Psyllid ID: psy237

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230------
Protein Sequence
MSTPRICTVPYQYRTPKYPQNLYRTPKYPHQFNPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFARTEPPDTQ
Secondary Structure (PSIPRED)
ccccccccEEEEEccccccccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHccccEEEEEEEccccccEEEcccccEEEEEcccccccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHcccccccccccccHHHHHHcccccccHHHHHHHcccccHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEcccccccHHHcccccccccccccccHccHccccccccccccEEEccccccccHHHHHHHHHHHccccEEEEEEcccccccEEEEccccHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHcccHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHccHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
mstprictvpyqyrtpkypqnlyrtpkyphqfnpgrnlssaqpaaalsepshpqlvtevpgpqTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTqissvplgynhpallkifddpatvktfvnrpalgvfpsgdwpQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTqissvplgynhpallkifddpatvkcsddktshiptfarteppdtq
Flexible Loop (DISEMBL)
mstprictvpyqyrtpkypqnlyRTPKYPHQFNPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDktshiptfarteppdtq
Low Complexity Region (SEG)
MSTPRICTVPYQYRTPKYPQNLYRTPKYPHQFNPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTKAlkqklsqlqqsgsvslFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFARTEPPDTQ
Disordered region (IsUnstruct)
*****ICTVPYQYRTPKYPQNLY********************************************************VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKC********************
Disordered Region (DISOPRED)
****RICTVPYQYRTPKYPQ*LYRTPK*************************PQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFART**P***
Disordered Region (DISEMBL)
MSTPRICTVPYQYRTPKYPQNLYRTPKYPHQFNPGRNL**************PQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFA********
Disordered Region (DISPRO)
*STPRICTVPYQYRTPKYPQNLYRTPKYPHQFNPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFARTEP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSTPRICTVPYQYRTPKYPQNLYRTPKYPHQFNPGRNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFARTEPPDTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	236	2.2.26 [Sep-21-2011]
Q21217	483	Probable 4-aminobutyrate	yes	N/A	0.474	0.231	0.539	5e-30
P14010	498	4-aminobutyrate aminotran	yes	N/A	0.470	0.222	0.477	8e-28
P61922	500	4-aminobutyrate aminotran	no	N/A	0.555	0.262	0.466	2e-27
P50554	500	4-aminobutyrate aminotran	yes	N/A	0.555	0.262	0.458	3e-27
P80147	500	4-aminobutyrate aminotran	yes	N/A	0.444	0.21	0.504	7e-27
P80404	500	4-aminobutyrate aminotran	yes	N/A	0.444	0.21	0.514	3e-26
Q55FI1	495	4-aminobutyrate aminotran	yes	N/A	0.478	0.228	0.469	7e-26
Q9BGI0	500	4-aminobutyrate aminotran	yes	N/A	0.436	0.206	0.485	3e-23
O13837	474	4-aminobutyrate aminotran	yes	N/A	0.529	0.263	0.412	2e-22
P17649	471	4-aminobutyrate aminotran	yes	N/A	0.461	0.231	0.445	4e-22

>sp|Q21217|GABT_CAEEL Probable 4-aminobutyrate aminotransferase, mitochondrial OS=Caenorhabditis elegans GN=gta-1 PE=1 SV=1

 Score =  131 bits (329), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 83/113 (73%)

Query: 44  AAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHIL 103
           A A +EPS P + T +PGP++KALKQ++ ++ Q+ SV   VDY+KSFGNY+VD DGN +L
Sbjct: 19  AIANAEPSGPSISTSIPGPKSKALKQEMDKVHQTTSVRFHVDYEKSFGNYVVDADGNALL 78

Query: 104 DVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVL 156
           DVYTQISS+PLGYNHP L+K+   P  + + V+RPALG FP  D+   + + L
Sbjct: 79  DVYTQISSLPLGYNHPDLVKVASQPHLITSLVSRPALGSFPRTDFADGISHAL 131

Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 2EC: 2

>sp|P14010|GABAT_EMENI 4-aminobutyrate aminotransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=gatA PE=3 SV=1

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 53/111 (47%), Positives = 79/111 (71%)

Query: 48  SEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYT 107
           +EP+ P+L T +PGP+ KA  ++L+++    S+++  DY KS GNY+ D+DGN +LDVY 
Sbjct: 39  NEPTAPKLATAIPGPKNKAASEQLNEVFDVRSLNMLADYTKSVGNYIADLDGNMLLDVYA 98

Query: 108 QISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK 158
           QI+S+P+GYN+P LLK+   P    + +NRPALG FPS DW  +L+  +LK
Sbjct: 99  QIASIPVGYNNPHLLKVAASPEMATSLINRPALGNFPSADWAHILKTGILK 149

Deaminates gamma-aminobutyric acid (GABA) to succinate-semialdehyde, which in turn is converted to succinate by the succinate semialdehyde dehydrogenase (By similarity). Required for the degradation of GABA, which is important for utilization of GABA as nitrogen source.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|P61922|GABT_MOUSE 4-aminobutyrate aminotransferase, mitochondrial OS=Mus musculus GN=Abat PE=1 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 86/133 (64%), Gaps = 2/133 (1%)

Query: 27  KYPHQFNPGRNLSSAQPAAALSEPSH--PQLVTEVPGPQTKALKQKLSQLQQSGSVSLFV 84
           K  H F PG    S   A    E  +  P + TEVPGP++K L ++L+ +Q + +V  F 
Sbjct: 16  KNLHLFIPGSRYISQAAAKVDIEFDYDGPLMKTEVPGPRSKELMKQLNTIQNAEAVHFFC 75

Query: 85  DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFP 144
           +Y++S GNYLVDVDGN +LD+Y+QISSVP+GYNHPAL K+   P    TF+NRPALG+ P
Sbjct: 76  NYEESRGNYLVDVDGNRMLDLYSQISSVPIGYNHPALAKLVQQPQNASTFINRPALGILP 135

Query: 145 SGDWPQLLENVLL 157
             ++   L+  L+
Sbjct: 136 PENFVDKLQESLM 148

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P50554|GABT_RAT 4-aminobutyrate aminotransferase, mitochondrial OS=Rattus norvegicus GN=Abat PE=1 SV=3

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 2/133 (1%)

Query: 27  KYPHQFNPGRNLSSAQPAAALSEPSH--PQLVTEVPGPQTKALKQKLSQLQQSGSVSLFV 84
           K  H F PG    S   A    E  +  P + TEVPGP+++ L ++L+ +Q + +V  F 
Sbjct: 16  KNLHLFTPGSRYISQAAAKVDFEFDYDGPLMKTEVPGPRSQELMKQLNTIQNAEAVHFFC 75

Query: 85  DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFP 144
           +Y++S GNYLVDVDGN +LD+Y+QISSVP+GYNHPAL K+   P    TF+NRPALG+ P
Sbjct: 76  NYEESRGNYLVDVDGNRMLDLYSQISSVPIGYNHPALAKLVQQPQNASTFINRPALGILP 135

Query: 145 SGDWPQLLENVLL 157
             ++   L   L+
Sbjct: 136 PENFVDKLRESLM 148

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P80147|GABT_PIG 4-aminobutyrate aminotransferase, mitochondrial OS=Sus scrofa GN=ABAT PE=1 SV=2

 Score =  120 bits (301), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 79/105 (75%)

Query: 53  PQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSV 112
           P + TEVPGP+++ L ++L+ +Q + +V  F +Y++S GNYLVDVDGN +LD+Y+QISS+
Sbjct: 44  PLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSI 103

Query: 113 PLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
           P+GY+HPAL+K+   P  V TF+NRPALG+ P  ++ + L   LL
Sbjct: 104 PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLL 148

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P80404|GABT_HUMAN 4-aminobutyrate aminotransferase, mitochondrial OS=Homo sapiens GN=ABAT PE=1 SV=3

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 77/105 (73%)

Query: 53  PQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSV 112
           P + TEVPGP+++ L ++L+ +Q + +V  F +Y++S GNYLVDVDGN +LD+Y+QISSV
Sbjct: 44  PLMKTEVPGPRSQELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSV 103

Query: 113 PLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
           P+GY+HPALLK+   P     FVNRPALG+ P  ++ + L   LL
Sbjct: 104 PIGYSHPALLKLIQQPQNASMFVNRPALGILPPENFVEKLRQSLL 148

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q55FI1|GABT_DICDI 4-aminobutyrate aminotransferase OS=Dictyostelium discoideum GN=gabT PE=3 SV=1

 Score =  117 bits (293), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/113 (46%), Positives = 75/113 (66%)

Query: 48  SEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYT 107
            E   P + T++PGPQ+KAL ++L++LQ   +   F DY  S GNY+ DVDGN +LD+Y 
Sbjct: 35  GEYKEPIVKTQIPGPQSKALIERLNKLQDPRAAHFFADYANSRGNYISDVDGNILLDLYC 94

Query: 108 QISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS 160
           QI+S+P+GYN+P L+K       V   +NRP+LGV P  DWP L+EN  ++ S
Sbjct: 95  QIASIPIGYNNPELIKAAKSDRWVSAIINRPSLGVLPPKDWPALIENSFMQVS 147

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|Q9BGI0|GABT_BOVIN 4-aminobutyrate aminotransferase, mitochondrial OS=Bos taurus GN=ABAT PE=2 SV=1

 Score =  108 bits (270), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 72/103 (69%)

Query: 55  LVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPL 114
           + TEVPG + + L ++L+ +Q + +V  F +Y++S GNYLVDVDGN +LD+Y+QISSVP+
Sbjct: 46  MKTEVPGLRCQELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPI 105

Query: 115 GYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
           GY+HP LLK+   P     FVNRPALG+    ++ + L   LL
Sbjct: 106 GYSHPGLLKLIQQPQNASMFVNRPALGILLPENFVEKLRQSLL 148

Catalyzes the conversion of gamma-aminobutyrate and L-beta-aminoisobutyrate to succinate semialdehyde and methylmalonate semialdehyde, respectively. Can also convert delta-aminovalerate and beta-alanine.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|O13837|GABAT_SCHPO 4-aminobutyrate aminotransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=uga1 PE=1 SV=1

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/126 (41%), Positives = 79/126 (62%), Gaps = 1/126 (0%)

Query: 48  SEPSHPQLVTE-VPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVY 106
           +EP  P + TE +PGP+ KA  +++S+     +V   VDY+KS GNYLVD+DGN +LDVY
Sbjct: 16  NEPQGPSIKTETIPGPKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVY 75

Query: 107 TQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLF 166
           +QI+++P+GYN+P LLK           +NRPALG +P  +W ++     +K +     +
Sbjct: 76  SQIATIPIGYNNPTLLKAAKSDEVATILMNRPALGNYPPKEWARVAYEGAIKYAPKGQKY 135

Query: 167 VDYQKS 172
           V +Q S
Sbjct: 136 VYFQMS 141

Required for the degradation of gamma-aminobutyric acid (GABA), which is important for utilization of GABA as nitrogen source. Deaminates GABA to succinate-semialdehyde, which in turn is converted to succinate by the succinate semialdehyde dehydrogenase. Cannot transaminate beta-alanine (BAL).

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

>sp|P17649|GABAT_YEAST 4-aminobutyrate aminotransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA1 PE=1 SV=2

 Score =  104 bits (260), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 73/110 (66%), Gaps = 1/110 (0%)

Query: 48  SEPSHPQLVTE-VPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVY 106
            EP+ P + TE +PGP+++   ++L ++  +       DY+KS GNY+ DVDGN  LD+Y
Sbjct: 10  EEPTKPTVKTESIPGPESQKQLKELGEVFDTRPAYFLADYEKSLGNYITDVDGNTYLDLY 69

Query: 107 TQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVL 156
            QISS+ LGYN+PAL+K    P  ++  V+RPALG FPS D  ++L+ +L
Sbjct: 70  AQISSIALGYNNPALIKAAQSPEMIRALVDRPALGNFPSKDLDKILKQIL 119

Required for the degradation of gamma-aminobutyric acid (GABA), which is important for utilization of GABA as nitrogen source and for oxidative stress tolerance. Deaminates GABA to succinate semialdehyde, which in turn is converted to succinate by the succinate-semialdehyde dehydrogenase UGA2. Cannot transaminate beta-alanine (BAL).

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
157132998	495	4-aminobutyrate aminotransferase [Aedes	0.474	0.226	0.622	8e-36
312377903	1533	hypothetical protein AND_10663 [Anophele	0.461	0.071	0.660	8e-36
156545259	490	PREDICTED: 4-aminobutyrate aminotransfer	0.521	0.251	0.596	2e-35
357621008	491	4-aminobutyrate aminotransferase [Danaus	0.487	0.234	0.591	1e-34
340718052	498	PREDICTED: 4-aminobutyrate aminotransfer	0.576	0.273	0.510	2e-34
332027288	497	4-aminobutyrate aminotransferase, mitoch	0.512	0.243	0.56	2e-34
307180215	499	4-aminobutyrate aminotransferase, mitoch	0.491	0.232	0.543	1e-33
350420895	498	PREDICTED: 4-aminobutyrate aminotransfer	0.576	0.273	0.503	2e-33
307191787	525	4-aminobutyrate aminotransferase, mitoch	0.466	0.209	0.590	6e-33
307180216	499	4-aminobutyrate aminotransferase, mitoch	0.474	0.224	0.571	8e-33

>gi|157132998|ref|XP_001656148.1| 4-aminobutyrate aminotransferase [Aedes aegypti] gi|108870984|gb|EAT35209.1| AAEL012609-PA [Aedes aegypti]

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 71/114 (62%), Positives = 90/114 (78%)

Query: 44  AAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHIL 103
           A  LSEP+ P + T +PGP++K L ++L+ LQQ GSV LF DY++S GNYL DVDGN +L
Sbjct: 29  ATQLSEPNGPSVKTAIPGPKSKELLKQLNALQQGGSVQLFADYERSVGNYLQDVDGNVLL 88

Query: 104 DVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
           D+YTQISSVPLGYNHP LLK+F D   +K+ +NRPALGVFP  DWP+ L+NVL+
Sbjct: 89  DIYTQISSVPLGYNHPELLKVFKDDHNLKSLINRPALGVFPGEDWPRKLQNVLM 142

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377903|gb|EFR24619.1| hypothetical protein AND_10663 [Anopheles darlingi]

 Score =  156 bits (394), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 87/109 (79%)

Query: 49   EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
            EP  P L TEVPGP++KAL Q+L+QLQ +GSV +FVDY KS+GNYL DVDGN +LD+YTQ
Sbjct: 1050 EPVGPSLQTEVPGPKSKALMQQLNQLQNAGSVQMFVDYDKSYGNYLQDVDGNVLLDIYTQ 1109

Query: 109  ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
            ISSVPLGYNH  LLK+F +   + T +NRPALGVFP  DWP  L+NVL+
Sbjct: 1110 ISSVPLGYNHRELLKVFQNDHNLSTLINRPALGVFPGEDWPARLQNVLM 1158

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156545259|ref|XP_001607115.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Nasonia vitripennis]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/124 (59%), Positives = 93/124 (75%), Gaps = 1/124 (0%)

Query: 38  LSSAQPAAALS-EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVD 96
           LS +    AL+ EPS PQ+  EVPGP++K L ++L+ +QQ+GSV LF DY+KS GNYL D
Sbjct: 17  LSRSLATQALADEPSAPQVTCEVPGPKSKELFRELNDMQQAGSVQLFADYEKSAGNYLAD 76

Query: 97  VDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVL 156
           VDGN +LDVY QISS+PLGYNHPA+LK   DP   K   NRPALGVFP+ DWP+ L+ VL
Sbjct: 77  VDGNMLLDVYMQISSMPLGYNHPAMLKALTDPHNQKMIANRPALGVFPNRDWPEKLKKVL 136

Query: 157 LKQS 160
           L++ 
Sbjct: 137 LRKG 140

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357621008|gb|EHJ72994.1| 4-aminobutyrate aminotransferase [Danaus plexippus]

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 86/115 (74%)

Query: 44  AAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHIL 103
             A SEP+ P++ T VPGP+TKAL + LS LQQ+ SV LF DY K FGNY VD DGN  L
Sbjct: 26  GVAQSEPAQPEIKTSVPGPKTKALLKDLSSLQQADSVQLFADYDKCFGNYFVDADGNTFL 85

Query: 104 DVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK 158
           D +TQISS+P+GYNHP LLK F++   +++ +NRPALGVFP  DWPQ L +VL++
Sbjct: 86  DAFTQISSIPIGYNHPELLKAFNEEHALRSLINRPALGVFPGSDWPQKLRSVLME 140

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718052|ref|XP_003397486.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Bombus terrestris]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 93/137 (67%), Gaps = 1/137 (0%)

Query: 25  TPKYPHQFNPGRNLSSAQP-AAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLF 83
           T K+  Q   G  +S  +    ++ EP  P + TE+PGP++++L Q+L+ +QQ+ SV  F
Sbjct: 12  TRKFSRQLFKGYAISWERCLTVSVEEPKKPMVTTEIPGPRSRSLLQELTSMQQASSVQFF 71

Query: 84  VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF 143
            DY+KS GNY++DVDGN +LDVY QISS+PLGYNHPA+LK   DP   K   NRPALGVF
Sbjct: 72  ADYEKSVGNYIMDVDGNILLDVYMQISSMPLGYNHPAMLKALADPVNQKIIANRPALGVF 131

Query: 144 PSGDWPQLLENVLLKQS 160
           P  DWP  L N+LL + 
Sbjct: 132 PGKDWPDKLRNILLHKE 148

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332027288|gb|EGI67372.1| 4-aminobutyrate aminotransferase, mitochondrial [Acromyrmex echinatior]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 91/125 (72%), Gaps = 4/125 (3%)

Query: 36  RNLSSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLV 95
           R L+ + P     EP  P L+TE+PGP++++L Q+LS +QQ+ SV  F DY+KS GNY++
Sbjct: 27  RCLTGSMP----REPEGPVLMTEIPGPRSRSLLQELSSIQQASSVQFFADYEKSAGNYII 82

Query: 96  DVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENV 155
           DVDGN +LDVY QISS+PLGYNHPA+L+   DP   +  VNRPALGVFP  DWP  L +V
Sbjct: 83  DVDGNVLLDVYMQISSMPLGYNHPAMLEALADPVNQRIIVNRPALGVFPGKDWPNRLRDV 142

Query: 156 LLKQS 160
           LLK+ 
Sbjct: 143 LLKKE 147

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180215|gb|EFN68248.1| 4-aminobutyrate aminotransferase, mitochondrial [Camponotus floridanus]

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 63/116 (54%), Positives = 89/116 (76%)

Query: 45  AALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILD 104
           +++ EP  P ++T++PGP++++L Q+L+ +QQ+ SV  F DY+KSFGNY++DVDGN +LD
Sbjct: 35  SSVKEPEGPVILTKIPGPRSQSLLQELNAIQQATSVQFFADYEKSFGNYIIDVDGNAMLD 94

Query: 105 VYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS 160
           VY QIS++PLGYNHPA+L+   DP   K   NRPALG FP  DWP  L+N+LLK+ 
Sbjct: 95  VYMQISTMPLGYNHPAMLEALADPVNQKIIANRPALGSFPGKDWPNRLKNILLKKE 150

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420895|ref|XP_003492665.1| PREDICTED: 4-aminobutyrate aminotransferase, mitochondrial-like [Bombus impatiens]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 91/137 (66%), Gaps = 1/137 (0%)

Query: 25  TPKYPHQFNPGRNLSSAQP-AAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLF 83
           T K+  Q   G  +S  +    ++ EP  P + TE+PGP++++L Q+L+ +QQ+ SV  F
Sbjct: 12  TQKFSRQLFKGYAISWKRCLTVSVEEPKKPIVTTEIPGPRSRSLLQELTSMQQASSVQFF 71

Query: 84  VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF 143
            DY+KS GNY+ DVDGN +LDVY QISS+PLGYNHPA+LK   DP   K   NRPALGVF
Sbjct: 72  ADYEKSVGNYITDVDGNTLLDVYMQISSMPLGYNHPAMLKALADPVNQKIIANRPALGVF 131

Query: 144 PSGDWPQLLENVLLKQS 160
           P  DWP  L  +LL + 
Sbjct: 132 PGKDWPDKLRKILLHKE 148

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191787|gb|EFN75225.1| 4-aminobutyrate aminotransferase, mitochondrial [Harpegnathos saltator]

 Score =  146 bits (369), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 82/110 (74%)

Query: 49  EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
           EP+ P + TE+PGPQ++ + Q+L+ +QQ+ SV  FVDY+KS GNY+VDVDGN +LDVY Q
Sbjct: 64  EPARPVVATEIPGPQSRNMLQELNAIQQASSVQFFVDYEKSVGNYIVDVDGNALLDVYMQ 123

Query: 109 ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK 158
           ISS+PLGYNHPA+L+   DP   K   NRPALGVFP   W + L  VLLK
Sbjct: 124 ISSMPLGYNHPAMLEALADPVNQKIMANRPALGVFPGSQWAERLNRVLLK 173

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180216|gb|EFN68249.1| 4-aminobutyrate aminotransferase, mitochondrial [Camponotus floridanus]

 Score =  146 bits (368), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 83/112 (74%)

Query: 49  EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
           EP  P ++TE+PGPQ+++L Q+L+ +QQ+ SV  F DY+KS GNY++DVDGN +LDVY Q
Sbjct: 38  EPEGPIIMTEIPGPQSRSLLQELNAIQQASSVQFFADYEKSSGNYIMDVDGNALLDVYMQ 97

Query: 109 ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS 160
           ISS+PLGYNHPA+L    DP   K   NRPALGVFP  +WP  L N+LL + 
Sbjct: 98  ISSMPLGYNHPAMLAALADPVNQKIIANRPALGVFPGKNWPNRLRNILLNKE 149

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	236
FB|FBgn0036927	486	CG7433 [Drosophila melanogaste	0.461	0.224	0.518	2.2e-26
ZFIN|ZDB-GENE-031006-4	500	abat "4-aminobutyrate aminotra	0.525	0.248	0.460	5.7e-25
WB|WBGene00001794	483	gta-1 [Caenorhabditis elegans	0.478	0.233	0.486	1e-24
ASPGD|ASPL0000050000	498	gatA [Emericella nidulans (tax	0.512	0.242	0.438	2.6e-24
MGI|MGI:2443582	500	Abat "4-aminobutyrate aminotra	0.542	0.256	0.438	7.3e-24
UNIPROTKB|F1MFB7	500	ABAT "4-aminobutyrate aminotra	0.525	0.248	0.436	2.6e-23
RGD|620948	500	Abat "4-aminobutyrate aminotra	0.538	0.254	0.435	2.6e-23
UNIPROTKB|P80147	500	ABAT "4-aminobutyrate aminotra	0.525	0.248	0.428	7.3e-23
UNIPROTKB|E2R776	500	ABAT "Uncharacterized protein"	0.542	0.256	0.423	1.2e-22
UNIPROTKB|G4MUF4	503	MGG_01662 "4-aminobutyrate ami	0.470	0.220	0.459	1.6e-22

FB|FBgn0036927 CG7433 [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 2.2e-26, P = 2.2e-26
 Identities = 57/110 (51%), Positives = 72/110 (65%)

Query:    49 EPSHPQLVTE-VPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFGNYLVDVDGNHILDVYT 107
             EP  P + T+ +PGP++                  F DY+KS GNY+ DVDGN +LDVYT
Sbjct:    27 EPKEPVVKTKSIPGPKSIELKKQLDSVQATGTIQFFADYEKSIGNYIYDVDGNILLDVYT 86

Query:   108 QISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
             QISSVPLGYNHP L K+F++   +KT +NRPALGVFP  +WP  L +VLL
Sbjct:    87 QISSVPLGYNHPRLYKVFNNEQNMKTLINRPALGVFPGKEWPGKLHSVLL 136

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ZFIN|ZDB-GENE-031006-4 abat "4-aminobutyrate aminotransferase" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 5.7e-25, P = 5.7e-25
 Identities = 58/126 (46%), Positives = 76/126 (60%)

Query:    34 PGRNLSSAQPAAALSEPSH--PQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFG 91
             PG    S      +SE  +  P + T VPGP++K                 F +Y++S G
Sbjct:    23 PGSRYVSKTATKTVSEFEYDAPSMKTTVPGPKSKELLRQLGEIQNTGAIHFFCNYEESRG 82

Query:    92 NYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQL 151
             NYLVDVDGN +LDVYTQISS+P+GYNHPAL+K+  +P  V  FVNRPALG+ P  ++P+ 
Sbjct:    83 NYLVDVDGNRMLDVYTQISSIPIGYNHPALMKVMTNPNNVSAFVNRPALGILPPENFPEK 142

Query:   152 LENVLL 157
             L   LL
Sbjct:   143 LAESLL 148

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

WB|WBGene00001794 gta-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 286 (105.7 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 55/113 (48%), Positives = 72/113 (63%)

Query:    44 AAALSEPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFGNYLVDVDGNHIL 103
             A A +EPS P + T +PGP++KA                 VDY+KSFGNY+VD DGN +L
Sbjct:    19 AIANAEPSGPSISTSIPGPKSKALKQEMDKVHQTTSVRFHVDYEKSFGNYVVDADGNALL 78

Query:   104 DVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVL 156
             DVYTQISS+PLGYNHP L+K+   P  + + V+RPALG FP  D+   + + L
Sbjct:    79 DVYTQISSLPLGYNHPDLVKVASQPHLITSLVSRPALGSFPRTDFADGISHAL 131

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

ASPGD|ASPL0000050000 gatA [Emericella nidulans (taxid:162425)]

 Score = 283 (104.7 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 53/121 (43%), Positives = 73/121 (60%)

Query:    38 LSSAQPAAALSEPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFGNYLVDV 97
             L +A+     +EP+ P+L T +PGP+ KA                  DY KS GNY+ D+
Sbjct:    29 LRAAEKPYFPNEPTAPKLATAIPGPKNKAASEQLNEVFDVRSLNMLADYTKSVGNYIADL 88

Query:    98 DGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
             DGN +LDVY QI+S+P+GYN+P LLK+   P    + +NRPALG FPS DW  +L+  +L
Sbjct:    89 DGNMLLDVYAQIASIPVGYNNPHLLKVAASPEMATSLINRPALGNFPSADWAHILKTGIL 148

Query:   158 K 158
             K
Sbjct:   149 K 149

GO:0043605 "cellular amide catabolic process" evidence=IMP

GO:0006540 "glutamate decarboxylation to succinate" evidence=RCA

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=IMP

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA;RCA

GO:0005829 "cytosol" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006536 "glutamate metabolic process" evidence=IEA

MGI|MGI:2443582 Abat "4-aminobutyrate aminotransferase" [Mus musculus (taxid:10090)]

 Score = 279 (103.3 bits), Expect = 7.3e-24, P = 7.3e-24
 Identities = 57/130 (43%), Positives = 77/130 (59%)

Query:    30 HQFNPG-RNLSSAQPAAALS-EPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQ 87
             H F PG R +S A     +  +   P + TEVPGP++K                 F +Y+
Sbjct:    19 HLFIPGSRYISQAAAKVDIEFDYDGPLMKTEVPGPRSKELMKQLNTIQNAEAVHFFCNYE 78

Query:    88 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGD 147
             +S GNYLVDVDGN +LD+Y+QISSVP+GYNHPAL K+   P    TF+NRPALG+ P  +
Sbjct:    79 ESRGNYLVDVDGNRMLDLYSQISSVPIGYNHPALAKLVQQPQNASTFINRPALGILPPEN 138

Query:   148 WPQLLENVLL 157
             +   L+  L+
Sbjct:   139 FVDKLQESLM 148

GO:0001666 "response to hypoxia" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0007620 "copulation" evidence=ISO

GO:0007626 "locomotory behavior" evidence=ISO

GO:0008483 "transaminase activity" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010039 "response to iron ion" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=ISO

GO:0032144 "4-aminobutyrate transaminase complex" evidence=ISO

GO:0035094 "response to nicotine" evidence=ISO

GO:0042135 "neurotransmitter catabolic process" evidence=IEA

GO:0042220 "response to cocaine" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045471 "response to ethanol" evidence=ISO

GO:0045776 "negative regulation of blood pressure" evidence=ISO

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=IMP

UNIPROTKB|F1MFB7 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 274 (101.5 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 55/126 (43%), Positives = 78/126 (61%)

Query:    34 PG-RNLSSAQPAAALS-EPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFG 91
             PG R++S A     +  +   P + TEVPGP+++                 F +Y++S G
Sbjct:    23 PGSRHISQAAAKVDVEFDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRG 82

Query:    92 NYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQL 151
             NYLVDVDGN +LD+Y+QISSVP+GYNHPAL+K+   P  + TF+NRPALG+ P  ++ + 
Sbjct:    83 NYLVDVDGNRMLDLYSQISSVPIGYNHPALMKLVQQPQNMSTFINRPALGILPPENFVEK 142

Query:   152 LENVLL 157
             L   LL
Sbjct:   143 LRESLL 148

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

RGD|620948 Abat "4-aminobutyrate aminotransferase" [Rattus norvegicus (taxid:10116)]

 Score = 274 (101.5 bits), Expect = 2.6e-23, P = 2.6e-23
 Identities = 57/131 (43%), Positives = 76/131 (58%)

Query:    30 HQFNPGRNLSSAQPAAALS---EPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDY 86
             H F PG    S Q AA +    +   P + TEVPGP+++                 F +Y
Sbjct:    19 HLFTPGSRYIS-QAAAKVDFEFDYDGPLMKTEVPGPRSQELMKQLNTIQNAEAVHFFCNY 77

Query:    87 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSG 146
             ++S GNYLVDVDGN +LD+Y+QISSVP+GYNHPAL K+   P    TF+NRPALG+ P  
Sbjct:    78 EESRGNYLVDVDGNRMLDLYSQISSVPIGYNHPALAKLVQQPQNASTFINRPALGILPPE 137

Query:   147 DWPQLLENVLL 157
             ++   L   L+
Sbjct:   138 NFVDKLRESLM 148

GO:0001666 "response to hypoxia" evidence=IMP

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA;ISO;ISS;IDA

GO:0005739 "mitochondrion" evidence=ISO;ISS;IDA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0007620 "copulation" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=IC

GO:0010039 "response to iron ion" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;ISO;ISS

GO:0032144 "4-aminobutyrate transaminase complex" evidence=ISO;ISS

GO:0032145 "succinate-semialdehyde dehydrogenase binding" evidence=ISS

GO:0035094 "response to nicotine" evidence=IMP

GO:0042135 "neurotransmitter catabolic process" evidence=IC

GO:0042220 "response to cocaine" evidence=IMP

GO:0042493 "response to drug" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=ISO;ISS

GO:0043005 "neuron projection" evidence=IDA

GO:0045471 "response to ethanol" evidence=IDA

GO:0045776 "negative regulation of blood pressure" evidence=IMP

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

GO:0048148 "behavioral response to cocaine" evidence=ISO;ISS

UNIPROTKB|P80147 ABAT "4-aminobutyrate aminotransferase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 270 (100.1 bits), Expect = 7.3e-23, P = 7.3e-23
 Identities = 54/126 (42%), Positives = 78/126 (61%)

Query:    34 PG-RNLSSAQPAAALS-EPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFG 91
             PG R++S A     +  +   P + TEVPGP+++                 F +Y++S G
Sbjct:    23 PGWRHISQAAAKVDVEFDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRG 82

Query:    92 NYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQL 151
             NYLVDVDGN +LD+Y+QISS+P+GY+HPAL+K+   P  V TF+NRPALG+ P  ++ + 
Sbjct:    83 NYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEK 142

Query:   152 LENVLL 157
             L   LL
Sbjct:   143 LRESLL 148

GO:0005829 "cytosol" evidence=TAS

GO:0048148 "behavioral response to cocaine" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS;TAS

GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IDA

GO:0032145 "succinate-semialdehyde dehydrogenase binding" evidence=IDA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0042135 "neurotransmitter catabolic process" evidence=IC

GO:0042803 "protein homodimerization activity" evidence=ISS;IPI

GO:0003867 "4-aminobutyrate transaminase activity" evidence=ISS;IMP;IDA

GO:0009450 "gamma-aminobutyric acid catabolic process" evidence=IC

GO:0047298 "(S)-3-amino-2-methylpropionate transaminase activity" evidence=IEA

UNIPROTKB|E2R776 ABAT "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 55/130 (42%), Positives = 77/130 (59%)

Query:    30 HQFNPG-RNLSSAQPAAALS-EPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQ 87
             H   P  R++S A     +  +   P + TEVPGP+++                 F +Y+
Sbjct:    19 HLLAPSSRHISQAAAKVDVEFDYDGPLMKTEVPGPKSRELMKQLNIIQNAEAVHFFCNYE 78

Query:    88 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGD 147
             +S GNYLVDVDGN +LD+Y+QISSVP+GY+HPALLK+   P    TF+NRPALG+ P  +
Sbjct:    79 ESRGNYLVDVDGNRMLDLYSQISSVPIGYSHPALLKLVQQPQNASTFINRPALGILPPEN 138

Query:   148 WPQLLENVLL 157
             + + L   LL
Sbjct:   139 FVEKLRESLL 148

GO:0048148 "behavioral response to cocaine" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032144 "4-aminobutyrate transaminase complex" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0003867 "4-aminobutyrate transaminase activity" evidence=IEA

UNIPROTKB|G4MUF4 MGG_01662 "4-aminobutyrate aminotransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 267 (99.0 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 51/111 (45%), Positives = 68/111 (61%)

Query:    48 SEPSHPQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFGNYLVDVDGNHILDVYT 107
             SEP  P + TE+PGP+ +A                  DY  S GNY+VD DGN +LDVY 
Sbjct:    43 SEPEGPSVKTEIPGPKAQAAIKELDEVFDTRSLNMLTDYPSSSGNYIVDPDGNVLLDVYA 102

Query:   108 QISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK 158
             QI+S+P+GYN+PALL+    P  ++  VNRPALG FP  DW  +L++ +LK
Sbjct:   103 QIASIPIGYNNPALLEASRSPEMLQGLVNRPALGNFPPHDWTNVLKSGILK 153

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q21217	GABT_CAEEL	2, ., 6, ., 1, ., 2, 2	0.5398	0.4745	0.2318	yes	N/A
P80404	GABT_HUMAN	2, ., 6, ., 1, ., 2, 2	0.5142	0.4449	0.21	yes	N/A
P80147	GABT_PIG	2, ., 6, ., 1, ., 2, 2	0.5047	0.4449	0.21	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	236
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	3e-40
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	9e-19
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	3e-15
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	2e-13
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	2e-12
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	9e-10
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	6e-09
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	7e-09
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	3e-08
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	5e-08
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	9e-08
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	8e-07
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	2e-05
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	3e-05
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	3e-05
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	0.001
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	0.001
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	0.003
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	0.004

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score =  143 bits (362), Expect = 3e-40
 Identities = 58/110 (52%), Positives = 82/110 (74%)

Query: 49  EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
           EP+ P + TE+PGP++KA  ++L+++  + +V    DY+KS GNYLVDVDGN +LD+Y+Q
Sbjct: 7   EPTGPLMKTEIPGPKSKAAMKQLNEVFDARAVHFLADYEKSRGNYLVDVDGNRLLDLYSQ 66

Query: 109 ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK 158
           ISS+P+GYN+PALLK    P    T +NRPALG FPS DW ++L+  +LK
Sbjct: 67  ISSIPIGYNNPALLKAAQSPEMATTLINRPALGNFPSKDWAKILKEGILK 116

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 84.1 bits (208), Expect = 9e-19
 Identities = 32/50 (64%), Positives = 40/50 (80%)

Query: 162 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP 211
           +V    DY+KS GNYLVDVDGN +LD+Y+QISS+P+GYN+PALLK    P
Sbjct: 37  AVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSP 86

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 85  DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFP 144
              K+ G +L DVDG   LD  + I+ V LG+ HP +++   + A   T  +  A    P
Sbjct: 1   FITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQADKLTHTSFRAFTTEP 60

Query: 145 SGDW--------PQLLENVLLKQSGSVS 164
           +           P  L+ V    SGS +
Sbjct: 61  ALQLAEKLAQLTPGGLDRVFFMNSGSEA 88

Length = 338

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 47  LSEPSHPQLVTEVPGPQTKAL-KQKLSQLQQSGSVSLF-VDYQKSFGNYLVDVDGNHILD 104
            S P  P +VTE PGP+   L +++   L +S     F +   ++ G YL DVDGN  LD
Sbjct: 1   QSLPEEPDIVTEAPGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLD 60

Query: 105 VYTQISSVPLGYNHPALLK 123
             + I+ + LG+NHP +++
Sbjct: 61  FLSGIAVLNLGHNHPRVVE 79

Length = 447

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 6/69 (8%)

Query: 168 DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTF 227
              K+ G +L DVDG   LD  + I+ V LG+ HP +++   + A      DK +H    
Sbjct: 1   FITKAKGVWLYDVDGRRYLDFLSGIAVVNLGHCHPKIVQAVKEQA------DKLTHTSFR 54

Query: 228 ARTEPPDTQ 236
           A T  P  Q
Sbjct: 55  AFTTEPALQ 63

Length = 338

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score = 57.6 bits (140), Expect = 9e-10
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 133 TFVNRPALGVFPSG----DWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDV 188
           +    P +     G    +  +  E  L +  G     +   ++ G YL DVDGN  LD 
Sbjct: 2   SLPEEPDIVTEAPGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLDF 61

Query: 189 YTQISSVPLGYNHPALLK 206
            + I+ + LG+NHP +++
Sbjct: 62  LSGIAVLNLGHNHPRVVE 79

Length = 447

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFART 230
           ++ G YL DVDGN  LD  + I  + LG+NHP +++   +         K +H       
Sbjct: 24  RAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQL------AKLTHFSLGFFY 77

Query: 231 EPP 233
             P
Sbjct: 78  NEP 80

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score = 54.9 bits (133), Expect = 7e-09
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)

Query: 88  KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGD 147
           ++ G YL DVDGN  LD  + I  + LG+NHP +++   +     T  +      F   +
Sbjct: 24  RAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLG----FFYNE 79

Query: 148 WPQLLENVLLKQSG 161
               L  +LL  + 
Sbjct: 80  PAVELAELLLALTP 93

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 8/63 (12%)

Query: 82  LFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPALLKIFDDPA----TVKTFVN 136
           L +D ++S G+YLVD   G   LD++T  +S  LG NHPAL    DDP       +  +N
Sbjct: 26  LVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALA---DDPEFRAELGRAALN 82

Query: 137 RPA 139
           +P+
Sbjct: 83  KPS 85

Length = 443

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 165 LFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
           L +D ++S G+YLVD   G   LD++T  +S  LG NHPAL    DDP 
Sbjct: 26  LVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALA---DDPE 71

Length = 443

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 48  SEPSHPQLVTEVPGPQTKAL-KQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVY 106
             P  P++V E+PGP+ + + ++    L QS      +  ++  G ++ DVDGN  LD  
Sbjct: 1   DMPRRPRIVVELPGPKAREIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFN 60

Query: 107 TQISSVPLGYNHPALLK 123
             I+   +G+ HP ++K
Sbjct: 61  AGIAVTNVGHAHPKVVK 77

Length = 441

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score = 48.8 bits (116), Expect = 8e-07
 Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)

Query: 52  HPQLVTEVPGPQTKALKQKLSQLQQSG-SVSLF-VDYQKSFGNYLVDVDGNHILDVYTQI 109
           +P++V + PGP+ K L ++  ++   G  V LF +  ++ FG  + DVDGN  +D     
Sbjct: 3   YPKIVVKPPGPKAKELIEREKRVLSPGIGVKLFPLVPKRGFGALIEDVDGNVFIDFLAGA 62

Query: 110 SSVPLGYNHPALLK 123
           ++   GY+HP L+K
Sbjct: 63  AAASTGYSHPKLVK 76

Length = 457

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 23/75 (30%), Positives = 46/75 (61%), Gaps = 1/75 (1%)

Query: 50  PSHPQLVTEVPGPQTKALKQKLSQLQQSG-SVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
           P   +LVTE+PGP+++AL ++ +    +G   +L V   ++ G  + DVDGN ++D+ + 
Sbjct: 5   PQSRRLVTEIPGPKSQALAERRAAAVAAGVGSTLPVYVARAGGGIVEDVDGNRLIDLGSG 64

Query: 109 ISSVPLGYNHPALLK 123
           I+   +G + P +++
Sbjct: 65  IAVTSVGNSAPRVVE 79

Length = 443

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 82  LFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPAL 121
           L +D  +S G+ LVD  DG   LD+++  +S+ LG NHPAL
Sbjct: 19  LVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPAL 59

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 165 LFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPAL 204
           L +D  +S G+ LVD  DG   LD+++  +S+ LG NHPAL
Sbjct: 19  LVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPAL 59

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 86  YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD 127
             K+ G ++ DV+GN  LD      ++ LG+NHP +L+   D
Sbjct: 44  IAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQD 85

Length = 459

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD 210
             K+ G ++ DV+GN  LD      ++ LG+NHP +L+   D
Sbjct: 44  IAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQD 85

Length = 459

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHI 224
           L V   +  G Y+ D  G   LD    I+   LG+ HPAL++       +K   +K  H+
Sbjct: 24  LPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVE------ALKEQAEKLWHV 77

Query: 225 P 225
            
Sbjct: 78  S 78

Length = 404

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 15/42 (35%), Positives = 21/42 (50%)

Query: 82  LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
           L V   +  G Y+ D  G   LD    I+   LG+ HPAL++
Sbjct: 24  LPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVE 65

Length = 404

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	236
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.89
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.86
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.86
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.84
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.83
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.82
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.82
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.81
KOG1405|consensus	484		99.81
KOG1404|consensus	442		99.79
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.79
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.78
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.77
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.77
PRK07482	461	hypothetical protein; Provisional	99.77
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.76
PRK07046	453	aminotransferase; Validated	99.76
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.75
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.75
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.75
PRK06062	451	hypothetical protein; Provisional	99.75
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.74
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.74
PRK07678	451	aminotransferase; Validated	99.74
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.74
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.73
PRK05965	459	hypothetical protein; Provisional	99.73
PRK06541	460	hypothetical protein; Provisional	99.73
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.73
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.73
PRK07483	443	hypothetical protein; Provisional	99.72
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.72
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.72
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.72
PLN02624	474	ornithine-delta-aminotransferase	99.72
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.72
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.71
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.71
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.71
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.71
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.71
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.71
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.7
PRK06105	460	aminotransferase; Provisional	99.7
PRK12403	460	putative aminotransferase; Provisional	99.7
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.7
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.7
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.69
PRK07036	466	hypothetical protein; Provisional	99.69
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.69
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.69
PRK07480	456	putative aminotransferase; Validated	99.69
PRK06917	447	hypothetical protein; Provisional	99.69
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.69
PRK08297	443	L-lysine aminotransferase; Provisional	99.69
PRK07481	449	hypothetical protein; Provisional	99.68
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.68
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.68
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.66
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.66
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.66
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.65
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.65
KOG1402|consensus	427		99.64
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.64
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.63
PLN00144	382	acetylornithine transaminase	99.63
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.62
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.61
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.6
PRK06148	1013	hypothetical protein; Provisional	99.59
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.58
PRK06149	972	hypothetical protein; Provisional	99.57
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.57
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.56
KOG1401|consensus	433		99.56
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.54
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.51
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.47
PRK02627	396	acetylornithine aminotransferase; Provisional	99.45
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.44
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.39
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.36
KOG1403|consensus	452		99.35
PRK04260	375	acetylornithine aminotransferase; Provisional	99.3
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.19
PRK07505	402	hypothetical protein; Provisional	99.17
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.12
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	98.95
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	98.63
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	98.62
KOG1404|consensus	442		98.61
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	98.61
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	98.6
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	98.6
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	98.59
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	98.57
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	98.56
PRK04612	408	argD acetylornithine transaminase protein; Provisi	98.56
PRK07482	461	hypothetical protein; Provisional	98.55
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	98.55
PRK06062	451	hypothetical protein; Provisional	98.55
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	98.55
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	98.54
PRK06541	460	hypothetical protein; Provisional	98.53
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	98.52
PRK08297	443	L-lysine aminotransferase; Provisional	98.51
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	98.51
KOG1402|consensus	427		98.51
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	98.51
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	98.51
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	98.51
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	98.5
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	98.5
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	98.5
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	98.5
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	98.49
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	98.49
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	98.49
PRK07481	449	hypothetical protein; Provisional	98.49
PRK05965	459	hypothetical protein; Provisional	98.49
PRK09792	421	4-aminobutyrate transaminase; Provisional	98.48
PRK06917	447	hypothetical protein; Provisional	98.48
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	98.48
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	98.48
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	98.47
PRK07483	443	hypothetical protein; Provisional	98.47
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	98.47
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	98.46
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	98.46
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	98.45
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	98.45
PRK07678	451	aminotransferase; Validated	98.44
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	98.44
PRK12403	460	putative aminotransferase; Provisional	98.44
PLN00144	382	acetylornithine transaminase	98.43
PRK07036	466	hypothetical protein; Provisional	98.42
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	98.42
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	98.41
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	98.41
PRK07480	456	putative aminotransferase; Validated	98.41
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	98.4
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	98.39
PLN02624	474	ornithine-delta-aminotransferase	98.39
PRK06105	460	aminotransferase; Provisional	98.38
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	98.38
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	98.37
PLN02760	504	4-aminobutyrate:pyruvate transaminase	98.37
PRK01278	389	argD acetylornithine transaminase protein; Provisi	98.35
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	98.34
PRK07046	453	aminotransferase; Validated	98.32
PRK03715	395	argD acetylornithine transaminase protein; Provisi	98.32
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	98.27
PRK08088	425	4-aminobutyrate aminotransferase; Validated	98.27
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	98.26
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	98.24
PTZ00125	400	ornithine aminotransferase-like protein; Provision	98.2
KOG1405|consensus	484		98.18
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	98.17
KOG1401|consensus	433		98.16
PRK02936	377	argD acetylornithine aminotransferase; Provisional	98.11
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	98.09
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	98.08
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	97.94
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	97.88
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	97.85
PRK02627	396	acetylornithine aminotransferase; Provisional	97.84
PRK03244	398	argD acetylornithine aminotransferase; Provisional	97.84
PRK06148	1013	hypothetical protein; Provisional	97.8
PRK07179	407	hypothetical protein; Provisional	97.77
PRK04260	375	acetylornithine aminotransferase; Provisional	97.72
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	97.59
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	97.54
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	97.48
PRK06149	972	hypothetical protein; Provisional	97.45
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	97.33
PRK07505	402	hypothetical protein; Provisional	97.19
PLN02822	481	serine palmitoyltransferase	96.89
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	96.8
KOG1403|consensus	452		96.35
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	96.11
PRK13393	406	5-aminolevulinate synthase; Provisional	96.05
PRK09064	407	5-aminolevulinate synthase; Validated	93.76
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	91.38
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	88.87
PRK13392	410	5-aminolevulinate synthase; Provisional	83.65
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	81.12

