ++.++++++++.++++.|.+++.  +||+|++|+++|+||..|+++.+.+.+
T Consensus        90 ~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~~~  145 (150)
T 3lqn_A           90 EQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNKKV  145 (150)
T ss_dssp             GGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             HHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHHHh
Confidence            99995 67899999999999999998875  999999999999999999999988765

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.76  E-value=2.2e-18  Score=153.78  Aligned_cols=134  Identities=18%  Similarity=0.247  Sum_probs=116.9

Q ss_pred             hhhcccCceeeceeeeeC-CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCC
Q psy2372         218 SRALKLDDQCAITLMTPR-MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNID  295 (447)
Q Consensus       218 ~~~l~l~~~~V~dvM~pr-~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~  295 (447)
                      .....+..++|+++|+|+ .++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++.+..+. .....+
T Consensus        16 ~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   94 (165)
T 3fhm_A           16 NLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-GVVLGIFTERDLVKAVAGQGAASLQQS   94 (165)
T ss_dssp             CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHGGGGGTSB
T ss_pred             hhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHhcCCccccCC
Confidence            344567889999999975 567899999999999999999999999999855 89999999999998765432 122367


Q ss_pred             hhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         296 ITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       296 v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      +.++| +++.++++++++.++++.|.+++.+.+||+|+ |+++|+||..|+++.+.++.
T Consensus        95 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~~~  152 (165)
T 3fhm_A           95 VSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIGEI  152 (165)
T ss_dssp             GGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTCC-
T ss_pred             HHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHH
Confidence            99999 56789999999999999999999999999999 99999999999999998876

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.76  E-value=3.6e-18  Score=149.08  Aligned_cols=129  Identities=16%  Similarity=0.237  Sum_probs=109.9

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC-------------CC
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN-------------RS  290 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~-------------~~  290 (447)
                      ...+|+++|+|+.+++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++....+             ..
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~   81 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-WKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSK   81 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHTTCC----CCHHHHHHHTC---
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-CeEEEEEEHHHHHHhhcccCcccchHHHHHHHHH
Confidence            457899999987788899999999999999999999999999865 8999999999998643211             01


Q ss_pred             ccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         291 IVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       291 ~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ....++.++|+ +++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.+..
T Consensus        82 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~~~  145 (152)
T 4gqw_A           82 TNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQIK  145 (152)
T ss_dssp             --CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC--
T ss_pred             hccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHhcc
Confidence            11267999995 5789999999999999999999999999999999999999999999998754

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.76  E-value=3.9e-18  Score=150.31  Aligned_cols=134  Identities=14%  Similarity=0.239  Sum_probs=110.7

Q ss_pred             HhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-----Cc
Q psy2372         217 ASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-----SI  291 (447)
Q Consensus       217 i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-----~~  291 (447)
                      .++...+.+.+|+++|+|+.++.++++++++.++++.|.+++++++||+|++ ++++|+++.+|+++......     ..
T Consensus         2 ~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~   80 (157)
T 2emq_A            2 TWEHNEFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-YKLHGLISMTMMMDAILGLERIEFERL   80 (157)
T ss_dssp             --------CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-CCEEEEEEHHHHHHHSBCSSSBCGGGG
T ss_pred             chhHhhHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-CCEEEEeeHHHHHHHHhcccccchHHh
Confidence            3455667889999999987788899999999999999999999999999864 89999999999998764311     11


Q ss_pred             cCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         292 VNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       292 ~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ...++.++| +++.++++++++.++++.|.+++.  +||+|++|+++|+||..|+++.+.+..
T Consensus        81 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~~~  141 (157)
T 2emq_A           81 ETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNKQL  141 (157)
T ss_dssp             GTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHHTT
T ss_pred             cCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHHHh
Confidence            236799999 567899999999999999999876  999999999999999999999998765

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.75  E-value=1.1e-17  Score=144.20  Aligned_cols=128  Identities=12%  Similarity=0.203  Sum_probs=111.3

Q ss_pred             cccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH-HhHhCCCccCCChhhh
Q psy2372         221 LKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK-KIISNRSIVNIDITSA  299 (447)
Q Consensus       221 l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~-~~~~~~~~~~~~v~~i  299 (447)
                      +.+.+.+|+++|++  ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++ ...++. ....++.++
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~   77 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGL-PYDIPVERI   77 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCC-CTTSBGGGT
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHhcCC-cccCCHHHH
Confidence            35778999999984  67799999999999999999999999999854 89999999999984 333221 223679999


Q ss_pred             c-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         300 I-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       300 m-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      | +++.++++++++.++++.|.+++.+.+ |+|++|+++|+||..|+++.+.+++
T Consensus        78 m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~Giit~~dil~~~~~~~  131 (138)
T 2yzi_A           78 MTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIVGIFTLSDLLEASRRRL  131 (138)
T ss_dssp             CBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEEEEEEHHHHHHHHHCCS
T ss_pred             hhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEEEEEEHHHHHHHHHHHH
Confidence            9 567899999999999999999999999 9998899999999999999998765

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.75  E-value=5.3e-18  Score=142.88  Aligned_cols=119  Identities=16%  Similarity=0.226  Sum_probs=107.2

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~  304 (447)
                      ++|+++|++  ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++....+.    .++.++| +++.
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt~~dl~~~~~~~~----~~v~~~~~~~~~   73 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEH-GKLVGIITSWDIAKALAQNK----KTIEEIMTRNVI   73 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-SBEEEEECHHHHHHHHHTTC----CBGGGTSBSSCC
T ss_pred             CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-CCEEEEEEHHHHHHHHHhcc----cCHHHHhcCCCe
Confidence            368999985  56789999999999999999999999999855 89999999999999876543    4799999 5678


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.+
T Consensus        74 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           74 TAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             CEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             EECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999998765

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.75  E-value=6.2e-18  Score=167.56  Aligned_cols=145  Identities=12%  Similarity=0.166  Sum_probs=122.6

Q ss_pred             ccchHHHHHHhhhccc-CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372         208 IFNKIEYNLASRALKL-DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII  286 (447)
Q Consensus       208 ~l~~~E~~~i~~~l~l-~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~  286 (447)
                      -++++|+++++++.++ ++.+|+|+|+|+.++++++.++|+.++++.|.+++++++||++++.++++|+++.+|++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~   82 (334)
T 2qrd_G            3 DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK   82 (334)
T ss_dssp             SHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHH
Confidence            3567889999999985 459999999999999999999999999999999999999999976689999999999998653


Q ss_pred             hCC----Ccc------CCChhhh--------cCCC--eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCC-----EEEEEe
Q psy2372         287 SNR----SIV------NIDITSA--------IQPP--LFIPETISTMQLLETFKKNKSELSLVIDEYGE-----LEGIIT  341 (447)
Q Consensus       287 ~~~----~~~------~~~v~~i--------m~~~--~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~-----~iGiVT  341 (447)
                      ...    ...      ..++..+        ++++  .++++++++.++++.|++++.+.+||+|++|+     ++|+||
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~~~~Givt  162 (334)
T 2qrd_G           83 YYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLT  162 (334)
T ss_dssp             HHHHHCSCGGGGGGGGSCBHHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEEEETTTTEEEEEEEEE
T ss_pred             HHhhccCCccHHHHHhhhchhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEeCCCCcCccceEEEee
Confidence            110    000      1344444        4667  89999999999999999999999999998865     999999


Q ss_pred             HHHHHHHHhcc
Q psy2372         342 INDIIHSLIGD  352 (447)
Q Consensus       342 ~~DIle~i~ge  352 (447)
                      .+|+++.+.++
T Consensus       163 ~~dl~~~~~~~  173 (334)
T 2qrd_G          163 QYRILKFISMN  173 (334)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999988653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.74  E-value=8.7e-18  Score=144.42  Aligned_cols=123  Identities=15%  Similarity=0.299  Sum_probs=107.5

Q ss_pred             eeceeeeeC-CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH-hCCCccCCChhhhc-CCC
Q psy2372         227 CAITLMTPR-MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII-SNRSIVNIDITSAI-QPP  303 (447)
Q Consensus       227 ~V~dvM~pr-~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~-~~~~~~~~~v~~im-~~~  303 (447)
                      +|+++|+|+ +++.++++++++.++++.|.+++++.+||+| + ++++|+++.+|+++... ++......++.++| +++
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~   84 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQV   84 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCC
Confidence            799999976 6788999999999999999999999999998 4 89999999999996433 22222237899999 567


Q ss_pred             eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      .++++++++.++++.|.+++.+.+||+| +|+++|+||.+|+++.+.++
T Consensus        85 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~~  132 (135)
T 2rc3_A           85 AYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAISQ  132 (135)
T ss_dssp             CCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC-
T ss_pred             eEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHhc
Confidence            8999999999999999999999999999 69999999999999998764

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.74  E-value=2.1e-17  Score=141.50  Aligned_cols=126  Identities=17%  Similarity=0.258  Sum_probs=111.5

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-C
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-Q  301 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~  301 (447)
                      +++.+|+++|++  ++.++++++++.++++.|.+++++.+||+| + ++++|+++.+|+++...++.. ...+++++| +
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~Givt~~dl~~~~~~~~~-~~~~v~~~~~~   75 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-NKPVGIITERDIVKAIGKGKS-LETKAEEFMTA   75 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCC-TTCBGGGTSEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEcHHHHHHHHhcCCC-cccCHHHHcCC
Confidence            457899999986  567899999999999999999999999999 4 899999999999987765321 236799999 5


Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.+..
T Consensus        76 ~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~~  127 (133)
T 2ef7_A           76 SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDMF  127 (133)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHC
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHH
Confidence            7889999999999999999999999999998999999999999999987643

>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transpor protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4

Probab=99.74  E-value=1.5e-18  Score=142.26  Aligned_cols=81  Identities=21%  Similarity=0.400  Sum_probs=75.3

Q ss_pred             cceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecC----
Q psy2372         359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNN----  434 (447)
Q Consensus       359 ~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~----  434 (447)
                      +.+.+.++|+|+++|+++++|+++.||++  +|+   ++|+|+|||+++++|++|++||+++++ |+|+|.+++++    
T Consensus         4 ~~i~~~~dg~~~v~G~~~l~dl~~~lg~~--l~~---e~~dTlgGli~~~lg~iP~~Gd~v~~~-~~f~V~~~d~~~~~r   77 (101)
T 2p3h_A            4 EDITETSPDKWLIDGDTPLDEVERAIGYE--LPE---GDYETISGLLFDHANALLKTGDVIEIP-LDFEPEDYLNNTSPT   77 (101)
T ss_dssp             CCEEEEETTEEEEETTCBHHHHHHHHTSC--CCC---SSCCBHHHHHHHHHCSCCCTTCEEEEE-CCCCGGGGTTCSSCC
T ss_pred             CceEEeCCCEEEEEccCCHHHHHHHhCCC--CCC---CCCccHHHHHHHHhCCCCCCCCEEEEe-EEEEEEEEeCCCCcC
Confidence            34778899999999999999999999999  873   479999999999999999999999999 99999999999    


Q ss_pred             -eeeEEEEEecC
Q psy2372         435 -KIERLLVTILN  445 (447)
Q Consensus       435 -ri~~v~v~~~~  445 (447)
                       ||.+|++++.+
T Consensus        78 ~rI~~V~v~~~~   89 (101)
T 2p3h_A           78 QRILRITVLEVE   89 (101)
T ss_dssp             CCEEEEEEEEEE
T ss_pred             CEEEEEEEEECC
Confidence             99999998764

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.74  E-value=6.3e-18  Score=148.17  Aligned_cols=120  Identities=13%  Similarity=0.243  Sum_probs=107.4

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~  304 (447)
                      ++|+++|+|+.++.++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++.+.++......++.++| +++.
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~  106 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-MNIIGIFTDGDLRRVFDTGVDMRDASIADVMTRGGI  106 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-CBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEESCC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-CcEEEEecHHHHHHHHhcCCCcccCcHHHHcCCCCe
Confidence            5899999987688899999999999999999999999999855 8999999999999887654332347899999 5678


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      ++++++++.++++.|.+++.+.+||+|+. +++|+||.+|+++
T Consensus       107 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~Giit~~dil~  148 (149)
T 3k2v_A          107 RIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             EECTTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEHHHHTC
T ss_pred             EECCCCCHHHHHHHHHHcCCCEEEEecCC-EEEEEEEHHHhhc
Confidence            99999999999999999999999999975 9999999999875

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.73  E-value=8.5e-18  Score=151.25  Aligned_cols=128  Identities=15%  Similarity=0.239  Sum_probs=110.2

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC---------------
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR---------------  289 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~---------------  289 (447)
                      .++|+++|+|+.+++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++......               
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-WTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDST   81 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHTCC-------------------C
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-CeEEEEEEHHHHHhhhhhccccCCcccccccccch
Confidence            36799999987788899999999999999999999999999865 89999999999985321000               


Q ss_pred             ------------CccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         290 ------------SIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       290 ------------~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                                  .....+++++|+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+....
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~~~  158 (180)
T 3sl7_A           82 WKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQIK  158 (180)
T ss_dssp             CCSHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHHHh
Confidence                        011267999995 5789999999999999999999999999999999999999999999998754

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.73  E-value=2.9e-17  Score=142.33  Aligned_cols=121  Identities=9%  Similarity=0.167  Sum_probs=107.4

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCC--eEEEEEEhhhHHHHhHhCCCccCCChhhhc-CC
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSIS--KIIGTLNTKTLFKKIISNRSIVNIDITSAI-QP  302 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~--~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~  302 (447)
                      .+|+++|++  ++.++++++++.++++.|.+++++++||+|++ +  +++|+++.+|+++...++.. ...++.++| ++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~~~Givt~~dl~~~~~~~~~-~~~~v~~~m~~~   80 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARD-NPKRPVAVVSERDILRAVAQRLD-LDGPAMPIANSP   80 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-EEEEEEEEEEHHHHHHHHHTTCC-TTSBSGGGCBCC
T ss_pred             eEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-CcceeEEEEEHHHHHHHHhcCCC-CCCCHHHHcCCC
Confidence            579999984  67899999999999999999999999999864 5  89999999999987755321 236799999 56


Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      +.+++++ ++.++++.|.+++.+.+||+|++|+++|+||.+|+++++.+
T Consensus        81 ~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  128 (141)
T 2rih_A           81 ITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFERAI  128 (141)
T ss_dssp             CEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCHHH
T ss_pred             CeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcEEEEEEHHHHHHHHHH
Confidence            7899999 99999999999999999999999999999999999987764

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.73  E-value=4.6e-18  Score=167.71  Aligned_cols=180  Identities=12%  Similarity=0.085  Sum_probs=139.8

Q ss_pred             hcCccchHHHHHHhhhccc-CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHH
Q psy2372         205 DIGIFNKIEYNLASRALKL-DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFK  283 (447)
Q Consensus       205 ~~g~l~~~E~~~i~~~l~l-~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~  283 (447)
                      +.|.++++|+++++++++| .+.++.|+|+|+.++++++.++|+.+|++.|.+++++++||+|++.++++|+++.+|++.
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~~a~~~m~~~~~~~~pV~d~~~~~lvGilt~~Dl~~   87 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFIN   87 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHTTCSCEEEEETTTTEEEEEECHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHHHHHHHHHHcCCceEEEEeCCCCeEEEEEEHHHHHH
Confidence            4466888999999999998 999999999999999999999999999999999999999999977679999999999998


Q ss_pred             HhHh---CCCc-------cCCChhhhc-------CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCC-----EEEEEe
Q psy2372         284 KIIS---NRSI-------VNIDITSAI-------QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGE-----LEGIIT  341 (447)
Q Consensus       284 ~~~~---~~~~-------~~~~v~~im-------~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~-----~iGiVT  341 (447)
                      .+..   ....       ....+.+++       +++.++++++++.++++.|.+++.+.+||+|++|+     ++|+||
T Consensus        88 ~l~~~~~~~~~~~~l~~~~~~~v~~i~~~~~~~~~~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt  167 (323)
T 3t4n_C           88 VIQYYFSNPDKFELVDKLQLDGLKDIERALGVDQLDTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLT  167 (323)
T ss_dssp             HHHHHHHCGGGGGGGGGCBHHHHHHHHHHTTC----CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEE
T ss_pred             HHHHHHcCcchhHHHHHHHHHHHHHHHHHhCCCCCCceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEec
Confidence            6521   0000       001233433       56789999999999999999999999999999876     999999


Q ss_pred             HHHHHHHHhccc-ccc-cccceEE----ecCCeEEEeccCCHHHHHHHh
Q psy2372         342 INDIIHSLIGDI-SNS-YQEEIEF----CEDGSWIISASMTFDRFKELL  384 (447)
Q Consensus       342 ~~DIle~i~gei-~e~-~~~~~~~----~~~~~~~v~g~~~i~~~~~~l  384 (447)
                      .+|+++.+.+.. ... ....+..    ...+.+.++...++.++.+.+
T Consensus       168 ~~di~~~l~~~~~~~~~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m  216 (323)
T 3t4n_C          168 QYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQML  216 (323)
T ss_dssp             HHHHHHHHHHHCGGGGGCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHH
T ss_pred             HHHHHHHHHhcCCchhhhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHH
Confidence            999999887654 211 1111111    124455677777777765544

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.73  E-value=1.3e-17  Score=142.18  Aligned_cols=123  Identities=13%  Similarity=0.146  Sum_probs=108.4

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CC
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QP  302 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~  302 (447)
                      .+.+++++|++  ++.++++++++.++++.|.+++++.+||+|+  ++++|+++.+|+++...++.. ...+++++| ++
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~--~~~~Givt~~dl~~~~~~~~~-~~~~v~~~m~~~   77 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG--ERYLGMVHLSRLLEGRKGWPT-VKEKLGEELLET   77 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHTTCSSSCC-TTCBCCGGGCBC
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC--CEEEEEEEHHHHHHHHhhCCc-ccCcHHHHccCC
Confidence            46789999985  5678999999999999999999999999985  899999999999987654322 125688999 46


Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      +.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+..
T Consensus        78 ~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           78 VRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             CcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            7899999999999999999999999999999999999999999998754

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.73  E-value=3.3e-17  Score=145.23  Aligned_cols=125  Identities=12%  Similarity=0.190  Sum_probs=110.4

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-  301 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-  301 (447)
                      +.+++|+++|++  . +++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++....+......++.++|+ 
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~   89 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRD-AVLVGVLSRKDLLRASIGQQELTSVPVHIIMTR   89 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CcEEEEEeHHHHHHHhhccCcccCcCHHHHHcC
Confidence            567899999984  3 489999999999999999999999999855 89999999999999775433323468999995 


Q ss_pred             --CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCC---CEEEEEeHHHHHHHHhc
Q psy2372         302 --PPLFIPETISTMQLLETFKKNKSELSLVIDEYG---ELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 --~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G---~~iGiVT~~DIle~i~g  351 (447)
                        ++.++++++++.++++.|.+++.+.+||+|++|   +++|+||..|+++.+..
T Consensus        90 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           90 MPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             TTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             CCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence              678999999999999999999999999999988   99999999999999875

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.73  E-value=2.8e-17  Score=138.85  Aligned_cols=121  Identities=18%  Similarity=0.257  Sum_probs=106.4

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~  304 (447)
                      ++|+++|++  ++.++++++++.++++.|.+++++.+||+| + ++++|+++.+|+++...++......++.++|. ++.
T Consensus         1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~~~~   76 (125)
T 1pbj_A            1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLV   76 (125)
T ss_dssp             -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGG
T ss_pred             CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-CeeEEEEeHHHHHHHHhcCCcccccCHHHHcCCCCe
Confidence            368899985  677899999999999999999999999998 4 89999999999998776543222368999994 678


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++++++++.++++.|.+++.+.+||+|+ |+++|+||..|+++.+.+
T Consensus        77 ~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           77 TISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             EECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             EECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            9999999999999999999999999998 999999999999998865

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.72  E-value=3e-17  Score=141.29  Aligned_cols=127  Identities=21%  Similarity=0.304  Sum_probs=109.7

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhH-HHHhHhCCCccCCChhhhcC
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTL-FKKIISNRSIVNIDITSAIQ  301 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DL-l~~~~~~~~~~~~~v~~im~  301 (447)
                      +.+.+|+++|++  ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+ ++.+..+. ....+++++|.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~   80 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-NKVIGIVTTTDIGYNLIRDKY-TLETTIGDVMT   80 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-CBEEEEEEHHHHHHHHTTTCC-CSSCBHHHHSC
T ss_pred             cccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCC-CeEEEEEEHHHHHHHHHhhcc-cCCcCHHHHhC
Confidence            567899999985  66789999999999999999999999999865 899999999999 87665432 12367999995


Q ss_pred             -CCeeeCCCCCHHHHHHHHHHcC-----CceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         302 -PPLFIPETISTMQLLETFKKNK-----SELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       302 -~~~~V~~~~~l~~al~~m~~~~-----~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                       ++.++++++++.++++.|.+++     .+.+||+|++|+++|+||..|+++.+.++|
T Consensus        81 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~~i  138 (138)
T 2p9m_A           81 KDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISKII  138 (138)
T ss_dssp             SSCCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHHC-
T ss_pred             CCcEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHhhC
Confidence             6789999999999999999999     999999998899999999999999887643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.72  E-value=1e-17  Score=143.43  Aligned_cols=126  Identities=15%  Similarity=0.237  Sum_probs=106.4

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHH-HHhHhCCCccCCChhhhc-
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF-KKIISNRSIVNIDITSAI-  300 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl-~~~~~~~~~~~~~v~~im-  300 (447)
                      +.-.+|+++|++  ++.++++++++.++++.|.+++++++||+|++ ++++|+++.+|++ +....+......++.++| 
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   81 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELAR   81 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHT
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-CeEEEEEeHHHHHHHHHhcCCCccccCHHHHhc
Confidence            344689999985  66789999999999999999999999999855 8999999999999 455443322236799999 


Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      +++.++++++++.++++.|.+++.+.+||+|+ |+++|+||.+|+++.+.++
T Consensus        82 ~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l~~~  132 (133)
T 1y5h_A           82 DSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHLPEH  132 (133)
T ss_dssp             TCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTCC--
T ss_pred             CCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence            56789999999999999999999999999998 9999999999999987653

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.72  E-value=1.7e-17  Score=146.86  Aligned_cols=129  Identities=19%  Similarity=0.249  Sum_probs=112.4

Q ss_pred             ccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC-----ccCCCh
Q psy2372         222 KLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS-----IVNIDI  296 (447)
Q Consensus       222 ~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~-----~~~~~v  296 (447)
                      .+.+.+|+++|+|+.++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.......     ....++
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v   88 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITV   88 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBH
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-CCEEEEeEHHHHHHHhhhhcccchhhhccCCH
Confidence            56778999999987788899999999999999999999999999864 799999999999987654210     123679


Q ss_pred             hhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         297 TSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       297 ~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      .++|. ++.++++++++.++++.|.+++.  +||+|++|+++|+||..|+++.+.+.+
T Consensus        89 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~~g~~vGiit~~dil~~~~~~~  144 (159)
T 1yav_A           89 EEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVLKELNKHI  144 (159)
T ss_dssp             HHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             HHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeCCCeEEEEEEHHHHHHHHHHHH
Confidence            99995 67899999999999999998765  999998899999999999999998876

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.72  E-value=2.4e-17  Score=163.11  Aligned_cols=183  Identities=13%  Similarity=0.114  Sum_probs=132.3

Q ss_pred             HHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhh
Q psy2372         200 FREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTK  279 (447)
Q Consensus       200 v~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~  279 (447)
                      ...+.++|.+.+.+++.+++.  |++.+|+|+|+|+.++++++.++++.++++.|.+++++++||++++.++++|+++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~   88 (330)
T 2v8q_E           11 APENEHSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTIT   88 (330)
T ss_dssp             ------------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHH
T ss_pred             CCCChHhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHH
Confidence            345566677777777777776  457899999999999999999999999999999999999999997668999999999


Q ss_pred             hHHHHhHhCC--------CccCCCh-------hhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcC-CCCEEEEEeH
Q psy2372         280 TLFKKIISNR--------SIVNIDI-------TSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDE-YGELEGIITI  342 (447)
Q Consensus       280 DLl~~~~~~~--------~~~~~~v-------~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe-~G~~iGiVT~  342 (447)
                      |++..+....        ......+       +++| +++.++++++++.++++.|++++.+.+||+|+ +|+++|+||.
T Consensus        89 Dll~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~  168 (330)
T 2v8q_E           89 DFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTH  168 (330)
T ss_dssp             HHHHHHHHHHHHHTTTCCCGGGCBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECH
T ss_pred             HHHHHHHHHHhccccchhHHhhccHHHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeCCCCcEEEEEcH
Confidence            9997653210        0001223       2445 56789999999999999999999999999998 8999999999


Q ss_pred             HHHHHHHhccc-ccc-c---ccceEE---e-cCCeEEEeccCCHHHHHHHh
Q psy2372         343 NDIIHSLIGDI-SNS-Y---QEEIEF---C-EDGSWIISASMTFDRFKELL  384 (447)
Q Consensus       343 ~DIle~i~gei-~e~-~---~~~~~~---~-~~~~~~v~g~~~i~~~~~~l  384 (447)
                      +|+++.+.+.. +.. .   ...+..   . ..+.+.++...++.++.+.+
T Consensus       169 ~dl~~~~~~~~~~~~~~~~~~~~v~~~~v~~~~~~~~v~~~~~l~~~~~~m  219 (330)
T 2v8q_E          169 KRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTPVYVALGIF  219 (330)
T ss_dssp             HHHHHHHHHHSCSSSCCGGGGSBHHHHTCSBCSSCCCEETTCBHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCchhhhcCCHHHhcccCcCCceEECCCCCHHHHHHHH
Confidence            99999886543 211 0   000000   0 14556788888888876554

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.72  E-value=5.9e-17  Score=143.19  Aligned_cols=128  Identities=18%  Similarity=0.259  Sum_probs=111.6

Q ss_pred             ccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcE-EEEEeCCCCeEEEEEEhhhHHHHhHhC------------
Q psy2372         222 KLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNY-FPVYKKSISKIIGTLNTKTLFKKIISN------------  288 (447)
Q Consensus       222 ~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~-iPV~~~~~~~ivGiv~~~DLl~~~~~~------------  288 (447)
                      .+...+|+++|++  ++.++++++++.++++.|.+++++. +||+|++  +++|+++.+|+++.....            
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~--~~vGivt~~dl~~~~~~~~~~~~~~~~~~~   87 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN--KLVGMIPVMHLLKVSGFHFFGFIPKEELIR   87 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT--EEEEEEEHHHHHHHHHHHHHCCCC------
T ss_pred             hhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC--EEEEEEEHHHHHHHHhhhHHhhhccHHHHH
Confidence            4677899999985  7889999999999999999999999 9999854  999999999999875310            


Q ss_pred             ---CCccCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         289 ---RSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       289 ---~~~~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                         ......++.++|.+++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.+++
T Consensus        88 ~~~~~~~~~~v~~im~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~~~  155 (157)
T 1o50_A           88 SSMKRLIAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKGR  155 (157)
T ss_dssp             -CCCCCSSCBHHHHCBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHSC
T ss_pred             HHHHHHcCCcHHHHcCCCeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHHhh
Confidence               11123679999966889999999999999999999999999998899999999999999987654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.71  E-value=5.4e-17  Score=143.19  Aligned_cols=125  Identities=15%  Similarity=0.266  Sum_probs=110.7

Q ss_pred             eeeceeeeeC----CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChhhhc
Q psy2372         226 QCAITLMTPR----MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDITSAI  300 (447)
Q Consensus       226 ~~V~dvM~pr----~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~~im  300 (447)
                      .+|+++|+|+    +++.++++++++.++++.|.+++++.+||.+  .++++|+++.+|+++.+.... .....+++++|
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~--~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m   84 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD--GDDIAGIVTERDYARKVVLQERSSKATRVEEIM   84 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES--SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHS
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee--CCEEEEEEEHHHHHHHHHhccCCccccCHHHHc
Confidence            4799999987    6788999999999999999999999999954  489999999999998765432 11237899999


