Psyllid ID: psy2392
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1165 | 2.2.26 [Sep-21-2011] | |||||||
| A4JIR3 | 447 | ATP-dependent protease AT | yes | N/A | 0.375 | 0.979 | 0.684 | 0.0 | |
| Q2T277 | 447 | ATP-dependent protease AT | yes | N/A | 0.376 | 0.982 | 0.679 | 1e-180 | |
| Q0KF69 | 443 | ATP-dependent protease AT | yes | N/A | 0.375 | 0.986 | 0.679 | 1e-180 | |
| Q2Y5Y6 | 443 | ATP-dependent protease AT | yes | N/A | 0.369 | 0.972 | 0.679 | 1e-178 | |
| Q476Y3 | 443 | ATP-dependent protease AT | yes | N/A | 0.375 | 0.986 | 0.672 | 1e-178 | |
| B2U7X3 | 443 | ATP-dependent protease AT | yes | N/A | 0.375 | 0.986 | 0.672 | 1e-177 | |
| B2AGB7 | 443 | ATP-dependent protease AT | yes | N/A | 0.375 | 0.986 | 0.674 | 1e-176 | |
| B2T1N8 | 448 | ATP-dependent protease AT | yes | N/A | 0.374 | 0.973 | 0.675 | 1e-176 | |
| B4E7Z1 | 447 | ATP-dependent protease AT | yes | N/A | 0.375 | 0.979 | 0.682 | 1e-176 | |
| Q39BY0 | 447 | ATP-dependent protease AT | yes | N/A | 0.375 | 0.979 | 0.680 | 1e-176 |
| >sp|A4JIR3|HSLU_BURVG ATP-dependent protease ATPase subunit HslU OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hslU PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 637 bits (1644), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 304/444 (68%), Positives = 382/444 (86%), Gaps = 6/444 (1%)
Query: 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVG 230
++ AEIVSELDK++IGQ++AK+AVA+ALRNRWRRQQ+T PL+QEITPKNILMIGPTGVG
Sbjct: 3 TMTPAEIVSELDKHIIGQSKAKKAVAVALRNRWRRQQVTEPLRQEITPKNILMIGPTGVG 62
Query: 231 KTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTR 290
KTEIARRLAKL++APFIKIEATKFTEVGYVGRDVD+I+RDLI+IS+KQTRE E+ KVR++
Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRESEMRKVRSK 122
Query: 291 AEDAAEDRVIDILVPSKEKSNL--DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 348
A D AEDR++DIL+P + D N++NN +TRQ FRKRLREG LD+KEIE++L
Sbjct: 123 ATDQAEDRILDILLPQPRAVGFGGNADHANDDNN-ATRQTFRKRLREGQLDDKEIELDLE 181
Query: 349 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 408
M+IM+PPGMEEMT QI++MFS +G+ +K+ RK+KI+EA+KLL DEEA K+LN++E
Sbjct: 182 QPSAGMDIMAPPGMEEMTEQIRSMFSNLGSGKKQRRKVKIQEALKLLTDEEAAKMLNDEE 241
Query: 409 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII 468
++ KA+ NVEQNGI+FLDEIDKIT+R+++ + ++SR GVQRDLLPLVEGTTVNTKYG++
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301
Query: 469 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEA 528
KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLS+ DF I+ +T+ L KQY+A
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVEDFESILVATDASLVKQYQA 361
Query: 529 LLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS--- 585
LLATE ++++F DGI+RLAEIAY +NE+TENIGARRLYT +EKLLEEVSF++ N +
Sbjct: 362 LLATEDVQLDFAADGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421
Query: 586 LLVDADYVNSRLGDLSINEDLSRY 609
+ +DA YV+ LG++S +EDLSRY
Sbjct: 422 VTIDAQYVDRALGEVSQDEDLSRY 445
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482) |
| >sp|Q2T277|HSLU_BURTA ATP-dependent protease ATPase subunit HslU OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 633 bits (1633), Expect = e-180, Method: Compositional matrix adjust.
Identities = 301/443 (67%), Positives = 375/443 (84%), Gaps = 4/443 (0%)
Query: 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVG 230
++ AEIVSELDK++IGQ++AK+AVA+ALRNRWRRQQ+ PL+QEITPKNILMIGPTGVG
Sbjct: 3 TMTPAEIVSELDKHIIGQDKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPTGVG 62
Query: 231 KTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTR 290
KTEIARRLAKL++APFIKIEATKFTEVGYVGRDVD+I+RDLI+IS+KQTRE E+ KVR++
Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122
Query: 291 AEDAAEDRVIDILVPSKEKSNLDTDFNNENN-NISTRQIFRKRLREGALDNKEIEIELND 349
A D AEDR++D+L+P + N+ N +TRQ FRKRLREG LD+KEIE+++
Sbjct: 123 ATDLAEDRILDVLLPQPRAVGFGASVEHANDDNNATRQTFRKRLREGQLDDKEIELDIEQ 182
Query: 350 TGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEI 409
M+IM+PPGMEEMT QI++MFS +G+ +K+ RK+KI+EA+KLL DEEA K+LN++E+
Sbjct: 183 PTVGMDIMAPPGMEEMTEQIRSMFSNLGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEEV 242
Query: 410 QQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK 469
+ KA+ NVEQNGI+FLDEIDKIT+R+ + ++SR GVQRDLLPLVEGTT+NTKYG++K
Sbjct: 243 KTKAVQNVEQNGIVFLDEIDKITSRNHEGGGGEVSRQGVQRDLLPLVEGTTINTKYGMVK 302
Query: 470 TDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEAL 529
TDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLS+ DF I+ +T+ L KQY+AL
Sbjct: 303 TDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVKDFEAILVATDASLVKQYQAL 362
Query: 530 LATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI---SL 586
LATE + +EF DDGI+RLAEIAY +NE+TENIGARRLYT +EKLLEEVSF + N S+
Sbjct: 363 LATEDVALEFADDGIRRLAEIAYAVNEKTENIGARRLYTVIEKLLEEVSFAAGNHAGQSV 422
Query: 587 LVDADYVNSRLGDLSINEDLSRY 609
+DA YV+ LG++S +EDLSRY
Sbjct: 423 TIDAAYVDRALGEVSKDEDLSRY 445
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) (taxid: 271848) |
| >sp|Q0KF69|HSLU_CUPNH ATP-dependent protease ATPase subunit HslU OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 632 bits (1630), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/446 (67%), Positives = 379/446 (84%), Gaps = 9/446 (2%)
Query: 168 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPT 227
+ ++ +EIVSELDK++IGQN+AK+AVA+ALRNRWRRQQ+ PL+QEITPKNILMIGPT
Sbjct: 1 MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60
Query: 228 GVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKV 287
GVGKTEIARRLAKL++APFIKIEATKFTEVGYVGRDVDTI+RDL +++IKQTRE E+ KV
Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120
Query: 288 RTRAEDAAEDRVIDILVPSKEKSNLDTDFNN-ENNNISTRQIFRKRLREGALDNKEIEIE 346
RT+AEDAAEDR++D+L+P D F+ E + +TRQ+FRK+LREG+LD+KEIE+E
Sbjct: 121 RTKAEDAAEDRLLDVLLPPAR----DIGFSQPEEKDSNTRQVFRKKLREGSLDDKEIELE 176
Query: 347 LNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 406
L+ P M+IM PPGME+MT QI+TMF+ +G +K RK+K++EA KLLIDEEA KL+N+
Sbjct: 177 LSAGMPSMDIMGPPGMEDMTEQIRTMFAGLGQGKKARRKMKVKEAFKLLIDEEAAKLVND 236
Query: 407 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 466
+E++ KAI NVEQNGI+FLDEIDKI +R S+ ++SR GVQRDLLPLVEGTTV+TKYG
Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKIASR-SEIGGGEVSRQGVQRDLLPLVEGTTVSTKYG 295
Query: 467 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQY 526
+IKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVELDSLS+ DF I+T T+ LTKQY
Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILTQTDASLTKQY 355
Query: 527 EALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS- 585
+ALL+TE + + F DDGI+RLAEIA+ +NE+ ENIGARRLYT ME+LLE++SF++ S
Sbjct: 356 QALLSTESVDLVFADDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHATKSSG 415
Query: 586 --LLVDADYVNSRLGDLSINEDLSRY 609
+ ++A YV+ RLGDL++NEDLSRY
Sbjct: 416 ETVTINAAYVDERLGDLAVNEDLSRY 441
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) |
| >sp|Q2Y5Y6|HSLU_NITMU ATP-dependent protease ATPase subunit HslU OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 297/437 (67%), Positives = 373/437 (85%), Gaps = 6/437 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIV ELDK++IGQ+ AKR+VAIALRNRWRRQQ+ PL+QEITPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVHELDKHIIGQDAAKRSVAIALRNRWRRQQVQDPLRQEITPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL++APFIK+EATKFTEVGYVGRDVD+IIRDL++ ++KQ+RE E K+R RAED A
Sbjct: 68 RRLAKLADAPFIKVEATKFTEVGYVGRDVDSIIRDLVEAAVKQSRERETQKMRARAEDHA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+R++D+L+P ++ L D + +TRQ FRK+LREG L++KEIEIEL HME
Sbjct: 128 EERILDVLLPVARETGLQMDSIEAES--ATRQKFRKKLREGELNDKEIEIELATPHTHME 185
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
I +PPGMEE+T QI+ MF +G RK+ RK+KIREA+KLLIDEEA+KL+N++E++ +A+
Sbjct: 186 IFAPPGMEELTTQIQGMFQNLGAERKRMRKLKIREAMKLLIDEEASKLVNDEELKLRAVQ 245
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
NVEQNGI+FLDEIDKIT+RS + + D+SR GVQRDLLPLVEGTT++TKYG+IKTDHILF
Sbjct: 246 NVEQNGIVFLDEIDKITSRS-ETSGADVSRQGVQRDLLPLVEGTTISTKYGMIKTDHILF 304
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAFHLAKPSDLIPELQGRFPIRVEL SLS DF +I+T+T+ CL +QYEALL TEG+
Sbjct: 305 IASGAFHLAKPSDLIPELQGRFPIRVELTSLSAGDFVQILTNTDACLKRQYEALLETEGV 364
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNS---NNISLLVDADY 592
++EF D ++RLAEIA+ +NE+TENIGARRLYTAMEKLLE+VSF++ + ++++DA Y
Sbjct: 365 RLEFTPDAVKRLAEIAFAVNEKTENIGARRLYTAMEKLLEDVSFDAEKHHGDAVVIDAAY 424
Query: 593 VNSRLGDLSINEDLSRY 609
V+ RLGDL+ +EDL+RY
Sbjct: 425 VDKRLGDLAQSEDLARY 441
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) (taxid: 323848) |
| >sp|Q476Y3|HSLU_CUPPJ ATP-dependent protease ATPase subunit HslU OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 300/446 (67%), Positives = 376/446 (84%), Gaps = 9/446 (2%)
Query: 168 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPT 227
+ ++ +EIVSELDK++IGQN+AK+AVA+ALRNRWRRQQ+ PL+QEITPKNILMIGPT
Sbjct: 1 MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60
Query: 228 GVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKV 287
GVGKTEIARRLAKL++APFIKIEATKFTEVGYVGRDVDTI+RDL +++IKQTRE E+ KV
Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120
Query: 288 RTRAEDAAEDRVIDILVPSKEKSNLDTDFNN-ENNNISTRQIFRKRLREGALDNKEIEIE 346
RT+AE+AAEDR++D+L+P D F+ E + +TRQ+FRK+LREG LD+K+IE+E
Sbjct: 121 RTKAEEAAEDRLLDVLLPPPR----DIGFSQPEEKDSNTRQVFRKKLREGQLDDKDIELE 176
Query: 347 LNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 406
+ P M+IM PPGMEEMT QI++MF+ +G +K RK+K++EA KLLIDEEA KL+N+
Sbjct: 177 VAAGLPSMDIMGPPGMEEMTEQIRSMFAGMGQGKKHRRKMKVKEAFKLLIDEEAAKLVND 236
Query: 407 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 466
+E++ KAI NVEQNGI+FLDEIDKI RS ++SR GVQRDLLPLVEGTTV+TKYG
Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKIANRSELGGG-EVSRQGVQRDLLPLVEGTTVSTKYG 295
Query: 467 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQY 526
+IKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLS+ DF I+T T+ LTKQY
Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQY 355
Query: 527 EALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS- 585
+ALL TE ++++F DGI+RLAEIA+ +NE+ ENIGARRLYT ME+LLE++SF+++ S
Sbjct: 356 QALLKTEEVELQFAPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHASKSSG 415
Query: 586 --LLVDADYVNSRLGDLSINEDLSRY 609
+ +DA YVN RLGDL++NEDLSRY
Sbjct: 416 ETVTIDAAYVNERLGDLAVNEDLSRY 441
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) |
| >sp|B2U7X3|HSLU_RALPJ ATP-dependent protease ATPase subunit HslU OS=Ralstonia pickettii (strain 12J) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 624 bits (1608), Expect = e-177, Method: Compositional matrix adjust.
Identities = 300/446 (67%), Positives = 373/446 (83%), Gaps = 9/446 (2%)
Query: 168 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPT 227
+ +++ +EIVSELDK++IGQ++AK+AVA+ALRNRWRRQQ+ PL+QEITPKNILMIGPT
Sbjct: 1 MSETMTPSEIVSELDKHIIGQHKAKKAVAVALRNRWRRQQVGDPLRQEITPKNILMIGPT 60
Query: 228 GVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKV 287
GVGKTEIARRLAKL++APFIKIEATKFTEVGYVGRDVDTI+RDL ++++KQTRE E+ KV
Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAVKQTRESEMKKV 120
Query: 288 RTRAEDAAEDRVIDILVPSKEKSNLDTDFNN-ENNNISTRQIFRKRLREGALDNKEIEIE 346
R +AEDAAEDR++D+L+P D F E + + RQ FRK+LREG LD+KEIE+E
Sbjct: 121 RAKAEDAAEDRILDVLIPPPR----DIGFAQPEEKDSTARQTFRKKLREGQLDDKEIELE 176
Query: 347 LNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 406
++ P M+IM PPGME+MT QI++MF+ +G +K RK+K+ EA KLLIDEEA KL+NE
Sbjct: 177 VSAGAPSMDIMGPPGMEDMTEQIRSMFAGLGQGKKNRRKMKVSEAFKLLIDEEAAKLVNE 236
Query: 407 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 466
DE++QKA+ NVEQNGI+FLDEIDKI +RS + ++SR GVQRDLLPLVEGTTVNTKYG
Sbjct: 237 DELKQKAVANVEQNGIVFLDEIDKIASRS-EYGGGEVSRQGVQRDLLPLVEGTTVNTKYG 295
Query: 467 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQY 526
+IKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVELDSLS+ DF I+T T+ LTKQY
Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVEDFRAILTQTDASLTKQY 355
Query: 527 EALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS- 585
+ALL TEG+ + F +DGI+RLAEIA +NE+ ENIGARRLYT ME+LLE++SF+++ S
Sbjct: 356 QALLKTEGVDLVFAEDGIRRLAEIACSVNEKVENIGARRLYTVMERLLEDLSFHAHKSSG 415
Query: 586 --LLVDADYVNSRLGDLSINEDLSRY 609
+ +DA YV+ RL +LS NEDLSRY
Sbjct: 416 ETVTIDAAYVDERLSELSGNEDLSRY 441
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Ralstonia pickettii (strain 12J) (taxid: 402626) |
| >sp|B2AGB7|HSLU_CUPTR ATP-dependent protease ATPase subunit HslU OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 621 bits (1601), Expect = e-176, Method: Compositional matrix adjust.
Identities = 301/446 (67%), Positives = 374/446 (83%), Gaps = 9/446 (2%)
Query: 168 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPT 227
+ ++ +EIVSELDK++IGQN+AK+AVA+ALRNRWRRQQ+ PL+QEITPKNILMIGPT
Sbjct: 1 MSHTMTPSEIVSELDKHIIGQNKAKKAVAVALRNRWRRQQVAEPLRQEITPKNILMIGPT 60
Query: 228 GVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKV 287
GVGKTEIARRLAKL++APFIKIEATKFTEVGYVGRDVDTI+RDL +++IKQTRE E+ KV
Sbjct: 61 GVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIVRDLAEMAIKQTRESEMKKV 120
Query: 288 RTRAEDAAEDRVIDILVPSKEKSNLDTDFNN-ENNNISTRQIFRKRLREGALDNKEIEIE 346
RT+AEDAAEDR++D+L+P D F+ E + +TRQ+FRK+LREG LD+K+IE+E
Sbjct: 121 RTKAEDAAEDRLLDVLLPPPR----DIGFSQPEEKDSNTRQVFRKKLREGQLDDKDIELE 176
Query: 347 LNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 406
++ P M+IM PPGME+MT QI+TMF+ +G +K RK+K++EA KLLIDEEA KL+N+
Sbjct: 177 VSAGMPSMDIMGPPGMEDMTEQIRTMFAGLGQGKKARRKMKVKEAFKLLIDEEAAKLVND 236
Query: 407 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 466
+E++ KAI NVEQNGI+FLDEIDKI +RS ++SR GVQRDLLPLVEGTTVNTKYG
Sbjct: 237 EELKHKAIANVEQNGIVFLDEIDKIASRSDIGGG-EVSRQGVQRDLLPLVEGTTVNTKYG 295
Query: 467 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQY 526
+IKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLS+ DF I+T T+ LTKQY
Sbjct: 296 MIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSVQDFEAILTQTDASLTKQY 355
Query: 527 EALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS- 585
+ALL TE + + F DGI+RLAEIA+ +NE+ ENIGARRLYT ME+LLE++SF+++ S
Sbjct: 356 QALLNTEEVNLVFAPDGIRRLAEIAFSVNEKVENIGARRLYTVMERLLEDLSFHASKSSG 415
Query: 586 --LLVDADYVNSRLGDLSINEDLSRY 609
+ +DA YV RLGDL+ NEDLSRY
Sbjct: 416 ETVTIDAAYVEERLGDLAGNEDLSRY 441
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546) |
| >sp|B2T1N8|HSLU_BURPP ATP-dependent protease ATPase subunit HslU OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 620 bits (1598), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/447 (67%), Positives = 375/447 (83%), Gaps = 11/447 (2%)
Query: 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVG 230
++ AEIVSELDK++IGQ RAK+AVA+ALRNRWRRQQ+ PL+QEITPKNILMIGPTGVG
Sbjct: 3 TMTPAEIVSELDKHIIGQGRAKKAVAVALRNRWRRQQVEDPLRQEITPKNILMIGPTGVG 62
Query: 231 KTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTR 290
KTEIARRLAKL++APFIKIEATKFTEVGYVGRDVD+I+RDLI+IS+KQTRE E+ KVRT+
Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRTK 122
Query: 291 AEDAAEDRVIDILVPSKEK-----SNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEI 345
AED AEDR++DIL+PS S+ D +E++ +TRQ FRKRLREG LD+KEIE+
Sbjct: 123 AEDQAEDRILDILLPSARPVGFGASSSAADTVDESS--TTRQTFRKRLREGLLDDKEIEL 180
Query: 346 ELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLN 405
++ M+IM PPGME+MT QI++MF+ IG +K RK+K++EA+K+L DEEA K+LN
Sbjct: 181 DVEQPQVGMDIMGPPGMEDMTEQIRSMFANIGGGKKTRRKLKVKEALKVLTDEEAGKMLN 240
Query: 406 EDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY 465
++E++ KA+ NVEQNGI+FLDEIDKI +R+ + ++SR GVQRDLLPLVEGTT+NTKY
Sbjct: 241 DEEVKTKAVQNVEQNGIVFLDEIDKIASRN-EAGGGEVSRQGVQRDLLPLVEGTTINTKY 299
Query: 466 GIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQ 525
G++KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLS++DF I+ ST+ L KQ
Sbjct: 300 GMVKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFESILVSTDASLVKQ 359
Query: 526 YEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS 585
Y+ALLATE + +EF DDGI+RLAEIAY +NE+TENIGARRLYT +EKLLEEVSF + N S
Sbjct: 360 YQALLATEDVHLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFAAGNHS 419
Query: 586 ---LLVDADYVNSRLGDLSINEDLSRY 609
+ +DA YV+ L +++ +EDLSRY
Sbjct: 420 GRTVQIDAAYVDRALNEVAEDEDLSRY 446
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527) |
| >sp|B4E7Z1|HSLU_BURCJ ATP-dependent protease ATPase subunit HslU OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 619 bits (1597), Expect = e-176, Method: Compositional matrix adjust.
Identities = 303/444 (68%), Positives = 382/444 (86%), Gaps = 6/444 (1%)
Query: 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVG 230
++ AEIVSELDK++IGQ +AK+AVA+ALRNRWRRQQ+ PL+QEITPKNILMIGPTGVG
Sbjct: 3 TMTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVG 62
Query: 231 KTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTR 290
KTEIARRLAKL++APFIKIEATKFTEVGYVGRDVD+I+RDLI+IS+KQTRE E+ KVR++
Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTREAEMRKVRSK 122
Query: 291 AEDAAEDRVIDILVPSKEKSNL--DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 348
A D AEDR++DIL+P + + N++NN +TRQ FRKRLREG LD+KE+E++L
Sbjct: 123 ATDQAEDRILDILLPQPRAVGFGGNAEHANDDNN-ATRQTFRKRLREGQLDDKEVELDLE 181
Query: 349 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 408
M+IM+PPGMEEMT QI++MFS +G+ +K+ RK+KI+EA+KLL DEEA K+LNE+E
Sbjct: 182 QPSVGMDIMAPPGMEEMTEQIRSMFSNLGSGKKQRRKVKIKEALKLLTDEEAAKMLNEEE 241
Query: 409 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII 468
++ KA+ NVEQNGI+FLDEIDKIT+R+++ + ++SR GVQRDLLPLVEGTTVNTKYG++
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301
Query: 469 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEA 528
KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLS++DF I+ +T+ L KQY+A
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361
Query: 529 LLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS--- 585
LLATE +++EF DDGI+RLAEIA+ +NE+TENIGARRLYT +EKLLEEVSF++ N +
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAFAVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421
Query: 586 LLVDADYVNSRLGDLSINEDLSRY 609
+ +DA YV+ LG++S +EDLSRY
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRY 445
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591) |
| >sp|Q39BY0|HSLU_BURS3 ATP-dependent protease ATPase subunit HslU OS=Burkholderia sp. (strain 383) GN=hslU PE=3 SV=1 | Back alignment and function description |
|---|
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 302/444 (68%), Positives = 382/444 (86%), Gaps = 6/444 (1%)
Query: 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVG 230
++ AEIVSELDK++IGQ +AK+AVA+ALRNRWRRQQ+ PL+QEITPKNILMIGPTGVG
Sbjct: 3 TMTPAEIVSELDKHIIGQAKAKKAVAVALRNRWRRQQVADPLRQEITPKNILMIGPTGVG 62
Query: 231 KTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTR 290
KTEIARRLAKL++APFIKIEATKFTEVGYVGRDVD+I+RDLI+IS+KQTRE E+ KVR++
Sbjct: 63 KTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDSIVRDLIEISVKQTRETEMRKVRSK 122
Query: 291 AEDAAEDRVIDILVPSKEKSNL--DTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 348
A D AEDR++DIL+P + + N++NN +TRQ FRKRLREG LD+KE+E+++
Sbjct: 123 ATDQAEDRILDILLPQPRAVGFGGNAEHANDDNN-ATRQTFRKRLREGQLDDKEVELDIE 181
Query: 349 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 408
M+IM+PPGMEEMT QI++MFS +G+ +K+ RK+KI+EA+KLL DEEA K+LN++E
Sbjct: 182 QPSAGMDIMAPPGMEEMTEQIRSMFSNLGSGKKQRRKVKIKEALKLLTDEEAAKMLNDEE 241
Query: 409 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII 468
++ KA+ NVEQNGI+FLDEIDKIT+R+++ + ++SR GVQRDLLPLVEGTTVNTKYG++
Sbjct: 242 VKTKAVQNVEQNGIVFLDEIDKITSRNNEGSGGEVSRQGVQRDLLPLVEGTTVNTKYGMV 301
Query: 469 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEA 528
KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLS++DF I+ +T+ L KQY+A
Sbjct: 302 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSVNDFEAILVATDASLVKQYQA 361
Query: 529 LLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS--- 585
LLATE +++EF DDGI+RLAEIAY +NE+TENIGARRLYT +EKLLEEVSF++ N +
Sbjct: 362 LLATEDVQLEFADDGIRRLAEIAYSVNEKTENIGARRLYTVIEKLLEEVSFSAGNHAGER 421
Query: 586 LLVDADYVNSRLGDLSINEDLSRY 609
+ +DA YV+ LG++S +EDLSRY
Sbjct: 422 VTIDAKYVDRALGEVSQDEDLSRY 445
|
ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. Burkholderia sp. (strain 383) (taxid: 269483) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1165 | ||||||
| 152981245 | 449 | ATP-dependent protease ATP-binding subun | 0.370 | 0.962 | 0.760 | 0.0 | |
| 398833714 | 448 | ATP-dependent protease HslVU, ATPase sub | 0.371 | 0.966 | 0.750 | 0.0 | |
| 134096123 | 445 | ATP-dependent protease ATP-binding subun | 0.371 | 0.973 | 0.763 | 0.0 | |
| 409408779 | 457 | ATP-dependent protease HslVU ATPase subu | 0.381 | 0.971 | 0.753 | 0.0 | |
| 340789226 | 547 | ATP-dependent hsl protease ATP-binding s | 0.387 | 0.824 | 0.741 | 0.0 | |
| 300309525 | 448 | ATP-dependent protease HslVU ATPase subu | 0.371 | 0.966 | 0.759 | 0.0 | |
| 427399737 | 450 | ATP-dependent protease ATPase subunit Hs | 0.371 | 0.962 | 0.751 | 0.0 | |
| 415939595 | 457 | ATP-dependent HslUV protease, ATP-bindin | 0.377 | 0.962 | 0.740 | 0.0 | |
| 395760626 | 452 | ATP-dependent protease ATP-binding subun | 0.372 | 0.960 | 0.733 | 0.0 | |
| 445494268 | 446 | ATP-dependent protease ATPase subunit Hs | 0.369 | 0.966 | 0.741 | 0.0 |
| >gi|152981245|ref|YP_001354904.1| ATP-dependent protease ATP-binding subunit HslU [Janthinobacterium sp. Marseille] gi|151281322|gb|ABR89732.1| ATP-dependent HslUV protease ATP-binding subunit HslU [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/443 (76%), Positives = 382/443 (86%), Gaps = 11/443 (2%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK+V+GQ RAKRAVAIALRNRWRRQQ+ PL+ EITPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDKHVVGQGRAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGKTEIA 66
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDLIDI IKQTRE E KVR RAEDAA
Sbjct: 67 RRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRELETRKVRARAEDAA 126
Query: 296 EDRVIDILVPS------KEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELND 349
EDR+IDILVP S+ +D N +TRQ FRKRLREG LD+ EIEIEL +
Sbjct: 127 EDRIIDILVPPARDFGFHPSSSTGSDTAPSTGN-ATRQTFRKRLREGTLDDTEIEIELAE 185
Query: 350 TGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEI 409
GP MEIM+PPGMEEMT QIK+MFS +G RKKTRK+KI+EA+KLLI+EEA KL+NEDE+
Sbjct: 186 AGPSMEIMAPPGMEEMTEQIKSMFSGVGGTRKKTRKVKIKEAMKLLIEEEAGKLVNEDEL 245
Query: 410 QQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK 469
+QKAI NVEQNGI+FLDEIDKI TRS +N D+SRAGVQRDLLPLVEGTTVNTKYG+IK
Sbjct: 246 KQKAITNVEQNGIVFLDEIDKIATRS-ENGGADVSRAGVQRDLLPLVEGTTVNTKYGMIK 304
Query: 470 TDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEAL 529
TDHILFIASGAFHLAKPSDLIPELQGRFPIRVEL+SLSI+DF RI+TST+ CLT+QYEAL
Sbjct: 305 TDHILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTSTDACLTRQYEAL 364
Query: 530 LATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSN---NISL 586
L TEG+KIEF DGI+R+AEIAY +NE+TENIGARRLYT MEKLLEE+SF++ + +L
Sbjct: 365 LGTEGVKIEFAPDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSATDDPDQTL 424
Query: 587 LVDADYVNSRLGDLSINEDLSRY 609
++D YV+ RLG LS+NEDLSRY
Sbjct: 425 VIDGVYVDERLGALSVNEDLSRY 447
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398833714|ref|ZP_10591838.1| ATP-dependent protease HslVU, ATPase subunit [Herbaspirillum sp. YR522] gi|398221044|gb|EJN07473.1| ATP-dependent protease HslVU, ATPase subunit [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/441 (75%), Positives = 382/441 (86%), Gaps = 8/441 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK+V+GQ RAKRAVAIALRNRWRRQQ+ PL+ EITPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDKHVVGQARAKRAVAIALRNRWRRQQVEEPLRHEITPKNILMIGPTGVGKTEIA 66
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDLIDI IKQTRE E+ KVR RAEDAA
Sbjct: 67 RRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTREQEVRKVRARAEDAA 126
Query: 296 EDRVIDILVPSKEKSNLDTDFN----NENNNISTRQIFRKRLREGALDNKEIEIELNDTG 351
EDR++DILVP +D N ++++ +TRQ RKRLREGALD +EIEIE+ D+G
Sbjct: 127 EDRILDILVPPARDFGFTSDNNAGSADKDDKNTTRQTLRKRLREGALDEREIEIEVADSG 186
Query: 352 PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411
MEIM+PPGMEEMT QIK+MFS +GN RKK R++KI EA+KLLI+EEA KL+NE+E++Q
Sbjct: 187 AAMEIMAPPGMEEMTEQIKSMFSGMGNQRKKARRVKISEAMKLLIEEEAGKLVNEEELKQ 246
Query: 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD 471
+AI NVEQNGI+FLDEIDKI TRS QN D+SRAGVQRDLLPLVEGTTVNTKYG+IKTD
Sbjct: 247 RAIANVEQNGIVFLDEIDKIATRS-QNGGADVSRAGVQRDLLPLVEGTTVNTKYGMIKTD 305
Query: 472 HILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 531
HILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSI+DF RI+T T+ CLT+QYEALLA
Sbjct: 306 HILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTRQYEALLA 365
Query: 532 TEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLL---V 588
TEG++IEF D GI+RLAEI+Y +NE+TENIGARRLYT MEKLLEE+SF + + +
Sbjct: 366 TEGVRIEFADSGIKRLAEISYSVNEKTENIGARRLYTVMEKLLEEISFTAGEAGVAGFTI 425
Query: 589 DADYVNSRLGDLSINEDLSRY 609
D DYV+ RLG+L++NEDLSRY
Sbjct: 426 DGDYVDQRLGELAVNEDLSRY 446
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134096123|ref|YP_001101198.1| ATP-dependent protease ATP-binding subunit HslU [Herminiimonas arsenicoxydans] gi|133740026|emb|CAL63077.1| ATP-dependent Hsl protease ATP-binding subunit HslU [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/440 (76%), Positives = 380/440 (86%), Gaps = 7/440 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK+V+GQ AKRAVAIALRNRWRRQQ+ PL+ EITPKNILMIGPTGVGKTEIA
Sbjct: 5 EIVSELDKHVVGQGNAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGKTEIA 64
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDLIDI IKQTRE E KVR RAEDAA
Sbjct: 65 RRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTREAETRKVRARAEDAA 124
Query: 296 EDRVIDILVPSKEKSNLD---TDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGP 352
EDRVIDILVP T ++ +N+ +TRQ FRKRLREG LD+ EIEIEL + GP
Sbjct: 125 EDRVIDILVPPARDFGFHPSATSTSDHSNDNATRQTFRKRLREGLLDDNEIEIELAEAGP 184
Query: 353 HMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 412
MEIM+PPGMEEMT QIK+MFS G +RKK RKIKIREA+KLLI+EEA KL+NEDE++QK
Sbjct: 185 TMEIMAPPGMEEMTEQIKSMFSGAGGNRKKARKIKIREAMKLLIEEEAGKLVNEDELKQK 244
Query: 413 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH 472
AI NVEQNGI+FLDEIDKI RS Q ++SRAGVQRDLLPLVEGTTVNTKYG+IKTDH
Sbjct: 245 AITNVEQNGIVFLDEIDKIANRSEQGG-AEVSRAGVQRDLLPLVEGTTVNTKYGMIKTDH 303
Query: 473 ILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 532
ILFIASGAFHLAKPSDLIPELQGRFPIRVEL+SLSI+DF RI+T T+ CLTKQY+ALLAT
Sbjct: 304 ILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTGTDACLTKQYQALLAT 363
Query: 533 EGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSN---NISLLVD 589
EG+KIEF DGI+R+AEIAY +NE+TENIGARRLYT MEKLLEE+SF+++ + +L +D
Sbjct: 364 EGVKIEFAQDGIKRMAEIAYSVNEKTENIGARRLYTVMEKLLEEISFSASENPDQTLPID 423
Query: 590 ADYVNSRLGDLSINEDLSRY 609
A YVN RLG LS++EDLSRY
Sbjct: 424 AAYVNERLGALSVDEDLSRY 443
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409408779|ref|ZP_11257214.1| ATP-dependent protease HslVU ATPase subunit [Herbaspirillum sp. GW103] gi|386432101|gb|EIJ44929.1| ATP-dependent protease HslVU ATPase subunit [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/451 (75%), Positives = 390/451 (86%), Gaps = 7/451 (1%)
Query: 165 DEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMI 224
++I ++ EIVSELDK+V+GQ RAKRAVAIALRNRWRRQQI PL+ EITPKNILMI
Sbjct: 6 EKITTMNMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMI 65
Query: 225 GPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEI 284
GPTGVGKTEIARRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDL+DI IKQTRE E
Sbjct: 66 GPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELET 125
Query: 285 NKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFN---NENNNISTRQIFRKRLREGALDNK 341
KVRTRAEDAAEDRV+D+L+P D N +++ +TRQ FRKRLREGALD++
Sbjct: 126 RKVRTRAEDAAEDRVLDVLLPPARDFGFTPDGNASPEKDDKNTTRQTFRKRLREGALDDR 185
Query: 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEAN 401
EIE+ELND P MEIM+PPGMEEMT QIK+MFS +GN RKK RKIKI+EA+KLLI+EEA
Sbjct: 186 EIELELNDAAPSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKIKEAMKLLIEEEAA 245
Query: 402 KLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTV 461
KL+NE+E++QKAI NVEQNGI+FLDEIDKI TRS QN N D+SRAGVQRDLLPLVEGTTV
Sbjct: 246 KLVNEEELKQKAIANVEQNGIVFLDEIDKIATRS-QNGNADVSRAGVQRDLLPLVEGTTV 304
Query: 462 NTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVC 521
NTKYG+IKTDHILFIASGAFHL+KPSDLIPELQGRFPIRVELDSLSI+DF RI+T T+ C
Sbjct: 305 NTKYGMIKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDAC 364
Query: 522 LTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNS 581
LTKQYEALLATEG+KIEF D GIQRLAEI++ +NE+TENIGARRLYT MEKLLEE+SF +
Sbjct: 365 LTKQYEALLATEGVKIEFADSGIQRLAEISHTVNEKTENIGARRLYTVMEKLLEEISFTA 424
Query: 582 NNI---SLLVDADYVNSRLGDLSINEDLSRY 609
LL+DA YVN RLG+L+++ED+SRY
Sbjct: 425 GEAGVDGLLIDAAYVNERLGELAVDEDMSRY 455
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340789226|ref|YP_004754691.1| ATP-dependent hsl protease ATP-binding subunit hslU [Collimonas fungivorans Ter331] gi|340554493|gb|AEK63868.1| ATP-dependent hsl protease ATP-binding subunit hslU [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/465 (74%), Positives = 398/465 (85%), Gaps = 14/465 (3%)
Query: 155 ALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ 214
A N+ L P+ + ++ EIVSELDK+V+GQ+RAKRAVAIALRNRWRRQQI PL+
Sbjct: 85 AHHRNSRLRPNTM---NMTPQEIVSELDKHVVGQDRAKRAVAIALRNRWRRQQIAEPLRH 141
Query: 215 EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDI 274
EITPKNILMIGPTGVGKTEIARRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDLIDI
Sbjct: 142 EITPKNILMIGPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDI 201
Query: 275 SIKQTREFEINKVRTRAEDAAEDRVIDILVPS-------KEKSNLDTDFNNENNNISTRQ 327
IKQTRE E+ KVRTRAEDAAEDRVIDILVP E+S+ D + N + +TRQ
Sbjct: 202 GIKQTREAEMRKVRTRAEDAAEDRVIDILVPPARDFGFHPEQSSGDGE-NAGDKGSNTRQ 260
Query: 328 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387
FRKRLREGALD+KEIEIEL++ MEIM+PPGMEEMT QIK+MFS IG++RKK RKIK
Sbjct: 261 TFRKRLREGALDDKEIEIELSEAASQMEIMAPPGMEEMTEQIKSMFSGIGSNRKKNRKIK 320
Query: 388 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAG 447
I++A+K+LI+EEA KL+NEDE++QKAI+NVEQNGI+FLDEIDKI TRS + D+SRAG
Sbjct: 321 IKDAMKVLIEEEAAKLVNEDELKQKAISNVEQNGIVFLDEIDKIATRSQNSGGADVSRAG 380
Query: 448 VQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLS 507
VQRDLLPLVEGTTVNTKYG+IKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLS
Sbjct: 381 VQRDLLPLVEGTTVNTKYGMIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLS 440
Query: 508 ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLY 567
ISDF RIMT T+ CLTKQYEALLATEG+ +EF +G+QRLAEIA+ +NE+TENIGARRLY
Sbjct: 441 ISDFERIMTGTDACLTKQYEALLATEGVTLEFAKEGVQRLAEIAFSVNEKTENIGARRLY 500
Query: 568 TAMEKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRY 609
T MEKLLEE+SF++ N S +++DA YV+ RLG L +NEDLSRY
Sbjct: 501 TVMEKLLEEISFSATNASEKTMVIDAAYVDQRLGALVVNEDLSRY 545
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300309525|ref|YP_003773617.1| ATP-dependent protease HslVU ATPase subunit [Herbaspirillum seropedicae SmR1] gi|300072310|gb|ADJ61709.1| ATP-dependent protease HslVU (ClpYQ), ATPase subunit heat shock protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/441 (75%), Positives = 386/441 (87%), Gaps = 8/441 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK+V+GQ RAKRAV+IALRNRWRRQQI PL+ EITPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDKHVVGQARAKRAVSIALRNRWRRQQIEEPLRHEITPKNILMIGPTGVGKTEIA 66
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDL+DI IKQTRE E KVRTRAEDAA
Sbjct: 67 RRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTRELETRKVRTRAEDAA 126
Query: 296 EDRVIDILVPSKEKSNLDTDFNN----ENNNISTRQIFRKRLREGALDNKEIEIELNDTG 351
EDR++D+L+P D +N +++ +TRQ FRKRLREGALD++EIE+EL +
Sbjct: 127 EDRILDVLLPPARDFGFTPDGSNNSGEKDDKNTTRQTFRKRLREGALDDREIELELAEAA 186
Query: 352 PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411
P MEIM+PPGMEEMT QIK+MFS +GN RKK RKIKI+EA+KLLI+EEA KL+NE+E++Q
Sbjct: 187 PSMEIMAPPGMEEMTEQIKSMFSGLGNQRKKARKIKIKEAMKLLIEEEAAKLVNEEELKQ 246
Query: 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD 471
KAI NVEQNGI+FLDEIDKI TRS QN N D+SRAGVQRDLLPLVEGTTVNTKYG+IKTD
Sbjct: 247 KAIANVEQNGIVFLDEIDKIATRS-QNGNADVSRAGVQRDLLPLVEGTTVNTKYGMIKTD 305
Query: 472 HILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 531
HILFIASGAFHL+KPSDLIPELQGRFPIRVELDSLSI+DF RI+T T+ CLTKQYEALLA
Sbjct: 306 HILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTGTDACLTKQYEALLA 365
Query: 532 TEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI---SLLV 588
TEG+K+EF D GI+RLAEI++ +NE+TENIGARRLYT MEKLLEE+SF + LL+
Sbjct: 366 TEGVKLEFADSGIKRLAEISHSVNEKTENIGARRLYTVMEKLLEEISFTAGEAGVEGLLI 425
Query: 589 DADYVNSRLGDLSINEDLSRY 609
DADYVN RLG+L+++EDLSRY
Sbjct: 426 DADYVNERLGELAVDEDLSRY 446
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|427399737|ref|ZP_18890975.1| ATP-dependent protease ATPase subunit HslU [Massilia timonae CCUG 45783] gi|425721014|gb|EKU83928.1| ATP-dependent protease ATPase subunit HslU [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/439 (75%), Positives = 377/439 (85%), Gaps = 6/439 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK+V+GQ +AK+AVAIALRNRWRRQQ+ L+ EITPKNILMIGPTGVGKTEIA
Sbjct: 11 EIVSELDKHVVGQGKAKKAVAIALRNRWRRQQVDESLRHEITPKNILMIGPTGVGKTEIA 70
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDLIDI +KQTR E KVR RAEDAA
Sbjct: 71 RRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGVKQTRASEAKKVRQRAEDAA 130
Query: 296 EDRVIDILVPSKEKSNLDTDFNNENN--NISTRQIFRKRLREGALDNKEIEIELNDTGPH 353
EDR+IDILVP +T N + +TRQ FRKRLREG+LD++EIEIE+ D P
Sbjct: 131 EDRIIDILVPPARDFGFNTSSGNGDTKEGEATRQTFRKRLREGSLDDREIEIEVADAAPQ 190
Query: 354 MEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKA 413
MEIM+PPGMEEMT QIK+MF+ +GN RKK RK+KI+EA+KLLIDEEA KLLNEDE++QKA
Sbjct: 191 MEIMAPPGMEEMTEQIKSMFAGVGNARKKPRKLKIKEAMKLLIDEEAGKLLNEDELKQKA 250
Query: 414 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHI 473
I NVEQNGI+FLDEIDKI TRS ++ D+SRAGVQRDLLPLVEGTTVNTKYG+IKTDHI
Sbjct: 251 IANVEQNGIVFLDEIDKIATRS-EHGGADVSRAGVQRDLLPLVEGTTVNTKYGMIKTDHI 309
Query: 474 LFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 533
LFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLSI DF I+TST+ LTKQYEALLATE
Sbjct: 310 LFIASGAFHLSKPSDLIPELQGRFPIRVELESLSIDDFKSILTSTHASLTKQYEALLATE 369
Query: 534 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDA 590
G+KIEFVD+GI RLAEIA+ +NERTENIGARRLYT MEKLLEE+SF++ + + +DA
Sbjct: 370 GVKIEFVDEGIHRLAEIAFSVNERTENIGARRLYTVMEKLLEEISFSAGSEKDQVVRIDA 429
Query: 591 DYVNSRLGDLSINEDLSRY 609
YVN RL L++NEDLSRY
Sbjct: 430 AYVNERLDALAVNEDLSRY 448
|