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.89  E-value=9.5e-24  Score=198.15  Aligned_cols=148  Identities=24%  Similarity=0.308  Sum_probs=118.7

Q ss_pred             CCCCcccccCCChhHHHHHHHHhccccC-Ccc-ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhc
Q psy237           50 PSHPQLVTEVPGPQTKALKQKLSQLQQS-GSV-SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  127 (236)
Q Consensus        50 ~~~~~v~~~~pgp~s~~l~~~~~~~~~~-~~~-~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~  127 (236)
                      +..+++.+..++++..+++++.++++.. ... .+|+++++|+|+||||+|||+||||++|+++.++|||||+|++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~p~~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~   83 (447)
T COG0160           4 PEEPDIVTEAPGPKALELIERREEALARSYGRFRFPLVIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKR   83 (447)
T ss_pred             cccccccccCCCcchHHHHHHHHHHhccccccccCcceEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHH
Confidence            3455667778899999999998887765 334 68999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--hhh------ccccccccCC
Q psy237          128 PATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--DVY------TQISSVPLGY  199 (236)
Q Consensus       128 q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--D~~------sg~~~~~lGh  199 (236)
                      |++++.|++...+.+++..+++|+|.+    ..|...   ..+++|+++|+||+|++++  -..      -.+....||.
T Consensus        84 q~~~~~h~~~~~~~~e~~v~~ae~L~~----~~p~~~---~~~~~f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~  156 (447)
T COG0160          84 QLAKLNHTHTRDLYYEPYVELAEKLTA----LAPGSG---LKKVFFGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGR  156 (447)
T ss_pred             HHHHhhcccCCcccchhHHHHHHHHHH----hCCccc---CCeEEecCCcHHHHHHHHHHHHHHhCCCcEEEECCccccc
Confidence            999999988777766777788888777    356522   2369999999999999988  111      1244455666


Q ss_pred             CCHHH
Q psy237          200 NHPAL  204 (236)
Q Consensus       200 ~~p~i  204 (236)
                      +.-.+
T Consensus       157 T~gal  161 (447)
T COG0160         157 TLGAL  161 (447)
T ss_pred             chhhH
Confidence            65444

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.86  E-value=9.2e-23  Score=187.86  Aligned_cols=113  Identities=22%  Similarity=0.204  Sum_probs=97.6

Q ss_pred             HHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCC
Q psy237           64 TKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF  143 (236)
Q Consensus        64 s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~  143 (236)
                      ++...+...+++...+.++|+++++|+|+||||.+||+||||.+|+++++||||||+|++|+++|+++++|+++ .+.++
T Consensus         6 ~~~~~~~~~~~~~~~Y~~~~~~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn-~~~~~   84 (404)
T COG4992           6 TAATIELFMKYLMPTYGRLPVVIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSN-LFYNE   84 (404)
T ss_pred             HHHHHHHHHHhhhcccCcCceeEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccc-ccCCh
Confidence            45667777888888888889999999999999999999999999999999999999999999999999999886 45577


Q ss_pred             CCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          144 PSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       144 ~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +..+++++|.+    ..| +.   + +++|+|||+||+|.+++
T Consensus        85 ~~~~la~~L~~----~s~-~~---d-~vff~NSGaEA~EaAiK  118 (404)
T COG4992          85 PQAELAEKLVE----LSP-FA---D-RVFFCNSGAEANEAALK  118 (404)
T ss_pred             HHHHHHHHHHh----hCc-cc---c-EEEEcCCcHHHHHHHHH
Confidence            77777777776    344 21   3 69999999999999887

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.86  E-value=2.7e-22  Score=190.28  Aligned_cols=134  Identities=45%  Similarity=0.707  Sum_probs=109.6

Q ss_pred             CCCCCCCcccccCCChhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhh
Q psy237           47 LSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFD  126 (236)
Q Consensus        47 ~~~~~~~~v~~~~pgp~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~  126 (236)
                      |.+|+.+.+++++|+++|++++++..+++.....++|+++++|+|+||||+|||+||||++|++++++||+||+|++|++
T Consensus         5 ~~~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~   84 (464)
T TIGR00699         5 PNEPTGPLMKTEIPGPKSKAAMKQLNEVFDARAVHFLADYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQ   84 (464)
T ss_pred             CCCCCCCccccCCCCccHHHHHHHHHhhhcccCcccceEEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHH
Confidence            67889999999999999999999998887554457899999999999999999999999999999999999999999999


Q ss_pred             cc--ccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          127 DP--ATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       127 ~q--~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +|  ...+.+..  .+.+++..+++++|.+.+....|...   + +++|+++|+||+|.+++
T Consensus        85 ~q~~~~~l~~~~--~~~~~~~~~la~~l~~~l~~~~p~~~---~-~v~f~~SGsEAvE~AlK  140 (464)
T TIGR00699        85 SPEMATTLINRP--ALGNFPSKDWAKILKEGILKVAPKGQ---D-QVWTGMSGSDANELAFK  140 (464)
T ss_pred             HHHHHHhhcccc--cCCcHHHHHHHHHHHHhHHhhCCCCc---C-EEEEeCCcHHHHHHHHH
Confidence            96  43444332  35566667778877664444555321   2 68999999999998877

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.84  E-value=1.6e-21  Score=183.96  Aligned_cols=149  Identities=19%  Similarity=0.237  Sum_probs=115.6

Q ss_pred             CCCCCcccccCCChhHHHHHHHHhccccCCc-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhc
Q psy237           49 EPSHPQLVTEVPGPQTKALKQKLSQLQQSGS-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  127 (236)
Q Consensus        49 ~~~~~~v~~~~pgp~s~~l~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~  127 (236)
                      .++.|++.+++|+++|++++++.++++.... .++|+++++|+|+||||+|||+||||++|+|+.++||+||+|++|+++
T Consensus         2 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~   81 (441)
T PRK05769          2 MPRRPRIVVELPGPKAREIIERDEKYLAQSTRRWYPLVIERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKE   81 (441)
T ss_pred             CCCCccccccCCCccHHHHHHHHHHhhCcccccCCCeeEEecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHH
Confidence            3567888899999999999888777766533 357899999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCC
Q psy237          128 PATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGY  199 (236)
Q Consensus       128 q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh  199 (236)
                      |++++.+.....+.+++..+++++|.+    ..|...   ..+++|.++|+||+|.+++        +.+..+....||+
T Consensus        82 ql~~~~~~~~~~~~~~~~~~lAe~L~~----~~p~~~---~~~v~f~~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~  154 (441)
T PRK05769         82 QAEKFLHYSLTDFYYEPAVELAERLVE----IAPGGF---EKKVFFTNSGTESNEAAIKIARYHTGRKYIIAFLGAFHGR  154 (441)
T ss_pred             HHHhccCccCcccCCHHHHHHHHHHHH----hCCCCC---CCEEEECCchHHHHHHHHHHHHHHhCCCeEEEECCCcCCc
Confidence            999987765444445555566666555    445311   1158999999999999886        3334455567777


Q ss_pred             CCHHH
Q psy237          200 NHPAL  204 (236)
Q Consensus       200 ~~p~i  204 (236)
                      ..-.+
T Consensus       155 t~~~l  159 (441)
T PRK05769        155 TYGSL  159 (441)
T ss_pred             cHHHH
Confidence            75544

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.83  E-value=2.6e-21  Score=182.71  Aligned_cols=145  Identities=17%  Similarity=0.202  Sum_probs=113.5

Q ss_pred             CcccccCCChhHHHHHHHHhccccCCc-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           53 PQLVTEVPGPQTKALKQKLSQLQQSGS-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        53 ~~v~~~~pgp~s~~l~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ..+++++|+++|++++++..++++... ...|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|+++
T Consensus         6 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~   85 (451)
T PRK06918          6 AKVNEQIPGPKAASLLERRQNIVPKGVSNGIPTFAQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQ   85 (451)
T ss_pred             cchhccCCCCCHHHHHHHHHHhhccccccCCCceEEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHh
Confidence            356788999999999999988887643 4457899999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHH
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPA  203 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~  203 (236)
                      +.+.+...+.+++..+++++|.+    ..|...   ..+++|+++|+||+|.+++        .-+..+....||...-.
T Consensus        86 ~~~~~~~~~~~~~~~~la~~L~~----~~p~~~---~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~  158 (451)
T PRK06918         86 YIHTGFNVMMYEPYIELAEKLAA----LAPGSF---DKKVLFLNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMT  158 (451)
T ss_pred             ccCccccccccHHHHHHHHHHHH----hCCCCC---CCEEEEcCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhh
Confidence            87765434445566666666665    455321   1258999999999999887        33334555677776654


Q ss_pred             H
Q psy237          204 L  204 (236)
Q Consensus       204 i  204 (236)
                      +
T Consensus       159 l  159 (451)
T PRK06918        159 M  159 (451)
T ss_pred             h
Confidence            4

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.82  E-value=8.7e-21  Score=176.30  Aligned_cols=136  Identities=21%  Similarity=0.228  Sum_probs=113.5

Q ss_pred             ChhHHHHHHHHhccccCC-------ccc---cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccc
Q psy237           61 GPQTKALKQKLSQLQQSG-------SVS---LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPAT  130 (236)
Q Consensus        61 gp~s~~l~~~~~~~~~~~-------~~~---~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~  130 (236)
                      .++|++|++++++++++.       +.+   +|+++++|+|+||||+|||+|||++++|+.+.|||+||.|++||++|++
T Consensus         4 ~~~S~~l~~~A~~~~pGGvnspvra~~~v~~~P~fi~~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~   83 (432)
T COG0001           4 FPKSEALFERAKKVIPGGVNSPVRAFKSVGGYPIFIERGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLE   83 (432)
T ss_pred             ccchHHHHHHHhhhCCCCCCccccccCCCCCCCeeEEeccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHH
Confidence            367999999999999871       122   8999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCH
Q psy237          131 VKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHP  202 (236)
Q Consensus       131 ~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p  202 (236)
                      +.....   .+++...+++|.+.+    ..|..+     ++.|.+||+||.-.++.        |.+..+..+.|||.+.
T Consensus        84 ~G~~fg---~Pte~Ei~~Aell~~----~~p~~e-----~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~  151 (432)
T COG0001          84 RGLSFG---APTELEVELAELLIE----RVPSIE-----KVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDS  151 (432)
T ss_pred             hcCCCC---CCCHHHHHHHHHHHH----hcCccc-----EEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccH
Confidence            975432   344445555655554    456544     47899999999988776        8888899999999999


Q ss_pred             HHHHhh
Q psy237          203 ALLKIF  208 (236)
Q Consensus       203 ~i~~A~  208 (236)
                      .+++|-
T Consensus       152 ~lv~ag  157 (432)
T COG0001         152 LLVKAG  157 (432)
T ss_pred             HHhhcC
Confidence            999986

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=6.7e-21  Score=180.58  Aligned_cols=125  Identities=22%  Similarity=0.274  Sum_probs=99.3

Q ss_pred             cccccCCChhHHHHHHHHhccccCCc--cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           54 QLVTEVPGPQTKALKQKLSQLQQSGS--VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        54 ~v~~~~pgp~s~~l~~~~~~~~~~~~--~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      .+.+++|+++|++++++..+++....  .++|+++++|+|+||||.|||+||||++|+++.++||+||+|++|+++|+++
T Consensus         5 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~   84 (457)
T PRK05639          5 KIVVKPPGPKAKELIEREKRVLSPGIGVKLFPLVPKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVAL   84 (457)
T ss_pred             cccccCCCCCHHHHHHHHHHhhccccCcCCCCceEEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHh
Confidence            45567889999999988877766533  3468999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.+.+...+.+++..+++++|.+    ..|...   + +++|+++|+||+|.+++
T Consensus        85 ~~~~~~~~~~~~~~~~lae~L~~----~~p~~~---~-~v~f~~SGsEA~e~Alk  131 (457)
T PRK05639         85 IQHSMIGYTHSERAIRVAEKLAE----ISPIEN---P-KVLFGLSGSDAVDMAIK  131 (457)
T ss_pred             ccccccCccCCHHHHHHHHHHHh----hCCCCc---C-EEEEeCchHHHHHHHHH
Confidence            87655433334444555665555    445321   2 68999999999999877

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.81  E-value=1.4e-20  Score=177.52  Aligned_cols=138  Identities=17%  Similarity=0.200  Sum_probs=103.4

Q ss_pred             cCCChhHHHHHHHHhccccCCc-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccccccc
Q psy237           58 EVPGPQTKALKQKLSQLQQSGS-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVN  136 (236)
Q Consensus        58 ~~pgp~s~~l~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~  136 (236)
                      .+++++|.+++++..++++... .++|+++++|+|+||||+|||+||||++|+|+.+|||+||+|++|+++|++++.+..
T Consensus        13 ~~~~~~s~~~~~~~~~~~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~   92 (443)
T PRK06058         13 EIPGPKSQALAERRAAAVAAGVGSTLPVYVARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTC   92 (443)
T ss_pred             CCCCccHHHHHHHHHHhhccccccCCCceEEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCcc
Confidence            4566788888888777776543 357899999999999999999999999999999999999999999999999876554


Q ss_pred             CCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCH
Q psy237          137 RPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHP  202 (236)
Q Consensus       137 ~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p  202 (236)
                      ...+.+++..+++++|.+    ..|...   ..+++|.++|+||++.+++        +-+..+....||+..-
T Consensus        93 ~~~~~~~~~~~la~~l~~----~~p~~~---~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~  159 (443)
T PRK06058         93 FMVTPYEGYVAVAEQLNR----LTPGDH---EKRSALFNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNL  159 (443)
T ss_pred             ccccCCHHHHHHHHHHHH----hCCCCC---CCEEEEeCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHH
Confidence            333344444555555554    455321   1257899999999999888        3333445556666543

>KOG1405|consensus

Probab=99.81  E-value=1e-20  Score=170.92  Aligned_cols=159  Identities=40%  Similarity=0.645  Sum_probs=133.9

Q ss_pred             CCCCCCcccc-cCCChhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhh
Q psy237           48 SEPSHPQLVT-EVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFD  126 (236)
Q Consensus        48 ~~~~~~~v~~-~~pgp~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~  126 (236)
                      .||.+|.|+| .||||+|+++.+++.++.......|++.++++-|.||+|+|||++||++++++++++|||||.++++++
T Consensus        23 ~ep~gP~ikTesIPGPks~~l~kel~~v~~t~~v~F~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~  102 (484)
T KOG1405|consen   23 FEPDGPSIKTESIPGPKSQELKKELDKVQDTEAVHFFVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQ  102 (484)
T ss_pred             cCCCCCccccccCCCchhHHHHHHHhHhhcccceEEehhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhc
Confidence            3789999999 699999999999999999998888999999999999999999999999999999999999999999988


Q ss_pred             ccccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchhhhhcccccc---ccCCCCHH
Q psy237          127 DPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSV---PLGYNHPA  203 (236)
Q Consensus       127 ~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~---~lGh~~p~  203 (236)
                      +--..-..++++.+++.|..++++.+.+.++..+|...   + .+..+..|++++|++|+-.+.-+-..   ..|..-.+
T Consensus       103 ~p~~~~~lvnRPALg~fP~kd~~~~l~~~ll~~APKG~---~-~v~tm~cGs~aNEnA~K~afiwy~~k~rg~~~~s~~e  178 (484)
T KOG1405|consen  103 QPQNATMLVNRPALGNFPPKDFAEKLRQSLLSIAPKGQ---K-QVITMLCGSCANENAYKTAFIWYRAKERGQAGFSAEE  178 (484)
T ss_pred             ChHHHHHHhccccccCCChhhHHHHHHHHHHhhCcchH---H-HHHHHhccccccHHHHHHHHHHHHhhcCCCCCCCHHH
Confidence            75555567899999999999999999998888888654   2 46778899999999998544422222   45555555


Q ss_pred             HHHhhhc
Q psy237          204 LLKIFDD  210 (236)
Q Consensus       204 i~~A~~~  210 (236)
                      .-..+..
T Consensus       179 ~eScm~n  185 (484)
T KOG1405|consen  179 LESCMIN  185 (484)
T ss_pred             HHHHHhc
Confidence            5555544

>KOG1404|consensus

Probab=99.79  E-value=5.7e-20  Score=167.72  Aligned_cols=116  Identities=19%  Similarity=0.151  Sum_probs=94.4

Q ss_pred             hhHHHHHHHHhccccC---CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC
Q psy237           62 PQTKALKQKLSQLQQS---GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP  138 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~---~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~  138 (236)
                      +.+...++.+++.+..   .+..-|++|++|+|+||||++|++|||+++|++++++|||||+|++|+.+|+.++.|... 
T Consensus         9 ~~~~~~~~~~~~~ls~~~~~~~~~Pl~Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~-   87 (442)
T KOG1404|consen    9 PSTDQVLQKRRAFLSPGLTSYYKKPLVIVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTS-   87 (442)
T ss_pred             cchhhHHHHhhhcCCcceeccccCCceEEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeec-
Confidence            4444555555555443   234458999999999999999999999999999999999999999999999999988764 


Q ss_pred             CCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          139 ALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       139 ~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+.++|..++++.|.+    ..|+..    .+++|.|+|+||+|.+++
T Consensus        88 ~~~~~pi~~~Ae~L~s----~~P~~l----~~vfF~nsGsEANelal~  127 (442)
T KOG1404|consen   88 GYLNPPIHDLAEALVS----KLPGDL----KVVFFVNSGSEANELALK  127 (442)
T ss_pred             cccCCcHHHHHHHHHH----hCCCCc----eEEEEecCCchHHHHHHH
Confidence            5668888888888877    356543    258999999999999876

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.79  E-value=7.8e-20  Score=174.02  Aligned_cols=133  Identities=15%  Similarity=0.163  Sum_probs=104.8

Q ss_pred             hhHHHHHHHHhccccCC-------cc---ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           62 PQTKALKQKLSQLQQSG-------SV---SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~-------~~---~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ++|+++++++++++++.       ..   ++|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|+++
T Consensus        51 ~~S~~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~  130 (474)
T PLN02482         51 TKSEEIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKK  130 (474)
T ss_pred             hHHHHHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhh
Confidence            68999999999999872       11   468999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHH
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPA  203 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~  203 (236)
                      +.+.   .+.+++..+++|+|.+    ..|..+     ++.|+++|+||++.+++        +-+..+....||+.+..
T Consensus       131 ~~~~---~~~~~~~~~lAe~l~~----~~p~~~-----~v~f~~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~  198 (474)
T PLN02482        131 GTSF---GAPCLLENVLAEMVID----AVPSVE-----MVRFVNSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSF  198 (474)
T ss_pred             CCCC---CCCCHHHHHHHHHHHH----hCCCCC-----EEEEeCChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchh
Confidence            7643   2345455556665555    455533     58999999999998876        33344566788887655


Q ss_pred             HHH
Q psy237          204 LLK  206 (236)
Q Consensus       204 i~~  206 (236)
                      +..
T Consensus       199 ~~~  201 (474)
T PLN02482        199 LVK  201 (474)
T ss_pred             hhh
Confidence            544

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.78  E-value=1.1e-19  Score=171.63  Aligned_cols=132  Identities=13%  Similarity=0.061  Sum_probs=100.5

Q ss_pred             hHHHHHHHHhccccCCc--cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCC
Q psy237           63 QTKALKQKLSQLQQSGS--VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPAL  140 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~~--~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~  140 (236)
                      ++.+++++.++++...+  ..+|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~   81 (443)
T PRK08360          2 KPLEIIERYSKVISPANRVTYYPLVPVKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTPIYG   81 (443)
T ss_pred             CHHHHHHHHHHhcccccccccCCceEEecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCcccccc
Confidence            35677877777766533  3568999999999999999999999999999999999999999999999999887665444


Q ss_pred             CCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCH
Q psy237          141 GVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHP  202 (236)
Q Consensus       141 ~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p  202 (236)
                      .+++..+++++|.+    ..|...   + +++|.++|+||+|.+++        .-+..+....||+..-
T Consensus        82 ~~~~~~~la~~L~~----~~p~~~---~-~v~f~~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~  143 (443)
T PRK08360         82 FPVEPLLLAEKLIE----IAPGDN---P-KVSFGLSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYG  143 (443)
T ss_pred             CcHHHHHHHHHHHH----hCCCCC---C-EEEEcCCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHH
Confidence            45555666666665    345321   2 58999999999999887        2223344455666543

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.77  E-value=2.2e-19  Score=168.75  Aligned_cols=131  Identities=19%  Similarity=0.219  Sum_probs=102.3

Q ss_pred             hhHHHHHHHHhccccCC-------cc----ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccc
Q psy237           62 PQTKALKQKLSQLQQSG-------SV----SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPAT  130 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~-------~~----~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~  130 (236)
                      ++|.++++++++++++.       ..    ++|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++
T Consensus         4 ~~s~~~~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~   83 (428)
T PRK12389          4 TKSEALHQEALEHIVGGVNSPSRSYKAVGGGAPVVMERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAAE   83 (428)
T ss_pred             hhhHHHHHHHHhhCCCCCCCccccccccCCCCCeEEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHH
Confidence            67899999999999862       11    46899999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCH
Q psy237          131 VKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHP  202 (236)
Q Consensus       131 ~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p  202 (236)
                      ++.+.   .+.++...+++++|.+    ..|...     ++.|.++|+||++.+++        ..+..+....||....
T Consensus        84 ~~~~~---~~~~~~~~~la~~l~~----~~p~~~-----~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~  151 (428)
T PRK12389         84 NGVLY---GTPTELEIEFAKMLKE----AIPSLE-----KVRFVNSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDL  151 (428)
T ss_pred             hCCcc---CCCCHHHHHHHHHHHH----hCCCCc-----EEEEeCCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHH
Confidence            87543   3455555566666555    345432     58999999999999887        2233455567776654


Q ss_pred             HH
Q psy237          203 AL  204 (236)
Q Consensus       203 ~i  204 (236)
                      .+
T Consensus       152 ~~  153 (428)
T PRK12389        152 VL  153 (428)
T ss_pred             HH
Confidence            44

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.77  E-value=2e-19  Score=169.91  Aligned_cols=135  Identities=16%  Similarity=0.134  Sum_probs=101.2

Q ss_pred             hHHHHHHHHhccccCCc--cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCC
Q psy237           63 QTKALKQKLSQLQQSGS--VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPAL  140 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~~--~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~  140 (236)
                      ++++++++..+++....  ..+|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.....+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~~~~   82 (445)
T PRK08593          3 KAHQLIQEDEHYFAKSGRIKYYPLVIDHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTPAYM   82 (445)
T ss_pred             hHHHHHHHHHHhhccccccCCCCceEEeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCcccccc
Confidence            45677777777765432  3468999999999999999999999999999999999999999999999999877654445


Q ss_pred             CCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHHH
Q psy237          141 GVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPAL  204 (236)
Q Consensus       141 ~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~i  204 (236)
                      .+++..+++++|.+    ..|...   ..++.|.++|+|+++.+++        .-+..+....||...-.+
T Consensus        83 ~~~~~~~lae~L~~----~~p~~~---~~~v~f~~SGseA~e~AiklAr~~tgr~~ii~~~~~YHG~t~~al  147 (445)
T PRK08593         83 YHEPLVRLAKKLCE----LAPGDF---EKRVTFGLSGSDANDGIIKFARAYTGRPYIISFTNAYHGSTYGSL  147 (445)
T ss_pred             CCHHHHHHHHHHHH----hCCCCC---CCEEEECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCcHHHH
Confidence            56566666666655    455431   1258999999999999887        222234455677664443

>PRK07482 hypothetical protein; Provisional

Probab=99.77  E-value=2e-19  Score=170.64  Aligned_cols=117  Identities=12%  Similarity=0.101  Sum_probs=90.2

Q ss_pred             hhHHHHHHHHhccccC-Cc-----c---ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           62 PQTKALKQKLSQLQQS-GS-----V---SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~-~~-----~---~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      .+|+++.++..+++.. ..     .   ..|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~   82 (461)
T PRK07482          3 QKIDELLAWDRDHFFHPSTHLGDHARGELPGRIVEGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKEL   82 (461)
T ss_pred             ccHHHHHHhhhhhccCCcccccccccccCCCeeEEeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhc
Confidence            3567777766555432 21     0   2378999999999999999999999999999999999999999999999998


Q ss_pred             ccccCC-CCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          133 TFVNRP-ALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       133 ~~~~~~-~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+.+.. .+.+++..+++++|.+    ..|...   + +++|.++|+||+|.+++
T Consensus        83 ~~~~~~~~~~~~~~~~lAe~L~~----~~p~~~---~-~v~f~~sGSEAve~AlK  129 (461)
T PRK07482         83 AYYHTYVGHGTEASITLSKRIID----RAPAGM---S-KVYYGLSGSDANETQIK  129 (461)
T ss_pred             CccccccccCCHHHHHHHHHHHH----hCCCCc---C-EEEEeCchHHHHHHHHH
Confidence            765432 3456666666666665    355321   2 58899999999998887

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.76  E-value=3.2e-19  Score=167.66  Aligned_cols=115  Identities=12%  Similarity=0.077  Sum_probs=87.1

Q ss_pred             HHHHHHHhccccCCc-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCC
Q psy237           65 KALKQKLSQLQQSGS-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF  143 (236)
Q Consensus        65 ~~l~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~  143 (236)
                      ++++++...++.... ...|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++++.+.....+.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~p~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~   83 (425)
T PRK07495          4 TSLTDRRNAAISRGVGMTTQIYADRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTCHQVVPYE   83 (425)
T ss_pred             HHHHHHHHhhhccccCcCCCeeEEeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcccCccCCH
Confidence            445555544444333 3348899999999999999999999999999999999999999999999999876543334455


Q ss_pred             CCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          144 PSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       144 ~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +..+++++|.+    ..|...   ..+++|+++|+||+|.+++
T Consensus        84 ~~~~la~~l~~----~~p~~~---~~~v~f~~SGseA~e~Alk  119 (425)
T PRK07495         84 NYVRLAERLNA----LVPGDF---AKKTIFVTTGAEAVENAVK  119 (425)
T ss_pred             HHHHHHHHHHH----hCCCCC---CCEEEECCchHHHHHHHHH
Confidence            55556666555    445321   1258999999999998877

>PRK07046 aminotransferase; Validated

Probab=99.76  E-value=5.1e-19  Score=167.59  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=104.9

Q ss_pred             hhHHHHHHHHhccccCCc---------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           62 PQTKALKQKLSQLQQSGS---------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~~---------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      ++|.++++++++++++..         .++|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++
T Consensus        28 ~~S~~l~~ra~~~~p~g~~~~~~~~~~~~~p~~~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~  107 (453)
T PRK07046         28 PRSRALAARAAQHLLGGVPMHWMNDWPTPFPLFVAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRG  107 (453)
T ss_pred             hhhHHHHHHHHhhCCCCcccccccccCCCCCCeEEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHHHHhC
Confidence            679999999999998732         15689999999999999999999999999999999999999999999999987


Q ss_pred             ccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHHH
Q psy237          133 TFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPAL  204 (236)
Q Consensus       133 ~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~i  204 (236)
                      .+.   .+.++...+++|++.+    ..+ .+     ++.|++||+||++.+++        +.+..+....||+.+..+
T Consensus       108 ~~~---~~~~~~~~~lAe~l~~----~~~-~~-----~v~F~nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l  174 (453)
T PRK07046        108 LTT---MLPSEDAAWVGEELAR----RFG-LP-----YWQVATTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVF  174 (453)
T ss_pred             CCC---CCCCHHHHHHHHHHHH----HhC-CC-----EEEEECCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhH
Confidence            543   3345555666666665    233 22     58999999999998877        344456667888866555


Q ss_pred             HH
Q psy237          205 LK  206 (236)
Q Consensus       205 ~~  206 (236)
                      ..
T Consensus       175 ~~  176 (453)
T PRK07046        175 VD  176 (453)
T ss_pred             hh
Confidence            43

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.75  E-value=4.7e-19  Score=168.09  Aligned_cols=119  Identities=16%  Similarity=0.027  Sum_probs=92.6

Q ss_pred             CChhHHHHHHHHhccccC-Cc------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           60 PGPQTKALKQKLSQLQQS-GS------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        60 pgp~s~~l~~~~~~~~~~-~~------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      |.-.++++.++..+++.. ..      ...|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l   88 (460)
T PRK06916          9 PSYTYEELSEKNKAYVWHPFTQMKDYLEEDPLIIERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKI   88 (460)
T ss_pred             CCCChHHHHHHHhhccccccccccccccCCCeeEEeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhC
Confidence            333456777776666432 11      24589999999999999999999999999999999999999999999999998


Q ss_pred             ccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          133 TFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       133 ~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+.+...+.+++..+++++|.+    ..|...   + +++|+++|+||++.+++
T Consensus        89 ~~~~~~~~~~~~~~~lae~L~~----~~p~~~---~-~v~f~~SGseAve~Alk  134 (460)
T PRK06916         89 AHSTLLGLANVPSILLAEKLIE----VVPEGL---K-KVFYSDSGATAVEIAIK  134 (460)
T ss_pred             CCccccccCCHHHHHHHHHHHH----hCCCCC---C-EEEEeCCcHHHHHHHHH
Confidence            7765545566666666666665    345321   2 58999999999998776

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.75  E-value=5.6e-19  Score=165.64  Aligned_cols=116  Identities=14%  Similarity=0.094  Sum_probs=89.8

Q ss_pred             HHHHHHHHhccccCCc-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCC
Q psy237           64 TKALKQKLSQLQQSGS-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGV  142 (236)
Q Consensus        64 s~~l~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~  142 (236)
                      +.+++++..++++... ..+|+++++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+.....+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~   82 (421)
T PRK06777          3 NSELNQRRLEATPRGVGVMCDFYAERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTAYQIVPY   82 (421)
T ss_pred             hHHHHHHHHHhcccccCcCCCeeEEeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcccccccccCC
Confidence            4566777666665532 234789999999999999999999999999999999999999999999999987665434455


Q ss_pred             CCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          143 FPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       143 ~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ++..+++++|.+    ..|...   ..++.|.++|+||+|.+++
T Consensus        83 ~~~~~la~~l~~----~~p~~~---~~~~~f~~sGseA~e~Alk  119 (421)
T PRK06777         83 ASYVTLAERINA----LAPIDG---PAKTAFFTTGAEAVENAVK  119 (421)
T ss_pred             hHHHHHHHHHHH----hCCCCC---CceEEEeCCcHHHHHHHHH
Confidence            555566666655    344211   1157889999999999887

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.75  E-value=7.6e-19  Score=165.57  Aligned_cols=130  Identities=13%  Similarity=0.055  Sum_probs=99.8

Q ss_pred             hhHHHHHHHHhccccCC-------cc---ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           62 PQTKALKQKLSQLQQSG-------SV---SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~-------~~---~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ++|+++++++++++++.       ..   ++|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|+++
T Consensus         5 ~~s~~l~~~a~~~~p~g~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~   84 (433)
T PRK00615          5 QEMTHTFSEACQYFPGGVNSPVRACRSVGITPPIVSSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAER   84 (433)
T ss_pred             HHHHHHHHHHHhhCCCCcCCCcccccccCCCCceEEEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHHHh
Confidence            67899999999999872       22   478999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCH
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHP  202 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p  202 (236)
                      +...   .+.+++..+++++|.+    ..|...    .++.|.++|+||++.+++        .-+..+....||+.+.
T Consensus        85 ~~~~---~~~~~~~~~la~~L~~----~~~~~~----~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~td~  152 (433)
T PRK00615         85 GTSY---GLTSEQEILFAEELFS----YLGLED----HKIRFVSSGTEATMTAVRLARGITGRSIIIKFLGCYHGHADT  152 (433)
T ss_pred             CCCC---CCCCHHHHHHHHHHHH----hCCCCc----CEEEEeCchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCCcc
Confidence            6532   3445555566666655    344321    258999999999998877        1222344456666543

>PRK06062 hypothetical protein; Provisional

Probab=99.75  E-value=7.6e-19  Score=166.27  Aligned_cols=115  Identities=17%  Similarity=0.153  Sum_probs=91.0

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      +.|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|++++.+++. .+.+++..+++++|.+    ..
T Consensus        34 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-~~~~~~~~~lae~L~~----~~  108 (451)
T PRK06062         34 INPMVIAGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVAP-AHANDARSEAARLIAE----RA  108 (451)
T ss_pred             CCCceEEeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcCC-ccCCHHHHHHHHHHHH----hC
Confidence            468899999999999999999999999999999999999999999999999887664 4556666677777666    34


Q ss_pred             CceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHHH
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPAL  204 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~i  204 (236)
                      |...   + +++|+++|+||++.+++        .-+..+....||...-.+
T Consensus       109 p~~~---~-~v~f~~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~al  156 (451)
T PRK06062        109 PGDL---S-KVFFTNGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAI  156 (451)
T ss_pred             CCCC---C-EEEEcCChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHH
Confidence            5421   2 58999999999999877        223334455677765444

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.74  E-value=7e-19  Score=165.12  Aligned_cols=134  Identities=18%  Similarity=0.233  Sum_probs=95.5

Q ss_pred             HHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCC
Q psy237           66 ALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPS  145 (236)
Q Consensus        66 ~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~  145 (236)
                      .++++....+..+..++|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|++++.+++...+.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~   84 (425)
T PRK09264          5 DIFERLESEVRSYCRSFPVVFDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRDGITHGLDMHTTAK   84 (425)
T ss_pred             hHHHHHHHHHhccCCCCCccEEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhcccccccccCcHHH
Confidence            45666655555555567899999999999999999999999999999999999999999999999876655444456566


Q ss_pred             CChhhhhHhhhhhccCceeeeeeeeeee-cceEEeccccchh--------hhhccccccccCCCCHHH
Q psy237          146 GDWPQLLENVLLKQSGSVSLFVDYQKSF-GNYLVDVDGNHIL--------DVYTQISSVPLGYNHPAL  204 (236)
Q Consensus       146 ~elAE~Lae~Ll~~ap~~~~~i~~~~~~-G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~i  204 (236)
                      .+++++|.+.+.  .|...   ..++.| +++|+||+|.+++        +-+..+....||...-.+
T Consensus        85 ~~lae~l~~~~~--~~~~~---~~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~l  147 (425)
T PRK09264         85 REFLETFEETIL--KPRGL---DYKVQFTGPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSL  147 (425)
T ss_pred             HHHHHHHHHhhc--CCcCC---CceEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHH
Confidence            667776666221  22111   113444 6899999998877        222234445566654333

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.74  E-value=8.3e-19  Score=164.08  Aligned_cols=128  Identities=14%  Similarity=0.160  Sum_probs=90.9

Q ss_pred             hccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhh
Q psy237           72 SQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQL  151 (236)
Q Consensus        72 ~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~  151 (236)
                      ..++..+..++|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|+++..+.+...+.+++..+++++
T Consensus         7 ~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~   86 (412)
T TIGR02407         7 ESEVRSYCRSFPTVFEKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADDGIIHSLDMATEAKREFLET   86 (412)
T ss_pred             HHHHhccCCCCCceEEecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhccceeccccCcHHHHHHHHH
Confidence            33444444567899999999999999999999999999999999999999999999999766655444445666667777


Q ss_pred             hHhhhhhccCc-eeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHHH
Q psy237          152 LENVLLKQSGS-VSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPAL  204 (236)
Q Consensus       152 Lae~Ll~~ap~-~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~i  204 (236)
                      |.+.+.  .|. ..   ..+.+++++|+|++|.+++        .-+-.+....||...-.+
T Consensus        87 l~~~~~--~~~~~~---~~~~f~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al  143 (412)
T TIGR02407        87 FNEIIL--KPRGLD---YKVQFPGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSL  143 (412)
T ss_pred             HHHhcc--CccCCC---ceEEEeCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHH
Confidence            666211  221 11   1123446999999998877        222334455666654433

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK07678 aminotransferase; Validated

Probab=99.74  E-value=1.2e-18  Score=164.85  Aligned_cols=114  Identities=19%  Similarity=0.181  Sum_probs=89.2

Q ss_pred             hHHHHHHHHhccccCC---cc-ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC
Q psy237           63 QTKALKQKLSQLQQSG---SV-SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP  138 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~---~~-~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~  138 (236)
                      +|.+++++..+++...   +. ..|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|++++.+... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-   84 (451)
T PRK07678          6 QTDELLAKDEQYVWHGMKPYNPNATMVVAKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL-   84 (451)
T ss_pred             CHHHHHHHhhcccCCCccccccCCCeeEEeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc-
Confidence            4677777766664321   22 247899999999999999999999999999999999999999999999998876543 


Q ss_pred             CCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          139 ALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       139 ~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+.+++..+++++|.+    ..|...     +++|+++|+||++.+++
T Consensus        85 ~~~~~~~~~lae~l~~----~~~~~~-----~v~f~~sGseA~e~Alk  123 (451)
T PRK07678         85 TQSHEPAIKLAEKLNE----WLGGEY-----VIFFSNSGSEANETAFK  123 (451)
T ss_pred             ccCCHHHHHHHHHHHH----hCCCCC-----EEEEeCCcHHHHHHHHH
Confidence            3456666666666665    345422     58899999999998776

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.74  E-value=1.3e-18  Score=161.12  Aligned_cols=113  Identities=19%  Similarity=0.253  Sum_probs=90.8

Q ss_pred             hHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCC
Q psy237           63 QTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGV  142 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~  142 (236)
                      ++++++++..+++.....++|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.++ .+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~-~~~~   81 (396)
T PRK04073          3 KSEKIIELTNHYGAHNYHPLPIVISEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTSR-AFHS   81 (396)
T ss_pred             hHHHHHHHHHHhcccccCCCCceEEeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccccc-ccCC
Confidence            567888887777766556778999999999999999999999999999999999999999999999998876553 3444


Q ss_pred             CCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          143 FPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       143 ~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ++..+++++|.+    ..+. +     +..+.++|+||++.+++
T Consensus        82 ~~~~~l~~~l~~----~~~~-~-----~~~~~~SGseA~e~Alk  115 (396)
T PRK04073         82 DQLGPWYEKVAK----LTGK-D-----MVLPMNTGAEAVETAIK  115 (396)
T ss_pred             HHHHHHHHHHHh----cCCC-C-----eEEEcCChHHHHHHHHH
Confidence            455555555555    3332 2     47889999999998766

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.73  E-value=8.1e-19  Score=164.55  Aligned_cols=97  Identities=18%  Similarity=0.160  Sum_probs=86.0

Q ss_pred             ceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCc
Q psy237           83 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGS  162 (236)
Q Consensus        83 p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~  162 (236)
                      |.+|++|+|+||||.|||+|||.+||+|++++||+||+|.+|+++|++++.|++...+.+.|..+++++|.+    .+|.
T Consensus        27 ~~~i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~----~aP~  102 (449)
T COG0161          27 PRVIVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKLAE----LAPE  102 (449)
T ss_pred             ceeeeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHHHH----hCCC
Confidence            788999999999999999999999999999999999999999999999999998888888887777777766    4663


Q ss_pred             eeeeeeeeeeecceEEeccccchh
Q psy237          163 VSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       163 ~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .++  + +++|.++|+|++|.+++
T Consensus       103 ~~l--~-~vFf~~sGSeAvEtAlK  123 (449)
T COG0161         103 GGL--D-HVFFTDSGSEAVETALK  123 (449)
T ss_pred             CCc--c-EEEEeCCchHHHHHHHH
Confidence            321  2 79999999999999887

>PRK05965 hypothetical protein; Provisional

Probab=99.73  E-value=1.3e-18  Score=164.97  Aligned_cols=97  Identities=14%  Similarity=0.192  Sum_probs=79.7

Q ss_pred             cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhcc
Q psy237           82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      .|+++++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+.... .+.+++..+++++|.+    ..
T Consensus        28 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~----~~  103 (459)
T PRK05965         28 GVTVLASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAE----RA  103 (459)
T ss_pred             CCceEEeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHh----hC
Confidence            478999999999999999999999999999999999999999999999998765532 3445556666666665    45


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...   + +++|.++|+||+|.+++
T Consensus       104 p~~~---~-~v~f~~sGSEAve~AlK  125 (459)
T PRK05965        104 PGSL---N-HVYFTLGGSDAVDSAVR  125 (459)
T ss_pred             CCCc---C-EEEEeCChhHHHHHHHH
Confidence            5321   2 58999999999999886

>PRK06541 hypothetical protein; Provisional

Probab=99.73  E-value=1.6e-18  Score=164.38  Aligned_cols=116  Identities=13%  Similarity=0.033  Sum_probs=89.6

Q ss_pred             hHHHHHHHHhcccc-CCc---c--c-cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccc
Q psy237           63 QTKALKQKLSQLQQ-SGS---V--S-LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFV  135 (236)
Q Consensus        63 ~s~~l~~~~~~~~~-~~~---~--~-~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~  135 (236)
                      +|+++.++.++++. ++.   .  . -|+++++|+|+||||.|||+||||++|+++++|||+||+|++|+++|++++.+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~   87 (460)
T PRK06541          8 SDTDLQALAKRHLWMHFTRHGAYIDAPVPVIVRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFF   87 (460)
T ss_pred             cHHHHHHHhhcccccCccCccccccCCCceEEeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCc
Confidence            35667776566653 211   1  1 267899999999999999999999999999999999999999999999998776


Q ss_pred             cCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          136 NRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       136 ~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ....+.+++..+++++|.+    ..|...   + +++|.++|+||+|.+++
T Consensus        88 ~~~~~~~~~~~~la~~l~~----~~p~~~---~-~v~f~~sGseAve~Alk  130 (460)
T PRK06541         88 PLWSYAHPPAIELAERLAA----LAPGDL---N-RVFFTTGGSEAVESAWK  130 (460)
T ss_pred             cccccCCHHHHHHHHHHHH----hCCCCc---C-EEEEcCCcHHHHHHHHH
Confidence            5444556666666666665    344321   2 58999999999998776

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.73  E-value=1.6e-18  Score=162.35  Aligned_cols=120  Identities=18%  Similarity=0.113  Sum_probs=91.7

Q ss_pred             CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhh
Q psy237           78 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL  157 (236)
Q Consensus        78 ~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll  157 (236)
                      ...++|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++++.+.....+.+++..+++++|.+   
T Consensus        11 ~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~---   87 (420)
T TIGR00700        11 VGVTLPVFAARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTCFMVTPYEGYVALAEKLNR---   87 (420)
T ss_pred             cCCCCCeeEEeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCccccccCChHHHHHHHHHHH---
Confidence            34567899999999999999999999999999999999999999999999999987655433445555566666555   


Q ss_pred             hccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHHH
Q psy237          158 KQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPAL  204 (236)
Q Consensus       158 ~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~i  204 (236)
                       ..|...   ..++.|.++|+||+|.+++        .-+..+....||...-.+
T Consensus        88 -~~p~~~---~~~v~f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~  138 (420)
T TIGR00700        88 -IAPGSG---PKKSVFFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTM  138 (420)
T ss_pred             -hCCCCC---CCEEEEeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHH
Confidence             455321   1258999999999999887        223335556777765544

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.73  E-value=2.1e-18  Score=162.28  Aligned_cols=109  Identities=17%  Similarity=0.135  Sum_probs=85.3

Q ss_pred             HHHHHHHHhccccCC-------c----cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           64 TKALKQKLSQLQQSG-------S----VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        64 s~~l~~~~~~~~~~~-------~----~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      |.+|++++.+++++.       .    .+.|+++++|+|+||||+|||+||||++|+|+.+|||+||+|++|+++|++++
T Consensus         1 s~~l~~~a~~~~p~g~~~~~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~   80 (431)
T PRK06209          1 SQLLQSRLHALIPGGAHTYAKGDDQYPELAPGFIQRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDG   80 (431)
T ss_pred             CHHHHHHHHhhCCCCCCCCccccccCCCCCCeEEEeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhC
Confidence            467888888888861       1    13568999999999999999999999999999999999999999999999986


Q ss_pred             ccccCCCCCCCCC--CChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          133 TFVNRPALGVFPS--GDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       133 ~~~~~~~~~~~~~--~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..     +.+...  .+++++|.+    ..|...     +++|+++|+||++.+++
T Consensus        81 ~~-----~~~~~~~~~~la~~l~~----~~p~~~-----~v~f~~sGseA~e~Alk  122 (431)
T PRK06209         81 CN-----FTRPSAIELDAAESFLE----LIDGAD-----MVKFCKNGSDATSAAVR  122 (431)
T ss_pred             cC-----CCCCCHHHHHHHHHHHH----hCCccc-----eEEEecCHHHHHHHHHH
Confidence            52     222222  234555554    455432     58899999999998877

>PRK07483 hypothetical protein; Provisional

Probab=99.72  E-value=1.9e-18  Score=163.19  Aligned_cols=103  Identities=14%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             cCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhh
Q psy237           76 QSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENV  155 (236)
Q Consensus        76 ~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~  155 (236)
                      ......+|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|++++.+++...+.+++..+++++|.+ 
T Consensus         6 ~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~-   84 (443)
T PRK07483          6 HRSPRATLPVAVAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTSFFTTEPAEALADRLVA-   84 (443)
T ss_pred             cccccCCCceEEeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH-
Confidence            3344457899999999999999999999999999999999999999999999999987655433455555556666555 


Q ss_pred             hhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          156 LLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       156 Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                         ..|...   + +++|.++|+||+|.+++
T Consensus        85 ---~~p~~~---~-~v~f~~sGsEAve~Alk  108 (443)
T PRK07483         85 ---AAPAGL---E-HVYFVSGGSEAVEAALK  108 (443)
T ss_pred             ---hCCCCC---C-EEEEcCCcHHHHHHHHH
Confidence               345321   2 58999999999998876

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.72  E-value=3.3e-18  Score=160.43  Aligned_cols=114  Identities=16%  Similarity=0.114  Sum_probs=86.6