Q ss_pred             C-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         301 Q-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       301 ~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      . ++.++++++++.++++.|.+++.+.+||+| +|+++|+||..|+++.+.++.
T Consensus        85 ~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~~  137 (157)
T 4fry_A           85 TAKVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIADQ  137 (157)
T ss_dssp             BSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTC
T ss_pred             CCCCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            4 678999999999999999999999999999 699999999999999999876

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.70  E-value=1.2e-16  Score=138.23  Aligned_cols=126  Identities=10%  Similarity=0.189  Sum_probs=106.8

Q ss_pred             cCceeece---eeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChhh
Q psy2372         223 LDDQCAIT---LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDITS  298 (447)
Q Consensus       223 l~~~~V~d---vM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~~  298 (447)
                      +-+.++++   +|+  +++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++....+. .....++.+
T Consensus         5 ~~~~~v~~~~~~~~--~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~v~~   81 (144)
T 2nyc_A            5 FLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGE   81 (144)
T ss_dssp             GGGSBGGGSSCCBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHH
T ss_pred             hhhcchhhcCCCCC--CCceEECCCCcHHHHHHHHHHcCcceeeEEcCC-CcEEEEEcHHHHHHHhcccccccCCccHHH
Confidence            34567788   776  467789999999999999999999999999865 89999999999998765431 111267999


Q ss_pred             hcC-------CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         299 AIQ-------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       299 im~-------~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      +|.       ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+.+
T Consensus        82 ~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           82 ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             HHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            884       47899999999999999999999999999999999999999999999875

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.69  E-value=9.5e-17  Score=142.51  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=108.8

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC--------CCccCCC
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN--------RSIVNID  295 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~--------~~~~~~~  295 (447)
                      ...+|+++|++  +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++.....        ......+
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETP   79 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCB
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHHHhhcccccccchhcccC
Confidence            45789999985  66789999999999999999999999999854 8999999999999876421        1112367


Q ss_pred             hhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         296 ITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       296 v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      +.++|. ++.++++++++.++++.|.+++.+.+||+|+ |+++|+||..|+++.+.+.+
T Consensus        80 v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~~~  137 (160)
T 2o16_A           80 LFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINLL  137 (160)
T ss_dssp             HHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHHH
T ss_pred             HHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHHHh
Confidence            999995 5679999999999999999999999999998 99999999999999987754

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.69  E-value=1.2e-16  Score=145.14  Aligned_cols=125  Identities=17%  Similarity=0.261  Sum_probs=109.6

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh-CCCccCCChhhhcC-CC
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS-NRSIVNIDITSAIQ-PP  303 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~-~~~~~~~~v~~im~-~~  303 (447)
                      .+|+++|+  +++++++.++++.++++.|.+++++++||++++ ++++|+++.+|+++.... .......+++++|+ ++
T Consensus         9 ~~v~~im~--~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~   85 (184)
T 1pvm_A            9 MRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   85 (184)
T ss_dssp             CBGGGTSB--TTCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             cCHHHhcC--CCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence            68999998  467899999999999999999999999999855 899999999999987653 11112367999995 67


Q ss_pred             eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc-cc
Q psy2372         304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG-DI  353 (447)
Q Consensus       304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g-ei  353 (447)
                      .++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+.+ ++
T Consensus        86 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~~~~~  136 (184)
T 1pvm_A           86 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSRASI  136 (184)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCHHHH
T ss_pred             cEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHhhhH
Confidence            899999999999999999999999999999999999999999998877 44

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.68  E-value=1e-16  Score=156.13  Aligned_cols=183  Identities=13%  Similarity=0.142  Sum_probs=136.9

Q ss_pred             CCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCC
Q psy2372         190 LITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSI  269 (447)
Q Consensus       190 ~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~  269 (447)
                      .+|.+|+...+..+...       .+...+.+++.+.+++++|++  +++++++++++.++++.|.+++++++||+|++ 
T Consensus        64 ivT~~Di~~~~~~~~~~-------~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-  133 (296)
T 3ddj_A           64 LLTTRDLLSTVESYCKD-------SCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-  133 (296)
T ss_dssp             EEEHHHHHGGGTTCC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-
T ss_pred             EEeHHHHHHHhcccccc-------cccchhhHHHhcccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-
Confidence            35777777665433221       223344445567899999996  66789999999999999999999999999855 


Q ss_pred             CeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         270 SKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       270 ~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      ++++|+++.+|+++.......  ..++.++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.
T Consensus       134 ~~lvGivt~~dl~~~~~~~~~--~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~  211 (296)
T 3ddj_A          134 DKPVGIVTEREFLLLYKDLDE--IFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQ  211 (296)
T ss_dssp             SCEEEEEEHHHHGGGGGGSCC--CCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CcEEEEEeHHHHHHhhhcccc--cccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence            899999999999987654332  26899999 577899999999999999999999999999999999999999999998


Q ss_pred             Hhccc-c---cc-cccceE-EecCCeEEEeccCCHHHHHHHh
Q psy2372         349 LIGDI-S---NS-YQEEIE-FCEDGSWIISASMTFDRFKELL  384 (447)
Q Consensus       349 i~gei-~---e~-~~~~~~-~~~~~~~~v~g~~~i~~~~~~l  384 (447)
                      +.... .   +. ....+. ....+.+.++...++.++.+.+
T Consensus       212 ~~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m  253 (296)
T 3ddj_A          212 LAKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEM  253 (296)
T ss_dssp             HHHHHHHTCTHHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHH
T ss_pred             HHHHHhhcChhhhcCcCHHHHhCCCCeEECCCCcHHHHHHHH
Confidence            87432 1   10 000000 0122445667777777765543

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.68  E-value=2.5e-16  Score=139.44  Aligned_cols=132  Identities=11%  Similarity=0.141  Sum_probs=110.1

Q ss_pred             hhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeC-CCCeEEEEEEhhhHHHHhHhCCC----ccC
Q psy2372         219 RALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKK-SISKIIGTLNTKTLFKKIISNRS----IVN  293 (447)
Q Consensus       219 ~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~-~~~~ivGiv~~~DLl~~~~~~~~----~~~  293 (447)
                      +.+.+.+.+|+++|++  ++.+++.++++.++++.|.+++++.+||+|+ +.++++|+++.+|+++....+..    ...
T Consensus         6 ~~~~~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~   83 (164)
T 2pfi_A            6 RNIGSHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQ   83 (164)
T ss_dssp             ----CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCC
T ss_pred             ccccccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCccc
Confidence            3456778899999985  6778999999999999999999999999985 25899999999999987654221    012


Q ss_pred             CChhhhcCC-------CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         294 IDITSAIQP-------PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       294 ~~v~~im~~-------~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      .++.++|.+       +.++++++++.++++.|.+++.+.+||+| +|+++|+||..|+++.+.+..
T Consensus        84 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~l~Giit~~dil~~~~~~~  149 (164)
T 2pfi_A           84 QCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS-RGRAVGCVSWVEMKKAISNLT  149 (164)
T ss_dssp             CBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHHHHHH
T ss_pred             chhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEHHHHHHHHHhhh
Confidence            568888853       57999999999999999999999999999 699999999999999988754

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.68  E-value=1.3e-16  Score=144.26  Aligned_cols=130  Identities=20%  Similarity=0.333  Sum_probs=110.6

Q ss_pred             cCceeeceeeeeCCc--eEEE--cCCCCHHHHHHHHHhCCCcEEEEEe-CCCCeEEEEEEhhhHHHHhHhCC--------
Q psy2372         223 LDDQCAITLMTPRMK--VNFI--NIDDNIEKNLIKILDSSYNYFPVYK-KSISKIIGTLNTKTLFKKIISNR--------  289 (447)
Q Consensus       223 l~~~~V~dvM~pr~~--v~~v--~~~~tl~e~~~~~~~~~~s~iPV~~-~~~~~ivGiv~~~DLl~~~~~~~--------  289 (447)
                      +.+.+|+++|+|..+  ++++  ++++++.++++.|.+++++.+||++ ++.++++|+|+.+|+++......        
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~   87 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVS   87 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCT
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccc
Confidence            357899999998643  6677  9999999999999999999999993 24589999999999998764320        


Q ss_pred             ----------------CccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         290 ----------------SIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       290 ----------------~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                                      .....++.++| ++++++++++++.++++.|.+++.+.+||+| +|+++|+||..|+++.+.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A           88 TSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             TCEEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             cceeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHh
Confidence                            11225789999 6788999999999999999999999999999 79999999999999998875


Q ss_pred             c
Q psy2372         353 I  353 (447)
Q Consensus       353 i  353 (447)
                      .
T Consensus       167 ~  167 (185)
T 2j9l_A          167 A  167 (185)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.65  E-value=4.1e-16  Score=149.81  Aligned_cols=154  Identities=17%  Similarity=0.229  Sum_probs=126.7

Q ss_pred             CCCHHHHHHHHHhchhcCccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCC
Q psy2372         190 LITEEEIYKLFREGFDIGIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSI  269 (447)
Q Consensus       190 ~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~  269 (447)
                      .+|.+|+...+..+...+.+...+   ..++++..+.+++++|++  +++++++++++.++++.|.+++++++||+|++ 
T Consensus        51 ivt~~di~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-  124 (280)
T 3kh5_A           51 IITSMDIVDFMGGGSKYNLIREKH---ERNFLAAINEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDE-  124 (280)
T ss_dssp             EEEHHHHHHHTTTSGGGHHHHTTS---TTCHHHHTTSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-
T ss_pred             EEEHHHHHHHhcccchhhhhhhcc---ccchhHHhhhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-
Confidence            468899988876665555443322   233334446799999995  67799999999999999999999999999865 


Q ss_pred             CeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         270 SKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       270 ~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      ++++|+++.+|+++.+..... ...++.++| +++.++++++++.++++.|++++.+.+||+ ++|+++|+||.+|+++.
T Consensus       125 ~~~~Givt~~dl~~~~~~~~~-~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~  202 (280)
T 3kh5_A          125 NQLISLITERDVIRALLDKID-ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKL  202 (280)
T ss_dssp             CBEEEEEEHHHHHHHHGGGSC-TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHhhcCC-CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHH
Confidence            899999999999987654332 124789999 577899999999999999999999999999 67999999999999998


Q ss_pred             Hhc
Q psy2372         349 LIG  351 (447)
Q Consensus       349 i~g  351 (447)
                      +..
T Consensus       203 ~~~  205 (280)
T 3kh5_A          203 LGS  205 (280)
T ss_dssp             HTS
T ss_pred             Hhh
Confidence            864

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.65  E-value=6.6e-17  Score=169.04  Aligned_cols=148  Identities=14%  Similarity=0.193  Sum_probs=116.6

Q ss_pred             CCCCHHHHHHHHHhchhcCcc-----chHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIF-----NKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l-----~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|++++...+.....-|.+     .++|+++++++     .+++++|+  +++++++++++++|+++.|.+++++++|
T Consensus        52 dtVTe~~ma~a~a~~GGiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~--~d~v~v~~~~tv~ea~~~m~~~~~s~~P  124 (496)
T 4fxs_A           52 DTVTEARLAIALAQEGGIGFIHKNMSIEQQAAQVHQV-----KIFEAGVV--THPVTVRPEQTIADVMELTHYHGFAGFP  124 (496)
T ss_dssp             TTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHH-----HHCCC--C--BCCCCBCSSSBHHHHHHHHTSSCCCEEE
T ss_pred             chhhHHHHHHHHHHcCCcceecCCCCHHHHHHHHHhc-----cccccccc--cCceEECCCCCHHHHHHHHHHcCCcEEE
Confidence            468999999998877666777     67888999887     34678898  5778999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEE
Q psy2372         264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGII  340 (447)
Q Consensus       264 V~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiV  340 (447)
                      |+|++ ++++|+|+.+|++..  .+.   +.+++++|+   +++++++++++.++++.|++++.+.+||+|++|+++|+|
T Consensus       125 Vvd~~-~~lvGiVt~rDL~~~--~~~---~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~GiI  198 (496)
T 4fxs_A          125 VVTEN-NELVGIITGRDVRFV--TDL---TKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMI  198 (496)
T ss_dssp             EECSS-SBEEEEEEHHHHTTC--CCT---TSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCCEEE
T ss_pred             EEccC-CEEEEEEEHHHHhhc--ccC---CCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEee
Confidence            99965 899999999999742  112   268999998   689999999999999999999999999999999999999


Q ss_pred             eHHHHHHHH
Q psy2372         341 TINDIIHSL  349 (447)
Q Consensus       341 T~~DIle~i  349 (447)
                      |++|+++..
T Consensus       199 T~~DIl~~~  207 (496)
T 4fxs_A          199 TAKDFHKAE  207 (496)
T ss_dssp             CCC-----C
T ss_pred             hHhHHHHhh
Confidence            999999875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.63  E-value=1.6e-15  Score=159.08  Aligned_cols=151  Identities=17%  Similarity=0.208  Sum_probs=126.7

Q ss_pred             CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|++++...+.....-|.+.     +++.+++++++.     .++.|+  .+++++++++|+.|+++.|.+++++++|
T Consensus        76 dtvTe~~lAia~a~~GgiGvIh~~~~~~~q~~~V~~V~~-----~~~~m~--~d~v~l~~~~tv~ea~~~m~~~~~s~~p  148 (511)
T 3usb_A           76 DTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKR-----SESGVI--SDPFFLTPEHQVYDAEHLMGKYRISGVP  148 (511)
T ss_dssp             TTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHHHT-----SSSCSS--SSCCCBCTTSBHHHHHHHHHHHCCSEEE
T ss_pred             hhhcHHHHHHHHHhcCCceeecccCCHHHHHHHHHHhhc-----cccccc--cCCEEECCCCCHHHHHHHHHHcCCcEEE
Confidence            4679999988877665556665     455566777765     446676  4677899999999999999999999999


Q ss_pred             EEeCC-CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEE
Q psy2372         264 VYKKS-ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGII  340 (447)
Q Consensus       264 V~~~~-~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiV  340 (447)
                      |+|++ .++++|+|+.+|++..  ...   +.+++++|+  +++++++++++.++++.|++++.+.+||+|++|+++|+|
T Consensus       149 Vvd~g~~~~lvGiVt~rDl~~~--~~~---~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiI  223 (511)
T 3usb_A          149 VVNNLDERKLVGIITNRDMRFI--QDY---SIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLI  223 (511)
T ss_dssp             EESCTTTCBEEEEEEHHHHTTC--CCS---SSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEE
T ss_pred             EEecCCCCEEEEEEEehHhhhh--ccC---CCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeec
Confidence            99861 4899999999999762  222   278999997  788999999999999999999999999999999999999


Q ss_pred             eHHHHHHHHhc
Q psy2372         341 TINDIIHSLIG  351 (447)
Q Consensus       341 T~~DIle~i~g  351 (447)
                      |.+|+++.+..
T Consensus       224 T~~Dil~~~~~  234 (511)
T 3usb_A          224 TIKDIEKVIEF  234 (511)
T ss_dssp             EHHHHHHHHHC
T ss_pred             cHHHHHHhhhc
Confidence            99999999864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.63  E-value=6.1e-17  Score=174.47  Aligned_cols=126  Identities=16%  Similarity=0.156  Sum_probs=107.2

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHH-hCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-----------
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKIL-DSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-----------  291 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~-~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-----------  291 (447)
                      ++++|+|+|+||+++.+++++++++|+.+.|. +++++++||+|++ ++++|+|+.+|+++.+.++...           
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~  529 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-GYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTL  529 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-CBBCCEESHHHHTTTTTTC--------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-CeEEEEEEHHHHHHHHHHHhhhcccccccccce
Confidence            67899999999999999999999999999999 8999999999864 8999999999999865432100           


Q ss_pred             ------------------------------------cCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCC
Q psy2372         292 ------------------------------------VNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYG  334 (447)
Q Consensus       292 ------------------------------------~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G  334 (447)
                                                          ...+++++| +++.++++++++.++++.|++++.+.+||+ |+|
T Consensus       530 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G  608 (632)
T 3org_A          530 VLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERG  608 (632)
T ss_dssp             -----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETT
T ss_pred             eccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhcCCCEEEEE-ECC
Confidence                                                001267788 578899999999999999999999999999 789


Q ss_pred             CEEEEEeHHHHHHHHhc
Q psy2372         335 ELEGIITINDIIHSLIG  351 (447)
Q Consensus       335 ~~iGiVT~~DIle~i~g  351 (447)
                      +++|+||++|+++++.+
T Consensus       609 ~lvGIVT~~Dll~~~~~  625 (632)
T 3org_A          609 KLVGIVEREDVAYGYSN  625 (632)
T ss_dssp             EEEEEEEGGGTEECCCC
T ss_pred             EEEEEEehhhHHHHHhh
Confidence            99999999999876544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.62  E-value=1.9e-15  Score=158.19  Aligned_cols=151  Identities=13%  Similarity=0.148  Sum_probs=131.8

Q ss_pred             CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|++|+...+..+...|.+.     +++++++++++++     +++|++  +++++++++++.++++.|.+++++++|
T Consensus        53 ~~vt~~eLa~av~~~Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~p  125 (491)
T 1zfj_A           53 DTVTGSKMAIAIARAGGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVSEAEELMQRYRISGVP  125 (491)
T ss_dssp             TTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEE
T ss_pred             hhccHHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEE
Confidence            3578899999998887777776     7888889887765     679985  677899999999999999999999999


Q ss_pred             EEeC-CCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEE
Q psy2372         264 VYKK-SISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGII  340 (447)
Q Consensus       264 V~~~-~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiV  340 (447)
                      |+|+ +.++++|+|+.+|++...  +.   +.+++++|+  ++.++++++++.++++.|++++.+.+||+|++|+++|+|
T Consensus       126 Vvd~~~~~~lvGivt~~Dl~~~~--~~---~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGiv  200 (491)
T 1zfj_A          126 IVETLANRKLVGIITNRDMRFIS--DY---NAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI  200 (491)
T ss_dssp             EESCTTTCBEEEEEEHHHHHHCS--CS---SSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEE
T ss_pred             EEEeCCCCEEEEEEEHHHHhhhc--cC---CCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            9982 348999999999998642  22   268999997  678999999999999999999999999999999999999


Q ss_pred             eHHHHHHHHhc
Q psy2372         341 TINDIIHSLIG  351 (447)
Q Consensus       341 T~~DIle~i~g  351 (447)
                      |.+|+++.+..
T Consensus       201 t~~Dil~~~~~  211 (491)
T 1zfj_A          201 TIKDIEKVIEF  211 (491)
T ss_dssp             EHHHHHHHHHC
T ss_pred             EHHHHHHHHhc
Confidence            99999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.61  E-value=4.4e-15  Score=142.57  Aligned_cols=125  Identities=17%  Similarity=0.302  Sum_probs=105.9

Q ss_pred             eece-eeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC--------------c
Q psy2372         227 CAIT-LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS--------------I  291 (447)
Q Consensus       227 ~V~d-vM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~--------------~  291 (447)
                      ++.+ +|+  ++++++++++|+.+|++.|.+++++++||++++.++++|+++.+|+++.+..+..              .
T Consensus         4 ~v~~~i~~--~~~~~v~~~~sl~~a~~~m~~~~~~~lpV~d~~~~~~~Givt~~di~~~~~~~~~~~~~~~~~~~~~~~~   81 (280)
T 3kh5_A            4 RVMKIAQN--KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMGGGSKYNLIREKHERNFLAA   81 (280)
T ss_dssp             BGGGTSCC--SCCCCBCTTSBHHHHHHHHHHHCCCEEEEECTTTCBEEEEEEHHHHHHHTTTSGGGHHHHTTSTTCHHHH
T ss_pred             hHHHHhcC--CCcEEECCCCcHHHHHHHHHhCCCcEeeEEECCCCeEEEEEEHHHHHHHhcccchhhhhhhccccchhHH
Confidence            4455 455  3788999999999999999999999999998645899999999999987532110              0


Q ss_pred             cCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         292 VNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       292 ~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      .+.+++++|+ ++.++++++++.++++.|++++.+.+||+|++|+++|++|.+|+++.+.+..
T Consensus        82 ~~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~  144 (280)
T 3kh5_A           82 INEPVREIMEENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKI  144 (280)
T ss_dssp             TTSBGGGTSBCSCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGS
T ss_pred             hhhhHHHhcCCCCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcC
Confidence            1257899995 6789999999999999999999999999999999999999999999877654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.61  E-value=3.6e-15  Score=138.97  Aligned_cols=120  Identities=17%  Similarity=0.273  Sum_probs=106.5

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CC
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PP  303 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~  303 (447)
                      ..+++++|+  ++++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++...   .   .+++++|. ++
T Consensus        12 ~~~~~~~~~--~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~l~Givt~~dl~~~~~---~---~~v~~im~~~~   82 (213)
T 1vr9_A           12 HMKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDL---D---SSVFNKVSLPD   82 (213)
T ss_dssp             -CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCT---T---SBSGGGCBCTT
T ss_pred             ccCHHHhhc--CCCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-CEEEEEEEHHHHHhhcC---C---CcHHHHccCCC
Confidence            356889998  467799999999999999999999999999854 89999999999987653   1   57999995 67


Q ss_pred             eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      .++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+....
T Consensus        83 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~  132 (213)
T 1vr9_A           83 FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  132 (213)
T ss_dssp             CCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             EEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHh
Confidence            89999999999999999999999999998899999999999999887543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.61  E-value=2.7e-15  Score=147.81  Aligned_cols=128  Identities=11%  Similarity=0.191  Sum_probs=111.7

Q ss_pred             ccCceeecee---eeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChh
Q psy2372         222 KLDDQCAITL---MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDIT  297 (447)
Q Consensus       222 ~l~~~~V~dv---M~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~  297 (447)
                      .+.+.+++++   |+  +++.++++++++.++.+.|.+++++++||+|++ |+++|+++.+|+++.+..+. .....++.
T Consensus       183 ~~~~~~v~~~~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~  259 (323)
T 3t4n_C          183 HFLKIPIGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVG  259 (323)
T ss_dssp             GGCCSBGGGTTCSBC--TTCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEETTHHHHHHHTTHHHHTTSBHH
T ss_pred             hhhhCcHHHcCCCCC--CCcEEECCCCcHHHHHHHHHHcCCCEEEEECCC-CeEEEEEeHHHHHHHHhhchhhhccCCHH
Confidence            3456689999   76  467799999999999999999999999999864 89999999999998775432 11136799


Q ss_pred             hhcC-------CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         298 SAIQ-------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       298 ~im~-------~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      ++|+       ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.++++
T Consensus       260 ~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~l~Giit~~Dil~~l~~~  321 (323)
T 3t4n_C          260 EALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLG  321 (323)
T ss_dssp             HHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEECTTSBEEEEEEHHHHHHHHHHC
T ss_pred             HHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            9995       478999999999999999999999999999999999999999999999875

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.60  E-value=1.7e-15  Score=145.90  Aligned_cols=149  Identities=17%  Similarity=0.149  Sum_probs=105.2

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC-Ce
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP-PL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~-~~  304 (447)
                      ++|+++|++  +++++++++++.++++.|.+++++++||+|+ .|+++|+++.+|+++...+      .+++++|.+ +.
T Consensus         1 m~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~-~~~~~Giv~~~dl~~~~~~------~~v~~~m~~~~~   71 (282)
T 2yzq_A            1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNK-EGKLVGIISVKRILVNPDE------EQLAMLVKRDVP   71 (282)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECT-TCCEEEEEESSCC----------------CCCBSCCC
T ss_pred             CchHHhccC--CCeEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEHHHHHhhhcc------CCHHHHcCCCCc
Confidence            468899984  6778999999999999999999999999986 4899999999999876532      578999964 78


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH-HHhcc-c-ccccccceEEecCCeEEEeccCCHHHHH
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH-SLIGD-I-SNSYQEEIEFCEDGSWIISASMTFDRFK  381 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle-~i~ge-i-~e~~~~~~~~~~~~~~~v~g~~~i~~~~  381 (447)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++ .+.++ . .+..-..+.  ..+.+.+++..++.++.
T Consensus        72 ~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~~m--~~~~~~v~~~~~l~~~~  149 (282)
T 2yzq_A           72 VVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKSEKYKGVEIEPYY--QRYVSIVWEGTPLKAAL  149 (282)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCSGGGGCBSTTTS--BSCCCCEETTSBHHHHH
T ss_pred             EECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhccCCcccCcHHHHh--CCCCEEECCCCCHHHHH
Confidence            9999999999999999999999999999899999999999999 66543 2 111111111  35567899999999988


Q ss_pred             HHhC
Q psy2372         382 ELLS  385 (447)
Q Consensus       382 ~~l~  385 (447)
                      +.+.
T Consensus       150 ~~~~  153 (282)
T 2yzq_A          150 KALL  153 (282)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.59  E-value=1.5e-16  Score=166.47  Aligned_cols=167  Identities=20%  Similarity=0.305  Sum_probs=39.7

Q ss_pred             CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|++|+...+..+...|.+.     +++++++++++++++     .|+  .+++++++++++.++++.|.+++++++|
T Consensus        56 ~~vt~~ela~ava~~GglG~i~~~~~~e~~~~~I~~v~~~~~-----~m~--~~~~~v~~~~tv~ea~~~~~~~~~~~~p  128 (486)
T 2cu0_A           56 DTVTEWEMAVAMAREGGLGVIHRNMGIEEQVEQVKRVKRAER-----LIV--EDVITIAPDETVDFALFLMEKHGIDGLP  128 (486)
T ss_dssp             TTTCSHHHHHHHHHTTCEEEECSSSCHHHHHHHHHHHHTCC---------------------------------------
T ss_pred             eeecHHHHHHHHHhcCCceeecCCCCHHHHHHHHHhhcchhh-----ccc--cCceEECCCCCHHHHHHHHHHcCCcEEE
Confidence            3578899998887766556665     577899999888654     687  5788999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeH
Q psy2372         264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITI  342 (447)
Q Consensus       264 V~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~  342 (447)
                      |+++  ++++|+|+.+|++.   + ..   .+++++|+ ++.++++++++.++++.|++++.+.+||+|++|+++|+||.
T Consensus       129 Vvd~--~~lvGivt~~Dl~~---~-~~---~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~  199 (486)
T 2cu0_A          129 VVED--EKVVGIITKKDIAA---R-EG---KLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITM  199 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEC--CEEEEEEEHHHhcc---C-CC---CCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEH
Confidence            9985  89999999999986   1 22   67999996 67899999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccccccccceEEecCCeEEEeccCCHH
Q psy2372         343 NDIIHSLIGDISNSYQEEIEFCEDGSWIISASMTFD  378 (447)
Q Consensus       343 ~DIle~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~  378 (447)
                      +|+++.+-.       +...+..++.|++.|.++++
T Consensus       200 ~Dil~~~~~-------~~~~~~~~g~~~v~~~~~~~  228 (486)
T 2cu0_A          200 SDLVARKKY-------KNAVRDENGELLVAAAVSPF  228 (486)
T ss_dssp             -------CC-------TTCCBCTTSCBCCEEEECTT
T ss_pred             HHHHHhhhc-------cccccccCCceeecceechh
Confidence            999998521       11223356778888888763

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.59  E-value=3.8e-15  Score=144.89  Aligned_cols=128  Identities=16%  Similarity=0.212  Sum_probs=111.5

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC------CccCCCh
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR------SIVNIDI  296 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~------~~~~~~v  296 (447)
                      ..+.+++++|++  ++.++++++++.++++.|.+++++++||+|++ ++++|+++.+|+++.+.+..      .....++
T Consensus       153 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v  229 (296)
T 3ddj_A          153 DEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVV  229 (296)
T ss_dssp             CCCCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBH
T ss_pred             cccccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCH
Confidence            345689999984  66789999999999999999999999999855 89999999999998765210      0012679


Q ss_pred             hhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         297 TSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       297 ~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      .++|. ++.++++++++.++++.|.+++.+.+||+|++|+++|+||+.|+++.+.++.
T Consensus       230 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Giit~~Dil~~l~~~~  287 (296)
T 3ddj_A          230 KDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  287 (296)
T ss_dssp             HHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             HHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEcHHHHHHHHHHHh
Confidence            99995 6789999999999999999999999999999999999999999999998876

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.58  E-value=5.2e-15  Score=140.48  Aligned_cols=122  Identities=13%  Similarity=0.148  Sum_probs=100.6