Source: Massilia timonae CCUG 45783 Species: Massilia timonae Genus: Massilia Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415939595|ref|ZP_11555539.1| ATP-dependent HslUV protease, ATP-binding subunit [Herbaspirillum frisingense GSF30] gi|407759300|gb|EKF69014.1| ATP-dependent HslUV protease, ATP-binding subunit [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/455 (74%), Positives = 390/455 (85%), Gaps = 15/455 (3%)
Query: 165 DEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMI 224
++I ++ EIVSELDK+V+GQ RAKRAVAIALRNRWRRQQI PL+ EITPKNILMI
Sbjct: 6 EKITTMNMTPKEIVSELDKHVVGQARAKRAVAIALRNRWRRQQIEEPLRHEITPKNILMI 65
Query: 225 GPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEI 284
GPTGVGKTEIARRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDL+DI IKQTRE E
Sbjct: 66 GPTGVGKTEIARRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLVDIGIKQTREVET 125
Query: 285 NKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNI-------STRQIFRKRLREGA 337
KVRTRAEDAAEDR++D+L+P D F +EN + +TRQ FRKRLREGA
Sbjct: 126 RKVRTRAEDAAEDRILDVLLPPAR----DFGFTSENGSSGEKDDKNTTRQTFRKRLREGA 181
Query: 338 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLID 397
LD++EIE+ELND P MEIM+PPGMEEMT QIK+MFS +GN RKK RKIKI+EA+KLLID
Sbjct: 182 LDDREIELELNDAAPTMEIMAPPGMEEMTEQIKSMFSGMGNQRKKARKIKIKEAMKLLID 241
Query: 398 EEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 457
EEA KL+N++E++ KAI NVEQNGI+FLDEIDKI TRS QN N D+SRAGVQRDLLPLVE
Sbjct: 242 EEAAKLVNDEELKLKAITNVEQNGIVFLDEIDKIATRS-QNGNADVSRAGVQRDLLPLVE 300
Query: 458 GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 517
GTTVNTKYG++KTDHILFIASGAFHL+KPSDLIPELQGRFPIRVELDSLSI+DF RI+T
Sbjct: 301 GTTVNTKYGMVKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSIADFERILTG 360
Query: 518 TNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577
T+ CLTKQYEALLATEG+KIEF D GI+RLAEI++ +NE+TENIGARRLYT MEKLLEE+
Sbjct: 361 TDACLTKQYEALLATEGVKIEFADSGIKRLAEISHTVNEKTENIGARRLYTVMEKLLEEI 420
Query: 578 SFNSNNI---SLLVDADYVNSRLGDLSINEDLSRY 609
SF + L++D DYVN RLG+L+++ED+SRY
Sbjct: 421 SFTAGEAGVDGLMIDGDYVNERLGELAVDEDMSRY 455
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|395760626|ref|ZP_10441295.1| ATP-dependent protease ATP-binding subunit HslU [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/446 (73%), Positives = 374/446 (83%), Gaps = 12/446 (2%)
Query: 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEI 234
+EIV+ELDK+V+GQ +AKRAVAIALRNRWRRQQ+ PL+ EITPKNILMIGPTGVGKTEI
Sbjct: 6 SEIVTELDKHVVGQAKAKRAVAIALRNRWRRQQVAEPLRHEITPKNILMIGPTGVGKTEI 65
Query: 235 ARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDA 294
ARRLAKL+ APFIKIEATKFTEVGYVGRDVDTIIRDLIDI IKQTR E+ KVR RAEDA
Sbjct: 66 ARRLAKLAEAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGIKQTRALEMKKVRARAEDA 125
Query: 295 AEDRVIDILVPSKEKSNLDTDF-----NNENNNISTRQIFRKRLREGALDNKEIEIELND 349
AEDR+IDILVP + + + STRQ FRKRLR+G LD+KEIEIEL +
Sbjct: 126 AEDRIIDILVPPARDFGFTPNTPAAVDSGSGSGDSTRQTFRKRLRQGELDDKEIEIELAE 185
Query: 350 TGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEI 409
GP MEIM+PPGMEEMT QIK+MFS +G RKK RK+KI EA+KLL++EEA KL+NEDE+
Sbjct: 186 AGPQMEIMAPPGMEEMTEQIKSMFSGVGGQRKKARKVKIAEALKLLVEEEAAKLVNEDEL 245
Query: 410 QQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK 469
+QKAI NVEQNGI+FLDEIDKI +RS ++ D+SRAGVQRDLLPLVEGTTVNTKYG+I+
Sbjct: 246 KQKAIQNVEQNGIVFLDEIDKIASRS-ESGGADVSRAGVQRDLLPLVEGTTVNTKYGMIR 304
Query: 470 TDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEAL 529
TDHILFIASGAFHL+KPSDLIPELQGRFPIRVEL+SLSISDF RI+TST+ CLT QY AL
Sbjct: 305 TDHILFIASGAFHLSKPSDLIPELQGRFPIRVELESLSISDFERILTSTDACLTMQYTAL 364
Query: 530 LATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---- 585
LATE + ++F +GI RLAEIAY +NERTENIGARRL+T MEKLLEEVSF ++ S
Sbjct: 365 LATENLTLQFAPEGITRLAEIAYSVNERTENIGARRLHTVMEKLLEEVSFTASEGSSSTE 424
Query: 586 --LLVDADYVNSRLGDLSINEDLSRY 609
LL+DA YVN RL LS+NEDLSRY
Sbjct: 425 NLLLIDAAYVNERLEALSVNEDLSRY 450
|
Source: Janthinobacterium lividum PAMC 25724 Species: Janthinobacterium lividum Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|445494268|ref|ZP_21461312.1| ATP-dependent protease ATPase subunit HslU [Janthinobacterium sp. HH01] gi|444790429|gb|ELX11976.1| ATP-dependent protease ATPase subunit HslU [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/441 (74%), Positives = 375/441 (85%), Gaps = 10/441 (2%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIV ELDK+V+GQ AK+AVAIALRNRWRRQQ+ PL+ EITPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVGELDKHVVGQGNAKKAVAIALRNRWRRQQVEEPLRHEITPKNILMIGPTGVGKTEIA 66
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL++APFIKIEATKFTEVGYVGRDVDTIIRDLIDI +KQTR E+ KVRTRAEDAA
Sbjct: 67 RRLAKLADAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIGVKQTRSAEMAKVRTRAEDAA 126
Query: 296 EDRVIDILVPSKEKSNLD----TDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTG 351
EDRV+DIL+P +D E + +TRQ FRKRLR+G LD+KEIEIEL + G
Sbjct: 127 EDRVLDILLPPARDFGFHQAAPSDAPKEVD--TTRQTFRKRLRQGELDDKEIEIELAENG 184
Query: 352 PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411
P MEIM+PPGMEEMT QIK+MFS IG R+K RK+KI+EA+K+LIDEEA KL+N+DE++Q
Sbjct: 185 PQMEIMAPPGMEEMTEQIKSMFSGIGGSRRKARKVKIKEAMKVLIDEEAAKLVNDDEMKQ 244
Query: 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD 471
KAI NVEQNGI+FLDEIDKI +RS + D+SRAGVQRDLLPLVEGTTVNTKYG+IKTD
Sbjct: 245 KAIQNVEQNGIVFLDEIDKIASRS-EVGGADVSRAGVQRDLLPLVEGTTVNTKYGMIKTD 303
Query: 472 HILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 531
HILFIASGAFHLAKPSDLIPELQGRFPIRVEL+SLSI+DF RI+TST+ CLTKQYEALLA
Sbjct: 304 HILFIASGAFHLAKPSDLIPELQGRFPIRVELESLSIADFERILTSTDACLTKQYEALLA 363
Query: 532 TEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLV 588
TE + I F +GI RLAEIAY +NERTENIGARRLYT MEKLLEE+SF ++ S + +
Sbjct: 364 TENVTIAFAPEGITRLAEIAYSVNERTENIGARRLYTVMEKLLEELSFTASEDSGKVITI 423
Query: 589 DADYVNSRLGDLSINEDLSRY 609
DA YVN+RL L++NEDLSRY
Sbjct: 424 DAAYVNARLDALAVNEDLSRY 444
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1165 | ||||||
| UNIPROTKB|P0A6H5 | 443 | hslU [Escherichia coli K-12 (t | 0.369 | 0.972 | 0.613 | 6.3e-140 | |
| UNIPROTKB|P43773 | 444 | hslU "ATP-dependent protease A | 0.369 | 0.968 | 0.608 | 1.3e-137 | |
| TIGR_CMR|SO_4163 | 440 | SO_4163 "heat shock protein Hs | 0.367 | 0.972 | 0.610 | 1.7e-137 | |
| TIGR_CMR|CBU_2012 | 447 | CBU_2012 "heat shock protein H | 0.370 | 0.966 | 0.603 | 3.2e-136 | |
| TIGR_CMR|CPS_4370 | 443 | CPS_4370 "heat shock protein H | 0.369 | 0.972 | 0.592 | 1.2e-134 | |
| UNIPROTKB|Q9KNQ7 | 443 | hslU "ATP-dependent protease A | 0.369 | 0.972 | 0.578 | 1.6e-132 | |
| TIGR_CMR|VC_2674 | 443 | VC_2674 "protease HslVU, ATPas | 0.369 | 0.972 | 0.578 | 1.6e-132 | |
| TIGR_CMR|SPO_3882 | 435 | SPO_3882 "heat shock protein H | 0.360 | 0.965 | 0.552 | 5.4e-118 | |
| TIGR_CMR|CHY_1790 | 461 | CHY_1790 "heat shock protein H | 0.376 | 0.952 | 0.494 | 1.9e-115 | |
| TIGR_CMR|NSE_0177 | 472 | NSE_0177 "heat shock protein H | 0.368 | 0.908 | 0.512 | 5.9e-112 |
| UNIPROTKB|P0A6H5 hslU [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
Identities = 268/437 (61%), Positives = 353/437 (80%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDK++IGQ+ AKR+VAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R I K R RAE+ A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAAVKMVRVQAIEKNRYRAEELA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+R++D+L+P + + T+ + RQ FRK+LREG LD+KEIEI+L +E
Sbjct: 128 EERILDVLIPPAKNNWGQTEQQQEPS--AARQAFRKKLREGQLDDKEIEIDLAAAPMGVE 185
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IM+PPGMEEMT+Q+++MF +G ++K RK+KI++A+KLLI+EEA KL+N +E++Q AI+
Sbjct: 186 IMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKIKDAMKLLIEEEAAKLVNPEELKQDAID 245
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
VEQ+GI+F+DEIDKI R +++ D+SR GVQRDLLPLVEG TV+TK+G++KTDHILF
Sbjct: 246 AVEQHGIVFIDEIDKICKRG-ESSGPDVSREGVQRDLLPLVEGCTVSTKHGMVKTDHILF 304
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAF +AKPSDLIPELQGR PIRVEL +L+ SDF RI+T N +T QY+AL+ATEG+
Sbjct: 305 IASGAFQIAKPSDLIPELQGRLPIRVELQALTTSDFERILTEPNASITVQYKALMATEGV 364
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADY 592
IEF D GI+R+AE A+ +NE TENIGARRL+T +E+L+EE+S++++++S + +DADY
Sbjct: 365 NIEFTDSGIKRIAEAAWQVNESTENIGARRLHTVLERLMEEISYDASDLSGQNITIDADY 424
Query: 593 VNSRLGDLSINEDLSRY 609
V+ L L +EDLSR+
Sbjct: 425 VSKHLDALVADEDLSRF 441
|
|
| UNIPROTKB|P43773 hslU "ATP-dependent protease ATPase subunit HslU" [Haemophilus influenzae Rd KW20 (taxid:71421)] | Back alignment and assigned GO terms |
|---|
Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
Identities = 267/439 (60%), Positives = 355/439 (80%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 354
E+R++D L+P + N + STRQ FRK+LREG LD+KEIEI+++ G M
Sbjct: 128 EERILDALLPPAK--NQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVS-AGVSMG 184
Query: 355 -EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKA 413
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKA
Sbjct: 185 VEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKA 244
Query: 414 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHI 473
I+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHI
Sbjct: 245 IDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHI 303
Query: 474 LFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATE 533
LFIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATE
Sbjct: 304 LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 363
Query: 534 GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDA 590
G+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF++++++ + +DA
Sbjct: 364 GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDA 423
Query: 591 DYVNSRLGDLSINEDLSRY 609
YV LG++ NEDLSR+
Sbjct: 424 AYVADALGEVVENEDLSRF 442
|
|
| TIGR_CMR|SO_4163 SO_4163 "heat shock protein HslVU, ATPase subunit HslU" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
Identities = 267/437 (61%), Positives = 350/437 (80%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIV ELD ++IGQ +AKR+VA+ALRNRWRR Q+ +QE+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVHELDAHIIGQKKAKRSVAVALRNRWRRMQLDADFRQEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++V+ IIRDL DI+IK TRE ++ K R RAE+ A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVEQIIRDLTDIAIKLTREQQMGKCRQRAEEHA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+R++D L+P K K+ D+ +TRQIFRK+LRE LD+KEI+I++ +E
Sbjct: 128 EERILDALLP-KPKN----DWDDSDSNSNTRQIFRKKLRESQLDDKEIDIDVAQPQIGIE 182
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IMSPPGMEEMT Q++++F +G K RK+KI+EA KLLI+EEA KL+N+++++++AI
Sbjct: 183 IMSPPGMEEMTNQLQSLFKNMGQAPAKRRKMKIKEAFKLLIEEEAAKLVNQEDLKEQAIE 242
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
VEQNGI+FLDEIDKI R + + D+SR GVQRDLLPLVEG TV TK+G++KTDHILF
Sbjct: 243 LVEQNGIVFLDEIDKICKRG-ETSGPDVSREGVQRDLLPLVEGCTVTTKHGMVKTDHILF 301
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAF ++KPSDLIPELQGR PIRVELD+L+ DF RI+T + LT+QY AL+ATEG+
Sbjct: 302 IASGAFQMSKPSDLIPELQGRLPIRVELDALTADDFKRILTEPHASLTEQYIALMATEGV 361
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN---ISLLVDADY 592
IEF + GI+ +A+ A+ +NERTENIGARRL+T MEKL+E++S+ +++ S ++DADY
Sbjct: 362 IIEFTESGIESIAKAAWQVNERTENIGARRLHTVMEKLMEDISYEASDKSGSSFVIDADY 421
Query: 593 VNSRLGDLSINEDLSRY 609
V++ L +L +EDLSR+
Sbjct: 422 VSAHLDNLVQDEDLSRF 438
|
|
| TIGR_CMR|CBU_2012 CBU_2012 "heat shock protein HslVU, ATPase subunit HslU" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
Identities = 266/441 (60%), Positives = 345/441 (78%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIV+ELDK++IGQN AKRAVAIALRNRWRR Q+ L++EI PKNILMIGPTGVGKTEIA
Sbjct: 7 EIVAELDKFIIGQNDAKRAVAIALRNRWRRMQLGEELRREIFPKNILMIGPTGVGKTEIA 66
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRL+ L+ APF+KIEATKFTEVGYVGRDV++IIRDL+D+++K TRE I +V++ AE+AA
Sbjct: 67 RRLSDLAGAPFLKIEATKFTEVGYVGRDVESIIRDLVDVAVKMTREKAIRQVKSLAEEAA 126
Query: 296 EDRVIDILVPSK----EKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTG 351
E+RV+D L+P + + +TRQ+FRK+LR G LD+KEIE+E++
Sbjct: 127 EERVLDALIPPARGGFQGEPTAEEKPTEKKESATRQLFRKKLRNGELDDKEIEVEVS-AH 185
Query: 352 PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411
P EIM PPGMEEM +Q++ + S + + R K+R++K+++A+++L +EEA KL++ED+I+
Sbjct: 186 PSFEIMGPPGMEEMVSQLQGIMSSMSSRRSKSRRLKVKDALRILGEEEAAKLVDEDQIKS 245
Query: 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD 471
A+ +VEQNGI+F+DEIDKI R D+SR GVQRDLLPLVEG+TV TKYG++KTD
Sbjct: 246 TALASVEQNGIVFIDEIDKIVKREGAVG-ADVSREGVQRDLLPLVEGSTVFTKYGMVKTD 304
Query: 472 HILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 531
HILFIASGAFH+AKPSDL+PELQGRFPIRVEL +L+ DF RI+T LT+QY LL
Sbjct: 305 HILFIASGAFHIAKPSDLVPELQGRFPIRVELKALTADDFVRILTEPKASLTEQYTELLK 364
Query: 532 TEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI---SLLV 588
TE + F DGI+RLAEIAY +N+R+ENIGARRL+T ME+LLEEVSF + + S+ +
Sbjct: 365 TENFGLSFTKDGIKRLAEIAYQVNDRSENIGARRLHTIMERLLEEVSFEATDKQGESITI 424
Query: 589 DADYVNSRLGDLSINEDLSRY 609
DADYVN +L L+ +EDLSRY
Sbjct: 425 DADYVNKQLKKLAEDEDLSRY 445
|
|
| TIGR_CMR|CPS_4370 CPS_4370 "heat shock protein HslVU, ATPase subunit HslU" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 259/437 (59%), Positives = 345/437 (78%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIV ELD +++GQ+ AKRAVAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVHELDSHIVGQSDAKRAVAIALRNRWRRMQLDKDLRNEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL++APFIK+EATKFTEVGYVG++V+TIIRDL D++IK +E E+++V+ AE+AA
Sbjct: 68 RRLAKLAHAPFIKVEATKFTEVGYVGKEVETIIRDLADMAIKMVKESEMDRVKHLAEEAA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+R++D+L+P + D +TRQIFRK+LREG LD+KEIE++L +E
Sbjct: 128 EERILDVLLPPA-RDGFGNDEKSDDS--NTRQIFRKKLREGKLDDKEIELDLAAPQVGVE 184
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IM+PPGME+MT+Q++ MF + + + RK+KI++A+K L +EEA K++N+D+I+QKAI+
Sbjct: 185 IMAPPGMEDMTSQLQNMFQNMSSEKTNKRKLKIKDALKALQEEEAAKIVNQDDIKQKAID 244
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
VEQNGI+F+DEIDKI R+ + D+SR GVQRDLLPLVEG+TV+TK+G+IKTDHILF
Sbjct: 245 AVEQNGIVFIDEIDKICKRADSSGGGDVSREGVQRDLLPLVEGSTVSTKHGMIKTDHILF 304
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAF + KPSDLIPELQGR PIRVEL +L+ DF RI+T LT+QY ALLATEG+
Sbjct: 305 IASGAFQMTKPSDLIPELQGRLPIRVELQALTADDFVRILTEPFASLTEQYIALLATEGV 364
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADY 592
+ F DDGI+ +A+ A+ +NE TENIGARRL+T ME+L+E++SFN++ S + +D Y
Sbjct: 365 SVTFTDDGIKAIADSAWQVNETTENIGARRLHTMMERLVEDLSFNADQRSGETISIDQAY 424
Query: 593 VNSRLGDLSINEDLSRY 609
V L ++ +EDLSR+
Sbjct: 425 VTKILSEVVKDEDLSRF 441
|
|
| UNIPROTKB|Q9KNQ7 hslU "ATP-dependent protease ATPase subunit HslU" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 253/437 (57%), Positives = 348/437 (79%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSEL++++IGQ++AKRAVAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+N PFIK+EATKFTEVGYVG++V++IIRDL D+++K T + + KV+ RAE+ A
Sbjct: 68 RRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRAEELA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+RV+D L+P + + STRQ+FRK+LREG L++KEIEI + +E
Sbjct: 128 EERVLDALLPPPRDAWGQAEQKEENS--STRQVFRKKLREGQLNDKEIEINVAVPQMGVE 185
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IM+PPGMEEMT Q++ +F + KK RK+KI++A+K L++EEA KL+N++E++++AI
Sbjct: 186 IMAPPGMEEMTNQLQGLFQNLAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELKEQAIY 245
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
NVE NGI+F+DEIDKI R + + D+SR GVQRDLLPL+EG+TV+TK+G+++TDHILF
Sbjct: 246 NVENNGIVFIDEIDKICKRG-EVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDHILF 304
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAF +AKPSDLIPELQGR PIRVEL++LS +DF RI+T LT+QY AL+ TE +
Sbjct: 305 IASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKTEQV 364
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADY 592
++F +DGI+++A+ A+ +NE TENIGARRL+T +E+L++E+SF++ + ++DA Y
Sbjct: 365 DVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVIDAAY 424
Query: 593 VNSRLGDLSINEDLSRY 609
V +RLG+L +EDLSR+
Sbjct: 425 VKARLGELVEDEDLSRF 441
|
|
| TIGR_CMR|VC_2674 VC_2674 "protease HslVU, ATPase subunit HslU" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
Identities = 253/437 (57%), Positives = 348/437 (79%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSEL++++IGQ++AKRAVAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELNRHIIGQDKAKRAVAIALRNRWRRMQLEESLRVEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+N PFIK+EATKFTEVGYVG++V++IIRDL D+++K T + + KV+ RAE+ A
Sbjct: 68 RRLAKLANVPFIKVEATKFTEVGYVGKEVESIIRDLTDVAVKLTHQQAMEKVKFRAEELA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+RV+D L+P + + STRQ+FRK+LREG L++KEIEI + +E
Sbjct: 128 EERVLDALLPPPRDAWGQAEQKEENS--STRQVFRKKLREGQLNDKEIEINVAVPQMGVE 185
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IM+PPGMEEMT Q++ +F + KK RK+KI++A+K L++EEA KL+N++E++++AI
Sbjct: 186 IMAPPGMEEMTNQLQGLFQNLAGDTKKKRKMKIKDALKALVEEEAAKLVNQEELKEQAIY 245
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
NVE NGI+F+DEIDKI R + + D+SR GVQRDLLPL+EG+TV+TK+G+++TDHILF
Sbjct: 246 NVENNGIVFIDEIDKICKRG-EVSGPDVSREGVQRDLLPLIEGSTVSTKHGMVRTDHILF 304
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAF +AKPSDLIPELQGR PIRVEL++LS +DF RI+T LT+QY AL+ TE +
Sbjct: 305 IASGAFQVAKPSDLIPELQGRLPIRVELEALSSNDFKRILTEPKASLTEQYVALMKTEQV 364
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADY 592
++F +DGI+++A+ A+ +NE TENIGARRL+T +E+L++E+SF++ + ++DA Y
Sbjct: 365 DVQFTEDGIKQIADAAWQVNETTENIGARRLHTVLERLMDEISFDATEKAGQAFVIDAAY 424
Query: 593 VNSRLGDLSINEDLSRY 609
V +RLG+L +EDLSR+
Sbjct: 425 VKARLGELVEDEDLSRF 441
|
|
| TIGR_CMR|SPO_3882 SPO_3882 "heat shock protein HslVU, ATPase subunit HslU" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1162 (414.1 bits), Expect = 5.4e-118, P = 5.4e-118
Identities = 243/440 (55%), Positives = 314/440 (71%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVA+ALRNRWRR+Q+ L+ E+ PKNILMIGPTGVGKTEI+
Sbjct: 8 EIVSELDRFIIGQKDAKRAVAVALRNRWRRKQLADDLRDEVYPKNILMIGPTGVGKTEIS 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+ APFIK+EATKFTEVGYVGRDV+ IIRDL D +I QTR++ ++VR RA AA
Sbjct: 68 RRLAKLARAPFIKVEATKFTEVGYVGRDVEQIIRDLADAAIVQTRDYMRDEVRARAHKAA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFXXXXXXISTRQIFRKRLREGALDNKEIEIELNDTG---P 352
EDRVI + + TR++FRK+L+ G LD+ IE+E+ D P
Sbjct: 128 EDRVITAIAGEDAREG-------------TREMFRKKLKSGELDDTVIELEVADGANPMP 174
Query: 353 HMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 412
EI PG + +F R +K+++ ++ ++LI EEA+KLL+++ + +
Sbjct: 175 MFEIPGQPGGNMGMMNLGDLFGKAFAGRTTRKKLRVADSYEILIGEEADKLLDDELVNKT 234
Query: 413 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH 472
A+ VEQNGI+FLDEIDK+ RS D+SR GVQRDLLPL+EGTTV+TKYG IKTDH
Sbjct: 235 ALEAVEQNGIVFLDEIDKVCARSDARG-ADVSREGVQRDLLPLIEGTTVSTKYGPIKTDH 293
Query: 473 ILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 532
ILFIASGAFH+AKPSDL+PELQGR PIRVEL +L+ DF RI+T T+ LT QY AL+ T
Sbjct: 294 ILFIASGAFHIAKPSDLLPELQGRLPIRVELRALTEEDFVRILTETDNALTLQYTALMGT 353
Query: 533 EGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVD 589
E + + F DGI LA IA +N+ ENIGARRLYT ME++ EE+SF + + S + VD
Sbjct: 354 ENVAVTFTPDGIAALAHIAAEVNQSVENIGARRLYTVMERVFEELSFTAPDRSGEAVTVD 413
Query: 590 ADYVNSRLGDLSINEDLSRY 609
A +V++ LG+L+ + DLSRY
Sbjct: 414 AGFVDTNLGELTRSTDLSRY 433
|
|
| TIGR_CMR|CHY_1790 CHY_1790 "heat shock protein HslVU, ATPase subunit HslU" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
Identities = 227/459 (49%), Positives = 328/459 (71%)
Query: 170 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 229
++L +IV LDKY+IGQ AK+AVA+ALRNR+RR+ + L+ EI PKNILMIGPTGV
Sbjct: 2 ENLTPRQIVEYLDKYIIGQEAAKKAVAVALRNRYRRKLLPPHLKDEIIPKNILMIGPTGV 61
Query: 230 GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRT 289
GKTEIARRLAKL APF+K+EATKFTEVGYVGRDV+ +IRDL++ S++ RE +I V
Sbjct: 62 GKTEIARRLAKLIKAPFVKVEATKFTEVGYVGRDVEGMIRDLVETSLRMVREEKIKMVED 121
Query: 290 RAEDAAEDRVIDILVPSKEKSNLDTDFXXXXXXIST---------------RQIFRKRLR 334
+A + A +R+ +I++P+ +K N+ F I R+ + +++
Sbjct: 122 KAYNLAVERLSEIMIPNPKKENIKNPFEMFFGGIREDAAKTDPAYDELNYRRRELQDKIK 181
Query: 335 EGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIK 393
+G LDN+ +EIE+ + P +E+ G+EEM + + + R+K R++ ++EA+K
Sbjct: 182 KGFLDNEMVEIEVEEQKTPMVEVFGVGGIEEMGLNFQDILGGLIPPRRKKRRVTVKEALK 241
Query: 394 LLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLL 453
+L +EA KL++ DE+Q++AI E++GI+FLDEIDKI + + + D+SR GVQRD+L
Sbjct: 242 ILTQQEAQKLIDMDEVQREAIKRAEEDGIVFLDEIDKIAS-TGNTHGPDVSRGGVQRDIL 300
Query: 454 PLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTR 513
P+VEG+TV TKYG +KTDHILFIA+GAFH++KPSDLIPELQGRFPIRVEL SL++ DF +
Sbjct: 301 PIVEGSTVLTKYGPVKTDHILFIAAGAFHMSKPSDLIPELQGRFPIRVELKSLTVEDFKK 360
Query: 514 IMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573
I+T LTKQY LLATEG+ ++F +D ++ +A++AY +NER ENIGARRL T +EK+
Sbjct: 361 ILTVPENALTKQYVELLATEGVNLKFTEDSLEEIAKMAYTVNERNENIGARRLITILEKV 420
Query: 574 LEEVSFNSNNI---SLLVDADYVNSRLGDLSINEDLSRY 609
LE++SFN+ + ++++D +V +L ++ + DLSRY
Sbjct: 421 LEDLSFNAPEMWGQTVVIDRKFVQDKLSEIVHDSDLSRY 459
|
|
| TIGR_CMR|NSE_0177 NSE_0177 "heat shock protein HslVU, ATPase subunit HslU" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 227/443 (51%), Positives = 306/443 (69%)
Query: 177 IVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIAR 236
+VS LD++V+GQ AK+ +AIA+RNRWRR I PL EI PKNILMIGPTGVGKTEIAR
Sbjct: 32 LVSYLDRFVVGQKLAKKKIAIAIRNRWRRNNIPKPLHDEIIPKNILMIGPTGVGKTEIAR 91
Query: 237 RLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 296
R+AKLS APFIK+EATKFTEVGYVGRDV++IIRDL+D ++ Q ++ + + AE++A+
Sbjct: 92 RVAKLSGAPFIKVEATKFTEVGYVGRDVESIIRDLVDSAVAQVKDQKRKQFSKEAEESAK 151
Query: 297 DRVIDILVPSKEKSNLDTDFXXXXXXI-STRQIFRKRLREGALDNKEIEIELNDTG---- 351
++++D LV K D D R +F K+L EG LD+ EIEI + +
Sbjct: 152 EKILDALVGKKNTE--DDDLADGEDEKHDARAVFEKKLDEGKLDDAEIEINVRELPQNVF 209
Query: 352 PHMEIMSPPGMEEMTAQIKTMFS-VIGNHRK-KTRKIKIREAIKLLIDEEANKLLNEDEI 409
P M++ PG + I M S V G ++K K +++K+++A K+L D E L +ED I
Sbjct: 210 PTMDVPGMPGTQIGMMNIGDMMSKVFGANKKFKRKRVKVKDARKILADAEVEDLFDEDAI 269
Query: 410 QQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK 469
++A++ V G++F+DEIDKI R+ +++R GVQRDLLPL+EGTTV TKYG++K
Sbjct: 270 IKEALDLVTNRGMVFIDEIDKICARTEVRG--EVNREGVQRDLLPLLEGTTVVTKYGVVK 327
Query: 470 TDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEAL 529
TDHILF+ SGAFH AKPSDL+PELQGR PIRVELDSL + D RI+T T L KQY AL
Sbjct: 328 TDHILFVGSGAFHFAKPSDLLPELQGRLPIRVELDSLDVEDMIRILTETESSLLKQYCAL 387
Query: 530 LATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSN-NI--SL 586
L TEG+ +EF DG++ +AE A +N ENIGARRL+T ME LLEE++F +N N+ +
Sbjct: 388 LETEGVSLEFTKDGVRAIAEAAITVNNEVENIGARRLHTIMETLLEEINFEANDNVGKTF 447
Query: 587 LVDADYVNSRLGDLSINEDLSRY 609
+D +YV+ L + DLS++
Sbjct: 448 SIDREYVDKHLQTIIKKLDLSKF 470
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8Y3D8 | HSLU_RALSO | No assigned EC number | 0.6614 | 0.3751 | 0.9864 | yes | N/A |
| A1TYU5 | HSLU_MARAV | No assigned EC number | 0.6315 | 0.3699 | 0.9729 | yes | N/A |
| Q0AD37 | HSLU_NITEC | No assigned EC number | 0.6727 | 0.3699 | 0.9729 | yes | N/A |
| Q2Y5Y6 | HSLU_NITMU | No assigned EC number | 0.6796 | 0.3699 | 0.9729 | yes | N/A |
| Q3JXA4 | HSLU_BURP1 | No assigned EC number | 0.6801 | 0.3759 | 0.9798 | yes | N/A |
| Q5P503 | HSLU_AROAE | No assigned EC number | 0.6704 | 0.3690 | 0.9728 | yes | N/A |
| B1YPR3 | HSLU_BURA4 | No assigned EC number | 0.6779 | 0.3759 | 0.9798 | yes | N/A |
| Q39BY0 | HSLU_BURS3 | No assigned EC number | 0.6801 | 0.3759 | 0.9798 | yes | N/A |
| Q5QV36 | HSLU_IDILO | No assigned EC number | 0.6131 | 0.3716 | 0.9622 | yes | N/A |
| C1DHS0 | HSLU_AZOVD | No assigned EC number | 0.6188 | 0.3742 | 0.9775 | yes | N/A |
| Q7VUJ9 | HSLU_BORPE | No assigned EC number | 0.6659 | 0.3690 | 0.9684 | yes | N/A |
| Q0BAX8 | HSLU_BURCM | No assigned EC number | 0.6801 | 0.3759 | 0.9798 | yes | N/A |
| Q63YI4 | HSLU_BURPS | No assigned EC number | 0.6801 | 0.3759 | 0.9798 | yes | N/A |
| Q146X0 | HSLU_BURXL | No assigned EC number | 0.6711 | 0.3742 | 0.9732 | yes | N/A |
| Q62F00 | HSLU_BURMA | No assigned EC number | 0.6824 | 0.3759 | 0.9798 | yes | N/A |
| B2T1N8 | HSLU_BURPP | No assigned EC number | 0.6756 | 0.3742 | 0.9732 | yes | N/A |
| A3MRR3 | HSLU_BURM7 | No assigned EC number | 0.6824 | 0.3759 | 0.9798 | yes | N/A |
| A1WC16 | HSLU_ACISJ | No assigned EC number | 0.6568 | 0.3759 | 0.9820 | yes | N/A |
| A0KBG3 | HSLU_BURCH | No assigned EC number | 0.6779 | 0.3759 | 0.9798 | yes | N/A |
| Q47JL8 | HSLU_DECAR | No assigned EC number | 0.6674 | 0.3708 | 0.9686 | yes | N/A |
| B2AGB7 | HSLU_CUPTR | No assigned EC number | 0.6748 | 0.3751 | 0.9864 | yes | N/A |
| B9MFS2 | HSLU_ACIET | No assigned EC number | 0.6546 | 0.3759 | 0.9820 | yes | N/A |
| A1TKC1 | HSLU_ACIAC | No assigned EC number | 0.6538 | 0.3699 | 0.9840 | yes | N/A |
| A4JIR3 | HSLU_BURVG | No assigned EC number | 0.6846 | 0.3759 | 0.9798 | yes | N/A |
| B8GTA1 | HSLU_THISH | No assigned EC number | 0.6330 | 0.3716 | 0.9752 | yes | N/A |
| A3NQ62 | HSLU_BURP0 | No assigned EC number | 0.6824 | 0.3759 | 0.9798 | yes | N/A |
| Q7W216 | HSLU_BORPA | No assigned EC number | 0.6636 | 0.3690 | 0.9684 | yes | N/A |
| Q7WQZ4 | HSLU_BORBR | No assigned EC number | 0.6659 | 0.3690 | 0.9684 | yes | N/A |
| B0KM26 | HSLU_PSEPG | No assigned EC number | 0.6143 | 0.3751 | 0.9776 | yes | N/A |
| A1K2I6 | HSLU_AZOSB | No assigned EC number | 0.6681 | 0.3699 | 0.9729 | yes | N/A |
| Q2L1D0 | HSLU_BORA1 | No assigned EC number | 0.6538 | 0.3733 | 0.9797 | yes | N/A |
| Q2T277 | HSLU_BURTA | No assigned EC number | 0.6794 | 0.3768 | 0.9821 | yes | N/A |
| A5WA35 | HSLU_PSEP1 | No assigned EC number | 0.6165 | 0.3751 | 0.9776 | yes | N/A |
| Q476Y3 | HSLU_CUPPJ | No assigned EC number | 0.6726 | 0.3751 | 0.9864 | yes | N/A |
| Q82SP6 | HSLU_NITEU | No assigned EC number | 0.6636 | 0.3699 | 0.9729 | yes | N/A |
| Q87V00 | HSLU_PSESM | No assigned EC number | 0.6331 | 0.3725 | 0.9752 | yes | N/A |
| Q2S9P3 | HSLU_HAHCH | No assigned EC number | 0.6402 | 0.3733 | 0.9841 | yes | N/A |
| Q1BSM8 | HSLU_BURCA | No assigned EC number | 0.6779 | 0.3759 | 0.9798 | yes | N/A |
| B1K0G2 | HSLU_BURCC | No assigned EC number | 0.6779 | 0.3759 | 0.9798 | yes | N/A |
| Q0KF69 | HSLU_CUPNH | No assigned EC number | 0.6793 | 0.3751 | 0.9864 | yes | N/A |
| A1WRK1 | HSLU_VEREI | No assigned EC number | 0.6628 | 0.3725 | 0.9841 | yes | N/A |
| B2U7X3 | HSLU_RALPJ | No assigned EC number | 0.6726 | 0.3751 | 0.9864 | yes | N/A |
| A2S869 | HSLU_BURM9 | No assigned EC number | 0.6824 | 0.3759 | 0.9798 | yes | N/A |
| B4E7Z1 | HSLU_BURCJ | No assigned EC number | 0.6824 | 0.3759 | 0.9798 | yes | N/A |
| Q88D27 | HSLU_PSEPK | No assigned EC number | 0.6165 | 0.3751 | 0.9776 | yes | N/A |
| Q7P112 | HSLU_CHRVO | No assigned EC number | 0.6492 | 0.3725 | 0.9687 | yes | N/A |
| B2JJX7 | HSLU_BURP8 | No assigned EC number | 0.6801 | 0.3759 | 0.9798 | yes | N/A |
| A3N4H2 | HSLU_BURP6 | No assigned EC number | 0.6824 | 0.3759 | 0.9798 | yes | N/A |
| A9IH53 | HSLU_BORPD | No assigned EC number | 0.6447 | 0.3733 | 0.9797 | yes | N/A |
| A1V7K6 | HSLU_BURMS | No assigned EC number | 0.6824 | 0.3759 | 0.9798 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.25 | 0.691 |
| 3rd Layer | 2.7.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1165 | |||
| PRK05201 | 443 | PRK05201, hslU, ATP-dependent protease ATP-binding | 0.0 | |
| PRK05201 | 443 | PRK05201, hslU, ATP-dependent protease ATP-binding | 0.0 | |
| COG1220 | 444 | COG1220, HslU, ATP-dependent protease HslVU (ClpYQ | 0.0 | |
| COG1220 | 444 | COG1220, HslU, ATP-dependent protease HslVU (ClpYQ | 0.0 | |
| TIGR00390 | 441 | TIGR00390, hslU, ATP-dependent protease HslVU, ATP | 0.0 | |
| TIGR00390 | 441 | TIGR00390, hslU, ATP-dependent protease HslVU, ATP | 1e-176 | |
| PRK05456 | 172 | PRK05456, PRK05456, ATP-dependent protease subunit | 3e-93 | |
| PRK05456 | 172 | PRK05456, PRK05456, ATP-dependent protease subunit | 3e-93 | |
| TIGR03692 | 171 | TIGR03692, ATP_dep_HslV, ATP-dependent protease Hs | 9e-84 | |
| TIGR03692 | 171 | TIGR03692, ATP_dep_HslV, ATP-dependent protease Hs | 9e-84 | |
| cd01913 | 171 | cd01913, protease_HslV, Protease HslV and the ATPa | 1e-80 | |
| cd01913 | 171 | cd01913, protease_HslV, Protease HslV and the ATPa | 1e-80 | |
| COG5405 | 178 | COG5405, HslV, ATP-dependent protease HslVU (ClpYQ | 3e-77 | |
| COG5405 | 178 | COG5405, HslV, ATP-dependent protease HslVU (ClpYQ | 3e-77 | |
| PRK05342 | 412 | PRK05342, clpX, ATP-dependent protease ATP-binding | 2e-28 | |
| PRK05342 | 412 | PRK05342, clpX, ATP-dependent protease ATP-binding | 1e-25 | |
| PRK05342 | 412 | PRK05342, clpX, ATP-dependent protease ATP-binding | 1e-25 | |
| PRK05342 | 412 | PRK05342, clpX, ATP-dependent protease ATP-binding | 1e-24 | |
| COG1219 | 408 | COG1219, ClpX, ATP-dependent protease Clp, ATPase | 1e-23 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 3e-23 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 3e-23 | |
| COG1219 | 408 | COG1219, ClpX, ATP-dependent protease Clp, ATPase | 7e-23 | |
| COG1219 | 408 | COG1219, ClpX, ATP-dependent protease Clp, ATPase | 7e-23 | |
| cd01906 | 182 | cd01906, proteasome_protease_HslV, proteasome_prot | 1e-21 | |
| cd01906 | 182 | cd01906, proteasome_protease_HslV, proteasome_prot | 1e-21 | |
| TIGR00382 | 413 | TIGR00382, clpX, endopeptidase Clp ATP-binding reg | 1e-20 | |
| COG1219 | 408 | COG1219, ClpX, ATP-dependent protease Clp, ATPase | 9e-20 | |
| TIGR00382 | 413 | TIGR00382, clpX, endopeptidase Clp ATP-binding reg | 6e-19 | |
| TIGR00382 | 413 | TIGR00382, clpX, endopeptidase Clp ATP-binding reg | 6e-19 | |
| TIGR00382 | 413 | TIGR00382, clpX, endopeptidase Clp ATP-binding reg | 2e-18 | |
| pfam00227 | 188 | pfam00227, Proteasome, Proteasome subunit | 3e-18 | |
| pfam00227 | 188 | pfam00227, Proteasome, Proteasome subunit | 3e-18 | |
| cd01901 | 164 | cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term | 4e-16 | |
| cd01901 | 164 | cd01901, Ntn_hydrolase, The Ntn hydrolases (N-term | 4e-16 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 4e-08 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 4e-08 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 1e-07 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 1e-07 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 1e-06 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 1e-06 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 8e-06 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 8e-06 | |
| smart01086 | 90 | smart01086, ClpB_D2-small, C-terminal, D2-small do | 3e-05 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 4e-05 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 4e-05 | |
| pfam01078 | 207 | pfam01078, Mg_chelatase, Magnesium chelatase, subu | 5e-05 | |
| pfam01078 | 207 | pfam01078, Mg_chelatase, Magnesium chelatase, subu | 5e-05 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 1e-04 | |
| pfam13207 | 114 | pfam13207, AAA_17, AAA domain | 1e-04 | |
| COG0638 | 236 | COG0638, PRE1, 20S proteasome, alpha and beta subu | 1e-04 | |
| PRK10865 | 857 | PRK10865, PRK10865, protein disaggregation chapero | 1e-04 | |
| PRK10865 | 857 | PRK10865, PRK10865, protein disaggregation chapero | 1e-04 | |
| COG0638 | 236 | COG0638, PRE1, 20S proteasome, alpha and beta subu | 2e-04 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 3e-04 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 3e-04 | |
| TIGR02639 | 730 | TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi | 3e-04 | |
| TIGR02639 | 730 | TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi | 3e-04 | |
| COG0606 | 490 | COG0606, COG0606, Predicted ATPase with chaperone | 4e-04 | |
| COG0606 | 490 | COG0606, COG0606, Predicted ATPase with chaperone | 4e-04 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 5e-04 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 5e-04 | |
| TIGR03346 | 852 | TIGR03346, chaperone_ClpB, ATP-dependent chaperone | 7e-04 | |
| TIGR03346 | 852 | TIGR03346, chaperone_ClpB, ATP-dependent chaperone | 7e-04 | |
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 7e-04 | |
| pfam07728 | 135 | pfam07728, AAA_5, AAA domain (dynein-related subfa | 7e-04 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 7e-04 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 7e-04 | |
| CHL00095 | 821 | CHL00095, clpC, Clp protease ATP binding subunit | 8e-04 | |
| CHL00095 | 821 | CHL00095, clpC, Clp protease ATP binding subunit | 8e-04 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 9e-04 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 9e-04 | |
| PRK00131 | 175 | PRK00131, aroK, shikimate kinase; Reviewed | 0.002 | |
| PRK00131 | 175 | PRK00131, aroK, shikimate kinase; Reviewed | 0.002 | |
| cd00464 | 154 | cd00464, SK, Shikimate kinase (SK) is the fifth en | 0.002 | |
| cd00464 | 154 | cd00464, SK, Shikimate kinase (SK) is the fifth en | 0.002 | |
| COG0542 | 786 | COG0542, clpA, ATP-binding subunits of Clp proteas | 0.003 | |
| COG0542 | 786 | COG0542, clpA, ATP-binding subunits of Clp proteas | 0.003 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 0.003 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 0.003 | |
| pfam00158 | 168 | pfam00158, Sigma54_activat, Sigma-54 interaction d | 0.003 | |
| pfam00158 | 168 | pfam00158, Sigma54_activat, Sigma-54 interaction d | 0.003 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 0.004 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 |
| >gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Score = 793 bits (2052), Expect = 0.0
Identities = 285/437 (65%), Positives = 359/437 (82%), Gaps = 6/437 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELDKY+IGQ+ AKRAVAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVGRDV++IIRDL++I++K RE + KVR +AE+AA
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHME 355
E+R++D L+P + + + + E + TRQ FRK+LREG LD+KEIEIE+ + P ME
Sbjct: 128 EERILDALLPPAKNNWGEEEEKEEISA--TRQKFRKKLREGELDDKEIEIEVAEAAPMME 185
Query: 356 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 415
IM PPGMEEMT Q++ MF +G +KK RK+K++EA K+LI+EEA KL++ +EI+Q+AI
Sbjct: 186 IMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIE 245
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 475
VEQNGI+F+DEIDKI R + D+SR GVQRDLLPLVEG+TV+TKYG++KTDHILF
Sbjct: 246 RVEQNGIVFIDEIDKIAARGGSSGP-DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILF 304
Query: 476 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
IASGAFH++KPSDLIPELQGRFPIRVELD+L+ DF RI+T L KQY+ALLATEG+
Sbjct: 305 IASGAFHVSKPSDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGV 364
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADY 592
+EF DD I+R+AEIAY +NE+TENIGARRL+T MEKLLE++SF + ++S + +DA Y
Sbjct: 365 TLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDMSGETVTIDAAY 424