Q ss_pred             HHHHHHhccccCCc-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCC
Q psy237           66 ALKQKLSQLQQSGS-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFP  144 (236)
Q Consensus        66 ~l~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~  144 (236)
                      +++++...++.... ..+|+++++|+|+||||+|||+||||++|+|++++||+||+|++|+++|++++.+.+...+.+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~~~~~~~~   84 (421)
T PRK09792          5 EFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYES   84 (421)
T ss_pred             HHHHHHHhhcccccccCCCeeEEeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcccCccCCHH
Confidence            44554444443322 33468999999999999999999999999999999999999999999999998776544445656


Q ss_pred             CCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          145 SGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       145 ~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+++++|.+    ..|...   ..++.|.++|+||+|.+++
T Consensus        85 ~~~la~~l~~----~~p~~~---~~~~~f~~sGseA~e~Alk  119 (421)
T PRK09792         85 YVTLAEKINA----LAPVSG---QAKTAFFTTGAEAVENAVK  119 (421)
T ss_pred             HHHHHHHHHH----hCCCCC---CceEEEeCChHHHHHHHHH
Confidence            6666666655    344221   1258899999999998877

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.72  E-value=2.1e-18  Score=161.39  Aligned_cols=98  Identities=18%  Similarity=0.142  Sum_probs=81.2

Q ss_pred             ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhh
Q psy237           79 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK  158 (236)
Q Consensus        79 ~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~  158 (236)
                      ..++|+++++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+... .+.+++..+++++|.+    
T Consensus        19 ~~~~~~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~L~~----   93 (408)
T PRK04612         19 YRPRQVVLERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTSN-VFYSAPPLKLAEELVT----   93 (408)
T ss_pred             cCCCCceEEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccc-ccCCHHHHHHHHHHHh----
Confidence            45678999999999999999999999999999999999999999999999999877653 3455566666666665    


Q ss_pred             ccCceeeeeeeeeeecceEEeccccchh
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..|...     +++|+++|+|++|.+++
T Consensus        94 ~~~~~~-----~v~f~~sGseA~e~Alk  116 (408)
T PRK04612         94 ASRFAE-----KVFLCNSGTEANEAAIK  116 (408)
T ss_pred             hCCCCC-----EEEEcCchHHHHHHHHH
Confidence            344322     58999999999998875

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.72  E-value=2.9e-18  Score=160.63  Aligned_cols=98  Identities=16%  Similarity=0.107  Sum_probs=80.5

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      +.|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|++++.+.....+.+++..+++++|.+    ..
T Consensus        23 ~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~----~~   98 (423)
T PRK05964         23 PPPIPIVRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVIFAGFTHEPAERLAQRLVA----LT   98 (423)
T ss_pred             CCCeeEEeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCccccccCCHHHHHHHHHHHH----hC
Confidence            46899999999999999999999999999999999999999999999999987655334556555666666655    35


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...   + ++.|+++|+||++.+++
T Consensus        99 p~~~---~-~v~f~~sGseA~e~A~k  120 (423)
T PRK05964         99 PGGL---D-HVFFSDSGSVAVEVALK  120 (423)
T ss_pred             CCCC---C-EEEEeCCcHHHHHHHHH
Confidence            5321   2 58999999999998876

>PLN02624 ornithine-delta-aminotransferase

Probab=99.72  E-value=5.2e-18  Score=161.48  Aligned_cols=114  Identities=18%  Similarity=0.169  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCC
Q psy237           62 PQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      ..++.++++.++++...+.++|+++++|+|+||||+||++||||++|++++++||+||+|++|+++|++++.+.+. .+.
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~~~~~-~~~  115 (474)
T PLN02624         37 DSSAHLIELEEKYSAHNYHPIPVVFSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLTLSSR-AFY  115 (474)
T ss_pred             cchHHHHHHHHHhhccccCCCCceEEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcCCccc-ccC
Confidence            3456788887777666555678999999999999999999999999999999999999999999999999876654 355


Q ss_pred             CCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +++..+++++|.+    ..+ .+     ++.+.++|+|+++.+++
T Consensus       116 ~~~~~~la~~L~~----~~~-~~-----~~~f~~SGseA~e~Alk  150 (474)
T PLN02624        116 NDKFPEFAEYLTS----MFG-YD-----MVLPMNTGAEGVETAIK  150 (474)
T ss_pred             CHHHHHHHHHHHh----hcC-CC-----eEEEeCChHHHHHHHHH
Confidence            6666666666666    233 22     47889999999998875

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.72  E-value=3.3e-18  Score=160.67  Aligned_cols=115  Identities=17%  Similarity=0.124  Sum_probs=88.3

Q ss_pred             HHHHHHHHhccccCCccc-cc-eeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCC
Q psy237           64 TKALKQKLSQLQQSGSVS-LF-VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        64 s~~l~~~~~~~~~~~~~~-~p-~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      +.+++++...++.+.... +| +++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|++++.+.+...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~~~~   84 (433)
T PRK08117          5 WSDLVERYPQLLAPALAKDHPNLPVVKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSGVIY   84 (433)
T ss_pred             HHHHHHHHHHHhhhhccccCCCceEEeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccccC
Confidence            456677766666553222 43 8899999999999999999999999999999999999999999999988765533344


Q ss_pred             CCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ++...+++++|.+    ..|+..   + ++.|.++|+||++.+++
T Consensus        85 ~~~~~~la~~L~~----~~~~~~---~-~v~f~~SGseA~e~Alk  121 (433)
T PRK08117         85 YESILKLAEELAE----ITPGGL---D-CFFFSNSGAEAIEGALK  121 (433)
T ss_pred             CHHHHHHHHHHHH----hCCCCC---C-EEEEeCcHHHHHHHHHH
Confidence            5555555655555    454322   2 58899999999999886

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.71  E-value=3.2e-18  Score=160.77  Aligned_cols=98  Identities=17%  Similarity=0.064  Sum_probs=81.2

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      .+|+++++|+|+||||.|||+||||++|+++.+|||+||+|++|+++|++++.++....+.+++..+++++|.+    ..
T Consensus        21 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~----~~   96 (422)
T PRK05630         21 VRNRLVTSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLN----LT   96 (422)
T ss_pred             CCCeeEEeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHh----hC
Confidence            46889999999999999999999999999999999999999999999999987765434556666666666665    34


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...   + +++|+++|+||+|.+++
T Consensus        97 p~~~---~-~v~f~~SGseA~e~Alk  118 (422)
T PRK05630         97 DNGL---D-HVFYSDSGSVSVEVAIK  118 (422)
T ss_pred             CCCc---C-EEEEeCCcHHHHHHHHH
Confidence            4311   2 58999999999999876

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.71  E-value=7e-18  Score=160.05  Aligned_cols=136  Identities=20%  Similarity=0.175  Sum_probs=95.0

Q ss_pred             HHHHHHHHhcc--ccC-CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCC
Q psy237           64 TKALKQKLSQL--QQS-GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPAL  140 (236)
Q Consensus        64 s~~l~~~~~~~--~~~-~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~  140 (236)
                      ++.++++..++  ... +..++|+++++|+|+||||.|||+||||++|+++.++||+||+|++|+++|+++..+.+...+
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~~~~~~~~   98 (459)
T PRK06931         19 NETYLARQAEFESNVRSYPRKLPLAIAKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGLPLHTLDL   98 (459)
T ss_pred             hHHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhcccccccc
Confidence            44666665433  222 223578999999999999999999999999999999999999999999999987543332234


Q ss_pred             CCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHHH
Q psy237          141 GVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPAL  204 (236)
Q Consensus       141 ~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~i  204 (236)
                      .++...+++++|.+    ..|..... ...+++.++|+||+|.+++        +-+..+....||+..-.+
T Consensus        99 ~~~~~~~lAe~L~~----~~p~~~~~-~~~~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~al  165 (459)
T PRK06931         99 TTPLKDAFSEYLLS----LLPGQGKE-YCLQFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHGAL  165 (459)
T ss_pred             CCHHHHHHHHHHHH----hCCCcccc-ceEEEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHH
Confidence            45555556665554    45532100 0135777999999999887        334445566777765544

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.71  E-value=3.6e-18  Score=161.13  Aligned_cols=118  Identities=19%  Similarity=0.112  Sum_probs=87.1

Q ss_pred             cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           80 VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        80 ~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      .++|+++++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+.+...+.++...+++++|.+    .
T Consensus        19 ~~~p~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~----~   94 (442)
T TIGR00709        19 RKLPTAFAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLN----I   94 (442)
T ss_pred             cCCCceEEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHH----h
Confidence            456889999999999999999999999999999999999999999999999877665444555555666666655    3


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCH
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHP  202 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p  202 (236)
                      .|..... ..+++++++|+||+|.+++        .-+..+....||...-
T Consensus        95 ~p~~~~~-~~~~f~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~  144 (442)
T TIGR00709        95 IPKRKMD-YKLQFPGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIG  144 (442)
T ss_pred             CCCcCCC-ccEEEeCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHH
Confidence            4432000 1135667999999999877        2233344455665543

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.71  E-value=5.1e-18  Score=160.79  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=81.3

Q ss_pred             cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccC
Q psy237           82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSG  161 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap  161 (236)
                      .|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.....+.+++..+++++|.+    ..|
T Consensus        36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~----~~p  111 (453)
T PRK06943         36 PLLPVARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAMLAGCTHEPAIELAERLAA----LTG  111 (453)
T ss_pred             CCceEEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHH----hCC
Confidence            4789999999999999999999999999999999999999999999999987766545566666666666665    344


Q ss_pred             ceeeeeeeeeeecceEEeccccchh
Q psy237          162 SVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       162 ~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ...   + +++|+++|+||+|.+++
T Consensus       112 ~~~---~-~v~f~~sGseAve~AlK  132 (453)
T PRK06943        112 GTL---G-HAFFASDGASAVEIALK  132 (453)
T ss_pred             CCC---C-EEEEeCCCHHHHHHHHH
Confidence            321   2 58999999999999877

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.71  E-value=6.4e-18  Score=160.88  Aligned_cols=118  Identities=14%  Similarity=0.102  Sum_probs=89.1

Q ss_pred             hhHHHHHHHHhccc-cCCcc------cc-ceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccc
Q psy237           62 PQTKALKQKLSQLQ-QSGSV------SL-FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKT  133 (236)
Q Consensus        62 p~s~~l~~~~~~~~-~~~~~------~~-p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~  133 (236)
                      +.++++.++..+++ .+...      .+ |+.+++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~   97 (472)
T PRK08742         18 QTAEHWRQRDLAVLWHPCTQMREHPHTLPLVPIARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELE   97 (472)
T ss_pred             CcHHHHHHhhhcccccCCcccccccccCCCeeEEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCC
Confidence            34566666655553 22111      22 367999999999999999999999999999999999999999999999887


Q ss_pred             cccCCCCCCCCCCChhhhhHhhhhhccCce----eeeeeeeeeecceEEeccccchh
Q psy237          134 FVNRPALGVFPSGDWPQLLENVLLKQSGSV----SLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       134 ~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~----~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.....+.+++..+++++|.+    ..|..    .+  + +++|.++|+||+|.+++
T Consensus        98 ~~~~~~~~~~~~~~lae~L~~----~~p~~~~~~~~--~-~v~f~~sGSEAvE~AlK  147 (472)
T PRK08742         98 QVMLAGFTHEPAVQLAEQLLA----IAPRQDGRAPL--S-KVFYADNGSAGVEVALK  147 (472)
T ss_pred             CccccccCCHHHHHHHHHHHH----hCCCcccCCCC--C-EEEEeCCchHHHHHHHH
Confidence            765545666666667776665    34421    11  2 68999999999998876

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.71  E-value=4.4e-18  Score=160.19  Aligned_cols=95  Identities=15%  Similarity=0.094  Sum_probs=79.0

Q ss_pred             eeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCce
Q psy237           84 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSV  163 (236)
Q Consensus        84 ~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~  163 (236)
                      +++++|+|+||||.|||+||||++|+|+.++||+||+|++|+++|++++.+.....+.+++..+++++|.+    ..|..
T Consensus        28 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~----~~p~~  103 (429)
T PRK06173         28 YPVERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLE----ILPPS  103 (429)
T ss_pred             ceEEeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHh----hCCCC
Confidence            46999999999999999999999999999999999999999999999987765444556666666766665    34532


Q ss_pred             eeeeeeeeeecceEEeccccchh
Q psy237          164 SLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       164 ~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .   + +++|+++|+||+|.+++
T Consensus       104 ~---~-~v~f~~sGseAve~Alk  122 (429)
T PRK06173        104 L---N-KIFFADSGSVAVEVAMK  122 (429)
T ss_pred             c---C-EEEEeCCchHHHHHHHH
Confidence            1   2 68999999999999876

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.70  E-value=9.5e-18  Score=159.39  Aligned_cols=136  Identities=16%  Similarity=0.181  Sum_probs=93.2

Q ss_pred             HHHHHHHHhcc--ccCCc-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCC
Q psy237           64 TKALKQKLSQL--QQSGS-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPAL  140 (236)
Q Consensus        64 s~~l~~~~~~~--~~~~~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~  140 (236)
                      ++.++++..++  ....+ .++|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|+++..+.....+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~  103 (464)
T PRK06938         24 NSPLLERQSRRESNARSYPRRIPLALKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHTLDL  103 (464)
T ss_pred             HHHHHHHHHhhhhhccccccCCCceEEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhccccccc
Confidence            34566665433  22222 3578999999999999999999999999999999999999999999999986443332245


Q ss_pred             CCCCCCChhhhhHhhhhhccCceeeeeeeeeee-cceEEeccccchh--------hhhccccccccCCCCHHH
Q psy237          141 GVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSF-GNYLVDVDGNHIL--------DVYTQISSVPLGYNHPAL  204 (236)
Q Consensus       141 ~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~-G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~i  204 (236)
                      .++...+++++|.+    ..|... ....++.+ .++|+||++.+++        ..+..+....||...-.+
T Consensus       104 ~~~~~~~la~~L~~----~~p~~~-~~~~~v~f~~~SGSEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~al  171 (464)
T PRK06938        104 TTPVKDQFVQDLFA----SLPEAF-AREAKIQFCGPTGTDAVEAALKLVKTATGRSTVLSFQGGYHGMSQGAL  171 (464)
T ss_pred             CCHHHHHHHHHHHH----hCcccc-cccceEEEeCCCcHHHHHHHHHHHHHhhCCCeEEEECCccCCccHHHH
Confidence            56566666666655    344211 00013444 5899999999877        223334555677665444

>PRK06105 aminotransferase; Provisional

Probab=99.70  E-value=5.8e-18  Score=160.63  Aligned_cols=98  Identities=15%  Similarity=0.104  Sum_probs=79.2

Q ss_pred             cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhcc
Q psy237           82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      .|+++++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+.+.. .+.+++..+++++|.+    ..
T Consensus        30 ~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~----~~  105 (460)
T PRK06105         30 GPLVIERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVA----MA  105 (460)
T ss_pred             CCceEEeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHH----hC
Confidence            588999999999999999999999999999999999999999999999998765432 2345555556665555    45


Q ss_pred             CceeeeeeeeeeecceEEeccccchhh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHILD  187 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~lD  187 (236)
                      |...   + +++|.++|+||+|.+++=
T Consensus       106 p~~~---~-~v~f~~SGseAve~AlKl  128 (460)
T PRK06105        106 PVPM---S-KVFFTNSGSEANDTVVKL  128 (460)
T ss_pred             CCCC---C-EEEEeCCcHHHHHHHHHH
Confidence            5321   2 589999999999998873

>PRK12403 putative aminotransferase; Provisional

Probab=99.70  E-value=7e-18  Score=160.05  Aligned_cols=97  Identities=16%  Similarity=0.034  Sum_probs=77.9

Q ss_pred             cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhcc
Q psy237           82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      .|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.+.. ...+++..+++++|.+    ..
T Consensus        36 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~----~~  111 (460)
T PRK12403         36 GPRVMVRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYNMFFHTTHPAVIELSELLFS----LL  111 (460)
T ss_pred             CCceEEeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCeecccccCCHHHHHHHHHHHH----hC
Confidence            578999999999999999999999999999999999999999999999998765432 2234445555665555    44


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...   + ++.+.++|+||++.+++
T Consensus       112 p~~~---~-~v~f~~SGseA~e~Aik  133 (460)
T PRK12403        112 PGHY---S-HAIYTNSGSEANEVLIR  133 (460)
T ss_pred             CCCc---C-EEEEeCCcHHHHHHHHH
Confidence            5321   2 58899999999998776

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.70  E-value=4.8e-18  Score=160.55  Aligned_cols=98  Identities=16%  Similarity=0.130  Sum_probs=81.5

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      +.|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.+...+.+++..+++++|.+    ..
T Consensus        30 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~----~~  105 (445)
T PRK09221         30 AAPRLLVSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAFQMGHPLAFELAERLAE----LA  105 (445)
T ss_pred             CCCceEEeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccccccCCHHHHHHHHHHHH----hC
Confidence            45789999999999999999999999999999999999999999999999987766544556666666666665    34


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...   + +++|.++|+|++|.+++
T Consensus       106 p~~~---~-~v~f~~sGseAve~Alk  127 (445)
T PRK09221        106 PGGL---D-HVFFTNSGSESVDTALK  127 (445)
T ss_pred             CCCC---C-EEEEeCCcHHHHHHHHH
Confidence            5321   2 58999999999999876

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.70  E-value=5.1e-18  Score=159.73  Aligned_cols=95  Identities=15%  Similarity=0.069  Sum_probs=78.7

Q ss_pred             eeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCce
Q psy237           84 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSV  163 (236)
Q Consensus        84 ~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~  163 (236)
                      +.+++|+|+||||.|||+||||++|+|+++|||+||+|++|+++|++++.+.....+.+++..+++++|.+    ..|..
T Consensus        27 ~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~----~~p~~  102 (428)
T PRK07986         27 YPVVSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHPPAIELCRKLVA----MTPQP  102 (428)
T ss_pred             eeEEeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccccccCCHHHHHHHHHHHh----hCCCC
Confidence            67999999999999999999999999999999999999999999999987765434456666666666665    34532


Q ss_pred             eeeeeeeeeecceEEeccccchh
Q psy237          164 SLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       164 ~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .   + ++++.++|+||+|.+++
T Consensus       103 ~---~-~v~f~~SGsEAve~Alk  121 (428)
T PRK07986        103 L---E-CVFLADSGSVAVEVAMK  121 (428)
T ss_pred             c---C-EEEEeCCcHHHHHHHHH
Confidence            1   2 68999999999998776

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.69  E-value=5.5e-18  Score=160.07  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=80.6

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      +.|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.....+.+++..+++++|.+    ..
T Consensus        27 ~~p~~~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~----~~  102 (442)
T PRK13360         27 KAPRLLVAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAFQMGHPKAFELANRIAE----IA  102 (442)
T ss_pred             CCCceEEeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccCCcCCHHHHHHHHHHHH----hC
Confidence            35789999999999999999999999999999999999999999999999887665444556565666666655    45


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...   + +++|.++|+||+|.+++
T Consensus       103 p~~~---~-~v~f~~sGseA~e~Alk  124 (442)
T PRK13360        103 PGGL---N-HVFFTNSGSESVDTALK  124 (442)
T ss_pred             CCCC---C-EEEEeCCcHHHHHHHHH
Confidence            5321   2 58899999999998876

>PRK07036 hypothetical protein; Provisional

Probab=99.69  E-value=1e-17  Score=159.14  Aligned_cols=98  Identities=14%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCC-CCCCCCCChhhhhHhhhhhc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPA-LGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~-~~~~~~~elAE~Lae~Ll~~  159 (236)
                      ..|+++++|+|+||||+|||+||||++|++++++||+||+|++|+++|++++.+..... +.+++..+++++|.+    .
T Consensus        32 ~~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~----~  107 (466)
T PRK07036         32 EGSLVIVEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTPFGDMTNAPAAELAAKLAE----L  107 (466)
T ss_pred             CCCceEEeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccccccccCCHHHHHHHHHHHH----h
Confidence            35789999999999999999999999999999999999999999999999887655432 556666666666665    3


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .|...   + +++|.++|+||++.+++
T Consensus       108 ~p~~~---~-~v~f~~sGseAve~Alk  130 (466)
T PRK07036        108 APGDL---N-HVFLTTGGSTAVDSALR  130 (466)
T ss_pred             CCCCc---C-EEEEeCCchHHHHHHHH
Confidence            45421   2 58999999999999877

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.69  E-value=1.5e-17  Score=155.19  Aligned_cols=112  Identities=19%  Similarity=0.162  Sum_probs=89.7

Q ss_pred             hHHHHHHHHhccccCCc----------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           63 QTKALKQKLSQLQQSGS----------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~~----------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      +|+++++++++++++..          .++|+++++|+|+||||.|||+||||++|+++.++||+||+|++|+++|++++
T Consensus         1 ~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~   80 (423)
T TIGR00713         1 KSENLFEEAKQVFPGGVNSPVRAFKSVGPTPFFVARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERG   80 (423)
T ss_pred             CcHHHHHHHHhhCCCCCCCcccccccCCCCCeeEEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHhC
Confidence            47889999999988722          14588999999999999999999999999999999999999999999999986


Q ss_pred             ccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          133 TFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       133 ~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+.   .+.++...+++++|.+    ..+..+     ++.+.++|+|+++.+++
T Consensus        81 ~~~---~~~~~~~~~lae~l~~----~~~~~~-----~v~~~~sGseA~e~Alk  122 (423)
T TIGR00713        81 TSY---GAPTEAEILLAKEIIS----RVPSVE-----MVRFVNSGTEATMSAVR  122 (423)
T ss_pred             CcC---CCCCHHHHHHHHHHHH----hCCccc-----EEEEeCCHHHHHHHHHH
Confidence            532   2334444556666555    344432     48899999999999776

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.69  E-value=1.4e-17  Score=157.91  Aligned_cols=119  Identities=19%  Similarity=0.228  Sum_probs=88.3

Q ss_pred             cCCChhHHHHHHHHhccc-cC-CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccc
Q psy237           58 EVPGPQTKALKQKLSQLQ-QS-GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFV  135 (236)
Q Consensus        58 ~~pgp~s~~l~~~~~~~~-~~-~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~  135 (236)
                      .++++++++++++..+++ .. ...+.|+++++|+|+||||+|||+||||+ |.++++|||+||+|++|+++|++++.+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~G~~l~D~dG~~ylD~~-g~~~~~lGh~~p~v~~Ai~~ql~~~~~~  106 (459)
T PRK06082         28 SMNDERTQALLKRDSEVFLHQAMSTPCLDVLASAEGIYIEDVDGKKYMDFH-GNNVHQLGYGHPHVIEKVKEQMAKLPFS  106 (459)
T ss_pred             cCCCcchHHHHHHHHHHhcccccCCCCCceEEeeeeeEEEECCCCEEEEcc-cHhhcccCCCCHHHHHHHHHHHHhCCCc
Confidence            345666777766444433 33 23456889999999999999999999987 4589999999999999999999987764


Q ss_pred             cCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          136 NRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       136 ~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .. .+.++...+++++|.+    ..|...   + ++.|+++|+|++|.+++
T Consensus       107 ~~-~~~~~~~~~lae~L~~----~~p~~~---~-~v~f~~sGseAve~Alk  148 (459)
T PRK06082        107 PR-RFTNETAIECAEKLTE----IAGGEL---N-RVLFAPGGTSAIGMALK  148 (459)
T ss_pred             cC-ccCCHHHHHHHHHHHH----hCCCCC---C-EEEECCCcHHHHHHHHH
Confidence            32 3445555556665555    455321   2 58999999999998876

>PRK07480 putative aminotransferase; Validated

Probab=99.69  E-value=1.1e-17  Score=158.69  Aligned_cols=97  Identities=19%  Similarity=0.147  Sum_probs=79.0

Q ss_pred             cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhcc
Q psy237           82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      .|+++++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+.+.. .+.+++..+++++|.+    ..
T Consensus        32 ~~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~----~~  107 (456)
T PRK07480         32 GSRVITRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYNTFFKTTHPPAIELAAKLAE----VA  107 (456)
T ss_pred             CCceEEeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcccccccCCHHHHHHHHHHHH----hC
Confidence            468999999999999999999999999999999999999999999999998765432 2455555666666655    34


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...   + ++.|.++|+||+|.+++
T Consensus       108 p~~~---~-~v~f~~SGseA~e~Alk  129 (456)
T PRK07480        108 PPGF---N-HVFFTNSGSEANDTVLR  129 (456)
T ss_pred             CCCc---C-EEEEeCCcHHHHHHHHH
Confidence            5321   2 58899999999998876

>PRK06917 hypothetical protein; Provisional

Probab=99.69  E-value=7.6e-18  Score=159.31  Aligned_cols=97  Identities=18%  Similarity=0.180  Sum_probs=78.6

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      ++| ++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|++++.+.....+.+++..+++++|.+    ..
T Consensus        13 ~~p-~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~----~~   87 (447)
T PRK06917         13 PYP-VISHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSD----LS   87 (447)
T ss_pred             CCC-eEEeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCcCccccccCCHHHHHHHHHHHH----hC
Confidence            556 5999999999999999999999999999999999999999999999876654333455555566666655    45


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...   + +++|+++|+||++.+++
T Consensus        88 p~~~---~-~v~f~~sGsEAve~Alk  109 (447)
T PRK06917         88 PGDL---N-WSFFVNSGSEANETAMK  109 (447)
T ss_pred             CCCC---C-EEEEeCChHHHHHHHHH
Confidence            5421   2 57999999999998876

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.69  E-value=1.3e-17  Score=158.63  Aligned_cols=96  Identities=13%  Similarity=0.111  Sum_probs=80.5

Q ss_pred             ceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCc
Q psy237           83 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGS  162 (236)
Q Consensus        83 p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~  162 (236)
                      ++++++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+.+...+.+++..+++++|.+    ..|.
T Consensus        30 ~~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~----~~p~  105 (466)
T PRK07030         30 LIPIRRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILAGFSHEPVIELSERLVK----ITPP  105 (466)
T ss_pred             CceEEeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHH----hCCC
Confidence            368999999999999999999999999999999999999999999999988766555666666667776665    3442


Q ss_pred             eeeeeeeeeeecceEEeccccchh
Q psy237          163 VSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       163 ~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..   + +++|.++|+||+|.+++
T Consensus       106 ~~---~-~v~f~~sGsEAve~AlK  125 (466)
T PRK07030        106 GL---S-RCFYADNGSSAIEVALK  125 (466)
T ss_pred             Cc---C-EEEEeCCcHHHHHHHHH
Confidence            21   2 58999999999999887

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.69  E-value=8.9e-18  Score=158.67  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=82.9

Q ss_pred             HHHHHhccccCCccccceeeecccccEEEeC-CCCEEEeccCCcccccCCCChHHHHH--Hhhcccccccccc--CCCCC
Q psy237           67 LKQKLSQLQQSGSVSLFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPALLK--IFDDPATVKTFVN--RPALG  141 (236)
Q Consensus        67 l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~-dG~~yLD~~~g~~~~~lGh~hP~V~~--Ai~~q~~~~~~~~--~~~~~  141 (236)
                      +.+...++......++++++++|+|+||||+ |||+||||++|+++.+|||+||+|++  |+++|++++.+..  ...+.
T Consensus        11 ~~~~~~~~~~~~~~p~~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~~~~   90 (443)
T PRK08297         11 VHEVLARHILVDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNSDVY   90 (443)
T ss_pred             hhHHHHHHHhhcCCCcceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccCCcC
Confidence            4445555555444566666899999999996 99999999999999999999999999  9999999876422  22344


Q ss_pred             CCCCCChhhhhHhhhhhcc-CceeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQS-GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~a-p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +++..+++++|.+    .. |...   + +++|++||+||+|.+++
T Consensus        91 ~~~~~~la~~l~~----~~~p~~~---~-~v~f~~SGsEAve~AlK  128 (443)
T PRK08297         91 TVEMARFVDTFAR----VLGDPEL---P-HLFFVDGGALAVENALK  128 (443)
T ss_pred             CHHHHHHHHHHHh----hcCCCCC---C-EEEEeCchHHHHHHHHH
Confidence            4444455555444    33 3211   2 68999999999998876

>PRK07481 hypothetical protein; Provisional

Probab=99.68  E-value=1e-17  Score=158.40  Aligned_cols=98  Identities=13%  Similarity=0.064  Sum_probs=80.0

Q ss_pred             cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhcc
Q psy237           82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      .|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|++++.+.... .+.+++..+++++|.+    ..
T Consensus        24 ~p~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~----~~   99 (449)
T PRK07481         24 PPIIIVRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTFDGTTHPRAIELSYELID----MF   99 (449)
T ss_pred             CCceEEeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecccccCCHHHHHHHHHHHH----hc
Confidence            578999999999999999999999999999999999999999999999998765432 3456666667776665    33


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |...+  + +++|.++|+||+|.+++
T Consensus       100 ~~~~~--~-~v~f~~sGsEAve~Alk  122 (449)
T PRK07481        100 APEGM--R-RVFFSSGGSDSVETALK  122 (449)
T ss_pred             CCCCC--C-EEEEcCchHHHHHHHHH
Confidence            21111  2 68999999999998876

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.68  E-value=1.9e-17  Score=155.74  Aligned_cols=113  Identities=21%  Similarity=0.269  Sum_probs=84.5

Q ss_pred             HHHHHHhccccCCccccceeeecccccEEEeC-CCCEEEeccCCcccccCCCChHHHH--HHhhcccccccccc--CCCC
Q psy237           66 ALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPALL--KIFDDPATVKTFVN--RPAL  140 (236)
Q Consensus        66 ~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~-dG~~yLD~~~g~~~~~lGh~hP~V~--~Ai~~q~~~~~~~~--~~~~  140 (236)
                      .+++.+.+|+.....|+++++++|+|+||||. |||+||||++|+++.+|||+||+|+  +|+++|++++.+..  ...+
T Consensus         3 ~~~~~~~~~~~~~~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~~~   82 (431)
T TIGR03251         3 RVHEVLSRHMLTDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNSDV   82 (431)
T ss_pred             hHHHHHHHHhhccCCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccCCC
Confidence            46777788887766667777899999999996 9999999999999999999999999  99999999875422  1123


Q ss_pred             CCCCCCChhhhhHhhhhhcc-CceeeeeeeeeeecceEEeccccchh
Q psy237          141 GVFPSGDWPQLLENVLLKQS-GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       141 ~~~~~~elAE~Lae~Ll~~a-p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+++..+++++    |.... +...   + +++|+++|+||+|.+++
T Consensus        83 ~~~~~~~l~~~----l~~~~~~~~~---~-~v~f~~sGsEAve~Alk  121 (431)
T TIGR03251        83 YTVAMARFVDT----FARVLGDPAL---P-HLFFIEGGALAVENALK  121 (431)
T ss_pred             CCHHHHHHHHH----HHHhcCCCCc---C-EEEEeCCcHHHHHHHHH
Confidence            33333333333    33333 3211   2 68999999999998776

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.68  E-value=1.5e-17  Score=157.92  Aligned_cols=97  Identities=13%  Similarity=0.086  Sum_probs=79.5

Q ss_pred             ccceeeecccc-cEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           81 SLFVDYQKSFG-NYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        81 ~~p~~i~~a~G-~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      .+|+++++|+| +||||+|||+||||++|+|+.++||+||+|++|+++|++++.+.+. .+.++...+++++|.+    .
T Consensus        62 ~~~~~~~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~~-~~~~~~~~~lae~L~~----~  136 (459)
T PRK11522         62 DYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQ-ELLDPLRAMLAKTLAA----L  136 (459)
T ss_pred             CCCeeEEeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCccccc-ccCCHHHHHHHHHHHH----h
Confidence            46789999999 9999999999999999999999999999999999999998876543 3445555556666555    4


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .|+..   + +++|+++|+||+|.+++
T Consensus       137 ~p~~~---~-~v~f~~SGsEAve~Alk  159 (459)
T PRK11522        137 TPGKL---K-YSFFCNSGTESVEAALK  159 (459)
T ss_pred             CCCCC---C-EEEEeCCchHHHHHHHH
Confidence            55422   2 58999999999999877

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.66  E-value=2.6e-17  Score=152.04  Aligned_cols=112  Identities=15%  Similarity=0.127  Sum_probs=86.5

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      ..|+.+++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+... .+.+++..++++++.+    ..
T Consensus         5 ~~~~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~~-~~~~~~~~~la~~l~~----~~   79 (364)
T PRK04013          5 RKRLRLVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAGP-MFEHEEKEEMLEELSK----WV   79 (364)
T ss_pred             CCCccEEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCccC-CcCCHHHHHHHHHHHh----hc
Confidence            457889999999999999999999999999999999999999999999999876653 4555555566666555    23


Q ss_pred             CceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHH
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPA  203 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~  203 (236)
                      + ..     ++.++++|+|+++.+++        |-+..+....+|.....
T Consensus        80 ~-~~-----~v~~~~SGseA~e~Alklar~~~gr~~Ii~~~~syHG~t~~~  124 (364)
T PRK04013         80 N-YE-----YVYMGNSGTEAVEAALKFARLYTGRKEIIAMTNAFHGRTMGA  124 (364)
T ss_pred             C-CC-----EEEEeCchHHHHHHHHHHHHHHhCCCEEEEECCccccCchhh
Confidence            2 22     47889999999999877        33333444566665443

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.66  E-value=2.8e-17  Score=157.66  Aligned_cols=99  Identities=19%  Similarity=0.206  Sum_probs=78.8

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      +.|+++++|+|+||||+|||+||||++|+|+.+|||+||+|++|+++|++++.+.+.. .+.+++..+++++|.+    .
T Consensus        70 ~~p~~i~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~----~  145 (504)
T PLN02760         70 LEPLVIEKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLE----M  145 (504)
T ss_pred             CCCceEEeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhccceecccccCcHHHHHHHHHHHh----h
Confidence            4688999999999999999999999999999999999999999999999998765432 2345555566666555    3


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+..++  . ++.|.++|+||++.+++
T Consensus       146 ~~~~~~--~-~v~f~~SGsEA~e~AlK  169 (504)
T PLN02760        146 FTARKM--G-KVFFTNSGSEANDTQVK  169 (504)
T ss_pred             cCCCCC--C-EEEEeCChHHHHHHHHH
Confidence            222211  1 58899999999998776

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.66  E-value=6.6e-17  Score=151.53  Aligned_cols=116  Identities=14%  Similarity=0.050  Sum_probs=87.9

Q ss_pred             HHHHHHHHhccccC-CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCC
Q psy237           64 TKALKQKLSQLQQS-GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGV  142 (236)
Q Consensus        64 s~~l~~~~~~~~~~-~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~  142 (236)
                      .+++.++..+++++ ...++|+++++|+|+||||+||++||||++|+++.++||+||+|++|+++|++++.+.....+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~~~~~~~~   83 (425)
T PRK08088          4 NKSLMQRRSAAVPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAY   83 (425)
T ss_pred             HHHHHHHHHHhhccccCCCCCceEEeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCccccccCC
Confidence            35567676666554 33556899999999999999999999999999999999999999999999999887654433445


Q ss_pred             CCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          143 FPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       143 ~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ++..++++++.+    ..+...   ..++.+.++|+|++|.+++
T Consensus        84 ~~~~~la~~l~~----~~~~~~---~~~~~f~~sGsea~e~Alk  120 (425)
T PRK08088         84 EPYLELCEKMNQ----KVPGDF---AKKTLLVTTGSEAVENAVK  120 (425)
T ss_pred             HHHHHHHHHHHH----hCCCCC---CCEEEEeCCcHHHHHHHHH
Confidence            444555555554    333211   1157899999999998776

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.65  E-value=3.8e-17  Score=154.43  Aligned_cols=95  Identities=15%  Similarity=0.135  Sum_probs=76.7

Q ss_pred             ceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCc
Q psy237           83 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGS  162 (236)
Q Consensus        83 p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~  162 (236)
                      .+++++++|+||||+|||+||||++|+|+.++||+||+|++|+++|++++.+.+. .+.+++..+++++|.+    ..|+
T Consensus        58 ~~~~~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~~-~~~~~~~~~lAe~L~~----~~p~  132 (442)
T TIGR03372        58 AVEWQAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHSQ-ELLDPLRALLAKTLAA----LTPG  132 (442)
T ss_pred             eeEEEeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCccc-ccCCHHHHHHHHHHHH----hCCC
Confidence            3556788889999999999999999999999999999999999999998876543 3446566666666665    3554


Q ss_pred             eeeeeeeeeeecceEEeccccchh
Q psy237          163 VSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       163 ~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..   + +++|+++|+||+|.+++
T Consensus       133 ~~---~-~v~f~~SGsEA~e~Alk  152 (442)
T TIGR03372       133 KL---K-YSFFCNSGTESVEAALK  152 (442)
T ss_pred             Cc---C-EEEEeCCchHHHHHHHH
Confidence            21   2 57899999999998876

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.65  E-value=1e-16  Score=150.41  Aligned_cols=131  Identities=18%  Similarity=0.163  Sum_probs=96.9

Q ss_pred             hhHHHHHHHHhccccCCc----------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           62 PQTKALKQKLSQLQQSGS----------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~~----------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ++|++|.|++.+++++..          .++|+++++|+|+||||.||++||||.+|+++.+|||+||+|++|+++|+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~   81 (426)
T PRK00062          2 SKSEELFERAKKLIPGGVNSPVRAFKSVGGTPRFIERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEK   81 (426)
T ss_pred             chhHHHHHHHHHhCCCCcCCcccccCCCCCCCeEEEeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHh
Confidence            578999999999988732          1346889999999999999999999999999999999999999999999988


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhccccccccCCCCHH
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPLGYNHPA  203 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~lGh~~p~  203 (236)
                      ...   ..+.++...+++++|.+    ..+...     ++.+.++|+||++.+++        +-+-.+....+|+....
T Consensus        82 ~~~---~~~~~~~~~~la~~L~~----~~~~~~-----~v~~~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~  149 (426)
T PRK00062         82 GLS---FGAPTELEVELAELVIE----LVPSIE-----MVRMVNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSL  149 (426)
T ss_pred             CCc---CCCCCHHHHHHHHHHHH----hCCCCC-----EEEEecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhh
Confidence            432   12333333444444444    344332     57889999999998776        22233455567765444


Q ss_pred             H
Q psy237          204 L  204 (236)
Q Consensus       204 i  204 (236)
                      +
T Consensus       150 ~  150 (426)
T PRK00062        150 L  150 (426)
T ss_pred             h
Confidence            3

>KOG1402|consensus

Probab=99.64  E-value=9.2e-17  Score=144.35  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=93.1

Q ss_pred             ChhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCC
Q psy237           61 GPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPAL  140 (236)
Q Consensus        61 gp~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~  140 (236)
                      +..|+.++++..++-...+.|+|+++++|+|+++||.+|++||||+++++++|.|||||.|++|+++|+++++..++..+
T Consensus        20 ~~aS~~~~~~E~k~~ahnyhpLpvvf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlssrafY   99 (427)
T KOG1402|consen   20 TTASQQIMERENKYGAHNYHPLPVVFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSSRAFY   99 (427)
T ss_pred             ccchhhhhchhhhcccccCCcCceEEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhhHHHh
Confidence            34467788888888888899999999999999999999999999999999999999999999999999999987776443


Q ss_pred             CCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          141 GVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       141 ~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                       +....++++.+.+    .++. +     ++.-.++|.|++|.+.+
T Consensus       100 -nd~~~~f~~~vt~----lf~~-~-----kvlpmnTGaEa~Eta~K  134 (427)
T KOG1402|consen  100 -NDVLGEFAEYVTK----LFGY-D-----KVLPMNTGAEAVETACK  134 (427)
T ss_pred             -hhhHHHHHHHHHH----hcCc-c-----eeeecccchhHHHHHHH
Confidence             4444455554444    4443 3     24447889999998765

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.64  E-value=9.5e-17  Score=149.53  Aligned_cols=97  Identities=19%  Similarity=0.137  Sum_probs=78.0

Q ss_pred             ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhh
Q psy237           79 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK  158 (236)
Q Consensus        79 ~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~  158 (236)
                      ..++|+++++|+|+||||.|||+||||++|+++.+|||+||+|++|+++|++++.+++. .+.+++..+++++|.+    
T Consensus        18 ~~~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~-~~~~~~~~~la~~l~~----   92 (406)
T PRK12381         18 YAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGN-GYTNEPVLRLAKKLID----   92 (406)
T ss_pred             cCCCCceEEEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccC-ccCCHHHHHHHHHHHh----
Confidence            34678899999999999999999999999999999999999999999999998765543 3334444555555555    


Q ss_pred             ccCceeeeeeeeeeecceEEeccccchh
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+ .    + ++.+.++|+|+++.+++
T Consensus        93 ~~~-~----~-~v~~~~sGseA~e~Alk  114 (406)
T PRK12381         93 ATF-A----D-RVFFCNSGAEANEAALK  114 (406)
T ss_pred             hCC-C----C-eEEEcCCcHHHHHHHHH
Confidence            333 2    2 58999999999998776

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.63  E-value=1.2e-16  Score=148.46  Aligned_cols=97  Identities=16%  Similarity=0.123  Sum_probs=77.8

Q ss_pred             ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhh
Q psy237           79 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK  158 (236)
Q Consensus        79 ~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~  158 (236)
                      ..++|+++++|+|+||||+|||+||||.+|+++.+|||+||+|++|+++|++++.+... .+.+++..+++++|.+    
T Consensus        14 ~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~L~~----   88 (397)
T TIGR03246        14 YAPAPFIPVRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGN-GYTNEPVLRLAKKLVD----   88 (397)
T ss_pred             cCCCCceEEEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccC-ccCCHHHHHHHHHHHh----
Confidence            34678999999999999999999999999999999999999999999999998655432 3344444555555555    


Q ss_pred             ccCceeeeeeeeeeecceEEeccccchh
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+. +     ++.+.+||+|+++.+++
T Consensus        89 ~~~~-~-----~~~f~~SGseA~e~Alk  110 (397)
T TIGR03246        89 ATFA-D-----KVFFCNSGAEANEAALK  110 (397)
T ss_pred             hCCC-C-----EEEEeCCcHHHHHHHHH
Confidence            3332 2     48899999999999876

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN00144 acetylornithine transaminase

Probab=99.63  E-value=8.7e-17  Score=149.04  Aligned_cols=90  Identities=23%  Similarity=0.279  Sum_probs=74.0

Q ss_pred             eecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCceee
Q psy237           86 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSL  165 (236)
Q Consensus        86 i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~  165 (236)
                      +++|+|+||||+|||+||||++|+++.++||+||+|++|+++|++++.+.+. .+.+++..+++++|.+    ..+ .  
T Consensus         1 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~~~~~la~~l~~----~~~-~--   72 (382)
T PLN00144          1 FVSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVSN-VYHTIPQVELAKRLVA----SSF-A--   72 (382)
T ss_pred             CeeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCccc-cccCHHHHHHHHHHHh----cCC-C--
Confidence            5789999999999999999999999999999999999999999999876653 2345555566666554    232 2  


Q ss_pred             eeeeeeeecceEEeccccchh
Q psy237          166 FVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       166 ~i~~~~~~G~sgsDA~g~a~l  186 (236)
                        + ++.+.++|+|++|.+++
T Consensus        73 --~-~v~f~~sGseA~e~Alk   90 (382)
T PLN00144         73 --D-RVFFCNSGTEANEAAIK   90 (382)
T ss_pred             --C-eEEEeCCcHHHHHHHHH
Confidence              2 58999999999998877

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.62  E-value=4.5e-17  Score=148.80  Aligned_cols=94  Identities=22%  Similarity=0.255  Sum_probs=77.3

Q ss_pred             eeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCcee
Q psy237           85 DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVS  164 (236)
Q Consensus        85 ~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~  164 (236)
                      +|+||+|+||||.|||+||||++|+++.+|||+||+|++|+++|++++.+.+...+.+++..+++++|.+    ..|...
T Consensus         1 ~i~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~----~~p~~~   76 (339)
T PF00202_consen    1 FIERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFSGFTHPEAAELAEKLAE----LFPGGL   76 (339)
T ss_dssp             EEEEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHH----HSSTTE
T ss_pred             CeEEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhcccccccceeccchhhhhhhhhh----cccccc
Confidence            5899999999999999999999999999999999999999999999988876556666666666666665    345421


Q ss_pred             eeeeeeeeecceEEeccccchh
Q psy237          165 LFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       165 ~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                          .++.+.++|+|++|.+++
T Consensus        77 ----~~v~f~~sGseAve~Alk   94 (339)
T PF00202_consen   77 ----DRVFFANSGSEAVEAALK   94 (339)
T ss_dssp             ----EEEEEESSHHHHHHHHHH
T ss_pred             ----ceeeeccCchHHHHHHHH
Confidence                268999999999999876

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.61  E-value=2.8e-16  Score=147.79  Aligned_cols=96  Identities=17%  Similarity=0.063  Sum_probs=77.5

Q ss_pred             ceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCc
Q psy237           83 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGS  162 (236)
Q Consensus        83 p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~  162 (236)
                      +..+++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.....+.++...+++++|.+    ..|.
T Consensus        28 ~~~~~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~----~~~~  103 (427)
T TIGR00508        28 VYPVESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVK----MTPN  103 (427)
T ss_pred             CceEEeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHh----hCCC
Confidence            356899999999999999999999999999999999999999999999877655434455555566666655    3443


Q ss_pred             eeeeeeeeeeecceEEeccccchh
Q psy237          163 VSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       163 ~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..   + ++.+.++|+|+++.+++
T Consensus       104 ~~---~-~v~f~~sGseA~e~Alk  123 (427)
T TIGR00508       104 AL---D-CVFLADSGSVAVEVALK  123 (427)
T ss_pred             CC---C-EEEEeCCcHHHHHHHHH
Confidence            21   2 68999999999998766

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.60  E-value=6.4e-16  Score=142.95  Aligned_cols=112  Identities=23%  Similarity=0.186  Sum_probs=83.3

Q ss_pred             HHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCC
Q psy237           64 TKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF  143 (236)
Q Consensus        64 s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~  143 (236)
                      +.++++....+......+.|+++++++|+||||+||++||||.+|++++++||+||+|++|+++|++++.+.++ .+.++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~-~~~~~   83 (401)
T PRK00854          5 SEDLIATEQRLGAHNYKPLDVVLTRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTSR-AFRND   83 (401)
T ss_pred             CHHHHHHHhhhhhcccCCCCceEEeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccc-ccCCH
Confidence            46676655544333334678899999999999999999999999999999999999999999999999876543 23333