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC--------------
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS--------------  290 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~--------------  290 (447)
                      ..+|+++|++  ++.++++++++.+|++.|.+++++.+||+|++ |+++|+++.+|+++.......              
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v   82 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-NHLLGMLSTSNITATYMDIWDSNILAKSATSLDNI   82 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-CBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence            4689999984  56799999999999999999999999999865 899999999999987642110              


Q ss_pred             --------------------------------------------------------------------------------
Q psy2372         291 --------------------------------------------------------------------------------  290 (447)
Q Consensus       291 --------------------------------------------------------------------------------  290 (447)
                                                                                                      
T Consensus        83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~  162 (245)
T 3l2b_A           83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKK  162 (245)
T ss_dssp             HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------ccCCChhhhcC--CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         291 -------------------IVNIDITSAIQ--PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       291 -------------------~~~~~v~~im~--~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                                         ....+++++|.  ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++..
T Consensus       163 ~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          163 NNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             HTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             cCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence                               00245788895  678999999999999999999999999999999999999999998753

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.57  E-value=1.3e-14  Score=138.63  Aligned_cols=127  Identities=17%  Similarity=0.255  Sum_probs=104.3

Q ss_pred             ccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC-CCeEEEEEEhhhHHHHhHhC----CC------
Q psy2372         222 KLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS-ISKIIGTLNTKTLFKKIISN----RS------  290 (447)
Q Consensus       222 ~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~-~~~ivGiv~~~DLl~~~~~~----~~------  290 (447)
                      ...+++|+|+|+  ++++++.+++++.++.++|.+++++.+||+|++ .++++|+|+.+||++++...    ..      
T Consensus         9 ~~~~~~v~diMt--~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~   86 (250)
T 2d4z_A            9 NKYNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAA   86 (250)
T ss_dssp             CCSSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCC
T ss_pred             ccCCCChHHhcC--CCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhh
Confidence            356789999998  478899999999999999999999999999864 36899999999999764321    00      


Q ss_pred             -------------------c------------------------------------------------------------
Q psy2372         291 -------------------I------------------------------------------------------------  291 (447)
Q Consensus       291 -------------------~------------------------------------------------------------  291 (447)
                                         .                                                            
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (250)
T 2d4z_A           87 EADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASR  166 (250)
T ss_dssp             CBCCC---------------------------------------------------------------------------
T ss_pred             cccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcc
Confidence                               0                                                            


Q ss_pred             -----------------cCCCh--hh-hc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         292 -----------------VNIDI--TS-AI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       292 -----------------~~~~v--~~-im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                                       ...++  ++ +| ..|++|.+++++.++..+|++.+.+.++|++ .|+++||||+.|+++++.
T Consensus       167 ~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          167 FEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             cccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence                             00111  22 35 4578899999999999999999999999997 599999999999999987


Q ss_pred             c
Q psy2372         351 G  351 (447)
Q Consensus       351 g  351 (447)
                      |
T Consensus       246 ~  246 (250)
T 2d4z_A          246 G  246 (250)
T ss_dssp             C
T ss_pred             H
Confidence            6

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.56  E-value=5.2e-16  Score=162.83  Aligned_cols=153  Identities=10%  Similarity=0.087  Sum_probs=24.7

Q ss_pred             CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeecee-eeeCCceEEEcCCCCHHHHHHHHHhCCCcEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITL-MTPRMKVNFINIDDNIEKNLIKILDSSYNYF  262 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dv-M~pr~~v~~v~~~~tl~e~~~~~~~~~~s~i  262 (447)
                      ..++++++...+......|.+.     +++++++.++...      ++ |+|  +++++++++|+.|+++.|.+++++++
T Consensus        60 ~~vt~~~la~~la~~gg~G~I~~~~~~e~~~~~v~~V~~~------e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~  131 (503)
T 1me8_A           60 QSVSGEKMAIALAREGGISFIFGSQSIESQAAMVHAVKNF------KAGFVV--SDSNVKPDQTFADVLAISQRTTHNTV  131 (503)
T ss_dssp             TTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTT------TC--------------------------------
T ss_pred             hhhhHHHHHHHHHhCCCcceeeCCCCHHHHHHHHhhhhhc------ccCccc--CCeEECCCCcHHHHHHHHHHcCceEE
Confidence            3578899988887655444443     4667777766543      44 885  78899999999999999999999999


Q ss_pred             EEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEE
Q psy2372         263 PVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEYGELE  337 (447)
Q Consensus       263 PV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~i  337 (447)
                      ||+|++  .++++|+|+.+|+++. ....   +.+++++|++   +.++++++++.++++.|++++.+.+||+|++|+++
T Consensus       132 pVvd~~~~~g~lvGiVt~~Dl~~~-~~~~---~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lv  207 (503)
T 1me8_A          132 AVTDDGTPHGVLLGLVTQRDYPID-LTQT---ETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLR  207 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCcCCeEEEEEEHHHHHhh-hccc---cCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEE
Confidence            999853  3799999999999864 1112   2679999975   88999999999999999999999999999999999


Q ss_pred             EEEeHHHHHHHHhccc
Q psy2372         338 GIITINDIIHSLIGDI  353 (447)
Q Consensus       338 GiVT~~DIle~i~gei  353 (447)
                      |+||.+|+++.+.+..
T Consensus       208 GiIT~~Dil~~~~~~~  223 (503)
T 1me8_A          208 YIVFRKDYDRSQVCHN  223 (503)
T ss_dssp             --------------CC
T ss_pred             EEEEecHHHHhhhccc
Confidence            9999999999987654

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.56  E-value=6.2e-15  Score=155.68  Aligned_cols=126  Identities=14%  Similarity=0.166  Sum_probs=108.8

Q ss_pred             cCceeeceeeeeCCceEEEcCC-CCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-
Q psy2372         223 LDDQCAITLMTPRMKVNFINID-DNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-  300 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~-~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-  300 (447)
                      +.+.+|+++|++  ++++++++ +++.++++.|.+++++++||+|++.++++|+|+.+|+++.+..+......++.++| 
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~  458 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALN  458 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhc
Confidence            557899999984  67789999 99999999999999999999983348999999999999887654333347899999 


Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcC----CCCEEEEEeHHHHHHHHhcc
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDE----YGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe----~G~~iGiVT~~DIle~i~ge  352 (447)
                      ++++++++++++.++++.|.+++  ++||+|+    +|+++||||++||++.+...
T Consensus       459 ~~~~~v~~~~~l~~a~~~m~~~~--~~pVVd~~~~~~g~lvGIVT~~Dll~~l~~~  512 (527)
T 3pc3_A          459 KRVIRLNESEILGKLARVLEVDP--SVLILGKNPAGKVELKALATKLDVTTFIAAG  512 (527)
T ss_dssp             TTCCEEETTSBHHHHHHHHTTCS--EEEEEEECSSSCEEEEEEEEHHHHHHHHHTC
T ss_pred             CCCeEECCCCcHHHHHHHHhhCC--EEEEEeCCcccCCeEEEEEEHHHHHHHHHhc
Confidence            67889999999999999997654  5799998    49999999999999999764

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.54  E-value=3.9e-14  Score=140.10  Aligned_cols=127  Identities=13%  Similarity=0.182  Sum_probs=110.1

Q ss_pred             Cceeece---eeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChhhh
Q psy2372         224 DDQCAIT---LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDITSA  299 (447)
Q Consensus       224 ~~~~V~d---vM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~~i  299 (447)
                      ...++++   +|+  +++.++++++++.++++.|.+++++++||+|++ ++++|+++.+|+++.+..+. .....++.++
T Consensus       180 ~~~~v~~l~~~m~--~~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~  256 (334)
T 2qrd_G          180 LRVPLNQMTIGTW--SNLATASMETKVYDVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEA  256 (334)
T ss_dssp             CCCBGGGSSCSBC--SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEETHHHHHHHTTSCGGGGGSBHHHH
T ss_pred             hhCcHHHhCCccc--CCceEECCCCcHHHHHHHHHHcCCcEEEEEcCC-CcEEEEEEHHHHHHHhhccccccccCcHHHH
Confidence            3567888   477  467789999999999999999999999999854 89999999999998775432 1123678999


Q ss_pred             cC-------CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         300 IQ-------PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       300 m~-------~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      |.       ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.++.
T Consensus       257 m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~Giit~~dil~~~~~~~  317 (334)
T 2qrd_G          257 LLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  317 (334)
T ss_dssp             HTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECTTCBEEEEEEHHHHHHHHHSCC
T ss_pred             HhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHHhcc
Confidence            96       6789999999999999999999999999999999999999999999998754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.54  E-value=9.8e-16  Score=160.02  Aligned_cols=147  Identities=19%  Similarity=0.212  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHHHhchhcCccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEE
Q psy2372         189 DLITEEEIYKLFREGFDIGIFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFP  263 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iP  263 (447)
                      ..+|++++...+.....-|.+.     +++++++.++.     +++++|+  .+++++++++|+.|+++.|.+++++++|
T Consensus        51 ~tVTe~~lA~ala~~GGiGvI~~~~~~e~~a~~v~~vk-----~~~~~m~--~~~v~v~~~~tv~ea~~~m~~~~~s~~p  123 (490)
T 4avf_A           51 DTVTEARLAIAMAQEGGIGIIHKNMGIEQQAAEVRKVK-----KHETAIV--RDPVTVTPSTKIIELLQMAREYGFSGFP  123 (490)
T ss_dssp             TTTCSHHHHHHHHHHTSEEEECCSSCHHHHHHHHHHHH-----HCCC---------------------------------
T ss_pred             hhhCHHHHHHHHHHcCCCccccCCCCHHHHHHHhhhhc-----ccccCcc--cCceEeCCCCcHHHHHHHHHHhCCCEEE
Confidence            4589999998888776667666     67777887764     4678898  4678999999999999999999999999


Q ss_pred             EEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEE
Q psy2372         264 VYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGII  340 (447)
Q Consensus       264 V~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiV  340 (447)
                      |+| + ++++|+|+.+|++...  ...   .+++++|+   ++.++++++++.++++.|++++.+.+||+|++|+++|+|
T Consensus       124 Vvd-~-g~lvGIVt~rDl~~~~--~~~---~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiI  196 (490)
T 4avf_A          124 VVE-Q-GELVGIVTGRDLRVKP--NAG---DTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLV  196 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEE-C-CEEEEEEEhHHhhhcc--ccC---CcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEE
Confidence            998 4 8999999999997432  122   67999998   689999999999999999999999999999999999999


Q ss_pred             eHHHHHHHH
Q psy2372         341 TINDIIHSL  349 (447)
Q Consensus       341 T~~DIle~i  349 (447)
                      |++|+++..
T Consensus       197 T~~Dil~~~  205 (490)
T 4avf_A          197 TFRDIEKAK  205 (490)
T ss_dssp             ---------
T ss_pred             ehHHhhhhc
Confidence            999999975

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.51  E-value=5e-14  Score=135.60  Aligned_cols=125  Identities=16%  Similarity=0.210  Sum_probs=104.6

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHH------HHhH------hC---
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF------KKII------SN---  288 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl------~~~~------~~---  288 (447)
                      .+.+++++|+  .++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|++      +...      .+   
T Consensus       124 ~~~~v~~~m~--~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~  200 (282)
T 2yzq_A          124 KGVEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEEE  200 (282)
T ss_dssp             GGCBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC--------------
T ss_pred             ccCcHHHHhC--CCCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhh
Confidence            3678999997  466789999999999999999999999999854 7999999999999      4431      00   


Q ss_pred             ---------------CCccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         289 ---------------RSIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       289 ---------------~~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                                     ......+++++| +++.++++++++.+|++.|.+++.+.+||+|+.|+++|+||..|+++.+..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~~  279 (282)
T 2yzq_A          201 WILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLVK  279 (282)
T ss_dssp             ------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGCC
T ss_pred             hhcccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHHh
Confidence                           011236789999 567899999999999999999999999999988899999999999987653

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.49  E-value=2.6e-13  Score=134.04  Aligned_cols=125  Identities=13%  Similarity=0.218  Sum_probs=106.3

Q ss_pred             eeecee--eeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-CccCCChhhhc--
Q psy2372         226 QCAITL--MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-SIVNIDITSAI--  300 (447)
Q Consensus       226 ~~V~dv--M~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-~~~~~~v~~im--  300 (447)
                      .+++++  |+ ..++.++++++++.++.+.|.+++++++||+|++ ++++|+++.+|+++....+. .....++.++|  
T Consensus       190 ~~v~~~~v~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~  267 (330)
T 2v8q_E          190 KSLEELQIGT-YANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQH  267 (330)
T ss_dssp             SBHHHHTCSB-CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGG
T ss_pred             CCHHHhcccC-cCCceEECCCCCHHHHHHHHHHcCCCeEEEECCC-CcEEEEEEHHHHHHHHhccccccccCcHHHHHhc
Confidence            345555  43 2467789999999999999999999999999854 89999999999998775431 11136788888  


Q ss_pred             -----CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         301 -----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       301 -----~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                           +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+..+
T Consensus       268 ~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~l~Giit~~Dil~~~~~~  324 (330)
T 2v8q_E          268 RSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  324 (330)
T ss_dssp             CCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             cccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcCCCcEEEEEeHHHHHHHHHhh
Confidence                 5788999999999999999999999999999999999999999999998754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.29  E-value=3.9e-13  Score=140.77  Aligned_cols=128  Identities=16%  Similarity=0.192  Sum_probs=12.6

Q ss_pred             HHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCcc
Q psy2372         213 EYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIV  292 (447)
Q Consensus       213 E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~  292 (447)
                      +++.+.++.+     ++++|++  +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++..  +.   
T Consensus        87 ~~~~v~~v~~-----~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-~~lvGivt~~Dl~~~~--~~---  153 (494)
T 1vrd_A           87 QARQVSIVKK-----TENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-GRLVGLLTNRDVRFEK--NL---  153 (494)
T ss_dssp             HHHHHHHHHT-----C----------------------------------------------------------------
T ss_pred             HHHHHHhhhh-----HhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-CEEEEEEEHHHHHhhc--CC---
Confidence            3455555544     5778984  77899999999999999999999999999854 7999999999998632  12   


Q ss_pred             CCChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         293 NIDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       293 ~~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      +.++.++|+   ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+..+.
T Consensus       154 ~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~~~  217 (494)
T 1vrd_A          154 SKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEHPN  217 (494)
T ss_dssp             -------------------------------------------------------CHHHHTCTT
T ss_pred             CCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcccc
Confidence            267999996   6789999999999999999999999999999999999999999999987653

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.17  E-value=4e-12  Score=130.86  Aligned_cols=146  Identities=14%  Similarity=0.206  Sum_probs=19.9

Q ss_pred             CCCCHHHHHHHHHhchhcC--ccc-----hHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcE
Q psy2372         189 DLITEEEIYKLFREGFDIG--IFN-----KIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNY  261 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~g--~l~-----~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~  261 (447)
                      ..+|+.++-  +..+++.|  +|.     ++|.++++++-+++.     .|.  .+.+++.++.|+.|+.+++.+++++.
T Consensus       101 DTVTe~~MA--IamAr~GGiGvIH~n~sie~Qa~~V~~VKr~e~-----g~i--~dPvtl~P~~Tv~da~~l~~~~~isg  171 (556)
T 4af0_A          101 DTVTEDRMA--IALALHGGLGIIHHNCSAEEQAAMVRRVKKYEN-----GFI--TDPLCLGPDATVGDVLEIKAKFGFCG  171 (556)
T ss_dssp             TTTCSHHHH--HHHHHTTCEEEECCSSCHHHHHHHHHHHHHCCC------------------------------------
T ss_pred             ccccCHHHH--HHHHHCCCeEEEcCCCCHHHHHHHHHHHHhccc-----Ccc--CCCeEcCCCCCHHHHHHHHHHhCCCc
Confidence            356666654  44444443  343     456678888776654     344  35678999999999999999999999


Q ss_pred             EEEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEE
Q psy2372         262 FPVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEG  338 (447)
Q Consensus       262 iPV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iG  338 (447)
                      +||+++.  .++++|||+.+|+...   +..   .+++++|+ ++++++++.++.+|.++|++++...+||||++|+++|
T Consensus       172 vpVvd~g~~~~kLvGIvT~RD~rf~---d~~---~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvG  245 (556)
T 4af0_A          172 VPITETGEPDSKLLGIVTGRDVQFQ---DAE---TPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVS  245 (556)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccCcCCEEEEEEeccccccc---ccc---eEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEE
Confidence            9999852  4799999999998752   222   68999995 5679999999999999999999999999999999999


Q ss_pred             EEeHHHHHHHH
Q psy2372         339 IITINDIIHSL  349 (447)
Q Consensus       339 iVT~~DIle~i  349 (447)
                      +||+.|+...-
T Consensus       246 lIT~kDi~k~~  256 (556)
T 4af0_A          246 LVARSDLLKNQ  256 (556)
T ss_dssp             -----------
T ss_pred             EEEechhhhhh
Confidence            99999998754

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.15  E-value=7.1e-13  Score=139.47  Aligned_cols=119  Identities=11%  Similarity=0.153  Sum_probs=69.1

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC--CCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC---
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS--ISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ---  301 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~--~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~---  301 (447)
                      +++++|++  +++++++++++.++++.|.+++++.+||+|++  .++++|+|+.+|++.......   ..+++++|+   
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~---~~~v~~vm~~~~  183 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDH---TTLLSEVMTPRI  183 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC-------------------CCB
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccC---CCCHHHHhCCCC
Confidence            57788984  56689999999999999999999999999863  489999999999987421112   267999995   


Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+||++|+++.+.
T Consensus       184 ~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          184 ELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRD  232 (514)
T ss_dssp             CCCCEETTCCSTTTTTHHHHHTCSCCCEESSSSCCC----CCCCSSCCC
T ss_pred             CCeEECCCCCHHHHHHHHHHcCCCcccEECCCCeEEEEEEHHHHHHHhh
Confidence            5889999999999999999999999999999999999999999987654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.78  E-value=2.8e-09  Score=98.84  Aligned_cols=138  Identities=13%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             CCCHHHHHHHHHhchhcCccchHHHHHHhhhcccC-------ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEE
Q psy2372         190 LITEEEIYKLFREGFDIGIFNKIEYNLASRALKLD-------DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYF  262 (447)
Q Consensus       190 ~~s~~el~~lv~~~~~~g~l~~~E~~~i~~~l~l~-------~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~i  262 (447)
                      ..|-+|...++.+....+..--++...+.+++...       +.+++++|++  ++.++++++++.++.+.|.+++++++
T Consensus        29 ~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l  106 (213)
T 1vr9_A           29 SATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYL  106 (213)
T ss_dssp             TCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEE
T ss_pred             CCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcCCCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEE
Confidence            45677888887765443321111112233333333       3469999986  56789999999999999999999999


Q ss_pred             EEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCe--eeCCCCCHHHHHHHHHHcCCceEEEEcCCCC
Q psy2372         263 PVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPL--FIPETISTMQLLETFKKNKSELSLVIDEYGE  335 (447)
Q Consensus       263 PV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~--~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~  335 (447)
                      ||+|++ ++++|+++.+|+++......     ...+.+....  +.....++.++.+.|.+++.+.++|.+.+|.
T Consensus       107 pVvd~~-g~lvGiit~~Dil~~~~~~~-----~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~~  175 (213)
T 1vr9_A          107 PVVDEE-MRLKGAVSLHDFLEALIEAL-----AMDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRSG  175 (213)
T ss_dssp             EEECTT-CBEEEEEEHHHHHHHHHHSC-----C------------------------------------------
T ss_pred             EEEcCC-CEEEEEEEHHHHHHHHHHHh-----cCCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEecC
Confidence            999864 89999999999998775422     1233332211  1133345999999999999999998865544

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.78  E-value=2e-08  Score=76.41  Aligned_cols=67  Identities=10%  Similarity=0.281  Sum_probs=54.7

Q ss_pred             eEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh-CCCccCCChhhhcC-CCeee
Q psy2372         238 VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS-NRSIVNIDITSAIQ-PPLFI  306 (447)
Q Consensus       238 v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~-~~~~~~~~v~~im~-~~~~V  306 (447)
                      ++++++++|+.||++.|.+++++.+||+|+  |+++|+++.+|+++.... +....+.+++++|+ ++.+|
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~--~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG--DEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET--TEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            578999999999999999999999999983  799999999999876543 33333468999994 55543

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.52  E-value=2.9e-07  Score=80.68  Aligned_cols=91  Identities=16%  Similarity=0.153  Sum_probs=70.4

Q ss_pred             CChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEE
Q psy2372         294 IDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWII  371 (447)
Q Consensus       294 ~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v  371 (447)
                      .+++++|+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++..+.++- ..+ .-..+.....+.+.+
T Consensus        17 ~~v~~im~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v   96 (159)
T 3fv6_A           17 LQVKDFQSIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVC   96 (159)
T ss_dssp             CBGGGSCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEETTSCCCB
T ss_pred             CCHHHHcCCCEEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcCCCCcEEE
Confidence            679999988889999999999999999999999999998899999999999999886643 221 111222222234567


Q ss_pred             eccCCHHHHHHHh
Q psy2372         372 SASMTFDRFKELL  384 (447)
Q Consensus       372 ~g~~~i~~~~~~l  384 (447)
                      +...++.++.+.+
T Consensus        97 ~~~~~l~~a~~~m  109 (159)
T 3fv6_A           97 RREDYVMDIAKHL  109 (159)
T ss_dssp             CTTSBHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            7788888876554

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.36  E-value=3.5e-07  Score=81.14  Aligned_cols=57  Identities=25%  Similarity=0.370  Sum_probs=52.6

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      .+++++| +++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++..+.
T Consensus        18 ~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~   75 (170)
T 4esy_A           18 VPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSI   75 (170)
T ss_dssp             SBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTC
T ss_pred             CCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHh
Confidence            6899999 56789999999999999999999999999999999999999999987654

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.30  E-value=1.4e-06  Score=72.21  Aligned_cols=86  Identities=22%  Similarity=0.262  Sum_probs=65.4

Q ss_pred             ChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEec
Q psy2372         295 DITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISA  373 (447)
Q Consensus       295 ~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g  373 (447)
                      +++++|+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+......-.+  +.  ..+...++.
T Consensus         2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~v~~--~~--~~~~~~v~~   77 (122)
T 3kpb_A            2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQNKKTIEE--IM--TRNVITAHE   77 (122)
T ss_dssp             BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTTCCBGGG--TS--BSSCCCEET
T ss_pred             chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhcccCHHH--Hh--cCCCeEECC
Confidence            5788995 577999999999999999999999999999999999999999999987653210000  00  123345777


Q ss_pred             cCCHHHHHHHh
Q psy2372         374 SMTFDRFKELL  384 (447)
Q Consensus       374 ~~~i~~~~~~l  384 (447)
                      ..++.+..+.+
T Consensus        78 ~~~l~~~~~~~   88 (122)
T 3kpb_A           78 DEPVDHVAIKM   88 (122)
T ss_dssp             TSBHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            78888865544

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.29  E-value=1.6e-06  Score=74.73  Aligned_cols=91  Identities=14%  Similarity=0.127  Sum_probs=69.4

Q ss_pred             CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc--cc-c-cccceEE-ec
Q psy2372         294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI--SN-S-YQEEIEF-CE  365 (447)
Q Consensus       294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei--~e-~-~~~~~~~-~~  365 (447)
                      .+++++|++   +.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+.+.-  +. . ....+.. ..
T Consensus        15 ~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~   94 (150)
T 3lqn_A           15 IFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMK   94 (150)
T ss_dssp             CBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCB
T ss_pred             CChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHHHhc
Confidence            679999963   789999999999999999999999999999999999999999999986422  11 1 1111110 12


Q ss_pred             CCeEEEeccCCHHHHHHHh
Q psy2372         366 DGSWIISASMTFDRFKELL  384 (447)
Q Consensus       366 ~~~~~v~g~~~i~~~~~~l  384 (447)
                      .....++...++.++.+.+
T Consensus        95 ~~~~~v~~~~~l~~a~~~~  113 (150)
T 3lqn_A           95 QDIPVLKLEDSFAKALEMT  113 (150)
T ss_dssp             SSCCEEETTCBHHHHHHHH
T ss_pred             CCCceeCCCCCHHHHHHHH
Confidence            3456788888888876655

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.29  E-value=3.9e-06  Score=71.18  Aligned_cols=89  Identities=16%  Similarity=0.143  Sum_probs=65.9

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc-c-ccccccceEEecCCeEE
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD-I-SNSYQEEIEFCEDGSWI  370 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge-i-~e~~~~~~~~~~~~~~~  370 (447)
                      .+++++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++...+.+ . .+..-..+.  ..+...
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m--~~~~~~   84 (138)
T 2yzi_A            7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIM--TRNLIT   84 (138)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTC--BCSCCE
T ss_pred             hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHh--hCCCeE
Confidence            6799999 5678999999999999999999999999999889999999999998655432 1 111001111  123456


Q ss_pred             EeccCCHHHHHHHh
Q psy2372         371 ISASMTFDRFKELL  384 (447)
Q Consensus       371 v~g~~~i~~~~~~l  384 (447)
                      ++...++.+..+.+
T Consensus        85 v~~~~~l~~~~~~m   98 (138)
T 2yzi_A           85 ANVNTPLGEVLRKM   98 (138)
T ss_dssp             EETTSBHHHHHHHH
T ss_pred             ECCCCcHHHHHHHH
Confidence            77777777765554

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.26  E-value=1.6e-06  Score=65.80  Aligned_cols=49  Identities=16%  Similarity=0.398  Sum_probs=45.1

Q ss_pred             CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         303 PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       303 ~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      ++++++++++.+|++.|.+++...+||+|+ |+++||+|..|++..+..+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~-~~lvGIvT~~Di~~~~~~~   50 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG-DEILGVVTERDILDKVVAK   50 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEET-TEEEEEEEHHHHHHHTTTT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHhc
Confidence            578999999999999999999999999984 9999999999999887654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.25  E-value=2.4e-06  Score=73.85  Aligned_cols=89  Identities=10%  Similarity=0.112  Sum_probs=66.5

Q ss_pred             CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccc-cc-cccceEEecCCe
Q psy2372         294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS-NS-YQEEIEFCEDGS  368 (447)
Q Consensus       294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~-e~-~~~~~~~~~~~~  368 (447)
                      .+++++|++   +.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+....+ .+ .-..+..  ...
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~--~~~  105 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMT--RGG  105 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSE--ESC
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcC--CCC
Confidence            479999964   7899999999999999999999999999998999999999999988765331 11 1011111  123


Q ss_pred             EEEeccCCHHHHHHHh
Q psy2372         369 WIISASMTFDRFKELL  384 (447)
Q Consensus       369 ~~v~g~~~i~~~~~~l  384 (447)
                      ..++...++.+..+.+
T Consensus       106 ~~v~~~~~l~~a~~~m  121 (149)
T 3k2v_A          106 IRIRPGTLAVDALNLM  121 (149)
T ss_dssp             CEECTTCBHHHHHHHH
T ss_pred             eEECCCCCHHHHHHHH
Confidence            4567777777765543

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.23  E-value=3.2e-06  Score=72.89  Aligned_cols=87  Identities=22%  Similarity=0.229  Sum_probs=68.9

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhcccccccccceEEecCCeE
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~  369 (447)
                      .+++++|+   ++.++++++++.++++.|.+++.+.+||+|++ |+++|+||..|++..+...-+.. -..+.   ....
T Consensus        23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~-v~~~m---~~~~   98 (148)
T 3lv9_A           23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENKIE-LEEIL---RDII   98 (148)
T ss_dssp             CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSCCC-GGGTC---BCCE
T ss_pred             CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCCCcc-HHHhc---CCCe
Confidence            67999995   57899999999999999999999999999988 89999999999999875432111 11111   2346


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .++...++.+..+.+
T Consensus        99 ~v~~~~~l~~~~~~m  113 (148)
T 3lv9_A           99 YISENLTIDKALERI  113 (148)
T ss_dssp             EEETTSBHHHHHHHH
T ss_pred             EECCCCCHHHHHHHH
Confidence            788899999876554

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.23  E-value=3.6e-06  Score=71.27  Aligned_cols=90  Identities=14%  Similarity=0.160  Sum_probs=67.6

Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHH-HHHHhccc-ccccccceEEecCCeEE
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDI-IHSLIGDI-SNSYQEEIEFCEDGSWI  370 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DI-le~i~gei-~e~~~~~~~~~~~~~~~  370 (447)
                      .+++++|+ ++.++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+ +..+..+. .+..-..+.  ......
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m--~~~~~~   85 (138)
T 2p9m_A            8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVM--TKDVIT   85 (138)
T ss_dssp             CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHS--CSSCCC
T ss_pred             CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHh--CCCcEE
Confidence            67899994 67899999999999999999999999999988999999999999 87665432 111000111  123355


Q ss_pred             EeccCCHHHHHHHhC
Q psy2372         371 ISASMTFDRFKELLS  385 (447)
Q Consensus       371 v~g~~~i~~~~~~l~  385 (447)
                      ++...++.++.+.+.
T Consensus        86 v~~~~~l~~~~~~~~  100 (138)
T 2p9m_A           86 IHEDASILEAIKKMD  100 (138)
T ss_dssp             EETTSBHHHHHHHHT
T ss_pred             ECCCCCHHHHHHHHH
Confidence            777788888776653

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.21  E-value=1.3e-06  Score=75.98  Aligned_cols=74  Identities=18%  Similarity=0.336  Sum_probs=57.8

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI  300 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im  300 (447)
                      ..+.+++++|++  ++.++++++++.++++.|.+++++++||+| + |+++|+++.+|+++.+..........+.+++
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-g~~~Giit~~dil~~l~~~~~~~~~~~~~~i  148 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-GKLIGLISIGDLVKSVIADQQFTISQLEHYI  148 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHTTCCCCCC------
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-CEEEEEEEHHHHHHHHHHHHHhhHHHHHhhc
Confidence            357889999985  567899999999999999999999999998 4 8999999999999988765432223444444

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.21  E-value=6.2e-06  Score=70.31  Aligned_cols=88  Identities=15%  Similarity=0.278  Sum_probs=68.1

Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCC--CEEEEEeHHHHHHHHhccc-ccccccceEEecCCeE
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYG--ELEGIITINDIIHSLIGDI-SNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G--~~iGiVT~~DIle~i~gei-~e~~~~~~~~~~~~~~  369 (447)
                      .+++++|. ++.++++++++.++++.|.+++.+.+||+|++|  +++|+||..|+++.+.... .+..-..+.  ..+..
T Consensus         5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m--~~~~~   82 (141)
T 2rih_A            5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIA--NSPIT   82 (141)
T ss_dssp             CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGC--BCCCE
T ss_pred             eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHc--CCCCe
Confidence            57899995 678999999999999999999999999999888  9999999999999876543 211111111  23456


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .++.. ++.+..+.+
T Consensus        83 ~v~~~-~l~~a~~~m   96 (141)
T 2rih_A           83 VLDTD-PVHVAAEKM   96 (141)
T ss_dssp             EETTS-BHHHHHHHH
T ss_pred             EEcCC-CHHHHHHHH
Confidence            78888 988876554

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.19  E-value=6.1e-06  Score=69.46  Aligned_cols=88  Identities=14%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccccccceEEecCCeEEE
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSYQEEIEFCEDGSWII  371 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~~~~~~~~~~~~~~v  371 (447)
                      .+++++|+ ++.++++++++.++++.|.+++.+.+||+| +|+++|+||.+|++..+.... .+..-..+..  .....+
T Consensus         4 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~--~~~~~v   80 (133)
T 2ef7_A            4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMT--ASLITI   80 (133)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSE--ECCCCE
T ss_pred             ccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCcccCHHHHcC--CCCEEE
Confidence            67899995 578999999999999999999999999999 799999999999998876543 2211111111  133567


Q ss_pred             eccCCHHHHHHHh
Q psy2372         372 SASMTFDRFKELL  384 (447)
Q Consensus       372 ~g~~~i~~~~~~l  384 (447)
                      +...++.++.+.+
T Consensus        81 ~~~~~l~~~~~~~   93 (133)
T 2ef7_A           81 REDSPITGALALM   93 (133)
T ss_dssp             ETTSBHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            7888888876554

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.19  E-value=1.9e-06  Score=75.82  Aligned_cols=58  Identities=19%  Similarity=0.260  Sum_probs=53.8

Q ss_pred             CChhhhcC----CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         294 IDITSAIQ----PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       294 ~~v~~im~----~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      .+++++|+    ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+..
T Consensus        24 ~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   85 (165)
T 3fhm_A           24 TFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAG   85 (165)
T ss_dssp             CBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHh
Confidence            67899996    48899999999999999999999999999999999999999999988765

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.18  E-value=6.2e-06  Score=72.23  Aligned_cols=91  Identities=9%  Similarity=0.130  Sum_probs=66.1

Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-c-----c-ccccceEE-e
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-S-----N-SYQEEIEF-C  364 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~-----e-~~~~~~~~-~  364 (447)
                      .+++++|+ ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++..+.... .     + .....+.. .
T Consensus         5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im   84 (160)
T 2o16_A            5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVM   84 (160)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHS
T ss_pred             CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHHh
Confidence            67899994 6789999999999999999999999999998899999999999998876421 0     0 00000000 0


Q ss_pred             cCCeEEEeccCCHHHHHHHh
Q psy2372         365 EDGSWIISASMTFDRFKELL  384 (447)
Q Consensus       365 ~~~~~~v~g~~~i~~~~~~l  384 (447)
                      ......++...++.++.+.+
T Consensus        85 ~~~~~~v~~~~~l~~a~~~m  104 (160)
T 2o16_A           85 HTDVTSVAPQAGLKESAIYM  104 (160)
T ss_dssp             CSCEEEBCTTSBHHHHHHHH
T ss_pred             cCCCeEECCCCCHHHHHHHH
Confidence            12445667777777765544

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.18  E-value=2e-06  Score=72.25  Aligned_cols=88  Identities=15%  Similarity=0.220  Sum_probs=66.9

Q ss_pred             CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhcccccccccceEEecCCeE
Q psy2372         294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~  369 (447)
                      .+++++|++   +.++++++++.++++.|++++.+.+||+|++ |+++|+||..|++..+...-.+..-..+.  . ...
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~v~~~m--~-~~~   79 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVL--R-TAV   79 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTCCCCCHHHHC--B-CCC
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccCCCCCHHHHc--C-CCe
Confidence            678999963   6799999999999999999999999999988 89999999999998765432111001111  1 135


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .++...++.+..+.+
T Consensus        80 ~v~~~~~l~~a~~~m   94 (127)
T 3nqr_A           80 VVPESKRVDRMLKEF   94 (127)
T ss_dssp             EEETTCBHHHHHHHH
T ss_pred             EECCCCcHHHHHHHH
Confidence            688888888876554

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.18  E-value=1.8e-06  Score=72.57  Aligned_cols=57  Identities=11%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      .+++++| ++++++++++++.++++.|++++.+.+||+|+ |+++|+||.+|+++.+..
T Consensus         5 ~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~   62 (128)
T 3gby_A            5 VTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKG   62 (128)
T ss_dssp             CBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSS
T ss_pred             eEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhh
Confidence            6899999 56789999999999999999999999999998 999999999999987643

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.17  E-value=3.7e-06  Score=79.03  Aligned_cols=59  Identities=10%  Similarity=0.134  Sum_probs=54.9

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      .+++++| +++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|+++.+...
T Consensus         7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~   66 (245)
T 3l2b_A            7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDI   66 (245)
T ss_dssp             CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCC
T ss_pred             CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHh
Confidence            6799999 5688999999999999999999999999999999999999999999998754

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.16  E-value=2.4e-06  Score=75.05  Aligned_cols=91  Identities=12%  Similarity=0.088  Sum_probs=65.6

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cc-c-cccceE-EecC
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SN-S-YQEEIE-FCED  366 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e-~-~~~~~~-~~~~  366 (447)
                      ..++++|.   ++.++++++++.+|++.|.+++.+.+||+|+.|+++|+||..|++..+...- +. . ....+. ....
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~   94 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT   94 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC
Confidence            35788885   4689999999999999999999999999999999999999999998876532 21 1 111110 0122


Q ss_pred             CeEEEeccCCHHHHHHHh
Q psy2372         367 GSWIISASMTFDRFKELL  384 (447)
Q Consensus       367 ~~~~v~g~~~i~~~~~~l  384 (447)
                      +...++...++.++.+.+
T Consensus        95 ~~~~v~~~~~l~~~~~~m  112 (156)
T 3k6e_A           95 DVAVVSPDFTITEVLHKL  112 (156)
T ss_dssp             SCCCBCTTCCHHHHHHHT
T ss_pred             CceecccccHHHHHHHHH
Confidence            334566677777766655

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.14  E-value=3.4e-06  Score=71.30  Aligned_cols=88  Identities=2%  Similarity=0.038  Sum_probs=67.4

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcC-CCCEEEEEeHHHHHHHHhccc-cc-ccccceEEecCC
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDE-YGELEGIITINDIIHSLIGDI-SN-SYQEEIEFCEDG  367 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe-~G~~iGiVT~~DIle~i~gei-~e-~~~~~~~~~~~~  367 (447)
                      .+++++|+   ++.++++++++.++++.|++++.+.+||+|+ .|+++|+||..|++..+...- .. ..-..+.   ..
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m---~~   78 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA---DE   78 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS---BC
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc---cC
Confidence            56899994   4789999999999999999999999999975 589999999999999876532 11 1001111   23


Q ss_pred             eEEEeccCCHHHHHHHh
Q psy2372         368 SWIISASMTFDRFKELL  384 (447)
Q Consensus       368 ~~~v~g~~~i~~~~~~l  384 (447)
                      .+.++...++.+..+.+
T Consensus        79 ~~~v~~~~~l~~~~~~m   95 (130)
T 3hf7_A           79 IYFVPEGTPLSTQLVKF   95 (130)
T ss_dssp             CCEEETTCBHHHHHHHH
T ss_pred             CeEeCCCCcHHHHHHHH
Confidence            46788889999876554

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.14  E-value=4.3e-06  Score=69.46  Aligned_cols=87  Identities=21%  Similarity=0.182  Sum_probs=63.7

Q ss_pred             ChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccc--cccccceEEecCCeEEE
Q psy2372         295 DITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDIS--NSYQEEIEFCEDGSWII  371 (447)
Q Consensus       295 ~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~--e~~~~~~~~~~~~~~~v  371 (447)
                      +++++|+ ++.++++++++.++++.|.+++.+.+||+| +|+++|+||.+|+++.+....+  +..-..+.  ......+
T Consensus         2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m--~~~~~~v   78 (125)
T 1pbj_A            2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVM--ERDLVTI   78 (125)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHC--BCGGGEE
T ss_pred             CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcCCcccccCHHHHc--CCCCeEE
Confidence            4788885 678999999999999999999999999999 7999999999999987654321  11000111  1233456


Q ss_pred             eccCCHHHHHHHh
Q psy2372         372 SASMTFDRFKELL  384 (447)
Q Consensus       372 ~g~~~i~~~~~~l  384 (447)
                      +...++.+..+.+
T Consensus        79 ~~~~~l~~~~~~~   91 (125)
T 1pbj_A           79 SPRATIKEAAEKM   91 (125)
T ss_dssp             CTTSCHHHHHHHH
T ss_pred             CCCCCHHHHHHHH
Confidence            7777777765544

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.13  E-value=8.9e-06  Score=70.49  Aligned_cols=89  Identities=12%  Similarity=0.113  Sum_probs=68.4

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-------ccccccceEE
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-------SNSYQEEIEF  363 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-------~e~~~~~~~~  363 (447)
                      .+++++|.   ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++..+...-       ....-..+. 
T Consensus        11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m-   89 (157)
T 2emq_A           11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVM-   89 (157)
T ss_dssp             CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTC-
T ss_pred             CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHHHh-
Confidence            67899996   6789999999999999999999999999998899999999999998876420       111001111 


Q ss_pred             ecCCeEEEeccCCHHHHHHHh
Q psy2372         364 CEDGSWIISASMTFDRFKELL  384 (447)
Q Consensus       364 ~~~~~~~v~g~~~i~~~~~~l  384 (447)
                       ......++...++.++.+.+
T Consensus        90 -~~~~~~v~~~~~l~~a~~~m  109 (157)
T 2emq_A           90 -NRNIPRLRLDDSLMKAVGLI  109 (157)
T ss_dssp             -BCCCCEEETTSBHHHHHHHH
T ss_pred             -CCCCceecCCCcHHHHHHHH
Confidence             23446788888888876654

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.12  E-value=4e-06  Score=71.34  Aligned_cols=88  Identities=10%  Similarity=0.160  Sum_probs=67.9

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhccc-ccccccceEEecCCe
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIGDI-SNSYQEEIEFCEDGS  368 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~gei-~e~~~~~~~~~~~~~  368 (447)
                      .+++++|+   ++.++++++++.++++.|++++.+.+||+|++ |+++|+||..|++..+...- .+..-..+.  .+ .
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m--~~-~   79 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLL--RP-A   79 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTC--BC-C
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHc--CC-C
Confidence            67899995   46899999999999999999999999999987 89999999999998876322 111111111  12 5


Q ss_pred             EEEeccCCHHHHHHHh
Q psy2372         369 WIISASMTFDRFKELL  384 (447)
Q Consensus       369 ~~v~g~~~i~~~~~~l  384 (447)
                      ..++...++.++.+.+
T Consensus        80 ~~v~~~~~l~~~~~~m   95 (136)
T 3lfr_A           80 TFVPESKRLNVLLREF   95 (136)
T ss_dssp             CEEETTCBHHHHHHHH
T ss_pred             eEECCCCcHHHHHHHH
Confidence            6788899999876554

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.12  E-value=2.9e-06  Score=71.52  Aligned_cols=86  Identities=10%  Similarity=0.101  Sum_probs=67.0

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhcccccccccceEEecCCeE
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~  369 (447)
                      .+++++|+   ++.++++++++.++++.|++++.+.+||+|++ |+++|+||..|++..+.+.  +..-..+.   ...+
T Consensus         5 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~--~~~v~~~m---~~~~   79 (129)
T 3jtf_A            5 RTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEP--ALDIRSLV---RPAV   79 (129)
T ss_dssp             CBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTCT--TSCGGGGC---BCCC
T ss_pred             CCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhccC--CcCHHHHh---CCCe
Confidence            67999996   45799999999999999999999999999986 8999999999998876431  11111111   1246


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .++...++.+..+.+
T Consensus        80 ~v~~~~~l~~~~~~m   94 (129)
T 3jtf_A           80 FIPEVKRLNVLLREF   94 (129)
T ss_dssp             EEETTCBHHHHHHHH
T ss_pred             EeCCCCcHHHHHHHH
Confidence            788889999987665

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.11  E-value=7.3e-06  Score=73.14  Aligned_cols=137  Identities=14%  Similarity=0.127  Sum_probs=92.4

Q ss_pred             EEEEEhh--hHHHHhHhCCCccCCChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHH
Q psy2372         273 IGTLNTK--TLFKKIISNRSIVNIDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDII  346 (447)
Q Consensus       273 vGiv~~~--DLl~~~~~~~~~~~~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIl  346 (447)
                      -|.+...  +++.....-..   .+++++|+   ++.++++++++.++++.|++++...+||+|++ |+++|+||..|++
T Consensus        16 ~g~l~~~e~~~i~~~l~l~~---~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~   92 (173)
T 3ocm_A           16 VPAFGVEERNMVSGVLTLAE---RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLV   92 (173)
T ss_dssp             --CCCHHHHHHHHHHHHHTT---SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHH
T ss_pred             cCCcCHHHHHHHHHHhccCC---CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHH
Confidence            3666633  34443333222   68999994   47899999999999999999999999999986 8999999999999


Q ss_pred             HHHhcccccccccceEEecCCeEEEeccCCHHHHHHHhC---CCCCCCC-cCCC---CcccHhHHHHhhcCCCCCCCcE
Q psy2372         347 HSLIGDISNSYQEEIEFCEDGSWIISASMTFDRFKELLS---NQVNFPV-KISR---NYHTLAGFVMTFLGHIPKISEN  418 (447)
Q Consensus       347 e~i~gei~e~~~~~~~~~~~~~~~v~g~~~i~~~~~~l~---~~~~l~~-~~~~---~~~Tl~G~i~~~lg~iP~~g~~  418 (447)
                      ..+...-+..-.     .......++...++.++.+.+.   +. -+|- ++.+   ..-|...++-+..|.++...+.
T Consensus        93 ~~~~~~~~~~v~-----~~~~~~~v~~~~~l~~al~~m~~~~~~-~~~Vvde~g~lvGiIT~~Dil~~l~~~i~de~~~  165 (173)
T 3ocm_A           93 ADLITEGRVRRN-----RLRDPIIVHESIGILRLMDTLKRSRGQ-LVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDEL  165 (173)
T ss_dssp             HHHHHHSSCCGG-----GSBCCCEECGGGCHHHHHHHHHHSTTC-CEEEECTTCCEEEEECHHHHHHHHHCCCCCTTSC
T ss_pred             HHHhcCCcchhH-----hcCCCeEECCCCcHHHHHHHHHHcCCe-EEEEEeCCCCEEEEEeHHHHHHHHhCcCCCcccc
Confidence            887542111111     1234467888999998765542   22 0221 1122   2347778888888888877664

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.11  E-value=3.4e-06  Score=71.05  Aligned_cols=56  Identities=11%  Similarity=0.097  Sum_probs=50.9

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                      .+++++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++...
T Consensus         8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   64 (133)
T 1y5h_A            8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKG   64 (133)
T ss_dssp             CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTT
T ss_pred             cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHH
Confidence            4789999 5678999999999999999999999999999889999999999999533

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.09  E-value=1.3e-05  Score=71.12  Aligned_cols=118  Identities=14%  Similarity=0.123  Sum_probs=81.4

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhcccccccccceEEecCCeE
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~  369 (447)
                      .+++++|+   ++.++++++++.++++.|++++.+.+||+|++ |+++|+||..|++..+...-+.. -..+.   ....
T Consensus        42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~-v~~im---~~~~  117 (172)
T 3lhh_A           42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLE-LVDLV---KNCN  117 (172)
T ss_dssp             -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTCCCC-GGGGC---BCCE
T ss_pred             CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcCccc-HHHHh---cCCe
Confidence            67899996   46799999999999999999999999999988 99999999999999876431111 11122   3456


Q ss_pred             EEeccCCHHHHHHHh---CCCCCCCC-cCCCC---cccHhHHHHhhcCCCCCCC
Q psy2372         370 IISASMTFDRFKELL---SNQVNFPV-KISRN---YHTLAGFVMTFLGHIPKIS  416 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l---~~~~~l~~-~~~~~---~~Tl~G~i~~~lg~iP~~g  416 (447)
                      .++...++.++.+.+   ++. .+|- ++++.   .-|...++-+..|.+....
T Consensus       118 ~v~~~~~l~~a~~~m~~~~~~-~~pVvd~~g~lvGiit~~Dil~~l~~~~~de~  170 (172)
T 3lhh_A          118 FVPNSLSGMELLEHFRTTGSQ-MVFVVDEYGDLKGLVTLQDMMDALTGEFFQED  170 (172)
T ss_dssp             EEETTCCHHHHHHHHHHHTCS-EEEEECTTSCEEEEEEHHHHHHHHHTTCC---
T ss_pred             EeCCCCCHHHHHHHHHHcCCe-EEEEEeCCCCEEEEeeHHHHHHHHhCCCcccc
Confidence            788899999876554   222 0221 11122   3477777777777776543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.06  E-value=1.4e-05  Score=71.66  Aligned_cols=88  Identities=9%  Similarity=0.078  Sum_probs=64.7

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc--c-ccccccceEEecCCeE
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD--I-SNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge--i-~e~~~~~~~~~~~~~~  369 (447)
                      .+++++| +++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|++..+...  . .+..-..+.  .....
T Consensus         9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im--~~~~~   86 (184)
T 1pvm_A            9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM--RKPIP   86 (184)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTS--BSSCC
T ss_pred             cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHh--CCCCc
Confidence            5789999 4678999999999999999999999999999889999999999999987631  1 111000111  11334


Q ss_pred             EEeccCCHHHHHHH
Q psy2372         370 IISASMTFDRFKEL  383 (447)
Q Consensus       370 ~v~g~~~i~~~~~~  383 (447)
                      .++...++.+..+.
T Consensus        87 ~v~~~~~l~~a~~~  100 (184)
T 1pvm_A           87 KVKSDYDVKDVAAY  100 (184)
T ss_dssp             EEETTCBHHHHHHH
T ss_pred             EECCCCCHHHHHHH
Confidence            56666777776544

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.04  E-value=8.5e-06  Score=68.57  Aligned_cols=88  Identities=10%  Similarity=0.174  Sum_probs=66.6

Q ss_pred             CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCC-CCEEEEEeHHHHHHHHhcccccccccceEEecCCeE
Q psy2372         294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEY-GELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~-G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~  369 (447)
                      .+++++|++   ..++++++++.++++.|++++.+.+||+|++ |+++|+||..|++..+.....+..-..+..   ...
T Consensus         6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~~~~~v~~~m~---~~~   82 (130)
T 3i8n_A            6 VPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGSGQKQLGAVMR---PIQ   82 (130)
T ss_dssp             -CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTTTTSBHHHHSE---ECC
T ss_pred             CCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCCCcCCHHHHhc---CCc
Confidence            678999963   3489999999999999999999999999987 899999999999998765431110011111   135


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .++...++.+..+.+
T Consensus        83 ~v~~~~~l~~~~~~m   97 (130)
T 3i8n_A           83 VVLNNTALPKVFDQM   97 (130)
T ss_dssp             EEETTSCHHHHHHHH
T ss_pred             CcCCCCcHHHHHHHH
Confidence            688888988876554

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.04  E-value=1.5e-06  Score=90.79  Aligned_cols=99  Identities=10%  Similarity=0.107  Sum_probs=19.9

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC--
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ--  301 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~--  301 (447)
                      .+.+++++|+|..+++++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+++.......     ..+.+.  
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~~~~~-----~~d~~~~l  232 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-QHLRYIVFRKDYDRSQVCHNE-----LVDSQKRY  232 (503)
T ss_dssp             ----------------------------------------------------------------CCC-----CBCTTSCB
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-CeEEEEEEecHHHHhhhcccc-----hhcccccc
Confidence            456799999986668899999999999999999999999999965 899999999999987754322     222221  


Q ss_pred             -CCeeeCCCCCHHHHHHHHHHcCCceEEE
Q psy2372         302 -PPLFIPETISTMQLLETFKKNKSELSLV  329 (447)
Q Consensus       302 -~~~~V~~~~~l~~al~~m~~~~~~~a~V  329 (447)
                       ....++. .+..+.++.|.+.+.+...|
T Consensus       233 ~v~a~v~~-~~~~e~~~~l~e~gv~~l~V  260 (503)
T 1me8_A          233 LVGAGINT-RDFRERVPALVEAGADVLCI  260 (503)
T ss_dssp             CCEEEECS-SSHHHHHHHHHHHTCSEEEE
T ss_pred             ccccccCc-hhHHHHHHHHHhhhccceEE
Confidence             1134455 66677788888888887644

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.03  E-value=4.8e-06  Score=72.68  Aligned_cols=87  Identities=13%  Similarity=0.117  Sum_probs=66.8

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCC-CEEEEEeHHHHHHHHhcccccccccceEEecCCeE
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYG-ELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G-~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~  369 (447)
                      .+++++|+   ++.++++++++.++++.|++++.+.+||+|++| +++|+||..|++..+...- +..-..+..   ..+
T Consensus        38 ~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~-~~~v~~im~---~~~  113 (156)
T 3oi8_A           38 LEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPE-QFHLKSILR---PAV  113 (156)
T ss_dssp             CBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCGG-GCCHHHHCB---CCC
T ss_pred             CCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcCC-cccHHHHcC---CCE
Confidence            68999996   478999999999999999999999999999874 9999999999998764321 110011111   145


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .++...++.++.+.+
T Consensus       114 ~v~~~~~l~~a~~~m  128 (156)
T 3oi8_A          114 FVPEGKSLTALLKEF  128 (156)
T ss_dssp             EEETTSBHHHHHHHH
T ss_pred             EECCCCCHHHHHHHH
Confidence            688888888876655

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.02  E-value=1.1e-05  Score=68.66  Aligned_cols=58  Identities=17%  Similarity=0.236  Sum_probs=52.0

Q ss_pred             CChhh---hc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         294 IDITS---AI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       294 ~~v~~---im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      .++++   +| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++..+.+
T Consensus         8 ~~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~   69 (144)
T 2nyc_A            8 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKG   69 (144)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             cchhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcc
Confidence            45667   66 577899999999999999999999999999988999999999999988764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.01  E-value=1.1e-05  Score=70.33  Aligned_cols=58  Identities=7%  Similarity=0.165  Sum_probs=52.9

Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcC--CCCEEEEEeHHHHHHHHhc
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDE--YGELEGIITINDIIHSLIG  351 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe--~G~~iGiVT~~DIle~i~g  351 (447)
                      .+++++|. ++.++++++++.++++.|.+++.+.+||+|+  +|+++|+||..|++..+..
T Consensus        13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~   73 (164)
T 2pfi_A           13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQA   73 (164)
T ss_dssp             CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC
T ss_pred             CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHh
Confidence            67999995 5789999999999999999999999999996  7999999999999988754

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.01  E-value=6.1e-06  Score=71.64  Aligned_cols=118  Identities=11%  Similarity=-0.005  Sum_probs=79.6

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEE-cC-CCCEEEEEeHHHHHHHHhcccccccccceEEecCCe
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVI-DE-YGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGS  368 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~Vv-De-~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~  368 (447)
                      .+++++|+   ++.++++++++.++++.|.+++.+.+||+ |+ .|+++|+||..|++..+...-+.. -..+.   ...
T Consensus        20 ~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~~~~-v~~~m---~~~   95 (153)
T 3oco_A           20 KVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDDKAK-ISTIM---RDI   95 (153)
T ss_dssp             CBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHTTSB-GGGTC---BCC
T ss_pred             CEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCCCCc-HHHHh---CCC
Confidence            67999996   58899999999999999999999999999 65 489999999999998876432111 11111   245


Q ss_pred             EEEeccCCHHHHHHHh---CCCCCCCC-cCCCC---cccHhHHHHhhcCCCCCCC
Q psy2372         369 WIISASMTFDRFKELL---SNQVNFPV-KISRN---YHTLAGFVMTFLGHIPKIS  416 (447)
Q Consensus       369 ~~v~g~~~i~~~~~~l---~~~~~l~~-~~~~~---~~Tl~G~i~~~lg~iP~~g  416 (447)
                      ..++...++.++.+.+   ++. .+|- ++++.   .-|...++-...|.+....
T Consensus        96 ~~v~~~~~l~~~~~~m~~~~~~-~lpVvd~~g~~vGivt~~dil~~l~~~~~de~  149 (153)
T 3oco_A           96 VSVPENMKVPDVMEEMSAHRVP-MAIVIDEYGGTSGIITDKDVYEELFGNLRDEQ  149 (153)
T ss_dssp             EEEETTSBHHHHHHHHHHTTCS-CEEEECTTSCEEEEECHHHHHHHHHC------
T ss_pred             eEECCCCCHHHHHHHHHHcCCc-EEEEEeCCCCEEEEeeHHHHHHHHhccCCCcc
Confidence            6788899999876554   222 1231 11222   3477777777777766543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.98  E-value=9.6e-06  Score=70.69  Aligned_cols=92  Identities=14%  Similarity=0.005  Sum_probs=68.4

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc--cc--ccccceEE-ec
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI--SN--SYQEEIEF-CE  365 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei--~e--~~~~~~~~-~~  365 (447)
                      .+++++|+   ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++..+...-  +.  .....+.. ..
T Consensus        14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~   93 (159)
T 1yav_A           14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML   93 (159)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSB
T ss_pred             hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhcC
Confidence            67999995   4789999999999999999999999999999899999999999999876421  00  00000000 11