Query: 593 VNSRLGDLSINEDLSRY 609
V+ +LGDL +EDLSRY
Sbjct: 425 VDEKLGDLVKDEDLSRY 441
|
Length = 443 |
| >gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Score = 720 bits (1861), Expect = 0.0
Identities = 256/386 (66%), Positives = 319/386 (82%), Gaps = 3/386 (0%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELDKY+IGQ+ AKRAVAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIA 67
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVGRDV++IIRDL++I++K RE + KVR +AE+AA
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAA 127
Query: 894 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHME 953
E+R++D L+P + + + + E + TRQ FRK+LREG LD+KEIEIE+ + P ME
Sbjct: 128 EERILDALLPPAKNNWGEEEEKEEISA--TRQKFRKKLREGELDDKEIEIEVAEAAPMME 185
Query: 954 IMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAIN 1013
IM PPGMEEMT Q++ MF +G +KK RK+K++EA K+LI+EEA KL++ +EI+Q+AI
Sbjct: 186 IMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIE 245
Query: 1014 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILF 1073
VEQNGI+F+DEIDKI R + D+SR GVQRDLLPLVEG+TV+TKYG++KTDHILF
Sbjct: 246 RVEQNGIVFIDEIDKIAARGGSSGP-DVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILF 304
Query: 1074 IASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 1133
IASGAFH++KPSDLIPELQGRFPIRVELD+L+ DF RI+T L KQY+ALLATEG+
Sbjct: 305 IASGAFHVSKPSDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGV 364
Query: 1134 KIEFVDDGIQRLAEIAYCINERTENI 1159
+EF DD I+R+AEIAY +NE+TENI
Sbjct: 365 TLEFTDDAIRRIAEIAYQVNEKTENI 390
|
Length = 443 |
| >gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 685 bits (1770), Expect = 0.0
Identities = 278/438 (63%), Positives = 354/438 (80%), Gaps = 7/438 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+Y+IGQ+ AK+AVAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+ APFIK+EATKFTEVGYVGRDV++IIRDL++I++K RE +I KV+ +AE+ A
Sbjct: 68 RRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTG-PHM 354
E+R++D LVP + ++ E++ TR+ FRK+LREG LD+KEIEIE+ D G P
Sbjct: 128 EERILDALVPPAKNFWGQSENKQESSA--TREKFRKKLREGELDDKEIEIEVADKGPPGF 185
Query: 355 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 414
EIM PPGMEEMT ++ MF +G +KK RK+K++EA KLLI+EEA+KL++++EI+Q+AI
Sbjct: 186 EIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAI 245
Query: 415 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 474
+ EQNGI+F+DEIDKI R D+SR GVQRDLLPLVEG+TV+TKYG +KTDHIL
Sbjct: 246 DAAEQNGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHIL 304
Query: 475 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 534
FIASGAFH+AKPSDLIPELQGRFPIRVELD+L+ DF RI+T L KQY+ALL TEG
Sbjct: 305 FIASGAFHVAKPSDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEG 364
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN---SNNISLLVDAD 591
+++EF DD I+R+AEIAY +NE+TENIGARRL+T +E+LLE++SF + + +DA+
Sbjct: 365 VELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFEAPDMSGQKVTIDAE 424
Query: 592 YVNSRLGDLSINEDLSRY 609
YV +LGDL NEDLSR+
Sbjct: 425 YVEEKLGDLVANEDLSRF 442
|
Length = 444 |
| >gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 621 bits (1603), Expect = 0.0
Identities = 252/387 (65%), Positives = 317/387 (81%), Gaps = 4/387 (1%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELD+Y+IGQ+ AK+AVAIALRNRWRR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIA 67
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+ APFIK+EATKFTEVGYVGRDV++IIRDL++I++K RE +I KV+ +AE+ A
Sbjct: 68 RRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELA 127
Query: 894 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTG-PHM 952
E+R++D LVP + ++ E++ TR+ FRK+LREG LD+KEIEIE+ D G P
Sbjct: 128 EERILDALVPPAKNFWGQSENKQESSA--TREKFRKKLREGELDDKEIEIEVADKGPPGF 185
Query: 953 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 1012
EIM PPGMEEMT ++ MF +G +KK RK+K++EA KLLI+EEA+KL++++EI+Q+AI
Sbjct: 186 EIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAI 245
Query: 1013 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 1072
+ EQNGI+F+DEIDKI R D+SR GVQRDLLPLVEG+TV+TKYG +KTDHIL
Sbjct: 246 DAAEQNGIVFIDEIDKIAKRGGSGGP-DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHIL 304
Query: 1073 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 1132
FIASGAFH+AKPSDLIPELQGRFPIRVELD+L+ DF RI+T L KQY+ALL TEG
Sbjct: 305 FIASGAFHVAKPSDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEG 364
Query: 1133 IKIEFVDDGIQRLAEIAYCINERTENI 1159
+++EF DD I+R+AEIAY +NE+TENI
Sbjct: 365 VELEFTDDAIKRIAEIAYQVNEKTENI 391
|
Length = 444 |
| >gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Score = 574 bits (1481), Expect = 0.0
Identities = 270/438 (61%), Positives = 348/438 (79%), Gaps = 7/438 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIV+ELDKY+IGQ+ AK++VAIALRNR+RR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 5 EIVAELDKYIIGQDEAKKSVAIALRNRYRRSQLPEELKDEVTPKNILMIGPTGVGKTEIA 64
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVGRDV++++RDL+DI++K +E I KVR RAE+ A
Sbjct: 65 RRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLVDIAVKLVKEEMIEKVRDRAEERA 124
Query: 296 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 354
E+R++D L+P + + + S R+ FRK+LREG LD+KEIEIE++ P
Sbjct: 125 EERIVDSLLPPAKNQWGNME--EIQEEESVREAFRKKLREGELDDKEIEIEVSAKMPSGI 182
Query: 355 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 414
EIM+PPGMEEMT ++++F +G +KK RK+KI+EA K LI EEA KL++ +EI+Q+AI
Sbjct: 183 EIMAPPGMEEMTMNLQSLFQNLGPDKKKKRKLKIKEAKKALIAEEAAKLVDPEEIKQEAI 242
Query: 415 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 474
+ VEQ+GIIF+DEIDKI + + D+SR GVQRDLLP+VEG+TVNTKYG +KTDHIL
Sbjct: 243 DRVEQSGIIFIDEIDKIAKKGESSGA-DVSREGVQRDLLPIVEGSTVNTKYGSVKTDHIL 301
Query: 475 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 534
FIA+GAFHLAKPSDLIPELQGRFPIRVEL +L+I DF RI+T L KQY+ALL TEG
Sbjct: 302 FIAAGAFHLAKPSDLIPELQGRFPIRVELKALTIDDFERILTEPKNSLIKQYQALLKTEG 361
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISL---LVDAD 591
+ I F D+ I+R+AE+AY +N++TENIGARRL+T ME+LLE++SF + + S + AD
Sbjct: 362 VNIAFSDEAIKRIAELAYNVNQKTENIGARRLHTVMERLLEDISFEAPDSSGQKVTITAD 421
Query: 592 YVNSRLGDLSINEDLSRY 609
YVN +LG L +EDLSR+
Sbjct: 422 YVNKKLGILVADEDLSRF 439
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in MEDLINE:98389714, is Ser in other members of the seed alignment [Protein fate, Protein folding and stabilization]. Length = 441 |
| >gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Score = 523 bits (1349), Expect = e-176
Identities = 243/387 (62%), Positives = 311/387 (80%), Gaps = 4/387 (1%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIV+ELDKY+IGQ+ AK++VAIALRNR+RR Q+ L+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 5 EIVAELDKYIIGQDEAKKSVAIALRNRYRRSQLPEELKDEVTPKNILMIGPTGVGKTEIA 64
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVGRDV++++RDL+DI++K +E I KVR RAE+ A
Sbjct: 65 RRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLVDIAVKLVKEEMIEKVRDRAEERA 124
Query: 894 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 952
E+R++D L+P + + + S R+ FRK+LREG LD+KEIEIE++ P
Sbjct: 125 EERIVDSLLPPAKNQWGNME--EIQEEESVREAFRKKLREGELDDKEIEIEVSAKMPSGI 182
Query: 953 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 1012
EIM+PPGMEEMT ++++F +G +KK RK+KI+EA K LI EEA KL++ +EI+Q+AI
Sbjct: 183 EIMAPPGMEEMTMNLQSLFQNLGPDKKKKRKLKIKEAKKALIAEEAAKLVDPEEIKQEAI 242
Query: 1013 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 1072
+ VEQ+GIIF+DEIDKI + + D+SR GVQRDLLP+VEG+TVNTKYG +KTDHIL
Sbjct: 243 DRVEQSGIIFIDEIDKIAKKGESSGA-DVSREGVQRDLLPIVEGSTVNTKYGSVKTDHIL 301
Query: 1073 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 1132
FIA+GAFHLAKPSDLIPELQGRFPIRVEL +L+I DF RI+T L KQY+ALL TEG
Sbjct: 302 FIAAGAFHLAKPSDLIPELQGRFPIRVELKALTIDDFERILTEPKNSLIKQYQALLKTEG 361
Query: 1133 IKIEFVDDGIQRLAEIAYCINERTENI 1159
+ I F D+ I+R+AE+AY +N++TENI
Sbjct: 362 VNIAFSDEAIKRIAELAYNVNQKTENI 388
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in MEDLINE:98389714, is Ser in other members of the seed alignment [Protein fate, Protein folding and stabilization]. Length = 441 |
| >gnl|CDD|235477 PRK05456, PRK05456, ATP-dependent protease subunit HslV; Provisional | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 3e-93
Identities = 105/156 (67%), Positives = 132/156 (84%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTTIL+VRR KV++ GDGQVT GN +MK +A+KVR+LY +VLAG AGSTADAFTL +
Sbjct: 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFER 60
Query: 80 FEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGI 139
FEA LE+HQGNL+RA+VELAK+WR DR LRRLEAML+ A++E +LII+GNGDV+EPE+GI
Sbjct: 61 FEAKLEEHQGNLLRAAVELAKDWRTDRYLRRLEAMLIVADKEHSLIISGNGDVIEPEDGI 120
Query: 140 GAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 175
AIGSGG +A +AA+AL ENT+L +EI +K+L IA
Sbjct: 121 IAIGSGGNYALAAARALLENTDLSAEEIAEKALKIA 156
|
Length = 172 |
| >gnl|CDD|235477 PRK05456, PRK05456, ATP-dependent protease subunit HslV; Provisional | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 3e-93
Identities = 105/156 (67%), Positives = 132/156 (84%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTTIL+VRR KV++ GDGQVT GN +MK +A+KVR+LY +VLAG AGSTADAFTL +
Sbjct: 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFER 60
Query: 678 FEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGI 737
FEA LE+HQGNL+RA+VELAK+WR DR LRRLEAML+ A++E +LII+GNGDV+EPE+GI
Sbjct: 61 FEAKLEEHQGNLLRAAVELAKDWRTDRYLRRLEAMLIVADKEHSLIISGNGDVIEPEDGI 120
Query: 738 GAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 773
AIGSGG +A +AA+AL ENT+L +EI +K+L IA
Sbjct: 121 IAIGSGGNYALAAARALLENTDLSAEEIAEKALKIA 156
|
Length = 172 |
| >gnl|CDD|211862 TIGR03692, ATP_dep_HslV, ATP-dependent protease HslVU, peptidase subunit | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 9e-84
Identities = 99/155 (63%), Positives = 128/155 (82%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTIL+VRR KV + GDGQVT GN +MK +A+KVR+LY +VLAG AGSTADAFTL + F
Sbjct: 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 140
EA LE++QGNL RA+VELAK+WR DR LRRLEAML+ A++ET+L+I+G GDV+EP++GI
Sbjct: 61 EAKLEEYQGNLTRAAVELAKDWRTDRYLRRLEAMLIVADKETSLLISGTGDVIEPDDGIA 120
Query: 141 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 175
AIGSGG +A +AA+AL NT+L +EI +++L IA
Sbjct: 121 AIGSGGNYALAAARALLRNTDLSAEEIAREALKIA 155
|
The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 171 |
| >gnl|CDD|211862 TIGR03692, ATP_dep_HslV, ATP-dependent protease HslVU, peptidase subunit | Back alignment and domain information |
|---|
Score = 269 bits (690), Expect = 9e-84
Identities = 99/155 (63%), Positives = 128/155 (82%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTIL+VRR KV + GDGQVT GN +MK +A+KVR+LY +VLAG AGSTADAFTL + F
Sbjct: 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 738
EA LE++QGNL RA+VELAK+WR DR LRRLEAML+ A++ET+L+I+G GDV+EP++GI
Sbjct: 61 EAKLEEYQGNLTRAAVELAKDWRTDRYLRRLEAMLIVADKETSLLISGTGDVIEPDDGIA 120
Query: 739 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 773
AIGSGG +A +AA+AL NT+L +EI +++L IA
Sbjct: 121 AIGSGGNYALAAARALLRNTDLSAEEIAREALKIA 155
|
The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 171 |
| >gnl|CDD|238894 cd01913, protease_HslV, Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome | Back alignment and domain information |
|---|
Score = 260 bits (668), Expect = 1e-80
Identities = 97/155 (62%), Positives = 129/155 (83%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTIL+VR+ KV + GDGQVT GN +MK +A+KVR+LY +V+AG AGSTADAFTL + F
Sbjct: 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 140
EA LE++ GNL+RA+VELAK+WR DR LRRLEAML+ A++E TL+I+GNGDV+EP++GI
Sbjct: 61 EAKLEQYPGNLLRAAVELAKDWRTDRYLRRLEAMLIVADKEHTLLISGNGDVIEPDDGIA 120
Query: 141 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 175
AIGSGG +A +AA+AL ++T+L +EI +K+L IA
Sbjct: 121 AIGSGGNYALAAARALLDHTDLSAEEIARKALKIA 155
|
HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis. Length = 171 |
| >gnl|CDD|238894 cd01913, protease_HslV, Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome | Back alignment and domain information |
|---|
Score = 260 bits (668), Expect = 1e-80
Identities = 97/155 (62%), Positives = 129/155 (83%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTIL+VR+ KV + GDGQVT GN +MK +A+KVR+LY +V+AG AGSTADAFTL + F
Sbjct: 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 738
EA LE++ GNL+RA+VELAK+WR DR LRRLEAML+ A++E TL+I+GNGDV+EP++GI
Sbjct: 61 EAKLEQYPGNLLRAAVELAKDWRTDRYLRRLEAMLIVADKEHTLLISGNGDVIEPDDGIA 120
Query: 739 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 773
AIGSGG +A +AA+AL ++T+L +EI +K+L IA
Sbjct: 121 AIGSGGNYALAAARALLDHTDLSAEEIARKALKIA 155
|
HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis. Length = 171 |
| >gnl|CDD|227692 COG5405, HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 3e-77
Identities = 103/168 (61%), Positives = 129/168 (76%), Gaps = 3/168 (1%)
Query: 17 KFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTL 76
F TTI++VR+ KV + GDGQVT GN +MK +A+KVR+LY +VLAG AGSTADAFTL
Sbjct: 1 TFHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTL 60
Query: 77 LDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPE 136
+ FEA LE++QG+L RA+VELAK+WR D+ LR+LEAMLL A++ LIITGNGDV+EPE
Sbjct: 61 FERFEAKLEQYQGDLFRAAVELAKDWRTDKYLRKLEAMLLVADKTHILIITGNGDVIEPE 120
Query: 137 NGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY 184
+ I AIGSGG +A SAA+AL ENTEL EI +KSL IA ++ Y
Sbjct: 121 DDIIAIGSGGNYALSAARALMENTELSAREIAEKSLKIA---GDICIY 165
|
Length = 178 |
| >gnl|CDD|227692 COG5405, HslV, ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 3e-77
Identities = 103/168 (61%), Positives = 129/168 (76%), Gaps = 3/168 (1%)
Query: 615 KFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTL 674
F TTI++VR+ KV + GDGQVT GN +MK +A+KVR+LY +VLAG AGSTADAFTL
Sbjct: 1 TFHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTL 60
Query: 675 LDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPE 734
+ FEA LE++QG+L RA+VELAK+WR D+ LR+LEAMLL A++ LIITGNGDV+EPE
Sbjct: 61 FERFEAKLEQYQGDLFRAAVELAKDWRTDKYLRKLEAMLLVADKTHILIITGNGDVIEPE 120
Query: 735 NGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY 782
+ I AIGSGG +A SAA+AL ENTEL EI +KSL IA ++ Y
Sbjct: 121 DDIIAIGSGGNYALSAARALMENTELSAREIAEKSLKIA---GDICIY 165
|
Length = 178 |
| >gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 2e-28
Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 69/262 (26%)
Query: 402 KLLNEDEIQQKAINNVE--QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEG 458
KLL Q A +VE Q GI+++DEIDKI +S + T D+S GVQ+ LL ++EG
Sbjct: 160 KLL------QAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213
Query: 459 TTVN-----------TKYGIIKTDHILFIASGAF-------------------------- 481
T + ++ + T +ILFI GAF
Sbjct: 214 TVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKK 273
Query: 482 ---------HLAKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYE 527
+P DL IPE GR P+ L+ L RI+T L KQY+
Sbjct: 274 EKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQ 333
Query: 528 ALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF---NSNNI 584
L +G+++EF D+ ++ +A+ A ER GAR L + +E++L +V F + ++
Sbjct: 334 KLFEMDGVELEFTDEALEAIAKKAI---ER--KTGARGLRSILEEILLDVMFELPSREDV 388
Query: 585 S-LLVDADYVNSRLGDLSINED 605
+++ + V + L I +
Sbjct: 389 EKVVITKEVVEGKAKPLLIYRE 410
|
Length = 412 |
| >gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-25
Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Query: 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ--EITPKNILMIGPTGVGKT 232
EI + LD+YVIGQ RAK+ +++A+ N ++R + E+ NIL+IGPTG GKT
Sbjct: 63 KEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKT 122
Query: 233 EIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
+A+ LA++ + PF +AT TE GYVG DV+ I+ L+
Sbjct: 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLL 162
|
Length = 412 |
| >gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-25
Identities = 44/100 (44%), Positives = 65/100 (65%), Gaps = 2/100 (2%)
Query: 773 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ--EITPKNILMIGPTGVGKT 830
EI + LD+YVIGQ RAK+ +++A+ N ++R + E+ NIL+IGPTG GKT
Sbjct: 63 KEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKT 122
Query: 831 EIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
+A+ LA++ + PF +AT TE GYVG DV+ I+ L+
Sbjct: 123 LLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLL 162
|
Length = 412 |
| >gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 1e-24
Identities = 61/204 (29%), Positives = 90/204 (44%), Gaps = 60/204 (29%)
Query: 1000 KLLNEDEIQQKAINNVE--QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEG 1056
KLL Q A +VE Q GI+++DEIDKI +S + T D+S GVQ+ LL ++EG
Sbjct: 160 KLL------QAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213
Query: 1057 TTVN-----------TKYGIIKTDHILFIASGAF-------------------------- 1079
T + ++ + T +ILFI GAF
Sbjct: 214 TVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKK 273
Query: 1080 ---------HLAKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYE 1125
+P DL IPE GR P+ L+ L RI+T L KQY+
Sbjct: 274 EKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQ 333
Query: 1126 ALLATEGIKIEFVDDGIQRLAEIA 1149
L +G+++EF D+ ++ +A+ A
Sbjct: 334 KLFEMDGVELEFTDEALEAIAKKA 357
|
Length = 412 |
| >gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 71/245 (28%), Positives = 114/245 (46%), Gaps = 65/245 (26%)
Query: 411 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 463
Q A +VE + GII++DEIDKI R S+N + D+S GVQ+ LL ++EGT +
Sbjct: 152 QAADYDVERAERGIIYIDEIDKIA-RKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQ 210
Query: 464 ---KYGI-----IKTDHILFIASGAF---------------------------------H 482
K+ + T +ILFI GAF
Sbjct: 211 GGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGEL 270
Query: 483 LAK--PSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 535
L + P DL IPE GR P+ L+ L +I+T L KQY+ L +G+
Sbjct: 271 LKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGV 330
Query: 536 KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF---NSNNIS-LLVDAD 591
++EF ++ ++ +A+ A I +T GAR L + +E+LL +V F + ++ +++ +
Sbjct: 331 ELEFTEEALKAIAKKA--IERKT---GARGLRSIIEELLLDVMFELPSLEDVEKVVITEE 385
Query: 592 YVNSR 596
V+
Sbjct: 386 VVDGN 390
|
Length = 408 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 3e-23
Identities = 34/155 (21%), Positives = 51/155 (32%), Gaps = 54/155 (34%)
Query: 383 TRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG------------IIFLDEIDK 430
R + + + + + ++ E+ G I+ +DEI+K
Sbjct: 31 ERALIRIDMSEYMEE----HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDEIEK 86
Query: 431 ITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI-IKTDHILFIASGAFHLAKPSD- 488
GVQ DLL ++EG T+ K G + + LFI +G F K SD
Sbjct: 87 AH-------------PGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISDA 133
Query: 489 -----------------------LIPELQGRFPIR 500
IPE GR PI
Sbjct: 134 SRLGDSPDYELLKELVMDLLKKGFIPEFLGRLPII 168
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 3e-23
Identities = 34/155 (21%), Positives = 51/155 (32%), Gaps = 54/155 (34%)
Query: 981 TRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG------------IIFLDEIDK 1028
R + + + + + ++ E+ G I+ +DEI+K
Sbjct: 31 ERALIRIDMSEYMEE----HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSIVLIDEIEK 86
Query: 1029 ITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI-IKTDHILFIASGAFHLAKPSD- 1086
GVQ DLL ++EG T+ K G + + LFI +G F K SD
Sbjct: 87 AH-------------PGVQNDLLQILEGGTLTDKQGRKVDFRNTLFIMTGNFGSEKISDA 133
Query: 1087 -----------------------LIPELQGRFPIR 1098
IPE GR PI
Sbjct: 134 SRLGDSPDYELLKELVMDLLKKGFIPEFLGRLPII 168
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-23
Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 157 QENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ-E 215
+E E + ++ + + EI + LD+YVIGQ +AK+ +++A+ N ++R E
Sbjct: 35 EELKEALDEKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVE 94
Query: 216 ITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
++ NIL+IGPTG GKT +A+ LAK+ N PF +AT TE GYVG DV+ I+ L+
Sbjct: 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLL 151
|
Length = 408 |
| >gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 7e-23
Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 755 QENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ-E 813
+E E + ++ + + EI + LD+YVIGQ +AK+ +++A+ N ++R E
Sbjct: 35 EELKEALDEKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVE 94
Query: 814 ITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
++ NIL+IGPTG GKT +A+ LAK+ N PF +AT TE GYVG DV+ I+ L+
Sbjct: 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLL 151
|
Length = 408 |
| >gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 1e-21
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+ ++ + V L D +VT G ++ ++ +K+ K+ + + AG ADA TL++
Sbjct: 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDH-IGCAFAGLAADAQTLVERL 59
Query: 81 EANLEKHQ------GNLMRASVELAKEWRNDR-TLRRLEAMLLTANRETT-----LIITG 128
+ ++ + + LA +LR L LL A + +
Sbjct: 60 RKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDP 119
Query: 129 NGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDE----IIKKSLVIA 175
+G +E AIGSG +A + L + M E + K+L A
Sbjct: 120 SGSYIEY--KATAIGSGSQYALGILEKLYKPD--MTLEEAIELALKALKSA 166
|
This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182 |
| >gnl|CDD|238887 cd01906, proteasome_protease_HslV, proteasome_protease_HslV | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 1e-21
Identities = 40/171 (23%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+ ++ + V L D +VT G ++ ++ +K+ K+ + + AG ADA TL++
Sbjct: 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDH-IGCAFAGLAADAQTLVERL 59
Query: 679 EANLEKHQ------GNLMRASVELAKEWRNDR-TLRRLEAMLLTANRETT-----LIITG 726
+ ++ + + LA +LR L LL A + +
Sbjct: 60 RKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDP 119
Query: 727 NGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDE----IIKKSLVIA 773
+G +E AIGSG +A + L + M E + K+L A
Sbjct: 120 SGSYIEY--KATAIGSGSQYALGILEKLYKPD--MTLEEAIELALKALKSA 166
|
This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleophilic threonine that is exposed by post-translational processing of an inactive propeptide. Length = 182 |
| >gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-20
Identities = 69/221 (31%), Positives = 101/221 (45%), Gaps = 57/221 (25%)
Query: 411 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEGTTVNT---- 463
Q A +VE Q GII++DEIDKI+ +S + T D+S GVQ+ LL ++EGT N
Sbjct: 171 QAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQG 230
Query: 464 -------KYGIIKTDHILFIASGAF---------------------------------HL 483
++ I T +ILFI GAF
Sbjct: 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQ 290
Query: 484 AKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 538
+P DL IPE GR P+ L+ L I+T L KQY+AL + ++++
Sbjct: 291 VEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELD 350
Query: 539 FVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579
F ++ ++ +A+ A ER GAR L + +E LL +V F
Sbjct: 351 FEEEALKAIAKKAL---ER--KTGARGLRSIVEGLLLDVMF 386
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413 |
| >gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 9e-20
Identities = 59/196 (30%), Positives = 89/196 (45%), Gaps = 56/196 (28%)
Query: 1009 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 1061
Q A +VE + GII++DEIDKI R S+N + D+S GVQ+ LL ++EGT +
Sbjct: 152 QAADYDVERAERGIIYIDEIDKI-ARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQ 210
Query: 1062 ---KYGI-----IKTDHILFIASGAF---------------------------------H 1080
K+ + T +ILFI GAF
Sbjct: 211 GGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGEL 270
Query: 1081 LAK--PSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI 1133
L + P DL IPE GR P+ L+ L +I+T L KQY+ L +G+
Sbjct: 271 LKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGV 330
Query: 1134 KIEFVDDGIQRLAEIA 1149
++EF ++ ++ +A+ A
Sbjct: 331 ELEFTEEALKAIAKKA 346
|
Length = 408 |
| >gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-19
Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ----EITPKNILMIGPTGVGK 231
EI + LD+YVIGQ +AK+ +++A+ N ++R + E++ NIL+IGPTG GK
Sbjct: 70 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGK 129
Query: 232 TEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
T +A+ LA++ N PF +AT TE GYVG DV+ I+ L+
Sbjct: 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLL 170
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413 |
| >gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-19
Identities = 44/101 (43%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ----EITPKNILMIGPTGVGK 829
EI + LD+YVIGQ +AK+ +++A+ N ++R + E++ NIL+IGPTG GK
Sbjct: 70 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGK 129
Query: 830 TEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
T +A+ LA++ N PF +AT TE GYVG DV+ I+ L+
Sbjct: 130 TLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLL 170
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413 |
| >gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-18
Identities = 58/193 (30%), Positives = 87/193 (45%), Gaps = 52/193 (26%)
Query: 1009 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT-DISRAGVQRDLLPLVEGTTVNT---- 1061
Q A +VE Q GII++DEIDKI+ +S + T D+S GVQ+ LL ++EGT N
Sbjct: 171 QAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQG 230
Query: 1062 -------KYGIIKTDHILFIASGAF---------------------------------HL 1081
++ I T +ILFI GAF
Sbjct: 231 GRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQ 290
Query: 1082 AKPSD-----LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 1136
+P D LIPE GR P+ L+ L I+T L KQY+AL + ++++
Sbjct: 291 VEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELD 350
Query: 1137 FVDDGIQRLAEIA 1149
F ++ ++ +A+ A
Sbjct: 351 FEEEALKAIAKKA 363
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413 |
| >gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 3e-18
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 18 FQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFTL 76
GTTI+ ++ + V L D + T G+ ++ K++ +K+ K+ + + AG ADA TL
Sbjct: 2 KTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDH-IGMAFAGLAADAQTL 60
Query: 77 LDFFEANLEKHQ---GNLM----------RASVELAKEWRNDRTLRRLEAMLLTANRETT 123
+D+ A + ++ G + + R + L A
Sbjct: 61 VDYARAEAQLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGGPHL 120
Query: 124 LIITGNGDVLEPENGIGAIGSGGIFAQSAAKAL 156
I +G V+E + AIGSG +A + L
Sbjct: 121 YSIDPSGSVIEYK--ATAIGSGSQYAYGFLEKL 151
|
The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188 |
| >gnl|CDD|215805 pfam00227, Proteasome, Proteasome subunit | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 3e-18
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 17/153 (11%)
Query: 616 FQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFTL 674
GTTI+ ++ + V L D + T G+ ++ K++ +K+ K+ + + AG ADA TL
Sbjct: 2 KTGTTIVGIKGKDGVVLAADKRATRGSKLLSKDTVEKIFKIDDH-IGMAFAGLAADAQTL 60
Query: 675 LDFFEANLEKHQ---GNLM----------RASVELAKEWRNDRTLRRLEAMLLTANRETT 721
+D+ A + ++ G + + R + L A
Sbjct: 61 VDYARAEAQLYRLRYGRPISVELAKRIADKLQAYTQYSGRRPYGVSLLIAGYDEDGGPHL 120
Query: 722 LIITGNGDVLEPENGIGAIGSGGIFAQSAAKAL 754
I +G V+E + AIGSG +A + L
Sbjct: 121 YSIDPSGSVIEYK--ATAIGSGSQYAYGFLEKL 151
|
The proteasome is a multisubunit structure that degrades proteins. Protein degradation is an essential component of regulation because proteins can become misfolded, damaged, or unnecessary. Proteasomes and their homologues vary greatly in complexity: from HslV (heat shock locus v), which is encoded by 1 gene in bacteria, to the eukaryotic 20S proteasome, which is encoded by more than 14 genes. Recently evidence of two novel groups of bacterial proteasomes was proposed. The first is Anbu, which is sparsely distributed among cyanobacteria and proteobacteria. The second is call beta-proteobacteria proteasome homologue (BPH). Length = 188 |
| >gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-16
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
+T ++++ V L D +++ G + + K+ K + G+AG ADA TL+
Sbjct: 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDG-IAWGLAGLAADAQTLVRRL 59
Query: 81 EANLEKHQGNLMR------ASVELAKEWRNDRTLRRLEAMLLTANRETT----LIITGNG 130
L+ ++ + ELAK + R L+ A + I +G
Sbjct: 60 REALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSG 119
Query: 131 DVLEPENGIGAIGSGGIFAQSAAKALQEN 159
V+E + A GS A+S + L +
Sbjct: 120 PVIENPGAV-ATGSRSQRAKSLLEKLYKP 147
|
N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164 |
| >gnl|CDD|238884 cd01901, Ntn_hydrolase, The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 4e-16
Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
+T ++++ V L D +++ G + + K+ K + G+AG ADA TL+
Sbjct: 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDG-IAWGLAGLAADAQTLVRRL 59
Query: 679 EANLEKHQGNLMR------ASVELAKEWRNDRTLRRLEAMLLTANRETT----LIITGNG 728
L+ ++ + ELAK + R L+ A + I +G
Sbjct: 60 REALQLYRLRYGEPISVVALAKELAKLLQVYTQGRPFGVNLIVAGVDEGGGNLYYIDPSG 119
Query: 729 DVLEPENGIGAIGSGGIFAQSAAKALQEN 757
V+E + A GS A+S + L +
Sbjct: 120 PVIENPGAV-ATGSRSQRAKSLLEKLYKP 147
|
N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either the nucleophilic hydroxyl in a Ser or Thr residue or the nucleophilic thiol in a Cys residue. The position of the N-terminal nucleophile in the active site and the mechanism of catalysis are conserved in this family, despite considerable variation in the protein sequences. Length = 164 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 186 IGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS--- 242
+GQ A A+ AL PKN+L+ GP G GKT +AR +A
Sbjct: 1 VGQEEAIEALREALELP--------------PPKNLLLYGPPGTGKTTLARAIANELFRP 46
Query: 243 NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREF-----EINKVRTRAEDAAED 297
APF+ + A+ E V + L+ ++ + EI+ + A++A
Sbjct: 47 GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALL- 105
Query: 298 RVIDILVPS 306
RV++ L
Sbjct: 106 RVLETLNDL 114
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 23/129 (17%)
Query: 784 IGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS--- 840
+GQ A A+ AL PKN+L+ GP G GKT +AR +A
Sbjct: 1 VGQEEAIEALREALELP--------------PPKNLLLYGPPGTGKTTLARAIANELFRP 46
Query: 841 NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREF-----EINKVRTRAEDAAED 895
APF+ + A+ E V + L+ ++ + EI+ + A++A
Sbjct: 47 GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALL- 105
Query: 896 RVIDILVPS 904
RV++ L
Sbjct: 106 RVLETLNDL 114
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 24/125 (19%)
Query: 160 TELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK 219
+ P E + + L +I SEL+K V+G +AL
Sbjct: 3 EIMAPLERVAEIL--GKIRSELEKVVVGDEEVIELALLALLAG----------------G 44
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQT 279
++L+ GP GVGKT +AR LA+ PF++I+ T D + + +
Sbjct: 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPS------DLLGTYAYAALLLEP 98
Query: 280 REFEI 284
EF
Sbjct: 99 GEFRF 103
|
Length = 329 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 24/125 (19%)
Query: 758 TELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK 817
+ P E + + L +I SEL+K V+G +AL
Sbjct: 3 EIMAPLERVAEIL--GKIRSELEKVVVGDEEVIELALLALLAG----------------G 44
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQT 877
++L+ GP GVGKT +AR LA+ PF++I+ T D + + +
Sbjct: 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPS------DLLGTYAYAALLLEP 98
Query: 878 REFEI 882
EF
Sbjct: 99 GEFRF 103
|
Length = 329 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNA---PFIKIEATKFTE 256
+ L +GPTGVGKTE+A+ LA+L I+I+ +++ E
Sbjct: 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYME 44
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNA---PFIKIEATKFTE 854
+ L +GPTGVGKTE+A+ LA+L I+I+ +++ E
Sbjct: 5 SFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYME 44
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-06
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 185 VIGQNRAKRAVAIALR-----NRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
VIGQ AKR + + R+ + PKN+L GP G GKT +A+ LA
Sbjct: 123 VIGQEEAKRKCRLIMEYLENPERFG----------DWAPKNVLFYGPPGTGKTMMAKALA 172
Query: 240 KLSNAPFIKIEATKFTEVG-YVGRDVDTIIRDLID 273
+ P + ++AT+ +G +VG D I +L +
Sbjct: 173 NEAKVPLLLVKATEL--IGEHVG-DGARRIHELYE 204
|
Length = 368 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-06
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 783 VIGQNRAKRAVAIALR-----NRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
VIGQ AKR + + R+ + PKN+L GP G GKT +A+ LA
Sbjct: 123 VIGQEEAKRKCRLIMEYLENPERFG----------DWAPKNVLFYGPPGTGKTMMAKALA 172
Query: 838 KLSNAPFIKIEATKFTEVG-YVGRDVDTIIRDLID 871
+ P + ++AT+ +G +VG D I +L +
Sbjct: 173 NEAKVPLLLVKATEL--IGEHVG-DGARRIHELYE 204
|
Length = 368 |
| >gnl|CDD|198154 smart01086, ClpB_D2-small, C-terminal, D2-small domain, of ClpB protein | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-05
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 506 LSISDFTRIMTSTNVCLTKQYEAL---LATEGIKIEFVDDGIQRLAEIAYCINERTENIG 562
L D RI + AL LA +GI +EF D+ + LAE Y G
Sbjct: 1 LDKEDLVRI-------VDLPLNALQKRLAEKGITLEFTDEALDWLAEKGY-----DPKYG 48
Query: 563 ARRLYTAMEKLLEEVSFN 580
AR L +++ LE+
Sbjct: 49 ARPLRRIIQRELEDPLAE 66
|
This is the C-terminal domain of ClpB protein, referred to as the D2-small domain, and is a mixed alpha-beta structure. Compared with the D1-small domain (included in AAA) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit and thereby providing enough binding energy to stabilise the functional assembly. The domain is associated with two Clp_N at the N-terminus as well as AAA and AAA_2. Length = 90 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 221 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTR 280
+L+ GP G GKT +A+ +AK APFI+I ++ YVG + + +R+L + + K
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSK-YVG-ESEKRLRELFEAAKKLAP 58
Query: 281 ------EFE-INKVRTRAEDAAEDRVIDILVP 305
E + + R D+ RV++ L+
Sbjct: 59 CVIFIDEIDALAGSRGSGGDSESRRVVNQLLT 90
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTR 878
+L+ GP G GKT +A+ +AK APFI+I ++ YVG + + +R+L + + K
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSK-YVG-ESEKRLRELFEAAKKLAP 58
Query: 879 ------EFE-INKVRTRAEDAAEDRVIDILVP 903
E + + R D+ RV++ L+
Sbjct: 59 CVIFIDEIDALAGSRGSGGDSESRRVVNQLLT 90
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)
Query: 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRL 238
V GQ +AKRA+ IA N+LMIGP G GKT +A+RL
Sbjct: 5 VKGQEQAKRALEIAAAGG----------------HNLLMIGPPGSGKTMLAKRL 42
|
Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 |
| >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 5e-05
Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 16/54 (29%)
Query: 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRL 836
V GQ +AKRA+ IA N+LMIGP G GKT +A+RL
Sbjct: 5 VKGQEQAKRALEIAAAGG----------------HNLLMIGPPGSGKTMLAKRL 42