Q ss_pred             CCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          144 PSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       144 ~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ...+++++    |....+. +     +..+.++|++|++.+++
T Consensus        84 ~~~~l~~~----l~~~~~~-~-----~~~~~~SGs~A~e~al~  116 (401)
T PRK00854         84 QLAPLYEE----LAALTGS-H-----KVLPMNSGAEAVETAIK  116 (401)
T ss_pred             HHHHHHHH----HHhhCCC-C-----EEEEeCCcHHHHHHHHH
Confidence            33334444    4333432 2     47888999999998765

>PRK06148 hypothetical protein; Provisional

Probab=99.59  E-value=7.2e-16  Score=158.37  Aligned_cols=110  Identities=13%  Similarity=0.115  Sum_probs=84.2

Q ss_pred             HHHHHHHhccccCCc---cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCC
Q psy237           65 KALKQKLSQLQQSGS---VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        65 ~~l~~~~~~~~~~~~---~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      .++++++..++.+..   .++|+++++|+|+||||+|||+||||++|+  .+|||+||+|++|+++|++++....  .+.
T Consensus       586 ~~~~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~~~l~~~~--~~~  661 (1013)
T PRK06148        586 AEILRERKEHLLPNLSISYSDPIKFVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQAARLNTNT--RYL  661 (1013)
T ss_pred             HHHHHHHHHhcCcccccccCCCceEEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHHhhcCCcC--CcC
Confidence            344556566665532   367899999999999999999999999985  7899999999999999999873322  345


Q ss_pred             CCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +++..+++++|.+    ..|...   + +++|++||+||++.+++
T Consensus       662 ~~~~~~lAe~L~~----~~p~~~---~-~v~f~nSGsEA~e~Alk  698 (1013)
T PRK06148        662 HDAIVAYAERLTA----TLPDGL---T-VAFFVNSGSEANSLALR  698 (1013)
T ss_pred             CHHHHHHHHHHHH----hCCCCc---C-EEEEeCCcHHHHHHHHH
Confidence            6666666766665    345321   2 58999999999998876

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.58  E-value=8.7e-16  Score=141.65  Aligned_cols=96  Identities=21%  Similarity=0.231  Sum_probs=76.3

Q ss_pred             cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           80 VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        80 ~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      .+.|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+... .+.++...+++++|.+    .
T Consensus        11 ~~~~~~~~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~la~~l~~----~   85 (389)
T PRK01278         11 NRADLAFERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSN-LYRIPEQERLAERLVE----N   85 (389)
T ss_pred             CCCCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCcccc-ccCChHHHHHHHHHHh----h
Confidence            3568899999999999999999999999999999999999999999999998766543 2334444555555554    3


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+ .+     ++.+.++|+|+++.+++
T Consensus        86 ~~-~~-----~v~~~~sGseA~~~al~  106 (389)
T PRK01278         86 SF-AD-----KVFFTNSGAEAVECAIK  106 (389)
T ss_pred             CC-CC-----EEEEcCCcHHHHHHHHH
Confidence            33 12     47889999999998754

>PRK06149 hypothetical protein; Provisional

Probab=99.57  E-value=1.4e-15  Score=155.70  Aligned_cols=114  Identities=15%  Similarity=0.117  Sum_probs=88.4

Q ss_pred             ChhHHHHHHHHhccccCC---ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccC
Q psy237           61 GPQTKALKQKLSQLQQSG---SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR  137 (236)
Q Consensus        61 gp~s~~l~~~~~~~~~~~---~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~  137 (236)
                      .+++.++++++++++.+.   ..+.|+++++|+|+||||.|||+||||++|+  .++||+||+|++|+++|+.++.+.+ 
T Consensus       543 ~~~~~~l~~~~~~~~~~~~~~~~~~p~~i~~g~G~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~~~l~~~~-  619 (972)
T PRK06149        543 PPDAAALLARRDASFARVQKHYYADPPQIERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQWSLLNTNS-  619 (972)
T ss_pred             CCCHHHHHHHHHHhhccchhhcccCCCeEEEeeeeEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHHHhccccc-
Confidence            467788999988887662   2345789999999999999999999999986  4799999999999999999876433 


Q ss_pred             CCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          138 PALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       138 ~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                       .+.++...+++++|.+    ..|...   + +++|.+||+||++.+++
T Consensus       620 -~~~~~~~~elae~L~~----~~p~~~---~-~v~f~~SGsEA~e~Alk  659 (972)
T PRK06149        620 -RFHYAAVAEFSERLAA----LAPDGL---D-TVFLVNSGSEANDLAIR  659 (972)
T ss_pred             -cccCHHHHHHHHHHHH----hCCCCc---C-EEEEeCCchHHHHHHHH
Confidence             2334444555555554    455321   2 58999999999999887

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.57  E-value=1.1e-15  Score=142.40  Aligned_cols=95  Identities=19%  Similarity=0.200  Sum_probs=74.8

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      ..|+++++|+|+||||+|||+||||++|+++.+|||+||+|++|+++|++++.+.+. .+.+++..+++++|.+    ..
T Consensus        17 ~~~~~~~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~~~-~~~~~~~~~la~~l~~----~~   91 (395)
T PRK03715         17 RPDIVFTHGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINPSP-AFYNEPMAKLAGLLTQ----HS   91 (395)
T ss_pred             CCCceEEeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccccc-cccCHHHHHHHHHHhh----cc
Confidence            357889999999999999999999999999999999999999999999998765543 2334444444444443    22


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      + ..     ++.+.++|+|+++.+++
T Consensus        92 ~-~~-----~v~f~~SGseA~e~Aik  111 (395)
T PRK03715         92 C-FD-----KVFFANSGAEANEGAIK  111 (395)
T ss_pred             C-CC-----EEEEeCCcHHHHHHHHH
Confidence            2 22     48899999999998775

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.56  E-value=1.3e-15  Score=141.52  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=76.3

Q ss_pred             ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhh
Q psy237           79 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK  158 (236)
Q Consensus        79 ~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~  158 (236)
                      ..++|+++++|+|+||||.||++||||++|+++.+|||+||+|++|+.+|+++..+... .+.+++..+++++|.+    
T Consensus        19 ~~~~~~~~~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~----   93 (403)
T PRK05093         19 YAPAEFIPVRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISN-VFTNEPALRLAKKLID----   93 (403)
T ss_pred             cCCCCeeEEEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccC-ccCCHHHHHHHHHHHh----
Confidence            44788999999999999999999999999999999999999999999999987654432 2334444445555544    


Q ss_pred             ccCceeeeeeeeeeecceEEeccccchh
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+ .+     ++.+.++|+|+++.+++
T Consensus        94 ~~~-~~-----~~~~~~sGseA~e~a~k  115 (403)
T PRK05093         94 ATF-AE-----RVFFANSGAEANEAAFK  115 (403)
T ss_pred             hCC-CC-----EEEEeCchHHHHHHHHH
Confidence            332 22     57889999999999876

>KOG1401|consensus

Probab=99.56  E-value=1.7e-15  Score=139.14  Aligned_cols=122  Identities=16%  Similarity=0.133  Sum_probs=95.0

Q ss_pred             CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhh
Q psy237           78 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL  157 (236)
Q Consensus        78 ~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll  157 (236)
                      .+..+|+++.+++|+.+||.||++|+||+++||+..+||+||+|.+|+.+|+.++.|+....+..+ ..++++.+.+   
T Consensus        34 t~a~~pv~~~~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t~e-av~l~~~l~~---  109 (433)
T KOG1401|consen   34 TYARYPVVIESGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFTLE-AVELEEVLSA---  109 (433)
T ss_pred             ecCCCceeeecceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCccccHH-HHHHHHHHHh---
Confidence            445678999999999999999999999999999999999999999999999999999876655433 4455555444   


Q ss_pred             hccCceeeeeeeeeeecceEEeccccchh--------hh------hccccccccCCCCHHHHHh
Q psy237          158 KQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DV------YTQISSVPLGYNHPALLKI  207 (236)
Q Consensus       158 ~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~------~sg~~~~~lGh~~p~i~~A  207 (236)
                       ......   .-+++|+++|+||+|.+++        +-      +..+-...||+..-.+..+
T Consensus       110 -~~~~~~---~~rvff~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~  169 (433)
T KOG1401|consen  110 -VLGKGS---AERVFFCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVT  169 (433)
T ss_pred             -cccCCC---ccEEEEecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhh
Confidence             222221   1268999999999999887        21      3335667788887777655

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.54  E-value=3.1e-15  Score=138.78  Aligned_cols=112  Identities=21%  Similarity=0.211  Sum_probs=85.7

Q ss_pred             HHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCC
Q psy237           64 TKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF  143 (236)
Q Consensus        64 s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~  143 (236)
                      |++++++..++......+.|.++++++|+||||.||++||||.++++++++||+||+|++|+++|++++.+.+. .+.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~-~~~~~   79 (401)
T TIGR01885         1 SEEAIERENKYGAHNYHPLPVVFSKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLTLSSR-AFYND   79 (401)
T ss_pred             ChhHHHHHHHhhhcccCCCCceEEeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhcccccc-ccCCH
Confidence            35667777766555444678889999999999999999999999999999999999999999999998765543 23344


Q ss_pred             CCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          144 PSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       144 ~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ...+++++|.+    ..+ .+     ++.+.++|+++++.+++
T Consensus        80 ~~~~l~~~l~~----~~~-~~-----~~~~~~SGs~A~e~ai~  112 (401)
T TIGR01885        80 VFGEFAEYVTK----LFG-YD-----KVLPMNTGAEAVETAIK  112 (401)
T ss_pred             HHHHHHHHHHh----hcC-CC-----EEEEeCccHHHHHHHHH
Confidence            44455555554    333 22     47888999999998766

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.51  E-value=6.1e-15  Score=136.12  Aligned_cols=100  Identities=20%  Similarity=0.173  Sum_probs=76.8

Q ss_pred             cCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhh
Q psy237           76 QSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENV  155 (236)
Q Consensus        76 ~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~  155 (236)
                      .....++|+++++++|+||||.|||+||||++|+++.++||+||+|++|+++|++++.+.++. +.+    +..+.+++.
T Consensus         7 ~~~~~~~~~~~~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~~~-~~~----~~~~~~~~~   81 (400)
T PTZ00125          7 AHNYHPLPVVLKRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTSRA-FYN----DVLGLAEKY   81 (400)
T ss_pred             ccccCCCCccEEeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccccc-ccC----HHHHHHHHH
Confidence            333456788999999999999999999999999999999999999999999999887765432 222    234444443


Q ss_pred             hhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          156 LLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       156 Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.. .++.+     ++.+.+||+++++.++.
T Consensus        82 l~~-~~~~~-----~~~~~~SGs~A~e~al~  106 (400)
T PTZ00125         82 ITD-LFGYD-----KVLPMNSGAEAGETALK  106 (400)
T ss_pred             HHh-CCCCC-----EEEEeCCcHHHHHHHHH
Confidence            332 33332     47788999999998776

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.47  E-value=4.6e-14  Score=129.42  Aligned_cols=95  Identities=19%  Similarity=0.230  Sum_probs=74.5

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      ++|+++++|+|+|+||+|||+||||.+|+++.+|||+||+|++|+++|+++..+.+. .+    ..++.+.+++.+....
T Consensus        10 ~~~~~~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~----~~~~~~~la~~l~~~~   84 (377)
T PRK02936         10 RFPIDIVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHVSN-LF----TNSLQEEVASLLAENS   84 (377)
T ss_pred             CCCceEEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccccc-cc----CCHHHHHHHHHHHhcC
Confidence            467889999999999999999999999999999999999999999999988654332 12    2344555555443333


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      + .+     ++.+.++|+++++.+++
T Consensus        85 ~-~~-----~~~~~~sG~~a~~~A~~  104 (377)
T PRK02936         85 A-GD-----LVFFCNSGAEANEAALK  104 (377)
T ss_pred             C-CC-----EEEEeCCcHHHHHHHHH
Confidence            3 12     47888999999998876

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.45  E-value=4.7e-14  Score=129.72  Aligned_cols=112  Identities=20%  Similarity=0.219  Sum_probs=83.5

Q ss_pred             HHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCC
Q psy237           64 TKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF  143 (236)
Q Consensus        64 s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~  143 (236)
                      |.++..+..+++.....++|+++++|+|+||||.|||+||||.+|+++.+|||+||+|.+|+++|+++..+... .+.+ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~-   80 (396)
T PRK02627          3 SEAIIELEKKYLMNTYGRLPIAFVRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHTSN-LYYI-   80 (396)
T ss_pred             HHHHHHHHHHhhcccccCCCceEEeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcccccc-ccCC-
Confidence            45666666666655455778999999999999999999999999999999999999999999999987654321 1222 


Q ss_pred             CCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          144 PSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       144 ~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                         ...+.+++.+.... +.+     ...++++|+++++.++.
T Consensus        81 ---~~~~~la~~l~~~~-~~~-----~v~~~~gg~eA~~~al~  114 (396)
T PRK02627         81 ---EPQEELAEKLVELS-GMD-----KVFFCNSGAEANEAAIK  114 (396)
T ss_pred             ---HHHHHHHHHHHhhc-CCC-----EEEECCCcHHHHHHHHH
Confidence               33444444343333 222     47888999999998766

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.44  E-value=5.9e-14  Score=141.08  Aligned_cols=118  Identities=11%  Similarity=-0.015  Sum_probs=92.8

Q ss_pred             hhHHHHHHHHhccccCCc-------cccceeeeccccc----EEEeCCCC----EEEeccCCcccccCC-CChHHHHHHh
Q psy237           62 PQTKALKQKLSQLQQSGS-------VSLFVDYQKSFGN----YLVDVDGN----HILDVYTQISSVPLG-YNHPALLKIF  125 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~~-------~~~p~~i~~a~G~----~l~D~dG~----~yLD~~~g~~~~~lG-h~hP~V~~Ai  125 (236)
                      ++++++.+++++++.-.+       ..-+.+|++++|.    |++|.||+    +|||+.+|+|+.++| |+||+|++|+
T Consensus       312 ~~~~~~~~~a~~~iw~Pftq~~~~~~~~~~vi~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai  391 (817)
T PLN02974        312 QRLQSMPKEAGEVLWWPFTQHALVPRDSVTVIDSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAV  391 (817)
T ss_pred             HHHHHHHHHHhhhccCCcccccccCCCCceEEEeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHH
Confidence            356677777777753211       1135789999998    99999998    999999999999999 6899999999


Q ss_pred             hccccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          126 DDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       126 ~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ++|++++.|+....+.+++..+++++|.+ +   .+...   ..+++|+++|+||+|.+++
T Consensus       392 ~~Qa~rl~hv~~~~~~hepa~~LAe~L~~-~---~~~~~---l~rVffs~sGSeAvE~AlK  445 (817)
T PLN02974        392 AYAAGRYGHVMFPENVHEPALRAAELLLG-G---PGKGW---ASRVFFSDNGSTAIEVALK  445 (817)
T ss_pred             HHHHhhCCccccCccCCHHHHHHHHHHHh-c---cCCCC---CCEEEECCchHHHHHHHHH
Confidence            99999999987656677777777777766 2   33111   1268999999999998776

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.39  E-value=1.9e-13  Score=126.33  Aligned_cols=114  Identities=18%  Similarity=0.185  Sum_probs=82.3

Q ss_pred             HHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCC
Q psy237           65 KALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFP  144 (236)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~  144 (236)
                      ++.++...+++.......|+++++++|+|+||.|||+||||.+|+++.+|||+||+|++|+++|+++..+... .+.+..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~-~~~~~~   86 (398)
T PRK03244          8 AELLQRWQAVMMNNYGTPPLALVRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLGHVSN-LFATEP   86 (398)
T ss_pred             HHHHHHHHHHhhhhccCCCceEEEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhccCccC-ccCCHH
Confidence            3344444445444334567899999999999999999999999999999999999999999999998654322 233444


Q ss_pred             CCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          145 SGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       145 ~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..++++++.+    ..+...   ..+..++++|+++++.++.
T Consensus        87 ~~~la~~l~~----~~~~~~---~~~v~~~~sgsea~~~al~  121 (398)
T PRK03244         87 QIALAERLVE----LLGAPE---GGRVFFCNSGAEANEAAFK  121 (398)
T ss_pred             HHHHHHHHHH----hCCCCC---CCEEEEeCchHHHHHHHHH
Confidence            4455555554    333211   0147888999999998765

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.36  E-value=2.8e-13  Score=125.00  Aligned_cols=99  Identities=23%  Similarity=0.241  Sum_probs=74.1

Q ss_pred             cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           80 VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        80 ~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      .++|+++++++|++|||+||++||||.+|++++++||+||+|++|+.+|+.+..+.......+    +....+++.+...
T Consensus        16 ~~~~~~~~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~   91 (413)
T cd00610          16 RPYPLVIVRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSLGFFYN----EPAVELAELLLAL   91 (413)
T ss_pred             CCCCceEEeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccCcccCC----HHHHHHHHHHHHh
Confidence            357899999999999999999999999999999999999999999999997755433211112    3344444444444


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+...   + ++.+.++|+++++.++.
T Consensus        92 ~~~~~---~-~v~~~~sgsea~~~al~  114 (413)
T cd00610          92 TPEGL---D-KVFFVNSGTEAVEAALK  114 (413)
T ss_pred             CCCCC---C-EEEEcCcHHHHHHHHHH
Confidence            54211   2 47888999999997665

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>KOG1403|consensus

Probab=99.35  E-value=2.5e-13  Score=121.28  Aligned_cols=109  Identities=17%  Similarity=0.119  Sum_probs=82.4

Q ss_pred             HHHHHHHhccccC----CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCC
Q psy237           65 KALKQKLSQLQQS----GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPAL  140 (236)
Q Consensus        65 ~~l~~~~~~~~~~----~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~  140 (236)
                      .+.++++++++..    .+..-|+.|+||+|.|++|++|++||||++.++  ..|||||+|++|+..|+..+.--++  |
T Consensus         8 ~etlklRk~hIG~~Cq~Fy~sDP~kivRaq~QYmfDE~g~~yLDCInNVa--Hvghchp~VV~A~~kQmat~~tN~R--F   83 (452)
T KOG1403|consen    8 TETLKLRKQHIGQACQLFYRSDPLKIVRAQGQYMFDEEGTRYLDCINNVA--HVGHCHPEVVRAGAKQMATISTNNR--F   83 (452)
T ss_pred             HHHHhHHHhccCcceeEEecCCchhhehhccceeeccCcccHHHHhhhhh--hcccCCHHHHHHHHHHHhHhcccch--h
Confidence            3467777888776    345568999999999999999999999999864  6899999999999999987653221  2


Q ss_pred             CCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          141 GVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       141 ~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+   .++.+-... |....|...     ..+|.+||+||++-++.
T Consensus        84 lh---d~lv~cA~~-l~stlPeLs-----vc~F~NSGSEANDLALR  120 (452)
T KOG1403|consen   84 LH---DELVQCART-LTSTLPELS-----VCFFVNSGSEANDLALR  120 (452)
T ss_pred             hH---HHHHHHHHH-HhhcCCCce-----EEEEecCCchhhHHHHH
Confidence            22   333333333 555667643     58999999999998775

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.30  E-value=2e-12  Score=118.92  Aligned_cols=93  Identities=24%  Similarity=0.361  Sum_probs=69.8

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      +.|+++++|+|+||||+||++||||.+|++++++|| ||+|++|+.+|++++.+..     +....+..+.+++.+..  
T Consensus        10 ~~~~~~~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~-----~~~~~~~~~~la~~l~~--   81 (375)
T PRK04260         10 RAAIEFVKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSP-----NLYLNSLQEEVAQKLIG--   81 (375)
T ss_pred             CCCceEEEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHHHHhcCccc-----CccCCHHHHHHHHHHhc--
Confidence            357889999999999999999999999999999999 9999999999998764322     12233445555553321  


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      . .    ..+..+.++|+|+++.++.
T Consensus        82 ~-~----~~~~~~~~SGseA~~~Al~  102 (375)
T PRK04260         82 D-K----DYLAFFCNSGAEANEAAIK  102 (375)
T ss_pred             C-c----CCEEEEcCccHHHHHHHHH
Confidence            1 1    1135788999999996544

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.19  E-value=9.2e-12  Score=115.36  Aligned_cols=69  Identities=25%  Similarity=0.356  Sum_probs=58.6

Q ss_pred             hhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          148 WPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       148 lAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      ..+...+++++.+.+.++  .+++++|++.||.+|++||||++|++++++||+||+|++|+++  ++++|+|.
T Consensus         9 ~~~~~~~~~~~~Y~~~~~--~~~~G~G~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn   79 (404)
T COG4992           9 TIELFMKYLMPTYGRLPV--VIVRGEGAYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSN   79 (404)
T ss_pred             HHHHHHHhhhcccCcCce--eEEeccccEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhccc
Confidence            344555667777877775  3459999999999999999999999999999999999999999  66888873

>PRK07505 hypothetical protein; Provisional

Probab=99.17  E-value=2.1e-11  Score=113.19  Aligned_cols=111  Identities=14%  Similarity=0.027  Sum_probs=72.0

Q ss_pred             HHHHHHHhccccC--CccccceeeecccccEEEeCCCCEEEeccCCcccccCC-CChHHHHHHhhccccccccccCCCCC
Q psy237           65 KALKQKLSQLQQS--GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLG-YNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        65 ~~l~~~~~~~~~~--~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lG-h~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      +..+.|.++.+..  ...+..+.+++|+|+++||.||++||||.+.   ..+| |+||+|++|+++|+++..+.+.....
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~ld~~s~---~~lgl~~~p~v~~A~~~~l~~~g~~~~~~~~   85 (402)
T PRK07505          9 KKRINRAEKFWDAAYDEGLNGLTVGEREGILITLADGHTFVNFVSC---SYLGLDTHPAIIEGAVDALKRTGSLHLSSSR   85 (402)
T ss_pred             HHHHHhhHHHHHHHHhcccccceeeccCCccEEecCCceEEEeecC---CccCCCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence            3345555555543  2345567899999999999999999999883   5788 99999999999999875311111110


Q ss_pred             CCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccch
Q psy237          142 VFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHI  185 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~  185 (236)
                      .....+..+.+++.|....+. .      ..+.++|+++++.++
T Consensus        86 ~~~~~~~~~~l~~~la~~~~~-~------~~~~~sG~~a~~~ai  122 (402)
T PRK07505         86 TRVRSQILKDLEEALSELFGA-S------VLTFTSCSAAHLGIL  122 (402)
T ss_pred             hhhhhHHHHHHHHHHHHHhCC-C------EEEECChHHHHHHHH
Confidence            111233445555545444432 2      455567888887655

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.12  E-value=7e-11  Score=107.95  Aligned_cols=96  Identities=23%  Similarity=0.309  Sum_probs=70.8

Q ss_pred             cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           80 VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        80 ~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      .++|+++++++|++|||.||++||||.+|+++.+|||+||.|.+++.+++++..+..+ .+.++...++++++.+    .
T Consensus         7 ~~~~~~~~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~la~----~   81 (379)
T TIGR00707         7 GRLPVKIVRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLVHVSN-LYYTEPQEELAEKLVE----H   81 (379)
T ss_pred             CCCCccEEEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHh----h
Confidence            3678999999999999999999999999999999999999999999999987644322 1223333334444443    3


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ++ .+     ....+++|+++...++.
T Consensus        82 ~g-~~-----~~~~~~sg~~a~~~a~~  102 (379)
T TIGR00707        82 SG-AD-----RVFFCNSGAEANEAALK  102 (379)
T ss_pred             CC-CC-----EEEEeCCcHHHHHHHHH
Confidence            33 22     36777888887776543

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=98.95  E-value=3.4e-10  Score=107.00  Aligned_cols=51  Identities=31%  Similarity=0.490  Sum_probs=46.4

Q ss_pred             eeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          168 DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       168 ~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      .+++++|+++||++|++||||++|+++.++||+||+|++|+++  +++.|+..
T Consensus        41 ~~~ra~G~~l~DvdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~~~   93 (447)
T COG0160          41 VIVRAEGAYLYDVDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHTHT   93 (447)
T ss_pred             eEEecccCEEEeCCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcccC
Confidence            3469999999999999999999999999999999999999999  55777764

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=98.63  E-value=1.7e-08  Score=95.21  Aligned_cols=48  Identities=17%  Similarity=0.275  Sum_probs=43.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|+++||++|++||||++|++++++||+||+|++|+++  +++.|+.
T Consensus        27 ~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~   76 (425)
T PRK07495         27 DRAENAEIWDKEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHTC   76 (425)
T ss_pred             EeeeecEEEeCCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCcc
Confidence            58999999999999999999999999999999999999999  4455554

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=98.62  E-value=2.3e-08  Score=93.79  Aligned_cols=42  Identities=29%  Similarity=0.455  Sum_probs=40.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|++.||.+|++||||.+|++++++||+||+|++|+++|
T Consensus        22 ~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q   63 (412)
T TIGR02407        22 EKAKGSTLWDEDGKEYIDFFAGAGALNYGHNNPKLKQALIDY   63 (412)
T ss_pred             EecccCEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999984

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>KOG1404|consensus

Probab=98.61  E-value=1.8e-08  Score=92.87  Aligned_cols=49  Identities=27%  Similarity=0.431  Sum_probs=45.3

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +.+++|++.+|.+|++|||+++|++++++|||||+|++|+.+  +++.|.+
T Consensus        36 Iv~~~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t   86 (442)
T KOG1404|consen   36 IVRGEGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTT   86 (442)
T ss_pred             EEecceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEee
Confidence            468999999999999999999999999999999999999999  4577776

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=98.61  E-value=2e-08  Score=95.24  Aligned_cols=49  Identities=22%  Similarity=0.434  Sum_probs=44.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      +++.|+++||.+|++||||++|++++++||+||+|++|+.+  +++.|++.
T Consensus        29 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~~~   79 (445)
T PRK08593         29 DHGYGATLTDVDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHYTP   79 (445)
T ss_pred             EeeeeCEEEeCCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCccc
Confidence            58999999999999999999999999999999999999998  44556543

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=98.60  E-value=3.3e-08  Score=93.27  Aligned_cols=62  Identities=35%  Similarity=0.614  Sum_probs=50.8

Q ss_pred             hhhhhHhhhhhccCceeeeeeeeeeecceEEec-cccchhhhhccccccccCCCCHHHH--HhhhcC
Q psy237          148 WPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPALL--KIFDDP  211 (236)
Q Consensus       148 lAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA-~g~a~lD~~sg~~~~~lGh~~p~i~--~A~~~~  211 (236)
                      +.+.|.++..  ..++++++.++++.|+++||. +|++||||++|++++++||+||+|+  +|+++|
T Consensus         4 ~~~~~~~~~~--~~~~p~~~~~~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q   68 (431)
T TIGR03251         4 VHEVLSRHML--TDGFDLVLDLDRSRGSVLVDARDGRRYLDMFSFFASMALGMNHPALVDDLAFRAR   68 (431)
T ss_pred             HHHHHHHHhh--ccCCceeeEEEeccCCEEEECCCCCChhhcccChhhcCCCCCChhhhHHHHHHHH
Confidence            3455665442  445566655679999999996 9999999999999999999999999  899884

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=98.60  E-value=2.8e-08  Score=93.52  Aligned_cols=44  Identities=27%  Similarity=0.518  Sum_probs=41.2

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      ++++.|+++||.+|++||||.+|++++++||+||+|++|+++|.
T Consensus        25 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql   68 (425)
T PRK09264         25 FDKAKGSWLYDEDGKEYIDFFAGAGALNYGHNNPVLKQALIDYL   68 (425)
T ss_pred             EEeeecCEEEeCCCCEeeecccchhhccCCCCCHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999833

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=98.59  E-value=2.2e-08  Score=94.93  Aligned_cols=49  Identities=18%  Similarity=0.366  Sum_probs=44.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      +++.|+++||.+|++||||.+|++++++||+||+|++|+.+  +++.|.+.
T Consensus        28 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~   78 (443)
T PRK08360         28 VKAENAKVWDIEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTP   78 (443)
T ss_pred             EecceeEEEECCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccc
Confidence            58999999999999999999999999999999999999999  44556554

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=98.57  E-value=2.9e-08  Score=92.10  Aligned_cols=48  Identities=25%  Similarity=0.466  Sum_probs=43.0

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|++.||.+|++||||++|++++++||+||+|++|+.+  +++.+.+
T Consensus        27 ~~~~G~~l~d~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~~   76 (396)
T PRK04073         27 SEAEGVWVKDPEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLTS   76 (396)
T ss_pred             EeeeecEEEECCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhccccc
Confidence            58999999999999999999999999999999999999998  4444443

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=98.56  E-value=2.7e-08  Score=93.32  Aligned_cols=48  Identities=25%  Similarity=0.466  Sum_probs=43.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      .+++|+++||.+|++||||++|++++++||+||+|++|+++|  ++.|+.
T Consensus        20 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~~~~   69 (420)
T TIGR00700        20 ARAEGAILEDVDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFTHTC   69 (420)
T ss_pred             EeeeeeEEEeCCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhccCcc
Confidence            489999999999999999999999999999999999999993  455544

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=98.56  E-value=4.2e-08  Score=92.05  Aligned_cols=49  Identities=24%  Similarity=0.358  Sum_probs=43.8

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +.++.|+++||.+|++||||++|++++++||+||+|++|+.+  +++.|..
T Consensus        26 ~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~   76 (408)
T PRK04612         26 LERGQGSRVWDDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHTS   76 (408)
T ss_pred             EEEeeeCEEEECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccc
Confidence            358999999999999999999999999999999999999999  4455553

>PRK07482 hypothetical protein; Provisional

Probab=98.55  E-value=3e-08  Score=94.48  Aligned_cols=42  Identities=17%  Similarity=0.411  Sum_probs=40.6

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|+++||.+|++||||.+|++++++||+||+|++|+++|
T Consensus        37 ~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q   78 (461)
T PRK07482         37 EGGEGIRITDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQ   78 (461)
T ss_pred             EeeeeeEEEECCCCEEEEcccchhhhcCCCCCHHHHHHHHHH
Confidence            599999999999999999999999999999999999999993

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=98.55  E-value=2.4e-08  Score=94.38  Aligned_cols=59  Identities=22%  Similarity=0.326  Sum_probs=53.3

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--CcccccccCCCCCcccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSDDKTSHIPTF  227 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~~~~~~~~~~  227 (236)
                      ++++.|.+.+|.+|++|||.+||+|++++||+||+|.+|+++  +++-|....+.+|.|++
T Consensus        30 i~~aeG~yl~d~~G~r~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~   90 (449)
T COG0161          30 IVRAEGVYLTDIDGRRYLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAI   90 (449)
T ss_pred             eeecceeEEEeCCCCEEEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHH
Confidence            358999999999999999999999999999999999999999  44667767889999865

>PRK06062 hypothetical protein; Provisional

Probab=98.55  E-value=2.6e-08  Score=94.60  Aligned_cols=48  Identities=21%  Similarity=0.446  Sum_probs=43.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|+++||.+|++||||++|++++++||+||+|++|+++  +++.|+.
T Consensus        40 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~   89 (451)
T PRK06062         40 AGAEGSYVWDYEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTVA   89 (451)
T ss_pred             EeceeeEEEECCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCcC
Confidence            58999999999999999999999999999999999999999  4455554

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=98.55  E-value=3e-08  Score=94.02  Aligned_cols=50  Identities=24%  Similarity=0.416  Sum_probs=44.5

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      ++++.|+++||.+|++||||.+|++++++||+||+|++|+.+  +++.|+..
T Consensus        40 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~   91 (451)
T PRK06918         40 AQSANGALVTDVDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHTGF   91 (451)
T ss_pred             EEeccccEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCccc
Confidence            358999999999999999999999999999999999999998  44555543

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=98.54  E-value=4e-08  Score=93.55  Aligned_cols=49  Identities=29%  Similarity=0.561  Sum_probs=43.9

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++++|+++||.+|++||||++|++++++||+||+|++|+++  +++.|++
T Consensus        39 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~~~~   89 (457)
T PRK05639         39 PKRGFGALIEDVDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQHSM   89 (457)
T ss_pred             EEeeecCEEEeCCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhccccc
Confidence            358999999999999999999999999999999999999999  4455554

>PRK06541 hypothetical protein; Provisional

Probab=98.53  E-value=3.3e-08  Score=94.18  Aligned_cols=48  Identities=19%  Similarity=0.205  Sum_probs=43.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|+++||.+|++||||++|++++++||+||+|++|+++  +++.|..
T Consensus        39 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~~~~   88 (460)
T PRK06541         39 VRGEGCYIWDDRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLAFFP   88 (460)
T ss_pred             EeCcccEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCcCcc
Confidence            58999999999999999999999999999999999999999  4455544

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=98.52  E-value=4.7e-08  Score=92.57  Aligned_cols=49  Identities=29%  Similarity=0.446  Sum_probs=43.9

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      +++.|+++||.+|++||||.+|++++++||+||+|++|+.+  +++.|.+.
T Consensus        41 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~   91 (441)
T PRK05769         41 ERGEGVWVEDVDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFLHYSL   91 (441)
T ss_pred             EecceEEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhccCccC
Confidence            58999999999999999999999999999999999999999  34555543

>PRK08297 L-lysine aminotransferase; Provisional

Probab=98.51  E-value=6.1e-08  Score=91.91  Aligned_cols=62  Identities=37%  Similarity=0.618  Sum_probs=49.4

Q ss_pred             hhhhHhhhhhccCceeeeeeeeeeecceEEec-cccchhhhhccccccccCCCCHHHHH--hhhcCc
Q psy237          149 PQLLENVLLKQSGSVSLFVDYQKSFGNYLVDV-DGNHILDVYTQISSVPLGYNHPALLK--IFDDPA  212 (236)
Q Consensus       149 AE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA-~g~a~lD~~sg~~~~~lGh~~p~i~~--A~~~~~  212 (236)
                      .+.++.++.  ..++++++.++++.|++.||. +|++||||++|++++++||+||+|++  |+++|.
T Consensus        12 ~~~~~~~~~--~~~~p~~~~i~~a~G~~l~D~~dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql   76 (443)
T PRK08297         12 HEVLARHIL--VDGFDLVLDLERSQGSYLVDARTGRRYLDMFTFFASSALGMNHPALADDPEFRAEL   76 (443)
T ss_pred             hHHHHHHHh--hcCCCcceEEEeccCCEEEECCCCCEeeecccCHhhhcCCCCChHHhhHHHHHHHH
Confidence            344444332  344565555679999999996 99999999999999999999999999  999844

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.51  E-value=3.8e-08  Score=92.76  Aligned_cols=54  Identities=20%  Similarity=0.247  Sum_probs=45.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--CcccccccCCCCC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSDDKTSH  223 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~~~~~~  223 (236)
                      .+++|++.||.+|++||||.+|++++++||+||+|++|+++  +++.|.......+
T Consensus        27 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~   82 (422)
T PRK05630         27 TSTDGVFLTLEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHVMFGGLTH   82 (422)
T ss_pred             EeceeeEEEECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCcccCCcCC
Confidence            48999999999999999999999999999999999999999  4455554433333

>KOG1402|consensus

Probab=98.51  E-value=6.3e-08  Score=87.84  Aligned_cols=57  Identities=23%  Similarity=0.373  Sum_probs=47.6

Q ss_pred             ccCceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      .+...+.  .+.++.|+..||..|++|+||.|++++++.|||||+|++|+++  +++...|
T Consensus        37 nyhpLpv--vf~ka~g~~vwD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLtlss   95 (427)
T KOG1402|consen   37 NYHPLPV--VFSKAKGSRVWDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLTLSS   95 (427)
T ss_pred             cCCcCce--EEEecCCcEEECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhhhh
Confidence            3444443  3468999999999999999999999999999999999999999  5455544

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.51  E-value=3.9e-08  Score=93.66  Aligned_cols=54  Identities=20%  Similarity=0.190  Sum_probs=45.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--CcccccccCCCCC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSDDKTSH  223 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~~~~~~  223 (236)
                      +++.|+++||.+|++||||+++++++++||+||+|++|+.+  +++.|.+.....+
T Consensus        43 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~~~~~   98 (460)
T PRK06916         43 ERGEGRKLYDVNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHSTLLGLAN   98 (460)
T ss_pred             EeccccEEEeCCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCccccccCC
Confidence            58999999999999999999999999999999999999998  4455554333333

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=98.51  E-value=4.9e-08  Score=91.83  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=43.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|+++||.+|++||||++|++++++||+||+|++|+++  +++.|+.
T Consensus        27 ~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~   76 (421)
T PRK06777         27 ERAENATLWDVEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFTHTA   76 (421)
T ss_pred             EeeecCEEEeCCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhccccc
Confidence            58999999999999999999999999999999999999999  4455554

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.51  E-value=4.4e-08  Score=91.92  Aligned_cols=48  Identities=21%  Similarity=0.299  Sum_probs=43.2

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      .++.|+++||.+|++||||.+|++++++||+||+|++|+++  +++.+.+
T Consensus        29 ~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~   78 (423)
T PRK05964         29 VRAEGAYLYLADGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHVI   78 (423)
T ss_pred             EeccccEEEeCCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCcc
Confidence            48999999999999999999999999999999999999998  4455543

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.50  E-value=3.6e-08  Score=93.14  Aligned_cols=54  Identities=20%  Similarity=0.261  Sum_probs=46.2

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--CcccccccCCCCC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSDDKTSH  223 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~~~~~~  223 (236)
                      +++.|+++||.+|++||||++|+++.++||+||+|++|+++  +++.|+......+
T Consensus        31 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~   86 (429)
T PRK06173         31 ERADGVMITLKDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHIMFGGFTH   86 (429)
T ss_pred             EeceeeEEEcCCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCccccccCC
Confidence            58999999999999999999999999999999999999999  4455655433333

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=98.50  E-value=4.5e-08  Score=92.45  Aligned_cols=49  Identities=24%  Similarity=0.282  Sum_probs=43.9

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      ..+.|++.||.+|++||||.+|++++++||+||+|++|+++  +++.|.+.
T Consensus        30 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~   80 (428)
T PRK07986         30 VSAEGCELILADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMF   80 (428)
T ss_pred             EeeeeeEEEeCCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccc
Confidence            58999999999999999999999999999999999999998  44555543

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=98.50  E-value=4.5e-08  Score=92.63  Aligned_cols=49  Identities=20%  Similarity=0.397  Sum_probs=43.5

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      ++++.|+++||.+|++||||++|++++++||+||+|++|+++|  ++.|..
T Consensus        42 i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~   92 (443)
T PRK06058         42 VARAGGGIVEDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFTHTC   92 (443)
T ss_pred             EEeeeeeEEEeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhccCcc
Confidence            3589999999999999999999999999999999999999993  444443

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=98.50  E-value=4.2e-08  Score=92.88  Aligned_cols=44  Identities=30%  Similarity=0.529  Sum_probs=41.2

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      ++++.|+++||.+|++||||.+|++++++||+||+|++|+++|.
T Consensus        25 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~   68 (442)
T TIGR00709        25 FAKAQGCWVTDVEGKEYLDFLAGAGTLALGHNHPNMKQKILDYL   68 (442)
T ss_pred             EEeccccEEEeCCCCEEEEccccHhhhcCCCCCHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999843

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.49  E-value=4.8e-08  Score=93.39  Aligned_cols=50  Identities=18%  Similarity=0.207  Sum_probs=44.3

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--ccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCSD  218 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~~  218 (236)
                      ++++.|+++||.+|++||||++|++++++||+||+|++|+++|  ++.|.+.
T Consensus        50 i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~  101 (472)
T PRK08742         50 IARGEGAWLVGHDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVML  101 (472)
T ss_pred             EEecccCEEEeCCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCccc
Confidence            3589999999999999999999999999999999999999984  3555543

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.49  E-value=4.3e-08  Score=93.18  Aligned_cols=50  Identities=20%  Similarity=0.249  Sum_probs=44.5

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      ++++.|+++||.+|++||||++|++++++||+||+|++|+++  +++.|.+.
T Consensus        40 i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~   91 (453)
T PRK06943         40 VARGEGAWLYDRDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAML   91 (453)
T ss_pred             EEecccCEEEeCCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence            358999999999999999999999999999999999999999  44555544

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=98.49  E-value=5.3e-08  Score=91.34  Aligned_cols=65  Identities=26%  Similarity=0.407  Sum_probs=52.5

Q ss_pred             ceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc-ccccccCCCCCccccc
Q psy237          162 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA-TVKCSDDKTSHIPTFA  228 (236)
Q Consensus       162 ~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~-~~~~~~~~~~~~~~~~  228 (236)
                      ..|++++  ++.|+++||.||++|+||+.+|+...+||+||.|++|++++. ...++..+++.....|
T Consensus        34 ~~P~fi~--~g~Ga~l~DvDGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~Pte~Ei~~A   99 (432)
T COG0001          34 GYPIFIE--RGKGAYLTDVDGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAPTELEVELA   99 (432)
T ss_pred             CCCeeEE--eccCCeEEeCCCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence            3555545  999999999999999999999999999999999999999944 4444456666555443

>PRK07481 hypothetical protein; Provisional

Probab=98.49  E-value=4.8e-08  Score=92.74  Aligned_cols=48  Identities=23%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      +++.|+++||.+|++||||++|++++++||+||+|++|+++|  .+.|++
T Consensus        29 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~   78 (449)
T PRK07481         29 VRGDGVYVYDIDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYS   78 (449)
T ss_pred             EeccccEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhcccee
Confidence            589999999999999999999999999999999999999983  455554

>PRK05965 hypothetical protein; Provisional

Probab=98.49  E-value=4.7e-08  Score=93.06  Aligned_cols=48  Identities=19%  Similarity=0.410  Sum_probs=43.2

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      ++++|++.||++|++||||++|++++++||+||+|++|+++|  ++.|..
T Consensus        33 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~   82 (459)
T PRK05965         33 ASAKGATLTDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYAT   82 (459)
T ss_pred             EeeeEeEEEECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcc
Confidence            589999999999999999999999999999999999999994  344543

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=98.48  E-value=5.4e-08  Score=91.53  Aligned_cols=48  Identities=25%  Similarity=0.383  Sum_probs=43.2

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      ++++|+++||.+|++||||++|++++++||+||+|++|+++  +++.|..
T Consensus        27 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~   76 (421)
T PRK09792         27 QSAENATLKDVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTA   76 (421)
T ss_pred             EeccccEEEeCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhccCcc
Confidence            58999999999999999999999999999999999999999  3345543

>PRK06917 hypothetical protein; Provisional

Probab=98.48  E-value=5.3e-08  Score=92.41  Aligned_cols=42  Identities=19%  Similarity=0.313  Sum_probs=40.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|+++||++|++||||++|++++++||+||+|++|+++|
T Consensus        18 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~q   59 (447)
T PRK06917         18 SHGKGVYLYDQNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQ   59 (447)
T ss_pred             EeeeeeEEEeCCCCEEEECchhHHhccCCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999993

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=98.48  E-value=7.5e-08  Score=91.94  Aligned_cols=44  Identities=70%  Similarity=1.207  Sum_probs=41.5

Q ss_pred             eeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          168 DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       168 ~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      .++++.|+++||.+|++||||++|++++++||+||+|++|++++
T Consensus        43 ~~~~a~G~~l~D~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q   86 (464)
T TIGR00699        43 DYEKSRGNYLVDVDGNRLLDLYSQISSIPIGYNNPALLKAAQSP   86 (464)
T ss_pred             EEEecccCEEEeCCCCEEEEccCCHhhhcCCCCCHHHHHHHHHH
Confidence            44699999999999999999999999999999999999999973

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=98.48  E-value=5.4e-08  Score=92.29  Aligned_cols=49  Identities=20%  Similarity=0.289  Sum_probs=43.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      +++.|++.||.+|++||||.+|++++++||+||+|++|+++  +.+.|.+.
T Consensus        36 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~   86 (445)
T PRK09221         36 VSAEGMYYTDADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPA   86 (445)
T ss_pred             EeccccEEEeCCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccc
Confidence            58999999999999999999999999999999999999998  33555543

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=98.47  E-value=8.1e-08  Score=90.42  Aligned_cols=48  Identities=25%  Similarity=0.432  Sum_probs=43.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|++.||.+|++||||++|++++++||+||+|++|+.+  +++.|.+
T Consensus        30 ~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~   79 (433)
T PRK08117         30 VKGEGCYYYGVDGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGP   79 (433)
T ss_pred             EeeeeeEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcc
Confidence            58999999999999999999999999999999999999999  3455544

>PRK07483 hypothetical protein; Provisional

Probab=98.47  E-value=5.5e-08  Score=92.18  Aligned_cols=42  Identities=26%  Similarity=0.414  Sum_probs=40.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|+++||.+|++||||++|++++++||+||+|++|+++|
T Consensus        17 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~q   58 (443)
T PRK07483         17 VAGEGIYLIDATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQ   58 (443)
T ss_pred             EeceEEEEEeCCCCEEEEcCccHhhhccCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999993

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.47  E-value=6.8e-08  Score=91.97  Aligned_cols=43  Identities=35%  Similarity=0.618  Sum_probs=40.9

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      .++.|+++||.+|++||||++|++++++||+||+|++|+++|.
T Consensus        45 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~   87 (459)
T PRK06931         45 AKAQGVWVTDVEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVL   87 (459)
T ss_pred             EeccccEEEeCCCCEEEEcccchhhccCCCCCHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999843

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=98.46  E-value=6.5e-08  Score=92.30  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=43.9

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      .++.|++.||.+|++||||++|++++++||+||+|++|+++  +++.|.+.
T Consensus        34 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~   84 (466)
T PRK07030         34 RRGEGVWLEDFEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVIL   84 (466)
T ss_pred             EeeeccEEEECCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCccc
Confidence            58999999999999999999999999999999999999998  44555543

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=98.46  E-value=1.2e-07  Score=88.52  Aligned_cols=48  Identities=25%  Similarity=0.347  Sum_probs=43.0

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      +++.|++.||.+|++||||.+|++++++||+||+|++|+.++  ++.|+.
T Consensus        26 ~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~   75 (406)
T PRK12381         26 VRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTG   75 (406)
T ss_pred             EEeecCEEEeCCCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhccccc
Confidence            589999999999999999999999999999999999999994  344543

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=98.45  E-value=8.3e-08  Score=88.90  Aligned_cols=49  Identities=27%  Similarity=0.405  Sum_probs=43.5

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      ++++.|++.||++|++||||++|++++++||+||+|++|+++  +.+.|+.
T Consensus        10 ~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~~   60 (364)
T PRK04013         10 LVRGEGIYVWDSQGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVAG   60 (364)
T ss_pred             EEEeecCEEEECCCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCcc
Confidence            358999999999999999999999999999999999999998  3344543