Q ss_pred             CCeEEEeccCCHHHHHHHhC
Q psy2372         366 DGSWIISASMTFDRFKELLS  385 (447)
Q Consensus       366 ~~~~~v~g~~~i~~~~~~l~  385 (447)
                      .+...++...++.++.+.+.
T Consensus        94 ~~~~~v~~~~~l~~a~~~m~  113 (159)
T 1yav_A           94 TDIPRLHINDPIMKGFGMVI  113 (159)
T ss_dssp             CSCCEEETTSBHHHHHHHTT
T ss_pred             CCCceEcCCCCHHHHHHHHH
Confidence            23456778888888776653

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.98  E-value=1.3e-05  Score=67.67  Aligned_cols=56  Identities=18%  Similarity=0.181  Sum_probs=50.6

Q ss_pred             ChhhhcC----CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         295 DITSAIQ----PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       295 ~v~~im~----~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      +++++|+    ++.++++++++.++++.|.+++.+.+||+| +|+++|+||..|++..+..
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~   66 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYL   66 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGG
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHH
Confidence            6889985    578999999999999999999999999998 7999999999999976553

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.94  E-value=1.2e-05  Score=68.93  Aligned_cols=55  Identities=20%  Similarity=0.191  Sum_probs=50.7

Q ss_pred             CChhhhcCC---CeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         294 IDITSAIQP---PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       294 ~~v~~im~~---~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      .+++++|++   +.++++++++.++++.|.+++.+.+||+|++|+++|+||..|++..
T Consensus         5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~   62 (152)
T 4gqw_A            5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL   62 (152)
T ss_dssp             SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred             EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence            679999954   7899999999999999999999999999999999999999999854

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.93  E-value=7.3e-06  Score=71.37  Aligned_cols=61  Identities=21%  Similarity=0.396  Sum_probs=54.6

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      ..+.+++++|++   +.++++++++.++++.|.+++.+++||+|++ |+++|+|+.+|+++.+.+
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEK-GEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCC-CEEEEEEEHHHHHHHHHH
Confidence            456789999986   6689999999999999999999999999854 899999999999998764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.92  E-value=3e-05  Score=68.92  Aligned_cols=58  Identities=16%  Similarity=0.200  Sum_probs=52.7

Q ss_pred             CChhhhcCC-----Ceee--CCCCCHHHHHHHHHHcCCceEEEE--cCCCCEEEEEeHHHHHHHHhc
Q psy2372         294 IDITSAIQP-----PLFI--PETISTMQLLETFKKNKSELSLVI--DEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       294 ~~v~~im~~-----~~~V--~~~~~l~~al~~m~~~~~~~a~Vv--De~G~~iGiVT~~DIle~i~g  351 (447)
                      .+++++|++     +.++  ++++++.+|++.|.+++.+.+||+  |++|+++|+||..|++..+..
T Consensus        11 ~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~   77 (185)
T 2j9l_A           11 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIEN   77 (185)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHH
T ss_pred             CcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            679999964     5788  999999999999999999999999  788999999999999998754

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.86  E-value=1.5e-05  Score=70.51  Aligned_cols=54  Identities=19%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHH
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH  347 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle  347 (447)
                      .+++++|+   ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++.
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~   60 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLA   60 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTC
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHh
Confidence            57899995   4789999999999999999999999999999999999999999984

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=97.84  E-value=2.1e-05  Score=72.25  Aligned_cols=62  Identities=13%  Similarity=0.185  Sum_probs=55.3

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN  288 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~  288 (447)
                      .+.+++++|++  ++.++++++++.++++.|.+++...+||+|++ |+++|+|+.+|+++.+.+.
T Consensus       114 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~-g~lvGiIT~~Dil~~i~~e  175 (205)
T 3kxr_A          114 PHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDA-GELIGRVTLRAATALVREH  175 (205)
T ss_dssp             TTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTT-SBEEEEEEHHHHHHHHHHH
T ss_pred             CcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCC-CeEEEEEEHHHHHHHHHHH
Confidence            46789999984  56789999999999999999999999999854 8999999999999987653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.83  E-value=2.9e-05  Score=73.68  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=53.6

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCC--CCEEEEEeHHHHHHHHhccc
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEY--GELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~--G~~iGiVT~~DIle~i~gei  353 (447)
                      ..++++| +++.++++++++.++.+.|.+++.+..||||+.  |+++|+||+.|++..+...+
T Consensus        13 ~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~   75 (250)
T 2d4z_A           13 IQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRI   75 (250)
T ss_dssp             CBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHH
T ss_pred             CChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhh
Confidence            6799999 577899999999999999999999999999974  67999999999998876543

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.80  E-value=5.3e-05  Score=79.60  Aligned_cols=90  Identities=14%  Similarity=0.225  Sum_probs=70.0

Q ss_pred             CCChhhhcC-CCeeeCCC-CCHHHHHHHHHHcCCceEEEEc-CCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCC
Q psy2372         293 NIDITSAIQ-PPLFIPET-ISTMQLLETFKKNKSELSLVID-EYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDG  367 (447)
Q Consensus       293 ~~~v~~im~-~~~~V~~~-~~l~~al~~m~~~~~~~a~VvD-e~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~  367 (447)
                      ..+++++|. ++.+++++ +++.++++.|++++.+.+||+| ++|+++|+||..|+++.+...- ..+ .-..+.  ..+
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im--~~~  460 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKAL--NKR  460 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGE--ETT
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHh--cCC
Confidence            367999994 67899999 9999999999999999999999 7899999999999999887642 211 111121  234


Q ss_pred             eEEEeccCCHHHHHHHh
Q psy2372         368 SWIISASMTFDRFKELL  384 (447)
Q Consensus       368 ~~~v~g~~~i~~~~~~l  384 (447)
                      ...++...++.++.+.+
T Consensus       461 ~~~v~~~~~l~~a~~~m  477 (527)
T 3pc3_A          461 VIRLNESEILGKLARVL  477 (527)
T ss_dssp             CCEEETTSBHHHHHHHH
T ss_pred             CeEECCCCcHHHHHHHH
Confidence            45677788888877766

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.80  E-value=4.8e-05  Score=79.58  Aligned_cols=135  Identities=10%  Similarity=0.041  Sum_probs=92.9

Q ss_pred             CCCCHHHHHHHHHhchhc--------------CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHH
Q psy2372         189 DLITEEEIYKLFREGFDI--------------GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKI  254 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~--------------g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~  254 (447)
                      +..|-+|...++.+..-+              |.++..+  +..  ..-.+.+++++|++ .+++++++++++.++++.|
T Consensus       128 ~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rD--l~~--~~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m  202 (511)
T 3usb_A          128 PEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRD--MRF--IQDYSIKISDVMTK-EQLITAPVGTTLSEAEKIL  202 (511)
T ss_dssp             TTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHH--HTT--CCCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehH--hhh--hccCCCcHHHhccc-CCCEEECCCCCHHHHHHHH
Confidence            345677777777664322              3444322  221  23356789999996 5778999999999999999


Q ss_pred             HhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCC-C--eeeCCCCCHHHHHHHHHHcCCceEEEEc
Q psy2372         255 LDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQP-P--LFIPETISTMQLLETFKKNKSELSLVID  331 (447)
Q Consensus       255 ~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~-~--~~V~~~~~l~~al~~m~~~~~~~a~VvD  331 (447)
                      .+++...+||+|++ ++++|+++.+|+++......     ...+.+.. .  ..+.......+.++.+.+.+.+.+.|-.
T Consensus       203 ~~~~i~~lpVVDe~-g~l~GiIT~~Dil~~~~~p~-----a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id~  276 (511)
T 3usb_A          203 QKYKIEKLPLVDNN-GVLQGLITIKDIEKVIEFPN-----SAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLDT  276 (511)
T ss_dssp             HHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHCTT-----CCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEEC
T ss_pred             HHcCCCEEEEEeCC-CCEeeeccHHHHHHhhhccc-----chhhhccceeeeeeeeeccchHHHHHHHHhhccceEEecc
Confidence            99999999999965 89999999999999875422     23333322 1  2344444556666777788888776654


Q ss_pred             CCC
Q psy2372         332 EYG  334 (447)
Q Consensus       332 e~G  334 (447)
                      ..|
T Consensus       277 a~g  279 (511)
T 3usb_A          277 AHG  279 (511)
T ss_dssp             SCT
T ss_pred             ccc
Confidence            444

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.49  E-value=8.3e-05  Score=71.36  Aligned_cols=61  Identities=16%  Similarity=0.383  Sum_probs=53.6

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      .+.+++++|++  ++.++++++++.++++.|.+++.+.+||+|++ |+++|+|+..|+++.+.+
T Consensus       197 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          197 PRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             TTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHC--
T ss_pred             CCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-CeEEEEEEHHHHHHHHHH
Confidence            56789999974  56789999999999999999999999999855 899999999999988754

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=97.44  E-value=0.0001  Score=71.22  Aligned_cols=61  Identities=18%  Similarity=0.306  Sum_probs=54.6

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      .+.+++++|++  ++.++++++++.++.+.|.+++.+.+||+|++ |+++|+|+.+|+++.+.+
T Consensus       199 ~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          199 DDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             TTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHHHHHH
Confidence            46789999984  56789999999999999999999999999854 899999999999988754

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.40  E-value=9.1e-05  Score=77.05  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=0.0

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII  286 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~  286 (447)
                      .+.+++++|+|+.+++++++++++.++.+.|.+++...+||+|++ ++++|+|+.+|+++...
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDEN-FYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEehHHhhhhcc
Confidence            456899999976678899999999999999999999999999965 89999999999998753

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.25  E-value=0.00018  Score=74.84  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=5.2

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      .+.+++++|+++.++.++++++++.++++.|.+++...+||+|++ ++++|+++.+|+++....
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKD-NKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             ---------------------------------------------------------CHHHHTC
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCC-CeEEEEEEHHHHHhhhcc
Confidence            356899999976678899999999999999999999999999865 899999999999998653

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.25  E-value=0.00025  Score=73.39  Aligned_cols=61  Identities=16%  Similarity=0.383  Sum_probs=54.9

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      .+.+++++|++  ++.+++++++++++.+.|.+++...+||+|++ |+++|+|+.+|+++...+
T Consensus       217 ~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          217 PRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             TTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-SBEEEEEEHHHHHHHHHH
T ss_pred             CCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-CEEEEEEehHhhHHHHHH
Confidence            56789999984  67799999999999999999999999999865 899999999999987654

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.15  E-value=0.00022  Score=76.54  Aligned_cols=56  Identities=5%  Similarity=-0.025  Sum_probs=48.7

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII  286 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~  286 (447)
                      +++++|++  ++.++++++++.|+.+.|.+++.+++||++ + |+++|+|+.+|+++...
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVve-~-G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVTE-R-GKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEEE-T-TEEEEEEEGGGTEECCC
T ss_pred             ccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEEE-C-CEEEEEEehhhHHHHHh
Confidence            38899985  566999999999999999999999999994 4 89999999999998654

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.12  E-value=0.00015  Score=75.56  Aligned_cols=92  Identities=13%  Similarity=0.090  Sum_probs=59.3

Q ss_pred             CCCCHHHHHHHHHhchhc------------CccchHHHHHHhhhcccCceeeceeeeeCCceEEEcCCCCHHHHHHHHHh
Q psy2372         189 DLITEEEIYKLFREGFDI------------GIFNKIEYNLASRALKLDDQCAITLMTPRMKVNFINIDDNIEKNLIKILD  256 (447)
Q Consensus       189 ~~~s~~el~~lv~~~~~~------------g~l~~~E~~~i~~~l~l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~  256 (447)
                      +..|-+|...++....-+            |.++..+  +. . ..-.+.+++++|+|+.++++++++.++.++.+.|.+
T Consensus       104 ~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rD--L~-~-~~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~  179 (496)
T 4fxs_A          104 PEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRD--VR-F-VTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHK  179 (496)
T ss_dssp             SSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHH--HT-T-CCCTTSBGGGTSEEGGGCCEEECC----CGGGTCC-
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHH--Hh-h-cccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHH
Confidence            345677777777664322            4444333  21 1 123467899999987678899999999999999999


Q ss_pred             CCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372         257 SSYNYFPVYKKSISKIIGTLNTKTLFKKI  285 (447)
Q Consensus       257 ~~~s~iPV~~~~~~~ivGiv~~~DLl~~~  285 (447)
                      ++...+||+|++ ++++|+|+.+|+++..
T Consensus       180 ~~i~~lpVVDe~-G~l~GiIT~~DIl~~~  207 (496)
T 4fxs_A          180 ARVEKILVVNDE-FQLKGMITAKDFHKAE  207 (496)
T ss_dssp             --CCCEEEECTT-SBCCEEECCC-----C
T ss_pred             cCCCEEEEEcCC-CCEEEeehHhHHHHhh
Confidence            999999999965 8999999999999864

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.97  E-value=0.00031  Score=72.94  Aligned_cols=107  Identities=14%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCC
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPP  303 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~  303 (447)
                      .+.+++++|++  ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++......     ...+.+...
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~-g~lvGiiT~~Dil~~~~~~~-----~~~~~~g~~  219 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDER-GKLVGLITMSDLVARKKYKN-----AVRDENGEL  219 (486)
T ss_dssp             --------------------------------------------------------------CCTT-----CCBCTTSCB
T ss_pred             CCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecC-CeEEEEEEHHHHHHhhhccc-----cccccCCce
Confidence            35679999985  57789999999999999999999999999854 89999999999998754211     111111110


Q ss_pred             ---eeeCCCCCHHHHHHHHHHcCCceEEEEcC-CCCEEEEEe
Q psy2372         304 ---LFIPETISTMQLLETFKKNKSELSLVIDE-YGELEGIIT  341 (447)
Q Consensus       304 ---~~V~~~~~l~~al~~m~~~~~~~a~VvDe-~G~~iGiVT  341 (447)
                         ..++.+ + .+.+..+.+.+.+.. |+|. .|...++++
T Consensus       220 ~v~~~~~~~-~-~~~a~~l~~~gvd~l-vvdta~G~~~~~L~  258 (486)
T 2cu0_A          220 LVAAAVSPF-D-IKRAIELDKAGVDVI-VVDTAHAHNLKAIK  258 (486)
T ss_dssp             CCEEEECTT-C-HHHHHHHHHTTCSEE-EEECSCCCCHHHHH
T ss_pred             eecceechh-h-HHHHHHHHHhcCCce-EEEecCCcEeehhh
Confidence               123332 3 555677888888765 5553 455544443

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=96.89  E-value=0.0039  Score=64.64  Aligned_cols=62  Identities=15%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      .+.+++++|++ .++.++++++++.++++.|.+++...+||+|++ ++++|+++.+|+++....
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~-g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLETAERILHEHRIEKLPLVDNS-GRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHHHHHHHHHHTTCSEEEEECTT-SBEEEEEEHHHHHHHHHC
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-CcEEEEEEHHHHHHHHhc
Confidence            46789999985 256789999999999999999999999999865 899999999999998764

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.52  E-value=0.00049  Score=71.95  Aligned_cols=62  Identities=13%  Similarity=0.180  Sum_probs=42.9

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII  286 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~  286 (447)
                      .+.+++++|+++.++.++++++++.++.+.|.+++...+||+|++ ++++|+++.+|+++...
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~-g~lvGiIt~~Dll~~~~  232 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDC-DELVAIIARTDLKKNRD  232 (514)
T ss_dssp             ----------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSS-SCCC----CCCCSSCCC
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCC-CeEEEEEEHHHHHHHhh
Confidence            456799999975577899999999999999999999999999865 89999999999998653

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=96.49  E-value=0.00084  Score=69.42  Aligned_cols=58  Identities=14%  Similarity=0.173  Sum_probs=0.0

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHh
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKI  285 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~  285 (447)
                      +.+|+++|++  ++++++.+.+++|+.++|.+++...+||+|++ ++++|+|+.+|+.+..
T Consensus       199 ~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~-g~LvGlIT~kDi~k~~  256 (556)
T 4af0_A          199 ETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSN-GHLVSLVARSDLLKNQ  256 (556)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccC-CcEEEEEEechhhhhh
Confidence            5689999995  68999999999999999999999999999965 8999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	447
d3deda1	87	d.145.1.4 (A:341-427) Probable hemolysin CV0231 {C	1e-19
d2oaia1	87	d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidi	4e-19
d2p4pa1	82	d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Ha	4e-18
d2plsa1	84	d.145.1.4 (A:345-428) Hypothetical protein CT0541	1e-17
d2p13a1	85	d.145.1.4 (A:431-515) Uncharacterized protein NE22	2e-16
d2nqwa1	87	d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Po	2e-15
d2o1ra1	78	d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Ha	5e-15
d2o3ga1	76	d.145.1.4 (A:180-255) Putative protein NMB1485 {Ne	2e-13
d2plia1	84	d.145.1.4 (A:5-88) Uncharacterized protein NMB0537	8e-13
d2r2za1	84	d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Ente	8e-13
d2rk5a1	84	d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Str	2e-11
d2p3ha1	98	d.145.1.4 (A:5-102) Uncharacterized protein Cgl119	4e-11
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-09
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	4e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	8e-07
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	2e-06
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	3e-06
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	3e-06
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	3e-06
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	5e-06
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	5e-06
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	5e-06
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	7e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	7e-06
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	2e-05
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	3e-05
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	5e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	8e-05
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	8e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	4e-04
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.001
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	0.001
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	0.001
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	0.003

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]} Length = 87

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

 Score = 81.3 bits (201), Expect = 1e-19
 Identities = 29/84 (34%), Positives = 50/84 (59%)

Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
           +EI   EDGSW++   ++ DRF+E    +   P +   N HTLAG ++  LG +P +++ 
Sbjct: 1   DEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDR 60

Query: 419 FIWKNIKIEVIDMNNNKIERLLVT 442
           F W     EV+DM+  +++++LV 
Sbjct: 61  FEWNGFSFEVVDMDRTRVDKILVQ 84

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]} Length = 87

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

 Score = 79.3 bits (196), Expect = 4e-19
 Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 2/87 (2%)

Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
             +   EDGS++I  ++  +  +E+L      P     NYHTLAG  +++ G IP + E 
Sbjct: 3   ALMVTREDGSFLIDGTLPIEELREVLG--AELPDGEENNYHTLAGMCISYFGRIPHVGEY 60

Query: 419 FIWKNIKIEVIDMNNNKIERLLVTILN 445
           F W   +IE++D++  +I++LL+  LN
Sbjct: 61  FDWAGWRIEIVDLDGARIDKLLLQRLN 87

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]} Length = 82

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

 Score = 76.6 bits (189), Expect = 4e-18
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
            + SW+I  +   +     L+           NY T+ GF+M  L  IPK ++  ++   
Sbjct: 4   NEDSWLIDGATPLEDVMRALNIHTFPR---DENYETIGGFMMYMLRKIPKKTDFVLYDKY 60

Query: 425 KIEVIDMNNNKIERLLVTILND 446
           K E+ID  N +I++L+V+   D
Sbjct: 61  KFEIIDTENFRIDQLMVSFRKD 82

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]} Length = 84

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

 Score = 75.5 bits (186), Expect = 1e-17
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
           EDGSW++   +     K+ L      P +    YHTL+G +M  LG +P+  +   W+N 
Sbjct: 5   EDGSWLLDGLIAVPELKDTL-GLRAVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENW 63

Query: 425 KIEVIDMNNNKIERLLVTILN 445
           ++EVIDM++ +I+++L T ++
Sbjct: 64  RLEVIDMDSKRIDKVLATKID 84

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 3/78 (3%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
            DG+W++   ++  +   LL    +   + +  Y TL G+++   G+IP   E      +
Sbjct: 9   ADGTWLMDGWISIRKASNLLE--HDLVDE-AERYSTLGGYLLWQFGYIPAAGEQITVDGL 65

Query: 425 KIEVIDMNNNKIERLLVT 442
             E++ +N + I ++ V 
Sbjct: 66  IFEIVSVNKHNIGKVRVH 83

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]} Length = 87

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 12/80 (15%), Positives = 32/80 (40%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
            DGS++     +    +  L    N   ++     TL+G  +     +P + +  +++  
Sbjct: 7   GDGSYLFEGKTSLSDVRHYLDLPENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPF 66

Query: 425 KIEVIDMNNNKIERLLVTIL 444
           + +V  M+  +I  + +   
Sbjct: 67  RFQVTQMDKRRIIEIKIFPF 86

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]} Length = 78

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

 Score = 67.7 bits (166), Expect = 5e-15
 Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNI 424
            DGS II  S       ++ +       +   +  T  G ++  L  IP          +
Sbjct: 4   SDGSMIIDGSANLRDLNKMFN--WELDTE---DARTFNGLILEHLEEIPDEGTICEIDGL 58

Query: 425 KIEVIDMNNNKIERLLVT 442
            I ++++ +N I++  V 
Sbjct: 59  LITILEVGDNMIKQAKVV 76

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]} Length = 76

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

 Score = 63.2 bits (154), Expect = 2e-13
 Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 368 SWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIE 427
           S  +  ++ +      L+  +    +   ++HT+AG +M  L  IP + +   +   + E
Sbjct: 2   SLTVEGALEYVELAPQLN--LPQQEE-DADFHTVAGLIMEELQTIPDVGDFADFHGWRFE 58

Query: 428 VIDMNNNKIERLLVTIL 444
           V++    +IER+ +T L
Sbjct: 59  VVEKEGQRIERVKITKL 75

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]} Length = 84

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

 Score = 61.6 bits (150), Expect = 8e-13
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
           + I       W I A+   +           +    S    T+ G V+  LGH+P   E 
Sbjct: 3   DNIHAVSSERWRIHAATEIEDINTFFG--TEYS---SEEADTIGGLVIQELGHLPVRGEK 57

Query: 419 FIWKNIKIEVIDMNNNKIERLLVTIL 444
            +   ++  V   +N ++  L+ T +
Sbjct: 58  VLIGGLQFTVARADNRRLHTLMATRV 83

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]} Length = 84

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

 Score = 61.6 bits (150), Expect = 8e-13
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 7/83 (8%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE--NFIWK 422
            D  +++   M  D F E+     +  +    +  T+AG+++T LG IP   E  +F   
Sbjct: 7   ADNEYLVQGRMLIDEFNEVFE--TDLHMS---DVDTMAGYLITALGTIPDEGEKPSFEVG 61

Query: 423 NIKIEVIDMNNNKIERLLVTILN 445
           NIK+   +M   ++  L V   +
Sbjct: 62  NIKLTAEEMEGTRLLVLRVHFYD 84

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]} Length = 84

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

 Score = 57.9 bits (140), Expect = 2e-11
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 11/85 (12%)

Query: 365 EDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIW--- 421
            D ++I+  +MT + F E     +      S N  T+AGF +T +G IP   E   +   
Sbjct: 4   ADNTYIVLGTMTLNDFNEYFETDLE-----SDNVDTIAGFYLTGVGTIPSQEEKEHFEVE 58

Query: 422 ---KNIKIEVIDMNNNKIERLLVTI 443
              K++++    + + ++ +L + +
Sbjct: 59  SNGKHLELINDKVKDGRVTKLKILV 83

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]} Length = 98

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

 Score = 57.1 bits (138), Expect = 4e-11
 Identities = 14/103 (13%), Positives = 35/103 (33%), Gaps = 22/103 (21%)

Query: 359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISEN 418
           E+I       W+I      D  +  +  ++        +Y T++G +      + K  + 
Sbjct: 1   EDITETSPDKWLIDGDTPLDEVERAIGYELP-----EGDYETISGLLFDHANALLKTGDV 55

Query: 419 FIW-----------------KNIKIEVIDMNNNKIERLLVTIL 444
                               + ++I V+++  N   +L + +L
Sbjct: 56  IEIPLDFEPEDYLNNTSPTQRILRITVLEVERNVPVKLALALL 98

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.3 bits (127), Expect = 3e-09
 Identities = 22/149 (14%), Positives = 45/149 (30%), Gaps = 17/149 (11%)

Query: 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282
           +       L+    K+   +    ++K    ++ +     P++       +G L      
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 69

Query: 283 KKIISNRSIVNIDITS----------------AIQPPLFIPETISTMQLLETFKKNKSEL 326
             +        + I                  + +P + I    S    + +  +NK   
Sbjct: 70  NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHR 129

Query: 327 SLVID-EYGELEGIITINDIIHSLIGDIS 354
             VID E G    I+T   I+  L   I+
Sbjct: 130 LPVIDPESGNTLYILTHKRILKFLKLFIT 158

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (119), Expect = 4e-08
 Identities = 12/127 (9%), Positives = 41/127 (32%), Gaps = 9/127 (7%)

Query: 232 MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI 291
           +  +  +    +   +   +  +     +  P+  ++   +I       +   I      
Sbjct: 13  IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYN 71

Query: 292 VNIDITS--------AIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIN 343
                            +      +      +++  +K +     V+D+ G L G++T++
Sbjct: 72  DLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLS 131

Query: 344 DIIHSLI 350
           DI+  ++
Sbjct: 132 DILKYIL 138

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (109), Expect = 8e-07
 Identities = 13/129 (10%), Positives = 43/129 (33%), Gaps = 10/129 (7%)

Query: 231 LMTPRMK-VNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR 289
           L       +  +     +   L   +    +  PV  +   +++   +   +        
Sbjct: 14  LQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-KGRVVDIYSKFDVINLAAEKT 72

Query: 290 SIVNIDITSA--------IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIIT 341
                   +          +  L      +   ++    + +    +V+DE+  ++GI++
Sbjct: 73  YNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVS 132

Query: 342 INDIIHSLI 350
           ++DI+ +L+
Sbjct: 133 LSDILQALV 141

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 15/131 (11%), Positives = 46/131 (35%), Gaps = 9/131 (6%)

Query: 237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI----- 291
            +   +++  +   +  + + + +  P+       ++    +  +   I           
Sbjct: 13  NLATASMETKVYDVIKMLAEKNISAVPIVNSEG-TLLNVYESVDVMHLIQDGDYSNLDLS 71

Query: 292 ---VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
                +   +          T     + +  K ++     V+DE  +LEGI+++ DI++ 
Sbjct: 72  VGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNY 131

Query: 349 LIGDISNSYQE 359
           +I D + +   
Sbjct: 132 IIYDKTTTPGV 142

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 15/122 (12%), Positives = 37/122 (30%), Gaps = 3/122 (2%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILD---SSYNYFPVYKKSISKIIGTLNTKTLFKKIIS 287
            M    KV  + + +N+E  L+ +     ++        +    I   +   ++F     
Sbjct: 7   FMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERI 66

Query: 288 NRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347
               ++      +         I+   +        +    V ++    EGI T   ++ 
Sbjct: 67  EFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRRVVLK 126

Query: 348 SL 349
            L
Sbjct: 127 EL 128

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 14/119 (11%), Positives = 44/119 (36%), Gaps = 2/119 (1%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           L+        +     I +   ++  +      +  +   K    + ++    + ++ R 
Sbjct: 6   LLKRPPVS--LPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL 63

Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
            ++         P+ + +T       E  +++     +V+++ GEL G+++I D+    
Sbjct: 64  DLDGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER 122

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 16/161 (9%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282
           +  + +  ++    ++   ++   ++ +L  +  ++    P++    +K  G L      
Sbjct: 17  IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFV 76

Query: 283 KKIISNRSIVN--------------------IDITSAIQPPLFIPETISTMQLLETFKKN 322
             I       +                      I +     +++    S M       K+
Sbjct: 77  NVIKYYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS 136

Query: 323 KSELSLVIDEYGE-----LEGIITINDIIHSLIGDISNSYQ 358
           ++    +ID  GE     +  ++T   I+  +  +   +  
Sbjct: 137 RARRIPLIDVDGETGSEMIVSVLTQYRILKFISMNCKETAM 177

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 11/57 (19%), Positives = 26/57 (45%)

Query: 293 NIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
             + +  +  P+++       + L+    N  +   V+DE GE+ G +   +I+ +L
Sbjct: 83  AKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL 139

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 43.2 bits (101), Expect = 5e-06
 Identities = 15/111 (13%), Positives = 43/111 (38%), Gaps = 2/111 (1%)

Query: 240 FINIDDNIEKNLIKILDSSYNYFPVYK--KSISKIIGTLNTKTLFKKIISNRSIVNIDIT 297
            ++  D +           +   P+    +  S+++G ++++ +             +I 
Sbjct: 8   VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHDRFLEEIM 67