|
Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 221 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD--------VDTIIRDLI 272
IL+ GP G GK+ +A++LA+ P I ++ E D ++ +++
Sbjct: 2 ILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEIL 61
Query: 273 DISIKQTREFEINKVRTRAEDAAE-DRVIDILVP 305
D KQ + + T E D V+ + +P
Sbjct: 62 DELAKQEWVIDGVRESTLELRLEEADLVVFLDLP 95
|
Length = 114 |
| >gnl|CDD|221983 pfam13207, AAA_17, AAA domain | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 1e-04
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD--------VDTIIRDLI 870
IL+ GP G GK+ +A++LA+ P I ++ E D ++ +++
Sbjct: 2 ILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDDGELDDIDIDLELLEEIL 61
Query: 871 DISIKQTREFEINKVRTRAEDAAE-DRVIDILVP 903
D KQ + + T E D V+ + +P
Sbjct: 62 DELAKQEWVIDGVRESTLELRLEEADLVVFLDLP 95
|
Length = 114 |
| >gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 609 YDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGST 668
Y K GTT + ++ + V L D + T G +I ++ +K+ K+ + + IAG
Sbjct: 21 YALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDH-IGMAIAGLA 79
Query: 669 ADAFTLLDFFEANLEKHQ 686
ADA L+ + A + ++
Sbjct: 80 ADAQVLVRYARAEAQLYR 97
|
Length = 236 |
| >gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239
EL VIGQN A AV+ A+R R ++ P + I + L +GPTGVGKTE+ + LA
Sbjct: 565 ELHHRVIGQNEAVEAVSNAIRRS--RAGLSDP-NRPI--GSFLFLGPTGVGKTELCKALA 619
Query: 240 KL---SNAPFIKIEATKFTEVGYVGRDV 264
S+ ++I+ ++F E V R V
Sbjct: 620 NFMFDSDDAMVRIDMSEFMEKHSVSRLV 647
|
Length = 857 |
| >gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 778 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 837
EL VIGQN A AV+ A+R R ++ P + I + L +GPTGVGKTE+ + LA
Sbjct: 565 ELHHRVIGQNEAVEAVSNAIRRS--RAGLSDP-NRPI--GSFLFLGPTGVGKTELCKALA 619
Query: 838 KL---SNAPFIKIEATKFTEVGYVGRDV 862
S+ ++I+ ++F E V R V
Sbjct: 620 NFMFDSDDAMVRIDMSEFMEKHSVSRLV 647
|
Length = 857 |
| >gnl|CDD|223711 COG0638, PRE1, 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTT + ++ + V L D + T G +I ++ +K+ K+ + + IAG ADA L+ +
Sbjct: 30 GTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDH-IGMAIAGLAADAQVLVRY 88
Query: 80 FEANLEKHQ 88
A + ++
Sbjct: 89 ARAEAQLYR 97
|
Length = 236 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 185 VIGQNRAKRAVAIA---LRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 241
V G + AK VA LR R Q++ G + PK +LM+GP G GKT +A+ +A
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208
Query: 242 SNAPFIKIEATKFTEVGYVG 261
+ PF I + F E+ +VG
Sbjct: 209 AKVPFFTISGSDFVEM-FVG 227
|
Length = 644 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 3e-04
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 783 VIGQNRAKRAVAIA---LRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 839
V G + AK VA LR R Q++ G + PK +LM+GP G GKT +A+ +A
Sbjct: 154 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 208
Query: 840 SNAPFIKIEATKFTEVGYVG 859
+ PF I + F E+ +VG
Sbjct: 209 AKVPFFTISGSDFVEM-FVG 227
|
Length = 644 |
| >gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARRL 238
L + GQ+ A + A+ ++ L P + L +GPTGVGKTE+A++L
Sbjct: 450 NLKAKIFGQDEAIDQLVSAI------KRSRAGLGDPNKPVGSFLFVGPTGVGKTELAKQL 503
Query: 239 AKLSNAPFIKIEATKFTE-----------VGYVGRD 263
A+ ++ + +++ E GYVG +
Sbjct: 504 AEELGVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFE 539
|
[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730 |
| >gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-04
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 778 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARRL 836
L + GQ+ A + A+ ++ L P + L +GPTGVGKTE+A++L
Sbjct: 450 NLKAKIFGQDEAIDQLVSAI------KRSRAGLGDPNKPVGSFLFVGPTGVGKTELAKQL 503
Query: 837 AKLSNAPFIKIEATKFTE-----------VGYVGRD 861
A+ ++ + +++ E GYVG +
Sbjct: 504 AEELGVHLLRFDMSEYMEKHTVSRLIGSPPGYVGFE 539
|
[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730 |
| >gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 17/77 (22%)
Query: 166 EIIKKSLVIAEIVSELD-KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMI 224
I S VI D K V GQ +AKRA+ IA G N+L++
Sbjct: 161 PIPIPSEVIESFSLAPDFKDVKGQEQAKRALEIA---------AAGG-------HNLLLV 204
Query: 225 GPTGVGKTEIARRLAKL 241
GP G GKT +A RL L
Sbjct: 205 GPPGTGKTMLASRLPGL 221
|
Length = 490 |
| >gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-04
Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 17/77 (22%)
Query: 764 EIIKKSLVIAEIVSELD-KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMI 822
I S VI D K V GQ +AKRA+ IA G N+L++
Sbjct: 161 PIPIPSEVIESFSLAPDFKDVKGQEQAKRALEIA---------AAGG-------HNLLLV 204
Query: 823 GPTGVGKTEIARRLAKL 839
GP G GKT +A RL L
Sbjct: 205 GPPGTGKTMLASRLPGL 221
|
Length = 490 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAF 481
+IF+DEID + +++ R V LL ++G T + ++ IA+
Sbjct: 60 VIFIDEIDALAGSRGSGGDSESRR--VVNQLLTELDGFTSS-------LSKVIVIAAT-- 108
Query: 482 HLAKPSDLIPEL-QGRFPIRVELD 504
+P L P L +GRF +E
Sbjct: 109 --NRPDKLDPALLRGRFDRIIEFP 130
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAF 1079
+IF+DEID + +++ R V LL ++G T + ++ IA+
Sbjct: 60 VIFIDEIDALAGSRGSGGDSESRR--VVNQLLTELDGFTSS-------LSKVIVIAAT-- 108
Query: 1080 HLAKPSDLIPEL-QGRFPIRVELD 1102
+P L P L +GRF +E
Sbjct: 109 --NRPDKLDPALLRGRFDRIIEFP 130
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 21/99 (21%)
Query: 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITP-KNILMIGPTGVGKTEIARRL 238
L + V+GQ+ A AV+ A+R R R L P + L +GPTGVGKTE+A+ L
Sbjct: 562 VLHERVVGQDEAVEAVSDAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELAKAL 615
Query: 239 AKL---SNAPFIKIEATKFTEV-----------GYVGRD 263
A+ ++I+ +++ E GYVG +
Sbjct: 616 AEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYE 654
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852 |
| >gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 21/99 (21%)
Query: 778 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITP-KNILMIGPTGVGKTEIARRL 836
L + V+GQ+ A AV+ A+R R R L P + L +GPTGVGKTE+A+ L
Sbjct: 562 VLHERVVGQDEAVEAVSDAIR-RSR-----AGLSDPNRPIGSFLFLGPTGVGKTELAKAL 615
Query: 837 AKL---SNAPFIKIEATKFTEV-----------GYVGRD 861
A+ ++I+ +++ E GYVG +
Sbjct: 616 AEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYE 654
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins [Protein fate, Protein folding and stabilization]. Length = 852 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 220 NILMIGPTGVGKTEIARRLAK-LSNAPFIKIEATKFTE 256
+L++GP G GK+E+A RLA LSN P ++ T+ T
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTT 38
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 818 NILMIGPTGVGKTEIARRLAK-LSNAPFIKIEATKFTE 854
+L++GP G GK+E+A RLA LSN P ++ T+ T
Sbjct: 1 GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTT 38
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 169 KKSLVIAEIVSELDKYVIGQNRAKRAVAI---ALRNRWRRQQITGPLQQEITPKNILMIG 225
+K+ ++AE +EL + IG R KR VA + R + P+ Q T ++L G
Sbjct: 263 RKAKLLAEAEAELAEQ-IGLERVKRQVAALKSSTAMALARAERGLPVAQ--TSNHMLFAG 319
Query: 226 PTGVGKTEIARRLAKL 241
P G GKT IAR +AK+
Sbjct: 320 PPGTGKTTIARVVAKI 335
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 767 KKSLVIAEIVSELDKYVIGQNRAKRAVAI---ALRNRWRRQQITGPLQQEITPKNILMIG 823
+K+ ++AE +EL + IG R KR VA + R + P+ Q T ++L G
Sbjct: 263 RKAKLLAEAEAELAEQ-IGLERVKRQVAALKSSTAMALARAERGLPVAQ--TSNHMLFAG 319
Query: 824 PTGVGKTEIARRLAKL 839
P G GKT IAR +AK+
Sbjct: 320 PPGTGKTTIARVVAKI 335
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 59/226 (26%), Positives = 87/226 (38%), Gaps = 56/226 (24%)
Query: 73 AFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDV 132
A LLD + + L A+ EL KE R L+ + + + ET +
Sbjct: 390 AIDLLDEAGSRVRLINSRLPPAARELDKELR--EILKDKDEAIREQDFETA------KQL 441
Query: 133 LEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVS------------- 179
+ E + A I A +K +E L + ++ IAEIVS
Sbjct: 442 RDREMEVRA----QIAAIIQSKKTEEEKRLEVPVVTEED--IAEIVSAWTGIPVNKLTKS 495
Query: 180 ----------ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 229
L K +IGQ+ A AV+ A+R R R G + L GPTGV
Sbjct: 496 ESEKLLHMEETLHKRIIGQDEAVVAVSKAIR-RAR----VGLKNPNRPIASFLFSGPTGV 550
Query: 230 GKTEIARRLAKL---SNAPFIKIEATKFTE-----------VGYVG 261
GKTE+ + LA S I+++ +++ E GYVG
Sbjct: 551 GKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVG 596
|
Length = 821 |
| >gnl|CDD|214361 CHL00095, clpC, Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-04
Identities = 59/226 (26%), Positives = 87/226 (38%), Gaps = 56/226 (24%)
Query: 671 AFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDV 730
A LLD + + L A+ EL KE R L+ + + + ET +
Sbjct: 390 AIDLLDEAGSRVRLINSRLPPAARELDKELR--EILKDKDEAIREQDFETA------KQL 441
Query: 731 LEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVS------------- 777
+ E + A I A +K +E L + ++ IAEIVS
Sbjct: 442 RDREMEVRA----QIAAIIQSKKTEEEKRLEVPVVTEED--IAEIVSAWTGIPVNKLTKS 495
Query: 778 ----------ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 827
L K +IGQ+ A AV+ A+R R R G + L GPTGV
Sbjct: 496 ESEKLLHMEETLHKRIIGQDEAVVAVSKAIR-RAR----VGLKNPNRPIASFLFSGPTGV 550
Query: 828 GKTEIARRLAKL---SNAPFIKIEATKFTE-----------VGYVG 859
GKTE+ + LA S I+++ +++ E GYVG
Sbjct: 551 GKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVG 596
|
Length = 821 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 9e-04
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 396 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL 455
A + + + G++F+DEID + G Q LL +
Sbjct: 61 GLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL-------------SRGAQNALLRV 107
Query: 456 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDS 505
+E I +++ I + L DL L R IR+ +
Sbjct: 108 LET----LNDLRIDRENVRVIGATNRPL--LGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 9e-04
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 994 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL 1053
A + + + G++F+DEID + G Q LL +
Sbjct: 61 GLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL-------------SRGAQNALLRV 107
Query: 1054 VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDS 1103
+E I +++ I + L DL L R IR+ +
Sbjct: 108 LET----LNDLRIDRENVRVIGATNRPL--LGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 216 ITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 275
+ NI++IG G GK+ I R LAK FI D D +I S
Sbjct: 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI---------------DTDHLIEARAGKS 46
Query: 276 I 276
I
Sbjct: 47 I 47
|
Length = 175 |
| >gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 15/61 (24%)
Query: 814 ITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS 873
+ NI++IG G GK+ I R LAK FI D D +I S
Sbjct: 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI---------------DTDHLIEARAGKS 46
Query: 874 I 874
I
Sbjct: 47 I 47
|
Length = 175 |
| >gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFI 247
NI++IG G GKT + R LAK PF+
Sbjct: 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. Length = 154 |
| >gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845
NI++IG G GKT + R LAK PF+
Sbjct: 1 NIVLIGMMGAGKTTVGRLLAKALGLPFV 28
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. Length = 154 |
| >gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 179 SELDKYVIGQNRAKRAVAIAL-RNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARR 237
L K VIGQ+ A AV+ A+ R R P+ + L +GPTGVGKTE+A+
Sbjct: 487 RRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIG------SFLFLGPTGVGKTELAKA 540
Query: 238 LAK 240
LA+
Sbjct: 541 LAE 543
|
Length = 786 |
| >gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 777 SELDKYVIGQNRAKRAVAIAL-RNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARR 835
L K VIGQ+ A AV+ A+ R R P+ + L +GPTGVGKTE+A+
Sbjct: 487 RRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIG------SFLFLGPTGVGKTELAKA 540
Query: 836 LAK 838
LA+
Sbjct: 541 LAE 543
|
Length = 786 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +L++GP G GKT +A+ +A + PF I + F E+ +VG
Sbjct: 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 130
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +L++GP G GKT +A+ +A + PF I + F E+ +VG
Sbjct: 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVG 130
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|215758 pfam00158, Sigma54_activat, Sigma-54 interaction domain | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.003
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKI 249
T +L+ G +G GK AR + +LS + PF+ +
Sbjct: 21 TDATVLITGESGTGKELFARAIHQLSPRADGPFVAV 56
|
Length = 168 |
| >gnl|CDD|215758 pfam00158, Sigma54_activat, Sigma-54 interaction domain | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.003
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKI 847
T +L+ G +G GK AR + +LS + PF+ +
Sbjct: 21 TDATVLITGESGTGKELFARAIHQLSPRADGPFVAV 56
|
Length = 168 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 223 MI--GPTGVGKTEIARRLAKLSNAPFIKIEATKFT 255
MI GP G GKT +AR +A +NA F + A
Sbjct: 51 MILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG 85
|
Length = 436 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.004
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 821 MI--GPTGVGKTEIARRLAKLSNAPFIKIEATKFT 853
MI GP G GKT +AR +A +NA F + A
Sbjct: 51 MILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG 85
|
Length = 436 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.004
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKLSNAP---FIKIEATKFTEVGYVGRDVDTIIRDLID 273
+ IL++GP G GKT +AR LA+ P I I+ E + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 274 ISIKQTREFEINKVR 288
S + + R
Sbjct: 61 GSGELRLRLALALAR 75
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.004
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKLSNAP---FIKIEATKFTEVGYVGRDVDTIIRDLID 871
+ IL++GP G GKT +AR LA+ P I I+ E + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 872 ISIKQTREFEINKVR 886
S + + R
Sbjct: 61 GSGELRLRLALALAR 75
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1165 | |||
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 100.0 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 100.0 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 100.0 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 100.0 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 100.0 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 100.0 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 100.0 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 100.0 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 100.0 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 100.0 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 100.0 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 100.0 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 100.0 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 100.0 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 100.0 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 100.0 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 100.0 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 100.0 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 100.0 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 100.0 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 100.0 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 100.0 | |
| KOG0733|consensus | 802 | 100.0 | ||
| KOG0745|consensus | 564 | 100.0 | ||
| KOG1051|consensus | 898 | 100.0 | ||
| KOG0745|consensus | 564 | 100.0 | ||
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 100.0 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 100.0 | |
| KOG0730|consensus | 693 | 100.0 | ||
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 100.0 | |
| KOG1051|consensus | 898 | 100.0 | ||
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| KOG0736|consensus | 953 | 99.94 | ||
| KOG0735|consensus | 952 | 99.93 | ||
| KOG0730|consensus | 693 | 99.92 | ||
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 99.91 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.91 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.91 | |
| KOG0733|consensus | 802 | 99.9 | ||
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 99.9 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.87 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.86 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.86 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.85 | |
| KOG0741|consensus | 744 | 99.85 | ||
| KOG2028|consensus | 554 | 99.85 | ||
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.85 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.84 | |
| KOG0738|consensus | 491 | 99.84 | ||
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 99.84 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.84 | |
| KOG0736|consensus | 953 | 99.84 | ||
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.83 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.82 | |
| KOG0739|consensus | 439 | 99.82 | ||
| KOG0738|consensus | 491 | 99.81 | ||
| KOG2004|consensus | 906 | 99.81 | ||
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.8 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.8 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 99.8 | |
| KOG0739|consensus | 439 | 99.79 | ||
| KOG2028|consensus | 554 | 99.79 | ||
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.78 | |
| KOG0728|consensus | 404 | 99.78 | ||
| KOG0727|consensus | 408 | 99.78 | ||
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.77 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.76 | |
| KOG0735|consensus | 952 | 99.76 | ||
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.76 | |
| KOG0727|consensus | 408 | 99.75 | ||
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.75 | |
| KOG0728|consensus | 404 | 99.74 | ||
| KOG0731|consensus | 774 | 99.74 | ||
| KOG0731|consensus | 774 | 99.74 | ||
| KOG0734|consensus | 752 | 99.73 | ||
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.73 | |
| KOG2004|consensus | 906 | 99.73 | ||
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.72 | |
| KOG0737|consensus | 386 | 99.72 | ||
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.7 | |
| KOG0734|consensus | 752 | 99.7 | ||
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.7 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 99.69 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.69 | |
| KOG0737|consensus | 386 | 99.68 | ||
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 99.68 | |
| KOG0740|consensus | 428 | 99.67 | ||
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.67 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.66 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.66 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.66 | |
| KOG0652|consensus | 424 | 99.66 | ||
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.66 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.66 | |
| KOG0652|consensus | 424 | 99.66 | ||
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.66 | |
| KOG0726|consensus | 440 | 99.65 | ||
| KOG0726|consensus | 440 | 99.65 | ||
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.64 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.64 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.63 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.63 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 99.63 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.63 | |
| KOG0729|consensus | 435 | 99.62 | ||
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.61 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.61 | |
| KOG0651|consensus | 388 | 99.61 | ||
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.61 | |
| KOG0740|consensus | 428 | 99.61 | ||
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.6 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.6 | |
| KOG0729|consensus | 435 | 99.6 | ||
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.6 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.6 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.59 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.59 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 99.59 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.59 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.58 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.58 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.56 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.56 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.56 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.56 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.55 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.55 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.55 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.55 | |
| KOG0989|consensus | 346 | 99.55 | ||
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.54 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.54 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.54 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.53 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.52 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.52 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.52 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.52 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.51 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.51 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.51 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.51 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.5 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.5 | |
| KOG0651|consensus | 388 | 99.5 | ||
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.49 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.49 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.49 | |
| KOG0989|consensus | 346 | 99.48 | ||
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.48 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.48 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.46 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.46 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.45 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.45 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.44 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.44 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.44 | |
| KOG0741|consensus | 744 | 99.44 | ||
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.43 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.43 | |
| KOG0991|consensus | 333 | 99.43 | ||
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.43 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.43 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.43 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.42 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.42 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.42 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.41 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.41 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.41 | |
| KOG0732|consensus | 1080 | 99.41 | ||
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.4 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.4 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.4 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.39 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.39 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.38 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.38 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.37 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.37 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.37 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.37 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.37 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.37 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.36 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.35 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.35 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.34 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.34 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.34 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.34 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.33 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.33 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.33 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.33 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.32 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.32 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.32 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.32 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.31 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.31 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.3 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.29 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.29 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.28 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.28 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.27 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.26 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.26 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.24 | |
| KOG0991|consensus | 333 | 99.23 | ||
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.23 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.22 | |
| KOG0744|consensus | 423 | 99.21 | ||
| KOG0732|consensus | 1080 | 99.2 | ||
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.2 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.19 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.18 | |
| COG5405 | 178 | HslV ATP-dependent protease HslVU (ClpYQ), peptida | 99.17 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.16 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.12 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.1 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.1 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.1 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.1 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.1 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.09 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.09 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.08 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.08 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.07 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.06 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.06 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.06 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.06 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.05 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.05 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.04 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.04 | |
| COG5405 | 178 | HslV ATP-dependent protease HslVU (ClpYQ), peptida | 99.04 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.03 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.03 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.03 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.03 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.01 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.0 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.0 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.0 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.0 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 98.99 | |
| KOG0744|consensus | 423 | 98.99 | ||
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 98.99 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 98.99 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 98.98 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 98.98 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 98.97 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 98.97 | |
| KOG0742|consensus | 630 | 98.96 | ||
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 98.96 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 98.96 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 98.95 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 98.95 | |
| PHA02244 | 383 | ATPase-like protein | 98.94 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 98.94 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 98.94 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.93 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 98.93 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 98.93 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 98.92 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 98.92 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 98.92 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 98.92 | |
| KOG1942|consensus | 456 | 98.92 | ||
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 98.91 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 98.91 | |
| KOG0742|consensus | 630 | 98.9 | ||
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 98.9 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 98.9 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 98.9 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 98.9 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 98.89 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 98.88 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.88 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 98.88 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 98.87 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 98.87 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 98.86 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 98.86 | |
| PRK06620 | 214 | hypothetical protein; Validated | 98.86 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 98.86 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 98.85 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 98.85 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 98.85 | |
| KOG1942|consensus | 456 | 98.84 | ||
| PRK08727 | 233 | hypothetical protein; Validated | 98.83 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.82 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 98.82 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 98.81 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 98.81 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.81 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 98.81 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 98.81 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 98.8 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.8 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.79 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 98.78 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 98.78 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 98.78 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.77 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 98.77 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 98.77 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.76 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.75 | |
| KOG0990|consensus | 360 | 98.75 | ||
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 98.75 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 98.75 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 98.74 | |
| PHA02244 | 383 | ATPase-like protein | 98.74 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.72 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 98.72 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 98.71 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.7 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 98.7 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 98.69 | |
| KOG0743|consensus | 457 | 98.69 | ||
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.69 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 98.68 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 98.68 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 98.67 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 98.66 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.65 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 98.64 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.63 | |
| PRK09087 | 226 | hypothetical protein; Validated | 98.63 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.61 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.61 | |
| PRK06620 | 214 | hypothetical protein; Validated | 98.6 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 98.59 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.59 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 98.59 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.58 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 98.58 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 98.58 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.58 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 98.57 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.56 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 98.55 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 98.54 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.54 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.53 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 98.52 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 98.52 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.49 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.48 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 98.48 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.48 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 98.47 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.46 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 98.46 | |
| KOG1969|consensus | 877 | 98.45 | ||
| PRK09087 | 226 | hypothetical protein; Validated | 98.45 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.45 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 98.44 | |
| KOG2035|consensus | 351 | 98.44 | ||
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.43 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.41 | |
| KOG2170|consensus | 344 | 98.41 | ||
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 98.41 | |
| KOG0990|consensus | 360 | 98.4 | ||