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.45  E-value=9e-08  Score=90.20  Aligned_cols=44  Identities=30%  Similarity=0.551  Sum_probs=41.2

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      ++++.|+++||.+|++||||++|++++++||+||+|++|+.+|.
T Consensus        39 ~~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~   82 (428)
T PRK12389         39 MERGKGAYFYDVDGNKYIDYLAAYGPIITGHAHPHITKAITEAA   82 (428)
T ss_pred             EEeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999843

>PRK07678 aminotransferase; Validated

Probab=98.44  E-value=8.2e-08  Score=91.20  Aligned_cols=42  Identities=26%  Similarity=0.449  Sum_probs=40.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      .+++|+++||.+|++||||++|++++++||+||+|++|+++|
T Consensus        34 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q   75 (451)
T PRK07678         34 AKAEGAWVTDIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQ   75 (451)
T ss_pred             EeeeeeEEEeCCCCEEEEccccHHhhcCCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999983

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=98.44  E-value=7e-08  Score=91.46  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=43.0

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      +++.|+++||.+|++||||++|++++++||+||+|++|+++|  ++.|..
T Consensus        33 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~   82 (442)
T PRK13360         33 VAAKGMYYTTHDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAP   82 (442)
T ss_pred             EeeeeeEEEeCCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcc
Confidence            589999999999999999999999999999999999999983  344444

>PRK12403 putative aminotransferase; Provisional

Probab=98.44  E-value=7.4e-08  Score=91.72  Aligned_cols=48  Identities=23%  Similarity=0.218  Sum_probs=43.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|+++||.+|++||||++|+++.++||+||+|++|+++  +++.+.+
T Consensus        41 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~~   90 (460)
T PRK12403         41 VRGEGLHLWDNDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYYN   90 (460)
T ss_pred             EeceeeEEEeCCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCee
Confidence            58999999999999999999999999999999999999999  4455544

>PLN00144 acetylornithine transaminase

Probab=98.43  E-value=8.2e-08  Score=89.15  Aligned_cols=48  Identities=27%  Similarity=0.364  Sum_probs=42.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|++.||.+|++||||++|++++++||+||+|++|+.+  +++.|.+
T Consensus         2 ~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~   51 (382)
T PLN00144          2 VSGKGCKLYDVEGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLAHVS   51 (382)
T ss_pred             eeeeccEEEeCCCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcCCcc
Confidence            37899999999999999999999999999999999999999  3344543

>PRK07036 hypothetical protein; Provisional

Probab=98.42  E-value=8.6e-08  Score=91.47  Aligned_cols=48  Identities=23%  Similarity=0.344  Sum_probs=43.0

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      .++.|++.||.+|++||||++|++++++||+||+|++|+++|  ++.|.+
T Consensus        38 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~   87 (466)
T PRK07036         38 VEAEGIYVTDADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYT   87 (466)
T ss_pred             EeCceeEEEECCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCcccc
Confidence            489999999999999999999999999999999999999984  344544

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=98.42  E-value=9.7e-08  Score=91.09  Aligned_cols=44  Identities=25%  Similarity=0.565  Sum_probs=41.3

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      +.++.|+++||.+|++||||++|++++++||+||+|++|+++|.
T Consensus        49 i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql   92 (464)
T PRK06938         49 LKRARGIYVEDVEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVL   92 (464)
T ss_pred             EEeccccEEEeCCCCEEEEccCCccccccCCCCHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999843

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=98.41  E-value=1.1e-07  Score=89.75  Aligned_cols=42  Identities=26%  Similarity=0.430  Sum_probs=40.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|+++||.+|++||||.+|++++++||+||+|++|+++|
T Consensus        35 ~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q   76 (431)
T PRK06209         35 QRGSGAHVWDVDGNEYIEYGMGLRAVGLGHAYPPVVEAVREA   76 (431)
T ss_pred             EeccCCEEEeCCCCEEEEccccccchhcCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999983

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=98.41  E-value=1e-07  Score=90.48  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=42.0

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      +.+.|++.||++|++||||++|++++++||+||+|++|+++|  ++.+.+
T Consensus        62 ~~~~g~~l~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~~  111 (442)
T TIGR03372        62 QAGGLNTLIDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLHS  111 (442)
T ss_pred             EeCCeeEEEECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCcc
Confidence            567779999999999999999999999999999999999994  344443

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK07480 putative aminotransferase; Validated

Probab=98.41  E-value=8.8e-08  Score=91.17  Aligned_cols=48  Identities=27%  Similarity=0.364  Sum_probs=43.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      .++.|++.||.+|++||||++|++++++||+||+|++|+++  +++.|.+
T Consensus        37 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~   86 (456)
T PRK07480         37 TRAEGVYLWDSEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYN   86 (456)
T ss_pred             EeceeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcc
Confidence            48999999999999999999999999999999999999999  3444443

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=98.40  E-value=1.2e-07  Score=90.31  Aligned_cols=42  Identities=21%  Similarity=0.401  Sum_probs=40.4

Q ss_pred             eeeec-ceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFG-NYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G-~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      .++.| +++||++|++||||++|++++++||+||+|++|+.+|
T Consensus        68 ~~~~G~~~l~D~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q  110 (459)
T PRK11522         68 WQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQ  110 (459)
T ss_pred             EeccCeEEEEECCCCEEEECCcCHHhhhcCCCCHHHHHHHHHH
Confidence            58999 9999999999999999999999999999999999993

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=98.39  E-value=2e-07  Score=86.78  Aligned_cols=42  Identities=26%  Similarity=0.397  Sum_probs=40.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|++.||.+|++||||.+|+++.++||+||+|++|+.++
T Consensus        22 ~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~   63 (397)
T TIGR03246        22 VRGEGSRVWDQQGKEYIDFAGGIAVNALGHAHPELVKALIEQ   63 (397)
T ss_pred             EEeecCEEEeCCCCEEEECCcCHhhccCCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999984

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PLN02624 ornithine-delta-aminotransferase

Probab=98.39  E-value=1.8e-07  Score=89.44  Aligned_cols=43  Identities=26%  Similarity=0.516  Sum_probs=40.7

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +.++.|+++||.+|++||||.+|++++++||+||+|++|++++
T Consensus        61 ~~~a~G~~l~d~dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~q  103 (474)
T PLN02624         61 FSRAKGSRIWDPEGKKYLDFLSAYSAVNQGHCHPKIIKALTEQ  103 (474)
T ss_pred             EEeeeeCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999993

>PRK06105 aminotransferase; Provisional

Probab=98.38  E-value=1.1e-07  Score=90.52  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=42.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--ccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKC  216 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~  216 (236)
                      +++.|++.||.+|++||||++|++++++||+||+|++|+++|  ++.++
T Consensus        35 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~   83 (460)
T PRK06105         35 ERGEGIYVYDDAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFY   83 (460)
T ss_pred             EeeeEEEEEECCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCe
Confidence            589999999999999999999999999999999999999993  44443

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=98.38  E-value=1.9e-07  Score=89.42  Aligned_cols=43  Identities=23%  Similarity=0.386  Sum_probs=40.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      +++.|++.||.+|++||||.+|++++++||+||+|++|+++|.
T Consensus        86 ~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql  128 (474)
T PLN02482         86 DRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETM  128 (474)
T ss_pred             EEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999933

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=98.37  E-value=1.7e-07  Score=88.78  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=40.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      +++.|+++||++|++||||.+|++++++||+||+|++|++++.
T Consensus        40 ~~a~G~~l~D~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~   82 (433)
T PRK00615         40 SSASGDIFIDSLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGA   82 (433)
T ss_pred             EEeeeCEEEECCCCEEEEcccchhccccCCCCHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999843

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=98.37  E-value=1.5e-07  Score=90.67  Aligned_cols=48  Identities=25%  Similarity=0.392  Sum_probs=43.0

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|++.||.+|++||||.+|+++.++||+||+|++|+++  +++.+.+
T Consensus        76 ~~~~G~~l~D~dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~~~~  125 (504)
T PLN02760         76 EKSEGSYVYDINGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLPFYH  125 (504)
T ss_pred             EeeeeeEEEECCCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhcccee
Confidence            58999999999999999999999999999999999999999  3444443

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=98.35  E-value=2.3e-07  Score=85.62  Aligned_cols=42  Identities=31%  Similarity=0.579  Sum_probs=40.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      .++.|++.||.+|++|+||.+|++++++||+||+|++|+.++
T Consensus        18 ~~~~G~~~~d~dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~   59 (389)
T PRK01278         18 ERGEGVWLIDEDGERYLDFASGIAVNSLGHAHPHLVEALKEQ   59 (389)
T ss_pred             EeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999994

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=98.34  E-value=1.1e-07  Score=87.05  Aligned_cols=48  Identities=35%  Similarity=0.537  Sum_probs=40.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      +++.|+++||.+|++|+||.++++++++||+||+|.+|++++  ...+.+
T Consensus         3 ~~a~G~~l~d~dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~   52 (339)
T PF00202_consen    3 ERAEGAYLWDVDGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVS   52 (339)
T ss_dssp             EEEEBTEEEETTSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCS
T ss_pred             EEeecCEEEECCCCEEEECCCCccceecCCCccccchhHHHHhhhccccc
Confidence            489999999999999999999999999999999999999983  344443

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK07046 aminotransferase; Validated

Probab=98.32  E-value=2.8e-07  Score=87.70  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=40.9

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      ++++.|+++||.+|++||||.+++++.++||+||+|++|++++
T Consensus        61 ~~~a~G~~v~D~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q  103 (453)
T PRK07046         61 VAEARGARFTDVDGHRYDDFCLGDTGAMFGHSPAPVARALAEQ  103 (453)
T ss_pred             EEeeeeCEEEeCCCCEEEEecccccccccCCCCHHHHHHHHHH
Confidence            3599999999999999999999999999999999999999983

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=98.32  E-value=3.1e-07  Score=85.78  Aligned_cols=47  Identities=19%  Similarity=0.325  Sum_probs=42.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--ccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKC  216 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~  216 (236)
                      +++.|++.||.+|++||||.+|++++++||+||+|++|+.++  ++.+.
T Consensus        23 ~~~~G~~~~d~dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~~~   71 (395)
T PRK03715         23 THGKGSWLYDHNGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLINP   71 (395)
T ss_pred             EeeecCEEEECCCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcccc
Confidence            589999999999999999999999999999999999999984  34444

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=98.27  E-value=6.8e-07  Score=83.16  Aligned_cols=42  Identities=29%  Similarity=0.456  Sum_probs=40.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|+++||.+|++|+||.+|+++.++||+||+|.+|+.++
T Consensus        27 ~~~~G~~~~d~dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~   68 (403)
T PRK05093         27 VRGEGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVKALKEQ   68 (403)
T ss_pred             EEeecCEEEeCCCCEEEEcCcCHHhccCCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999983

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=98.27  E-value=4.1e-07  Score=85.46  Aligned_cols=47  Identities=19%  Similarity=0.276  Sum_probs=42.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKC  216 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~  216 (236)
                      +++.|++.||++|++||||.+|++++++||+||+|++|+.+  +.+.|.
T Consensus        28 ~~~~G~~l~d~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~~~   76 (425)
T PRK08088         28 DRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHT   76 (425)
T ss_pred             EeeeeCEEEeCCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCCCc
Confidence            58999999999999999999999999999999999999998  344444

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=98.26  E-value=5.6e-07  Score=83.32  Aligned_cols=48  Identities=29%  Similarity=0.411  Sum_probs=42.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      .++.|++.||.+|++||||.++++++++||+||+|.+|+.+  ++..+.+
T Consensus        28 ~~~~G~~~~d~~g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~~~~   77 (401)
T PRK00854         28 TRGEGVWVWDTDGNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLTLTS   77 (401)
T ss_pred             EeeeeCEEEECCCCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhccccc
Confidence            58999999999999999999999999999999999999999  3344433

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=98.24  E-value=5e-07  Score=84.47  Aligned_cols=42  Identities=31%  Similarity=0.561  Sum_probs=40.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      .++.|+++||.+|++||||.+|++++++||+||+|++|+.++
T Consensus        35 ~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q   76 (423)
T TIGR00713        35 ARGKGAYLYDVDGNEYIDYVLSWGPLILGHAHPRVVEAVKEA   76 (423)
T ss_pred             EeccCCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999983

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=98.20  E-value=6.5e-07  Score=82.67  Aligned_cols=48  Identities=25%  Similarity=0.398  Sum_probs=42.9

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      +.+.|++.||++|++||||.+++++.++||+||+|++|+.++  .+.|.+
T Consensus        18 ~~~~G~~~~d~dg~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~   67 (400)
T PTZ00125         18 KRGKGVFVWDVEGKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLTLTS   67 (400)
T ss_pred             EeeecCEEEeCCCCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhccccc
Confidence            589999999999999999999999999999999999999984  444443

>KOG1405|consensus

Probab=98.18  E-value=1e-06  Score=80.85  Aligned_cols=64  Identities=56%  Similarity=0.938  Sum_probs=52.3

Q ss_pred             ceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc-Cccccccc-CCCCCcc
Q psy237          162 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD-PATVKCSD-DKTSHIP  225 (236)
Q Consensus       162 ~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~-~~~~~~~~-~~~~~~~  225 (236)
                      ...++.+++...|+++.|+|||++||.+++|+++.+||+||.++++++. +.+....+ ....++|
T Consensus        55 ~v~F~~dYEkS~GNYlvDvDGN~lLDvYsQIsSvplGYn~P~LvK~a~~p~~~~~lvnRPALg~fP  120 (484)
T KOG1405|consen   55 AVHFFVDYEKSIGNYLVDVDGNRLLDVYSQISSVPLGYNNPALVKAAQQPQNATMLVNRPALGNFP  120 (484)
T ss_pred             ceEEehhhhhhcCceEEecCCCeeehhhhhhcccccCCCCHHHHHHhcChHHHHHHhccccccCCC
Confidence            3456678899999999999999999999999999999999999999998 44444333 4455555

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=98.17  E-value=6.7e-07  Score=84.37  Aligned_cols=41  Identities=27%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      .++.|++.||.+|++||||.+++++.++||+||+|++|+.+
T Consensus        32 ~~a~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~   72 (427)
T TIGR00508        32 ESADGVELTLDDGRRLIDGMSSWWAAIHGYNHPRLNAAAQK   72 (427)
T ss_pred             EeeeeeEEEeCCCCEEEEccchHHHhcCCCCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999998

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>KOG1401|consensus

Probab=98.16  E-value=1.1e-06  Score=81.70  Aligned_cols=61  Identities=16%  Similarity=0.278  Sum_probs=51.2

Q ss_pred             cCceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--CcccccccCCCC
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSDDKTS  222 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~~~~~  222 (236)
                      +.+.+++++  .++|+..+|.+|++|+||+++|++..+||+||+|.+|+.+  .++.|.+....+
T Consensus        35 ~a~~pv~~~--~gkg~kl~D~~g~EyiD~~ssw~~~~~Ghanpev~ral~~q~~k~~hs~~~~~t   97 (433)
T KOG1401|consen   35 YARYPVVIE--SGKGSKLFDPDGKEYIDFTSSWAVTILGHANPEVARALAEQAKKLGHSSNGYFT   97 (433)
T ss_pred             cCCCceeee--cceeeeeecCCcceeeeeccceeccccCCCCHHHHHHHHHHHhhheeccCcccc
Confidence            444555444  8999999999999999999999999999999999999999  557788754443

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=98.11  E-value=1.6e-06  Score=79.58  Aligned_cols=43  Identities=28%  Similarity=0.418  Sum_probs=40.6

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      ++++.|++.||++|++||||.++++++++||+||+|++|+.++
T Consensus        15 ~~~~~G~~~~d~~G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~   57 (377)
T PRK02936         15 IVKGKGTKVTDNNGKTYLDFTSGIAVCNLGHCHPTVTKAVQEQ   57 (377)
T ss_pred             EEEeecCEEEeCCCCEEEECCcchhhccCCCCCHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999983

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=98.09  E-value=1.4e-06  Score=83.11  Aligned_cols=42  Identities=29%  Similarity=0.535  Sum_probs=38.4

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      ++++.|+++||.+|++||||.+ .+++++||+||+|++|+++|
T Consensus        58 i~~a~G~~l~D~dG~~ylD~~g-~~~~~lGh~~p~v~~Ai~~q   99 (459)
T PRK06082         58 LASAEGIYIEDVDGKKYMDFHG-NNVHQLGYGHPHVIEKVKEQ   99 (459)
T ss_pred             EEeeeeeEEEECCCCEEEEccc-HhhcccCCCCHHHHHHHHHH
Confidence            3589999999999999999985 59999999999999999994

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=98.08  E-value=2.5e-06  Score=79.24  Aligned_cols=42  Identities=31%  Similarity=0.485  Sum_probs=39.9

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      ..+.|++++|.+|++||||.+++++.++||+||+|++|+.++
T Consensus        24 ~~~~g~~~~~~~g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~   65 (401)
T TIGR01885        24 SKAEGVHVWDVEGKRYLDFLSAYSAVNQGHCHPKIVKALTEQ   65 (401)
T ss_pred             EeeecCEEEeCCCCEEEEcccCHhhccCCCCCHHHHHHHHHH
Confidence            479999999999999999999999999999999999999984

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=97.94  E-value=3.8e-06  Score=79.11  Aligned_cols=43  Identities=33%  Similarity=0.558  Sum_probs=40.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      ..+.|++.||++|++||||.+|+++.++||+||+|++|+.++.
T Consensus        37 ~~a~G~~l~d~dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~   79 (426)
T PRK00062         37 ERAKGAYLYDVDGNEYIDYVGSWGPMILGHAHPEVVEAVIEAA   79 (426)
T ss_pred             EeCcCCEEEeCCCCEEEEcccchhhhhcCCCCHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999833

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=97.88  E-value=2.2e-05  Score=71.45  Aligned_cols=49  Identities=29%  Similarity=0.357  Sum_probs=41.2

Q ss_pred             ccccceeeecccccEEEeCCCCEEEeccCCcccccCCC-ChHHHHHHhhcccccc
Q psy237           79 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVK  132 (236)
Q Consensus        79 ~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~  132 (236)
                      +...| ++++++|++||+ +|++|||+.++.   ++|| .+|+|++++++++...
T Consensus        20 ~~~~~-~~~~~~g~~~~~-~g~~~id~~~~~---~~g~~~~~~v~~a~~~~~~~~   69 (385)
T PRK05958         20 YRSLR-PREGGAGRWLVV-DGRRMLNFASND---YLGLARHPRLIAAAQQAARRY   69 (385)
T ss_pred             Ccccc-ccccCCCceeEe-CCceEEEeeCCC---cccCCCCHHHHHHHHHHHHhc
Confidence            33344 589999999997 999999999873   5898 7999999999998764

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=97.85  E-value=1.6e-05  Score=72.84  Aligned_cols=48  Identities=17%  Similarity=0.292  Sum_probs=41.9

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCC-ChHHHHHHhhcccccc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVK  132 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~  132 (236)
                      ++|..+.+++|+||| .||++||||.++   ..+|| .+|++++++.+++.+.
T Consensus        15 ~~~~~~~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~~~~~~   63 (385)
T TIGR01825        15 ISIRVLESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQAIQQY   63 (385)
T ss_pred             ccccccccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHHHHHHc
Confidence            367889999999999 999999999775   34799 9999999999988754

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=97.84  E-value=8.8e-06  Score=74.87  Aligned_cols=41  Identities=32%  Similarity=0.466  Sum_probs=39.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.||.+|++|+||.+|++++++||+||+|.+|+.+
T Consensus        26 ~~~~G~~~~d~dg~~~iD~~~g~~~~~lG~~~p~v~~a~~~   66 (396)
T PRK02627         26 VRGEGARLWDDDGKEYLDFLAGIAVNNLGHCHPKLVEAIQE   66 (396)
T ss_pred             EeeeeCEEEeCCCCEEEECCccHHhccCCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999988

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=97.84  E-value=1.1e-05  Score=74.63  Aligned_cols=41  Identities=32%  Similarity=0.493  Sum_probs=39.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      ..+.|++.||.+|++|+||.++++++++||+||+|.+|+.+
T Consensus        30 ~~~~G~~~~d~dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~   70 (398)
T PRK03244         30 VRGEGAVVWDVDGKEYLDLLGGIAVNALGHAHPAVVEAVTR   70 (398)
T ss_pred             EEeeecEEEECCCCEEEECCcCHhhccCCCCCHHHHHHHHH
Confidence            48899999999999999999999999999999999999998

>PRK06148 hypothetical protein; Provisional

Probab=97.80  E-value=1.1e-05  Score=83.92  Aligned_cols=42  Identities=24%  Similarity=0.565  Sum_probs=38.4

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      ++++.|+++||++|++||||++++  +++||+||+|++|+.+|.
T Consensus       610 i~~g~G~~l~D~dG~~ylD~~~g~--~~lGH~hp~v~~Ai~~q~  651 (1013)
T PRK06148        610 FVRGWGVWLIDNRGRAYLDCFNNV--CHVGHAHPRVVAAAARQA  651 (1013)
T ss_pred             EEEeeecEEEECCCCEEEEcccCh--hhcCCCCHHHHHHHHHHH
Confidence            469999999999999999999984  889999999999999943

>PRK07179 hypothetical protein; Provisional

Probab=97.77  E-value=3.8e-05  Score=71.38  Aligned_cols=49  Identities=14%  Similarity=0.112  Sum_probs=41.9

Q ss_pred             cccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           74 LQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        74 ~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      ++.....+.++++.+++|.+++|.+||.|||+.          +||+|++++.+|+++.
T Consensus        36 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~YL~l~----------~~p~v~~a~~~~~~~~   84 (407)
T PRK07179         36 RVNKNWNGKHLVLGKTPGPDAIILQSNDYLNLS----------GHPDIIKAQIAALQEE   84 (407)
T ss_pred             hhccCcCCceEEeecCCCCcEEEeecCCccCCC----------CCHHHHHHHHHHHHHh
Confidence            333444567888999999999999999999987          8999999999999875

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=97.72  E-value=1.8e-05  Score=72.78  Aligned_cols=41  Identities=37%  Similarity=0.683  Sum_probs=39.0

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      ++++|+++||.+|++||||.+++++.++|| ||+|.+|+.++
T Consensus        16 ~~~~G~~l~d~dg~~~lD~~s~~~~~~lG~-~p~v~~a~~~~   56 (375)
T PRK04260         16 VKAEGNYLIDTDGKKYLDFSSGIGVTNLGF-HPQVQQALQKQ   56 (375)
T ss_pred             EEeeeCEEEeCCCCEEEECCCCcccccCCC-CHHHHHHHHHH
Confidence            589999999999999999999999999999 99999999983

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=97.59  E-value=3.3e-05  Score=71.25  Aligned_cols=42  Identities=38%  Similarity=0.690  Sum_probs=39.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      ..+.|.+.||.+|++||||.++++..++||+||+|.+|+.++
T Consensus        23 ~~~~g~~~~d~dG~~~id~~~~~~~~~lG~~~p~v~~a~~~~   64 (413)
T cd00610          23 VRAEGAYLYDVDGNRYLDFLSGIGVLNLGHNHPEVVEALKEQ   64 (413)
T ss_pred             EeeecCEEEeCCCCEEEEcCccHHhhccCCCCHHHHHHHHHH
Confidence            478999999999999999999999999999999999999883

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.54  E-value=3.7e-05  Score=78.13  Aligned_cols=59  Identities=12%  Similarity=0.106  Sum_probs=50.9

Q ss_pred             eeeecc----eEEecccc----chhhhhccccccccC-CCCHHHHHhhhc--CcccccccCCCCCccccc
Q psy237          170 QKSFGN----YLVDVDGN----HILDVYTQISSVPLG-YNHPALLKIFDD--PATVKCSDDKTSHIPTFA  228 (236)
Q Consensus       170 ~~~~G~----sgsDA~g~----a~lD~~sg~~~~~lG-h~~p~i~~A~~~--~~~~~~~~~~~~~~~~~~  228 (236)
                      ..+.|.    +.+|.+|+    +|+|+.++++++++| |+||+|++|+.+  +++.|+.....+|.|++.
T Consensus       344 ~~a~G~~~~~~~~d~~G~~~~~~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~hv~~~~~~hepa~~  413 (817)
T PLN02974        344 DSRCGEDFSVYKPKTNSTCSIVQQFDACASWWTQGPDPTLQPELARAVAYAAGRYGHVMFPENVHEPALR  413 (817)
T ss_pred             EeeecCceeEEEECCCCCcccceEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCCccccCccCCHHHHH
Confidence            478888    99999998    999999999999999 689999999999  557788766677777653

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=97.48  E-value=6.2e-05  Score=68.73  Aligned_cols=41  Identities=32%  Similarity=0.592  Sum_probs=39.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +++.|++.+|.+|++|+||.+|++.+++||+||+|.+|+.+
T Consensus        14 ~~~~g~~~~~~~g~~~id~~~~~~~~~lG~~~p~v~~a~~~   54 (379)
T TIGR00707        14 VRGKGAYVYDVNGKEYLDFVAGIAVNSLGHAHPKLVEALKE   54 (379)
T ss_pred             EEeecCEEEeCCCCEEEEcCcchhhccCCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999988

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK06149 hypothetical protein; Provisional

Probab=97.45  E-value=6.4e-05  Score=77.83  Aligned_cols=42  Identities=24%  Similarity=0.400  Sum_probs=37.9

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      ++++.|++.||.+|++||||++++  .++||+||+|++|+.+|.
T Consensus       571 i~~g~G~~l~D~dG~~ylD~~~~~--~~lGh~hp~v~~Ai~~q~  612 (972)
T PRK06149        571 IERGWRHHLFDMAGRSYLDMVNNV--TVLGHGHPRLAAAAARQW  612 (972)
T ss_pred             EEEeeeeEEEeCCCCEEEECCCCc--cccCCCCHHHHHHHHHHH
Confidence            458999999999999999999986  489999999999999843

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=97.33  E-value=0.00048  Score=63.00  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=40.1

Q ss_pred             ceeeecccccEEEeCCCCEEEeccCCcccccCCC-ChHHHHHHhhcccccc
Q psy237           83 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVK  132 (236)
Q Consensus        83 p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~  132 (236)
                      +..+++++|.+|||+||+.||||.+|   ..+|| .+|++.+++.+++.+.
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~i~l~~~---~~~~~~~~~~i~~a~~~~~~~~   72 (397)
T PRK06939         25 ERVITSPQGADITVADGKEVINFCAN---NYLGLANHPELIAAAKAALDSH   72 (397)
T ss_pred             cccccCCCCceEEecCCCeEEEeecc---CccccCCCHHHHHHHHHHHHHc
Confidence            35689999999999999999999876   24788 7999999999988764

>PRK07505 hypothetical protein; Provisional

Probab=97.19  E-value=0.0002  Score=66.59  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=36.7

Q ss_pred             eeeeecceEEeccccchhhhhccccccccC-CCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLG-YNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lG-h~~p~i~~A~~~~~  212 (236)
                      ++.+.|++.||.+|++||||.+   +.++| |+||+|++|+.++.
T Consensus        32 ~~~~~G~~~~d~~g~~~ld~~s---~~~lgl~~~p~v~~A~~~~l   73 (402)
T PRK07505         32 VGEREGILITLADGHTFVNFVS---CSYLGLDTHPAIIEGAVDAL   73 (402)
T ss_pred             eeccCCccEEecCCceEEEeec---CCccCCCCCHHHHHHHHHHH
Confidence            3689999999999999999999   46889 99999999999843

>PLN02822 serine palmitoyltransferase

Probab=96.89  E-value=0.0013  Score=63.23  Aligned_cols=48  Identities=4%  Similarity=0.042  Sum_probs=39.7

Q ss_pred             eeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccccc
Q psy237           84 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTF  134 (236)
Q Consensus        84 ~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~  134 (236)
                      .++.+++|++++ +||++||||.++......  +||+|++|+++++++..+
T Consensus        94 ~~~~~~~G~~i~-~~G~~~id~~s~~~lgl~--~~~~i~ea~~~al~~~G~  141 (481)
T PLN02822         94 PVLESAAGPHTI-INGKDVVNFASANYLGLI--GNEKIKESCTSALEKYGV  141 (481)
T ss_pred             CceecCCCCeEE-ECCceEEEeECCCcCCCC--CCHHHHHHHHHHHHHhCC
Confidence            368899999999 899999999887553322  599999999999998543

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=96.80  E-value=0.0025  Score=57.18  Aligned_cols=43  Identities=23%  Similarity=0.381  Sum_probs=37.4

Q ss_pred             eecccccEEEeCCCCEEEeccCCcccccCCC-ChHHHHHHhhcccccc
Q psy237           86 YQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVK  132 (236)
Q Consensus        86 i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~  132 (236)
                      +.+++|.++. .||++||||.+|   .++|+ .||+|++++++++.+.
T Consensus         3 ~~~~~~~~~~-~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~   46 (360)
T TIGR00858         3 LDRGPGPEVV-RDGRRLLNFSSN---DYLGLASHPEVIQAAQQGAEQY   46 (360)
T ss_pred             cccCCCCeEE-ECCceEEecccC---CcccCCCCHHHHHHHHHHHHhc
Confidence            5689999997 899999999997   46895 8999999999988763

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>KOG1403|consensus

Probab=96.35  E-value=0.0017  Score=58.93  Aligned_cols=42  Identities=21%  Similarity=0.479  Sum_probs=36.9

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      +.++.+.+.+|.+|++|||+++.++.  .|||||+|++|+..|+
T Consensus        33 ivRaq~QYmfDE~g~~yLDCInNVaH--vghchp~VV~A~~kQm   74 (452)
T KOG1403|consen   33 IVRAQGQYMFDEEGTRYLDCINNVAH--VGHCHPEVVRAGAKQM   74 (452)
T ss_pred             hehhccceeeccCcccHHHHhhhhhh--cccCCHHHHHHHHHHH
Confidence            45899999999999999999997654  5999999999998754

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=96.11  E-value=0.015  Score=53.44  Aligned_cols=49  Identities=20%  Similarity=0.253  Sum_probs=41.6

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCC-hHHHHHHhhcccccc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYN-HPALLKIFDDPATVK  132 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~-hP~V~~Ai~~q~~~~  132 (236)
                      +.+..+.++.|.++++.||+++|||.++   ..||++ +|+|++++.+++.+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~g~~~i~~~~~---~~lg~~~~~~v~~~~~~~~~~~   68 (393)
T TIGR01822        19 KSERIITSPQGADIRVADGREVLNFCAN---NYLGLSSHPDLIQAAKDALDEH   68 (393)
T ss_pred             CcccccccCCCceEEecCCceEEEeeCC---CccccCCCHHHHHHHHHHHHHh
Confidence            3566788999999999999999999888   346777 999999999988763

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=96.05  E-value=0.014  Score=54.27  Aligned_cols=92  Identities=13%  Similarity=0.074  Sum_probs=52.4

Q ss_pred             eecccccEEEe-----CCCCEEEeccCCcccccCCC-ChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           86 YQKSFGNYLVD-----VDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        86 i~~a~G~~l~D-----~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      +.+..|.++..     .+|+++|+|.+.-   =||- +||+|++|+++|+++..+....+....-.....+.+++.+...
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~sn~---ylgl~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~  102 (406)
T PRK13393         26 LERQAGAFPRATHHGPDGPREVTVWCSND---YLGMGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADL  102 (406)
T ss_pred             ccccCCCcceeEEeccCCCccEEEeeccc---ccCCCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHH
Confidence            44555644332     2468999987752   2677 7999999999999987543211100000112334444444444


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+. +     ...+.++|++++..++.
T Consensus       103 ~g~-~-----~~~~~~SG~~An~~ai~  123 (406)
T PRK13393        103 HGK-E-----AALLFTSGYVSNWAALS  123 (406)
T ss_pred             hCC-C-----cEEEeCCcHHHHHHHHH
Confidence            442 2     25566778887776554

>PRK09064 5-aminolevulinate synthase; Validated

Probab=93.76  E-value=0.13  Score=47.69  Aligned_cols=33  Identities=12%  Similarity=0.126  Sum_probs=26.7

Q ss_pred             CCEEEeccCCcccccCCCC-hHHHHHHhhcccccccc
Q psy237           99 GNHILDVYTQISSVPLGYN-HPALLKIFDDPATVKTF  134 (236)
Q Consensus        99 G~~yLD~~~g~~~~~lGh~-hP~V~~Ai~~q~~~~~~  134 (236)
                      |+++|||.+.   .-||++ ||+|++|+.+++++..+
T Consensus        45 ~~~~~~~~s~---dylgl~~~p~v~~a~~~~~~~~~~   78 (407)
T PRK09064         45 EREVTVWCSN---DYLGMGQHPKVIEAMIEALDRCGA   78 (407)
T ss_pred             CceEEEEECC---CCcCCCCCHHHHHHHHHHHHHcCC
Confidence            6999997764   237887 99999999999987654

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=91.38  E-value=0.3  Score=45.17  Aligned_cols=36  Identities=11%  Similarity=0.208  Sum_probs=26.9

Q ss_pred             CCCCEEEeccCCcccccCCCChHHHHHHhhcccccccc
Q psy237           97 VDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTF  134 (236)
Q Consensus        97 ~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~  134 (236)
                      .+|+++++|.+. ..+.|+ +||+|++|+++|+++..+
T Consensus        42 ~~~~~~~~~~sn-~ylgl~-~~p~v~~a~~~~~~~~~~   77 (402)
T TIGR01821        42 DGAKDVTVWCSN-DYLGMG-QHPEVLQAMHETLDKYGA   77 (402)
T ss_pred             CCCeeEEEeEcc-CcCCCC-CCHHHHHHHHHHHHHcCC
Confidence            356999997664 344454 499999999999998654

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=88.87  E-value=0.34  Score=43.95  Aligned_cols=38  Identities=29%  Similarity=0.488  Sum_probs=33.2

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCC-CCHHHHHhhhc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDD  210 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh-~~p~i~~A~~~  210 (236)
                      +.++.|.++++ +|+.|||+.++.   ++|| .+|+|++|+.+
T Consensus        26 ~~~~~g~~~~~-~g~~~id~~~~~---~~g~~~~~~v~~a~~~   64 (385)
T PRK05958         26 REGGAGRWLVV-DGRRMLNFASND---YLGLARHPRLIAAAQQ   64 (385)
T ss_pred             cccCCCceeEe-CCceEEEeeCCC---cccCCCCHHHHHHHHH
Confidence            35899999997 999999999973   5898 78999999987

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=83.65  E-value=1.1  Score=41.49  Aligned_cols=34  Identities=12%  Similarity=0.185  Sum_probs=26.2

Q ss_pred             CCCEEEeccCCcccccCCCChHHHHHHhhccccccc
Q psy237           98 DGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKT  133 (236)
Q Consensus        98 dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~  133 (236)
                      ||+++++|.+. ..+.|| +||+|++|+.+++++..
T Consensus        44 ~~~~~~~~~sn-~yl~l~-~~p~v~~a~~~~~~~~~   77 (410)
T PRK13392         44 GPRRVTIWCSN-DYLGMG-QHPDVIGAMVDALDRYG   77 (410)
T ss_pred             CCceEEEEECC-CccCCC-CCHHHHHHHHHHHHHcC
Confidence            57889997773 344555 58999999999998764

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=81.12  E-value=0.86  Score=41.55  Aligned_cols=37  Identities=22%  Similarity=0.486  Sum_probs=32.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCC-CCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh-~~p~i~~A~~~  210 (236)
                      .++.|++++ .+|+.++||.++   ..+|| .+|.+.+++.+
T Consensus        21 ~~~~g~~~~-~~g~~~id~~~~---~~~g~~~~~~~~~a~~~   58 (385)
T TIGR01825        21 ESAQGPRVR-VNGKEVINLSSN---NYLGFADHPRLKEAAAQ   58 (385)
T ss_pred             ccCCCceEE-ECCceEEEeecc---CccCCCCCHHHHHHHHH
Confidence            478999999 999999999874   44899 89999999987

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	236
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		5e-24
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		2e-14

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score =  107 bits (267), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 69/105 (65%)
Query: 53  PQLVTEVPGPQTKAXXXXXXXXXXXXXXXXFVDYQKSFGNYLVDVDGNHILDVYTQISSV 112
           P + TEVPGP+++                 F +Y++S GNYLVDVDGN +LD+Y+QISS+
Sbjct: 16  PLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSI 75
Query: 113 PLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL 157
           P+GY+HPAL+K+   P  V TF+NRPALG+ P  ++ + L   LL
Sbjct: 76  PIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLL 120

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 47/59 (79%)
Query: 156 LLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV 214
           +++ + +V  F +Y++S GNYLVDVDGN +LD+Y+QISS+P+GY+HPAL+K+   P  V
Sbjct: 36  IIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNV 94

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	236
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	3e-40
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	9e-18
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	7e-23
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	3e-15
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	2e-09
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	4e-09
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	4e-05
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-04
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	4e-04
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	5e-04

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  142 bits (361), Expect = 3e-40
 Identities = 53/110 (48%), Positives = 80/110 (72%)

Query: 49  EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
           +   P + TEVPGP+++ L ++L+ +Q + +V  F +Y++S GNYLVDVDGN +LD+Y+Q
Sbjct: 12  DYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQ 71

Query: 109 ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK 158
           ISS+P+GY+HPAL+K+   P  V TF+NRPALG+ P  ++ + L   LL 
Sbjct: 72  ISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLS 121

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score = 80.4 bits (199), Expect = 9e-18
 Identities = 30/54 (55%), Positives = 43/54 (79%)

Query: 159 QSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA 212
            + +V  F +Y++S GNYLVDVDGN +LD+Y+QISS+P+GY+HPAL+K+   P 
Sbjct: 39  NAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQ 92

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score = 95.0 bits (237), Expect = 7e-23
 Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 4/110 (3%)

Query: 57  TEVPGPQTKA--LKQKLSQLQQSGSVSLFVDYQKSFGNYLVD-VDGNHILDVYTQISSVP 113
             + G  T    + + L +      + + +D  +S G+YLVD + G   LD++T ++S  
Sbjct: 8   VALAGRPTTPDRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSA 67

Query: 114 LGYNHPALLK-IFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGS 162
           LG N PAL+         ++  +N+P+     S    + +E         
Sbjct: 68  LGMNPPALVDDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDP 117

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score = 73.1 bits (180), Expect = 3e-15
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 135 VNRPALGVFPSG--DWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVD-VDGNHILDVYTQ 191
           V   AL   P+      ++L   +L       + +D  +S G+YLVD + G   LD++T 
Sbjct: 5   VKSVALAGRPTTPDRVHEVLGRSMLVDGLD--IVLDLTRSGGSYLVDAITGRRYLDMFTF 62

Query: 192 ISSVPLGYNHPALLKIFDDPATVKCSDDKTSHI 224
           ++S  LG N PAL+         +   +     
Sbjct: 63  VASSALGMNPPALVD------DREFHAELMQAA 89

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 39  SSAQPAAALSEPSHPQLVTEVPGPQTKALKQKLSQLQQSG---SVSLFVDYQKSFGNYLV 95
             +             +VT +PGP++ AL ++      +G   +  ++     + G  +V
Sbjct: 2   PGSMTDITYRLAQKRTIVTPLPGPRSGALAERRRAAVSAGVGSTAPVYAV--DADGGVIV 59

Query: 96  DVDGNHILDVYTQISSVPLGYNHPALLK 123
           D DGN  +D+   I+   +G +HPA+  
Sbjct: 60  DADGNSFIDLGAGIAVTTVGASHPAVAA 87

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score = 54.9 bits (133), Expect = 4e-09
 Identities = 20/86 (23%), Positives = 44/86 (51%), Gaps = 8/86 (9%)

Query: 43  PAAALSEPSH-PQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDY----QKSFGNYLVDV 97
           P + +S P     L T +PGP+++AL   + +   + +  +         ++ G  + DV
Sbjct: 2   PGSMVSHPEQSRHLATAIPGPRSQAL---IDRKGTAVARGVGTTMPVYAVRAGGGIVEDV 58

Query: 98  DGNHILDVYTQISSVPLGYNHPALLK 123
           DGN ++D+ + I+   +G + P +++
Sbjct: 59  DGNRLIDLGSGIAVTTVGNSAPKVVE 84

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFARTEP 232
           G+++ D DG  ILD  +   S  LG+ HP ++      + +     K  H+ +   + P
Sbjct: 34  GSFVYDADGRAILDFTSGQMSAVLGHCHPEIV------SVIGEYAGKLDHLFSEMLSRP 86

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
           G+++ D DG  ILD  +   S  LG+ HP ++ 
Sbjct: 34  GSFVYDADGRAILDFTSGQMSAVLGHCHPEIVS 66

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 7/68 (10%)

Query: 61  GPQT-KALKQK----LSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLG 115
           G    KAL  +    +  LQ+     L +      G  L++ +G  ++D+     +  LG
Sbjct: 1   GSHMTKALYDRDGAAIGNLQKLRFFPLAIS--GGRGARLIEENGRELIDLSGAWGAASLG 58

Query: 116 YNHPALLK 123
           Y HPA++ 
Sbjct: 59  YGHPAIVA 66

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
           G  L++ +G  ++D+     +  LGY HPA++ 
Sbjct: 34  GARLIEENGRELIDLSGAWGAASLGYGHPAIVA 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	236
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.92
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.84
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.78
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.77
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.76
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.75
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.48
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.6
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.6
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.57
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.57
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.56
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.55
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.55
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.52
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.51
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.5
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.48
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.47
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.46
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.43
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.38
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.37
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.36
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.36
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.31
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.3
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.27
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.26
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.24
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.22
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.21
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.07
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.05
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.04
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.01
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	98.93
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	98.79
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	98.76
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	98.74
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	98.74
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	98.57
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	98.36
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	98.34
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.3
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	98.3
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	98.25
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	98.18
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	97.48
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	98.17
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	98.13
3hmu_A	472	Aminotransferase, class III; structural genomics,	98.13
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.1
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	98.08
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.07
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	98.05
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	98.05
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	98.01
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	97.98
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	97.96
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	97.92
1z7d_A	433	Ornithine aminotransferase; structural genomics co	97.9
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	97.84
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	97.83
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	97.8
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	97.78
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	97.75
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	97.67
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	97.63
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	97.56
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	97.53
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	97.52
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	97.49
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	97.46
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	97.46
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	97.28
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	97.26
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	97.26
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	97.25
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	97.18
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	97.1
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	96.86
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	96.78
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	95.78
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	96.72
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	96.68
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	96.45
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	96.45
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	96.34
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	95.64
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	95.63
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	95.62
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	95.58
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	92.48
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	92.16
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	91.14
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	90.08
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	90.05
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	89.11
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	88.66
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	88.07
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	85.28
3nra_A	407	Aspartate aminotransferase; structural genomics, j	82.16

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.92  E-value=2.3e-26  Score=216.20  Aligned_cols=151  Identities=17%  Similarity=0.162  Sum_probs=118.4

Q ss_pred             CCCCCCCcccccCCChhHHHHHHHHhccccC-CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHh
Q psy237           47 LSEPSHPQLVTEVPGPQTKALKQKLSQLQQS-GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIF  125 (236)
Q Consensus        47 ~~~~~~~~v~~~~pgp~s~~l~~~~~~~~~~-~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai  125 (236)
                      ..++..+++.+.+|||+|++|++++++++++ ...++|++++||+|+||||+|||+||||++|+|+++|||+||+|++|+
T Consensus        10 ~~~~~~~~i~t~iPGP~s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai   89 (456)
T 4atq_A           10 YRIEQKRNINGAFPGPKSQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAV   89 (456)
T ss_dssp             CSSCCSCBCCSSSSCHHHHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHH
T ss_pred             ccCCCCCeecCCCCChHHHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHH
Confidence            3456778899999999999999999999876 456789999999999999999999999999999999999999999999


Q ss_pred             hccccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh--------hhhcccccccc
Q psy237          126 DDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL--------DVYTQISSVPL  197 (236)
Q Consensus       126 ~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l--------D~~sg~~~~~l  197 (236)
                      ++|++++.|......++++..+++++|.+    ..|...   ..+++|.++|+||+|.+++        +-+..+....|
T Consensus        90 ~~q~~~~~~~~~~~~~~~~~~~lae~L~~----~~p~~~---~~~v~f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yH  162 (456)
T 4atq_A           90 QEAAAHFTHTCFMVTPYEGYVAVTEQLNR----LTPGDH---AKRTVLFNSGAEAVENAVKVARLATGRDAVVAFDHAYH  162 (456)
T ss_dssp             HHHHHHCSCCTTTTSCCHHHHHHHHHHHH----HSSCSS---CEEEEEESSHHHHHHHHHHHHHHHHCCCEEEEETTCCC
T ss_pred             HHHHhhccCcccCccCcHHHHHHHHHHHH----hCCCCC---CcEEEEeCChHHHHHHHHHHHhhhhcCCeEEEEecccC
Confidence            99999988765444444444455555554    466432   1257889999999999886        22233555667


Q ss_pred             CCCCHHH
Q psy237          198 GYNHPAL  204 (236)
Q Consensus       198 Gh~~p~i  204 (236)
                      |+..-.+
T Consensus       163 G~t~~al  169 (456)
T 4atq_A          163 GRTNLTM  169 (456)
T ss_dssp             CSSHHHH
T ss_pred             Ccccccc
Confidence            7665433

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.84  E-value=4.7e-22  Score=186.92  Aligned_cols=114  Identities=12%  Similarity=0.117  Sum_probs=94.2

Q ss_pred             ChhHHHHHHHHhccccC-------CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccc
Q psy237           61 GPQTKALKQKLSQLQQS-------GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKT  133 (236)
Q Consensus        61 gp~s~~l~~~~~~~~~~-------~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~  133 (236)
                      .|+|+++++++++++++       .+.++|+++++|+|+||||+|||+||||++|+|+++|||+||+|++|+++|+++..
T Consensus        41 ~p~s~~~~~~a~~~~pgg~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~  120 (454)
T 4ao9_A           41 NPASQRQFEAQARYMPGANSRSVLFYAPFPLTIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI  120 (454)
T ss_dssp             CHHHHHHHHHHTTTSGGGCSSGGGCCSSCCCEEEEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS
T ss_pred             CcHhHHHHHHHhhhCCCCCCCCccccCCCCccEEEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC
Confidence            47899999999999986       35678999999999999999999999999999999999999999999999999876