Query: 298 SAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
           +  +  +  P  I+  +  E  +++K     +++E  EL  II   D+  +
Sbjct: 68  TKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN 118

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 32/163 (19%)

Query: 231 LMTPRMKVNFINI----DDNIEKNLIKILDSSYNYFPVYKKSIS-KIIGTLNTKTLFKKI 285
           +M PR     + +       +E     I +++Y+ FPV     S +++G +  + L   I
Sbjct: 8   VMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISI 67

Query: 286 ISNRSIVNIDITSAIQ-------------------------PPLFIPETISTMQLLETFK 320
            + R   +  ++++I                           P  + +      +++ F+
Sbjct: 68  ENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFR 127

Query: 321 KNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEF 363
           K       ++   G L GIIT  D++   I  ++N   + I F
Sbjct: 128 KLGLRQ-CLVTHNGRLLGIITKKDVLKH-IAQMANQDPDSILF 168

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 8/124 (6%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
            +T       +     + + L ++     N   V  +             L   + S+  
Sbjct: 6   WVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDSSVF 63

Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
                      P  F+ E  +    L  F +++     V+DE   L+G ++++D + +LI
Sbjct: 64  NKVS------LPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALI 117

Query: 351 GDIS 354
             ++
Sbjct: 118 EALA 121

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 42.9 bits (100), Expect = 7e-06
 Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 4/120 (3%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           +M     V+ I+I  ++E  L   ++++     V K+ +   I T            + +
Sbjct: 5   VMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLA 62

Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
            V +            P         E   KN     L+++E  E+ G+I+  DI+ + +
Sbjct: 63  EVKVWEVMERDLVTISPRATIKE-AAEKMVKNVVW-RLLVEEDDEIIGVISATDILRAKM 120

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 19/123 (15%), Positives = 37/123 (30%), Gaps = 8/123 (6%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           +MT       I +       L          FPV  K    +      + L        +
Sbjct: 6   IMTQNPVT--ITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPDEEQLA 63

Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
           ++        +    + E  +  +  +   +      +V+D  G+  GI+T+ DII    
Sbjct: 64  MLVK------RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYF 117

Query: 351 GDI 353
              
Sbjct: 118 AKS 120

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 26/136 (19%), Positives = 54/136 (39%), Gaps = 9/136 (6%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           +M    K   +N +  +    +KI++ ++ Y  V K      +G L+ +++ K+ I    
Sbjct: 8   IMNSNFKT--VNWNTTVFD-AVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNK 64

Query: 291 IVNIDITSAIQPPLFIP--ETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
             +      +                +     +N  E   V+D+ G + GI+T+ D+   
Sbjct: 65  KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRY 124

Query: 349 L----IGDISNSYQEE 360
           L    I DI  S++ +
Sbjct: 125 LSRASITDILLSHRTK 140

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG 351
           Q P  + E  S  +    F     + + V    G+L G++ + +I  ++ G
Sbjct: 111 QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-GKLVGVVALAEIQAAIEG 160

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 21/127 (16%), Positives = 47/127 (37%), Gaps = 4/127 (3%)

Query: 223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLF 282
           ++++     M  +  V  +  D  +      + + +     V   +    +G +  + + 
Sbjct: 1   MEEEIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK--PVGIITERDIV 56

Query: 283 KKIISNRSIVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITI 342
           K I   +S+            + I E       L   ++       V+D+ G L+GII+I
Sbjct: 57  KAIGKGKSLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISI 116

Query: 343 NDIIHSL 349
            DI  ++
Sbjct: 117 RDITRAI 123

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 13/126 (10%), Positives = 48/126 (38%), Gaps = 3/126 (2%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
            MT   K+  +    ++++    +++       V     + +     +  + + I+    
Sbjct: 10  YMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLP 67

Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI 350
                     +  +         ++L    +++ +  ++I+E G++ GI T++D++ +  
Sbjct: 68  YDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIK-HILIEEEGKIVGIFTLSDLLEASR 126

Query: 351 GDISNS 356
             +  +
Sbjct: 127 RRLETA 132

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 10/124 (8%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           LM        ++ +D +     KI +       V  + I  ++ T +  +  +    +  
Sbjct: 6   LMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYCKDSC 63

Query: 291 IVNIDITSAIQP--------PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITI 342
                   +  P        P+ +  T      +            V+D   +  GI+T 
Sbjct: 64  SQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTE 123

Query: 343 NDII 346
            + +
Sbjct: 124 REFL 127

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 16/136 (11%), Positives = 46/136 (33%), Gaps = 8/136 (5%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
            M+ +++   I  +  +++ +  +L   +   PV       +        + +   +   
Sbjct: 7   FMSTKVQT--IYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDK 64

Query: 291 IVNIDITSA------IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITIND 344
           +              +   + I E  S  +        +    L++++   + GIIT  D
Sbjct: 65  LDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERD 124

Query: 345 IIHSLIGDISNSYQEE 360
           ++ +L   +     +E
Sbjct: 125 LLIALHHILVMEKFKE 140

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 15/110 (13%), Positives = 38/110 (34%), Gaps = 4/110 (3%)

Query: 241 INIDDNIEKNLIKILDSSYNYFPVYKKSIS-KIIGTLNTKTLFKKIISNRSIVNIDITSA 299
           +  +  + +    +     +  P+ +   + K++G +  + +      N  I        
Sbjct: 10  LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMT--- 66

Query: 300 IQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL 349
            +  +                +++ E   ++D  G L G+ITI DI   +
Sbjct: 67  SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVI 116

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 36.7 bits (84), Expect = 0.001
 Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 3/117 (2%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           +MT       I  +  +   +  + + +     +Y   +      L      + +I N  
Sbjct: 6   IMTTEFVS--IVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVNDD 63

Query: 291 IVNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIH 347
              I      +  + +        + +T +        V D    L GI+T++DII 
Sbjct: 64  DTLIA-DILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIID 119

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 6/121 (4%)

Query: 231 LMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS 290
           +M     V  +   + +      + +      P+      ++ G L  + +  K ++   
Sbjct: 6   IMNAG--VTCVGEHETLTAAAQYMREHDIGALPICGDDD-RLHGMLTDRDIVIKGLAAGL 62

Query: 291 IVNIDITSAIQP--PLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS 348
             N      +      ++    S  ++L   ++++     VI E   L GI+T  DI   
Sbjct: 63  DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARH 121

Query: 349 L 349
           L
Sbjct: 122 L 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	447
d2oaia1	87	Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}	99.88
d2p13a1	85	Uncharacterized protein NE2227 {Nitrosomonas europ	99.86
d3deda1	87	Probable hemolysin CV0231 {Chromobacterium violace	99.86
d2o1ra1	78	Hypothetical protein HI0107 {Haemophilus influenza	99.86
d2plsa1	84	Hypothetical protein CT0541 {Chlorobium tepidum [T	99.86
d2p4pa1	82	Hypothetical protein HD1797 {Haemophilus ducreyi [	99.85
d2plia1	84	Uncharacterized protein NMB0537 {Neisseria meningi	99.85
d2o3ga1	76	Putative protein NMB1485 {Neisseria meningitidis [	99.85
d2nqwa1	87	Hypothetical protein PG0272 {Porphyromonas gingiva	99.84
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.82
d2r2za1	84	Putative hemolysin EF0700 {Enterococcus faecalis [	99.82
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.8
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.79
d2rk5a1	84	Putative hemolysin SMU1693 {Streptococcus mutans [	99.78
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.78
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.77
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.76
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.76
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.76
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.76
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.76
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.76
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.76
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.75
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.74
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.74
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.73
d2p3ha1	98	Uncharacterized protein Cgl1194/Cg1349 {Corynebact	99.73
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.72
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.72
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.72
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.71
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.71
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.69
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.69
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.67
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.65
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.63
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.54
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.51
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.44
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.43
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.41
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.36
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.31
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.28
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.25
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.23
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.19
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.18
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.17
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.16
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.09
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.08
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.07
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.05
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.05
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.03
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.98
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.96
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.88
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.86
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.63
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	97.63
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	82.07

>d2oaia1 d.145.1.4 (A:5-91) Hemolysin TlyC {Xylella fastidiosa [TaxId: 2371]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hemolysin TlyC
species: Xylella fastidiosa [TaxId: 2371]

Probab=99.88  E-value=1e-22  Score=161.24  Aligned_cols=87  Identities=33%  Similarity=0.720  Sum_probs=76.1

Q ss_pred             cccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCee
Q psy2372         357 YQEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKI  436 (447)
Q Consensus       357 ~~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri  436 (447)
                      +++.+.+.++|+|+++|+++++|+++.||++  +|.+++.+|+|+|||+++++|++|++|+++.++||+|+|.+++++||
T Consensus         1 E~~~i~~~~dg~~~v~G~~~l~dl~~~l~~~--l~~~e~~~~~Tl~G~i~~~lg~iP~~Ge~v~~~~~~f~V~~~~~~rI   78 (87)
T d2oaia1           1 EDALMVTREDGSFLIDGTLPIEELREVLGAE--LPDGEENNYHTLAGMCISYFGRIPHVGEYFDWAGWRIEIVDLDGARI   78 (87)
T ss_dssp             CCCSEEECTTSCEEEETTCBHHHHHHHHTC---------CCCSBHHHHHHHHHSSCCCTTCEEEETTEEEEEEEEETTEE
T ss_pred             CCCCeEEcCCCEEEEEecCCHHHHHHHHCCC--CCcccccccccHHHHHHHHhCcCCCCCCEEEECCEEEEEEEeeCCeE
Confidence            3567889999999999999999999999999  98655568999999999999999999999999999999999999999


Q ss_pred             eEEEEEecC
Q psy2372         437 ERLLVTILN  445 (447)
Q Consensus       437 ~~v~v~~~~  445 (447)
                      .+|+|+|+.
T Consensus        79 ~~v~v~rl~   87 (87)
T d2oaia1          79 DKLLLQRLN   87 (87)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECc
Confidence            999999873

>d2p13a1 d.145.1.4 (A:431-515) Uncharacterized protein NE2227 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NE2227
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.86  E-value=3.6e-22  Score=157.36  Aligned_cols=84  Identities=21%  Similarity=0.447  Sum_probs=78.6

Q ss_pred             ccceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeee
Q psy2372         358 QEEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIE  437 (447)
Q Consensus       358 ~~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~  437 (447)
                      +..+.+.+||+|+++|+++++|+++.||++  +|++ +++|+|||||+++++|++|++||++.++||+|+|.+++++||.
T Consensus         2 ~~~~~~~~dg~~~v~G~~~l~dl~~~l~~~--l~~e-~~~~~TlgG~i~~~lg~iP~~Ge~v~~~~~~f~V~~~~~~rI~   78 (85)
T d2p13a1           2 KVVAEQQADGTWLMDGWISIRKASNLLEHD--LVDE-AERYSTLGGYLLWQFGYIPAAGEQITVDGLIFEIVSVNKHNIG   78 (85)
T ss_dssp             CCSEEECTTSCEEEETTSBHHHHHHHHTSC--CCCT-TCCCCBHHHHHHHHHSSCCCTTCEEEETTEEEEECCBCSSSBC
T ss_pred             CcccEEcCCCeEEEEecCCHHHHHHHHCCC--CCCc-cccceEHHHHHHHHhCcCCCCCCEEEECCEEEEEEEeeCCEEE
Confidence            456778999999999999999999999999  9853 5689999999999999999999999999999999999999999


Q ss_pred             EEEEEec
Q psy2372         438 RLLVTIL  444 (447)
Q Consensus       438 ~v~v~~~  444 (447)
                      +|+|+|.
T Consensus        79 ~V~i~rt   85 (85)
T d2p13a1          79 KVRVHRT   85 (85)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999984

>d3deda1 d.145.1.4 (A:341-427) Probable hemolysin CV0231 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Probable hemolysin CV0231
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.86  E-value=8.2e-22  Score=155.97  Aligned_cols=83  Identities=35%  Similarity=0.745  Sum_probs=77.2

Q ss_pred             ceEEecCCeEEEeccCCHHHHHHHhCCCCCCC--CcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeee
Q psy2372         360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFP--VKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIE  437 (447)
Q Consensus       360 ~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~--~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~  437 (447)
                      ++.+.++|+|+++|+++++|+++.||++  +|  .+++++|+|+|||+++++|++|++|+++.++||+|+|.+++++||.
T Consensus         2 eIv~~~dg~~~v~G~~~l~dl~~~~~~~--l~~~~~~~~~~~TlgG~il~~lg~iP~~Ge~v~~~~~~f~V~~~d~~rI~   79 (87)
T d3deda1           2 EIVQREDGSWLVDGMVSLDRFREFFELE--APLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEWNGFSFEVVDMDRTRVD   79 (87)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHTTCC--SCCTTGGGTCCCBHHHHHHHHHCSSCCTTCEEEETTEEEEEEEEETTEEE
T ss_pred             CcEEecCCeEEEEeeCCHHHHHHHhCCC--CCCCccccccccCHHHHHHHHhCcCCCCCCEEEECCEEEEEEEeeCCeEE
Confidence            5778899999999999999999999998  65  3346689999999999999999999999999999999999999999


Q ss_pred             EEEEEec
Q psy2372         438 RLLVTIL  444 (447)
Q Consensus       438 ~v~v~~~  444 (447)
                      +|+|+|.
T Consensus        80 ~V~v~r~   86 (87)
T d3deda1          80 KILVQRH   86 (87)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999985

>d2o1ra1 d.145.1.4 (A:1-78) Hypothetical protein HI0107 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HI0107
species: Haemophilus influenzae [TaxId: 727]

Probab=99.86  E-value=9.3e-22  Score=152.34  Aligned_cols=77  Identities=21%  Similarity=0.362  Sum_probs=73.2

Q ss_pred             EecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEE
Q psy2372         363 FCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT  442 (447)
Q Consensus       363 ~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~  442 (447)
                      +.+||+|+++|+++++|+++.||++  +|+   ++|+|+|||+++++|++|++||++.++||+|+|++++++||.+|+|+
T Consensus         2 ~~~Dg~~~v~G~~~l~dl~~~l~~~--l~~---~~~~Ti~G~v~~~lg~iP~~Ge~v~~~~~~f~V~~~~~~rI~~V~i~   76 (78)
T d2o1ra1           2 QQSDGSMIIDGSANLRDLNKMFNWE--LDT---EDARTFNGLILEHLEEIPDEGTICEIDGLLITILEVGDNMIKQAKVV   76 (78)
T ss_dssp             ECTTSCEEEETTCBHHHHHHHHCCC--CCC---SSCSBHHHHHHHHCSSCCCTTCEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             EecCCEEEEEeeCCHHHHHHHHCCC--CCC---ccchHHHHHHHHHhCcCCCCCCEEEECCEEEEEEEccCCeEEEEEEE
Confidence            5689999999999999999999999  984   47999999999999999999999999999999999999999999999


Q ss_pred             ec
Q psy2372         443 IL  444 (447)
Q Consensus       443 ~~  444 (447)
                      |+
T Consensus        77 kl   78 (78)
T d2o1ra1          77 KL   78 (78)
T ss_dssp             EC
T ss_pred             EC
Confidence            85

>d2plsa1 d.145.1.4 (A:345-428) Hypothetical protein CT0541 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein CT0541
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.86  E-value=1.2e-21  Score=153.91  Aligned_cols=82  Identities=32%  Similarity=0.644  Sum_probs=75.7

Q ss_pred             EEecCCeEEEeccCCHHHHHHHhCCCCCCCCc-CCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEEE
Q psy2372         362 EFCEDGSWIISASMTFDRFKELLSNQVNFPVK-ISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLL  440 (447)
Q Consensus       362 ~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~-~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~  440 (447)
                      ++++||+|+++|+++++|+++.||++  +|.+ ++++|+|||||+++++|++|++||++.++||+|+|.+++++||.+|+
T Consensus         2 v~~~dg~~~v~G~~~l~dl~~~l~~~--~~~~~e~~~~~Tl~G~i~~~lg~iP~~Ge~v~~~~~~f~V~~~~~~rI~~v~   79 (84)
T d2plsa1           2 VQREDGSWLLDGLIAVPELKDTLGLR--AVPEEEKGVYHTLSGMIMWLLGRLPQTGDITFWENWRLEVIDMDSKRIDKVL   79 (84)
T ss_dssp             EECTTSCEEEETTCBHHHHHHHHTCS--CCTTTTSCSCCBHHHHHHHHHTSCCCTTCEEEETTEEEEEEEEETTEEEEEE
T ss_pred             eEecCCeEEEEccCCHHHHHHHHCCC--CCcccccccccCHHHHHHHHhCccCCCCCEEEECCEEEEEEEeeCCeEEEEE
Confidence            46799999999999999999999998  7643 34579999999999999999999999999999999999999999999


Q ss_pred             EEecC
Q psy2372         441 VTILN  445 (447)
Q Consensus       441 v~~~~  445 (447)
                      |+|+.
T Consensus        80 i~~le   84 (84)
T d2plsa1          80 ATKID   84 (84)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99874

>d2p4pa1 d.145.1.4 (A:1-82) Hypothetical protein HD1797 {Haemophilus ducreyi [TaxId: 730]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein HD1797
species: Haemophilus ducreyi [TaxId: 730]

Probab=99.85  E-value=2.3e-21  Score=151.60  Aligned_cols=81  Identities=28%  Similarity=0.552  Sum_probs=74.4

Q ss_pred             EecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEE
Q psy2372         363 FCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVT  442 (447)
Q Consensus       363 ~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~  442 (447)
                      ++++|+|+++|+++++|+++.||++  ++.+ +++|+|||||+++++|++|++|+++.++||+|+|.+++++||.+|+++
T Consensus         2 ~~dd~~~~v~g~~~l~d~~~~~~~~--~~~~-~~~~~TlgG~i~~~lg~iP~~Ge~v~~~~~~f~V~~~~~~rI~~V~i~   78 (82)
T d2p4pa1           2 RRNEDSWLIDGATPLEDVMRALNIH--TFPR-DENYETIGGFMMYMLRKIPKKTDFVLYDKYKFEIIDTENFRIDQLMVS   78 (82)
T ss_dssp             CCCCSEEEEETTSBHHHHHHHTTCC--CSCC-SCSSCBHHHHHHHHHCSCCCTTCEEEETTEEEEEEEEETTEEEEEEEE
T ss_pred             EEcCCEEEEEeeCCHHHHHHHhCCC--CCCc-ccCccCHHHHHHHHhCcCCCCCCEEEECCEEEEEEEeecCeEEEEEEE
Confidence            4589999999999999999999998  6432 568999999999999999999999999999999999999999999999


Q ss_pred             ecCC
Q psy2372         443 ILND  446 (447)
Q Consensus       443 ~~~~  446 (447)
                      +.++
T Consensus        79 ~~~d   82 (82)
T d2p4pa1          79 FRKD   82 (82)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            8753

>d2plia1 d.145.1.4 (A:5-88) Uncharacterized protein NMB0537 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein NMB0537
species: Neisseria meningitidis [TaxId: 487]

Probab=99.85  E-value=3.7e-21  Score=150.94  Aligned_cols=82  Identities=20%  Similarity=0.458  Sum_probs=77.8

Q ss_pred             cceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeE
Q psy2372         359 EEIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIER  438 (447)
Q Consensus       359 ~~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~  438 (447)
                      +.+.+.++++|+++|+++++|+++.||++  +|.   ++|+|+|||+++++|++|++|+++.++||+|+|.+++++||.+
T Consensus         3 ~~I~~~~~~~~~v~g~~~l~dl~~~~~~~--l~~---~~~~TigG~i~~~l~~iP~~g~~v~~~~~~f~V~~~~~~rI~~   77 (84)
T d2plia1           3 DNIHAVSSERWRIHAATEIEDINTFFGTE--YSS---EEADTIGGLVIQELGHLPVRGEKVLIGGLQFTVARADNRRLHT   77 (84)
T ss_dssp             CSEEEEETTEEEEETTCBHHHHHHHHCCC--CCC---SSCCBHHHHHHHHHSSCCCTTCEEEETTEEEEEEEECSSCEEE
T ss_pred             cceEEeCCCEEEEEecCCHHHHHHHhCCC--CCc---cccHHHHHHHHHHhCccccCCcEEEECCEEEEEEEccCCeEEE
Confidence            46889999999999999999999999999  984   4799999999999999999999999999999999999999999


Q ss_pred             EEEEecC
Q psy2372         439 LLVTILN  445 (447)
Q Consensus       439 v~v~~~~  445 (447)
                      |+++|++
T Consensus        78 V~i~ki~   84 (84)
T d2plia1          78 LMATRVK   84 (84)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999874

>d2o3ga1 d.145.1.4 (A:180-255) Putative protein NMB1485 {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative protein NMB1485
species: Neisseria meningitidis [TaxId: 487]

Probab=99.85  E-value=1.8e-21  Score=149.86  Aligned_cols=76  Identities=22%  Similarity=0.409  Sum_probs=71.7

Q ss_pred             CeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeeeEEEEEecC
Q psy2372         367 GSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIERLLVTILN  445 (447)
Q Consensus       367 ~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~~v~v~~~~  445 (447)
                      ++|+++|+++++|+++.||++  +|++ +.+|+|+|||+++++|++|++||++.++||+|+|.+++++||.+|+|+|+|
T Consensus         1 ~s~~vdG~~~i~dl~~~l~~~--~~~~-~~~~~Ti~G~vl~~lg~iP~~Ge~v~~~~~~f~V~~~~~~rI~~V~v~~lP   76 (76)
T d2o3ga1           1 ESLTVEGALEYVELAPQLNLP--QQEE-DADFHTVAGLIMEELQTIPDVGDFADFHGWRFEVVEKEGQRIERVKITKLP   76 (76)
T ss_dssp             CCSEEETTCBHHHHTTTTTCC--CCCT-TCSCSBHHHHHHHHHTSCCCTTCEEEETTEEEEEEEEETTEEEEEEEEECC
T ss_pred             CeEEEEcCCCHHHHHHHHCcC--CCcc-ccccccHHHHHHHHhCcCCCCCCEEEECCEEEEEEEeeCCeEEEEEEEECc
Confidence            479999999999999999999  8853 557999999999999999999999999999999999999999999999986

>d2nqwa1 d.145.1.4 (A:4-90) Hypothetical protein PG0272 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Hypothetical protein PG0272
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.84  E-value=3.8e-21  Score=152.11  Aligned_cols=84  Identities=13%  Similarity=0.371  Sum_probs=76.5

Q ss_pred             ceEEecCCeEEEeccCCHHHHHHHhCCCCCCCC--cCCCCcccHhHHHHhhcCCCCCCCcEEEEcCEEEEEEEeecCeee
Q psy2372         360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPV--KISRNYHTLAGFVMTFLGHIPKISENFIWKNIKIEVIDMNNNKIE  437 (447)
Q Consensus       360 ~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~--~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~~~~f~v~~~~~~ri~  437 (447)
                      ++.+.++|+|+++|+++++|+++.|+++  ++.  +++++|+|+|||+++++|++|++||++.++||+|+|.+++++||.
T Consensus         2 p~~ki~d~~~~v~G~~~l~dl~~~l~~~--l~~~~~~~~~~~Ti~G~i~~~lg~iP~~Ge~v~~~~~~f~V~~~~~~rI~   79 (87)
T d2nqwa1           2 PFKVLGDGSYLFEGKTSLSDVRHYLDLP--ENAFGELGDEVDTLSGLFLEIKQELPHVGDTAVYEPFRFQVTQMDKRRII   79 (87)
T ss_dssp             CEEECTTSCEEEETTCBHHHHHHHHTCC--TTTTHHHHTTCSBHHHHHHHHHCSCCCTTCEEEETTEEEEEEEECSSSEE
T ss_pred             CeEEECCCEEEEEEeCCHHHHHHHhCCC--cccccCcccceeeHHHHHHHHhCccccCCeEEEECCEEEEEEEccCCeEE
Confidence            4678999999999999999999999998  742  124689999999999999999999999999999999999999999


Q ss_pred             EEEEEecC
Q psy2372         438 RLLVTILN  445 (447)
Q Consensus       438 ~v~v~~~~  445 (447)
                      +|+|+|.+
T Consensus        80 ~V~v~p~e   87 (87)
T d2nqwa1          80 EIKIFPFE   87 (87)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEECc
Confidence            99998753

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=1.4e-20  Score=160.48  Aligned_cols=124  Identities=18%  Similarity=0.262  Sum_probs=108.7

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC-----ccCCChhhh
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS-----IVNIDITSA  299 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~-----~~~~~v~~i  299 (447)
                      +.+|+++|+|..+++++++++|+++|++.|.+++++++||+|++ ++++|+++.+|+++.......     ....++.++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~   79 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-YRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEV   79 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-CBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHH
T ss_pred             CCCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-cccccEEEcchhHHHhhcccccccccccccccccc
Confidence            46899999999999999999999999999999999999999865 899999999999988753211     123578899


Q ss_pred             c-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         300 I-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       300 m-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      | ++++++++++++.++++.|.++  +.+||+|++|+++|+||.+|+++++..
T Consensus        80 m~~~~~~v~~~~~l~~~~~~~~~~--~~l~Vvd~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          80 MLTDIPRLHINDPIMKGFGMVINN--GFVCVENDEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             SBCSCCEEETTSBHHHHHHHTTTC--SEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHHHHHHhC--CEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            9 4678999999999999999875  469999999999999999999999753

>d2r2za1 d.145.1.4 (A:5-88) Putative hemolysin EF0700 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin EF0700
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.82  E-value=4.2e-20  Score=144.99  Aligned_cols=80  Identities=26%  Similarity=0.480  Sum_probs=74.1

Q ss_pred             ceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCc--EEEEcCEEEEEEEeecCeee
Q psy2372         360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISE--NFIWKNIKIEVIDMNNNKIE  437 (447)
Q Consensus       360 ~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~--~~~~~~~~f~v~~~~~~ri~  437 (447)
                      .+.+.++|+|+++|+++++|+++.||++  +|+   ++|+|+|||+++++|++|++||  .++++|++|+|.+++++||.
T Consensus         2 ~~~~i~~~~~~v~G~~~l~dl~~~l~~~--l~~---~~~~TigG~i~~~lg~iP~~Ge~~~i~~~~~~f~V~~~~~~rI~   76 (84)
T d2r2za1           2 LYTQVADNEYLVQGRMLIDEFNEVFETD--LHM---SDVDTMAGYLITALGTIPDEGEKPSFEVGNIKLTAEEMEGTRLL   76 (84)
T ss_dssp             CEEEEETTEEEEETTSBHHHHHHHHTCC--CCC---TTCCBHHHHHHHHHSSCCCTTCCCEEEETTEEEEEEEEETTEEE
T ss_pred             ceEEECCCEEEEEeeCCHHHHHHHHCcC--CCC---ccchhHHHHHHHHhCcCCCCCCEEEEEECCEEEEEEEccCCeEE
Confidence            4678999999999999999999999999  983   4799999999999999999999  58889999999999999999


Q ss_pred             EEEEEec
Q psy2372         438 RLLVTIL  444 (447)
Q Consensus       438 ~v~v~~~  444 (447)
                      +|+|+..
T Consensus        77 ~v~v~~~   83 (84)
T d2r2za1          77 VLRVHFY   83 (84)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999753

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.80  E-value=3e-19  Score=151.07  Aligned_cols=124  Identities=18%  Similarity=0.262  Sum_probs=111.6

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-C
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-Q  301 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~  301 (447)
                      |++..|+++|+  ++++++++++++.++.+.|.+++++.+||+++  ++++|+++.+|+++...++.. .+.++.++| +
T Consensus         1 l~~~~V~d~m~--~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~--~~~~Givt~~dl~~~~~~~~~-~~~~v~~~~~~   75 (127)
T d2ef7a1           1 MEEEIVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG--NKPVGIITERDIVKAIGKGKS-LETKAEEFMTA   75 (127)
T ss_dssp             CCCCBGGGTSB--CSCCEEETTCBHHHHHHHHHHHTCSEEEEEET--TEEEEEEEHHHHHHHHHTTCC-TTCBGGGTSEE
T ss_pred             CCccCHHHhCC--CCCeEECCcCcHHHHHHHHHHcCCceEEeecc--cchhhhcchhHHHHHHHhhcc-ccchhhhhhhh
Confidence            46788999998  47889999999999999999999999999984  799999999999998765433 346789998 6