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 98.4 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 98.4 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 98.4 | |
| KOG0743|consensus | 457 | 98.4 | ||
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.39 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 98.38 | |
| KOG2035|consensus | 351 | 98.38 | ||
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.37 | |
| KOG1969|consensus | 877 | 98.37 | ||
| PRK15115 | 444 | response regulator GlrR; Provisional | 98.35 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.34 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.34 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 98.33 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.33 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 98.32 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 98.3 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 98.27 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 98.26 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.25 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.24 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.23 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 98.21 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.2 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 98.18 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.17 | |
| PF10431 | 81 | ClpB_D2-small: C-terminal, D2-small domain, of Clp | 98.12 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 98.11 | |
| KOG2680|consensus | 454 | 98.1 | ||
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 98.09 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.08 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.08 | |
| KOG2227|consensus | 529 | 98.07 | ||
| KOG2680|consensus | 454 | 98.06 | ||
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.05 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.03 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 98.0 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.0 | |
| KOG1514|consensus | 767 | 97.98 | ||
| PF13173 | 128 | AAA_14: AAA domain | 97.97 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 97.95 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 97.93 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 97.93 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 97.92 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 97.92 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 97.89 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 97.89 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 97.87 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 97.85 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 97.79 | |
| PF13173 | 128 | AAA_14: AAA domain | 97.77 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 97.72 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 97.71 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 97.68 | |
| KOG2170|consensus | 344 | 97.68 | ||
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 97.66 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.66 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.62 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 97.61 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.6 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 97.57 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 97.55 | |
| PRK12377 | 248 | putative replication protein; Provisional | 97.54 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 97.53 | |
| KOG0480|consensus | 764 | 97.51 | ||
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 97.49 | |
| KOG2227|consensus | 529 | 97.49 | ||
| KOG0478|consensus | 804 | 97.45 | ||
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.43 | |
| PRK12377 | 248 | putative replication protein; Provisional | 97.43 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.4 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 97.39 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 97.38 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 97.37 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 97.34 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.31 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 97.26 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.25 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.22 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.22 | |
| PRK08181 | 269 | transposase; Validated | 97.22 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 97.21 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.21 | |
| KOG1514|consensus | 767 | 97.18 | ||
| KOG0478|consensus | 804 | 97.17 | ||
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 97.17 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.09 | |
| PRK08116 | 268 | hypothetical protein; Validated | 97.09 | |
| PRK06526 | 254 | transposase; Provisional | 97.08 | |
| PF10923 | 416 | DUF2791: P-loop Domain of unknown function (DUF279 | 97.06 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 97.04 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 97.02 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 96.99 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 96.99 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 96.98 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 96.98 | |
| PF10923 | 416 | DUF2791: P-loop Domain of unknown function (DUF279 | 96.96 | |
| KOG0480|consensus | 764 | 96.95 | ||
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 96.93 | |
| KOG1970|consensus | 634 | 96.92 | ||
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 96.88 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 96.86 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 96.85 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 96.79 | |
| PRK03839 | 180 | putative kinase; Provisional | 96.78 | |
| PRK03839 | 180 | putative kinase; Provisional | 96.78 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 96.77 | |
| COG0529 | 197 | CysC Adenylylsulfate kinase and related kinases [I | 96.77 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 96.76 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 96.73 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 96.72 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 96.7 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 96.65 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 96.6 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 96.58 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 96.58 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 96.57 |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-94 Score=778.53 Aligned_cols=436 Identities=64% Similarity=1.012 Sum_probs=418.2
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.++...|+++|+||++||+.++.|++++|||..+...++....|+++|+.||||+|||++||.||+..+.||+.+.
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCC-cCcchhhHHHH
Q psy2392 251 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNN-ENNNISTRQIF 329 (1165)
Q Consensus 251 ~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~ 329 (1165)
++.|++.||||.+.++++++|++.++...++...++++..+++.|+++++|.|+|+.++ .-++.+ +.+.+.+++.|
T Consensus 83 ATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~---~~g~~~~~~~~~~~r~~~ 159 (444)
T COG1220 83 ATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKN---FWGQSENKQESSATREKF 159 (444)
T ss_pred eeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---ccCcCcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997532 112222 23568899999
Q ss_pred HHHhhcCCCCCcEEEEEecCC-CCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhH
Q psy2392 330 RKRLREGALDNKEIEIELNDT-GPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 408 (1165)
Q Consensus 330 ~~~~~~g~l~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1165)
|+.|++|.|||++|+|++... .+.++++++|||++|+.++..||++++++|++.|+++||+|+++|.++||++++|.++
T Consensus 160 rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~ 239 (444)
T COG1220 160 RKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEE 239 (444)
T ss_pred HHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHH
Confidence 999999999999999999885 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC
Q psy2392 409 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD 488 (1165)
Q Consensus 409 ~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~ 488 (1165)
+..+|+..+++.|||||||||||+.+... +++|+|++||||+|||++||++|+||||+|+|+|||||||||||.++|||
T Consensus 240 i~~eAi~~aE~~GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD 318 (444)
T COG1220 240 IKQEAIDAAEQNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD 318 (444)
T ss_pred HHHHHHHHHHhcCeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh
Confidence 99999999999999999999999998763 44599999999999999999999999999999999999999999999999
Q ss_pred CchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 489 LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 489 l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
|+||||||||++|+|++|+.+||++||++|++.|++||++||+++|+.|.|+++|++.||++|+++|...+|+|||||||
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhT 398 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHT 398 (444)
T ss_pred cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 569 AMEKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 569 ~ie~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
++|++|+++||++|+.. ++||.+||++.+++++.+.||||||
T Consensus 399 vlErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~~n~DLsryI 443 (444)
T COG1220 399 VLERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLVANEDLSRFI 443 (444)
T ss_pred HHHHHHHHhCccCCcCCCCeEEEcHHHHHHHHHHHhcccchhhhh
Confidence 99999999999999986 9999999999999999999999997
|
|
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-91 Score=760.25 Aligned_cols=390 Identities=64% Similarity=1.009 Sum_probs=371.9
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++...|+++|+||++||+.+..+++++|+|..+...++....|+|+|++||+|+|||++||.||+..+.||+.+.
T Consensus 3 ~~tPreIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 3 EMTPREIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred CCCHHHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 57899999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCc-ccchhhHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE-NNNISTRQIF 927 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~-~~~~~~r~~~ 927 (1165)
++.|++.||||.+.++++|+|++.+++.+++.....++....+.|+.|+++.|++...+ ..++.++ .+...+|+.|
T Consensus 83 ATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~---~~g~~~~~~~~~~~r~~~ 159 (444)
T COG1220 83 ATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKN---FWGQSENKQESSATREKF 159 (444)
T ss_pred eeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc---ccCcCcccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997321 0111121 2467899999
Q ss_pred HHhhccCCCCCeEEEEEecCC-CCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHH
Q psy2392 928 RKRLREGALDNKEIEIELNDT-GPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 1006 (1165)
Q Consensus 928 ~~~l~~g~ld~r~v~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~ 1006 (1165)
|+.||+|.|||+.|+|++.+. .+.++|++||||++|..+|.+||+.++++|+|.|++|||+|+++|.++|++|++|++.
T Consensus 160 rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~ 239 (444)
T COG1220 160 RKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEE 239 (444)
T ss_pred HHHHHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHH
Confidence 999999999999999999996 7889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC
Q psy2392 1007 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD 1086 (1165)
Q Consensus 1007 ~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d 1086 (1165)
+.++|+..++++|||||||||||++++++ +++|+|+|||||||||++||++|+||||+++|+|||||||||||.+||||
T Consensus 240 i~~eAi~~aE~~GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD 318 (444)
T COG1220 240 IKQEAIDAAEQNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD 318 (444)
T ss_pred HHHHHHHHHHhcCeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh
Confidence 99999999999999999999999999773 44599999999999999999999999999999999999999999999999
Q ss_pred CchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeecc
Q psy2392 1087 LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVII 1162 (1165)
Q Consensus 1087 l~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar 1162 (1165)
|+|||||||||||+|++||.+||++||++|++++++||++||+||||.|.||||||+.||++||++|..++|||||
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGAR 394 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGAR 394 (444)
T ss_pred cChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-80 Score=706.75 Aligned_cols=436 Identities=61% Similarity=0.984 Sum_probs=406.5
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++|.++.+.|++.|+||++|++.+..+++++|+|.++...++....|+++||+||||||||++|++||+.++.+|+.+|+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 36899999999999999999999999999999999887776666678999999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 331 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1165)
+.|+++||+|.+.+..+++++..++...+.+.+.+.+..+.+.|++++++.|++...+. +.. -..+.....+++.|++
T Consensus 81 t~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~-~~~-~~~~~~~~~~r~~~~~ 158 (441)
T TIGR00390 81 TKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQ-WGQ-TEQQQEPESAREAFRK 158 (441)
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCcccc-ccc-cccccchHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999853221 000 0001122367999999
Q ss_pred HhhcCCCCCcEEEEEecCCC-CcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHH
Q psy2392 332 RLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 410 (1165)
Q Consensus 332 ~~~~g~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1165)
++++|.|||++|+|+++... ++++.++++|+++|..++..|++++.+++++.++|+|+||++++.++|++++++++.++
T Consensus 159 ~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~ 238 (441)
T TIGR00390 159 KLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIK 238 (441)
T ss_pred HHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHH
Confidence 99999999999999997754 67888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 411 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 411 ~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
++|++.+++.|||||||||||+.+. .+.++|+|++|||++|||++||++|+++||.|+|+||||||+|||+..+|+||+
T Consensus 239 ~~a~~~~e~~GIVfiDEiDKIa~~~-~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlI 317 (441)
T TIGR00390 239 QEAIDAVEQSGIIFIDEIDKIAKKG-ESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLI 317 (441)
T ss_pred HHHHHHHHcCCEEEEEchhhhcccC-CCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhcc
Confidence 9999999999999999999999876 345899999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
|||+||||++|+|++|+.++|++||++|++++++||+++|+++|++|.|+++|+++||+.|+.+|...+|+|||+|++++
T Consensus 318 PEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrtil 397 (441)
T TIGR00390 318 PELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVL 397 (441)
T ss_pred HHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 571 EKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
|+++++++|++|+.. ++||.+||++.+..++++.||||||
T Consensus 398 E~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~~~DlsryI 440 (441)
T TIGR00390 398 ERLLEDISFEAPDLSGQNITIDADYVSKKLGALVADEDLSRFI 440 (441)
T ss_pred HHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHhcCCccccc
Confidence 999999999999864 8999999999999999999999997
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=701.19 Aligned_cols=436 Identities=65% Similarity=1.021 Sum_probs=407.8
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++|.++.+.|++.|+||++|++.++.+++.+|+|.++..+.+....|+++||+||||||||++|++||+.++.+|+++|+
T Consensus 4 ~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 4 LTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred CCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 57999999999999999999999999999999999888777766677999999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 331 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1165)
++|+++||+|.+.+..+++++..++..++++....++..+.+.|++++++.|++..... ....+.+.....+++.|++
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~--~~~~~~~~~~~~~r~~~~~ 161 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNN--WGEEEEKEEISATRQKFRK 161 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC--ccccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999843210 0000111223467999999
Q ss_pred HhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHH
Q psy2392 332 RLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411 (1165)
Q Consensus 332 ~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1165)
++++|.|||++|+|++++..+++++++++|++++..++..|++++.+++++.++|+|+||++++.++|++++++++++++
T Consensus 162 ~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~ 241 (443)
T PRK05201 162 KLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQ 241 (443)
T ss_pred HHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 99999999999999998865667777788999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch
Q psy2392 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP 491 (1165)
Q Consensus 412 ~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p 491 (1165)
+|+..+++.|||||||||||+.+..+ ++.|+|++|||++|||++||++|+++|+.|+|+||||||+|||+..+|+||+|
T Consensus 242 ~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIP 320 (443)
T PRK05201 242 EAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIP 320 (443)
T ss_pred HHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccH
Confidence 99999999999999999999988654 58899999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 492 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
||+||||++|+|++|++++|++||++|++++++||+++|+++|++|.|+++|+++||+.|+..|...+++|||+|++++|
T Consensus 321 El~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E 400 (443)
T PRK05201 321 ELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVME 400 (443)
T ss_pred HHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 572 KLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 572 ~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
+++++++|++|+.. +.||.++|+..+.+++.+.||+|||
T Consensus 401 ~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~~~~DlskyI 442 (443)
T PRK05201 401 KLLEDISFEAPDMSGETVTIDAAYVDEKLGDLVKDEDLSRYI 442 (443)
T ss_pred HHHHHHhccCCCCCCCEEEECHHHHHHHHHHHHhcCCccccc
Confidence 99999999999865 8999999999999999999999997
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-79 Score=695.40 Aligned_cols=388 Identities=62% Similarity=0.989 Sum_probs=361.9
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
++|.++.+.|+++|+||++|++.+..++..+|++.++....+....|+++||+||||||||++|+++|+.++.||+.+|+
T Consensus 1 ltP~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda 80 (441)
T TIGR00390 1 MTPREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 80 (441)
T ss_pred CCHHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence 47899999999999999999999999999999999887766666667999999999999999999999999999999999
Q ss_pred CCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccC--C-cccchhhHHH
Q psy2392 850 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFN--N-ENNNISTRQI 926 (1165)
Q Consensus 850 se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~--~-~~~~~~~r~~ 926 (1165)
++|++.||+|.+.+..++++|..|+...+.+.+++++......|+.|++++||+.... .++ + ..+...+|+.
T Consensus 81 t~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~-----~~~~~~~~~~~~~~r~~ 155 (441)
T TIGR00390 81 TKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKN-----QWGQTEQQQEPESAREA 155 (441)
T ss_pred ceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccc-----cccccccccchHHHHHH
Confidence 9999999999988899999999999998889999999999999999999999985211 111 1 1123467999
Q ss_pred HHHhhccCCCCCeEEEEEecCCC-CcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
|+++|+.|.|||++|+|++++.. +.+++++++||++|...+..|++.+.+++++++++||+||+++|.++|+++++|++
T Consensus 156 ~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~ 235 (441)
T TIGR00390 156 FRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPE 235 (441)
T ss_pred HHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChH
Confidence 99999999999999999998764 45888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~ 1085 (1165)
.|.+.|++++++.|||||||||||++++. +++.|+|++|||++|||++||++|+||||.++|+||||||+||||..+|+
T Consensus 236 ~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~ 314 (441)
T TIGR00390 236 EIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPS 314 (441)
T ss_pred HHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChh
Confidence 99999999999999999999999998863 46899999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1086 DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1086 dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
||+|||+||||++|+|++|+++||++||++|+|++++||+++|+++||+|.||++|+++||+.|+++|+.++|||||-
T Consensus 315 DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~ 392 (441)
T TIGR00390 315 DLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARR 392 (441)
T ss_pred hccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-79 Score=695.30 Aligned_cols=392 Identities=65% Similarity=1.012 Sum_probs=364.9
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++.+.|++.|+||++|++.+..++..+|++.++..+.+....|+++||+||||||||++|++||+.++.||+.+|
T Consensus 3 ~~~p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 3 ELTPREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CCCHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 46799999999999999999999999999999999988877766666799999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
+++|+++||+|.+.+..++++|..|+..++++....++....+.|+.|+++.|++..... ......+.+...+|+.|+
T Consensus 83 ~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~--~~~~~~~~~~~~~r~~~~ 160 (443)
T PRK05201 83 ATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNN--WGEEEEKEEISATRQKFR 160 (443)
T ss_pred chhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCC--ccccccchhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999842110 000011122446799999
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
++|+.|.|||++|+|++++..+.+++++++||+++...+..|++.+.+++++++++|||||+++|.++|+++++|.++|.
T Consensus 161 ~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~ 240 (443)
T PRK05201 161 KKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIK 240 (443)
T ss_pred HHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHH
Confidence 99999999999999999986666888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
+.|+++++++|||||||||||++++++ ++.|+|++|||++|||++||++|+||||.++|+||||||+||||.++|+||+
T Consensus 241 ~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlI 319 (443)
T PRK05201 241 QEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLI 319 (443)
T ss_pred HHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhcc
Confidence 999999999999999999999998654 6889999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
|||+||||++|+|++|+++||++||++|++++++||+++|+++||+|.||++|+++||+.|+++|+..+|||||-
T Consensus 320 PEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~ 394 (443)
T PRK05201 320 PELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARR 394 (443)
T ss_pred HHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999994
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-72 Score=676.91 Aligned_cols=396 Identities=24% Similarity=0.339 Sum_probs=344.3
Q ss_pred ccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHH
Q psy2392 9 SAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEK 86 (1165)
Q Consensus 9 ~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~ 86 (1165)
|||-..++.||++||| |||||+|+||||||++|||||||||+||+|| || +|. |.|||+++|+.||+|++++||.
T Consensus 276 GAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RR--FQ-~V~-V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 276 GAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERR--FQ-KVL-VDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred CCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhc--Cc-eee-CCCCCHHHHHHHHHHHHHHHHH
Confidence 4554322379999999 9999999999999999999999999999999 99 788 9999999999999999999999
Q ss_pred Hhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhhhccCCCCccCcccccccccc-------c-------
Q psy2392 87 HQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAIGS-------G------- 145 (1165)
Q Consensus 87 ~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~-------~------- 145 (1165)
||+ +||++||+||+|||++|+||||| ++|+|||+.++... .|.....++..+.++.. .
T Consensus 352 hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~ 430 (786)
T COG0542 352 HHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKK 430 (786)
T ss_pred ccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 999 99999999999999999999985 59999999998543 34332233332222110 0
Q ss_pred ----------------------chhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhh
Q psy2392 146 ----------------------GIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNR 202 (1165)
Q Consensus 146 ----------------------~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~ 202 (1165)
.+....+|.++++||++|...+.+++ ..+.++++.|.+.|+||++|+..|..+|+..
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra 510 (786)
T COG0542 431 LIDEIIKLKEGRIPELEKELEAEVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA 510 (786)
T ss_pred HHHHHHHHhhhhhhhHHHHHhhccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH
Confidence 01123489999999999999887754 8899999999999999999999999999988
Q ss_pred hhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC---CCceEEecccccc-----------ccccccchhhHH
Q psy2392 203 WRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATKFTE-----------VGYVGRDVDTII 268 (1165)
Q Consensus 203 ~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~---~~~i~ld~s~~~~-----------~GyvG~~~~~~l 268 (1165)
|+|+.++.+|. ++|||.||||||||+||++||..+. .+++++|||+|++ ||||||++++.+
T Consensus 511 --RaGL~dp~rPi---gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~L 585 (786)
T COG0542 511 --RAGLGDPNRPI---GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQL 585 (786)
T ss_pred --hcCCCCCCCCc---eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccch
Confidence 99999999987 8999999999999999999999994 8999999999998 799999999988
Q ss_pred HHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEec
Q psy2392 269 RDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 348 (1165)
Q Consensus 269 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~ 348 (1165)
++.++.
T Consensus 586 TEaVRr-------------------------------------------------------------------------- 591 (786)
T COG0542 586 TEAVRR-------------------------------------------------------------------------- 591 (786)
T ss_pred hHhhhc--------------------------------------------------------------------------
Confidence 888866
Q ss_pred CCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecc
Q psy2392 349 DTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEI 428 (1165)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEi 428 (1165)
.|++||++|||
T Consensus 592 ---------------------------------------------------------------------~PySViLlDEI 602 (786)
T COG0542 592 ---------------------------------------------------------------------KPYSVILLDEI 602 (786)
T ss_pred ---------------------------------------------------------------------CCCeEEEechh
Confidence 27999999999
Q ss_pred hhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC----------CC-----------
Q psy2392 429 DKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA----------KP----------- 486 (1165)
Q Consensus 429 dki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~----------~p----------- 486 (1165)
+|.|+. |.+.||+++|.+..+...| .|++.|.++|+|.+.... .+
T Consensus 603 EKAHpd-------------V~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~ 669 (786)
T COG0542 603 EKAHPD-------------VFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVME 669 (786)
T ss_pred hhcCHH-------------HHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHH
Confidence 999998 8889999999988887655 899999999998654310 01
Q ss_pred ---CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCc
Q psy2392 487 ---SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGA 563 (1165)
Q Consensus 487 ---~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GA 563 (1165)
..|.|||+||++.+|.|++|+++++.+|+ ..++.+....|..+++.|.+++++.++|++.+|+ +.+||
T Consensus 670 ~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv----~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd-----~~~GA 740 (786)
T COG0542 670 ELKKHFRPEFLNRIDEIIPFNPLSKEVLERIV----DLQLNRLAKRLAERGITLELSDEAKDFLAEKGYD-----PEYGA 740 (786)
T ss_pred HHHhhCCHHHHhhcccEEeccCCCHHHHHHHH----HHHHHHHHHHHHhCCceEEECHHHHHHHHHhccC-----CCcCc
Confidence 13899999999999999999999999999 6788888888888899999999999999999999 69999
Q ss_pred chhHHHHHHHHHHhhc
Q psy2392 564 RRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 564 R~l~~~ie~~l~~~~~ 579 (1165)
|+|+++|++.+++...
T Consensus 741 RpL~R~Iq~~i~~~La 756 (786)
T COG0542 741 RPLRRAIQQEIEDPLA 756 (786)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999998877643
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-63 Score=605.54 Aligned_cols=383 Identities=24% Similarity=0.342 Sum_probs=306.7
Q ss_pred eeeecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHH
Q psy2392 622 LSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVEL 696 (1165)
Q Consensus 622 ~aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~L 696 (1165)
.+||||+++||||||++|||+|||||+||+|| || +|. |.|||.++|+.||+|++++||.||+ +||.+||+|
T Consensus 293 PaLARGeL~~IGATT~~EYRk~iEKD~AL~RR--FQ-~V~-V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~L 368 (786)
T COG0542 293 PALARGELRCIGATTLDEYRKYIEKDAALERR--FQ-KVL-VDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTL 368 (786)
T ss_pred HHHhcCCeEEEEeccHHHHHHHhhhchHHHhc--Cc-eee-CCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHH
Confidence 36889999999999999999999999999999 99 898 9999999999999999999999999 999999999
Q ss_pred HHHHhcccccchH--HHHhhhhhhhhhhhhcCCCCccCcccc----------------------cc--------------
Q psy2392 697 AKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENG----------------------IG-------------- 738 (1165)
Q Consensus 697 S~ryi~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~----------------------i~-------------- 738 (1165)
|+|||++|+|||| |++|++|++.++... .+....+.+.. +.
T Consensus 369 S~RYI~dR~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~ 447 (786)
T COG0542 369 SDRYIPDRFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELE 447 (786)
T ss_pred HHhhcccCCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999999996 559999998887432 11110000000 00
Q ss_pred -ccccccccHHHHHHHhhhccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCC
Q psy2392 739 -AIGSGGIFAQSAAKALQENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITP 816 (1165)
Q Consensus 739 -~i~~~~~~~~~~a~~l~~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~ 816 (1165)
.+.. ++....++.+++.||++|...+.. +.....++++.|.+.|+||++|++.+..+|... |.|+.++.+| .
T Consensus 448 ~~~~~-~v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrra--RaGL~dp~rP---i 521 (786)
T COG0542 448 KELEA-EVDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRA--RAGLGDPNRP---I 521 (786)
T ss_pred HHHhh-ccCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHH--hcCCCCCCCC---c
Confidence 0001 134456899999999999998754 788899999999999999999999999999987 9999998887 5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC---CCeEEEecCCccc-----------ccccccChhhHHHHHHHHHHhhhhhhHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEI 882 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~se~~~-----------~GyvG~~~~~~l~~lf~~a~~~~~~~~~ 882 (1165)
++|||.||||||||+||++||..+. .+++++|||+|++ ||||||++++.+++. ++.+||
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEa-------VRr~Py 594 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEA-------VRRKPY 594 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHh-------hhcCCC
Confidence 8999999999999999999999995 8899999999997 699999999999886 456799
Q ss_pred HHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCC-CCeEEEEEecCCCCcccccCCcchH
Q psy2392 883 NKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL-DNKEIEIELNDTGPHMEIMSPPGME 961 (1165)
Q Consensus 883 ~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~l-d~r~v~i~~~~~~~~~~~~~~~~~~ 961 (1165)
++++++++|+||++|+|+|||. |++|+| |+.--+|++
T Consensus 595 SViLlDEIEKAHpdV~nilLQV--------------------------lDdGrLTD~~Gr~VdF---------------- 632 (786)
T COG0542 595 SVILLDEIEKAHPDVFNLLLQV--------------------------LDDGRLTDGQGRTVDF---------------- 632 (786)
T ss_pred eEEEechhhhcCHHHHHHHHHH--------------------------hcCCeeecCCCCEEec----------------
Confidence 9999999999999999999884 788988 332222222
Q ss_pred HHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCC-----
Q psy2392 962 EMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN----- 1036 (1165)
Q Consensus 962 ~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~----- 1036 (1165)
.+.||+. +++-++.
T Consensus 633 -------------------------------------------------------rNtiIIm------TSN~Gs~~i~~~ 651 (786)
T COG0542 633 -------------------------------------------------------RNTIIIM------TSNAGSEEILRD 651 (786)
T ss_pred -------------------------------------------------------ceeEEEE------ecccchHHHHhh
Confidence 2223332 1110000
Q ss_pred C--CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1037 N--NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1037 ~--~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
. ......+..+..+.+.+- ..|.|||++|+.-+|.|.+|+++++.+|++
T Consensus 652 ~~~~~~~~~~~~~~~v~~~l~-----------------------------~~F~PEFLNRid~II~F~~L~~~~l~~Iv~ 702 (786)
T COG0542 652 ADGDDFADKEALKEAVMEELK-----------------------------KHFRPEFLNRIDEIIPFNPLSKEVLERIVD 702 (786)
T ss_pred ccccccchhhhHHHHHHHHHH-----------------------------hhCCHHHHhhcccEEeccCCCHHHHHHHHH
Confidence 0 000011112222222221 157899999999888999999999999999
Q ss_pred hhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1115 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1115 ~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
.++.+....|...|+.|.|++++.++|++.+|+- ..|||.