Q ss_pred             cccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          134 FVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       134 ~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +...   .+....+++++|.+    ..|+..     ++.|.++|+||++.+++
T Consensus       121 ~~~~---~~~~~~~lae~l~~----~~p~~~-----~v~f~~SGsEA~e~Aik  161 (454)
T 4ao9_A          121 NLTG---HNLLEGRLARLICE----RFPQIE-----QLRFTNSGTEANLMALT  161 (454)
T ss_dssp             CCCS---EESSHHHHHHHHHH----HSTTCS-----EEEEESSHHHHHHHHHH
T ss_pred             CccC---CcHHHHHHHHHHHH----hCCCCC-----EEEEeCchHHHHHHHHH
Confidence            5432   23344444554444    456543     58899999999999876

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.78  E-value=9.1e-20  Score=170.72  Aligned_cols=136  Identities=40%  Similarity=0.687  Sum_probs=109.8

Q ss_pred             CCCCCCCcccccCCChhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhh
Q psy237           47 LSEPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFD  126 (236)
Q Consensus        47 ~~~~~~~~v~~~~pgp~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~  126 (236)
                      +.++.++.+++.+|++++++++++..+++......++.++++|+|+||||+|||+||||++|+++++|||+||+|++|++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~   89 (472)
T 1ohv_A           10 EFDYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQ   89 (472)
T ss_dssp             -CCCSSCBCCSCSSCHHHHHHHHHHHHHSCCTTCCCCBCGGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHH
T ss_pred             CCCcccccccccCCCccHHHHHHHHHhhhccccccCCceEEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHH
Confidence            45778888888899999999999999988776566778899999999999999999999999999999999999999999


Q ss_pred             ccccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          127 DPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       127 ~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +|+....+.+...+++.+..++++++++.|....+...   + ++.++++|+||++.+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~l~~~la~~l~~~~~~~~---~-~v~f~~sGseA~~~Aik  145 (472)
T 1ohv_A           90 QPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGM---S-QLITMACGSCSNENAFK  145 (472)
T ss_dssp             CGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTC---C-EEEEESSHHHHHHHHHH
T ss_pred             HHHhhcccccccccccccHHHHHHHHHHHHHHhCCCCc---C-EEEEeCCchhHHHHHHH
Confidence            99876433333234455567888888876655554221   2 58899999999998775

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.77  E-value=3.4e-20  Score=175.03  Aligned_cols=112  Identities=15%  Similarity=0.081  Sum_probs=85.9

Q ss_pred             HHHHHhccccCCc-------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-
Q psy237           67 LKQKLSQLQQSGS-------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-  138 (236)
Q Consensus        67 l~~~~~~~~~~~~-------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-  138 (236)
                      +.++.+++....+       ...|++|+||+|+||||+|||+||||++|+|++++||+||+|++|+++|++++.+.+.. 
T Consensus        27 ~~~~~~~~~~h~~t~~~~~~~~~P~vi~rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~~~  106 (473)
T 4e3q_A           27 WEARAETYSLYGFTDMPSLHQRGTVVVTHGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFF  106 (473)
T ss_dssp             HHHHHHHHBCCSSCCHHHHHHHCCEEEEEEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCCCT
T ss_pred             HHHHHhhhcCCCCCChhhhccCCCEEEEeeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccccc
Confidence            5566666654322       23489999999999999999999999999999999999999999999999998765432 


Q ss_pred             CCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          139 ALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       139 ~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ...+++..+++++|.+    ..|...   + +++|.++|+||+|.+++
T Consensus       107 ~~~~~~~~~lAe~L~~----~~p~~~---~-~v~f~~sGsEA~e~AiK  146 (473)
T 4e3q_A          107 GRMSDQTVMLSEKLVE----VSPFDS---G-RVFYTNSGSEANDTMVK  146 (473)
T ss_dssp             TEEEHHHHHHHHHHHH----HSSCSS---C-EEEEESSHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHh----hCCCCc---c-EEEEeCchHHHHHHHHH
Confidence            2234444455555554    456321   2 68999999999999886

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.76  E-value=2e-19  Score=166.81  Aligned_cols=131  Identities=18%  Similarity=0.183  Sum_probs=101.3

Q ss_pred             CCCCCcccccCCChhHHHHHHHHhccccCC-ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhc
Q psy237           49 EPSHPQLVTEVPGPQTKALKQKLSQLQQSG-SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  127 (236)
Q Consensus        49 ~~~~~~v~~~~pgp~s~~l~~~~~~~~~~~-~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~  127 (236)
                      .+..+++.+.+|+|+|++++++.++++... ..++|+++++|+|+||||.||++||||.+++++++|||+||+|++|+++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~   88 (451)
T 3oks_A            9 PEQSRHLATAIPGPRSQALIDRKGTAVARGVGTTMPVYAVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRS   88 (451)
T ss_dssp             CCSSCBCSSCSSCHHHHHHHHHHHHHBCTTBCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred             CCcccccccCCCCCcHHHHHHHHHhhccCCcCCCCCceEEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHH
Confidence            344555778899999999999999988763 4578999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          128 PATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       128 q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |++++.+.....+.++...+++++    +....+...   ..++.++++|+|+++.+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~la~~----l~~~~~~~~---~~~v~~~~sGseA~~~Alk  140 (451)
T 3oks_A           89 QVGDFTHTCFMVTPYEGYVAVCEQ----LNRLTPVRG---DKRSALFNSGSEAVENAVK  140 (451)
T ss_dssp             HHTTCSCCTTTTSCCHHHHHHHHH----HHHHSSCCS---SEEEEEESSHHHHHHHHHH
T ss_pred             HHHhcccccCCccCCHHHHHHHHH----HHHhCCcCC---CCEEEEeCcHHHHHHHHHH
Confidence            999876544222323233344444    444454221   1258889999999998774

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.75  E-value=3.4e-19  Score=165.57  Aligned_cols=131  Identities=23%  Similarity=0.204  Sum_probs=101.6

Q ss_pred             CCCCCcccccCCChhHHHHHHHHhccccC-CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhc
Q psy237           49 EPSHPQLVTEVPGPQTKALKQKLSQLQQS-GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  127 (236)
Q Consensus        49 ~~~~~~v~~~~pgp~s~~l~~~~~~~~~~-~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~  127 (236)
                      .+..+++.+.+|+|+|++++++.++++.. ...++|+++++|+|+||||.|||+||||.+++++++|||+||+|++|+++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~   91 (453)
T 4ffc_A           12 LAQKRTIVTPLPGPRSGALAERRRAAVSAGVGSTAPVYAVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIAD   91 (453)
T ss_dssp             SCCCCBCCSCSSCHHHHHHHHHHHHHBCTTTCCSCSSCEEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHH
T ss_pred             cCCCcccccCCCCCCHHHHHHHHHHhcCCCcCCCCCceEEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHH
Confidence            44556677889999999999999998876 44578999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          128 PATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       128 q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      |++++.+.....+.++...+++++    +....+...   ..++.++++|+|+++.+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~la~~----l~~~~~~~~---~~~v~~~~sGseA~~~alk  143 (453)
T 4ffc_A           92 QATHFTHTCFMVTPYEQYVQVAEL----LNALTPGDH---DKRTALFNSGAEAVENAIK  143 (453)
T ss_dssp             HHHHCSCCTTTTSCCHHHHHHHHH----HHHHSSCSS---CEEEEEESSHHHHHHHHHH
T ss_pred             HHHhccccccCcCCCHHHHHHHHH----HHHhCCCCC---CcEEEEeCcHHHHHHHHHH
Confidence            999876543222223233344444    444454211   1258889999999998774

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.48  E-value=5e-18  Score=159.83  Aligned_cols=114  Identities=12%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             ChhHHHHHHHHhccccCC-------ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccc
Q psy237           61 GPQTKALKQKLSQLQQSG-------SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKT  133 (236)
Q Consensus        61 gp~s~~l~~~~~~~~~~~-------~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~  133 (236)
                      .++|+++++++++++++.       +.++|+++++|+|+||||+|||+||||++|+++++|||+||+|++|+++|+++..
T Consensus        54 ~~~s~~l~~~~~~~~~~g~~~~~~~~~~~p~~~~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~  133 (465)
T 2yky_A           54 NPVSAGHHERARRSMPGGNTRSILFHRPFPLVIAQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGL  133 (465)
Confidence            467889999999998851       3457999999999999999999999999999999999999999999999998853


Q ss_pred             cccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          134 FVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       134 ~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..   .+.++...+++++|.+    ..|+.+     ++.++++|+|+++.+++
T Consensus       134 ~~---~~~~~~~~~Lae~L~~----~~p~~~-----~v~~~nSGseA~~~Aik  174 (465)
T 2yky_A          134 NL---STQTENEALFAEAVCD----RFPSID-----LVRFTNSGTEANLMALA  174 (465)
Confidence            21   3456677777777776    233322     47889999999998764

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.60  E-value=8.8e-17  Score=149.86  Aligned_cols=120  Identities=18%  Similarity=0.097  Sum_probs=88.6

Q ss_pred             CCChhHHHHHHHHhccccCCccc------cceeeecccccEEEeC-CCC--EEEeccCCcccccCCCChHHHHHHhhccc
Q psy237           59 VPGPQTKALKQKLSQLQQSGSVS------LFVDYQKSFGNYLVDV-DGN--HILDVYTQISSVPLGYNHPALLKIFDDPA  129 (236)
Q Consensus        59 ~pgp~s~~l~~~~~~~~~~~~~~------~p~~i~~a~G~~l~D~-dG~--~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~  129 (236)
                      .++..+++++++.++++...+..      .|+++++|+|+||||. |||  +||||.+|+++++|||+||+|++|+++|+
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~  104 (457)
T 3tfu_A           25 TGGLTPEQIIAVDGAHLWHPYSSIGREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQL  104 (457)
T ss_dssp             --CCCHHHHHHHHHHHBCCTTCCSSCCSSCCEEEEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhhcCcccccccccCCCCceEEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHH
Confidence            34455677888887776554433      3899999999999999 999  99999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          130 TVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       130 ~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +++.+.....+.++...+++++    +...++...   + ++.++++|+|+++.+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~L~e~----la~~~~~~~---~-~v~~~~sGseA~~~Alk  153 (457)
T 3tfu_A          105 RVMNHVMFGGLTHEPAARLAKL----LVDITPAGL---D-TVFFSDSGSVSVEVAAK  153 (457)
T ss_dssp             HHCSCCCSSSEECHHHHHHHHH----HHHHSSTTE---E-EEEEESSHHHHHHHHHH
T ss_pred             HhccCccccccCCHHHHHHHHH----HHHhCCCCc---C-EEEEeCcHHHHHHHHHH
Confidence            9876644222333333344444    444455221   2 58899999999998665

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.60  E-value=2.2e-16  Score=144.64  Aligned_cols=113  Identities=13%  Similarity=0.077  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHhccccCC-------c---cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           62 PQTKALKQKLSQLQQSG-------S---VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~-------~---~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      |+|+++++++++++++.       +   .++|+++++|+|++|||.|||+||||.+++++++|||+||+|++|+++|+++
T Consensus         5 ~~s~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~   84 (429)
T 3k28_A            5 DKSIAAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAER   84 (429)
T ss_dssp             HHHHHHHHHHTTTSGGGSSSGGGGCGGGTCCCCCEEEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhh
Confidence            68999999999998862       1   3578999999999999999999999999999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.+.   .+.++...++++++.+    ..++.+     ++.++++|+|+++.+++
T Consensus        85 ~~~~---~~~~~~~~~l~~~la~----~~~~~~-----~v~~~~~Gsea~~~ai~  127 (429)
T 3k28_A           85 GTSF---GAPTEIENKLAKLVIE----RVPSIE-----IVRMVNSGTEATMSALR  127 (429)
T ss_dssp             CSCC---SSCCHHHHHHHHHHHH----HSTTCS-----EEEEESSHHHHHHHHHH
T ss_pred             CcCc---CCCCHHHHHHHHHHHH----hCCCCC-----EEEEeCChHHHHHHHHH
Confidence            5431   2333333344444444    444322     47889999999987664

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.57  E-value=2.6e-16  Score=147.37  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=83.7

Q ss_pred             HHHHHHHHhccccC-Cc------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccccccc
Q psy237           64 TKALKQKLSQLQQS-GS------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVN  136 (236)
Q Consensus        64 s~~l~~~~~~~~~~-~~------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~  136 (236)
                      ++++.++.++++.. +.      ...|+++++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.+..
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~   91 (472)
T 3hmu_A           12 TAELQALDAAHHLHPFSANNALGEEGTRVITRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYN   91 (472)
T ss_dssp             HHHHHHHHHHHEECTTEEHHHHHHHCCEEEEEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCC
T ss_pred             HHHHHHHHHhhccCCcccccccccCCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccccc
Confidence            45566666666443 21      236899999999999999999999999999999999999999999999999876322


Q ss_pred             C-CCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          137 R-PALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       137 ~-~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      . ..+.++...+++++|.+    ..|...   + ++.++++|+|+++.+++
T Consensus        92 ~~~~~~~~~~~~lae~l~~----~~~~~~---~-~v~~~~sGseA~~~aik  134 (472)
T 3hmu_A           92 TFFKTTHVPAIALAQKLAE----LAPGDL---N-HVFFAGGGSEANDTNIR  134 (472)
T ss_dssp             SSSSEECHHHHHHHHHHHH----HSCTTE---E-EEEEESSHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHH----hCCCCC---C-EEEEeCCHHHHHHHHHH
Confidence            1 12223333344444444    455321   2 58899999999998765

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.57  E-value=1.4e-15  Score=139.01  Aligned_cols=112  Identities=18%  Similarity=0.180  Sum_probs=87.3

Q ss_pred             hHHHHHHHHhccccCCc----------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           63 QTKALKQKLSQLQQSGS----------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~~----------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      +|++++++.++++++..          .++|+++++|+|++|||.||++||||.+++++++|||+||+|++|+++|+++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~   85 (429)
T 4e77_A            6 KSENLYAQAQQLIPGGVNSPVRAFTGVGGIPLFIERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERG   85 (429)
T ss_dssp             HHHHHHHHHHHHSGGGCSSGGGGTTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHhhcCCCcCcccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhC
Confidence            68899999999987621          23689999999999999999999999999999999999999999999999876


Q ss_pred             ccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          133 TFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       133 ~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+.   .+.++    ....+++.+....++..     ++.++++|+|+++.+++
T Consensus        86 ~~~---~~~~~----~~~~la~~l~~~~~~~~-----~v~~~~sGsea~~~al~  127 (429)
T 4e77_A           86 LSF---GAPTE----MEVKMAQLVTDLVPTMD-----MVRMVNSGTEATMSAIR  127 (429)
T ss_dssp             SCC---SSCCH----HHHHHHHHHHHHSTTCS-----EEEEESSHHHHHHHHHH
T ss_pred             ccc---CCCCH----HHHHHHHHHHhhCCCCC-----EEEEeCcHHHHHHHHHH
Confidence            432   22232    33344443444455322     57889999999998776

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.56  E-value=1.7e-15  Score=138.58  Aligned_cols=114  Identities=18%  Similarity=0.210  Sum_probs=88.2

Q ss_pred             ChhHHHHHHHHhccccCCc-----------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccc
Q psy237           61 GPQTKALKQKLSQLQQSGS-----------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  129 (236)
Q Consensus        61 gp~s~~l~~~~~~~~~~~~-----------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~  129 (236)
                      -|+|++++++..+++++..           .++|+++++|+|+++||.|||+||||.+++++++|||+||+|++|+++|+
T Consensus         5 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~   84 (434)
T 3l44_A            5 FTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPIAMERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAA   84 (434)
T ss_dssp             CHHHHHHHHHHHHHBGGGCSSGGGSSGGGTCSCCCCEEEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhhCCCCcCccccccccccCCCCceEEEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHH
Confidence            3789999999999988621           15789999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          130 TVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       130 ~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ++...   ..+.++...++++++.    ...++..     ++.++++|+|+++.+++
T Consensus        85 ~~~~~---~~~~~~~~~~l~~~la----~~~~~~~-----~v~~~~sGsea~~~ai~  129 (434)
T 3l44_A           85 ENGVL---YGTPTALEVKFAKMLK----EAMPALD-----KVRFVNSGTEAVMTTIR  129 (434)
T ss_dssp             HHCSC---CSSCCHHHHHHHHHHH----HHCTTCS-----EEEEESSHHHHHHHHHH
T ss_pred             HhCcC---CCCCCHHHHHHHHHHH----HhCCCCC-----EEEEeCchHHHHHHHHH
Confidence            87432   1222333334444444    3444322     47889999999988664

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.55  E-value=2.6e-15  Score=137.03  Aligned_cols=112  Identities=15%  Similarity=0.158  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHhccccCCc----------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           62 PQTKALKQKLSQLQQSGS----------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~~----------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ++|+++++++++++++..          .++|+++++|+|++|||.||++||||.+|++++++||+||+|++|+++|+++
T Consensus         4 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~   83 (427)
T 3fq8_A            4 IKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK   83 (427)
T ss_dssp             HHHHHHHHHHTTTSGGGSSSGGGGCTTTTSCCCCEEEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHhhcCCCcccccccccccCCCCceEEEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHHHHHh
Confidence            678999999999988621          2578999999999999999999999999999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccch
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHI  185 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~  185 (236)
                      +.+..   +    ..+..+.+++.+....+...     ++.++++|+|+++.++
T Consensus        84 ~~~~~---~----~~~~~~~la~~l~~~~~~~~-----~v~~~~ggsea~~~al  125 (427)
T 3fq8_A           84 GTSFG---A----PCALENVLAEMVNDAVPSIE-----MVRFVNSGTEACMAVL  125 (427)
T ss_dssp             CSCCS---S----CCHHHHHHHHHHHHHSTTCS-----EEEEESSHHHHHHHHH
T ss_pred             CCCcC---C----CCHHHHHHHHHHHHhCCCCC-----EEEEeCCHHHHHHHHH
Confidence            65421   1    22334444444444454322     4788999999998877

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.55  E-value=2e-16  Score=158.18  Aligned_cols=98  Identities=12%  Similarity=-0.015  Sum_probs=80.7

Q ss_pred             cceeeecccc--cEEEeCCCC----EEEeccCCcccccCCCC-hHHHHHHhhccccccccccCCCCCCCCCCChhhhhHh
Q psy237           82 LFVDYQKSFG--NYLVDVDGN----HILDVYTQISSVPLGYN-HPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLEN  154 (236)
Q Consensus        82 ~p~~i~~a~G--~~l~D~dG~----~yLD~~~g~~~~~lGh~-hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae  154 (236)
                      .|++|++|+|  +||||.|||    +|||+++|+|++++||+ ||+|++|+++|++++.|+....+.+++..+++++|.+
T Consensus       356 ~p~~i~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~  435 (831)
T 4a0g_A          356 TVTVIDSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLD  435 (831)
T ss_dssp             GCEEEEEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHHHHHHHHHH
T ss_pred             CCeEEEEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHHHHHHHHHH
Confidence            4789999999  599999999    99999999999999999 9999999999999998876445556666666666665


Q ss_pred             hhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          155 VLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       155 ~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                          ..|...   ..+++|.++|+||+|.+++
T Consensus       436 ----~~p~~~---l~~vff~~SGSeA~E~AlK  460 (831)
T 4a0g_A          436 ----GVGKGW---ASRVYFSDNGSTAIEIALK  460 (831)
T ss_dssp             ----TTTTTT---CCEEEEESSHHHHHHHHHH
T ss_pred             ----hCCCCC---CCEEEECCChhHHHHHHHH
Confidence                455321   1268999999999999876

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.52  E-value=1.4e-15  Score=142.51  Aligned_cols=98  Identities=12%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhcc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      ..|+++++|+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.+.+...+.+    +..+.|++.+....
T Consensus        35 ~~p~~~~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~~~~----~~~~~la~~l~~~~  110 (476)
T 3i5t_A           35 SAQPVLTHAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMAT----SPAARLAEKIATLT  110 (476)
T ss_dssp             CCCCBEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCBC----HHHHHHHHHHHTTS
T ss_pred             CCCeeEEEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCccCC----HHHHHHHHHHHhcC
Confidence            36899999999999999999999999999999999999999999999999876544322333    33444444444455


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +...   + ++.++++|+|+++.+++
T Consensus       111 ~~~~---~-~v~~~~sGseA~~~Aik  132 (476)
T 3i5t_A          111 PGDL---N-RIFFTTGGSTAVDSALR  132 (476)
T ss_dssp             STTC---C-EEEEESSHHHHHHHHHH
T ss_pred             CCCc---C-EEEEeCchHHHHHHHHH
Confidence            5221   2 58899999999998765

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.51  E-value=2.7e-15  Score=138.30  Aligned_cols=117  Identities=18%  Similarity=0.081  Sum_probs=87.5

Q ss_pred             hhHHHHHHHHhccccC----CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccC
Q psy237           62 PQTKALKQKLSQLQQS----GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNR  137 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~----~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~  137 (236)
                      .+++++.++..+++..    +..+.|+++++|+|+||||.||++||||.+|+++.+|||+||+|++|+++|++++.+ ..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-~~   85 (452)
T 3n5m_A            7 KQTDELLAKDEQYVWHGMRPFSPNSTTVGAKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY-FP   85 (452)
T ss_dssp             HHHHHHHHHHHHHBCCTTSCSCGGGCCEEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC-CC
T ss_pred             ccHHHHHHHhhhhccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC-cc
Confidence            4567788887777554    334678999999999999999999999999999999999999999999999998765 22


Q ss_pred             CCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchhhh
Q psy237          138 PALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDV  188 (236)
Q Consensus       138 ~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~  188 (236)
                      ..+.++...++++++.+    ..+...   +  +.++++|+|+++.+++=.
T Consensus        86 ~~~~~~~~~~la~~l~~----~~~~~~---~--v~~~~ggseA~~~al~~~  127 (452)
T 3n5m_A           86 MSQSHEPAIKLAEKLNE----WLGGEY---V--IFFSNSGSEANETAFKIA  127 (452)
T ss_dssp             TTSEEHHHHHHHHHHHH----HHTSCE---E--EEEESSHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHH----hCCCCc---e--EEEeCchHHHHHHHHHHH
Confidence            22333333344444444    444322   2  788899999999876533

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.50  E-value=8e-15  Score=135.54  Aligned_cols=116  Identities=18%  Similarity=0.212  Sum_probs=89.2

Q ss_pred             CChhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCC
Q psy237           60 PGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPA  139 (236)
Q Consensus        60 pgp~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~  139 (236)
                      +++++++++++..+++...+.++|+++++|+|++|||.||++||||.+|++++++||+||+|++|+++|++++.+.+. .
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~-~  114 (439)
T 2oat_A           36 GPPTSDDIFEREYKYGAHNYHPLPVALERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSR-A  114 (439)
T ss_dssp             CCCCHHHHHHHHHHHBCCCCCCCSCEEEEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCT-T
T ss_pred             CCCCHHHHHHHHHHhcccccCCCCeeEEeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccC-c
Confidence            356678888888887776666789999999999999999999999999999999999999999999999988765432 2


Q ss_pred             CCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          140 LGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       140 ~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.++...++++.+.+    ..+ .+     .+.++++|+++++.++.
T Consensus       115 ~~~~~~~~l~~~la~----~~g-~~-----~v~~~~sGseA~~~al~  151 (439)
T 2oat_A          115 FYNNVLGEYEEYITK----LFN-YH-----KVLPMNTGVEAGETACK  151 (439)
T ss_dssp             SEESSHHHHHHHHHH----HHT-CS-----EEEEESSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH----hcC-CC-----EEEEeCCHHHHHHHHHH
Confidence            333344445555544    332 22     36788889998876554

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.48  E-value=4.6e-15  Score=136.87  Aligned_cols=113  Identities=10%  Similarity=0.006  Sum_probs=81.6

Q ss_pred             HHHHHHhccccCCc------cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCC
Q psy237           66 ALKQKLSQLQQSGS------VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPA  139 (236)
Q Consensus        66 ~l~~~~~~~~~~~~------~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~  139 (236)
                      ++.++..+++....      ...|+++++|+|+||||.||++||||.+++++.++||+||+|++|+++|++++.+.+...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~   83 (448)
T 3dod_A            4 DLIEKSKKHLWLPFTQMKDYDENPLIIESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG   83 (448)
T ss_dssp             HHHHHHHHHBCCTTCCHHHHHHSCCEEEEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS
T ss_pred             HHHHhhhhcccccccccccccCCCceEEEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc
Confidence            35555555644211      235789999999999999999999999999999999999999999999999876543222


Q ss_pred             CCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          140 LGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       140 ~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.++...+++++    +....+...   + ++.++++|+|+++.+++
T Consensus        84 ~~~~~~~~la~~----l~~~~~~~~---~-~v~~~~sGseA~~~al~  122 (448)
T 3dod_A           84 MTNVPATQLAET----LIDISPKKL---T-RVFYSDSGAEAMEIALK  122 (448)
T ss_dssp             SEEHHHHHHHHH----HHHHSCTTE---E-EEEEESSHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH----HHHhCCCCC---C-EEEEeCchHHHHHHHHH
Confidence            333333344444    444454221   2 57889999999998664

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.47  E-value=2.8e-14  Score=130.61  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=86.6

Q ss_pred             CChhHHHHHHHHhccccCC-------c-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           60 PGPQTKALKQKLSQLQQSG-------S-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        60 pgp~s~~l~~~~~~~~~~~-------~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      |+|+|+++++++++++++.       + .++|+++++|+|+++||.||++||||.++++++++||+||+|++|+.+|+++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~   87 (434)
T 2epj_A            8 SGEKSRMLFERTKELFPGGVNSPVRAAVKPYPFYVKRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR   87 (434)
T ss_dssp             -CHHHHHHHHHHTTTSGGGSSSGGGGGCSSSCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred             CCcchHHHHHHHHhhcCCCcCcccccccCCCCeeEEeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHHHHHh
Confidence            6899999999999998752       1 3458999999999999999999999999999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+.   .+.++...++++++.+    ..++..     .+.++++|+++++.++.
T Consensus        88 ~~~~---~~~~~~~~~l~~~la~----~~~~~~-----~v~~~~sgseA~~~al~  130 (434)
T 2epj_A           88 GWLY---GAPGEAEVLLAEKILG----YVKRGG-----MIRFVNSGTEATMTAIR  130 (434)
T ss_dssp             CSCC---SSCCHHHHHHHHHHHH----HHCTTC-----EEEEESSHHHHHHHHHH
T ss_pred             CCCC---CCCCHHHHHHHHHHHH----hCCCCC-----EEEEeCCHHHHHHHHHH
Confidence            4321   2222223334444443    343222     47788999998887654

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.46  E-value=5.5e-15  Score=136.94  Aligned_cols=98  Identities=18%  Similarity=0.124  Sum_probs=72.1

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      ..|+++++|+|+||||.||++||||.+++++++|||+||+|++|+.+|++++.+.... .+.+    +..+.+++.+...
T Consensus        31 ~~p~~~~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~----~~~~~la~~l~~~  106 (459)
T 4a6r_A           31 AGARVMTRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTH----PAVVELSSLLAEV  106 (459)
T ss_dssp             ---CCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTTSSSCC----HHHHHHHHHHHHH
T ss_pred             cCCeeEEEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccccccCC----HHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999999999999999886532211 2223    3334444434444


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+...   + ++.++++|+|+++.+++
T Consensus       107 ~~~~~---~-~v~~~~ggseA~~~al~  129 (459)
T 4a6r_A          107 TPAGF---D-RVFYTNSGSESVDTMIR  129 (459)
T ss_dssp             SCTTC---C-EEEEESSHHHHHHHHHH
T ss_pred             CCCCC---C-EEEEeCchHHHHHHHHH
Confidence            44221   2 58899999999998665

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.43  E-value=4e-14  Score=130.52  Aligned_cols=113  Identities=19%  Similarity=0.197  Sum_probs=85.8

Q ss_pred             hHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCC
Q psy237           63 QTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGV  142 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~  142 (236)
                      ++++++++..+++...+.++|+++++|+|+++||.||++||||.+|++++++||+||+|++|+++|++++.+.+. .+.+
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~~~-~~~~  106 (433)
T 1z7d_A           28 TPEDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSR-AFFS  106 (433)
T ss_dssp             CHHHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCT-TSEE
T ss_pred             cHHHHHHHHHHhcccccCCCCceEEeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCccC-CcCC
Confidence            467888888887776666789999999999999999999999999999999999999999999999988665432 2222


Q ss_pred             CCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          143 FPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       143 ~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +...++++++.+    ..+ .+     .+.++++|+++++.++.
T Consensus       107 ~~~~~l~~~la~----~~g-~~-----~v~~~~sGseA~~~al~  140 (433)
T 1z7d_A          107 VPLGICERYLTN----LLG-YD-----KVLMMNTGAEANETAYK  140 (433)
T ss_dssp             HHHHHHHHHHHH----HHT-CS-----EEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----hcC-CC-----eEEEeCCHHHHHHHHHH
Confidence            233344444444    332 22     46788889998876553

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.38  E-value=2.4e-13  Score=124.03  Aligned_cols=113  Identities=19%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHhccccCC-------ccc---cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           62 PQTKALKQKLSQLQQSG-------SVS---LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~-------~~~---~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ++|+++++++++++++.       +.+   .|+++++++|+++||.||++||||.+|++++++||+||+|++|+.+|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~   83 (424)
T 2e7u_A            4 PISEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER   83 (424)
T ss_dssp             HHHHHHHHHHHHHSGGGSSSGGGGCTTTCSCCCCEEEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHhcCCCcCCcceeccccCCCCeeEEeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHHHHHh
Confidence            57899999999998752       122   48899999999999999999999999999999999999999999999987


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+.   .+.    .++.+.+++.+....++.+     .+.++++|+++.+.++.
T Consensus        84 ~~~~---~~~----~~~~~~l~~~l~~~~~~~~-----~v~~~~~g~ea~~~al~  126 (424)
T 2e7u_A           84 GLTF---GAP----SPLEVALAKKVKRAYPFVD-----LVRFVNSGTEATMSALR  126 (424)
T ss_dssp             CSCC---SSC----CHHHHHHHHHHHHHCTTCC-----EEEEESSHHHHHHHHHH
T ss_pred             CCCC---CCC----CHHHHHHHHHHHHhCCCCC-----EEEEeCCHHHHHHHHHH
Confidence            4321   122    2333444444444444222     46788899998886554

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.37  E-value=1.4e-13  Score=127.59  Aligned_cols=98  Identities=15%  Similarity=0.190  Sum_probs=73.4

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhc
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      ++|+++++|+|+||||.||++||||.+|+++++|||+||+|++|+++|++++.+.... .+.+    +..+.+++.+...
T Consensus        32 ~~p~~~~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~~~~~----~~~~~la~~l~~~  107 (460)
T 3gju_A           32 SPTRIMAGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGT----EASITLAKMIIDR  107 (460)
T ss_dssp             SCCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCCTTCCC----HHHHHHHHHHHHH
T ss_pred             CCceEEEEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccccccCC----HHHHHHHHHHHhh
Confidence            4568999999999999999999999999999999999999999999999886532221 1222    2334444434444


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+...   + ++.++++|+|+++.+++
T Consensus       108 ~~~~~---~-~v~~~~gGseA~~~al~  130 (460)
T 3gju_A          108 APKGM---S-RVYFGLSGSDANETNIK  130 (460)
T ss_dssp             SCTTE---E-EEEEESSHHHHHHHHHH
T ss_pred             CCCCc---C-EEEEeCchHHHHHHHHH
Confidence            43221   2 57899999999998664

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.36  E-value=1.3e-13  Score=126.21  Aligned_cols=115  Identities=15%  Similarity=0.140  Sum_probs=84.9

Q ss_pred             HHHHHHHHhccccC-CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCC
Q psy237           64 TKALKQKLSQLQQS-GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGV  142 (236)
Q Consensus        64 s~~l~~~~~~~~~~-~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~  142 (236)
                      .++++++.++++++ ....+|+++++|+|+++||.||++||||.+++++++|||+||+|++|+.+|+++..+....... 
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~-   84 (439)
T 3dxv_A            6 KALYDRDGAAIGNLQKLRFFPLAISGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSAS-   84 (439)
T ss_dssp             CCHHHHHHHHBCGGGCCCSSCCEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSCSSSSE-
T ss_pred             HHHHHHHHHHhccCccCCCCCceEEEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCccccccC-
Confidence            46688888888776 3345789999999999999999999999999999999999999999999999876543311122 


Q ss_pred             CCCCChhhhhHhhhhhccC-ceeeeeeeeeeecceEEeccccchh
Q psy237          143 FPSGDWPQLLENVLLKQSG-SVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       143 ~~~~elAE~Lae~Ll~~ap-~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                         .+..+.+++.+....+ +.+    ..+.++++|+++++.++.
T Consensus        85 ---~~~~~~l~~~la~~~~~~~~----~~v~~~~ggsea~~~al~  122 (439)
T 3dxv_A           85 ---NAPAVTLAERLLASFPGEGT----HKIWFGHSGSDANEAAYR  122 (439)
T ss_dssp             ---EHHHHHHHHHHHHTTTCTTT----EEEEEESSHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHhCCCCCC----CEEEEeCCHHHHHHHHHH
Confidence               2334444444444443 220    146788899998877654

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.36  E-value=6.4e-13  Score=122.34  Aligned_cols=114  Identities=16%  Similarity=0.093  Sum_probs=87.7

Q ss_pred             ChhHHHHHHHHhccccCC-------ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccc
Q psy237           61 GPQTKALKQKLSQLQQSG-------SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKT  133 (236)
Q Consensus        61 gp~s~~l~~~~~~~~~~~-------~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~  133 (236)
                      .++|++++++.++++++.       +.++|+++++|+|+++||.||++||||.+++++.++||+||+|++|+.+|+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~~   90 (453)
T 2cy8_A           11 TEGSVFWAQRARSVMPDGVTADTRAFDPHGLFISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHGV   90 (453)
T ss_dssp             CHHHHHHHHHHHHHSCCC------CCSSCCCCEEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTTC
T ss_pred             CchhHHHHHHHHhhcCCCCCccccccCCCCceEEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhCC
Confidence            367899999999998752       3456899999999999999999999999999999999999999999999998743


Q ss_pred             cccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          134 FVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       134 ~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.   .+    ..++.+.+++.+....++.    + .+.++++|+++.+.++.
T Consensus        91 ~~---~~----~~~~~~~la~~l~~~~~~~----~-~v~~~~gg~eA~~~al~  131 (453)
T 2cy8_A           91 QY---AA----SHPLEVRWAERIVAAFPSI----R-KLRFTGSGTETTLLALR  131 (453)
T ss_dssp             SS---CS----SCHHHHHHHHHHHHHCTTC----S-EEEEESCHHHHHHHHHH
T ss_pred             CC---CC----CCHHHHHHHHHHHhhCCCC----C-EEEEeCCHHHHHHHHHH
Confidence            21   12    2344555555444444422    2 47788899998886554

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.31  E-value=5e-13  Score=122.36  Aligned_cols=114  Identities=16%  Similarity=0.128  Sum_probs=72.6

Q ss_pred             hhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCC
Q psy237           62 PQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      +.+.++.++..+++...+..+|+++++|+|+++||.||++||||.+|+++.++||+||+|++|+.+|+++..+.+. .+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~~~-~~~   97 (420)
T 2pb2_A           19 EQTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHTSN-VFT   97 (420)
T ss_dssp             --------------------CCSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT-TSC
T ss_pred             hhHHHHHHHHHHhhhccccCCCceEEeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccccC-ccC
Confidence            3345566666777655555688999999999999999999999999999999999999999999999988655332 222


Q ss_pred             CCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                          .+..+.+++.+....+ .+     .+.++++|+++++.+++
T Consensus        98 ----~~~~~~l~~~la~~~g-~~-----~v~~~~ggteA~~~al~  132 (420)
T 2pb2_A           98 ----NEPALRLGRKLIDATF-AE-----RVLFMNSGTEANETAFK  132 (420)
T ss_dssp             ----CHHHHHHHHHHHHHSS-CS-----EEEEESSHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHhhCC-CC-----eEEEeCCHHHHHHHHHH
Confidence                2344445554444443 22     46788899998877654

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.30  E-value=2.2e-13  Score=126.11  Aligned_cols=112  Identities=22%  Similarity=0.319  Sum_probs=81.3

Q ss_pred             HHHHHHHhccccCCccccceeeecccccEEEe-CCCCEEEeccCCcccccCCCChHHHH-H-Hhhc---cccccccccCC
Q psy237           65 KALKQKLSQLQQSGSVSLFVDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL-K-IFDD---PATVKTFVNRP  138 (236)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D-~dG~~yLD~~~g~~~~~lGh~hP~V~-~-Ai~~---q~~~~~~~~~~  138 (236)
                      ++++++..+++.....++++.+++|+|+|+|| .||++||||.+++++++|||+||+|+ + |+++   |++++.+.+ .
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~~~~-~   96 (449)
T 2cjg_A           18 DRVHEVLGRSMLVDGLDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSN-S   96 (449)
T ss_dssp             GGHHHHHHTTSCCCSCSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCCCCT-T
T ss_pred             HHHHHHHHHhhcccCCCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcCCCC-c
Confidence            45676767765433334555567999999999 99999999999999999999999999 9 9999   888765543 2


Q ss_pred             CCCCCCCCChhhhhHhhhhhccC--ceeeeeeeeeeecceEEeccccchh
Q psy237          139 ALGVFPSGDWPQLLENVLLKQSG--SVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       139 ~~~~~~~~elAE~Lae~Ll~~ap--~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+.++...++++.+.+    ..+  ...     ++.++++|+|+++.+++
T Consensus        97 ~~~~~~~~~la~~la~----~~~~~~~~-----~v~~~~~gseA~~~aik  137 (449)
T 2cjg_A           97 DVYSVAMARFVETFAR----VLGDPALP-----HLFFVEGGALAVENALK  137 (449)
T ss_dssp             TCCCHHHHHHHHHHHH----HHCCTTCC-----EEEEESSHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHH----hcCCCCCC-----EEEEeCchHHHHHHHHH
Confidence            2333333444454444    333  222     58899999999998764

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.27  E-value=1.1e-12  Score=118.17  Aligned_cols=104  Identities=17%  Similarity=0.127  Sum_probs=77.6

Q ss_pred             hccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhh
Q psy237           72 SQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQL  151 (236)
Q Consensus        72 ~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~  151 (236)
                      .+++...+.++|+++++|+|+++||.||++||||.+++++++|||+||+|++|+.+++++..+... .+.    ....+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~----~~~~~~   82 (395)
T 3nx3_A            8 QSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTSN-LYY----NENIAA   82 (395)
T ss_dssp             CCSCBCGGGSCSCBEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCCT-TSB----CHHHHH
T ss_pred             hhhhhhccCCCCceEEeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccccc-ccC----CHHHHH
Confidence            344444556788999999999999999999999999999999999999999999999987655332 122    233444


Q ss_pred             hHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          152 LENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       152 Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +++.+....+ ..     .+.++++|+++++.++.
T Consensus        83 l~~~la~~~~-~~-----~v~~~~gg~ea~~~al~  111 (395)
T 3nx3_A           83 AAKNLAKASA-LE-----RVFFTNSGTESIEGAMK  111 (395)
T ss_dssp             HHHHHHHHHT-CS-----EEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHhcC-CC-----eEEEeCCHHHHHHHHHH
Confidence            4443443343 22     47788999999887654

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.26  E-value=7.3e-13  Score=120.79  Aligned_cols=115  Identities=15%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             hHHHHHHHHhccccCCccc-cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCC
Q psy237           63 QTKALKQKLSQLQQSGSVS-LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~~~~-~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      +|.+++++.++++++.... +|+++++++|+++||.||++|||+.++.++.++||+||+|++|+.+|+++..+.+ ..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~~~~   83 (433)
T 1zod_A            5 DDATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF-SEML   83 (433)
T ss_dssp             TCHHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC-TTCC
T ss_pred             hhHHHHHHHHHhhcccccccCCceEEEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCcccc-cccC
Confidence            4677888888887764444 5889999999999999999999999999999999999999999999998765422 2222


Q ss_pred             CCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +    ...+.+++.+...++...   + .+.++++|+++++.++.
T Consensus        84 ~----~~~~~l~~~la~~~~~~~---~-~v~~~~gg~ea~~~a~~  120 (433)
T 1zod_A           84 S----RPVVDLATRLANITPPGL---D-RALLLSTGAESNEAAIR  120 (433)
T ss_dssp             C----HHHHHHHHHHHHHSCTTC---C-EEEEESCHHHHHHHHHH
T ss_pred             C----HHHHHHHHHHHHhCCCCc---C-EEEEeCchHHHHHHHHH
Confidence            2    233344443444444211   2 47788899998887653

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.24  E-value=7.6e-13  Score=120.75  Aligned_cols=99  Identities=13%  Similarity=0.043  Sum_probs=73.8

Q ss_pred             cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           80 VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        80 ~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      ...|+++++|+|+|+||.||++||||.+++++++|||+||+|++|+++|++++.+.+...+.+    +..+.+++.+...
T Consensus         9 ~~~~~~~~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~~~~~----~~~~~l~~~la~~   84 (430)
T 3i4j_A            9 SKPYPVAVRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSS----DVLEEYAGRLARF   84 (430)
T ss_dssp             SSCCCEEEEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTTCEE----HHHHHHHHHHHHH
T ss_pred             CCCCceEEeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcccccccccCC----HHHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999999998765543222222    2333444434434


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+...   + .+.++++|+|+++.++.
T Consensus        85 ~~~~~---~-~v~~~~gg~ea~~~al~  107 (430)
T 3i4j_A           85 VGLPT---F-RFWAVSGGSEATESAVK  107 (430)
T ss_dssp             TTCTT---C-EEEEESSHHHHHHHHHH
T ss_pred             CCCCC---C-EEEEeCcHHHHHHHHHH
Confidence            43211   2 47888999999887654

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.22  E-value=1.7e-12  Score=116.52  Aligned_cols=109  Identities=19%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             HHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCC
Q psy237           67 LKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSG  146 (236)
Q Consensus        67 l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~  146 (236)
                      ++++.++++...+.++|+++++|+|+++||.||++||||.+++++.++||+||+|.+|+.++++...+... .+..+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~-~~~~~~~~   81 (392)
T 3ruy_A            3 IIELTDTYGANNYHPLPIVISKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSR-AFHSDQLG   81 (392)
T ss_dssp             HHHHHHHHBCTTCCCCSCEECEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT-TSEETTHH
T ss_pred             HHHHHHhhhhccCCCCCceEEeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccccc-ccCCHHHH
Confidence            55666677777777889999999999999999999999999999999999999999999999987655432 12233334


Q ss_pred             ChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          147 DWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       147 elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ++++++++    ..+ .+     ...++++|++++..++.
T Consensus        82 ~l~~~la~----~~g-~~-----~v~~~~~gt~a~~~al~  111 (392)
T 3ruy_A           82 PWYEKVAK----LTN-KE-----MVLPMNTGAEAVETAIK  111 (392)
T ss_dssp             HHHHHHHH----HHT-CS-----EEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHH----hcC-CC-----EEEEeCcHHHHHHHHHH
Confidence            44444444    333 22     36777889888876654

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.21  E-value=4.6e-12  Score=115.65  Aligned_cols=115  Identities=19%  Similarity=0.161  Sum_probs=82.5

Q ss_pred             HHHHHHHHhcc-ccCCccc--cceeeecccccEEEeCCCCEEEeccCCcccccCCCC-hHHHHHHhhccccccccccCCC
Q psy237           64 TKALKQKLSQL-QQSGSVS--LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYN-HPALLKIFDDPATVKTFVNRPA  139 (236)
Q Consensus        64 s~~l~~~~~~~-~~~~~~~--~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~-hP~V~~Ai~~q~~~~~~~~~~~  139 (236)
                      +++++++..++ +...+..  +|+++.+++|+++||.||++|||+.++.+++++||+ ||+|++|+.+++++..+.....
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~~~~~~~   82 (419)
T 2eo5_A            3 SRKIIEESDIYLATSTRDPELFPLVIDHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND   82 (419)
T ss_dssp             HHHHHHHHHHHSCCCCCSSCCCCCCEEEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSCCCSCSC
T ss_pred             hHHHHHHHHhhhccccccccCCCceEEeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCccccccc
Confidence            56677777777 5554433  788999999999999999999999999999999999 9999999999998764422112


Q ss_pred             CCCCCCCChhhhhHhhhhhccCce-eeeeeeeeeecceEEeccccchh
Q psy237          140 LGVFPSGDWPQLLENVLLKQSGSV-SLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       140 ~~~~~~~elAE~Lae~Ll~~ap~~-~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.+    ...+.+++.+....+.. +   + .+.++++|+|++..++.
T Consensus        83 ~~~----~~~~~l~~~la~~~~~~~~---~-~v~~~~gg~ea~~~ai~  122 (419)
T 2eo5_A           83 FYN----IPQLELAKKLVTYSPGNFQ---K-KVFFSNSGTEAIEASIK  122 (419)
T ss_dssp             SCC----HHHHHHHHHHHHHSSCSSC---E-EEEEESSHHHHHHHHHH
T ss_pred             cCC----HHHHHHHHHHHHhCCCCcC---C-EEEEeCchHHHHHHHHH
Confidence            222    22334444344444421 1   2 47888999998886553

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.07  E-value=6.3e-11  Score=106.35  Aligned_cols=105  Identities=15%  Similarity=0.116  Sum_probs=77.9

Q ss_pred             HhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhh
Q psy237           71 LSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQ  150 (236)
Q Consensus        71 ~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE  150 (236)
                      .+.++...+.+.|+++++|+|+++||.||++|||+.+++++.++||+||+|.+|+.+++++..+... .+.    ....+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~-~~~----~~~~~   84 (406)
T 4adb_A           10 FDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGN-GYT----NEPVL   84 (406)
T ss_dssp             HHHHBCSSCCCCSSCEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCT-TSC----CHHHH
T ss_pred             HHHHhhhhcCCCCceEEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccC-CcC----CHHHH
Confidence            3455666677788999999999999999999999999999999999999999999999987654321 222    23344


Q ss_pred             hhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          151 LLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       151 ~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+++.+....+. +     ...++++|+++...++.
T Consensus        85 ~l~~~la~~~~~-~-----~v~~~~gg~~a~~~al~  114 (406)
T 4adb_A           85 RLAKKLIDATFA-D-----RVFFCNSGAEANEAALK  114 (406)
T ss_dssp             HHHHHHHHHSSC-S-----EEEEESSHHHHHHHHHH
T ss_pred             HHHHHHHhhCCC-C-----eEEEeCcHHHHHHHHHH
Confidence            444444444432 1     36677888888876554