Q ss_pred             CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         302 PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       302 ~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++++.+
T Consensus        76 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          76 SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            78899999999999999999999999999999999999999999999854

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=3.1e-19  Score=149.76  Aligned_cols=119  Identities=17%  Similarity=0.269  Sum_probs=107.3

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~  304 (447)
                      ++|+++|+  +++.++++++|++++++.|.+++++.+||+|++ ++++|+++.+|+++...+      .++.++| ++++
T Consensus         1 m~v~~~m~--~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~~dl~~~~~~------~~v~~~~~~~~~   71 (121)
T d1vr9a3           1 MKVKKWVT--QDFPMVEESATVRECLHRMRQYQTNECIVKDRE-GHFRGVVNKEDLLDLDLD------SSVFNKVSLPDF   71 (121)
T ss_dssp             CBGGGGCB--SCSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-SBEEEEEEGGGGTTSCTT------SBSGGGCBCTTC
T ss_pred             CCchhhhc--CCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC-ceeEEEeehhhhhhhhcc------ccccccccCccE
Confidence            46899999  477799999999999999999999999999855 899999999999875322      5788888 5778


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.+.+++
T Consensus        72 ~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~~l  120 (121)
T d1vr9a3          72 FVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEAL  120 (121)
T ss_dssp             CEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSC
T ss_pred             EECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999988653

>d2rk5a1 d.145.1.4 (A:5-88) Putative hemolysin SMU1693 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Putative hemolysin SMU1693
species: Streptococcus mutans [TaxId: 1309]

Probab=99.78  E-value=2.5e-19  Score=140.68  Aligned_cols=76  Identities=22%  Similarity=0.442  Sum_probs=71.1

Q ss_pred             EEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEc------CEEEEEEEeecCe
Q psy2372         362 EFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWK------NIKIEVIDMNNNK  435 (447)
Q Consensus       362 ~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~------~~~f~v~~~~~~r  435 (447)
                      .+.++|+|+++|+++++|+++.||++  +|+   ++|+|+|||+++++|++|++||+++++      +++|+|.+++++|
T Consensus         1 kki~d~~~~v~G~~~l~dl~~~l~~~--l~~---~~~dTlgG~v~~~lg~iP~~Ge~~~~~~~~~~~~~~~~v~~~~~~r   75 (84)
T d2rk5a1           1 REIADNTYIVLGTMTLNDFNEYFETD--LES---DNVDTIAGFYLTGVGTIPSQEEKEHFEVESNGKHLELINDKVKDGR   75 (84)
T ss_dssp             EEEETTEEEEETTSBHHHHHHHHTCC--CCC---TTCCBHHHHHHHHHCSCCCSSSCCEEEEEETTEEEEEEEEEEETTE
T ss_pred             CEecCCEEEEEeeeEHHHHHHHhCCC--ccc---ccchhHHHHHHHHhCcCCCCCCEEEEecccccCcEEEEEEEcccCE
Confidence            36789999999999999999999999  873   479999999999999999999999986      8999999999999


Q ss_pred             eeEEEEE
Q psy2372         436 IERLLVT  442 (447)
Q Consensus       436 i~~v~v~  442 (447)
                      |.+|+|.
T Consensus        76 I~~v~v~   82 (84)
T d2rk5a1          76 VTKLKIL   82 (84)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999986

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=1.3e-19  Score=152.47  Aligned_cols=118  Identities=19%  Similarity=0.236  Sum_probs=89.0

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~  304 (447)
                      ++|+++|++  +++++++++++.+|++.|.+++++++||+|++ |+++|+++.+|++....+      ..+.++| ++++
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~~dl~~~~~~------~~~~~~~~~~~~   71 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKE-GKLVGIISVKRILVNPDE------EQLAMLVKRDVP   71 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTT-CCEEEEEESSCC----------------CCCBSCCC
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEecc-ccchhhhhcchhhhhhcc------cchhhcccccee
Confidence            478999996  67799999999999999999999999999865 899999999999976432      4678888 5788


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      ++++++++.++++.|.+++.+.+||+|++|+++|+||..|++++++++
T Consensus        72 ~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~~  119 (122)
T d2yzqa2          72 VVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAK  119 (122)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTT
T ss_pred             ecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999998875

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.77  E-value=3.9e-19  Score=152.67  Aligned_cols=125  Identities=16%  Similarity=0.235  Sum_probs=110.0

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC------CccCCChhhh
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR------SIVNIDITSA  299 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~------~~~~~~v~~i  299 (447)
                      .+|+++|++  +++++++++|+.+|++.|.+++++++||++++ ++++|+++.+|+++......      .....+++++
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~i   78 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-NKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDV   78 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-CccccccccccchhhhhccccccccccccCCCHHHH
Confidence            468999996  57899999999999999999999999999865 89999999999987654211      1123679999


Q ss_pred             c-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         300 I-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       300 m-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      | ++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++++.+..
T Consensus        79 m~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~~~  133 (141)
T d3ddja1          79 MVTNLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHHIL  133 (141)
T ss_dssp             SBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHH
T ss_pred             hCcccccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHHHH
Confidence            9 46789999999999999999999999999999999999999999999998865

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.76  E-value=1.3e-18  Score=147.23  Aligned_cols=121  Identities=16%  Similarity=0.301  Sum_probs=106.6

Q ss_pred             eeceeeeeC-CceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH-hCCCccCCChhhhc-CCC
Q psy2372         227 CAITLMTPR-MKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII-SNRSIVNIDITSAI-QPP  303 (447)
Q Consensus       227 ~V~dvM~pr-~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~-~~~~~~~~~v~~im-~~~  303 (447)
                      +|+|+|+.+ .+++++++++|+.+|+++|.+++++.+||++ + ++++|+++.+|+++... .+......+++++| +++
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~-~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~   80 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-EKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQV   80 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-C-CeEEEEEEccchhhhhhhhcccccceeEeeecccee
Confidence            689999754 4789999999999999999999999999998 3 79999999999987653 33333346789999 577


Q ss_pred             eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      .++.+++++.++++.|.+++.+.+||+| +|+++|+||..|++++++
T Consensus        81 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          81 AYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             CCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             EEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            8999999999999999999999999998 599999999999999876

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.76  E-value=9.3e-19  Score=156.41  Aligned_cols=145  Identities=11%  Similarity=0.130  Sum_probs=121.3

Q ss_pred             chHHHHHHhhhccc-CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC
Q psy2372         210 NKIEYNLASRALKL-DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN  288 (447)
Q Consensus       210 ~~~E~~~i~~~l~l-~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~  288 (447)
                      .+.|+..++.+.+| .+.++.|+|++..++++++.+.++.+|++.|.+++++++||+|++.++++|+++.+|+++.+...
T Consensus         3 ~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~   82 (179)
T d2ooxe1           3 QETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYY   82 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhc
Confidence            45677888888885 88899999999889999999999999999999999999999997668999999999999865321


Q ss_pred             ----CCc-c--------------CCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCC-----CEEEEEeHH
Q psy2372         289 ----RSI-V--------------NIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYG-----ELEGIITIN  343 (447)
Q Consensus       289 ----~~~-~--------------~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G-----~~iGiVT~~  343 (447)
                          ... .              .......| ++++++++++++.+++..|.+++.|.+||+|++|     +++|+||..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~  162 (179)
T d2ooxe1          83 YQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQY  162 (179)
T ss_dssp             HHHCSCGGGGGGGGGSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHH
T ss_pred             cccccchhhhhhhhccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHH
Confidence                000 0              00112234 5778999999999999999999999999999876     599999999


Q ss_pred             HHHHHHhcccc
Q psy2372         344 DIIHSLIGDIS  354 (447)
Q Consensus       344 DIle~i~gei~  354 (447)
                      ||++.+...+.
T Consensus       163 dIlk~l~~~~~  173 (179)
T d2ooxe1         163 RILKFISMNCK  173 (179)
T ss_dssp             HHHHHHHTTCG
T ss_pred             HHHHHHHHhhh
Confidence            99999988773

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=9.9e-19  Score=153.22  Aligned_cols=132  Identities=16%  Similarity=0.199  Sum_probs=110.3

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCcc----------
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIV----------  292 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~----------  292 (447)
                      |.+.++.|+|.+..++++++.++++.+|++.|.+++++++||++++.++++|+++.+|++..........          
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~   89 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEH   89 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGC
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhh
Confidence            3467999999988999999999999999999999999999999876789999999999988764321100          


Q ss_pred             -----CCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEc-CCCCEEEEEeHHHHHHHHhcccc
Q psy2372         293 -----NIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVID-EYGELEGIITINDIIHSLIGDIS  354 (447)
Q Consensus       293 -----~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvD-e~G~~iGiVT~~DIle~i~gei~  354 (447)
                           .....+.| ++++++++++++.+++++|.+++.|.+||+| ++|+++|+||.+||++.+.-.++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~~~~  158 (159)
T d2v8qe2          90 KIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFIT  158 (159)
T ss_dssp             BHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHHHSC
T ss_pred             hcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHHHcC
Confidence                 01123455 4668999999999999999999999999998 57899999999999998865444

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.76  E-value=6.5e-19  Score=148.16  Aligned_cols=120  Identities=16%  Similarity=0.249  Sum_probs=104.1

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH-hCCCccCCChhhhcC-CC
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII-SNRSIVNIDITSAIQ-PP  303 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~-~~~~~~~~~v~~im~-~~  303 (447)
                      ++|+|+|++  +++++++++++.+|++.|.+++++.+||+|++ ++++|+++.+|+++... ++.......++++|+ ++
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~   77 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-DRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSI   77 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-GBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCC
T ss_pred             CCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEecc-chhhhhhhhhhHhhhhhhcCCCcccceEEEEeeccc
Confidence            478999984  67899999999999999999999999999865 89999999999976543 333333356889995 56


Q ss_pred             eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                      .++++++++.++++.|.+++.+.+||+|+ |+++|+||..||++++
T Consensus        78 ~~v~~~~~~~~~~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          78 YYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  122 (123)
T ss_dssp             CCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             eeeeecchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHhhC
Confidence            79999999999999999999999999985 8999999999999864

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1.3e-18  Score=147.28  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=103.4

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHhCC-----CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSS-----YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-  300 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~-----~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-  300 (447)
                      +++.+|+  ++++++++++|+++|++.|++++     .+.+||+|++ ++++|+++.++++...   ..   .++.++| 
T Consensus         2 taG~iM~--~d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~~l~~~~---~~---~~v~~im~   72 (127)
T d2ouxa2           2 TAGAIMT--TEFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISLRDLIVND---DD---TLIADILN   72 (127)
T ss_dssp             BHHHHCB--SCCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEHHHHTTSC---TT---SBHHHHSB
T ss_pred             ChhHhCC--CCcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-CeEEEEEEeecccccc---cc---EEhhhhcc
Confidence            6899998  58889999999999999998874     6899999865 8999999999998643   22   6899999 


Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      ++++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||++.+-
T Consensus        73 ~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          73 ERVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             SCCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999998764

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=2.3e-18  Score=144.15  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=106.1

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCee
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLF  305 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~  305 (447)
                      +|+|+|++  ++.++++++|+.|+++.|.+++++.+||.+ + |+++|+++.+|+++++..+....+.++.++| +++++
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~-~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~   76 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-E-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVT   76 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGE
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEe-C-CcEEEEEEeeeccccccccccccceeEeeeccccccc
Confidence            47899994  778999999999999999999999999997 3 7999999999999988776555457899999 56789


Q ss_pred             eCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         306 IPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       306 V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                      +++++++.+|++.|++++.+.+||+| +|+++|+||..|++++.
T Consensus        77 v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          77 ISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGVISATDILRAK  119 (120)
T ss_dssp             ECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHhcC
Confidence            99999999999999999999999876 69999999999999875

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=1.9e-18  Score=149.08  Aligned_cols=123  Identities=16%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhH-hCCCccCCChhhhc-CCC
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKII-SNRSIVNIDITSAI-QPP  303 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~-~~~~~~~~~v~~im-~~~  303 (447)
                      ++|+|+|++  ++.++++++++.+|++.|.+++++.+||+|++ ++++|+++.+|+++... .+......+++++| +++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~   79 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-GNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   79 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-SCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccC-CcccceEEeechhhhhhhhccccccccccccccccc
Confidence            579999984  67899999999999999999999999999865 89999999999987654 33333346789999 578


Q ss_pred             eeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         304 LFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       304 ~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      +++++++++.++++.|.+++.+.+||+|++|+++|+||..||++.+..
T Consensus        80 ~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l~Giit~~Dil~~l~~  127 (142)
T d1pvma4          80 PKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR  127 (142)
T ss_dssp             CEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSCH
T ss_pred             ccccchhhHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHHHHhh
Confidence            899999999999999999999999999999999999999999997654

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=5.7e-18  Score=144.10  Aligned_cols=124  Identities=11%  Similarity=0.212  Sum_probs=110.0

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~  304 (447)
                      .+|+++|+  +++.++++++|+.++++.|.+++++.+||+|++ ++++|+++.+|+++....+....+.+++++| +++.
T Consensus         5 ~pV~~im~--~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~~   81 (132)
T d2yzia1           5 APIKVYMT--KKLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-GNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNLI   81 (132)
T ss_dssp             SBGGGTCB--CCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSCC
T ss_pred             CcHHHHcC--CCCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-ceeeeeeeHHHHHHHHhhccCccceeEeeccccccc
Confidence            47999998  578899999999999999999999999999865 8999999999999877655444457899999 5678


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      ++++++++.++++.|.+++.+.+||+| +|+++|+||..|+++.+..++
T Consensus        82 ~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~vGivt~~Dil~a~~~~l  129 (132)
T d2yzia1          82 TANVNTPLGEVLRKMAEHRIKHILIEE-EGKIVGIFTLSDLLEASRRRL  129 (132)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHCCS
T ss_pred             ccCcchHHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHHH
Confidence            999999999999999999999998765 699999999999999987654

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.74  E-value=3.2e-18  Score=149.45  Aligned_cols=125  Identities=16%  Similarity=0.206  Sum_probs=107.4

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC-------------
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR-------------  289 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~-------------  289 (447)
                      +++.+++++|+  ++++++++++++.+|++.|.+++++++||+|++ |+++|+++..|+++......             
T Consensus         1 ~~~~~v~~~m~--r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~   77 (156)
T d2yzqa1           1 YKGVEIEPYYQ--RYVSIVWEGTPLKAALKALLLSNSMALPVVDSE-GNLVGIVDETDLLRDSEIVRIMKSTELAASSEE   77 (156)
T ss_dssp             GGGCBSTTTSB--SCCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-SCEEEEEEGGGGGGCGGGCC-------------
T ss_pred             CCCCCHHHHhc--CCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-CCceeEEeeeechhhhcccccccccccccchhh
Confidence            45789999998  578999999999999999999999999999865 89999999999976432100             


Q ss_pred             -----------------CccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         290 -----------------SIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       290 -----------------~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                                       ...+.++.++| +++.++++++++.++.+.|.+++.+.+||+|++|+++|+||++||++.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~l~  156 (156)
T d2yzqa1          78 EWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV  156 (156)
T ss_dssp             -------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGC
T ss_pred             hhhhhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHHhC
Confidence                             01234678898 46789999999999999999999999999999999999999999998764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.74  E-value=3.7e-18  Score=146.56  Aligned_cols=123  Identities=14%  Similarity=0.110  Sum_probs=107.3

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCC--------CccCCChh
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNR--------SIVNIDIT  297 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~--------~~~~~~v~  297 (447)
                      .+|+|+|++  ++.++++++++.+|++.|.+++++++||+|++ ++++|+++.+|+++......        ...+.++.
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~   78 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-KKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF   78 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-ccccccccHHHHHHHHHhhhhhhhcccccccccchh
Confidence            479999996  66799999999999999999999999999865 89999999999998764321        11235789


Q ss_pred             hhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         298 SAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       298 ~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      ++| +++.++++++++.++++.|.+++.+.+||+|+ |+++|+||..||++.+...
T Consensus        79 ~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~lvGiit~~Dil~~~~~~  133 (139)
T d2o16a3          79 EVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAINL  133 (139)
T ss_dssp             HHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHHH
T ss_pred             HhhccccccccccchHHHHHHHHHHcCceEEEEEEC-CEEEEEEEHHHHHHHHHHH
Confidence            999 56789999999999999999999999999985 9999999999999998764

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.73  E-value=1.1e-18  Score=150.97  Aligned_cols=118  Identities=19%  Similarity=0.274  Sum_probs=105.1

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHhCC-----CcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcC
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSS-----YNYFPVYKKSISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ  301 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~-----~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~  301 (447)
                      +|+++|++  +++++++++|+.||++.|++++     .+.+||+|++ ++++|+++.+|+++...   .   .++.++|+
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~~~dl~~~~~---~---~~v~~im~   72 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSLRDLIVADP---R---TRVAEIMN   72 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCBHHHHTTSCT---T---CBSTTTSB
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-CCEecccchhhhhhccc---c---cchHHhcc
Confidence            68999995  7889999999999999998875     6788999865 89999999999987532   2   67899995


Q ss_pred             -CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         302 -PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       302 -~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                       ++.++++++++.+|++.|.+++.+.+||+|++|+++|+||.+|+++.+..+.
T Consensus        73 ~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~e~  125 (144)
T d2yvxa2          73 PKVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEAEA  125 (144)
T ss_dssp             SSCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHHHH
T ss_pred             cCCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHHHh
Confidence             6789999999999999999999999999999999999999999999886654

>d2p3ha1 d.145.1.4 (A:5-102) Uncharacterized protein Cgl1194/Cg1349 {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: CorC/HlyC domain-like
domain: Uncharacterized protein Cgl1194/Cg1349
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=99.73  E-value=1e-17  Score=134.63  Aligned_cols=80  Identities=18%  Similarity=0.415  Sum_probs=73.7

Q ss_pred             ceEEecCCeEEEeccCCHHHHHHHhCCCCCCCCcCCCCcccHhHHHHhhcCCCCCCCcEEEEc-----------------
Q psy2372         360 EIEFCEDGSWIISASMTFDRFKELLSNQVNFPVKISRNYHTLAGFVMTFLGHIPKISENFIWK-----------------  422 (447)
Q Consensus       360 ~~~~~~~~~~~v~g~~~i~~~~~~l~~~~~l~~~~~~~~~Tl~G~i~~~lg~iP~~g~~~~~~-----------------  422 (447)
                      .+.+.++|+|+++|+++++|+++.||++  +|+   ++|+|+|||+++++|++|++||+++++                 
T Consensus         2 ~I~~~~~~~~~v~G~~~l~dl~~~l~~~--l~~---~~~~Tl~G~~~~~lg~iP~~Ge~v~i~~~~~~~~~~~~~~~~~R   76 (98)
T d2p3ha1           2 DITETSPDKWLIDGDTPLDEVERAIGYE--LPE---GDYETISGLLFDHANALLKTGDVIEIPLDFEPEDYLNNTSPTQR   76 (98)
T ss_dssp             CEEEEETTEEEEETTCBHHHHHHHHTSC--CCC---SSCCBHHHHHHHHHCSCCCTTCEEEEECCCCGGGGTTCSSCCCC
T ss_pred             CcEEeCCCEEEEEeccCHHHHHHHHCCC--CCC---CCccCHHHHHHHHHCcCCCCCCEEEEecCCCceeEEEecCCcce
Confidence            5788999999999999999999999999  983   479999999999999999999999986                 


Q ss_pred             CEEEEEEEeecCeeeEEEEEec
Q psy2372         423 NIKIEVIDMNNNKIERLLVTIL  444 (447)
Q Consensus       423 ~~~f~v~~~~~~ri~~v~v~~~  444 (447)
                      .++++|.+++++|+.+|+++.+
T Consensus        77 ~~rv~V~~~~~~~~~~v~~~~~   98 (98)
T d2p3ha1          77 ILRITVLEVERNVPVKLALALL   98 (98)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEecCccccEEEEEEC
Confidence            6899999999999999998753

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.72  E-value=2.1e-17  Score=144.16  Aligned_cols=125  Identities=18%  Similarity=0.231  Sum_probs=105.5

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC-CCeEEEEEEhhhHHHHhHhCCC------------
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKS-ISKIIGTLNTKTLFKKIISNRS------------  290 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~-~~~ivGiv~~~DLl~~~~~~~~------------  290 (447)
                      .+++|+|+|+  +++.++++++|+.|+++.|.+++++.+||++++ .+.++|+++..|+++.+.....            
T Consensus         9 ~~~~V~diM~--~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~   86 (160)
T d2d4za3           9 YNIQVGDIMV--RDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLT   86 (160)
T ss_dssp             SSCBTTSSSB--SSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCB
T ss_pred             cceEHHHhcC--CCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhccc
Confidence            4679999999  478899999999999999999999999999853 4689999999999886642100            


Q ss_pred             -------------ccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         291 -------------IVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       291 -------------~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                                   .....+.++| +++.++++++++.++++.|.+++.+.+||+| +|+++|+||++||+++|.|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~g  160 (160)
T d2d4za3          87 LEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIEG  160 (160)
T ss_dssp             HHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             cchhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhCC
Confidence                         0012244566 5678999999999999999999999999998 5999999999999999976

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.72  E-value=2.4e-17  Score=141.97  Aligned_cols=123  Identities=18%  Similarity=0.270  Sum_probs=106.3

Q ss_pred             eeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhC---------------CCc
Q psy2372         227 CAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISN---------------RSI  291 (447)
Q Consensus       227 ~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~---------------~~~  291 (447)
                      .+.++|+  ++.+++++++++.++++.|.+++++++||+|++ ++++|+++.+|+++.....               ...
T Consensus         5 ~v~~~m~--~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   81 (145)
T d1o50a3           5 DVCKLIS--LKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-NKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRL   81 (145)
T ss_dssp             HHTTSSC--CCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-TEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCC
T ss_pred             EhHHhCC--CCCEEECCcCcHHHHHHHHHHcCCceEEEeccC-cceeeeeccchhhhhhhcccccccchhHHHHhhhhhc
Confidence            4677887  466799999999999999999999999999865 8999999999998765321               011


Q ss_pred             cCCChhhhcCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         292 VNIDITSAIQPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       292 ~~~~v~~im~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      ....+.++|+++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..||++.+..+
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~~~  142 (145)
T d1o50a3          82 IAKNASEIMLDPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWKG  142 (145)
T ss_dssp             SSCBHHHHCBCCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHS
T ss_pred             cccCHHHHcCCCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHhc
Confidence            2245778888889999999999999999999999999999999999999999999998754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.72  E-value=2.5e-17  Score=143.58  Aligned_cols=126  Identities=13%  Similarity=0.212  Sum_probs=106.6

Q ss_pred             eeceeeee-CCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC-ccCCChhhhc----
Q psy2372         227 CAITLMTP-RMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS-IVNIDITSAI----  300 (447)
Q Consensus       227 ~V~dvM~p-r~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~-~~~~~v~~im----  300 (447)
                      .+++++.+ +++++++++++|+.+|++.|.+++++.+||+|++ ++++|+++.+|+++....... ....++.++|    
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~   80 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-GTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRP   80 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG-GBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc-ceEEEEEEeeeeeehhccccccccccchhhheeeee
Confidence            45666654 4688999999999999999999999999999865 899999999999987754321 1124566665    


Q ss_pred             ---CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         301 ---QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       301 ---~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                         .+..++++++++.++++.|.+++.+.+||+|++|+++|+||+.|+++.++++.
T Consensus        81 ~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~~~  136 (153)
T d2ooxe2          81 ANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIYDK  136 (153)
T ss_dssp             CCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHSCT
T ss_pred             cccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHcCc
Confidence               23468999999999999999999999999999999999999999999998754

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.71  E-value=2e-17  Score=140.13  Aligned_cols=121  Identities=10%  Similarity=0.189  Sum_probs=105.2

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeC-CCCeEEEEEEhhhHHHHhHhCCCccCCChhhhcCCCe
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKK-SISKIIGTLNTKTLFKKIISNRSIVNIDITSAIQPPL  304 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~-~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~~~~  304 (447)
                      ++|+|+|+  ++++++++++|+.|+++.|.+++++.+||++. +.++++|+++..|+++...++... .......+++++
T Consensus         1 ~~V~dim~--~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~-~~~~~~~~~~~~   77 (131)
T d2riha1           1 IRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDL-DGPAMPIANSPI   77 (131)
T ss_dssp             CBGGGGCC--SCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCT-TSBSGGGCBCCC
T ss_pred             CCHHHhcc--CCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccccccccc-ccccccccccce
Confidence            47899998  47789999999999999999999999999953 247899999999999987654432 234455567889


Q ss_pred             eeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHH
Q psy2372         305 FIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSL  349 (447)
Q Consensus       305 ~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i  349 (447)
                      ++.+++++.+++++|.+++.+.+||+|++|+++|+||..|+++++
T Consensus        78 ~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          78 TVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             EEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSCH
T ss_pred             eEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHHH
Confidence            999999999999999999999999999999999999999999764

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.71  E-value=3e-17  Score=138.47  Aligned_cols=111  Identities=14%  Similarity=0.113  Sum_probs=95.3

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCC-CCeEEEEEEhhhHHHHhHhCCCccCCChhhhc-CCCeeeCCCCCHHH
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKKS-ISKIIGTLNTKTLFKKIISNRSIVNIDITSAI-QPPLFIPETISTMQ  314 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~-~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im-~~~~~V~~~~~l~~  314 (447)
                      +.+++++++|+.+|++.|.+++++++||+|+. .++++|+++.+|+++....+.    .....++ +++.+++++.++.+
T Consensus         6 dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~   81 (126)
T d1zfja4           6 DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNA----PISEHMTSEHLVTAAVGTDLET   81 (126)
T ss_dssp             SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSSS----BTTTSCCCSCCCCEETTCCHHH
T ss_pred             CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccCC----ceeeeeeccceeecCCCCCHHH
Confidence            55689999999999999999999999999852 478999999999987654322    2233344 46679999999999


Q ss_pred             HHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         315 LLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       315 al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      ++++|.+++.+.+||+|++|+++|+||+.|+++.+-.
T Consensus        82 a~~~m~~~~~~~lpVVd~~g~lvGiiT~~Dil~~~~~  118 (126)
T d1zfja4          82 AERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  118 (126)
T ss_dssp             HHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             HHHHHHhcCCcEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            9999999999999999999999999999999998764

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=3e-17  Score=139.70  Aligned_cols=120  Identities=19%  Similarity=0.201  Sum_probs=104.4

Q ss_pred             eeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC----------ccCCC
Q psy2372         226 QCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS----------IVNID  295 (447)
Q Consensus       226 ~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~----------~~~~~  295 (447)
                      ++|+++|++  ++.++++++++.+|++.|.+++++++||+|   ++++|+++..|+++.......          ..+.+
T Consensus         1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d---~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (135)
T d3ddja2           1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVAN---EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTP   75 (135)
T ss_dssp             SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEES---SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSB
T ss_pred             CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEe---cceeceeeccchhhhhccccccchhhhhccccccCC
Confidence            468999996  566899999999999999999999999996   479999999999987643211          12357


Q ss_pred             hhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         296 ITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       296 v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                      ++++| +++.++++++++.++++.|.+++.+.+||+|++|+++|+||..|+++.+-
T Consensus        76 v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          76 IIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             GGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             HHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            88999 57789999999999999999999999999999999999999999998753

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=7.7e-17  Score=138.22  Aligned_cols=124  Identities=11%  Similarity=0.225  Sum_probs=100.0

Q ss_pred             eeecee-eeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCCc-cCCChhhhc---
Q psy2372         226 QCAITL-MTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRSI-VNIDITSAI---  300 (447)
Q Consensus       226 ~~V~dv-M~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~~-~~~~v~~im---  300 (447)
                      ++++++ +.+..++++++.++++.+|++.|.+++++++||+|++ ++++|+++.+|+++........ ....+.+.+   
T Consensus         6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~   84 (140)
T d2nyca1           6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-GYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRR   84 (140)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHC
T ss_pred             CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-CeEcceehhhHHHHHHhhccccccccchhhhhhhh
Confidence            455654 2334788999999999999999999999999999855 7999999999999987653221 112222222   