T Consensus 703 ----~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~-----~~GARp 742 (786)
T COG0542 703 ----LQLNRLAKRLAERGITLELSDEAKDFLAEKGYDP-----EYGARP 742 (786)
T ss_pred ----HHHHHHHHHHHhCCceEEECHHHHHHHHHhccCC-----CcCchH
Confidence 8888888889988999999999999999999997 666663
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=537.15 Aligned_cols=383 Identities=20% Similarity=0.322 Sum_probs=320.1
Q ss_pred ccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHH
Q psy2392 9 SAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEK 86 (1165)
Q Consensus 9 ~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~ 86 (1165)
+++.+..+.+|.+|+| +|+||+|+||||||++||++|+++|+||.|| || +|. |+|||.++++.||++++++||.
T Consensus 292 g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rR--Fq-~I~-v~ePs~~~~~~IL~~~~~~ye~ 367 (758)
T PRK11034 292 GAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KID-ITEPSIEETVQIINGLKPKYEA 367 (758)
T ss_pred ccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhh--Cc-EEE-eCCCCHHHHHHHHHHHHHHhhh
Confidence 4444344568999999 9999999999999999999999999999999 99 665 9999999999999999999999
Q ss_pred Hhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhc
Q psy2392 87 HQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQEN 159 (1165)
Q Consensus 87 ~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~ 159 (1165)
||+ +|+++|++||+|||++|+||||+ ++|+||++.+.. +.. .. ...+....+++++++|
T Consensus 368 ~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~----~~~-----~~-----~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 368 HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM----PVS-----KR-----KKTVNVADIESVVARI 433 (758)
T ss_pred ccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccC----ccc-----cc-----ccccChhhHHHHHHHH
Confidence 999 99999999999999999999985 589999988762 100 00 0112234678899999
Q ss_pred cccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHH
Q psy2392 160 TELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRL 238 (1165)
Q Consensus 160 t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~l 238 (1165)
|++|...+..+. ..+..+.+.|++.|+||++|++.|..++... +.|+..+.+|. +++||+||||||||++|+++
T Consensus 434 tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~--~~gl~~~~kp~---~~~Lf~GP~GvGKT~lAk~L 508 (758)
T PRK11034 434 ARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMS--RAGLGHEHKPV---GSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_pred hCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHH--hccccCCCCCc---ceEEEECCCCCCHHHHHHHH
Confidence 999999987654 7889999999999999999999999999876 77887766665 79999999999999999999
Q ss_pred HHHhCCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy2392 239 AKLSNAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSK 307 (1165)
Q Consensus 239 A~~l~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (1165)
|+.++.+|+++||++|.+ +||+|++.++.+++.+..
T Consensus 509 A~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~--------------------------------- 555 (758)
T PRK11034 509 SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK--------------------------------- 555 (758)
T ss_pred HHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHh---------------------------------
Confidence 999999999999999865 344444433322222211
Q ss_pred cCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceee
Q psy2392 308 EKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387 (1165)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1165)
T Consensus 556 -------------------------------------------------------------------------------- 555 (758)
T PRK11034 556 -------------------------------------------------------------------------------- 555 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-
Q psy2392 388 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG- 466 (1165)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~- 466 (1165)
.+++|||||||||+++. ||+.||+++|.+.++...|
T Consensus 556 ------------------------------~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~ 592 (758)
T PRK11034 556 ------------------------------HPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGR 592 (758)
T ss_pred ------------------------------CCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCc
Confidence 26899999999999866 8889999999777655433
Q ss_pred eecCceEEEEEeCCccc------------CCC---------CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHH
Q psy2392 467 IIKTDHILFIASGAFHL------------AKP---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQ 525 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~------------~~p---------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~ 525 (1165)
.++.+|++||+|++... .++ ..|.|||++|+|.+|.|++|+.+++.+|+ ...+.+
T Consensus 593 ~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~----~~~l~~ 668 (758)
T PRK11034 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVE 668 (758)
T ss_pred eecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHH----HHHHHH
Confidence 67889999999977431 111 23889999999999999999999999999 567777
Q ss_pred HHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 526 YEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 526 ~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
..+.++.+|+.+.++++++++|++.+|+ +.+|||+|+++|++.+.+...
T Consensus 669 ~~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GAR~l~r~i~~~l~~~la 717 (758)
T PRK11034 669 LQAQLDQKGVSLEVSQEARDWLAEKGYD-----RAMGARPMARVIQDNLKKPLA 717 (758)
T ss_pred HHHHHHHCCCCceECHHHHHHHHHhCCC-----CCCCCchHHHHHHHHHHHHHH
Confidence 7888899999999999999999999998 589999999999999877643
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=533.58 Aligned_cols=389 Identities=20% Similarity=0.287 Sum_probs=314.9
Q ss_pred Ccccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh---
Q psy2392 15 MEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG--- 89 (1165)
Q Consensus 15 ~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~--- 89 (1165)
.+.+|++|+| +|+||+|+||||||++||++||++||||.|| || .| .|+|||.++++.||+++++.||.||+
T Consensus 299 ~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rR--f~-~i-~v~eps~~~~~~iL~~~~~~~e~~~~v~i 374 (852)
T TIGR03345 299 AGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRR--FQ-VV-KVEEPDEETAIRMLRGLAPVLEKHHGVLI 374 (852)
T ss_pred cccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHh--Ce-EE-EeCCCCHHHHHHHHHHHHHhhhhcCCCee
Confidence 3467899999 9999999999999999999999999999999 99 55 59999999999999999999999998
Q ss_pred --HHHHHHHHHHHhhcCCCCchhHHH--HHhhhhhhhhhhccCCCCccCcccc---------------------------
Q psy2392 90 --NLMRASVELAKEWRNDRTLRRLEA--MLLTANRETTLIITGNGDVLEPENG--------------------------- 138 (1165)
Q Consensus 90 --~al~~~v~ls~rYi~~r~lPDkal--ld~a~a~~~~~~~~~~~~~~~~e~~--------------------------- 138 (1165)
+||.+++.||+|||++|+|||||+ +|+||+++++...+.+.....+++.
T Consensus 375 ~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (852)
T TIGR03345 375 LDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAE 454 (852)
T ss_pred CHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHH
Confidence 999999999999999999999855 9999999986422111100000000
Q ss_pred -----------cccc-------------------------------------------------------cccchhhHHH
Q psy2392 139 -----------IGAI-------------------------------------------------------GSGGIFAQSA 152 (1165)
Q Consensus 139 -----------~~~~-------------------------------------------------------~~~~~~~~~v 152 (1165)
+..+ ....+....+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i 534 (852)
T TIGR03345 455 LRAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAV 534 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHH
Confidence 0000 0011334578
Q ss_pred HHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCc
Q psy2392 153 AKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGK 231 (1165)
Q Consensus 153 a~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GK 231 (1165)
|+++++|||+|...+..++ .++.++.+.|++.|+||++|++.++.++... +.|+..+.+|. +.+||+|||||||
T Consensus 535 ~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--~~gl~~~~~p~---~~~lf~Gp~GvGK 609 (852)
T TIGR03345 535 AEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--RAGLEDPRKPL---GVFLLVGPSGVGK 609 (852)
T ss_pred HHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--hcCCCCCCCCc---eEEEEECCCCCCH
Confidence 8899999999999987754 7899999999999999999999999999876 78888777665 6899999999999
Q ss_pred hHHHHHHHHHh---CCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHH
Q psy2392 232 TEIARRLAKLS---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 297 (1165)
Q Consensus 232 T~lAk~lA~~l---~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1165)
|++|++||+.+ ...|+++||++|.+ |||+|++.++.+.+.++.
T Consensus 610 T~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~----------------------- 666 (852)
T TIGR03345 610 TETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRR----------------------- 666 (852)
T ss_pred HHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHh-----------------------
Confidence 99999999999 46889999999865 577777765544433322
Q ss_pred HHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcC
Q psy2392 298 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 377 (1165)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1165)
T Consensus 667 -------------------------------------------------------------------------------- 666 (852)
T TIGR03345 667 -------------------------------------------------------------------------------- 666 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhccccc
Q psy2392 378 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 457 (1165)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~E 457 (1165)
.+++||+||||||+++. +++.||++++
T Consensus 667 ----------------------------------------~p~svvllDEieka~~~-------------v~~~Llq~ld 693 (852)
T TIGR03345 667 ----------------------------------------KPYSVVLLDEVEKAHPD-------------VLELFYQVFD 693 (852)
T ss_pred ----------------------------------------CCCcEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 27899999999999876 7789999999
Q ss_pred Cceeeeece-eecCceEEEEEeCCcccC---------C--CC--------------CCchhhhCCCCeeEecCCCCHHHH
Q psy2392 458 GTTVNTKYG-IIKTDHILFIASGAFHLA---------K--PS--------------DLIPELQGRFPIRVELDSLSISDF 511 (1165)
Q Consensus 458 g~~v~~~~~-~~~t~~ilfI~~gaf~~~---------~--p~--------------~l~pel~~R~~~~v~~~~L~~~~l 511 (1165)
.+.++...| .+++.|.+||+|.+.... . |. .|.|||+||++ +|.|+||+.+++
T Consensus 694 ~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l 772 (852)
T TIGR03345 694 KGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVL 772 (852)
T ss_pred cceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHH
Confidence 887766554 788999999998664311 1 21 28999999998 679999999999
Q ss_pred HHHHhhhhHhHHHHHHHHHhhc-CCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 512 TRIMTSTNVCLTKQYEALLATE-GIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 512 ~~Il~~~~~~l~~~~~~ll~~~-~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+|+. ..+.+....+... |+.+.++++++++|++.+++ +.+|||+|+++|++.+.+..
T Consensus 773 ~~Iv~----~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~-----~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 773 AAIVR----LKLDRIARRLKENHGAELVYSEALVEHIVARCTE-----VESGARNIDAILNQTLLPEL 831 (852)
T ss_pred HHHHH----HHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCC-----CCCChHHHHHHHHHHHHHHH
Confidence 99995 3344433334444 99999999999999999987 58999999999999876653
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-52 Score=513.89 Aligned_cols=351 Identities=21% Similarity=0.334 Sum_probs=286.6
Q ss_pred ecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Q psy2392 625 RRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKE 699 (1165)
Q Consensus 625 aRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~r 699 (1165)
+||+++||||||+.||++|+++|+|+.|| |+ +|. +.||+.++++.||++++++||.||+ +|+.++++||.|
T Consensus 312 ~~g~i~vIgATt~~E~~~~~~~D~AL~rR--Fq-~I~-v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r 387 (758)
T PRK11034 312 SSGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KID-ITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_pred hCCCeEEEecCChHHHHHHhhccHHHHhh--Cc-EEE-eCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence 47889999999999999999999999999 99 666 9999999999999999999999999 999999999999
Q ss_pred HhcccccchHH--HHhhhhhhhhhhhhcCCCCccCccccccccccccccHHHHHHHhhhccCCChHHHHH-hhhHHHHHH
Q psy2392 700 WRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIK-KSLVIAEIV 776 (1165)
Q Consensus 700 yi~~R~lPDkd--lid~a~a~~~~~~~s~~~~~~~~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i~~-~~~~~~~l~ 776 (1165)
|+++|+||||+ ++|++|+..+..... .. ...+....++.+++.||++|...+.. +..+...+.
T Consensus 388 yi~~r~lPdKaidlldea~a~~~~~~~~---------~~-----~~~v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~ 453 (758)
T PRK11034 388 YINDRHLPDKAIDVIDEAGARARLMPVS---------KR-----KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLG 453 (758)
T ss_pred cccCccChHHHHHHHHHHHHhhccCccc---------cc-----ccccChhhHHHHHHHHhCCChhhhhhhHHHHHHHHH
Confidence 99999999964 588888876542100 00 11233456788899999988887753 667889999
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc-
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV- 855 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~- 855 (1165)
+.|.+.|+||++|++.+..++... +.|+..+.+| .+++||+||||||||++|+++|+.++.+|+++||++|.+.
T Consensus 454 ~~L~~~ViGQ~~ai~~l~~~i~~~--~~gl~~~~kp---~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~ 528 (758)
T PRK11034 454 DRLKMLVFGQDKAIEALTEAIKMS--RAGLGHEHKP---VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERH 528 (758)
T ss_pred HHhcceEeCcHHHHHHHHHHHHHH--hccccCCCCC---cceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccc
Confidence 999999999999999999999865 6677665554 4789999999999999999999999999999999998652
Q ss_pred ----------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHH
Q psy2392 856 ----------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925 (1165)
Q Consensus 856 ----------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~ 925 (1165)
||+|++.++.+.+
T Consensus 529 ~~~~LiG~~~gyvg~~~~g~L~~--------------------------------------------------------- 551 (758)
T PRK11034 529 TVSRLIGAPPGYVGFDQGGLLTD--------------------------------------------------------- 551 (758)
T ss_pred cHHHHcCCCCCcccccccchHHH---------------------------------------------------------
Confidence 3333332222111
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
T Consensus 552 -------------------------------------------------------------------------------- 551 (758)
T PRK11034 552 -------------------------------------------------------------------------------- 551 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCC---
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL--- 1081 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~--- 1081 (1165)
++. ..+.+|||+|||||+... ||+.||+++|.+.++...| .++..|.+||++++...
T Consensus 552 -----~v~-~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~ 612 (758)
T PRK11034 552 -----AVI-KHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRET 612 (758)
T ss_pred -----HHH-hCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHH
Confidence 111 115689999999999765 9999999999766654333 57888999999977331
Q ss_pred ---------CCC---------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHH
Q psy2392 1082 ---------AKP---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 1143 (1165)
Q Consensus 1082 ---------~~p---------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~ 1143 (1165)
.++ ..|.|||++|++.+|.|.||+.+++.+|+. ..+.+.++.++.+|++|.|++++++
T Consensus 613 ~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~----~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 613 ERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred hhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHH----HHHHHHHHHHHHCCCCceECHHHHH
Confidence 111 237899999999999999999999999998 6778888888999999999999999
Q ss_pred HHHHHHhccCcCCce
Q psy2392 1144 RLAEIAYCINERTEN 1158 (1165)
Q Consensus 1144 ~ia~~a~~~~~~~~n 1158 (1165)
+|++.+|+.+.||+.
T Consensus 689 ~l~~~~~~~~~GAR~ 703 (758)
T PRK11034 689 WLAEKGYDRAMGARP 703 (758)
T ss_pred HHHHhCCCCCCCCch
Confidence 999999998544443
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=515.80 Aligned_cols=350 Identities=20% Similarity=0.306 Sum_probs=286.9
Q ss_pred ecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Q psy2392 625 RRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKE 699 (1165)
Q Consensus 625 aRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~r 699 (1165)
+||+++||||||..||++|+++|+|+.|| |+ .|. +.||+.+++..||++++.+||.||+ +|+.+++.+|.|
T Consensus 308 ~~g~i~~IgaTt~~e~~~~~~~d~al~rR--f~-~i~-v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 308 SSGKLRCIGSTTYEEYKNHFEKDRALSRR--FQ-KID-VGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred hCCCeEEEEecCHHHHHHHhhhhHHHHHh--Cc-eEE-eCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 47889999999999999999999999999 99 665 9999999999999999999999998 999999999999
Q ss_pred HhcccccchHH--HHhhhhhhhhhhhhcCCCCccCccccccccccccccHHHHHHHhhhccCCChHHHH-HhhhHHHHHH
Q psy2392 700 WRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEII-KKSLVIAEIV 776 (1165)
Q Consensus 700 yi~~R~lPDkd--lid~a~a~~~~~~~s~~~~~~~~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i~-~~~~~~~~l~ 776 (1165)
|+++|+||||+ ++|++++..+..... . ....+....++.+++.||++|+..+. .+..+..+++
T Consensus 384 yi~~r~~P~kai~lld~a~a~~~~~~~~--~------------~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~ 449 (731)
T TIGR02639 384 YINDRFLPDKAIDVIDEAGASFRLRPKA--K------------KKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLE 449 (731)
T ss_pred ccccccCCHHHHHHHHHhhhhhhcCccc--c------------cccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHH
Confidence 99999999965 478887765542100 0 01234556788899999999987764 4678899999
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc--
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE-- 854 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~-- 854 (1165)
+.|++.|+||+++++.+..++... +.|+.++.+| .+++||+||||||||++|+++|+.++.+|+++||++|.+
T Consensus 450 ~~l~~~v~GQ~~ai~~l~~~i~~~--~~g~~~~~~p---~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 450 KNLKAKIFGQDEAIDSLVSSIKRS--RAGLGNPNKP---VGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKH 524 (731)
T ss_pred HHHhcceeCcHHHHHHHHHHHHHH--hcCCCCCCCC---ceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcc
Confidence 999999999999999999998855 7777766555 468999999999999999999999999999999999865
Q ss_pred ---------ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHH
Q psy2392 855 ---------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925 (1165)
Q Consensus 855 ---------~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~ 925 (1165)
+||+|++.++.+.+.
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~-------------------------------------------------------- 548 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEA-------------------------------------------------------- 548 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHH--------------------------------------------------------
Confidence 244444433222211
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
T Consensus 549 -------------------------------------------------------------------------------- 548 (731)
T TIGR02639 549 -------------------------------------------------------------------------------- 548 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCC--
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA-- 1082 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~-- 1082 (1165)
+. ..+.+|||||||||+... +|+.||+++|++.++...| .++..|.+||++...-..
T Consensus 549 ------~~-~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~ 608 (731)
T TIGR02639 549 ------VR-KHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEM 608 (731)
T ss_pred ------HH-hCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhh
Confidence 11 125689999999999765 9999999999887765445 678889999997644210
Q ss_pred -C---------C---------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHH
Q psy2392 1083 -K---------P---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQ 1143 (1165)
Q Consensus 1083 -~---------p---------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~ 1143 (1165)
+ + ..|.|||++||+-+|.|+||+.+++.+|+. ..+.+....++..|++|.+++++++
T Consensus 609 ~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~----~~L~~l~~~l~~~~~~l~i~~~a~~ 684 (731)
T TIGR02639 609 SKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQ----KFVDELSKQLNEKNIKLELTDDAKK 684 (731)
T ss_pred hhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHH----HHHHHHHHHHHhCCCeEEeCHHHHH
Confidence 1 0 237899999999999999999999999999 5666667777888999999999999
Q ss_pred HHHHHHhccCcCCceeecc
Q psy2392 1144 RLAEIAYCINERTENIVII 1162 (1165)
Q Consensus 1144 ~ia~~a~~~~~~~~nigar 1162 (1165)
+|++.+|+. +.|||
T Consensus 685 ~La~~~~~~-----~~GaR 698 (731)
T TIGR02639 685 YLAEKGYDE-----EFGAR 698 (731)
T ss_pred HHHHhCCCc-----ccCch
Confidence 999999998 55665
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-52 Score=521.07 Aligned_cols=383 Identities=20% Similarity=0.320 Sum_probs=320.6
Q ss_pred CccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHH
Q psy2392 8 SSAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLE 85 (1165)
Q Consensus 8 ~~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE 85 (1165)
.+++.+..+.+|++|+| +|++|+|+||||||++||++|+++|+||.|| || .| .|+|||.++++.||++++.+||
T Consensus 287 ~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~rR--f~-~i-~v~~p~~~~~~~il~~~~~~~e 362 (731)
T TIGR02639 287 VGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSRR--FQ-KI-DVGEPSIEETVKILKGLKEKYE 362 (731)
T ss_pred hccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHHh--Cc-eE-EeCCCCHHHHHHHHHHHHHHHH
Confidence 34554445568999999 9999999999999999999999999999999 99 56 5999999999999999999999
Q ss_pred HHhh-----HHHHHHHHHHHhhcCCCCchhHHH--HHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhh
Q psy2392 86 KHQG-----NLMRASVELAKEWRNDRTLRRLEA--MLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQE 158 (1165)
Q Consensus 86 ~~h~-----~al~~~v~ls~rYi~~r~lPDkal--ld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~ 158 (1165)
.||+ +||.+++.+|+||+++|+|||||+ +|+||+..++.... . + ...+....++.+++.
T Consensus 363 ~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~--~-----~-------~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 363 EFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKA--K-----K-------KANVSVKDIENVVAK 428 (731)
T ss_pred hccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccc--c-----c-------ccccCHHHHHHHHHH
Confidence 9998 999999999999999999999865 89999988763110 0 0 112334477888999
Q ss_pred ccccCchhhhhh-hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHH
Q psy2392 159 NTELMPDEIIKK-SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARR 237 (1165)
Q Consensus 159 ~t~l~~~~i~~~-~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~ 237 (1165)
||++|+..+..+ ..++.++.+.|++.|+||++|++.+..++... +.|+.++.+|. +++||+||||||||++|++
T Consensus 429 ~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~--~~g~~~~~~p~---~~~lf~Gp~GvGKT~lA~~ 503 (731)
T TIGR02639 429 MAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRS--RAGLGNPNKPV---GSFLFTGPTGVGKTELAKQ 503 (731)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHH--hcCCCCCCCCc---eeEEEECCCCccHHHHHHH
Confidence 999999888764 47889999999999999999999999999865 78887777664 7899999999999999999
Q ss_pred HHHHhCCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCC
Q psy2392 238 LAKLSNAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPS 306 (1165)
Q Consensus 238 lA~~l~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 306 (1165)
||+.++.+++++||++|.+ +||+|++.++.+.+.++.
T Consensus 504 la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~-------------------------------- 551 (731)
T TIGR02639 504 LAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRK-------------------------------- 551 (731)
T ss_pred HHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHh--------------------------------
Confidence 9999999999999999865 455555544333322211
Q ss_pred CcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCcccccee
Q psy2392 307 KEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKI 386 (1165)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1165)
T Consensus 552 -------------------------------------------------------------------------------- 551 (731)
T TIGR02639 552 -------------------------------------------------------------------------------- 551 (731)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece
Q psy2392 387 KIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 466 (1165)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~ 466 (1165)
.+++|||||||||+++. +|+.||+++|.+.++...|
T Consensus 552 -------------------------------~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g 587 (731)
T TIGR02639 552 -------------------------------HPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNG 587 (731)
T ss_pred -------------------------------CCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCC
Confidence 26899999999999876 8889999999888776555
Q ss_pred -eecCceEEEEEeCCcccC---C------------------CCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHH
Q psy2392 467 -IIKTDHILFIASGAFHLA---K------------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK 524 (1165)
Q Consensus 467 -~~~t~~ilfI~~gaf~~~---~------------------p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~ 524 (1165)
.++.+|.+||+|++.... + -..|.|||++||+.+|.|+||+.+++.+|+. ..+.
T Consensus 588 ~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~----~~L~ 663 (731)
T TIGR02639 588 RKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQ----KFVD 663 (731)
T ss_pred cccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHH----HHHH
Confidence 678899999998754311 0 0238999999999999999999999999994 5566
Q ss_pred HHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 525 QYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 525 ~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+..+.+...|+.+.++++++++|++.+|+ +++|||+|++.|++.+++..
T Consensus 664 ~l~~~l~~~~~~l~i~~~a~~~La~~~~~-----~~~GaR~l~r~i~~~~~~~l 712 (731)
T TIGR02639 664 ELSKQLNEKNIKLELTDDAKKYLAEKGYD-----EEFGARPLARVIQEEIKKPL 712 (731)
T ss_pred HHHHHHHhCCCeEEeCHHHHHHHHHhCCC-----cccCchHHHHHHHHHhHHHH
Confidence 66677788899999999999999999988 68999999999999987764
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-52 Score=524.25 Aligned_cols=397 Identities=22% Similarity=0.299 Sum_probs=323.2
Q ss_pred CccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHH
Q psy2392 8 SSAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLE 85 (1165)
Q Consensus 8 ~~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE 85 (1165)
.+++.+. +.+|++|+| +|+||+|+||||||++||++|+++||||.|| |+ .| .++||+.+++..||++++++||
T Consensus 284 ~~~g~~~-g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rR--f~-~I-~v~ep~~~e~~aILr~l~~~~e 358 (821)
T CHL00095 284 IGAGAAE-GAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERR--FQ-PV-YVGEPSVEETIEILFGLRSRYE 358 (821)
T ss_pred hcCCCCC-CcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhc--ce-EE-ecCCCCHHHHHHHHHHHHHHHH
Confidence 3444433 357999999 9999999999999999999999999999999 99 56 5999999999999999999999
Q ss_pred HHhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhhhccCCCCccCcccccccc----------------
Q psy2392 86 KHQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPENGIGAI---------------- 142 (1165)
Q Consensus 86 ~~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~~~~~~~~~~~~e~~~~~~---------------- 142 (1165)
+||+ +++.+++.||+||+++|+||||| ++|+||++++....+.+.....+++.+.++
T Consensus 359 ~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (821)
T CHL00095 359 KHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETA 438 (821)
T ss_pred HHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHH
Confidence 9998 99999999999999999999985 599999999874222121111111110000
Q ss_pred -----------------------------cccchhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhH
Q psy2392 143 -----------------------------GSGGIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAK 192 (1165)
Q Consensus 143 -----------------------------~~~~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~ 192 (1165)
....+....+++++++|||+|...+.++. .++..+.+.|++.|+||++|+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai 518 (821)
T CHL00095 439 KQLRDREMEVRAQIAAIIQSKKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAV 518 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHH
Confidence 00224446788999999999999988765 778999999999999999999
Q ss_pred HHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccccc-----------cc
Q psy2392 193 RAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTE-----------VG 258 (1165)
Q Consensus 193 ~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~-----------~G 258 (1165)
+.|..++... +.|+..+.+|. +++||+||||||||++|++||+.+ +.+++++||++|.+ ||
T Consensus 519 ~~l~~~i~~~--~~gl~~~~~p~---~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~g 593 (821)
T CHL00095 519 VAVSKAIRRA--RVGLKNPNRPI---ASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPG 593 (821)
T ss_pred HHHHHHHHHH--hhcccCCCCCc---eEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCc
Confidence 9999999877 88888777765 789999999999999999999998 47899999999854 56
Q ss_pred ccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCC
Q psy2392 259 YVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 338 (1165)
Q Consensus 259 yvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 338 (1165)
|+|+++++.+.+.+..
T Consensus 594 yvg~~~~~~l~~~~~~---------------------------------------------------------------- 609 (821)
T CHL00095 594 YVGYNEGGQLTEAVRK---------------------------------------------------------------- 609 (821)
T ss_pred ccCcCccchHHHHHHh----------------------------------------------------------------
Confidence 6666654433333222
Q ss_pred CCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhc
Q psy2392 339 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE 418 (1165)
Q Consensus 339 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 418 (1165)
.
T Consensus 610 -------------------------------------------------------------------------------~ 610 (821)
T CHL00095 610 -------------------------------------------------------------------------------K 610 (821)
T ss_pred -------------------------------------------------------------------------------C
Confidence 2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec-eeecCceEEEEEeCCcccC-------------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLA------------- 484 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~~------------- 484 (1165)
+++|||||||||+++. +++.||+++|.+.++... ..++++|.+||+|+++...
T Consensus 611 p~~VvllDeieka~~~-------------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~ 677 (821)
T CHL00095 611 PYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFEL 677 (821)
T ss_pred CCeEEEECChhhCCHH-------------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcc
Confidence 6899999999999876 888999999977666543 3788999999999765321
Q ss_pred ------CC--------------CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHH
Q psy2392 485 ------KP--------------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGI 544 (1165)
Q Consensus 485 ------~p--------------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~ 544 (1165)
.. ..|.|||+||++.+|.|+||+.+++.+|+ ...+.+..+.++..|+.|.++++++
T Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv----~~~l~~l~~rl~~~~i~l~~~~~~~ 753 (821)
T CHL00095 678 SENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIA----EIMLKNLFKRLNEQGIQLEVTERIK 753 (821)
T ss_pred cccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHH----HHHHHHHHHHHHHCCcEEEECHHHH
Confidence 00 02889999999999999999999999999 4556666556788899999999999
Q ss_pred HHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 545 QRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 545 ~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
++|++.+|+ +.+|||+|+++|++.+++...
T Consensus 754 ~~La~~~~~-----~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 754 TLLIEEGYN-----PLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred HHHHHhcCC-----CCCChhhHHHHHHHHHHHHHH
Confidence 999999988 589999999999999876644
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=514.35 Aligned_cols=362 Identities=20% Similarity=0.296 Sum_probs=281.9
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAK 698 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ 698 (1165)
|+||+++||||||..||++||++|+||.|| |+ .|. +.||+.+++..||++++..||.||+ +|+.+++++|+
T Consensus 312 l~~G~l~~IgaTT~~e~~~~~~~d~AL~rR--f~-~i~-v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ 387 (852)
T TIGR03345 312 LARGELRTIAATTWAEYKKYFEKDPALTRR--FQ-VVK-VEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSH 387 (852)
T ss_pred hhCCCeEEEEecCHHHHhhhhhccHHHHHh--Ce-EEE-eCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcc
Confidence 468999999999999999999999999999 99 565 9999999999999999999999998 99999999999
Q ss_pred HHhcccccchH--HHHhhhhhhhhhhhhcCCCCcc------------------------Ccccc----------------
Q psy2392 699 EWRNDRTLRRL--EAMLLTANRETTLIITGNGDVL------------------------EPENG---------------- 736 (1165)
Q Consensus 699 ryi~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~------------------------~~~~~---------------- 736 (1165)
||+++|+|||| |++|++|+..++..-+.+.... +....
T Consensus 388 ryi~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (852)
T TIGR03345 388 RYIPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELA 467 (852)
T ss_pred cccccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999996 5599998877653111000000 00000
Q ss_pred ------------c-----------------------------------c------ccccccccHHHHHHHhhhccCCChH
Q psy2392 737 ------------I-----------------------------------G------AIGSGGIFAQSAAKALQENTELMPD 763 (1165)
Q Consensus 737 ------------i-----------------------------------~------~i~~~~~~~~~~a~~l~~~t~~~~~ 763 (1165)
. . .+....+....++.++++||++|..
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~ 547 (852)
T TIGR03345 468 ALEARWQQEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVG 547 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhHHHHHHHHHHHHHHHHHhhccccccceecHHHHHHHHHHHHCCCch
Confidence 0 0 0001225567789999999999998
Q ss_pred HHH-HhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc--
Q psy2392 764 EII-KKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-- 840 (1165)
Q Consensus 764 ~i~-~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-- 840 (1165)
.+. ++..++.++.+.|.+.|+||++|++.+..++... +.|+..+.+| .+.+||+||||||||++|+++|+.+
T Consensus 548 ~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~--~~gl~~~~~p---~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 548 RMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTA--RAGLEDPRKP---LGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred hhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHH--hcCCCCCCCC---ceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 874 4677899999999999999999999999999865 6777766554 3679999999999999999999998
Q ss_pred -CCCeEEEecCCccc-----------ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccC
Q psy2392 841 -NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKS 908 (1165)
Q Consensus 841 -~~~fi~l~~se~~~-----------~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~ 908 (1165)
...|+++||++|.+ +||+|++.++.+.+.+
T Consensus 623 ~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v-------------------------------------- 664 (852)
T TIGR03345 623 GEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAV-------------------------------------- 664 (852)
T ss_pred CCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHH--------------------------------------
Confidence 46789999999865 3677766544433221
Q ss_pred CCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHH
Q psy2392 909 NLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIRE 988 (1165)
Q Consensus 909 ~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~ 988 (1165)
T Consensus 665 -------------------------------------------------------------------------------- 664 (852)
T TIGR03345 665 -------------------------------------------------------------------------------- 664 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-ecc
Q psy2392 989 AIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIK 1067 (1165)
Q Consensus 989 a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~ 1067 (1165)
+. .+.+||+||||||.... +++.||++++.+.++...| .++
T Consensus 665 ------------------------~~-~p~svvllDEieka~~~-------------v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 665 ------------------------RR-KPYSVVLLDEVEKAHPD-------------VLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred ------------------------Hh-CCCcEEEEechhhcCHH-------------HHHHHHHHhhcceeecCCCcEEe
Confidence 11 25689999999987654 8999999998777665445 678
Q ss_pred CceEEEEecCCCCC---------CC--CC--------------CCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHH
Q psy2392 1068 TDHILFIASGAFHL---------AK--PS--------------DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK 1122 (1165)
Q Consensus 1068 t~~ilfI~~gaf~~---------~~--p~--------------dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~ 1122 (1165)
..|.+||++.+... .+ |. .|.|||++|+. .|.|.||+.+++.+|+. ..+.
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~----~~L~ 781 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVR----LKLD 781 (852)
T ss_pred ccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHH----HHHH
Confidence 88999998755421 01 21 28899999998 57899999999999999 3344
Q ss_pred HHHHHH-hhcCCceEeCHHHHHHHHHHHhccCcC
Q psy2392 1123 QYEALL-ATEGIKIEFVDDGIQRLAEIAYCINER 1155 (1165)
Q Consensus 1123 q~~~l~-~~egv~l~~~~~ai~~ia~~a~~~~~~ 1155 (1165)
+....+ ..+|+.+.++++++++|++.+|+...|
T Consensus 782 ~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~G 815 (852)
T TIGR03345 782 RIARRLKENHGAELVYSEALVEHIVARCTEVESG 815 (852)
T ss_pred HHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCC
Confidence 333223 345999999999999999999987333
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-50 Score=505.31 Aligned_cols=366 Identities=22% Similarity=0.300 Sum_probs=290.0
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAK 698 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ 698 (1165)
|+||+++||||||+.||++|+++|+++.|| |+ .|. +.||+.+++..||++++..|++||+ +++.+++++|+
T Consensus 303 l~rg~l~~IgaTt~~ey~~~ie~D~aL~rR--f~-~I~-v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~ 378 (821)
T CHL00095 303 LARGELQCIGATTLDEYRKHIEKDPALERR--FQ-PVY-VGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSD 378 (821)
T ss_pred HhCCCcEEEEeCCHHHHHHHHhcCHHHHhc--ce-EEe-cCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhh
Confidence 458999999999999999999999999999 99 665 9999999999999999999999998 99999999999
Q ss_pred HHhcccccchH--HHHhhhhhhhhhhhhcCCCCccCcccc---------------------------------c------
Q psy2392 699 EWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENG---------------------------------I------ 737 (1165)
Q Consensus 699 ryi~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~---------------------------------i------ 737 (1165)
+|+++|+|||| +++|++|+..+...-+.+......... .
T Consensus 379 ~yi~~r~lPdkaidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (821)
T CHL00095 379 QYIADRFLPDKAIDLLDEAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFETAKQLRDREMEVRAQIAAIIQS 458 (821)
T ss_pred ccCccccCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 558889887765321111000000000 0
Q ss_pred ------cccccccccHHHHHHHhhhccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCC
Q psy2392 738 ------GAIGSGGIFAQSAAKALQENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPL 810 (1165)
Q Consensus 738 ------~~i~~~~~~~~~~a~~l~~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~ 810 (1165)
.......+....++.+++.||++|...+.. +..++.++.+.|.+.|+||++|++.+..++... +.|+..+.