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.05  E-value=2.3e-11  Score=111.69  Aligned_cols=96  Identities=9%  Similarity=0.033  Sum_probs=71.7

Q ss_pred             cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCC-CCCCCCCCChhhhhHhhhhhcc
Q psy237           82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRP-ALGVFPSGDWPQLLENVLLKQS  160 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~-~~~~~~~~elAE~Lae~Ll~~a  160 (236)
                      .|+++++++|+++||.||++|||+.++++++++||+||+|++|+.+|+++.. .+.. .+    ..+..+.+++.+....
T Consensus        32 ~~~~~~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~-~~~~~~~----~~~~~~~l~~~la~~~  106 (449)
T 3a8u_X           32 DPRLIVAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD-YSPGFQY----GHPLSFQLAEKITDLT  106 (449)
T ss_dssp             SCCCEEEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS-CCCSSSC----CCHHHHHHHHHHHTTS
T ss_pred             CCceEEeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC-Ccccccc----CCHHHHHHHHHHHHhC
Confidence            5788999999999999999999999999999999999999999999998754 2211 12    2233445555455455


Q ss_pred             CceeeeeeeeeeecceEEeccccchh
Q psy237          161 GSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       161 p~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +...   + .+.++++|+++.+.++.
T Consensus       107 ~~~~---~-~v~~~~ggsea~~~al~  128 (449)
T 3a8u_X          107 PGNL---N-HVFFTDSGSECALTAVK  128 (449)
T ss_dssp             STTE---E-EEEEESSHHHHHHHHHH
T ss_pred             CCCC---C-EEEEcCcHHHHHHHHHH
Confidence            4221   2 47888999998877653

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.04  E-value=4.2e-11  Score=108.39  Aligned_cols=116  Identities=16%  Similarity=0.080  Sum_probs=81.7

Q ss_pred             hHHHHHHHHhccccCCc-cccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCC
Q psy237           63 QTKALKQKLSQLQQSGS-VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~~~-~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      ++++++++..++++... ..+|+++++++|+++||.||++||||.++.++.++||.+|+|++|+.+++++..+.......
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~~~~~   82 (426)
T 1sff_A            3 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA   82 (426)
T ss_dssp             CHHHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEE
T ss_pred             hHHHHHHHHHHhcCccccccCCceEEecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHHHHHhCCCccccccC
Confidence            46778888888876643 34688999999999999999999999999999999999999999999998765432111111


Q ss_pred             CCCCCChhhhhHhhhhhccCc-eeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQSGS-VSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~-~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                          ......+.+.+....++ .+    ..+.++++++++...++.
T Consensus        83 ----~~~~~~l~~~la~~~~~~~~----~~v~~~~g~~~a~~~~~~  120 (426)
T 1sff_A           83 ----YEPYLELCEIMNQKVPGDFA----KKTLLVTTGSEAVENAVK  120 (426)
T ss_dssp             ----CHHHHHHHHHHHHHSSCSSC----EEEEEESSHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHHhCCcccc----cEEEEeCchHHHHHHHHH
Confidence                22233344334444432 21    136677888887776543

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.01  E-value=9.2e-11  Score=106.85  Aligned_cols=98  Identities=16%  Similarity=0.056  Sum_probs=69.8

Q ss_pred             cccee-eecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           81 SLFVD-YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        81 ~~p~~-i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      ++|++ +++++|+++||.||++|||+.++.+++.+||+||+|++|+.+++++..+.....+.+    ...+.+++.+...
T Consensus        23 ~~~~~~~~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~~~~----~~~~~l~~~la~~   98 (429)
T 1s0a_A           23 PLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITH----APAIELCRKLVAM   98 (429)
T ss_dssp             CCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEEC----HHHHHHHHHHHHH
T ss_pred             cCCceeEEeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccccCC----HHHHHHHHHHHHh
Confidence            45665 899999999999999999999999999999999999999999997754321112222    2233343334444


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+...   + .+.++++|+|++..++.
T Consensus        99 ~~~~~---~-~v~~~~ggtea~~~ai~  121 (429)
T 1s0a_A           99 TPQPL---E-CVFLADSGSVAVEVAMK  121 (429)
T ss_dssp             SCTTC---C-EEEEESSHHHHHHHHHH
T ss_pred             CCCCC---C-EEEEeCCHHHHHHHHHH
Confidence            43111   2 47888999998876553

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=98.93  E-value=1.9e-10  Score=107.91  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=49.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--CcccccccCCCCCccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSDDKTSHIPT  226 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~~~~~~~~~  226 (236)
                      ++++|+++||++|++||||++|++++++||+||+|++|+++  +++.|.+.....+.+.
T Consensus        51 ~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~  109 (456)
T 4atq_A           51 EDADGGIIRDVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGY  109 (456)
T ss_dssp             EEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTTTTSCCHHH
T ss_pred             EeeecCEEEeCCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCcccCccCcHHH
Confidence            59999999999999999999999999999999999999998  4477877665555443

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=98.79  E-value=2.5e-09  Score=100.38  Aligned_cols=48  Identities=19%  Similarity=0.288  Sum_probs=43.2

Q ss_pred             ceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          162 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       162 ~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      ++|+++  ++++|+++||.||++||||++|++++++||+||+|++|+.++
T Consensus        68 ~~P~~i--~~a~G~~l~D~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q  115 (454)
T 4ao9_A           68 PFPLTI--ARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEA  115 (454)
T ss_dssp             SCCCEE--EEEETTEEEETTCCEEEESSGGGGTTTTCSCCHHHHHHHHHH
T ss_pred             CCCccE--EEeecCEEEECCCCEEEEccccHHhhcccCCCHHHHHHHHHH
Confidence            345544  599999999999999999999999999999999999999983

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=98.76  E-value=2.7e-09  Score=95.59  Aligned_cols=111  Identities=12%  Similarity=0.048  Sum_probs=75.9

Q ss_pred             HHHHHHhcccc---CCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCC
Q psy237           66 ALKQKLSQLQQ---SGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGV  142 (236)
Q Consensus        66 ~l~~~~~~~~~---~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~  142 (236)
                      ++.++.++|..   ..+.++|+++++++|+++||.+|+.|||+.++.++..+||.+|+|.+|+.++++...+.+. .+  
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~-~~--   84 (395)
T 1vef_A            8 DWRALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQ-TL--   84 (395)
T ss_dssp             -CHHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT-TS--
T ss_pred             HHHHHHHhhhhhcccccCCCCccEEecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHHHHHhCCCCcc-cc--
Confidence            44455555533   4456688899999999999999999999999998899999999999999999876543221 11  


Q ss_pred             CCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccch
Q psy237          143 FPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHI  185 (236)
Q Consensus       143 ~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~  185 (236)
                        .....+.+++.+....+...   + .+.++++|+++...++
T Consensus        85 --~~~~~~~l~~~la~~~~~~~---~-~v~~~~gg~~a~~~al  121 (395)
T 1vef_A           85 --PTPMRGEFYRTLTAILPPEL---N-RVFPVNSGTEANEAAL  121 (395)
T ss_dssp             --CCHHHHHHHHHHHHTSCTTE---E-EEEEESSHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHhcCCCc---C-EEEEcCcHHHHHHHHH
Confidence              23344555554544443111   1 3566677777665544

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=98.74  E-value=2.2e-09  Score=101.06  Aligned_cols=52  Identities=23%  Similarity=0.417  Sum_probs=45.3

Q ss_pred             eeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          164 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       164 ~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++++  +++|+++||.+|++||||++|++++++||+||+|++|+++  +++.|++
T Consensus        50 P~vi~--rg~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~  103 (473)
T 4e3q_A           50 TVVVT--HGEGPYIVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYH  103 (473)
T ss_dssp             CEEEE--EEETTEEEETTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCC
T ss_pred             CEEEE--eeecCEEEeCCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhccccc
Confidence            44444  9999999999999999999999999999999999999998  4455554

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=98.74  E-value=3.1e-09  Score=95.42  Aligned_cols=98  Identities=20%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhh
Q psy237           78 GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLL  157 (236)
Q Consensus        78 ~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll  157 (236)
                      ....+|+++++++|+++||.||++||||.+++++..+||++|+|.+|+.+++++..+... .+    .....+.+++.+.
T Consensus        18 ~~~~~~~~~~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~~~~~~-~~----~~~~~~~l~~~la   92 (397)
T 2ord_A           18 TYSRFPATFVYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHCSN-LF----WNRPQMELAELLS   92 (397)
T ss_dssp             CCCCCSCEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCSCCCT-TS----EEHHHHHHHHHHH
T ss_pred             cccCCCceEEeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHHHHHhcccCcc-cc----CCHHHHHHHHHHH
Confidence            455678999999999999999999999999999999999999999999999887543221 11    1233444554444


Q ss_pred             hccCceeeeeeeeeeecceEEeccccchh
Q psy237          158 KQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       158 ~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ...+ .+     .+.++++|+++...++.
T Consensus        93 ~~~g-~~-----~v~~~~gg~~a~~~al~  115 (397)
T 2ord_A           93 KNTF-GG-----KVFFANTGTEANEAAIK  115 (397)
T ss_dssp             HTTT-SC-----EEEEESSHHHHHHHHHH
T ss_pred             HhcC-CC-----eEEEeCCHHHHHHHHHH
Confidence            4443 12     25666777777665443

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=98.57  E-value=6.2e-08  Score=88.33  Aligned_cols=67  Identities=13%  Similarity=0.061  Sum_probs=55.1

Q ss_pred             hhHHHHHHHHhccccCC-ccccceeee-cccccEEEeCCCCEEEeccCCcccccCC-CChHHHHHHhhcccccc
Q psy237           62 PQTKALKQKLSQLQQSG-SVSLFVDYQ-KSFGNYLVDVDGNHILDVYTQISSVPLG-YNHPALLKIFDDPATVK  132 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~-~~~~p~~i~-~a~G~~l~D~dG~~yLD~~~g~~~~~lG-h~hP~V~~Ai~~q~~~~  132 (236)
                      ++++++.+++++..+.. ....+.++. +++|+++|| ||++||||.++.   ++| |.||+|++|+.+++.+.
T Consensus        25 ~~~~~~~~~~~~~~~~g~~~r~~~~~~~~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~~~~~~   94 (427)
T 2w8t_A           25 SKFDGLIAERQKLLDSGVTDPFAIVMEQVKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKEALEKF   94 (427)
T ss_dssp             GGGHHHHHHHHHHHHTTCCCTTCCCCSEEEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCcceeeeeccccCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHHHHHHh
Confidence            46778888887776654 445556788 999999999 999999999883   589 79999999999998763

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=98.36  E-value=1.9e-07  Score=82.57  Aligned_cols=97  Identities=23%  Similarity=0.282  Sum_probs=67.8

Q ss_pred             ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhh
Q psy237           79 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK  158 (236)
Q Consensus        79 ~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~  158 (236)
                      ..++|+++++++|+++||.+|+.||||.++....++||.+|+|.+++.+++++..+... .+..    ...+.+++.+..
T Consensus         7 ~~~~~~~~~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~~~~~~-~y~~----~~~~~l~~~la~   81 (375)
T 2eh6_A            7 YARLPVKFVRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHVSN-LYEN----PWQEELAHKLVK   81 (375)
T ss_dssp             CCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHCSCCCT-TBCC----HHHHHHHHHHHH
T ss_pred             CcCCCccEEeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhccccCc-ccCC----HHHHHHHHHHHh
Confidence            34578999999999999999999999999988789999999999999999876432211 1211    223334443443


Q ss_pred             ccCceeeeeeeeeeecceEEeccccch
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHI  185 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~  185 (236)
                      ..+ .+   + ...++++++++...++
T Consensus        82 ~~g-~~---~-~v~~~~g~t~a~~~~~  103 (375)
T 2eh6_A           82 HFW-TE---G-KVFFANSGTESVEAAI  103 (375)
T ss_dssp             TSS-SC---E-EEEEESSHHHHHHHHH
T ss_pred             hcC-CC---C-eEEEeCchHHHHHHHH
Confidence            332 21   1 3566777888776654

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=98.34  E-value=1.5e-07  Score=86.85  Aligned_cols=50  Identities=20%  Similarity=0.321  Sum_probs=44.4

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      ++++.|+++||.+|++||||.++++++++||+||+|++|+.+  +...|++.
T Consensus        47 ~~~g~G~~v~d~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~   98 (451)
T 3oks_A           47 AVRAGGGIVEDVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCF   98 (451)
T ss_dssp             EEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCSCCTT
T ss_pred             EEEeecCEEEECCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcccccC
Confidence            359999999999999999999999999999999999999998  44556543

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=98.30  E-value=1.3e-07  Score=87.73  Aligned_cols=49  Identities=22%  Similarity=0.323  Sum_probs=43.8

Q ss_pred             eeeeecceEEec-ccc--chhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          169 YQKSFGNYLVDV-DGN--HILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       169 ~~~~~G~sgsDA-~g~--a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      ++++.|++.||. +|+  +||||.++++++++||+||+|++|+.+  +++.|++
T Consensus        58 ~~~~~G~~l~d~~dG~~~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~  111 (457)
T 3tfu_A           58 AVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVM  111 (457)
T ss_dssp             EEEEEBTEEEEEETTEEEEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC
T ss_pred             EEeeecCEEEEccCCCeeEEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcc
Confidence            358999999999 999  999999999999999999999999998  3455655

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=98.30  E-value=1.6e-07  Score=86.77  Aligned_cols=50  Identities=26%  Similarity=0.375  Sum_probs=44.1

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccccc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSD  218 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~  218 (236)
                      ++++.|+++||.+|++||||.++++++++||+||+|++|+.+  ++..|++.
T Consensus        50 ~~~~~G~~v~d~~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~  101 (453)
T 4ffc_A           50 AVDADGGVIVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCF  101 (453)
T ss_dssp             EEEEETTEEEETTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCTT
T ss_pred             EEeeecCEEEeCCCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhcccccc
Confidence            358999999999999999999999999999999999999998  33556543

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=98.25  E-value=1.9e-06  Score=76.58  Aligned_cols=50  Identities=16%  Similarity=0.092  Sum_probs=43.4

Q ss_pred             cccceeeecccccEEEeCCCCEEEeccCCcccccCC-CChHHHHHHhhccccccc
Q psy237           80 VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLG-YNHPALLKIFDDPATVKT  133 (236)
Q Consensus        80 ~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lG-h~hP~V~~Ai~~q~~~~~  133 (236)
                      ...+..+++++|++||| ||++||||.++   .++| |++|+|.+++.+++.+..
T Consensus        24 ~~~~~~~~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~~   74 (399)
T 3tqx_A           24 YKSERIITSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQTVVEQYG   74 (399)
T ss_dssp             CCCCCCBCSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHHHHHHHC
T ss_pred             ccccccccCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHHHHHHhC
Confidence            34567789999999999 99999999988   5688 899999999999987743

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=98.18  E-value=4e-07  Score=84.81  Aligned_cols=44  Identities=64%  Similarity=1.198  Sum_probs=41.2

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      ++++.|+++||.+|++||||.+|++++++||+||+|++|+.++.
T Consensus        49 ~~~~~G~~l~d~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~   92 (472)
T 1ohv_A           49 YEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQ   92 (472)
T ss_dssp             GGGCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGG
T ss_pred             EEEEEcCEEEeCCCCEEEECCCCHhhcccCCCCHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999854

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=97.48  E-value=2.2e-07  Score=87.20  Aligned_cols=43  Identities=19%  Similarity=0.372  Sum_probs=40.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      +++.|+++||.+|++||||.++++++++||+||+|++|+.++.
T Consensus        87 ~~~~G~~l~D~dG~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~  129 (465)
T 2yky_A           87 AQGTGSRFQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERAL  129 (465)
Confidence            4899999999999999999999999999999999999999844

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=98.17  E-value=4.4e-07  Score=84.59  Aligned_cols=48  Identities=17%  Similarity=0.292  Sum_probs=42.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC--cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP--ATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~--~~~~~~  217 (236)
                      +++.|++.||.+|++||||.++++++++||+||+|++|+.++  .+.|.+
T Consensus        41 ~~~~G~~~~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~   90 (476)
T 3i5t_A           41 THAEGIYVHTEDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS   90 (476)
T ss_dssp             EEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC
T ss_pred             EEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc
Confidence            589999999999999999999999999999999999999983  344443

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=98.13  E-value=1.8e-06  Score=77.11  Aligned_cols=51  Identities=18%  Similarity=0.197  Sum_probs=44.5

Q ss_pred             ccccceeeecccccEEEeCCCCEEEeccCCcccccCCC-ChHHHHHHhhcccccc
Q psy237           79 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVK  132 (236)
Q Consensus        79 ~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~  132 (236)
                      ...+|..+++++|+++||.||++||||.++   .++|| .+|+|.+|+.++++..
T Consensus        24 ~~~~~~~~~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~~~~~~   75 (401)
T 1fc4_A           24 LFKEERIITSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAGMDSH   75 (401)
T ss_dssp             CCCCCCCBCSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHHHHHH
T ss_pred             CeeeeeeeccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHHHHHHh
Confidence            345678899999999999999999999888   35997 8999999999988753

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=98.13  E-value=7.9e-07  Score=82.87  Aligned_cols=42  Identities=26%  Similarity=0.485  Sum_probs=40.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|++.||.+|++||||.++++++++||+||+|++|+.++
T Consensus        42 ~~~~G~~l~d~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~   83 (472)
T 3hmu_A           42 TRARGVWLNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQ   83 (472)
T ss_dssp             EEEEBTEEEETTCCEEECTTHHHHTCTTCBCCHHHHHHHHHH
T ss_pred             EEeecCEEEECCCCEEEECCCchhhccCCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999983

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=98.10  E-value=6.4e-07  Score=82.20  Aligned_cols=47  Identities=13%  Similarity=0.169  Sum_probs=42.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKC  216 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~  216 (236)
                      +++.|+++||.+|++||||.++++++++||+||+|++|+.+  +...|.
T Consensus        31 ~~g~G~~v~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~   79 (448)
T 3dod_A           31 ESGTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHS   79 (448)
T ss_dssp             EEEEBTEEEETTSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCC
T ss_pred             EEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCc
Confidence            48999999999999999999999999999999999999998  444443

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=98.08  E-value=1.4e-06  Score=79.15  Aligned_cols=41  Identities=34%  Similarity=0.560  Sum_probs=39.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +++.|++.||.+|++||||.++++++++||+||+|++|+.+
T Consensus        40 ~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~   80 (429)
T 4e77_A           40 ERADGAYLFDVDGKAYIDYVGSWGPMILGHNHPAIRQAVIE   80 (429)
T ss_dssp             EEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHH
T ss_pred             EEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999998

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.07  E-value=2.6e-07  Score=92.46  Aligned_cols=58  Identities=9%  Similarity=0.006  Sum_probs=49.4

Q ss_pred             eeeec--ceEEecccc----chhhhhccccccccCCC-CHHHHHhhhc--CcccccccCCCCCcccc
Q psy237          170 QKSFG--NYLVDVDGN----HILDVYTQISSVPLGYN-HPALLKIFDD--PATVKCSDDKTSHIPTF  227 (236)
Q Consensus       170 ~~~~G--~sgsDA~g~----a~lD~~sg~~~~~lGh~-~p~i~~A~~~--~~~~~~~~~~~~~~~~~  227 (236)
                      +++.|  +++||.+|+    +|||++||+|++++||+ ||+|++|+++  +++.|++..+.++.|++
T Consensus       361 ~~a~G~g~~l~D~dG~~~~~~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~h~~~~~~~~~~~~  427 (831)
T 4a0g_A          361 DSRCGENFSIYKASDNSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPAL  427 (831)
T ss_dssp             EEEETTEEEEEEHHHHSEEEEEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHSSCCCTTEECHHHH
T ss_pred             EEeeccceEEEECCCCccchheeeecccHhhcCCCCCCCHHHHHHHHHHHhhcccccccccCCHHHH
Confidence            47888  489999999    99999999999999999 9999999998  44778765566666654

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=98.05  E-value=1.7e-06  Score=78.66  Aligned_cols=42  Identities=17%  Similarity=0.312  Sum_probs=40.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|++.||.+|++||||.++++++++||+||+|++|+.++
T Consensus        40 ~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~   81 (429)
T 3k28_A           40 ERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAV   81 (429)
T ss_dssp             EEEEBTEEEETTCCEEEESCGGGTTCTTCBSCHHHHHHHHHH
T ss_pred             EEeecCEEEECCCCEEEECCCChhhcccCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999883

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=98.05  E-value=1.2e-06  Score=80.19  Aligned_cols=46  Identities=22%  Similarity=0.292  Sum_probs=42.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVK  215 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~  215 (236)
                      +++.|++++|.+|++||||.++++++++||+||+|++|+.+  +...|
T Consensus        36 ~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~   83 (452)
T 3n5m_A           36 AKAEGCWVEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSY   83 (452)
T ss_dssp             EEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCC
T ss_pred             EEeeeCEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCC
Confidence            58999999999999999999999999999999999999988  44445

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=98.01  E-value=2.2e-06  Score=77.85  Aligned_cols=42  Identities=29%  Similarity=0.527  Sum_probs=40.2

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|++.||.+|++||||.++++++++||+||+|++|+.++
T Consensus        42 ~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~   83 (434)
T 3l44_A           42 ERGKGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTA   83 (434)
T ss_dssp             EEEEBTEEEETTCCEEEECCGGGTTCSSCBTCHHHHHHHHHH
T ss_pred             EEeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999884

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=97.98  E-value=3.2e-06  Score=76.56  Aligned_cols=41  Identities=24%  Similarity=0.389  Sum_probs=39.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +++.|++.||.+|++||||.++++++++||+||+|++|+.+
T Consensus        39 ~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~   79 (427)
T 3fq8_A           39 DRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKV   79 (427)
T ss_dssp             EEEEBTEEEETTSCEEEESSGGGTTCTTCBTCHHHHHHHHH
T ss_pred             EEeeeCEEEECCCCEEEECCCchhhhccCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999988

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=97.96  E-value=3.9e-06  Score=77.08  Aligned_cols=47  Identities=26%  Similarity=0.444  Sum_probs=42.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKC  216 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~  216 (236)
                      +++.|++.||.+|++||||.+|++++++||+||+|++|+.+  +...|.
T Consensus        63 ~~~~G~~~~d~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~  111 (439)
T 2oat_A           63 ERGKGIYLWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT  111 (439)
T ss_dssp             EEEEBTEEEETTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCC
T ss_pred             EeeecCEEEECCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcc
Confidence            58999999999999999999999999999999999999998  334443

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=97.92  E-value=2.4e-06  Score=78.70  Aligned_cols=42  Identities=26%  Similarity=0.432  Sum_probs=40.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|++++|.+|++||||.++++++++||+||+|++|+.++
T Consensus        37 ~~~~G~~~~d~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~   78 (459)
T 4a6r_A           37 TRGEGVYLWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQ   78 (459)
T ss_dssp             EEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHH
T ss_pred             EEeecCEEEECCCCEEEECCCchhcccCCCCCHHHHHHHHHH
Confidence            489999999999999999999999999999999999999883

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=97.90  E-value=5.1e-06  Score=76.10  Aligned_cols=47  Identities=26%  Similarity=0.454  Sum_probs=42.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKC  216 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~  216 (236)
                      +.+.|++.||.+|++||||.+|++++++||+||+|++|+.+  +...+.
T Consensus        52 ~~~~g~~~~d~~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~~~  100 (433)
T 1z7d_A           52 KRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC  100 (433)
T ss_dssp             EEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCC
T ss_pred             EeeecCEEEECCCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCCCc
Confidence            58999999999999999999999999999999999999998  334443

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=97.84  E-value=4.6e-06  Score=74.52  Aligned_cols=48  Identities=29%  Similarity=0.425  Sum_probs=42.6

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      +++.|++.||.+|++||||.++++++++||+||+|.+|+.+  +...|.+
T Consensus        23 ~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~   72 (395)
T 3nx3_A           23 EKGQGVYLFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS   72 (395)
T ss_dssp             EEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC
T ss_pred             EeeeeeEEEECCCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc
Confidence            48999999999999999999999999999999999999988  4444443

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=97.83  E-value=5.4e-06  Score=75.44  Aligned_cols=47  Identities=26%  Similarity=0.361  Sum_probs=42.2

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Cccccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKC  216 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~  216 (236)
                      +.+.|++.||.+|+.|+||.++++++++||++|+|++|+.+  +...+.
T Consensus        44 ~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~~~~   92 (420)
T 2pb2_A           44 VKGKGSRVWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHT   92 (420)
T ss_dssp             EEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCC
T ss_pred             EeeecCEEEECCCCEEEEccccccccccCCCCHHHHHHHHHHHHhcccc
Confidence            58999999999999999999999999999999999999998  344443

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=97.80  E-value=6.2e-06  Score=75.94  Aligned_cols=42  Identities=17%  Similarity=0.331  Sum_probs=40.0

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +++.|++++|.+|++||||.++++++++||+||+|++|+.++
T Consensus        38 ~~~~G~~~~d~~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~   79 (460)
T 3gju_A           38 AGGEGVTVWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQ   79 (460)
T ss_dssp             EEEEBTEEEETTCCEEEETTHHHHTCTTCBCCHHHHHHHHHH
T ss_pred             EEeeccEEEECCCCEEEECCcchhhccCCCCCHHHHHHHHHH
Confidence            489999999999999999999999999999999999999883

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=97.78  E-value=3e-05  Score=68.69  Aligned_cols=59  Identities=19%  Similarity=0.306  Sum_probs=46.6

Q ss_pred             HHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCC-CChHHHHHHhhcccccc
Q psy237           70 KLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLG-YNHPALLKIFDDPATVK  132 (236)
Q Consensus        70 ~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lG-h~hP~V~~Ai~~q~~~~  132 (236)
                      +..+.-.....++|.++++++|++|| .+|++||||.++.   ++| +.+|+|.+++.++++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~g~~~id~~~~~---~~~~~~~~~v~~a~~~~~~~~   69 (384)
T 1bs0_A           10 ALDARRAADALRRRYPVAQGAGRWLV-ADDRQYLNFSSND---YLGLSHHPQIIRAWQQGAEQF   69 (384)
T ss_dssp             HHHHCCGGGCCCCCCCCSBCSSSEEE-ETTEEEEECSCCC---TTSGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCccccccccCCCCceEE-ECCceEEEeeccC---ccCCCCCHHHHHHHHHHHHHh
Confidence            33333333445678889999999999 7999999998873   378 69999999999998763

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=97.75  E-value=1.3e-05  Score=71.31  Aligned_cols=56  Identities=21%  Similarity=0.410  Sum_probs=45.5

Q ss_pred             HhhhhhccCceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          153 ENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       153 ae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      ++++...+...++++  ..+.|++.+|.+|++|+||.+++++.++||++|+|.+|+.+
T Consensus         8 ~~~~~~~~~~~~~~~--~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~   63 (392)
T 3ruy_A            8 DTYGANNYHPLPIVI--SKAEGVWVEDPEGNRYMDLLSAYSAVNQGHRHPKIINALID   63 (392)
T ss_dssp             HHHBCTTCCCCSCEE--CEEEBTEEECTTCCEEEESSHHHHTCTTCBTCHHHHHHHHH
T ss_pred             HhhhhccCCCCCceE--EeeeeCEEEeCCCCEEEEcCCChhhhccCCCCHHHHHHHHH
Confidence            343443444444433  48999999999999999999999999999999999999988

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=97.67  E-value=2.3e-05  Score=69.84  Aligned_cols=95  Identities=15%  Similarity=0.066  Sum_probs=61.9

Q ss_pred             ccceeeecccccEEEeCCCCEEEeccCCcccccCCC-ChHHHHHHhhccccccccccCCCCCCC-CCCChhhhhHhhhhh
Q psy237           81 SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVKTFVNRPALGVF-PSGDWPQLLENVLLK  158 (236)
Q Consensus        81 ~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~~~~~~~~~~~~-~~~elAE~Lae~Ll~  158 (236)
                      ++|.++++++|+++| .||+.+|||.+|..   +|| .+|+|.+++.+++....... ..+... -..++.+.+++.+..
T Consensus        25 ~~~~~~~~~~g~~~~-~~g~~~idl~~~~~---~~~~~~~~v~~a~~~~~~~~~~~~-~~~~~~~g~~~~~~~l~~~la~   99 (398)
T 3a2b_A           25 AYFRPIQSKQDTEVK-IDGRRVLMFGSNSY---LGLTTDTRIIKAAQDALEKYGTGC-AGSRFLNGTLDIHVELEEKLSA   99 (398)
T ss_dssp             CSSCCBCSCSSSEEE-ETTEEEEECSCSCT---TCGGGCHHHHHHHHHHHHHHCSCC-CSBTTTTCCCHHHHHHHHHHHH
T ss_pred             cceeeecCCCCceEE-ECCceEEEeecccc---cCCCCCHHHHHHHHHHHHHcCCCC-CCcCcccCCcHHHHHHHHHHHH
Confidence            477889999999999 99999999988843   788 89999999999887643211 011111 123445555554444


Q ss_pred             ccCceeeeeeeeeeecceEEeccccchh
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+. +     ...+.++|+++...++.
T Consensus       100 ~~g~-~-----~v~~~~ggt~a~~~~~~  121 (398)
T 3a2b_A          100 YVGK-E-----AAILFSTGFQSNLGPLS  121 (398)
T ss_dssp             HHTC-S-----EEEEESSHHHHHHHHHH
T ss_pred             HhCC-C-----cEEEECCHHHHHHHHHH
Confidence            3332 1     24556667776665444

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=97.63  E-value=9.3e-06  Score=74.69  Aligned_cols=48  Identities=40%  Similarity=0.719  Sum_probs=42.0

Q ss_pred             eeeeeeeeeeecceEEe-ccccchhhhhccccccccCCCCHHHH-H-hhhc
Q psy237          163 VSLFVDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALL-K-IFDD  210 (236)
Q Consensus       163 ~~~~i~~~~~~G~sgsD-A~g~a~lD~~sg~~~~~lGh~~p~i~-~-A~~~  210 (236)
                      ++++++++++.|++.|| .+|++||||.++++++++||+||+|+ + |+.+
T Consensus        33 ~~~~~~~~~~~g~~~~d~~~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~   83 (449)
T 2cjg_A           33 LDIVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHA   83 (449)
T ss_dssp             CSSCBCTTTCBBTEEEBTTTCCEEEESSHHHHTCSSCBSCHHHHTCHHHHH
T ss_pred             CCeeEEEeeeeeCEEEECCCCcEEEEccCCccccCCCCCCHHHHHHHHHHH
Confidence            34444445899999999 99999999999999999999999999 9 8887

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=97.56  E-value=3.3e-05  Score=69.93  Aligned_cols=41  Identities=32%  Similarity=0.504  Sum_probs=39.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.||.+|++|+||.++++++++||+||+|++|+.+
T Consensus        39 ~~~~g~~~~d~~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~   79 (424)
T 2e7u_A           39 VRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRE   79 (424)
T ss_dssp             EEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHH
T ss_pred             EeeecCEEEeCCCCEEEEccccccccccCCCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999988

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=97.53  E-value=1.9e-05  Score=71.56  Aligned_cols=41  Identities=17%  Similarity=0.192  Sum_probs=39.6

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.+|.+|++||||.++++++++||++|+|++|+.+
T Consensus        16 ~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~   56 (430)
T 3i4j_A           16 VRGEGVFLYDDAGRRYLDGSSGALVANIGHGRAEVGERMAA   56 (430)
T ss_dssp             EEEEBTEEEETTSCEEEETTHHHHTCTTCBCCHHHHHHHHH
T ss_pred             EeeecCEEEECCCCEEEECCCchhccccCCCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999988

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=97.52  E-value=3.6e-05  Score=68.56  Aligned_cols=57  Identities=19%  Similarity=0.342  Sum_probs=46.1

Q ss_pred             hHhhhhhccCceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          152 LENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       152 Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      .+++++..+...+++  .+.+.|++.||.+|++|+||.++++++++||++|++.+|+.+
T Consensus        10 ~~~~~~~~~~~~~~~--~~~~~g~~~~~~~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~   66 (406)
T 4adb_A           10 FDEWMIPVYAPAPFI--PVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPELREALNE   66 (406)
T ss_dssp             HHHHBCSSCCCCSSC--EEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHH
T ss_pred             HHHHhhhhcCCCCce--EEeeccCEEEeCCCCEEEECCCchhhcccCCCCHHHHHHHHH
Confidence            344444444444433  358999999999999999999999999999999999999987

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=97.49  E-value=4.4e-05  Score=69.25  Aligned_cols=41  Identities=24%  Similarity=0.536  Sum_probs=39.6

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.+|.+|++|+||.++.+++++||+||+|.+|+.+
T Consensus        30 ~~~~G~~v~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~   70 (439)
T 3dxv_A           30 SGGRGARLIEENGRELIDLSGAWGAASLGYGHPAIVAAVSA   70 (439)
T ss_dssp             EEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHH
T ss_pred             EEeeeCEEEeCCCCEEEECCCchhhccCCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999988

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=97.46  E-value=1.2e-05  Score=72.87  Aligned_cols=95  Identities=9%  Similarity=-0.018  Sum_probs=62.4

Q ss_pred             cceeeecccccEEEeCC--CCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhc
Q psy237           82 LFVDYQKSFGNYLVDVD--GNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQ  159 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~d--G~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~  159 (236)
                      .+++..+++|+++||.+  |+.||||..|  . +.++.+|+|++|+++|++...+    .+ .....++.+.+++.+...
T Consensus        41 ~~~~~~~g~g~~~~d~~~~g~~~i~~~~~--~-~~~~~~~~v~~a~~~~~~~~~~----~y-~~~~~~l~~~l~~~l~~~  112 (421)
T 3l8a_A           41 TTRPDRLNQFTYKWKTSENNPELLQMWVA--D-MDFLPVPEIKEAIINYGREHIF----GY-NYFNDDLYQAVIDWERKE  112 (421)
T ss_dssp             SCCCCCTTTTBTTTGGGTTCTTCEECCSS--C-CCSCCCHHHHHHHHHHHHHCCS----SC-BCCCHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCCccccccCCCCCeeecccC--C-CCCCCCHHHHHHHHHHHhcCCc----CC-CCCCHHHHHHHHHHHHHH
Confidence            45678899999999999  8999999665  3 3456999999999999876332    11 122245566666644333


Q ss_pred             cCceeeeeeeeeeecceEEeccccchh
Q psy237          160 SGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       160 ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      .+. ... ...+.++++++++.+.++.
T Consensus       113 ~g~-~~~-~~~v~~~~g~~ea~~~a~~  137 (421)
T 3l8a_A          113 HDY-AVV-KEDILFIDGVVPAISIALQ  137 (421)
T ss_dssp             HCC-CCC-GGGEEEESCHHHHHHHHHH
T ss_pred             hCC-CCC-HHHEEEcCCHHHHHHHHHH
Confidence            220 000 1136677888877776554

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=97.46  E-value=5e-05  Score=68.90  Aligned_cols=41  Identities=32%  Similarity=0.615  Sum_probs=39.6

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +++.|++.||.+|++|+||.++++++++||+||+|++|+.+
T Consensus        43 ~~~~G~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~   83 (434)
T 2epj_A           43 KRGEGAYLYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEE   83 (434)
T ss_dssp             EEEEBTEEEETTCCEEEESSGGGTTCTTCBTCHHHHHHHHH
T ss_pred             EeeecCEEEECCCCEEEEcccchhcccCCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999988

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=97.28  E-value=0.00012  Score=66.89  Aligned_cols=42  Identities=29%  Similarity=0.422  Sum_probs=39.9

Q ss_pred             eeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          169 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       169 ~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      ++++.|++.||.+|+.|+||.++++++++||++|+|++|+.+
T Consensus        43 ~~~~~G~~~~d~~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~   84 (453)
T 2cy8_A           43 ISDAQGVHKTDVDGNVYLDFFGGHGALVLGHGHPRVNAAIAE   84 (453)
T ss_dssp             EEEEEBTEEEETTCCEEEESCTTTTSCTTCBTCHHHHHHHHH
T ss_pred             EEEeecCEEEECCCCEEEECcccHhhcccCCCCHHHHHHHHH
Confidence            358999999999999999999999999999999999999988

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=97.26  E-value=0.00019  Score=64.89  Aligned_cols=41  Identities=37%  Similarity=0.585  Sum_probs=39.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCC-CHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYN-HPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~-~p~i~~A~~~  210 (236)
                      +.+.|++.||.+|+.|+||.++.+++++||+ +|+|++|+.+
T Consensus        29 ~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~   70 (419)
T 2eo5_A           29 DHGEGVWIYDVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIE   70 (419)
T ss_dssp             EEEEBTEEEETTSCEEEESSGGGGTTTTCBSCCHHHHHHHHH
T ss_pred             EeeecCEEEECCCCEEEEccCChhhhccCCCCCHHHHHHHHH
Confidence            5889999999999999999999999999999 9999999988

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=97.26  E-value=4.5e-05  Score=67.15  Aligned_cols=93  Identities=12%  Similarity=0.006  Sum_probs=59.0

Q ss_pred             eeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCce
Q psy237           84 VDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSV  163 (236)
Q Consensus        84 ~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~  163 (236)
                      +...+|+|+++||.||++||||.+|.  ..+ ..+|+|++|+.+++....+    .+.. ...++.+.+++.+...... 
T Consensus         7 ~~~~~~~g~~~~d~~g~~~idl~~~~--~~~-~~~~~v~~a~~~~~~~~~~----~y~~-~~~~lr~~la~~~~~~~~~-   77 (377)
T 3fdb_A            7 IEDLRARNTMKWTRYGQGVLPLWVAE--SDF-STCPAVLQAITDAVQREAF----GYQP-DGSLLSQATAEFYADRYGY-   77 (377)
T ss_dssp             HHHHHHTCCHHHHSSCTTSEECCSSC--CCS-CCCHHHHHHHHHHHHTTCC----SSCC-SSCCHHHHHHHHHHHHHCC-
T ss_pred             HHHhcCCCCceeeccCCCeeeecccC--CCC-CCCHHHHHHHHHHHHcCCC----CCCC-CCHHHHHHHHHHHHHHhCC-
Confidence            34569999999999999999998874  334 4899999999999876322    1222 2366777777644321110 


Q ss_pred             eeeeeeeeeecceEEeccccchh
Q psy237          164 SLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       164 ~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..-.+ ...++++++++....+.
T Consensus        78 ~~~~~-~i~~t~g~~~a~~~~~~   99 (377)
T 3fdb_A           78 QARPE-WIFPIPDVVRGLYIAID   99 (377)
T ss_dssp             CCCGG-GEEEESCHHHHHHHHHH
T ss_pred             CCCHH-HEEEeCChHHHHHHHHH
Confidence            00001 34556667776655443

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=97.25  E-value=6.1e-05  Score=66.48  Aligned_cols=92  Identities=9%  Similarity=-0.018  Sum_probs=58.6

Q ss_pred             ceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCc
Q psy237           83 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGS  162 (236)
Q Consensus        83 p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~  162 (236)
                      .++..+++|+++||.+|+.||||..|.   +..+.+|+|.+|+.+++....+    .+. ....++.+.+++.+....+.
T Consensus        10 ~~~~~~~~g~~~~d~~g~~~i~~~~~~---~~~~~~~~v~~a~~~~~~~~~~----~y~-~~~~~l~~~la~~l~~~~g~   81 (391)
T 3dzz_A           10 THVPKRQGNSIKWGVLKEKELPMWIAE---MDFKIAPEIMASMEEKLKVAAF----GYE-SVPAEYYKAVADWEEIEHRA   81 (391)
T ss_dssp             SSCCCCCTTBTTTTTCCTTCEECCSSC---CSSCCCHHHHHHHHHHHTTCCC----CCB-CCCHHHHHHHHHHHHHHHSC
T ss_pred             chhccCCCCccceeccCCCceeccccC---CCCCCCHHHHHHHHHHHhcCcC----CCC-CCCHHHHHHHHHHHHHHhCC
Confidence            356779999999999999999998773   3456999999999999876432    111 12345566666644332220


Q ss_pred             -eeeeeeeeeeecceEEeccccch
Q psy237          163 -VSLFVDYQKSFGNYLVDVDGNHI  185 (236)
Q Consensus       163 -~~~~i~~~~~~G~sgsDA~g~a~  185 (236)
                       ..  .+ ...++++++++....+
T Consensus        82 ~~~--~~-~i~~~~g~~~a~~~~~  102 (391)
T 3dzz_A           82 RPK--ED-WCVFASGVVPAISAMV  102 (391)
T ss_dssp             CCC--GG-GEEEESCHHHHHHHHH
T ss_pred             CCC--HH-HEEECCCHHHHHHHHH
Confidence             00  01 2455666666655443

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=97.18  E-value=0.00011  Score=66.33  Aligned_cols=41  Identities=29%  Similarity=0.582  Sum_probs=39.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.||.+|++|+||.++.++.++||++|+|.+|+.+
T Consensus        30 ~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~   70 (433)
T 1zod_A           30 ERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGE   70 (433)
T ss_dssp             CEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHH
T ss_pred             EEeecCEEEeCCCCEEEEcccchhccccCCCCHHHHHHHHH
Confidence            58899999999999999999999999999999999999988

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=97.10  E-value=0.00016  Score=65.83  Aligned_cols=42  Identities=17%  Similarity=0.289  Sum_probs=39.8

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~  211 (236)
                      +.+.|++.||.+|+.|+||.++++++++||++|+|++|+.++
T Consensus        37 ~~~~g~~~~d~~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~   78 (449)
T 3a8u_X           37 VAAEGSWLVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQ   78 (449)
T ss_dssp             EEEEBTEEEETTCCEEEETTHHHHTCTTCBSCHHHHHHHHHH
T ss_pred             EeeecCEEEECCCCEEEECCccHhhccCCCCCHHHHHHHHHH
Confidence            589999999999999999999999999999999999999883

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=96.86  E-value=0.00046  Score=62.29  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=39.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.||.+|+.|+|+.++.+++++||++|+|++|+.+
T Consensus        30 ~~~~g~~~~d~~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~   70 (429)
T 1s0a_A           30 VSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS   70 (429)
T ss_dssp             EEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHH
T ss_pred             EeeeeeEEEeCCCCEEEEcCccHhhccCCCCCHHHHHHHHH
Confidence            48899999999999999999999999999999999999988

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=96.78  E-value=0.00042  Score=62.02  Aligned_cols=44  Identities=11%  Similarity=0.038  Sum_probs=36.5

Q ss_pred             eecccccEEEeCCCCEEEeccCCcccccCCC-ChHHHHHHhhcccccc
Q psy237           86 YQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVK  132 (236)
Q Consensus        86 i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~  132 (236)
                      ..++.|.+++|.||++||||.+. .  .+|+ .||+|++|+.+++++.
T Consensus        45 ~~~~~~~~~~~~~g~~~ld~~s~-~--~l~~~~~p~v~~a~~~~l~~~   89 (409)
T 3kki_A           45 NKNGKHLVLGKQASPDDIILQSN-D--YLALANHPLIKARLAKSLLEE   89 (409)
T ss_dssp             STTSSCTTCCCCCCTTSEECCCS-C--TTCCTTCHHHHHHHHHHHHSC
T ss_pred             ccCCCeeeeCCCCCCceEEeecc-C--ccCCcCCHHHHHHHHHHHHHc
Confidence            55889999999999999999775 2  3555 5899999999998873

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=95.78  E-value=0.00023  Score=63.43  Aligned_cols=45  Identities=13%  Similarity=0.108  Sum_probs=37.2

Q ss_pred             eeeecccccEEEeCCCC--EEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           84 VDYQKSFGNYLVDVDGN--HILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        84 ~~i~~a~G~~l~D~dG~--~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ++..+|+|+++||.||+  .+|||..|..  .++ .+|+|++|+.+++..
T Consensus        13 ~~~~~~~g~~~~d~~g~~~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~   59 (392)
T 3b1d_A           13 APNRLSHHTYKWKETETDPQLLPAWIADM--DFE-VMPEVKQAIHDYAEQ   59 (392)
Confidence            34567999999999999  9999977653  455 489999999999865

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=96.68  E-value=0.00082  Score=60.17  Aligned_cols=41  Identities=22%  Similarity=0.342  Sum_probs=39.2

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.||.+|+.|+||.++.++.++||.+|+|.+|+.+
T Consensus        28 ~~~~g~~~~d~~g~~~id~~~~~~~~~lg~~~~~v~~a~~~   68 (426)
T 1sff_A           28 DRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEA   68 (426)
T ss_dssp             EEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHH
T ss_pred             EecccCEEEeCCCCEEEEcccChhhcccCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999987

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=96.45  E-value=0.001  Score=59.19  Aligned_cols=41  Identities=32%  Similarity=0.498  Sum_probs=39.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.||.+|+.|+||.+++++..+||++|++.+|+.+
T Consensus        27 ~~~~g~~~~d~~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~   67 (397)
T 2ord_A           27 VYGKGSWIYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKD   67 (397)
T ss_dssp             EEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHH
T ss_pred             EeeecCEEEECCCCEEEECCccccccccCCCCHHHHHHHHH
Confidence            48999999999999999999999999999999999999987

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=96.45  E-value=0.0014  Score=58.09  Aligned_cols=41  Identities=20%  Similarity=0.362  Sum_probs=39.1

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.+.|++.||.+|+.|+||.++.+++++||.+|.+.+|+.+
T Consensus        32 ~~~~g~~~~d~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~   72 (395)
T 1vef_A           32 VRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKR   72 (395)
T ss_dssp             EEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHH
T ss_pred             EecccCEEEeCCCCEEEEccCccccccCCCCCHHHHHHHHH
Confidence            58999999999999999999999999999999999999987

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=96.34  E-value=0.0018  Score=57.26  Aligned_cols=63  Identities=8%  Similarity=0.129  Sum_probs=30.5