Q ss_pred             ----CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHh
Q psy2372         301 ----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLI  350 (447)
Q Consensus       301 ----~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~  350 (447)
                          .+++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|+++.++
T Consensus        85 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          85 SDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             C------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence                45679999999999999999999999999999999999999999999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.8e-16  Score=136.52  Aligned_cols=125  Identities=12%  Similarity=0.196  Sum_probs=103.7

Q ss_pred             eeeceeeee-CCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHhCCC-ccCCChhhh----
Q psy2372         226 QCAITLMTP-RMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIISNRS-IVNIDITSA----  299 (447)
Q Consensus       226 ~~V~dvM~p-r~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~~~~-~~~~~v~~i----  299 (447)
                      .++++++.+ .++++++++++|+.||++.|.+++++.+||+|++ ++++|+++..|+++.+..+.. ..+.++.+.    
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~   87 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-GRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHR   87 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-SBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGC
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-CceEEEEEcchhhhhhhcccccchhhhhhhccchh
Confidence            456666543 2578899999999999999999999999999854 899999999999988765321 112333333    


Q ss_pred             --c-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         300 --I-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       300 --m-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                        | .++.++++++++.++++.|.+++.+.+||+|++|+++|+||..||++.++-
T Consensus        88 ~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1          88 SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHS
T ss_pred             hhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHh
Confidence              2 456789999999999999999999999999999999999999999999874

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.6e-16  Score=139.21  Aligned_cols=125  Identities=21%  Similarity=0.341  Sum_probs=103.0

Q ss_pred             eeeceeeeeCCce----EEEcCCCCHHHHHHHHHhCCCcEEEEEeC-CCCeEEEEEEhhhHHHHhHhCC-----------
Q psy2372         226 QCAITLMTPRMKV----NFINIDDNIEKNLIKILDSSYNYFPVYKK-SISKIIGTLNTKTLFKKIISNR-----------  289 (447)
Q Consensus       226 ~~V~dvM~pr~~v----~~v~~~~tl~e~~~~~~~~~~s~iPV~~~-~~~~ivGiv~~~DLl~~~~~~~-----------  289 (447)
                      ..++|+|.|+...    +.++.+.|++|+.++|.+++++++||+++ +.++++|+++.+|++..+....           
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~   82 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSI   82 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCE
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchh
Confidence            4688999987532    45677889999999999999999999953 3478999999999998764210           


Q ss_pred             -------------CccCCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         290 -------------SIVNIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       290 -------------~~~~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                                   .....+++++| +++.++++++++.++++.|.+++.+.+||+| +|+++|+||+.|+++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          83 IYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             EECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             hhhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence                         00123478888 5678999999999999999999999999886 6999999999999998865

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.63  E-value=1.3e-17  Score=139.59  Aligned_cols=109  Identities=13%  Similarity=0.185  Sum_probs=57.7

Q ss_pred             ceEEEcCCCCHHHHHHHHHhCCCcEEEEEeC--CCCeEEEEEEhhhHHHHhHhCCCccCCChhhhc--C-CCeeeCCCCC
Q psy2372         237 KVNFINIDDNIEKNLIKILDSSYNYFPVYKK--SISKIIGTLNTKTLFKKIISNRSIVNIDITSAI--Q-PPLFIPETIS  311 (447)
Q Consensus       237 ~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~--~~~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im--~-~~~~V~~~~~  311 (447)
                      +.+++++++|+.||++.|.+++++++||+|+  ..++++|+++.+|+......+..   .....+|  + ++.+++++++
T Consensus         5 ~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~   81 (120)
T d1jr1a4           5 DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEEEHD---RFLEEIMTKREDLVVAPAGIT   81 (120)
T ss_dssp             TTCC----CCCC--CCBC---------------CTTCCC-------------------------CCSBTTTSCCEETTCC
T ss_pred             CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhccccC---ceeEEEEeeccCceEECCCCC
Confidence            4568999999999999999999999999985  24799999999998755433322   4455554  3 4679999999


Q ss_pred             HHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         312 TMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       312 l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      +.+|++.|++++.+.+||+|++|+++|+||+.|+++.
T Consensus        82 ~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          82 LKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             HHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            9999999999999999999999999999999999976

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.54  E-value=2e-07  Score=77.52  Aligned_cols=89  Identities=16%  Similarity=0.119  Sum_probs=69.4

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEE
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWI  370 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~  370 (447)
                      .+++++| +++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++..+..+- +.+ .-..+.  ..+...
T Consensus         5 ~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im--~~~~~~   82 (132)
T d2yzia1           5 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIM--TRNLIT   82 (132)
T ss_dssp             SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTC--BCSCCE
T ss_pred             CcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeecc--cccccc
Confidence            5799999 67889999999999999999999999999999999999999999999887543 222 111111  223456


Q ss_pred             EeccCCHHHHHHHh
Q psy2372         371 ISASMTFDRFKELL  384 (447)
Q Consensus       371 v~g~~~i~~~~~~l  384 (447)
                      ++...++.++.+.+
T Consensus        83 v~~~~~~~~~~~~m   96 (132)
T d2yzia1          83 ANVNTPLGEVLRKM   96 (132)
T ss_dssp             EETTSBHHHHHHHH
T ss_pred             cCcchHHHHHHHHH
Confidence            77778888865543

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.51  E-value=5.3e-08  Score=80.13  Aligned_cols=88  Identities=10%  Similarity=0.160  Sum_probs=66.1

Q ss_pred             Chhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc--cccceEEecCCeEE
Q psy2372         295 DITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS--YQEEIEFCEDGSWI  370 (447)
Q Consensus       295 ~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~--~~~~~~~~~~~~~~  370 (447)
                      +++|+| +++.++++++++.+|++.|++++.+.+||+|++|+++|++|..|++...+.+- +..  .-..+  ..++...
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~i--m~~~~~~   79 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGEL--ARDSIYY   79 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHH--HTTCCCC
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEE--eecccee
Confidence            688999 57889999999999999999999999999999999999999999988765432 211  11111  1233345


Q ss_pred             EeccCCHHHHHHHh
Q psy2372         371 ISASMTFDRFKELL  384 (447)
Q Consensus       371 v~g~~~i~~~~~~l  384 (447)
                      ++...++.+..+.+
T Consensus        80 v~~~~~~~~~~~~m   93 (123)
T d1y5ha3          80 VDANASIQEMLNVM   93 (123)
T ss_dssp             EETTCCHHHHHHHH
T ss_pred             eeecchHHHHHHHH
Confidence            67777777765554

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.44  E-value=2.9e-07  Score=77.17  Aligned_cols=60  Identities=13%  Similarity=0.209  Sum_probs=55.0

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      .+++|+| +++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++..+....
T Consensus         2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~   62 (139)
T d2o16a3           2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSL   62 (139)
T ss_dssp             CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHC
T ss_pred             EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhh
Confidence            4688999 67889999999999999999999999999999999999999999998886654

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.43  E-value=3.5e-07  Score=77.05  Aligned_cols=89  Identities=10%  Similarity=0.085  Sum_probs=70.4

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cc-c-cccceEEecCCeE
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SN-S-YQEEIEFCEDGSW  369 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e-~-~~~~~~~~~~~~~  369 (447)
                      .+++++| +++.++++++++.+|++.|.+++.+.+||+|++|+++|++|..|++..+...- +. . .-..+.  ..+..
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im--~~~~~   80 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVM--RKPIP   80 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTS--BSSCC
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccc--ccccc
Confidence            4688999 46889999999999999999999999999999999999999999998876432 21 1 111111  24456


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .++...++.+..+.+
T Consensus        81 ~v~~~~~l~~~~~~m   95 (142)
T d1pvma4          81 KVKSDYDVKDVAAYL   95 (142)
T ss_dssp             EEETTCBHHHHHHHH
T ss_pred             cccchhhHHHHHHHH
Confidence            788889999987664

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=2.7e-07  Score=76.60  Aligned_cols=91  Identities=14%  Similarity=0.038  Sum_probs=70.5

Q ss_pred             CChhhhc---CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cc--c-cccceEE-ec
Q psy2372         294 IDITSAI---QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SN--S-YQEEIEF-CE  365 (447)
Q Consensus       294 ~~v~~im---~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e--~-~~~~~~~-~~  365 (447)
                      .+++++|   ++..+++++.++.+|++.|.+++.+.+||+|++|+++|++|..|+++.+.+.. ..  . ....+.+ ..
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~   81 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVML   81 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSB
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhcccccccccccccccccccc
Confidence            5789998   46789999999999999999999999999999999999999999999998754 22  1 1111110 12


Q ss_pred             CCeEEEeccCCHHHHHHHh
Q psy2372         366 DGSWIISASMTFDRFKELL  384 (447)
Q Consensus       366 ~~~~~v~g~~~i~~~~~~l  384 (447)
                      ...+.++...++.++.+.+
T Consensus        82 ~~~~~v~~~~~l~~~~~~~  100 (132)
T d1yava3          82 TDIPRLHINDPIMKGFGMV  100 (132)
T ss_dssp             CSCCEEETTSBHHHHHHHT
T ss_pred             ccccccccchhHHHHHHHH
Confidence            3445678888888877665

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.36  E-value=1.5e-07  Score=77.85  Aligned_cols=62  Identities=18%  Similarity=0.280  Sum_probs=55.2

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      -.+.+++++|++  ++.++++++++.++.+.|.+++...+||+|++ |+++|+|+.+|+++.+.+
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~-g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-DHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-CBEEEEEEHHHHHHHHHH
T ss_pred             cccEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCC-CEEEEEEEHHHHHHHHHH
Confidence            356789999984  56689999999999999999999999999865 899999999999987754

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.31  E-value=1.3e-06  Score=71.83  Aligned_cols=88  Identities=14%  Similarity=0.148  Sum_probs=68.3

Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccccccceEEecCCeEEE
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNSYQEEIEFCEDGSWII  371 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~~~~~~~~~~~~~~~v  371 (447)
                      ..++++|+ +++++++++++.+|++.|++++.+.+||+|+ |+++|+||..|+++.+..+. .+..-..+.  ..+...+
T Consensus         4 ~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~--~~~~~~v   80 (127)
T d2ef7a1           4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG-NKPVGIITERDIVKAIGKGKSLETKAEEFM--TASLITI   80 (127)
T ss_dssp             CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTS--EECCCCE
T ss_pred             cCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc-cchhhhcchhHHHHHHHhhccccchhhhhh--hhhcccc
Confidence            57899994 6779999999999999999999999999985 89999999999999987655 222111111  1133457


Q ss_pred             eccCCHHHHHHHh
Q psy2372         372 SASMTFDRFKELL  384 (447)
Q Consensus       372 ~g~~~i~~~~~~l  384 (447)
                      +...++.+..+.+
T Consensus        81 ~~~~~l~~~~~~m   93 (127)
T d2ef7a1          81 REDSPITGALALM   93 (127)
T ss_dssp             ETTSBHHHHHHHH
T ss_pred             ccccchhHHHHHH
Confidence            8888888877665

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.28  E-value=6.5e-07  Score=73.06  Aligned_cols=87  Identities=22%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             ChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeEEE
Q psy2372         295 DITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSWII  371 (447)
Q Consensus       295 ~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~~v  371 (447)
                      +++++|+ ++.++++++++.+|++.|++++.+.+||+|+ |+++|+||..|+++.+.... ..+ .-..+.  ..+...+
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~-~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m--~~~~~~v   77 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE-GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVM--ERDLVTI   77 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET-TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHC--BCGGGEE
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC-CcEEEEEEeeeccccccccccccceeEeeec--ccccccc
Confidence            3788994 6789999999999999999999999998875 99999999999999887643 111 101111  1233456


Q ss_pred             eccCCHHHHHHHh
Q psy2372         372 SASMTFDRFKELL  384 (447)
Q Consensus       372 ~g~~~i~~~~~~l  384 (447)
                      +...++.+..+.+
T Consensus        78 ~~~~~l~~a~~~m   90 (120)
T d1pbja3          78 SPRATIKEAAEKM   90 (120)
T ss_dssp             CTTSCHHHHHHHH
T ss_pred             cchhHHHHHHHHH
Confidence            7777777765544

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.25  E-value=4e-07  Score=77.56  Aligned_cols=58  Identities=19%  Similarity=0.179  Sum_probs=53.7

Q ss_pred             CChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         294 IDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       294 ~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      .++.++| +++.++++++++.+|++.|++++...+||+|++|+++|+||..|++.....
T Consensus         4 ~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~   62 (156)
T d2yzqa1           4 VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI   62 (156)
T ss_dssp             CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGG
T ss_pred             CCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcc
Confidence            6789999 688999999999999999999999999999999999999999999876554

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.23  E-value=2.8e-07  Score=75.41  Aligned_cols=59  Identities=14%  Similarity=0.189  Sum_probs=46.8

Q ss_pred             ceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHH
Q psy2372         225 DQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKK  284 (447)
Q Consensus       225 ~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~  284 (447)
                      +..+.++|+.+.+++++++++++.+|.++|.+++.+++||+|++ ++++|+++.+|+++.
T Consensus        60 ~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~-~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          60 DRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-DELVAIIARTDLKKN  118 (120)
T ss_dssp             ------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETT-TEEEEEECHHHHHHH
T ss_pred             CceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCC-CEEEEEEEHHHhhhc
Confidence            56788888888889999999999999999999999999999965 899999999999975

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.19  E-value=5.4e-07  Score=74.80  Aligned_cols=61  Identities=13%  Similarity=0.191  Sum_probs=54.3

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      .+.+++++|++  ++.++++++++.++++.|.+++.+++||+|++ |+++|+|+.+|+++...+
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-g~lvGiit~~Dil~~~~~  132 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-DKPVGIVTEREFLLLYKD  132 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHGGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCC-CEEEEEEEHHHHHHHHHH
Confidence            35689999985  66799999999999999999999999999865 899999999999997643

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.18  E-value=2.8e-06  Score=69.96  Aligned_cols=86  Identities=14%  Similarity=0.257  Sum_probs=65.8

Q ss_pred             Chhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEE--cCCCCEEEEEeHHHHHHHHhccc-ccc-cccceEEecCCeE
Q psy2372         295 DITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVI--DEYGELEGIITINDIIHSLIGDI-SNS-YQEEIEFCEDGSW  369 (447)
Q Consensus       295 ~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~Vv--De~G~~iGiVT~~DIle~i~gei-~e~-~~~~~~~~~~~~~  369 (447)
                      +++++| ++++++++++++.+|++.|++++.+..||+  |+.|+++|++|..|+...+.++. ... ....    .....
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~~~~~~~~~----~~~~~   77 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPI----ANSPI   77 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGG----CBCCC
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccccccccccc----cccce
Confidence            578999 577899999999999999999999999999  56689999999999999887765 322 1111    12234


Q ss_pred             EEeccCCHHHHHHHh
Q psy2372         370 IISASMTFDRFKELL  384 (447)
Q Consensus       370 ~v~g~~~i~~~~~~l  384 (447)
                      .+.-..++.+..+.+
T Consensus        78 ~v~~~~~~~~a~~~m   92 (131)
T d2riha1          78 TVLDTDPVHVAAEKM   92 (131)
T ss_dssp             EEETTSBHHHHHHHH
T ss_pred             eEeeecchHHHHHHH
Confidence            566677777766554

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.17  E-value=1.1e-06  Score=74.09  Aligned_cols=62  Identities=16%  Similarity=0.356  Sum_probs=55.3

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      ..+..++++|++  +++++++++++.+|++.|.+++..++||+|++ |+++|+|+.+|+++.+.+
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~-g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-GRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSS-CBEEEEEEHHHHHHHHHH
T ss_pred             ccccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeEC-CEEEEEEEHHHHHHHHHH
Confidence            346789999984  67789999999999999999999999999965 899999999999988754

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.16  E-value=1.4e-06  Score=71.68  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=49.6

Q ss_pred             Chhhhc----CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhc
Q psy2372         295 DITSAI----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIG  351 (447)
Q Consensus       295 ~v~~im----~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~g  351 (447)
                      +++++|    ++++++++++++.+|+++|++++.+.+||+| +|+++|++|..|++..+.-
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~   62 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYL   62 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGG
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhh
Confidence            467777    3678999999999999999999999999998 5999999999999987653

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.09  E-value=2e-06  Score=70.27  Aligned_cols=62  Identities=18%  Similarity=0.320  Sum_probs=49.8

Q ss_pred             cCceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         223 LDDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       223 l~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      ..+..++++|.+  ++.++++++++.++++.|.+++.+++||+|++ ++++|+++.+|++++...
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~-~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSK-GKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTT-SCEEEEEEHHHHHHHTTT
T ss_pred             hcccchhhcccc--ceeecchhhHHHHHHHHHHHcCcEEEEEEeCC-CEEEEEEEHHHHHHHHHh
Confidence            345678999984  66799999999999999999999999999865 899999999999987654

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=4.6e-06  Score=69.57  Aligned_cols=84  Identities=13%  Similarity=0.169  Sum_probs=61.3

Q ss_pred             CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cc-c-c--ccc--eEEecCCeEEEec
Q psy2372         301 QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SN-S-Y--QEE--IEFCEDGSWIISA  373 (447)
Q Consensus       301 ~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e-~-~--~~~--~~~~~~~~~~v~g  373 (447)
                      .++.++.+++++.+|++.|.+++...+||+|++|+++|++|..|++..+.... .. . .  +..  .....+..+.++.
T Consensus        17 ~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   96 (140)
T d2nyca1          17 DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTK   96 (140)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECT
T ss_pred             CCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhcccccEEECC
Confidence            46789999999999999999999999999999999999999999999987754 22 1 1  100  0111234567888


Q ss_pred             cCCHHHHHHHh
Q psy2372         374 SMTFDRFKELL  384 (447)
Q Consensus       374 ~~~i~~~~~~l  384 (447)
                      +.++.+..+.+
T Consensus        97 ~~~l~~~~~~~  107 (140)
T d2nyca1          97 NDKLSTIMDNI  107 (140)
T ss_dssp             TSBHHHHHHHH
T ss_pred             CCcHHHHHHHH
Confidence            88888876544

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=2.6e-06  Score=69.38  Aligned_cols=84  Identities=12%  Similarity=0.192  Sum_probs=63.5

Q ss_pred             Chhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcccccccccceEEecCCeEEEec
Q psy2372         295 DITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDISNSYQEEIEFCEDGSWIISA  373 (447)
Q Consensus       295 ~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei~e~~~~~~~~~~~~~~~v~g  373 (447)
                      .++++| ++++++++++++.++++.|++++.+.+||+|++|+++|++|..|++......   . -..+.  ..+.+.++.
T Consensus         2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~~~~---~-v~~~~--~~~~~~v~~   75 (121)
T d1vr9a3           2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDLDS---S-VFNKV--SLPDFFVHE   75 (121)
T ss_dssp             BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCTTS---B-SGGGC--BCTTCCEET
T ss_pred             CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhhccc---c-ccccc--cCccEEECC
Confidence            467888 6788999999999999999999999999999999999999999997532211   1 00111  123345788


Q ss_pred             cCCHHHHHHHh
Q psy2372         374 SMTFDRFKELL  384 (447)
Q Consensus       374 ~~~i~~~~~~l  384 (447)
                      ..++.+..+.+
T Consensus        76 ~~~l~~~~~~~   86 (121)
T d1vr9a3          76 EDNITHALLLF   86 (121)
T ss_dssp             TSBHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence            88888876554

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.05  E-value=3.2e-06  Score=70.79  Aligned_cols=58  Identities=10%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             hhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc
Q psy2372         296 ITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI  353 (447)
Q Consensus       296 v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei  353 (447)
                      +.++| ++|.++++++++.+|++.|.+++.+.+||+|+.|+++|+||..|++..+....
T Consensus         6 v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~   64 (145)
T d1o50a3           6 VCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHF   64 (145)
T ss_dssp             HTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHH
T ss_pred             hHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhccc
Confidence            55667 57789999999999999999999999999999999999999999998876543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.05  E-value=3.5e-06  Score=69.10  Aligned_cols=51  Identities=20%  Similarity=0.236  Sum_probs=46.1

Q ss_pred             cCCCeeeCCCCCHHHHHHHHHHcCCceEEEEcC--CCCEEEEEeHHHHHHHHh
Q psy2372         300 IQPPLFIPETISTMQLLETFKKNKSELSLVIDE--YGELEGIITINDIIHSLI  350 (447)
Q Consensus       300 m~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe--~G~~iGiVT~~DIle~i~  350 (447)
                      +++|.++++++++.+|++.|.+++.+.+||+|+  +|+++|+||..|+.....
T Consensus         4 i~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~   56 (126)
T d1zfja4           4 IIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD   56 (126)
T ss_dssp             SSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC
T ss_pred             EeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc
Confidence            467889999999999999999999999999997  688999999999987543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.03  E-value=4.1e-06  Score=69.71  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=53.7

Q ss_pred             CChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhcc
Q psy2372         294 IDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       294 ~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~ge  352 (447)
                      .+++++|+ ++.++++++++.+|++.|++++.+.+||+|+++++.|++|..|++..+...
T Consensus         2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~   61 (141)
T d3ddja1           2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKA   61 (141)
T ss_dssp             CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHH
T ss_pred             EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhcc
Confidence            46899995 578999999999999999999999999999999999999999999887643

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.98  E-value=8.1e-06  Score=69.12  Aligned_cols=90  Identities=12%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             Chhhhc----CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cc-c-cccce----EE
Q psy2372         295 DITSAI----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SN-S-YQEEI----EF  363 (447)
Q Consensus       295 ~v~~im----~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e-~-~~~~~----~~  363 (447)
                      ++++++    +++.++.+++++.+|++.|.+++...+||+|++|+++|++|..|++..+.... +. + .-..+    ..
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~   81 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPA   81 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeec
Confidence            355554    36889999999999999999999999999999999999999999999887543 22 1 10000    01


Q ss_pred             ecCCeEEEeccCCHHHHHHHh
Q psy2372         364 CEDGSWIISASMTFDRFKELL  384 (447)
Q Consensus       364 ~~~~~~~v~g~~~i~~~~~~l  384 (447)
                      ...+.+.++.+.++.+..+.+
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m  102 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAI  102 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHH
T ss_pred             ccCCCeEECCCCcHHHHHHhh
Confidence            124446678888888876554

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=5.7e-06  Score=69.30  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=66.2

Q ss_pred             CChhhhc----CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHHHhccc-cc-c-c--c--cceE
Q psy2372         294 IDITSAI----QPPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHSLIGDI-SN-S-Y--Q--EEIE  362 (447)
Q Consensus       294 ~~v~~im----~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~i~gei-~e-~-~--~--~~~~  362 (447)
                      .+++++.    +++.++++++++.+|++.|.+++.+.+||+|++|+++|+||..|++..+.... .. + .  +  ....
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~   88 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRS   88 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCC
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhh
Confidence            3466653    56889999999999999999999999999999999999999999998887643 21 1 0  0  0001


Q ss_pred             EecCCeEEEeccCCHHHHHHHh
Q psy2372         363 FCEDGSWIISASMTFDRFKELL  384 (447)
Q Consensus       363 ~~~~~~~~v~g~~~i~~~~~~l  384 (447)
                      ....+.+.+....++.+..+.+
T Consensus        89 ~~~~~~~~v~~~~~l~~~~~~m  110 (145)
T d2v8qe1          89 HYFEGVLKCYLHETLEAIINRL  110 (145)
T ss_dssp             SCCCSCCEECTTSBHHHHHHHH
T ss_pred             hccCCCeEECCCCcHHHHHHHH
Confidence            1123445677777777765544

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1e-05  Score=69.57  Aligned_cols=60  Identities=10%  Similarity=0.053  Sum_probs=53.7

Q ss_pred             CceeeceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         224 DDQCAITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       224 ~~~~V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      ....++++|+|  +++++++++++.++.++|.+++.+++||.+ + |+++|+|+.+|+++++.+
T Consensus        98 ~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~-g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          98 PTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-N-GRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-T-TEEEEEEEHHHHHHHHHH
T ss_pred             cccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-C-CEEEEEEEHHHHHHHHHH
Confidence            46779999995  567999999999999999999999999987 3 799999999999998765

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.86  E-value=1.3e-05  Score=67.69  Aligned_cols=60  Identities=20%  Similarity=0.218  Sum_probs=53.9

Q ss_pred             CCChhhhc-CCCeeeCCCCCHHHHHHHHHHcCCceEEEEcC--CCCEEEEEeHHHHHHHHhcc
Q psy2372         293 NIDITSAI-QPPLFIPETISTMQLLETFKKNKSELSLVIDE--YGELEGIITINDIIHSLIGD  352 (447)
Q Consensus       293 ~~~v~~im-~~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe--~G~~iGiVT~~DIle~i~ge  352 (447)
                      +.+++|+| +++.++++++++.++++.|++++.+.+||+|+  ++.++|++|..|++..+...
T Consensus        10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~   72 (160)
T d2d4za3          10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRR   72 (160)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHH
T ss_pred             ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhc
Confidence            37899999 57889999999999999999999999999984  47899999999999987654

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.63  E-value=3.6e-05  Score=66.47  Aligned_cols=58  Identities=12%  Similarity=0.138  Sum_probs=52.0

Q ss_pred             CChhhhcC---CCeeeCCCCCHHHHHHHHHHcCCceEEEEcC-CCCEEEEEeHHHHHHHHhc
Q psy2372         294 IDITSAIQ---PPLFIPETISTMQLLETFKKNKSELSLVIDE-YGELEGIITINDIIHSLIG  351 (447)
Q Consensus       294 ~~v~~im~---~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe-~G~~iGiVT~~DIle~i~g  351 (447)
                      .++.|+|.   +++++++++++.+|++.|.+++.+.+||+|+ .|+++|++|..|++..+..
T Consensus        20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~   81 (179)
T d2ooxe1          20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKY   81 (179)
T ss_dssp             SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHH
T ss_pred             CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHh
Confidence            56889994   5689999999999999999999999999984 5889999999999988764

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=1.4e-05  Score=67.73  Aligned_cols=58  Identities=10%  Similarity=0.111  Sum_probs=50.7

Q ss_pred             eceeeeeCCceEEEcCCCCHHHHHHHHHhCCCcEEEEEeCCCCeEEEEEEhhhHHHHhHh
Q psy2372         228 AITLMTPRMKVNFINIDDNIEKNLIKILDSSYNYFPVYKKSISKIIGTLNTKTLFKKIIS  287 (447)
Q Consensus       228 V~dvM~pr~~v~~v~~~~tl~e~~~~~~~~~~s~iPV~~~~~~~ivGiv~~~DLl~~~~~  287 (447)
                      +.++|.  .+++++++++++.++++.|.+++.+++||+|++.++++|+|+.+|+++++..
T Consensus        98 ~~~~~~--~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          98 YLQDSF--KPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             HSSSSC--CCCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             eeeeec--cceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence            456776  4677899999999999999999999999998666899999999999998753

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=82.07  E-value=0.0036  Score=54.88  Aligned_cols=73  Identities=11%  Similarity=0.081  Sum_probs=57.7

Q ss_pred             CeEEEEEEhhhHHHHhHhCCCccCCChhhhcC-CCeeeCCCCCHHHHHHHHHHcCCceEEEEcCCCCEEEEEeHHHHHHH
Q psy2372         270 SKIIGTLNTKTLFKKIISNRSIVNIDITSAIQ-PPLFIPETISTMQLLETFKKNKSELSLVIDEYGELEGIITINDIIHS  348 (447)
Q Consensus       270 ~~ivGiv~~~DLl~~~~~~~~~~~~~v~~im~-~~~~V~~~~~l~~al~~m~~~~~~~a~VvDe~G~~iGiVT~~DIle~  348 (447)
                      +++.|+.+..++......      ..+++++. ...++..+++-..+-+.|..++...+||+|++++..|.||.+|+.++
T Consensus       119 ~~l~~f~dl~~l~~~~~~------~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         119 RRMFVFEDILKLDDRSIQ------LVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             HHHCCGGGGGGSCHHHHH------HHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHHH
T ss_pred             hhccccccHHHHccccHh------HHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHHH
Confidence            466777666666554332      44667773 45678889999999999999999999999999999999999998554