T Consensus 459 ~~~~~~~~~~~~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~--~~gl~~~~ 536 (821)
T CHL00095 459 KKTEEEKRLEVPVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRA--RVGLKNPN 536 (821)
T ss_pred HHhhhcccccCCccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHH--hhcccCCC
Confidence 000113466678999999999999988754 567789999999999999999999999999866 77777665
Q ss_pred CCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCccc-----------ccccccChhhHHHHHHHHHHhh
Q psy2392 811 QQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQ 876 (1165)
Q Consensus 811 ~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~-----------~GyvG~~~~~~l~~lf~~a~~~ 876 (1165)
+| ..++||+||||||||++|++||+.+ ..+++++||++|.+ +||+|++.++.+.+.+
T Consensus 537 ~p---~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~------ 607 (821)
T CHL00095 537 RP---IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAV------ 607 (821)
T ss_pred CC---ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHH------
Confidence 54 4789999999999999999999998 47899999999864 3555555433222211
Q ss_pred hhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccC
Q psy2392 877 TREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMS 956 (1165)
Q Consensus 877 ~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~ 956 (1165)
T Consensus 608 -------------------------------------------------------------------------------- 607 (821)
T CHL00095 608 -------------------------------------------------------------------------------- 607 (821)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCC
Q psy2392 957 PPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN 1036 (1165)
Q Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~ 1036 (1165)
+ ..+.+|||||||||....
T Consensus 608 ----------------------------------------------------~-----~~p~~VvllDeieka~~~---- 626 (821)
T CHL00095 608 ----------------------------------------------------R-----KKPYTVVLFDEIEKAHPD---- 626 (821)
T ss_pred ----------------------------------------------------H-----hCCCeEEEECChhhCCHH----
Confidence 0 014579999999998765
Q ss_pred CCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCC-------------------CC------------
Q psy2392 1037 NNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA-------------------KP------------ 1084 (1165)
Q Consensus 1037 ~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~-------------------~p------------ 1084 (1165)
+|+.||+++|.+.++...| .++..|.+||++.++... ..
T Consensus 627 ---------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 697 (821)
T CHL00095 627 ---------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEE 697 (821)
T ss_pred ---------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHH
Confidence 9999999999776654434 678899999998665321 00
Q ss_pred --CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1085 --SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1085 --~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
..|.|||++|++-+|.|.||+.+++.+|+. ..+.+....++..|+.|.++++++++|++.+|+...||+.
T Consensus 698 ~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~----~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~ 769 (821)
T CHL00095 698 LKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAE----IMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARP 769 (821)
T ss_pred HHHhcCHHHhccCCeEEEeCCCCHHHHHHHHH----HHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhh
Confidence 017799999998889999999999999998 5666665557888999999999999999999998555543
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=501.83 Aligned_cols=389 Identities=23% Similarity=0.341 Sum_probs=313.5
Q ss_pred ccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh-----
Q psy2392 17 KFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG----- 89 (1165)
Q Consensus 17 ~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~----- 89 (1165)
.+|++|+| +|+||+|+||||||++||++||++|+||.|| || +|. |++|+.++++.||++++.+||.||+
T Consensus 287 ~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rR--f~-~i~-v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d 362 (852)
T TIGR03346 287 AMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERR--FQ-PVF-VDEPTVEDTISILRGLKERYEVHHGVRITD 362 (852)
T ss_pred hhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhc--CC-EEE-eCCCCHHHHHHHHHHHHHHhccccCCCCCH
Confidence 47899999 9999999999999999999999999999999 99 676 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHH--HHhhhhhhhhhhccCCCCccCcccccc---------------------------
Q psy2392 90 NLMRASVELAKEWRNDRTLRRLEA--MLLTANRETTLIITGNGDVLEPENGIG--------------------------- 140 (1165)
Q Consensus 90 ~al~~~v~ls~rYi~~r~lPDkal--ld~a~a~~~~~~~~~~~~~~~~e~~~~--------------------------- 140 (1165)
++|.+|+.||+||+++|+|||||+ +|+|||+++....+.+.....+++.+.
T Consensus 363 ~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (852)
T TIGR03346 363 PAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKE 442 (852)
T ss_pred HHHHHHHHhccccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 899999999999999999999864 999999987642222211000000000
Q ss_pred --c-----------------------------------------------------------------------------
Q psy2392 141 --A----------------------------------------------------------------------------- 141 (1165)
Q Consensus 141 --~----------------------------------------------------------------------------- 141 (1165)
.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (852)
T TIGR03346 443 LAELEEEYADLEEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPR 522 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccc
Confidence 0
Q ss_pred ccccchhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcE
Q psy2392 142 IGSGGIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKN 220 (1165)
Q Consensus 142 ~~~~~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~ 220 (1165)
+....+....++.++++|||+|...+..++ .++.++++.|++.|+||+.|++.+..++... +.|+..+.+|. ++
T Consensus 523 l~~~~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--~~gl~~~~~p~---~~ 597 (852)
T TIGR03346 523 LLREEVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--RAGLSDPNRPI---GS 597 (852)
T ss_pred cccCCcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--hccCCCCCCCC---eE
Confidence 000113334677889999999998877654 7789999999999999999999999999876 77877776664 79
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHH
Q psy2392 221 ILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINK 286 (1165)
Q Consensus 221 ~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~ 286 (1165)
+||+||||||||++|++||+.+ +.+++++||++|.+ |||+|++.++.+++.+
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v-------------- 663 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAV-------------- 663 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHHH--------------
Confidence 9999999999999999999988 57899999998754 3444444333222221
Q ss_pred HHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHh
Q psy2392 287 VRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMT 366 (1165)
Q Consensus 287 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 366 (1165)
T Consensus 664 -------------------------------------------------------------------------------- 663 (852)
T TIGR03346 664 -------------------------------------------------------------------------------- 663 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchh
Q psy2392 367 AQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRA 446 (1165)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~ 446 (1165)
.. .+++|||||||+|+++.
T Consensus 664 ------------------------------------------------~~-~p~~vlllDeieka~~~------------ 682 (852)
T TIGR03346 664 ------------------------------------------------RR-KPYSVVLFDEVEKAHPD------------ 682 (852)
T ss_pred ------------------------------------------------Hc-CCCcEEEEeccccCCHH------------
Confidence 11 26789999999999877
Q ss_pred hhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC---C------------------CCCCchhhhCCCCeeEecC
Q psy2392 447 GVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---K------------------PSDLIPELQGRFPIRVELD 504 (1165)
Q Consensus 447 ~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~---~------------------p~~l~pel~~R~~~~v~~~ 504 (1165)
+|+.||+++|.+.++...| .++.+|.+||+|++.... + -..|.|||.+||+.+|.|.
T Consensus 683 -v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~ 761 (852)
T TIGR03346 683 -VFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFH 761 (852)
T ss_pred -HHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecC
Confidence 8889999998777665444 688899999999776321 1 1238899999999999999
Q ss_pred CCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 505 SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 505 ~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
||+.+++.+|+. ..+....+.+...|+.+.++++++++|++.+|+ +.+|||.|+++|++.+.+...
T Consensus 762 PL~~e~l~~I~~----l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~-----~~~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 762 PLGREQIARIVE----IQLGRLRKRLAERKITLELSDAALDFLAEAGYD-----PVYGARPLKRAIQREIENPLA 827 (852)
T ss_pred CcCHHHHHHHHH----HHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCC-----CCCCchhHHHHHHHHHHHHHH
Confidence 999999999994 445555566677899999999999999999887 579999999999999876543
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=428.62 Aligned_cols=290 Identities=37% Similarity=0.638 Sum_probs=256.7
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCC-CCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~-~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..+|.++.+.|++.|+||+.||+.++.+++++|+|...... .-.....+++||.||||||||.||+.||+.++.||..-
T Consensus 49 lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 49 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred CCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 36899999999999999999999999999999999754432 22334468999999999999999999999999999999
Q ss_pred eccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHH
Q psy2392 250 EATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIF 329 (1165)
Q Consensus 250 d~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1165)
|++.+++.||+|++.++.+.+|++.+-
T Consensus 129 DATtLTEAGYVGEDVENillkLlqaad----------------------------------------------------- 155 (408)
T COG1219 129 DATTLTEAGYVGEDVENILLKLLQAAD----------------------------------------------------- 155 (408)
T ss_pred cccchhhccccchhHHHHHHHHHHHcc-----------------------------------------------------
Confidence 999999999999999999988887730
Q ss_pred HHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHH
Q psy2392 330 RKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEI 409 (1165)
Q Consensus 330 ~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1165)
|+
T Consensus 156 ------------------------yd------------------------------------------------------ 157 (408)
T COG1219 156 ------------------------YD------------------------------------------------------ 157 (408)
T ss_pred ------------------------cC------------------------------------------------------
Confidence 00
Q ss_pred HHHHHhhhccceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeee-----------ceeecCceEEEEE
Q psy2392 410 QQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTK-----------YGIIKTDHILFIA 477 (1165)
Q Consensus 410 ~~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~-----------~~~~~t~~ilfI~ 477 (1165)
+..| +.|||+|||||||+..+++.+ ++|+|+||||++||.++||++++.. +..++|+||||||
T Consensus 158 ----V~rA-erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIc 232 (408)
T COG1219 158 ----VERA-ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFIC 232 (408)
T ss_pred ----HHHH-hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEe
Confidence 1112 789999999999999988766 7999999999999999999988762 4589999999999
Q ss_pred eCCccc-----------------------------------CCCCC-----CchhhhCCCCeeEecCCCCHHHHHHHHhh
Q psy2392 478 SGAFHL-----------------------------------AKPSD-----LIPELQGRFPIRVELDSLSISDFTRIMTS 517 (1165)
Q Consensus 478 ~gaf~~-----------------------------------~~p~~-----l~pel~~R~~~~v~~~~L~~~~l~~Il~~ 517 (1165)
.|||.. ..|.| |+|||.||+|++..+.+|++++|.+||++
T Consensus 233 gGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILte 312 (408)
T COG1219 233 GGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTE 312 (408)
T ss_pred ccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhc
Confidence 999971 01323 89999999999999999999999999999
Q ss_pred hhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEccccc
Q psy2392 518 TNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYV 593 (1165)
Q Consensus 518 ~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~v 593 (1165)
|++++.+||+++++.+|++|.|+++|++.||+.|.. ...|||.|+.++|.++.+++|+.|... +.||.+.|
T Consensus 313 PkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~-----rkTGARGLRsI~E~~lld~MfelPs~~~v~~v~I~~~~v 387 (408)
T COG1219 313 PKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIE-----RKTGARGLRSIIEELLLDVMFELPSLEDVEKVVITEEVV 387 (408)
T ss_pred ccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHH-----hccchhHHHHHHHHHHHHHHhhCCCCCCceEEEEeHHHh
Confidence 999999999999999999999999999999999998 589999999999999999999999875 89999999
Q ss_pred ccccccCc
Q psy2392 594 NSRLGDLS 601 (1165)
Q Consensus 594 ~~~~~~~~ 601 (1165)
.....+.+
T Consensus 388 ~~~~~p~l 395 (408)
T COG1219 388 DGNAEPLL 395 (408)
T ss_pred CCCCCCeE
Confidence 87666554
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=496.77 Aligned_cols=396 Identities=23% Similarity=0.336 Sum_probs=311.8
Q ss_pred CccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHH
Q psy2392 8 SSAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLE 85 (1165)
Q Consensus 8 ~~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE 85 (1165)
.+++.+ -+.||++|+| +|+||+|+||||||++||++||++|+||.|| || .|. |.||+.++++.||++++++||
T Consensus 284 ~~~~~~-~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rR--f~-~i~-v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 284 VGAGKA-DGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERR--FQ-KVF-VAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred ccCCCC-ccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhh--CC-EEE-eCCCCHHHHHHHHHHHhhhhc
Confidence 455543 3468999999 9999999999999999999999999999999 99 677 999999999999999999999
Q ss_pred HHhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhhhccCCCCccCc----------------c------
Q psy2392 86 KHQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEP----------------E------ 136 (1165)
Q Consensus 86 ~~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~~~~~~~~~~~~----------------e------ 136 (1165)
.||+ +++.+++.||+||+++|+||||| ++|++|+..++...+.+.....+ +
T Consensus 359 ~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~ 438 (857)
T PRK10865 359 LHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASK 438 (857)
T ss_pred cCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 9997 99999999999999999999986 48999999876422111100000 0
Q ss_pred -------cc-------c-----------cccc------------------------------------------------
Q psy2392 137 -------NG-------I-----------GAIG------------------------------------------------ 143 (1165)
Q Consensus 137 -------~~-------~-----------~~~~------------------------------------------------ 143 (1165)
.. . ..++
T Consensus 439 ~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (857)
T PRK10865 439 KRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQ 518 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHh
Confidence 00 0 0000
Q ss_pred ---------ccchhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCC
Q psy2392 144 ---------SGGIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQ 213 (1165)
Q Consensus 144 ---------~~~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~ 213 (1165)
...+....+|.++++|||+|...+..+. .++..+++.|.+.|+||+.|+..|..++... +.|+..+.+
T Consensus 519 ~~~~~~~~~~~~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--~~gl~~~~~ 596 (857)
T PRK10865 519 LEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--RAGLSDPNR 596 (857)
T ss_pred hhccccccccCccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--HhcccCCCC
Confidence 0112334678889999999999987754 7889999999999999999999999999876 777777666
Q ss_pred CccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhh
Q psy2392 214 QEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQT 279 (1165)
Q Consensus 214 ~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~ 279 (1165)
|. +++||+||||||||++|++||+.+ +.+|++++|++|.+ |||+|++.++.++
T Consensus 597 p~---~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~---------- 663 (857)
T PRK10865 597 PI---GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLT---------- 663 (857)
T ss_pred CC---ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHH----------
Confidence 64 789999999999999999999988 46899999998753 1222222111111
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCC
Q psy2392 280 REFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSP 359 (1165)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~ 359 (1165)
T Consensus 664 -------------------------------------------------------------------------------- 663 (857)
T PRK10865 664 -------------------------------------------------------------------------------- 663 (857)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCC
Q psy2392 360 PGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN 439 (1165)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~ 439 (1165)
+++.. .++++||||||+++++.
T Consensus 664 ----------------------------------------------------~~v~~-~p~~vLllDEieka~~~----- 685 (857)
T PRK10865 664 ----------------------------------------------------EAVRR-RPYSVILLDEVEKAHPD----- 685 (857)
T ss_pred ----------------------------------------------------HHHHh-CCCCeEEEeehhhCCHH-----
Confidence 11111 26789999999999866
Q ss_pred CCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC---------------------CCCCCchhhhCCC
Q psy2392 440 NTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---------------------KPSDLIPELQGRF 497 (1165)
Q Consensus 440 ~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~---------------------~p~~l~pel~~R~ 497 (1165)
+|+.||+++|.+.++...| .++.+|.+||++.++... .-..|.|||++|+
T Consensus 686 --------v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRl 757 (857)
T PRK10865 686 --------VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRI 757 (857)
T ss_pred --------HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhC
Confidence 7889999998766554333 678899999998776311 0134899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+.+|.|.||+.+++.+|+. ..+.+....++..|+.+.++++++++|++.+|+ +.+|||+|+++|++.+++.
T Consensus 758 d~iivF~PL~~edl~~Iv~----~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~-----~~~GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 758 DEVVVFHPLGEQHIASIAQ----IQLQRLYKRLEERGYEIHISDEALKLLSENGYD-----PVYGARPLKRAIQQQIENP 828 (857)
T ss_pred CeeEecCCCCHHHHHHHHH----HHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCC-----ccCChHHHHHHHHHHHHHH
Confidence 9999999999999999994 455555455567789999999999999999988 5899999999999998775
Q ss_pred h
Q psy2392 578 S 578 (1165)
Q Consensus 578 ~ 578 (1165)
.
T Consensus 829 l 829 (857)
T PRK10865 829 L 829 (857)
T ss_pred H
Confidence 3
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=485.40 Aligned_cols=376 Identities=22% Similarity=0.307 Sum_probs=278.4
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAK 698 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ 698 (1165)
|+||+++||||||+.||++||++|+|+.|| || .|. +.||+.++++.||++++++||.||+ +++.+++.+|+
T Consensus 303 l~~g~l~~IgaTt~~e~r~~~~~d~al~rR--f~-~i~-v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ 378 (857)
T PRK10865 303 LARGELHCVGATTLDEYRQYIEKDAALERR--FQ-KVF-VAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSH 378 (857)
T ss_pred hhcCCCeEEEcCCCHHHHHHhhhcHHHHhh--CC-EEE-eCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhh
Confidence 568999999999999999999999999999 99 777 9999999999999999999999997 89999999999
Q ss_pred HHhcccccchHH--HHhhhhhhhhhhhhcCCCCc----------------------cC---------------------c
Q psy2392 699 EWRNDRTLRRLE--AMLLTANRETTLIITGNGDV----------------------LE---------------------P 733 (1165)
Q Consensus 699 ryi~~R~lPDkd--lid~a~a~~~~~~~s~~~~~----------------------~~---------------------~ 733 (1165)
||+++|+||||+ ++|.+++..+....+.+... .. .
T Consensus 379 ry~~~~~~pdkAi~LiD~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L 458 (857)
T PRK10865 379 RYIADRQLPDKAIDLIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSEL 458 (857)
T ss_pred ccccCCCCChHHHHHHHHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 47777766543211100000 00 0
Q ss_pred ccccc-------------------------------------------------------------ccccccccHHHHHH
Q psy2392 734 ENGIG-------------------------------------------------------------AIGSGGIFAQSAAK 752 (1165)
Q Consensus 734 ~~~i~-------------------------------------------------------------~i~~~~~~~~~~a~ 752 (1165)
...+. ..-...+....+|.
T Consensus 459 ~eq~k~~k~el~~~~~~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~ 538 (857)
T PRK10865 459 EEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGKTMRLLRNKVTDAEIAE 538 (857)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhccccccccCccCHHHHHH
Confidence 00000 00002255567889
Q ss_pred HhhhccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhH
Q psy2392 753 ALQENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 831 (1165)
Q Consensus 753 ~l~~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~ 831 (1165)
++++||++|...+.. +..++..+++.|.+.|+||+.+++.+..++... +.|+..+.+| .+.+||+||||||||+
T Consensus 539 vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~--~~gl~~~~~p---~~~~Lf~Gp~G~GKT~ 613 (857)
T PRK10865 539 VLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRS--RAGLSDPNRP---IGSFLFLGPTGVGKTE 613 (857)
T ss_pred HHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHH--HhcccCCCCC---CceEEEECCCCCCHHH
Confidence 999999999988754 677889999999999999999999999999865 6666665544 3689999999999999
Q ss_pred HHHHHHHHc---CCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccC
Q psy2392 832 IARRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKS 908 (1165)
Q Consensus 832 lAk~lA~~l---~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~ 908 (1165)
+|++||+.+ +.+|+.++|++|.+. ..+..+++..
T Consensus 614 lA~aLa~~l~~~~~~~i~id~se~~~~--------~~~~~LiG~~----------------------------------- 650 (857)
T PRK10865 614 LCKALANFMFDSDDAMVRIDMSEFMEK--------HSVSRLVGAP----------------------------------- 650 (857)
T ss_pred HHHHHHHHhhcCCCcEEEEEhHHhhhh--------hhHHHHhCCC-----------------------------------
Confidence 999999987 467999999987532 1122221000
Q ss_pred CCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHH
Q psy2392 909 NLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIRE 988 (1165)
Q Consensus 909 ~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~ 988 (1165)
++ + . |.++..
T Consensus 651 --pg-y-----------------------------------~--------g~~~~g------------------------ 660 (857)
T PRK10865 651 --PG-Y-----------------------------------V--------GYEEGG------------------------ 660 (857)
T ss_pred --Cc-c-----------------------------------c--------ccchhH------------------------
Confidence 00 0 0 000000
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-ecc
Q psy2392 989 AIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIK 1067 (1165)
Q Consensus 989 a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~ 1067 (1165)
.+ ..++. ..+.+++|||||||+... +|+.||+++|.+.+....| .++
T Consensus 661 -----------------~l-~~~v~-~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 661 -----------------YL-TEAVR-RRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred -----------------HH-HHHHH-hCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCceecCCceEEe
Confidence 00 01111 124689999999998765 9999999998765543223 577
Q ss_pred CceEEEEecCCCCCC---------------------CCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHH
Q psy2392 1068 TDHILFIASGAFHLA---------------------KPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEA 1126 (1165)
Q Consensus 1068 t~~ilfI~~gaf~~~---------------------~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~ 1126 (1165)
..|.+||++..+... .-..|.|||.+|++..+.|.||+.+++.+|++ ..+.+...
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~----~~L~~l~~ 784 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQ----IQLQRLYK 784 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHH----HHHHHHHH
Confidence 788888888766311 01348899999999999999999999999999 55555544
Q ss_pred HHhhcCCceEeCHHHHHHHHHHHhccCcCCc
Q psy2392 1127 LLATEGIKIEFVDDGIQRLAEIAYCINERTE 1157 (1165)
Q Consensus 1127 l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ 1157 (1165)
.++..|+.+.+++++++.|+..+|+.+.||+
T Consensus 785 rl~~~gi~l~is~~al~~L~~~gy~~~~GAR 815 (857)
T PRK10865 785 RLEERGYEIHISDEALKLLSENGYDPVYGAR 815 (857)
T ss_pred HHHhCCCcCcCCHHHHHHHHHcCCCccCChH
Confidence 4566789999999999999999999844443
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=424.60 Aligned_cols=259 Identities=38% Similarity=0.656 Sum_probs=227.1
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCC-CCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~-~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+--+|.++++.|+++|+||+.||+.+..++++||+|...... .-....+.|+||+||+|||||.||+.||+.++.||-.
T Consensus 48 ~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFai 127 (408)
T COG1219 48 ELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAI 127 (408)
T ss_pred cCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 346799999999999999999999999999999999865432 2233456899999999999999999999999999999
Q ss_pred EecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHH
Q psy2392 847 IEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQI 926 (1165)
Q Consensus 847 l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~ 926 (1165)
.|++.+++.||||++.++.+.+|+..|
T Consensus 128 ADATtLTEAGYVGEDVENillkLlqaa----------------------------------------------------- 154 (408)
T COG1219 128 ADATTLTEAGYVGEDVENILLKLLQAA----------------------------------------------------- 154 (408)
T ss_pred ccccchhhccccchhHHHHHHHHHHHc-----------------------------------------------------
Confidence 999999999999999998887775444
Q ss_pred HHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 1006 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~ 1006 (1165)
.+ +
T Consensus 155 --------dy---------------------------------------------------------------------d 157 (408)
T COG1219 155 --------DY---------------------------------------------------------------------D 157 (408)
T ss_pred --------cc---------------------------------------------------------------------C
Confidence 00 1
Q ss_pred HHHHHHHhhhcCCeeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCcccee-----------eeeeccCceEEEE
Q psy2392 1007 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFI 1074 (1165)
Q Consensus 1007 ~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~-----------k~~~~~t~~ilfI 1074 (1165)
| ++| +.|||||||||||++.+++.|. .|+|+||||++||+++|||.++. .|..++|.|||||
T Consensus 158 V-~rA-----erGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFI 231 (408)
T COG1219 158 V-ERA-----ERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFI 231 (408)
T ss_pred H-HHH-----hCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEE
Confidence 2 444 7999999999999999887654 89999999999999999998876 2568999999999
Q ss_pred ecCCCCC-----------------------------------CCCCC-----CchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1075 ASGAFHL-----------------------------------AKPSD-----LIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1075 ~~gaf~~-----------------------------------~~p~d-----l~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|.|||.- -.|.| |||||.||+|+...|.+|++++|.+||+
T Consensus 232 cgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILt 311 (408)
T COG1219 232 CGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILT 311 (408)
T ss_pred eccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHh
Confidence 9999971 11333 7899999999999999999999999999
Q ss_pred hhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeecc
Q psy2392 1115 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVII 1162 (1165)
Q Consensus 1115 ~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar 1162 (1165)
+|+|++.+||+++|+.+||+|.|+++|+++||+.|.+..|||+-..+.
T Consensus 312 ePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI 359 (408)
T COG1219 312 EPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSI 359 (408)
T ss_pred cccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHH
Confidence 999999999999999999999999999999999999998888765443
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-47 Score=479.47 Aligned_cols=365 Identities=22% Similarity=0.329 Sum_probs=282.6
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAK 698 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ 698 (1165)
|+||+++||||||..||++||++|+|+.|| |+ +|. +.+|+.+++..||++++.+|+.||+ +++.+|+.||+
T Consensus 298 l~~g~i~~IgaTt~~e~r~~~~~d~al~rR--f~-~i~-v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~ 373 (852)
T TIGR03346 298 LARGELHCIGATTLDEYRKYIEKDAALERR--FQ-PVF-VDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSH 373 (852)
T ss_pred hhcCceEEEEeCcHHHHHHHhhcCHHHHhc--CC-EEE-eCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999999999999 99 676 9999999999999999999999999 89999999999
Q ss_pred HHhcccccchHH--HHhhhhhhhhhhhhcCCCCccCccc-----------------------------c-----------
Q psy2392 699 EWRNDRTLRRLE--AMLLTANRETTLIITGNGDVLEPEN-----------------------------G----------- 736 (1165)
Q Consensus 699 ryi~~R~lPDkd--lid~a~a~~~~~~~s~~~~~~~~~~-----------------------------~----------- 736 (1165)
||+++|+||||+ ++|++|+..+....+.+......+. .
T Consensus 374 ~yi~~r~lPdkAidlld~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (852)
T TIGR03346 374 RYITDRFLPDKAIDLIDEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADL 453 (852)
T ss_pred ccccccCCchHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999965 5889998766531111100000000 0
Q ss_pred ------------------------------------------------------c------------cccccccccHHHH
Q psy2392 737 ------------------------------------------------------I------------GAIGSGGIFAQSA 750 (1165)
Q Consensus 737 ------------------------------------------------------i------------~~i~~~~~~~~~~ 750 (1165)
+ ..+....+....+
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~i 533 (852)
T TIGR03346 454 EEQWKAEKAAIQGIQQIKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEETKPRLLREEVTAEEI 533 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhccccccccCCcCHHHH
Confidence 0 0001123555678
Q ss_pred HHHhhhccCCChHHHH-HhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCCh
Q psy2392 751 AKALQENTELMPDEII-KKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGK 829 (1165)
Q Consensus 751 a~~l~~~t~~~~~~i~-~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GK 829 (1165)
+.+++.||++|...+. .+..+..++.+.|++.|+||+.|++.+..++... +.|+..+.+| .+.+||+|||||||
T Consensus 534 ~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~--~~gl~~~~~p---~~~~Lf~Gp~GvGK 608 (852)
T TIGR03346 534 AEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRS--RAGLSDPNRP---IGSFLFLGPTGVGK 608 (852)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHH--hccCCCCCCC---CeEEEEEcCCCCCH
Confidence 8889999998887764 4677889999999999999999999999999866 6677666554 47899999999999
Q ss_pred hHHHHHHHHHc---CCCeEEEecCCcccc-----------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHH
Q psy2392 830 TEIARRLAKLS---NAPFIKIEATKFTEV-----------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 895 (1165)
Q Consensus 830 T~lAk~lA~~l---~~~fi~l~~se~~~~-----------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~ 895 (1165)
|++|+++|+.+ +.+|+++||++|.+. ||+|++.++.+++.
T Consensus 609 t~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~-------------------------- 662 (852)
T TIGR03346 609 TELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEA-------------------------- 662 (852)
T ss_pred HHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHHHHH--------------------------
Confidence 99999999988 478999999997542 33333322211110
Q ss_pred HHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhC
Q psy2392 896 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 975 (1165)
Q Consensus 896 ~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1165)
T Consensus 663 -------------------------------------------------------------------------------- 662 (852)
T TIGR03346 663 -------------------------------------------------------------------------------- 662 (852)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcccccc
Q psy2392 976 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 1055 (1165)
Q Consensus 976 ~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~E 1055 (1165)
+. .....|||+|||||+... +|+.||.++|
T Consensus 663 ------------------------------------v~-~~p~~vlllDeieka~~~-------------v~~~Ll~~l~ 692 (852)
T TIGR03346 663 ------------------------------------VR-RKPYSVVLFDEVEKAHPD-------------VFNVLLQVLD 692 (852)
T ss_pred ------------------------------------HH-cCCCcEEEEeccccCCHH-------------HHHHHHHHHh
Confidence 00 014569999999999765 9999999998
Q ss_pred Cccceeeee-eccCceEEEEecCCCCCC---C------------------CCCCchhhhccCCeEEEcCCCCHHHHHHHH
Q psy2392 1056 GTTVNTKYG-IIKTDHILFIASGAFHLA---K------------------PSDLIPELQGRFPIRVELDSLSISDFTRIM 1113 (1165)
Q Consensus 1056 g~~v~~k~~-~~~t~~ilfI~~gaf~~~---~------------------p~dl~pel~gR~~i~v~l~~l~~~~l~~il 1113 (1165)
.+.++...| .++..|.+||++...-.. + -..|.|||.+||..++.|.||+.+++.+|+
T Consensus 693 ~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~ 772 (852)
T TIGR03346 693 DGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIV 772 (852)
T ss_pred cCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHH
Confidence 776654334 577888899998775221 1 123789999999999999999999999999
Q ss_pred hhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCc
Q psy2392 1114 TSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTE 1157 (1165)
Q Consensus 1114 ~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ 1157 (1165)
. ..+......++..|+.+.|+++++++|++..|+...+++
T Consensus 773 ~----l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR 812 (852)
T TIGR03346 773 E----IQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGAR 812 (852)
T ss_pred H----HHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCch
Confidence 9 455555566677899999999999999999997744443
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=425.61 Aligned_cols=488 Identities=23% Similarity=0.355 Sum_probs=326.4
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.+.....+++.+.. ++++.....++.. +|.++|||||||||||.||+++|.+++.||+.+++.++++ ||.|+
T Consensus 190 ~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~-PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS-GvSGE 266 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIH-IKHPEVFSSLGVR-PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS-GVSGE 266 (802)
T ss_pred hhccChHHHHHHHHHHHHH-hcCchhHhhcCCC-CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc-ccCcc
Confidence 3889999999999998765 5666555444432 4689999999999999999999999999999999999998 89999
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++++|+++
T Consensus 267 S-EkkiRelF~~A------------------------------------------------------------------- 278 (802)
T KOG0733|consen 267 S-EKKIRELFDQA------------------------------------------------------------------- 278 (802)
T ss_pred c-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 9 55699999884
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.+. .++|
T Consensus 279 -----------------------------------------------------------------------~~~--aPci 285 (802)
T KOG0733|consen 279 -----------------------------------------------------------------------KSN--APCI 285 (802)
T ss_pred -----------------------------------------------------------------------hcc--CCeE
Confidence 111 3899
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
|||||||.|+++++. .+.+.++.-| .+||..||+-... .-+++.+++|+++ ++|..+.|+|+ |||+..
T Consensus 286 vFiDeIDAI~pkRe~-aqreMErRiV-aQLlt~mD~l~~~----~~~g~~VlVIgAT----nRPDslDpaLRRaGRFdrE 355 (802)
T KOG0733|consen 286 VFIDEIDAITPKREE-AQREMERRIV-AQLLTSMDELSNE----KTKGDPVLVIGAT----NRPDSLDPALRRAGRFDRE 355 (802)
T ss_pred EEeecccccccchhh-HHHHHHHHHH-HHHHHhhhccccc----ccCCCCeEEEecC----CCCcccCHHHhccccccce
Confidence 999999999999886 4556666544 4689999874322 1135679999984 79999999998 899999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHH--------HHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTA--------MEK 572 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~--------ie~ 572 (1165)
|.+.-+++....+||. .+.+ |+.+.- +=..+.||+.... ..||. |..+ |.+
T Consensus 356 I~l~vP~e~aR~~IL~----~~~~---------~lrl~g-~~d~~qlA~lTPG------fVGAD-L~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 356 ICLGVPSETAREEILR----IICR---------GLRLSG-DFDFKQLAKLTPG------FVGAD-LMALCREAAFVAIKR 414 (802)
T ss_pred eeecCCchHHHHHHHH----HHHh---------hCCCCC-CcCHHHHHhcCCC------ccchh-HHHHHHHHHHHHHHH
Confidence 9999999999999994 2222 222211 1124566666644 35664 2222 222
Q ss_pred HHHHhhcccCCCeeEEcccccccccccCcccccccccccccccccCcceeeeecCCcccccCCccccccccccCcchHHH
Q psy2392 573 LLEEVSFNSNNISLLVDADYVNSRLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKV 652 (1165)
Q Consensus 573 ~l~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~dls~~i~~~~~~~gt~~~aLaRG~l~~IGATT~~Eyr~~IekD~Al~R 652 (1165)
++.+.+. |. .......|.+. +. +.++-.+|..|...+-. .+-|.-..+
T Consensus 415 ~ld~~~~--p~--------------~~~~~~ed~~~--~~------------~~~d~S~i~~~~~~~~~--~~ld~v~~~ 462 (802)
T KOG0733|consen 415 ILDQSSS--PL--------------TKVPISEDSSN--KD------------AEEDQSSIKITSNAERP--LELDRVVQD 462 (802)
T ss_pred HhhcccC--cc--------------ccCCccccccC--CC------------ccchhhhhhcCCccccc--ccHHHHHHH
Confidence 2211110 00 01111111110 00 00111233333222211 001100000
Q ss_pred HhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccchHHHHhhhhhhhhhhhhcCCCCccC
Q psy2392 653 RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLE 732 (1165)
Q Consensus 653 R~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~~aL~aav~LS~ryi~~R~lPDkdlid~a~a~~~~~~~s~~~~~~~ 732 (1165)
- +-+ ..+.+|.+ .+.+|.-.|++|
T Consensus 463 ~-i~~----~~d~~S~E----~~~~L~i~~eDF----------------------------------------------- 486 (802)
T KOG0733|consen 463 A-ILN----NPDPLSKE----LLEGLSIKFEDF----------------------------------------------- 486 (802)
T ss_pred H-HHh----CCCCcChH----HhccceecHHHH-----------------------------------------------
Confidence 0 000 01112211 112222222222
Q ss_pred ccccccccccccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCC
Q psy2392 733 PENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ 812 (1165)
Q Consensus 733 ~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~ 812 (1165)
..++....+.+ .+....+++..-|++|.|++++..++..+|..++|+..+......
T Consensus 487 ----~~Al~~iQPSa--------------------kREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi 542 (802)
T KOG0733|consen 487 ----EEALSKIQPSA--------------------KREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI 542 (802)
T ss_pred ----HHHHHhcCcch--------------------hcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC
Confidence 11111111111 133333445556899999999999999999987766555443322
Q ss_pred CCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHH
Q psy2392 813 EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDA 892 (1165)
Q Consensus 813 ~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~ 892 (1165)
. .|.++|||||||||||.|||++|++.+.+|+.+-++++.++ |||++ +..+|.+|.+|+..