Q ss_pred             eecccccEEEeCCCC-----EEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCC-hhhhhHhhh
Q psy237           86 YQKSFGNYLVDVDGN-----HILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGD-WPQLLENVL  156 (236)
Q Consensus        86 i~~a~G~~l~D~dG~-----~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~e-lAE~Lae~L  156 (236)
                      -.+|+|+++||.+|+     .+|||..+.  ..+| .+|+|.+|+.++++....    .+... ..+ +.+.+++.+
T Consensus         9 ~~~~~~~~~~d~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~----~y~~~-~~~~lr~~la~~l   77 (390)
T 1d2f_A            9 DRHGTWCTQWDYVADRFGTADLLPFTISD--MDFA-TAPCIIEALNQRLMHGVF----GYSRW-KNDEFLAAIAHWF   77 (390)
T ss_dssp             ---------------------CEECCSSS--CSSC-CCHHHHHHHHHHHTTCCC----CCCCS-CCHHHHHHHHHHH
T ss_pred             cccCCCccchhhhccccCCCCeeEeeecC--CCCC-CCHHHHHHHHHHHhCCCC----CCCCC-ChHHHHHHHHHHH
Confidence            468999999999998     789996653  4677 789999999998864211    12222 445 666666644

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=95.64  E-value=0.0045  Score=54.21  Aligned_cols=41  Identities=29%  Similarity=0.466  Sum_probs=38.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      .++.|++.||.+|+.|+||.++...+.+||.+|.+.+|+.+
T Consensus        15 ~~~~g~~~~~~~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~   55 (375)
T 2eh6_A           15 VRGKGVYLYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKE   55 (375)
T ss_dssp             EEEEBTEEEETTCCEEEESSHHHHTCTTCBSCHHHHHHHHH
T ss_pred             EeeecCEEEeCCCCEEEEcCCcccccccCCCCHHHHHHHHH
Confidence            58999999999999999999999888999999999999987

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=95.63  E-value=0.00072  Score=60.01  Aligned_cols=64  Identities=11%  Similarity=0.185  Sum_probs=43.7

Q ss_pred             eeecccccEEEeCCCC-------EEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhh
Q psy237           85 DYQKSFGNYLVDVDGN-------HILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVL  156 (236)
Q Consensus        85 ~i~~a~G~~l~D~dG~-------~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~L  156 (236)
                      +..+|+|+++||.||+       .++||..|.  ..++ .+|+|.+++.+++.....    .+.. ...++.+.+++.+
T Consensus         9 ~~~~~~g~~~~d~~g~~~g~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~~~~----~y~~-~~~~l~~~la~~l   79 (399)
T 1c7n_A            9 ISRKNLGSLKWDLMYSQNPEVGNEVVPLSVAD--MEFK-NPPELIEGLKKYLDETVL----GYTG-PTEEYKKTVKKWM   79 (399)
T ss_dssp             CCCTTTTBHHHHHHHHHCTTCCTTCCCCCSSS--CSSC-CCHHHHHHHHHHHHHCCC----SSBC-CCHHHHHHHHHHH
T ss_pred             ccccCCCccccccchhhccccCCCceeeeecC--CCCC-CCHHHHHHHHHHHhcCCC----CCCC-CcHHHHHHHHHHH
Confidence            3558999999999984       789987664  4456 689999999998864211    1222 2445666666643

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=95.62  E-value=0.0052  Score=53.43  Aligned_cols=108  Identities=10%  Similarity=-0.073  Sum_probs=52.3

Q ss_pred             eecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCceee
Q psy237           86 YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSL  165 (236)
Q Consensus        86 i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~  165 (236)
                      +.+++|.+++|.+|+.+|||.++..  .++ .+|+|.+++.+++....     .++.....++.+.+++.    ..-.+ 
T Consensus         1 ~~~~~g~~~~~~~g~~~id~~~~~~--~~~-~~~~v~~a~~~~~~~~~-----~y~~~~~~~lr~~la~~----~~~~~-   67 (350)
T 3fkd_A            1 MIFGHGDEGITPLSSEIVNFSTTVW--TDG-DKDHLEKHLVENLNCIR-----HYPEPDAGTLRQMLAKR----NSVDN-   67 (350)
T ss_dssp             ---------------CCEECSCCSC--CCS-CCHHHHHHHHHTGGGGG-----SCCCTTCHHHHHHHHHH----TTCCG-
T ss_pred             CcccccchHhhhccccEEEccCCCC--CCC-CCHHHHHHHHHhHhHHh-----cCCCCcHHHHHHHHHHH----hCcCH-
Confidence            3578999999999999999988864  455 78999999998874322     22222223455555552    22111 


Q ss_pred             eeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          166 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       166 ~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                        + ...++++++++....+.=+. |=.+...-.+++....++..
T Consensus        68 --~-~i~~t~g~~~al~~~~~~l~-gd~Vi~~~p~~~~~~~~~~~  108 (350)
T 3fkd_A           68 --N-AILVTNGPTAAFYQIAQAFR-GSRSLIAIPSFAEYEDACRM  108 (350)
T ss_dssp             --G-GEEEESHHHHHHHHHHHHTT-TCEEEEEESCCHHHHHHHHH
T ss_pred             --H-HEEEcCCHHHHHHHHHHHHC-CCEEEEeCCCcHHHHHHHHH
Confidence              1 35666777777766544333 43333334455555555443

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=95.58  E-value=0.0011  Score=58.42  Aligned_cols=92  Identities=5%  Similarity=-0.033  Sum_probs=58.2

Q ss_pred             eeeecccccEEEeCCCCEE-----EeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhh
Q psy237           84 VDYQKSFGNYLVDVDGNHI-----LDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK  158 (236)
Q Consensus        84 ~~i~~a~G~~l~D~dG~~y-----LD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~  158 (236)
                      ++..+++|+++||.+|++|     |||..|.   +..+.+|+|.+|+.+++....+.    +. ....++.+.+++.+..
T Consensus        11 ~~~~~~~g~~~~d~~~~~~~~~~~i~l~~~~---~~~~~~~~v~~a~~~~~~~~~~~----y~-~~~~~~~~~l~~~l~~   82 (391)
T 4dq6_A           11 IVDRSNNFSSKWSEMEKKYGTNDLLPMWVAD---MDFKAAPCIIDSLKNRLEQEIYG----YT-TRPDSYNESIVNWLYR   82 (391)
T ss_dssp             CCCCTTTTBHHHHCHHHHHSCSCSEECCSSS---CSSCCCHHHHHHHHHHHTTCCCC----CB-CCCHHHHHHHHHHHHH
T ss_pred             ccccccCCceeeeecccccCCCCceeccccC---CCCCCCHHHHHHHHHHHhCCCCC----CC-CCCHHHHHHHHHHHHH
Confidence            4456899999999998766     8988763   44578999999999998763321    11 1224555666654443


Q ss_pred             ccCc-eeeeeeeeeeecceEEeccccchh
Q psy237          159 QSGS-VSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       159 ~ap~-~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+. ..  .+ ...++++++++....+.
T Consensus        83 ~~g~~~~--~~-~v~~~~g~~~a~~~~~~  108 (391)
T 4dq6_A           83 RHNWKIK--SE-WLIYSPGVIPAISLLIN  108 (391)
T ss_dssp             HHCCCCC--GG-GEEEESCHHHHHHHHHH
T ss_pred             HhCCCCc--HH-HeEEcCChHHHHHHHHH
Confidence            3320 00  01 35667777777765544

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=92.48  E-value=0.028  Score=48.66  Aligned_cols=86  Identities=19%  Similarity=0.108  Sum_probs=40.1

Q ss_pred             ceeeecccccEEEe-CCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccC
Q psy237           83 FVDYQKSFGNYLVD-VDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSG  161 (236)
Q Consensus        83 p~~i~~a~G~~l~D-~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap  161 (236)
                      ++++.+|.+.+.++ .+|+.+|||.+|..  .++ .+|+|.+|+.++++....     +++....++.+.+++.+ ...+
T Consensus         8 ~~~~~~g~~~~~~~~~~~~~~idl~~~~~--~~~-~~~~v~~a~~~~~~~~~~-----y~~~~~~~l~~~la~~~-~~~~   78 (361)
T 3ftb_A            8 GDLMIHGGDIYTEGVFKGRELLDYSSNIN--PLG-IPKSFLNNIDEGIKNLGV-----YPDVNYRRLNKSIENYL-KLKD   78 (361)
T ss_dssp             --------------------CEETTCCCC--TTC-SCHHHHTTHHHHHHGGGS-----CCCTTCHHHHHHHHHHH-TCCS
T ss_pred             CccccCCCCHHHHhhcCCCCEEEecCCCC--CCC-CCHHHHHHHHHHHHHhcC-----CCCccHHHHHHHHHHHh-CCCc
Confidence            34566666666666 49999999998865  344 589999999998876422     22333345556666532 1111


Q ss_pred             ceeeeeeeeeeecceEEeccccc
Q psy237          162 SVSLFVDYQKSFGNYLVDVDGNH  184 (236)
Q Consensus       162 ~~~~~i~~~~~~G~sgsDA~g~a  184 (236)
                            + ...++++++++....
T Consensus        79 ------~-~i~~~~g~t~al~~~   94 (361)
T 3ftb_A           79 ------I-GIVLGNGASEIIELS   94 (361)
T ss_dssp             ------C-EEEEESSHHHHHHHH
T ss_pred             ------c-eEEEcCCHHHHHHHH
Confidence                  1 245566666665543

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=92.16  E-value=0.091  Score=46.26  Aligned_cols=38  Identities=24%  Similarity=0.419  Sum_probs=34.4

Q ss_pred             eeeecceEEeccccchhhhhccccccccCC-CCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh-~~p~i~~A~~~  210 (236)
                      ..+.|++.+|.+|+.|+||.++   +.+|| .+|++.+|+.+
T Consensus        32 ~~~~g~~~~~~~g~~~id~~~~---~~~g~~~~~~v~~a~~~   70 (401)
T 1fc4_A           32 TSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKA   70 (401)
T ss_dssp             CSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHH
T ss_pred             ccCCCceEEeeCCccEEEeecc---CcccccCCHHHHHHHHH
Confidence            5889999999999999999998   46997 89999999987

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=91.14  E-value=0.13  Score=44.96  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             eeeecceEEeccccchhhhhccccccccC-CCCHHHHHhhhc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLG-YNHPALLKIFDD  210 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lG-h~~p~i~~A~~~  210 (236)
                      +.+.|.+++| +|+.|+||.++   +.+| |++|.+.+++.+
T Consensus        31 ~~~~g~~v~~-~g~~~id~~~~---~~~g~~~~~~v~~a~~~   68 (399)
T 3tqx_A           31 TSPQNAEIKV-GEKEVLNFCAN---NYLGLADHPALIKTAQT   68 (399)
T ss_dssp             CSCSSSEEEE-TTEEEEECSSC---CTTSCTTCHHHHHHHHH
T ss_pred             cCCCCceEee-CCeeEEEeecc---CcccccCCHHHHHHHHH
Confidence            4789999999 99999999998   6789 899999999987

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=90.08  E-value=0.05  Score=47.02  Aligned_cols=41  Identities=12%  Similarity=0.113  Sum_probs=30.9

Q ss_pred             cccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           88 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        88 ~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ..+|.++++.+|+.+|||.++.  ..++ .+|+|++|+.++++.
T Consensus         4 ~~~~~~~~~~~~~~~i~l~~~~--~~~~-~~~~v~~a~~~~~~~   44 (354)
T 3ly1_A            4 QPESAAFTAPSTDNPIRINFNE--NPLG-MSPKAQAAARDAVVK   44 (354)
T ss_dssp             -----CCCCCCSSSCEECSSCC--CSSC-CCHHHHHHHHHTGGG
T ss_pred             CcccccccCCCCCceEEccCCC--CCCC-CCHHHHHHHHHHHhh
Confidence            4568889999999999999876  3444 789999999998875

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=90.05  E-value=0.035  Score=48.76  Aligned_cols=48  Identities=2%  Similarity=-0.135  Sum_probs=38.3

Q ss_pred             cceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           82 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        82 ~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      .++....+.+..++|.+|+.+|||.+|..  .++ .+|+|.+|+.++++..
T Consensus        12 ~~~~~~~~~~~~~~~~~g~~~i~l~~~~~--~~~-~~~~v~~a~~~~~~~~   59 (396)
T 3jtx_A           12 YPFARLHEAMQGISAPEGMEAVPLHIGEP--KHP-TPKVITDALTASLHEL   59 (396)
T ss_dssp             CHHHHHHHHTTTCCCCTTCCCEECSCCSC--CSC-CCHHHHHHHHHTGGGG
T ss_pred             ChHHHHHHHHHhhhhccCCCeEEeCCcCC--CCC-CCHHHHHHHHHHhhhc
Confidence            44555677888889999999999999874  344 6899999999988643

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=89.11  E-value=0.14  Score=45.91  Aligned_cols=36  Identities=14%  Similarity=0.022  Sum_probs=32.7

Q ss_pred             eeecceEEeccccchhhhhccccccccC-CCCHHHHHhhhc
Q psy237          171 KSFGNYLVDVDGNHILDVYTQISSVPLG-YNHPALLKIFDD  210 (236)
Q Consensus       171 ~~~G~sgsDA~g~a~lD~~sg~~~~~lG-h~~p~i~~A~~~  210 (236)
                      .+.|++.+| +|+.++||.++.   ++| |.+|+|.+|+.+
T Consensus        53 ~~~g~~~~~-~g~~~id~~~~~---~lg~~~~~~v~~a~~~   89 (427)
T 2w8t_A           53 VKSPTEAVI-RGKDTILLGTYN---YMGMTFDPDVIAAGKE   89 (427)
T ss_dssp             EEETTEEEE-TTEEEEECSCCC---TTCGGGCHHHHHHHHH
T ss_pred             cCCCceEee-CCceEEEEECcc---cccCCCCHHHHHHHHH
Confidence            789999999 999999999983   589 799999999987

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=88.66  E-value=0.15  Score=44.36  Aligned_cols=34  Identities=21%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             EeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           95 VDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        95 ~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      ++.||+++|||.+|.  .++| .+|+|.+++.++++.
T Consensus        19 ~~~~~~~~idl~~~~--~~~~-~~~~v~~a~~~~~~~   52 (364)
T 1lc5_A           19 LGISPDQLLDFSANI--NPLG-MPVSVKRALIDNLDC   52 (364)
T ss_dssp             HTSCGGGSEECSSCC--CTTC-CCHHHHHHHHHTGGG
T ss_pred             cCCCccceEEecccc--CCCC-CCHHHHHHHHHHHHH
Confidence            456899999998876  4578 789999999998865

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=88.07  E-value=0.26  Score=43.34  Aligned_cols=55  Identities=11%  Similarity=-0.009  Sum_probs=36.2

Q ss_pred             CCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCC-CCCChhhhhHhhh
Q psy237           99 GNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF-PSGDWPQLLENVL  156 (236)
Q Consensus        99 G~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~-~~~elAE~Lae~L  156 (236)
                      |+.+|||.+|... ..||.+|+|.+++.+++++..... . +... ...++.+.+++.+
T Consensus        33 g~~~idl~~g~~~-~~~~~~~~v~~a~~~~~~~~~~~~-~-y~~~~~~~~l~~~la~~~   88 (407)
T 2zc0_A           33 GVKLISLAAGDPD-PELIPRAVLGEIAKEVLEKEPKSV-M-YTPANGIPELREELAAFL   88 (407)
T ss_dssp             SCCCEECCSCCCC-TTTSCHHHHHHHHHHHHHHCGGGG-S-CCCTTCCHHHHHHHHHHH
T ss_pred             CCceEeCCCCCCC-chhCCHHHHHHHHHHHHhhccccc-c-CCCCCCCHHHHHHHHHHH
Confidence            7889999888764 358999999999999987643111 1 2221 2345566666644

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=85.28  E-value=0.49  Score=41.55  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=24.9

Q ss_pred             CCCEEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           98 DGNHILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        98 dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      ||++|+||.++.. ..+|+ +|+|.+|+.+++++.
T Consensus        44 ~g~~~i~~~~~~~-~~~~~-~p~v~~a~~~~~~~~   76 (401)
T 2bwn_A           44 GKQDITVWCGNDY-LGMGQ-HPVVLAAMHEALEAV   76 (401)
T ss_dssp             CEEEEEECSCSCT-TSGGG-CHHHHHHHHHHHHHH
T ss_pred             CCCcEEEeeCCCc-ccCCC-CHHHHHHHHHHHHHc
Confidence            7899999987532 22444 789999999998764

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=82.16  E-value=0.16  Score=44.64  Aligned_cols=47  Identities=11%  Similarity=0.000  Sum_probs=29.9

Q ss_pred             eeeecccccEEEeCCCC---EEEeccCCcccccCCCChHHHHHHhhcccccc
Q psy237           84 VDYQKSFGNYLVDVDGN---HILDVYTQISSVPLGYNHPALLKIFDDPATVK  132 (236)
Q Consensus        84 ~~i~~a~G~~l~D~dG~---~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~  132 (236)
                      -++.+++|.++++.+++   ++|||.+|... +++ .+|+|++|+.++++..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~id~~~g~~~-~~~-~~~~v~~a~~~~~~~~   69 (407)
T 3nra_A           20 EVRQSAAGLEALIRGAPIEGRPVDFSHGDVD-AHE-PTPGAFDLFSAGVQSG   69 (407)
T ss_dssp             -------CCTTTCCSCCCCSCCEETTSCCTT-TSC-CCTTHHHHHHHHHHHT
T ss_pred             HHHHHhhhhHHHhhcCCCCCceeeecCcCCC-CCC-CcHHHHHHHHHHHhcC
Confidence            35778888888766666   69999877432 333 7899999999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	236
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	7e-27
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	4e-11
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	2e-08
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	1e-07
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	3e-08
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	2e-07
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	4e-08
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	1e-07
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	4e-08
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	5e-08
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	1e-07
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	1e-07
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-07
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	1e-07
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	2e-06
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	3e-06

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  105 bits (262), Expect = 7e-27
 Identities = 53/112 (47%), Positives = 81/112 (72%)

Query: 49  EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQ 108
           +   P + TEVPGP+++ L ++L+ +Q + +V  F +Y++S GNYLVDVDGN +LD+Y+Q
Sbjct: 2   DYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQ 61

Query: 109 ISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQS 160
           ISS+P+GY+HPAL+K+   P  V TF+NRPALG+ P  ++ + L   LL  +
Sbjct: 62  ISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVA 113

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 59.7 bits (143), Expect = 4e-11
 Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 6/75 (8%)

Query: 159 QSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSD 218
            + +V  F +Y++S GNYLVDVDGN +LD+Y+QISS+P+GY+HPAL+K+   P       
Sbjct: 29  NAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQ------ 82

Query: 219 DKTSHIPTFARTEPP 233
           + ++ I   A    P
Sbjct: 83  NVSTFINRPALGILP 97

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 2e-08
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 62  PQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPAL 121
           P +  + ++  +     +  L V  ++  G YL DV+G    D  + IS+V  G+ HP +
Sbjct: 3   PTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKI 62

Query: 122 LK 123
           + 
Sbjct: 63  VN 64

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
           +  G YL DV+G    D  + IS+V  G+ HP ++ 
Sbjct: 29  RGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVN 64

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 51.2 bits (121), Expect = 3e-08
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFART 230
           ++ G+++ D DG  ILD  +   S  LG+ HP ++ +  + A       K  H+ +   +
Sbjct: 29  RAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYA------GKLDHLFSEMLS 82

Query: 231 EP 232
            P
Sbjct: 83  RP 84

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 88  KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
           ++ G+++ D DG  ILD  +   S  LG+ HP ++ 
Sbjct: 29  RAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVS 64

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 50.6 bits (120), Expect = 4e-08
 Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 82  LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG 141
           +F D  ++    + DV+G   LD    I+ +  G+ HP ++   +      +      L 
Sbjct: 24  IFAD--RAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA 81

Query: 142 VFPSGDWPQLL 152
             P  +  +++
Sbjct: 82  YEPYLELCEIM 92

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 165 LFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHI 224
           +F D  ++    + DV+G   LD    I+ +  G+ HP ++        V+    K SH 
Sbjct: 24  IFAD--RAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVA------AVEAQLKKLSHT 75

Query: 225 PTFARTEPP 233
                   P
Sbjct: 76  CFQVLAYEP 84

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score = 50.8 bits (120), Expect = 4e-08
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 174 GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKCSDDKTSHIPTFARTEPP 233
           G  L+  DG  ++D  +   +   GYNHP L              D  SH+     T  P
Sbjct: 34  GCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQI------DAMSHVMFGGITHAP 87

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score = 50.4 bits (119), Expect = 5e-08
 Identities = 14/62 (22%), Positives = 24/62 (38%)

Query: 91  GNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQ 150
           G  L+  DG  ++D  +   +   GYNHP L           + V    +   P+ +  +
Sbjct: 34  GCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCR 93

Query: 151 LL 152
            L
Sbjct: 94  KL 95

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 88  KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
           +  G  + D +GN  +D         LG+ +P +++
Sbjct: 25  RGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVE 60

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
           +  G  + D +GN  +D         LG+ +P +++
Sbjct: 25  RGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVE 60

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 88  KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
           ++ G ++ DV+     D  +  SSV  G+ HP +L 
Sbjct: 27  RAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILN 62

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 171 KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 206
           ++ G ++ DV+     D  +  SSV  G+ HP +L 
Sbjct: 27  RAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILN 62

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 17/72 (23%)

Query: 135 VNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISS 194
           V+ P       G  P + +                 +    Y  DVDGN  +D       
Sbjct: 21  VSSPVRAFKSVGGQPIVFD-----------------RVKDAYAWDVDGNRYIDYVGTWGP 63

Query: 195 VPLGYNHPALLK 206
              G+ HP +++
Sbjct: 64  AICGHAHPEVIE 75

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 88  KSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLK 123
           +    Y  DVDGN  +D          G+ HP +++
Sbjct: 40  RVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIE 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	236
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.91
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.83
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.8
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.77
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.77
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.76
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.71
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.7
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	98.85
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	98.81
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	98.77
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	98.76
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	98.76
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	98.71
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	98.68
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.66
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	98.28
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	97.26
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	93.6
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	92.6

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.91  E-value=1e-25  Score=209.46  Aligned_cols=134  Identities=41%  Similarity=0.711  Sum_probs=119.2

Q ss_pred             CCCCCcccccCCChhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhcc
Q psy237           49 EPSHPQLVTEVPGPQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDP  128 (236)
Q Consensus        49 ~~~~~~v~~~~pgp~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q  128 (236)
                      +...|+++|++|||+|++++++..+++.+...++|++++||+|+||||+|||+||||.+|+++++|||+||+|++|+++|
T Consensus         2 ~~~~~~~~~~~pgp~s~~l~~~~~~~~~~~~~~~p~~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q   81 (461)
T d1ohwa_           2 DYDGPLMKTEVPGPRSRELMKQLNIIQNAEAVHFFCNYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQP   81 (461)
T ss_dssp             CCSSCBCCSCSSCHHHHHHHHHHHHHSCCTTCCCCBCTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCG
T ss_pred             CCCCCEEecCCCChHHHHHHHHHHHhcCCCCCCCCeEEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHH
Confidence            46778999999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          129 ATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +++..+.+...+.+.+...++++|++.+....+...   + ++.|.++|+||+|.+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~---~-~v~f~~sGseAve~Aik  135 (461)
T d1ohwa_          82 QNVSTFINRPALGILPPENFVEKLRESLLSVAPKGM---S-QLITMACGSCSNENAFK  135 (461)
T ss_dssp             GGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTC---C-EEEEESSHHHHHHHHHH
T ss_pred             HhhhhhcccccccccchHHHHHHHHHHHHhhhccCc---c-eeeeecchhhhhHHHHH
Confidence            999888777777778888889989887766655432   2 68899999999998775

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.5e-22  Score=184.16  Aligned_cols=117  Identities=15%  Similarity=0.068  Sum_probs=97.9

Q ss_pred             hHHHHHHHHhccccC-CccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCC
Q psy237           63 QTKALKQKLSQLQQS-GSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        63 ~s~~l~~~~~~~~~~-~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      +|++|++|+++++++ ...++|++++||+|+||||+|||+||||++|+|+++|||+||+|++|+++|++++.+.+...+.
T Consensus         2 ~~~~l~~r~~~~~~~g~~~~~P~~~~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~   81 (425)
T d1sffa_           2 SNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLA   81 (425)
T ss_dssp             CHHHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEE
T ss_pred             chHHHHHHHHHhcCCCCCCCCCceEEEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccccccc
Confidence            478999999999886 4567899999999999999999999999999999999999999999999999998877655555


Q ss_pred             CCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +++..++++++.+    ..|+..   ..++++.++|+|+++.+++
T Consensus        82 ~~~~~~la~~l~~----~~p~~~---~~~v~f~~sGseA~e~Alk  119 (425)
T d1sffa_          82 YEPYLELCEIMNQ----KVPGDF---AKKTLLVTTGSEAVENAVK  119 (425)
T ss_dssp             CHHHHHHHHHHHH----HSSCSS---CEEEEEESSHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHh----hhhhcc---cceeeeeccccchhhhHHH
Confidence            6566666666655    455432   1258889999999999877

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-21  Score=177.65  Aligned_cols=114  Identities=19%  Similarity=0.249  Sum_probs=92.3

Q ss_pred             hhHHHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCC
Q psy237           62 PQTKALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALG  141 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~  141 (236)
                      |+|++++++.++|.+..+.|+|++|+||+|+||||+|||+||||++|+|+++|||+||+|++|+++|++++.+.+. .+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~p~P~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~-~~~   81 (404)
T d2byla1           3 PTSDDIFEREYKYGAHNAHPLPVALERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSR-AFY   81 (404)
T ss_dssp             CCHHHHHHHHHHHBCSCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCT-TEE
T ss_pred             CcHHHHHHHHHHhccCCCCCCCceEEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCccc-ccc
Confidence            6789999999999777778999999999999999999999999999999999999999999999999999876653 222


Q ss_pred             CCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          142 VFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       142 ~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +.....+++++.+    .. +..     ++.+.++|+|+++.+++
T Consensus        82 ~~~~~~~~~~~~~----~~-~~~-----~v~~~~sGseA~e~Aik  116 (404)
T d2byla1          82 NNVLGEYEEYITK----LF-NYH-----KVLPMNTGVEAGETACK  116 (404)
T ss_dssp             ESSHHHHHHHHHH----HH-TCS-----EEEEESSHHHHHHHHHH
T ss_pred             cchHHHHHHhhhh----cc-ccc-----ccccccCccccchhHHH
Confidence            3333233333333    22 222     47889999999999876

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.77  E-value=1.4e-20  Score=172.57  Aligned_cols=112  Identities=16%  Similarity=0.160  Sum_probs=90.7

Q ss_pred             HHHHHHHhccccCCcccc-ceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCC
Q psy237           65 KALKQKLSQLQQSGSVSL-FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVF  143 (236)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~-p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~  143 (236)
                      +.+.++.++++..+...+ |++|+||+|+||||+|||+||||.+|+|+++|||+||+|++|+++|++++.|++. .+.+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~-~~~~~   83 (431)
T d1zoda1           5 ATFWRNARHHLVRYGGTFEPMIIERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLFS-EMLSR   83 (431)
T ss_dssp             HHHHHHHHHHCCCCSSCCCSSCCCEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT-TCCCH
T ss_pred             HHHHHhhHHHhhccCCCCCCCeEEEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcccccc-ccccH
Confidence            467777777877655555 8999999999999999999999999999999999999999999999999887653 34455


Q ss_pred             CCCChhhhhHhhhhhccC-ceeeeeeeeeeecceEEeccccchh
Q psy237          144 PSGDWPQLLENVLLKQSG-SVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       144 ~~~elAE~Lae~Ll~~ap-~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      +..+++++|.+    ..+ +..     ++.|.++|+||+|.+++
T Consensus        84 ~~~~la~~L~~----~~~~~~~-----~v~f~~sGseA~e~Alk  118 (431)
T d1zoda1          84 PVVDLATRLAN----ITPPGLD-----RALLLSTGAESNEAAIR  118 (431)
T ss_dssp             HHHHHHHHHHH----HSCTTCC-----EEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----hCCcccc-----eeeecccccchHHHHHH
Confidence            55555555554    344 333     58899999999999877

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.77  E-value=9e-20  Score=167.28  Aligned_cols=114  Identities=15%  Similarity=0.139  Sum_probs=90.3

Q ss_pred             hhHHHHHHHHhccccCC----------ccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccc
Q psy237           62 PQTKALKQKLSQLQQSG----------SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATV  131 (236)
Q Consensus        62 p~s~~l~~~~~~~~~~~----------~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~  131 (236)
                      .+|+++++++++++++.          ....|++++||+|+||||+|||+||||.+|+++++|||+||+|++|+++|+++
T Consensus         4 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~P~~i~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~   83 (427)
T d2gsaa_           4 IKSDEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK   83 (427)
T ss_dssp             HHHHHHHHHHHHHSGGGSSSGGGCCTTTSSCCCCEEEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHhhcCCCCCCCccccccCCCCCcEEEEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHh
Confidence            68999999999998752          23468999999999999999999999999999999999999999999999998


Q ss_pred             cccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchhh
Q psy237          132 KTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILD  187 (236)
Q Consensus       132 ~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~lD  187 (236)
                      +.+...       .....+.+++.+....+...     ++.|.++|+||+|.+++-
T Consensus        84 ~~~~~~-------~~~~~~~la~~~~~~~~~~~-----~v~f~~sGseA~e~Alk~  127 (427)
T d2gsaa_          84 GTSFGA-------PCALENVLAEMVNDAVPSIE-----MVRFVNSGTEACMAVLRL  127 (427)
T ss_dssp             CSCCSS-------CCHHHHHHHHHHHHHSTTCS-----EEEEESSHHHHHHHHHHH
T ss_pred             cCcccc-------chhHHHHHHHHHHhhCCccc-----cccccCCcHHHHHHHHHH
Confidence            654321       12233444443433445433     478899999999999873

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=9.5e-20  Score=165.38  Aligned_cols=113  Identities=14%  Similarity=0.084  Sum_probs=90.0

Q ss_pred             HHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCC
Q psy237           65 KALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFP  144 (236)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~  144 (236)
                      ++|++..+++..+.+.++|++|+||+|+||||.|||+||||.+|+++++|||+||+|++|+++|++++.+.+. .+.+++
T Consensus         2 ~~~~~~~~~~~~~~y~~~p~~i~ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~-~~~~~~   80 (387)
T d1vefa1           2 RALLEAEKTLDSGVYNKHDLLIVRGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQ-TLPTPM   80 (387)
T ss_dssp             HHHHHHHHHHBCSCSCCCSSCEEEEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCT-TSCCHH
T ss_pred             hhHHhhhhhccCCCCCCCCceEEEeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhccccc-ccCCch
Confidence            6788888888888888899999999999999999999999999999999999999999999999998765442 233333


Q ss_pred             CCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          145 SGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       145 ~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..+++++    +....+...    .++.++++|+|+++.+++
T Consensus        81 ~~~la~~----l~~~~~~~~----~~v~f~~sGseA~e~Aik  114 (387)
T d1vefa1          81 RGEFYRT----LTAILPPEL----NRVFPVNSGTEANEAALK  114 (387)
T ss_dssp             HHHHHHH----HHHTSCTTE----EEEEEESSHHHHHHHHHH
T ss_pred             HHHHHHH----hhhhccccc----eeeccccCchHHHHHHHH
Confidence            3333333    333344321    258999999999999877

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=7.3e-19  Score=161.50  Aligned_cols=99  Identities=16%  Similarity=0.074  Sum_probs=78.3

Q ss_pred             ccccee-eecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhh
Q psy237           80 VSLFVD-YQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLK  158 (236)
Q Consensus        80 ~~~p~~-i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~  158 (236)
                      .++|+. |+||+|+||||+|||+||||.+|+++++|||+||+|++|+++|++++.++....+.+++..++++++.+    
T Consensus        22 ~~~p~~~i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~----   97 (429)
T d1s0aa_          22 SPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVA----   97 (429)
T ss_dssp             SCCCCEEEEEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHHHHHHHHHHH----
T ss_pred             CCCCCcceEEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHHHHHHHHHHh----
Confidence            456664 899999999999999999999999999999999999999999999988766545555444445554444    


Q ss_pred             ccCceeeeeeeeeeecceEEeccccchh
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      ..|...   + ++.+.++|+|++|.+++
T Consensus        98 ~~~~~~---~-~v~f~~sGseA~e~A~k  121 (429)
T d1s0aa_          98 MTPQPL---E-CVFLADSGSVAVEVAMK  121 (429)
T ss_dssp             HSCTTC---C-EEEEESSHHHHHHHHHH
T ss_pred             hhccCc---c-eeeeccccccchhhhhh
Confidence            344322   2 57889999999998764

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.70  E-value=1.1e-18  Score=158.69  Aligned_cols=111  Identities=16%  Similarity=0.107  Sum_probs=87.2

Q ss_pred             HHHHHHHhccccCCccccceeeecccccEEEeCCCCEEEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCC
Q psy237           65 KALKQKLSQLQQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFP  144 (236)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~  144 (236)
                      +++++..++|....+.|+|++|+||+|+||||.|||+||||++|+|+++|||+||+|++|+++|++++.+++.. +.+  
T Consensus         4 ~~~~~~~~~~~~~~y~p~P~~i~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~-~~~--   80 (404)
T d1z7da1           4 EDYINNELKYGAHNYDPIPVVLKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA-FFS--   80 (404)
T ss_dssp             HHHHHHHHHHBCCCCCCEEEEEEEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT-SEE--
T ss_pred             HHHHHHHHhcCCCCCCCCCceEEEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccc-cch--
Confidence            67788888888877889999999999999999999999999999999999999999999999999998766532 212  


Q ss_pred             CCChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchh
Q psy237          145 SGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       145 ~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                        ...+.+++.+. ..++..     ++.+.++|+|+++.+++
T Consensus        81 --~~~~~~~~~~~-~~~~~~-----~v~~~~sgs~a~~~a~k  114 (404)
T d1z7da1          81 --VPLGICERYLT-NLLGYD-----KVLMMNTGAEANETAYK  114 (404)
T ss_dssp             --HHHHHHHHHHH-HHHTCS-----EEEEESSHHHHHHHHHH
T ss_pred             --HHHHHHHHhhh-hccccc-----eeeeeccccchHHHHHH
Confidence              22333443222 233333     36788999999998764

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.4e-10  Score=103.09  Aligned_cols=69  Identities=22%  Similarity=0.290  Sum_probs=52.4

Q ss_pred             ChhhhhHhhhhhccCceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          147 DWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       147 elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      ++.++..++....+.+++++  +++++|+++||.+|++||||.+++++++|||+||+|++|+.+  +.+.|.+
T Consensus         7 ~~~~~~~~~~~~~~~p~P~~--i~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~   77 (404)
T d2byla1           7 DIFEREYKYGAHNAHPLPVA--LERGKGIYLWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTS   77 (404)
T ss_dssp             HHHHHHHHHBCSCCCCEEEE--EEEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHhccCCCCCCCce--EEEeecCEEEECCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcc
Confidence            34444444433233334544  459999999999999999999999999999999999999998  4455554

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=5.6e-10  Score=101.00  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=49.6

Q ss_pred             eeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--CcccccccCCCCCcc
Q psy237          163 VSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSDDKTSHIP  225 (236)
Q Consensus       163 ~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~~~~~~~~  225 (236)
                      +|+++  ++++|+++||.+|++||||.+|++++++||+||+|++|+++  +++.|.+.....+.+
T Consensus        22 ~P~~~--~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~~~~~~   84 (425)
T d1sffa_          22 HPIFA--DRAENCRVWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEP   84 (425)
T ss_dssp             EEEEE--EEEEBTEEEETTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTTEECHH
T ss_pred             CCceE--EEEecCEEEeCCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCcccccccCcH
Confidence            35444  59999999999999999999999999999999999999998  445565544444444

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.77  E-value=1.2e-09  Score=98.24  Aligned_cols=62  Identities=21%  Similarity=0.363  Sum_probs=49.5

Q ss_pred             hhhhhccCceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          154 NVLLKQSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       154 e~Ll~~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      ++..+.+.++|+++  +++.|.++||.+|++||||.+|+++++|||+||+|++|+++  +.+.+++
T Consensus        12 ~~~~~~y~p~P~~i--~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~   75 (404)
T d1z7da1          12 KYGAHNYDPIPVVL--KRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICS   75 (404)
T ss_dssp             HHBCCCCCCEEEEE--EEEEBTEEEETTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCC
T ss_pred             hcCCCCCCCCCceE--EEeecCEEEECCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcc
Confidence            34444444456544  59999999999999999999999999999999999999998  3344443

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=9e-10  Score=98.77  Aligned_cols=52  Identities=19%  Similarity=0.321  Sum_probs=45.5

Q ss_pred             ccCceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          159 QSGSVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       159 ~ap~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      +++++++++.  +++|+++||.+|++||||.+|++++++||+||+|++|+.++.
T Consensus        15 ~y~~~p~~i~--ra~G~~l~d~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~   66 (387)
T d1vefa1          15 VYNKHDLLIV--RGQGARVWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQA   66 (387)
T ss_dssp             CSCCCSSCEE--EEEBTEEEETTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHH
T ss_pred             CCCCCCceEE--EeEcCEEEECCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHH
Confidence            3455566544  999999999999999999999999999999999999999833

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=98.76  E-value=9.2e-10  Score=99.64  Aligned_cols=67  Identities=21%  Similarity=0.380  Sum_probs=52.1

Q ss_pred             hhhhHhhhhhccCce-eeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--Ccccccc
Q psy237          149 PQLLENVLLKQSGSV-SLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCS  217 (236)
Q Consensus       149 AE~Lae~Ll~~ap~~-~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~  217 (236)
                      .+...+++.+..+.+ |+++  ++++|+++||.+|++||||.+|++++++||+||+|++|+++  +++.|++
T Consensus         8 ~~~~~~~~~~~~~~~~P~~i--~~a~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~   77 (431)
T d1zoda1           8 WRNARHHLVRYGGTFEPMII--ERAKGSFVYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF   77 (431)
T ss_dssp             HHHHHHHCCCCSSCCCSSCC--CEEEBTEEECTTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCCCCC
T ss_pred             HHhhHHHhhccCCCCCCCeE--EEeecCEEEECCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhccccc
Confidence            344444454433333 4443  49999999999999999999999999999999999999999  4466654

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.71  E-value=1.3e-09  Score=99.71  Aligned_cols=45  Identities=62%  Similarity=1.188  Sum_probs=41.7

Q ss_pred             eeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhcCc
Q psy237          168 DYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDDPA  212 (236)
Q Consensus       168 ~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~~~  212 (236)
                      .++++.|+++||.+|++||||.+|++++++||+||+|++|+.++.
T Consensus        38 ~~~~g~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~   82 (461)
T d1ohwa_          38 NYEESRGNYLVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQ   82 (461)
T ss_dssp             CTTTCBBTEEEBTTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGG
T ss_pred             EEEEeecCEEEECCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHH
Confidence            346999999999999999999999999999999999999999843

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=98.68  E-value=3.9e-09  Score=95.56  Aligned_cols=47  Identities=21%  Similarity=0.356  Sum_probs=42.8

Q ss_pred             ceeeeeeeeeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc
Q psy237          162 SVSLFVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD  210 (236)
Q Consensus       162 ~~~~~i~~~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~  210 (236)
                      +.|+++  .++.|+++||.+|++||||.++++++++||+||+|++|+++
T Consensus        33 ~~P~~i--~~a~G~~l~D~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~   79 (427)
T d2gsaa_          33 GQPIVF--DRVKDAYAWDVDGNRYIDYVGTWGPAICGHAHPEVIEALKV   79 (427)
T ss_dssp             SCCCCE--EEEEBTEEEETTSCEEEESSGGGTTTTTCBTCHHHHHHHHH
T ss_pred             CCCcEE--EEeecCEEEECCCCEEEEechhHHHHhccCCcHHHHHHHHH
Confidence            345544  49999999999999999999999999999999999999998

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.3e-09  Score=97.37  Aligned_cols=57  Identities=25%  Similarity=0.314  Sum_probs=48.7

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCCCHHHHHhhhc--CcccccccCCCCCccc
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYNHPALLKIFDD--PATVKCSDDKTSHIPT  226 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~~p~i~~A~~~--~~~~~~~~~~~~~~~~  226 (236)
                      ++++|+++||.+|++||||.+|++++++||+||+|++|+++  +++.|+......+.+.
T Consensus        30 ~~~~G~~l~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~~~~~~~   88 (429)
T d1s0aa_          30 VSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPA   88 (429)
T ss_dssp             EEEEBTEEEETTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSSEECHHH
T ss_pred             EEeECCEEEECCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCCccchHH
Confidence            58999999999999999999999999999999999999998  4466665555555444

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=98.28  E-value=2.6e-07  Score=82.67  Aligned_cols=95  Identities=17%  Similarity=0.133  Sum_probs=58.7

Q ss_pred             ceeeecccccEEEeCCCCEEEeccCCcccccCCCC-hHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccC
Q psy237           83 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGYN-HPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSG  161 (236)
Q Consensus        83 p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh~-hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap  161 (236)
                      ..++.+++|+++||.||++||||.+.-   =||++ ||+|++|+++++++........-...-..+..+.+++.+....+
T Consensus        28 ~~~i~~~~g~~v~~~dG~~~l~f~s~d---YLGl~~hp~v~~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g  104 (401)
T d1fc4a_          28 ERIITSAQQADITVADGSHVINFCANN---YLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLG  104 (401)
T ss_dssp             CCCBCSCSSSEEEBTTSCEEEECCCSC---TTSCTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHT
T ss_pred             ceeccCCCCCeEEecCCCEEEEEEccc---cccccCCHHHHHHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhc
Confidence            347899999999999999999986541   26775 99999999999987643221110000012334445544443443


Q ss_pred             ceeeeeeeeeeecceEEeccccchh
Q psy237          162 SVSLFVDYQKSFGNYLVDVDGNHIL  186 (236)
Q Consensus       162 ~~~~~i~~~~~~G~sgsDA~g~a~l  186 (236)
                      . +     .....++|+.++...+.
T Consensus       105 ~-e-----~al~~~SG~~An~~~i~  123 (401)
T d1fc4a_         105 M-E-----DAILYSSCFDANGGLFE  123 (401)
T ss_dssp             C-S-----EEEEESCHHHHHHTTHH
T ss_pred             C-C-----ceEEecchhhhhHHHHH
Confidence            2 1     14455666666655443

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00016  Score=63.49  Aligned_cols=47  Identities=21%  Similarity=0.395  Sum_probs=38.0

Q ss_pred             ceeeecccccEEEeCCCCEEEeccCCcccccCCC-ChHHHHHHhhccccccc
Q psy237           83 FVDYQKSFGNYLVDVDGNHILDVYTQISSVPLGY-NHPALLKIFDDPATVKT  133 (236)
Q Consensus        83 p~~i~~a~G~~l~D~dG~~yLD~~~g~~~~~lGh-~hP~V~~Ai~~q~~~~~  133 (236)
                      +..+.+++|.++. .||++||||.+. ..  ||. .||+|++++.+++++..
T Consensus        22 ~~~~~~~~g~~i~-~~g~~~l~f~s~-dY--LGl~~~p~v~~a~~~a~~~~G   69 (383)
T d1bs0a_          22 RYPVAQGAGRWLV-ADDRQYLNFSSN-DY--LGLSHHPQIIRAWQQGAEQFG   69 (383)
T ss_dssp             CCCCSBCSSSEEE-ETTEEEEECSCC-CT--TSGGGCHHHHHHHHHHHHHHC
T ss_pred             ccccCCCCCCeEE-ECCeEEEEEEcc-cc--cccCCCHHHHHHHHHHHHHhC
Confidence            3458999999996 899999997664 22  565 39999999999999854

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.02  Score=49.97  Aligned_cols=39  Identities=21%  Similarity=0.359  Sum_probs=33.3

Q ss_pred             eeeecceEEeccccchhhhhccccccccCCC-CHHHHHhhhcC
Q psy237          170 QKSFGNYLVDVDGNHILDVYTQISSVPLGYN-HPALLKIFDDP  211 (236)
Q Consensus       170 ~~~~G~sgsDA~g~a~lD~~sg~~~~~lGh~-~p~i~~A~~~~  211 (236)
                      ....|..+|+.||++||||.|.   ..||+. ||+|++|+.+.
T Consensus        32 ~~~~g~~v~~~dG~~~l~f~s~---dYLGl~~hp~v~~a~~~a   71 (401)
T d1fc4a_          32 TSAQQADITVADGSHVINFCAN---NYLGLANHPDLIAAAKAG   71 (401)
T ss_dssp             CSCSSSEEEBTTSCEEEECCCS---CTTSCTTCHHHHHHHHHH
T ss_pred             cCCCCCeEEecCCCEEEEEEcc---ccccccCCHHHHHHHHHH
Confidence            4788999999999999999663   568886 99999999883

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=92.60  E-value=0.017  Score=46.52  Aligned_cols=69  Identities=4%  Similarity=-0.026  Sum_probs=42.1

Q ss_pred             EEeccCCcccccCCCChHHHHHHhhccccccccccCCCCCCCCCCChhhhhHhhhhhccCceeeeeeeeeeecceEEecc
Q psy237          102 ILDVYTQISSVPLGYNHPALLKIFDDPATVKTFVNRPALGVFPSGDWPQLLENVLLKQSGSVSLFVDYQKSFGNYLVDVD  181 (236)
Q Consensus       102 yLD~~~g~~~~~lGh~hP~V~~Ai~~q~~~~~~~~~~~~~~~~~~elAE~Lae~Ll~~ap~~~~~i~~~~~~G~sgsDA~  181 (236)
                      +|||.|    .|.++.||+|++|++++...  +.  ..+.   .....+++++.+.+.+.. +    ....|.++|++++
T Consensus         4 ~~~f~s----~n~~g~~P~v~~A~~~a~~~--~~--~~~~---~~~~~~~l~~~la~~~g~-~----~~v~f~~sGt~An   67 (345)
T d1v72a1           4 ALGFSS----DNIAGASPEVAQALVKHSSG--QA--GPYG---TDELTAQVKRKFCEIFER-D----VEVFLVPTGTAAN   67 (345)
T ss_dssp             CCBCSC----GGGCCCCHHHHHHHHHTTSS--CC--CSTT---CSHHHHHHHHHHHHHHTS-C----CEEEEESCHHHHH
T ss_pred             CcCcCC----CCCCCCCHHHHHHHHHHhcc--Cc--cccC---CCHHHHHHHHHHHHHHCC-C----cEEEECCchHHHH
Confidence            577665    45778899999999886542  11  1222   223455555545444442 2    2367778898888


Q ss_pred             ccchh
Q psy237          182 GNHIL  186 (236)
Q Consensus       182 g~a~l  186 (236)
                      ..++.
T Consensus        68 ~~a~~   72 (345)
T d1v72a1          68 ALCLS   72 (345)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554