T Consensus 543 ~-~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNk-YVGES-ErAVR~vFqRAR~s---------------- 603 (802)
T KOG0733|consen 543 D-APSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNK-YVGES-ERAVRQVFQRARAS---------------- 603 (802)
T ss_pred C-CCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHH-HhhhH-HHHHHHHHHHhhcC----------------
Confidence 1 27999999999999999999999999999999999999999 99999 57799998877333
Q ss_pred HHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHH
Q psy2392 893 AEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFS 972 (1165)
Q Consensus 893 a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 972 (1165)
T Consensus 604 -------------------------------------------------------------------------------- 603 (802)
T KOG0733|consen 604 -------------------------------------------------------------------------------- 603 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccc
Q psy2392 973 VIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLP 1052 (1165)
Q Consensus 973 ~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~ 1052 (1165)
.++|||+||||.++..++... +. ++.-|-+.||.
T Consensus 604 --------------------------------------------aPCVIFFDEiDaL~p~R~~~~-s~-~s~RvvNqLLt 637 (802)
T KOG0733|consen 604 --------------------------------------------APCVIFFDEIDALVPRRSDEG-SS-VSSRVVNQLLT 637 (802)
T ss_pred --------------------------------------------CCeEEEecchhhcCcccCCCC-ch-hHHHHHHHHHH
Confidence 567999999999999876422 22 33347888999
Q ss_pred cccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1053 LVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1053 ~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
-|+| .-.-..+++|+|+ ++|.-+.|+++ |||.-......+..+|...||+
T Consensus 638 ElDG--------l~~R~gV~viaAT----NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK 689 (802)
T KOG0733|consen 638 ELDG--------LEERRGVYVIAAT----NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILK 689 (802)
T ss_pred Hhcc--------cccccceEEEeec----CCCcccchhhcCCCccCceeeecCCCHHHHHHHHH
Confidence 9986 3345567888886 58988889998 8999999999999999999999
|
|
| >KOG0745|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-45 Score=405.16 Aligned_cols=284 Identities=38% Similarity=0.640 Sum_probs=245.7
Q ss_pred hhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhccc------------C----CCC--------------------
Q psy2392 170 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT------------G----PLQ-------------------- 213 (1165)
Q Consensus 170 ~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~------------~----~~~-------------------- 213 (1165)
...+|+++.++|++.|+||+.||+.|..+++++|+|..-+ . ...
T Consensus 132 ~~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~ 211 (564)
T KOG0745|consen 132 PPPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQI 211 (564)
T ss_pred CCCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchh
Confidence 3478999999999999999999999999999998874210 0 000
Q ss_pred ----------CccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHH
Q psy2392 214 ----------QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFE 283 (1165)
Q Consensus 214 ----------~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~ 283 (1165)
......++||.||+|+|||.||+.||+.++.||...||+.+++.||+|++.+..+..|+..+.
T Consensus 212 ~~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~------- 284 (564)
T KOG0745|consen 212 AKALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAE------- 284 (564)
T ss_pred cccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHcc-------
Confidence 001147899999999999999999999999999999999999999999999998888887730
Q ss_pred HHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchh
Q psy2392 284 INKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGME 363 (1165)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~ 363 (1165)
|
T Consensus 285 ----------------------------------------------------------------------~--------- 285 (564)
T KOG0745|consen 285 ----------------------------------------------------------------------Y--------- 285 (564)
T ss_pred ----------------------------------------------------------------------C---------
Confidence 0
Q ss_pred HHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCC-CCc
Q psy2392 364 EMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTD 442 (1165)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~ 442 (1165)
+ ++.| +.|||||||+|||+++..+-+ .+|
T Consensus 286 --------------------------------------------n-----VekA-QqGIVflDEvDKi~~~~~~i~~~RD 315 (564)
T KOG0745|consen 286 --------------------------------------------N-----VEKA-QQGIVFLDEVDKITKKAESIHTSRD 315 (564)
T ss_pred --------------------------------------------C-----HHHH-hcCeEEEehhhhhcccCcccccccc
Confidence 0 1112 789999999999998876644 579
Q ss_pred cchhhhhhhhcccccCceeeee-----------ceeecCceEEEEEeCCccc--------------------C-------
Q psy2392 443 ISRAGVQRDLLPLVEGTTVNTK-----------YGIIKTDHILFIASGAFHL--------------------A------- 484 (1165)
Q Consensus 443 ~~~~~vq~~lL~~~Eg~~v~~~-----------~~~~~t~~ilfI~~gaf~~--------------------~------- 484 (1165)
+|+||||+.||.++||+.|+.. ...++|.||||||+|||.. +
T Consensus 316 VsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~ 395 (564)
T KOG0745|consen 316 VSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANM 395 (564)
T ss_pred ccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhc
Confidence 9999999999999999999871 2389999999999999971 0
Q ss_pred --------------------CCCC-----CchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEe
Q psy2392 485 --------------------KPSD-----LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEF 539 (1165)
Q Consensus 485 --------------------~p~~-----l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~ 539 (1165)
.+.| ++|||.||||++|.|.+|++++|.+||++|+++|++||++++...+++|.|
T Consensus 396 ~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~f 475 (564)
T KOG0745|consen 396 ATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHF 475 (564)
T ss_pred ccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEe
Confidence 0111 889999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe---eEEcccccc
Q psy2392 540 VDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDADYVN 594 (1165)
Q Consensus 540 ~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~---~~i~~~~v~ 594 (1165)
+++|++.||+.|.. .+.|||.|+.++|++|.+.+|+.|.-. |.||.+.|.
T Consensus 476 Te~Al~~IAq~Al~-----r~TGARgLRsIlE~~LleamfevPGSdI~~V~Vdee~v~ 528 (564)
T KOG0745|consen 476 TEKALEAIAQLALK-----RKTGARGLRSILESLLLEAMFEVPGSDIKAVLVDEEAVK 528 (564)
T ss_pred cHHHHHHHHHHHHh-----hccchHHHHHHHHHHHhhhcccCCCCceEEEEecHHHhc
Confidence 99999999999988 689999999999999999999999766 788988886
|
|
| >KOG1051|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-45 Score=449.58 Aligned_cols=387 Identities=21% Similarity=0.272 Sum_probs=318.4
Q ss_pred ccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh-----
Q psy2392 17 KFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG----- 89 (1165)
Q Consensus 17 ~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~----- 89 (1165)
.||+.|+| +|+||+|.||||||.+||++||++||||+|| || .+. |++||.++|+.||+|++.+||-||+
T Consensus 301 ~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErr--w~-l~~-v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~ 376 (898)
T KOG1051|consen 301 AIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERR--WQ-LVL-VPIPSVENLSLILPGLSERYEVHHGVRISD 376 (898)
T ss_pred HHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhC--cc-eeE-eccCcccchhhhhhhhhhhhccccCCcccc
Confidence 78999999 9999999999999999999999999999999 99 787 9999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCccc-------ccccccc----------------
Q psy2392 90 NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPEN-------GIGAIGS---------------- 144 (1165)
Q Consensus 90 ~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~-------~~~~~~~---------------- 144 (1165)
.++..++.+|.+|++.|++||+ ++.|+||+..+....+-|+....++. .+..+..
T Consensus 377 ~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~ 456 (898)
T KOG1051|consen 377 ESLFSAAQLSARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLA 456 (898)
T ss_pred cccccccchhhhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhcccccccccc
Confidence 9999999999999999999997 55899999988633222211000000 0000000
Q ss_pred --------------------------------cc---------hh-------------------------hHHHHHHhhh
Q psy2392 145 --------------------------------GG---------IF-------------------------AQSAAKALQE 158 (1165)
Q Consensus 145 --------------------------------~~---------~~-------------------------~~~va~~l~~ 158 (1165)
.. ++ .-.+++..+.
T Consensus 457 ~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~ 536 (898)
T KOG1051|consen 457 PSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSR 536 (898)
T ss_pred ccccccccchhhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhh
Confidence 00 00 0044555678
Q ss_pred ccccCchhhhh-hhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHH
Q psy2392 159 NTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARR 237 (1165)
Q Consensus 159 ~t~l~~~~i~~-~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~ 237 (1165)
||++|...... +..+...|.+.|.+.|+||++|+.+|..+|... +.|+..+ .| ...|+|.||+|+|||.||++
T Consensus 537 ~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s--r~gl~~~-~~---~awflflGpdgvGKt~lAka 610 (898)
T KOG1051|consen 537 WTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS--RAGLKDP-NP---DAWFLFLGPDGVGKTELAKA 610 (898)
T ss_pred hcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh--hcccCCC-CC---CeEEEEECCCchhHHHHHHH
Confidence 88888877765 348899999999999999999999999999987 7777776 33 48999999999999999999
Q ss_pred HHHHh---CCCceEEecccccc--------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCC
Q psy2392 238 LAKLS---NAPFIKIEATKFTE--------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPS 306 (1165)
Q Consensus 238 lA~~l---~~~~i~ld~s~~~~--------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 306 (1165)
||+.+ ...|+++||++|++ |||+|+.+++.+++.++.
T Consensus 611 LA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lteavrr-------------------------------- 658 (898)
T KOG1051|consen 611 LAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKR-------------------------------- 658 (898)
T ss_pred HHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhc--------------------------------
Confidence 99999 57899999999665 799999988777766654
Q ss_pred CcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCcccccee
Q psy2392 307 KEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKI 386 (1165)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1165)
T Consensus 659 -------------------------------------------------------------------------------- 658 (898)
T KOG1051|consen 659 -------------------------------------------------------------------------------- 658 (898)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece
Q psy2392 387 KIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG 466 (1165)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~ 466 (1165)
.|++|||||||||.++. ||+-||+++|.+.++..+|
T Consensus 659 -------------------------------rP~sVVLfdeIEkAh~~-------------v~n~llq~lD~GrltDs~G 694 (898)
T KOG1051|consen 659 -------------------------------RPYSVVLFEEIEKAHPD-------------VLNILLQLLDRGRLTDSHG 694 (898)
T ss_pred -------------------------------CCceEEEEechhhcCHH-------------HHHHHHHHHhcCccccCCC
Confidence 27899999999999987 8889999999988888777
Q ss_pred -eecCceEEEEEeCCccc--------------------------------CCC----CCCchhhhCCCCeeEecCCCCHH
Q psy2392 467 -IIKTDHILFIASGAFHL--------------------------------AKP----SDLIPELQGRFPIRVELDSLSIS 509 (1165)
Q Consensus 467 -~~~t~~ilfI~~gaf~~--------------------------------~~p----~~l~pel~~R~~~~v~~~~L~~~ 509 (1165)
.|+..|++||+|.+... .-+ ..+.|||.+|++..+.|.+|+.+
T Consensus 695 r~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~ 774 (898)
T KOG1051|consen 695 REVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRD 774 (898)
T ss_pred cEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchh
Confidence 88999999999844310 002 56889999999999999999999
Q ss_pred HHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 510 DFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 510 ~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.+|+ ...+......++..++.+.+++.+.++++..+|+ +++|||++++.|++.+++..
T Consensus 775 ~~~~i~----~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d-----~~ygAr~ikr~i~~~~~~~l 834 (898)
T KOG1051|consen 775 ELIEIV----NKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYD-----FDYGARPIKRSIEERFENRL 834 (898)
T ss_pred hHhhhh----hhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcC-----hHHHhhHHHHHHHHHHHHHH
Confidence 999998 4555555555666678889999999999999999 58999999999998887654
|
|
| >KOG0745|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-44 Score=397.52 Aligned_cols=255 Identities=39% Similarity=0.667 Sum_probs=218.5
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCC-----------C---------------------------
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-----------L--------------------------- 810 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~-----------~--------------------------- 810 (1165)
.-+|+++.+.|+++|+||+.||+.|..+++++|+|..-+.. .
T Consensus 133 ~P~PkeI~~~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~ 212 (564)
T KOG0745|consen 133 PPTPKEICEYLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIA 212 (564)
T ss_pred CCChHHHHHHhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhc
Confidence 45789999999999999999999999999999987643100 0
Q ss_pred --------CCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHH
Q psy2392 811 --------QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEI 882 (1165)
Q Consensus 811 --------~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~ 882 (1165)
-....+.++||.||+|+|||.||+.||+.++.||...||+.+++.||||++.+..+.+|+..|-.
T Consensus 213 ~~ld~~~~dv~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~------- 285 (564)
T KOG0745|consen 213 KALDEDDEDVELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEY------- 285 (564)
T ss_pred ccccccccceeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccC-------
Confidence 00113479999999999999999999999999999999999999999999998888777554411
Q ss_pred HHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHH
Q psy2392 883 NKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEE 962 (1165)
Q Consensus 883 ~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~ 962 (1165)
T Consensus 286 -------------------------------------------------------------------------------- 285 (564)
T KOG0745|consen 286 -------------------------------------------------------------------------------- 285 (564)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCC-CCCCc
Q psy2392 963 MTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDI 1041 (1165)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~-~~~~~ 1041 (1165)
+| ++| |.|||||||+|||++..++- .+.|+
T Consensus 286 -------------------------------------------nV-ekA-----QqGIVflDEvDKi~~~~~~i~~~RDV 316 (564)
T KOG0745|consen 286 -------------------------------------------NV-EKA-----QQGIVFLDEVDKITKKAESIHTSRDV 316 (564)
T ss_pred -------------------------------------------CH-HHH-----hcCeEEEehhhhhcccCccccccccc
Confidence 12 344 88999999999999876653 44799
Q ss_pred cchhhhhhccccccCcccee--e---------eeeccCceEEEEecCCCCC-----------------------------
Q psy2392 1042 SRAGVQRDLLPLVEGTTVNT--K---------YGIIKTDHILFIASGAFHL----------------------------- 1081 (1165)
Q Consensus 1042 ~~~gvq~~lL~~~Eg~~v~~--k---------~~~~~t~~ilfI~~gaf~~----------------------------- 1081 (1165)
|+||||+.||+++||+.|+. | ...++|.||||||+|||.-
T Consensus 317 sGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~ 396 (564)
T KOG0745|consen 317 SGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMA 396 (564)
T ss_pred cchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcc
Confidence 99999999999999999986 2 2389999999999999971
Q ss_pred ------------------CCCCC-----CchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeC
Q psy2392 1082 ------------------AKPSD-----LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV 1138 (1165)
Q Consensus 1082 ------------------~~p~d-----l~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~ 1138 (1165)
..+.| |||||.|||||.|.|.+|++++|.+||+||.|+|++||+.+|+..+|+|.||
T Consensus 397 ~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf~~~nV~L~fT 476 (564)
T KOG0745|consen 397 TKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLFGMDNVELHFT 476 (564)
T ss_pred cccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHhccCCeeEEec
Confidence 01122 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCcCCcee
Q psy2392 1139 DDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1139 ~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
++|++.||+.|...+|||+-.
T Consensus 477 e~Al~~IAq~Al~r~TGARgL 497 (564)
T KOG0745|consen 477 EKALEAIAQLALKRKTGARGL 497 (564)
T ss_pred HHHHHHHHHHHHhhccchHHH
Confidence 999999999999997777643
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=377.13 Aligned_cols=286 Identities=37% Similarity=0.644 Sum_probs=240.9
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCC--CCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPL--QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~--~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
..+|.++.+.|++.|+||++|++.+..++.++|++....... .......++||+||||||||++|++||+.++.||++
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 478999999999999999999999999999887776332110 112234799999999999999999999999999999
Q ss_pred EeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHH
Q psy2392 249 IEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQI 328 (1165)
Q Consensus 249 ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1165)
++++.+..+||+|.+.+..++.++..+
T Consensus 139 id~~~l~~~gyvG~d~e~~l~~l~~~~----------------------------------------------------- 165 (412)
T PRK05342 139 ADATTLTEAGYVGEDVENILLKLLQAA----------------------------------------------------- 165 (412)
T ss_pred cchhhcccCCcccchHHHHHHHHHHhc-----------------------------------------------------
Confidence 999999999999998777665555431
Q ss_pred HHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhH
Q psy2392 329 FRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 408 (1165)
Q Consensus 329 ~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (1165)
.+.
T Consensus 166 ------~~~----------------------------------------------------------------------- 168 (412)
T PRK05342 166 ------DYD----------------------------------------------------------------------- 168 (412)
T ss_pred ------ccc-----------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHhhhccceEEEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeee-----------eceeecCceEEEE
Q psy2392 409 IQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFI 476 (1165)
Q Consensus 409 ~~~~a~~~~~~~~IifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~-----------~~~~~~t~~ilfI 476 (1165)
+.. .++|||||||||+++++..+. .+.|+|+++||+.||.+|||+.++. .+..++|+||+||
T Consensus 169 -----~~~-a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi 242 (412)
T PRK05342 169 -----VEK-AQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFI 242 (412)
T ss_pred -----HHH-cCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceee
Confidence 011 158999999999999885543 3689999999999999999987654 1347999999999
Q ss_pred EeCCccc------------------C---C--------------CC-----CCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 477 ASGAFHL------------------A---K--------------PS-----DLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 477 ~~gaf~~------------------~---~--------------p~-----~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+|||.. . + |. .|+|||+||+|.+|.|++|+++++.+|++
T Consensus 243 ~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 243 CGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred ecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHH
Confidence 9999862 0 0 11 17999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEcccc
Q psy2392 517 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADY 592 (1165)
Q Consensus 517 ~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~ 592 (1165)
++.+.+++|++++++.+|++|.|+++++++|++.||+ ..+|||+|+++|++.+.+.+|+.|... ++||+++
T Consensus 323 ~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~-----~~~GAR~Lrriie~~l~~~~~~~p~~~~~~~v~I~~~~ 397 (412)
T PRK05342 323 EPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIE-----RKTGARGLRSILEEILLDVMFELPSREDVEKVVITKEV 397 (412)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCC-----CCCCCchHHHHHHHHhHHHHHhccccCCCceEEECHHH
Confidence 9999999999999999999999999999999999988 589999999999999999999999752 8899999
Q ss_pred ccccc
Q psy2392 593 VNSRL 597 (1165)
Q Consensus 593 v~~~~ 597 (1165)
|....
T Consensus 398 v~~~~ 402 (412)
T PRK05342 398 VEGKA 402 (412)
T ss_pred hcccc
Confidence 97653
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=375.09 Aligned_cols=286 Identities=37% Similarity=0.625 Sum_probs=241.1
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhccc--CCCCC--ccCCcEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT--GPLQQ--EITPKNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~--~~~~~--~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
..+|.++.+.|++.|+||++|++.+..++.++|++.... ....+ ....+++||+||||||||++|++||+.++.||
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 368999999999999999999999999999998776441 11111 12247999999999999999999999999999
Q ss_pred eEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhH
Q psy2392 247 IKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTR 326 (1165)
Q Consensus 247 i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 326 (1165)
..++++.+..+||+|++.++.+..++..+
T Consensus 145 ~~~da~~L~~~gyvG~d~e~~L~~~~~~~--------------------------------------------------- 173 (413)
T TIGR00382 145 AIADATTLTEAGYVGEDVENILLKLLQAA--------------------------------------------------- 173 (413)
T ss_pred EEechhhccccccccccHHHHHHHHHHhC---------------------------------------------------
Confidence 99999999889999998777676665441
Q ss_pred HHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcCh
Q psy2392 327 QIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 406 (1165)
Q Consensus 327 ~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (1165)
.+
T Consensus 174 --------~~---------------------------------------------------------------------- 175 (413)
T TIGR00382 174 --------DY---------------------------------------------------------------------- 175 (413)
T ss_pred --------cc----------------------------------------------------------------------
Confidence 00
Q ss_pred hHHHHHHHhhhccceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeee-----------eceeecCceEE
Q psy2392 407 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHIL 474 (1165)
Q Consensus 407 ~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~-----------~~~~~~t~~il 474 (1165)
.+.. .++||||||||||++++..+.+ +.|+|+++||+.||+++||+.++. .+..++|+||+
T Consensus 176 ------~l~~-a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNil 248 (413)
T TIGR00382 176 ------DVEK-AQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNIL 248 (413)
T ss_pred ------cHHh-cccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCce
Confidence 0001 1578999999999998765533 689999999999999999877642 23489999999
Q ss_pred EEEeCCcccC--------------------CC------------------CCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 475 FIASGAFHLA--------------------KP------------------SDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 475 fI~~gaf~~~--------------------~p------------------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|||+|||... .+ ..|+|||+||+|++|.|++|+.+++.+|++
T Consensus 249 fi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~ 328 (413)
T TIGR00382 249 FICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILT 328 (413)
T ss_pred eeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHH
Confidence 9999999510 00 028899999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEcccc
Q psy2392 517 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADY 592 (1165)
Q Consensus 517 ~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~ 592 (1165)
.+.+.+++|++++++.+|++|.|+++|+++|++.|++ +.+|||+|+++|++.+.+.+|+.|... ++||+++
T Consensus 329 ~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~-----~~~GAR~Lr~iie~~l~~~m~e~p~~~~~~~v~i~~~~ 403 (413)
T TIGR00382 329 KPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALE-----RKTGARGLRSIVEGLLLDVMFDLPSLEDLEKVVITKET 403 (413)
T ss_pred HHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCC-----CCCCchHHHHHHHHhhHHHHhhCCCCCCCcEEEECHHH
Confidence 9999999999999999999999999999999999998 689999999999999999999999864 7899999
Q ss_pred ccccc
Q psy2392 593 VNSRL 597 (1165)
Q Consensus 593 v~~~~ 597 (1165)
|+...
T Consensus 404 v~~~~ 408 (413)
T TIGR00382 404 VLKQS 408 (413)
T ss_pred HcCcC
Confidence 97653
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=355.39 Aligned_cols=426 Identities=23% Similarity=0.369 Sum_probs=305.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
..+.|.......+...+..+.+...++...+.. .|.++|+|||||||||.+++++|++.+..++.++++++.+. |.|+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~-~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k-~~gE 261 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIK-PPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK-FPGE 261 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCC-CCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHh-cccc
Confidence 477888888899999988877666665443332 36899999999999999999999999999999999998874 7777
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ++.++..|+.+.
T Consensus 262 t-e~~LR~~f~~a~------------------------------------------------------------------ 274 (693)
T KOG0730|consen 262 T-ESNLRKAFAEAL------------------------------------------------------------------ 274 (693)
T ss_pred h-HHHHHHHHHHHh------------------------------------------------------------------
Confidence 7 566888887730
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
+ ...+.|
T Consensus 275 -----------------------------------------------------------k--------------~~~psi 281 (693)
T KOG0730|consen 275 -----------------------------------------------------------K--------------FQVPSI 281 (693)
T ss_pred -----------------------------------------------------------c--------------cCCCee
Confidence 0 012789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh-CCCCeeE
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-GRFPIRV 501 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~-~R~~~~v 501 (1165)
+||||||.+++++....+ ++++ +-.+|+.+++|-. ...++++|++ +++|..+.|.|+ ||||..|
T Consensus 282 i~IdEld~l~p~r~~~~~--~e~R-v~sqlltL~dg~~--------~~~~vivl~a----tnrp~sld~alRRgRfd~ev 346 (693)
T KOG0730|consen 282 IFIDELDALCPKREGADD--VESR-VVSQLLTLLDGLK--------PDAKVIVLAA----TNRPDSLDPALRRGRFDREV 346 (693)
T ss_pred EeHHhHhhhCCcccccch--HHHH-HHHHHHHHHhhCc--------CcCcEEEEEe----cCCccccChhhhcCCCccee
Confidence 999999999998776333 3333 4457999999732 3567888887 478999999999 7999999
Q ss_pred ecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhccc
Q psy2392 502 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNS 581 (1165)
Q Consensus 502 ~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~ 581 (1165)
++.-++..+...||+ .+ ++++++. ++..+..+|..+.. ..||. |-.++ ...+
T Consensus 347 ~IgiP~~~~RldIl~----~l---------~k~~~~~-~~~~l~~iA~~thG------yvGaD-L~~l~----~ea~--- 398 (693)
T KOG0730|consen 347 EIGIPGSDGRLDILR----VL---------TKKMNLL-SDVDLEDIAVSTHG------YVGAD-LAALC----REAS--- 398 (693)
T ss_pred eecCCCchhHHHHHH----HH---------HHhcCCc-chhhHHHHHHHccc------hhHHH-HHHHH----HHHH---
Confidence 999999999999984 12 1233333 56667777776654 24442 11111 0000
Q ss_pred CCCeeEEcccccccccccCcccccccccccccccccCcceeeeecCCcccccCCccccccccccCcchHHHHhhhhcccc
Q psy2392 582 NNISLLVDADYVNSRLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVL 661 (1165)
Q Consensus 582 ~~~~~~i~~~~v~~~~~~~~~~~dls~~i~~~~~~~gt~~~aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi 661 (1165)
++ .+-
T Consensus 399 --------------------------------------------------------------------------~~-~~r 403 (693)
T KOG0730|consen 399 --------------------------------------------------------------------------LQ-ATR 403 (693)
T ss_pred --------------------------------------------------------------------------HH-Hhh
Confidence 11 000
Q ss_pred cccCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccchHHHHhhhhhhhhhhhhcCCCCccCccccccccc
Q psy2392 662 AGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAIG 741 (1165)
Q Consensus 662 ~v~EPs~edT~~IL~glk~~yE~~h~~aL~aav~LS~ryi~~R~lPDkdlid~a~a~~~~~~~s~~~~~~~~~~~i~~i~ 741 (1165)
...+.+. .+.. .
T Consensus 404 ------------------~~~~~~~----------------------~A~~-----~----------------------- 415 (693)
T KOG0730|consen 404 ------------------RTLEIFQ----------------------EALM-----G----------------------- 415 (693)
T ss_pred ------------------hhHHHHH----------------------HHHh-----c-----------------------
Confidence 0000000 0000 0
Q ss_pred cccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEE
Q psy2392 742 SGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILM 821 (1165)
Q Consensus 742 ~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL 821 (1165)
+-|+.+ +...-+..+.-|++|.|++++|+.|.++|.++.+....+.... ..+|+++||
T Consensus 416 ------------------i~psa~---Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G-i~ppkGVLl 473 (693)
T KOG0730|consen 416 ------------------IRPSAL---REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG-ISPPKGVLL 473 (693)
T ss_pred ------------------CCchhh---hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc-CCCCceEEE
Confidence 000000 1111222334468999999999999999987654332222111 123799999
Q ss_pred EccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhh
Q psy2392 822 IGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDIL 901 (1165)
Q Consensus 822 ~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~l 901 (1165)
|||||||||++||++|++.+.+|+.+.++++.++ |+|++ +..++++|++|++.
T Consensus 474 yGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk-~vGeS-Er~ir~iF~kAR~~------------------------- 526 (693)
T KOG0730|consen 474 YGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK-YVGES-ERAIREVFRKARQV------------------------- 526 (693)
T ss_pred ECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH-hcCch-HHHHHHHHHHHhhc-------------------------
Confidence 9999999999999999999999999999999999 99999 57799999888332
Q ss_pred cCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccc
Q psy2392 902 VPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKT 981 (1165)
Q Consensus 902 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1165)
T Consensus 527 -------------------------------------------------------------------------------- 526 (693)
T KOG0730|consen 527 -------------------------------------------------------------------------------- 526 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee
Q psy2392 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 1061 (1165)
Q Consensus 982 ~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~ 1061 (1165)
.++|||+||||.|+++++++++ +++. -|-..||.-|+|
T Consensus 527 -----------------------------------aP~IiFfDEiDsi~~~R~g~~~-~v~~-RVlsqLLtEmDG----- 564 (693)
T KOG0730|consen 527 -----------------------------------APCIIFFDEIDALAGSRGGSSS-GVTD-RVLSQLLTEMDG----- 564 (693)
T ss_pred -----------------------------------CCeEEehhhHHhHhhccCCCcc-chHH-HHHHHHHHHccc-----
Confidence 4679999999999999875333 3332 366778888886
Q ss_pred eeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1062 KYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1062 k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
...-.|++.||++ +.|..+.|+|++ ||.-.+.+++++.+--.+||+
T Consensus 565 ---~e~~k~V~ViAAT----NRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk 612 (693)
T KOG0730|consen 565 ---LEALKNVLVIAAT----NRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILK 612 (693)
T ss_pred ---ccccCcEEEEecc----CChhhcCHHHcCCcccceeEeecCccHHHHHHHHH
Confidence 3334689999996 599999999996 999999999999999999998
|
|
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=350.74 Aligned_cols=255 Identities=38% Similarity=0.668 Sum_probs=211.7
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCC--CCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPL--QQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~--~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+|.++.+.|++.|+||++|++.+..++..+|++....... .......++||+||||||||++|+++|+.++.||+.
T Consensus 59 ~~~p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 59 LPTPKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred CCCHHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 468999999999999999999999999999888776432110 112235899999999999999999999999999999
Q ss_pred EecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHH
Q psy2392 847 IEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQI 926 (1165)
Q Consensus 847 l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~ 926 (1165)
+|++.+++.||+|.+.+..+..++..+
T Consensus 139 id~~~l~~~gyvG~d~e~~l~~l~~~~----------------------------------------------------- 165 (412)
T PRK05342 139 ADATTLTEAGYVGEDVENILLKLLQAA----------------------------------------------------- 165 (412)
T ss_pred cchhhcccCCcccchHHHHHHHHHHhc-----------------------------------------------------
Confidence 999999999999998766555443221
Q ss_pred HHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 1006 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~ 1006 (1165)
.+ .
T Consensus 166 ------~~-----------------------------------------------------------------------~ 168 (412)
T PRK05342 166 ------DY-----------------------------------------------------------------------D 168 (412)
T ss_pred ------cc-----------------------------------------------------------------------c
Confidence 00 0
Q ss_pred HHHHHHHhhhcCCeeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCcccee-----------eeeeccCceEEEE
Q psy2392 1007 IQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFI 1074 (1165)
Q Consensus 1007 ~~~~a~~~~~~~gIvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~-----------k~~~~~t~~ilfI 1074 (1165)
+ +.| ++|||||||||++...+.+. .+.|+|++|||+.||.+|||+.++. .+..++|.|||||
T Consensus 169 ~-~~a-----~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi 242 (412)
T PRK05342 169 V-EKA-----QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFI 242 (412)
T ss_pred H-HHc-----CCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceee
Confidence 0 122 67999999999999875433 4579999999999999999987654 2458999999999
Q ss_pred ecCCCCC------------------C-----------------CCC-----CCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1075 ASGAFHL------------------A-----------------KPS-----DLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1075 ~~gaf~~------------------~-----------------~p~-----dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|+|||.. . .|. .|+|||+||+|++|.|.+|++++|.+|++
T Consensus 243 ~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 243 CGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred ecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHH
Confidence 9999972 0 011 17899999999999999999999999999
Q ss_pred hhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCcee
Q psy2392 1115 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1115 ~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
+|.+.+++||+++++.+|++|.|+++|+++||+.||+.++||+++
T Consensus 323 ~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~L 367 (412)
T PRK05342 323 EPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGL 367 (412)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchH
Confidence 999999999999999999999999999999999999996666654
|
|
| >KOG1051|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=364.43 Aligned_cols=396 Identities=20% Similarity=0.244 Sum_probs=283.0
Q ss_pred eeecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHH
Q psy2392 623 SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELA 697 (1165)
Q Consensus 623 aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS 697 (1165)
+|+||.+.||||||.+||++||++|||++|| || .+. |.+|+.++|..||++++.+||-||| +++..++.+|
T Consensus 311 ~L~rg~l~~IGatT~e~Y~k~iekdPalErr--w~-l~~-v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s 386 (898)
T KOG1051|consen 311 LLARGGLWCIGATTLETYRKCIEKDPALERR--WQ-LVL-VPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLS 386 (898)
T ss_pred HHhcCCeEEEecccHHHHHHHHhhCcchhhC--cc-eeE-eccCcccchhhhhhhhhhhhccccCCcccccccccccchh
Confidence 4678889999999999999999999999999 99 788 9999999999999999999999999 9999999999
Q ss_pred HHHhcccccchH--HHHhhhhhhhhhhhhcCCC--------C-c-----cCcccccc-----------------------
Q psy2392 698 KEWRNDRTLRRL--EAMLLTANRETTLIITGNG--------D-V-----LEPENGIG----------------------- 738 (1165)
Q Consensus 698 ~ryi~~R~lPDk--dlid~a~a~~~~~~~s~~~--------~-~-----~~~~~~i~----------------------- 738 (1165)
.+|++.|++||+ ++.+++++..+....+-+. . . .+....+.
T Consensus 387 ~~~~t~r~lpd~aidl~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~~~~~~~~~~~~~~l~ 466 (898)
T KOG1051|consen 387 ARYITLSFLPDCAIDLEDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPSLESLAPSKPTQQPLS 466 (898)
T ss_pred hhhcccCcCchhcccHHHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccccccccccccccccch
Confidence 999999999995 5578877765542111000 0 0 00000000
Q ss_pred -----------cccc-------cc---------c-------------------------cHHHHHHHhhhccCCChHHH-
Q psy2392 739 -----------AIGS-------GG---------I-------------------------FAQSAAKALQENTELMPDEI- 765 (1165)
Q Consensus 739 -----------~i~~-------~~---------~-------------------------~~~~~a~~l~~~t~~~~~~i- 765 (1165)
.+.. .. . ....++.....||+.+....
T Consensus 467 ~~~~~~~s~~~~l~~~~~~~~~~~~~~k~~r~~d~~~~~~l~~~~~p~~~~~~~~~~~~~~~~i~~~~s~~tgip~~~~~ 546 (898)
T KOG1051|consen 467 ASVDSERSVIEELKLKKNSLDRNSLLAKAHRPNDYTRETDLRYGRIPDELSEKSNDNQGGESDISEVVSRWTGIPVDRLA 546 (898)
T ss_pred hhhccchhHHhhhccccCCcccchhhhcccCCCCcchhhhccccccchhhhhhcccccCCccchhhhhhhhcCCchhhhh
Confidence 0000 00 0 00134445566777666554
Q ss_pred HHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CC
Q psy2392 766 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NA 842 (1165)
Q Consensus 766 ~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~ 842 (1165)
..+..+...|.+.|.+.|+||++|+..|..+|... +.|+..+ . +...|+|.||+|+|||.+|++||+.+ ..
T Consensus 547 ~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~s--r~gl~~~-~---~~awflflGpdgvGKt~lAkaLA~~~Fgse~ 620 (898)
T KOG1051|consen 547 EAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRS--RAGLKDP-N---PDAWFLFLGPDGVGKTELAKALAEYVFGSEE 620 (898)
T ss_pred hhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhh--hcccCCC-C---CCeEEEEECCCchhHHHHHHHHHHHHcCCcc
Confidence 34678999999999999999999999999999976 7777665 2 25899999999999999999999998 57
Q ss_pred CeEEEecCCccc--------ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCcccc
Q psy2392 843 PFIKIEATKFTE--------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDF 914 (1165)
Q Consensus 843 ~fi~l~~se~~~--------~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~ 914 (1165)
.|+++||++|.+ +||+|+..++.+++.+ +.+||++++++++|+||+.+.+.|+|
T Consensus 621 ~~IriDmse~~evskligsp~gyvG~e~gg~Lteav-------rrrP~sVVLfdeIEkAh~~v~n~llq----------- 682 (898)
T KOG1051|consen 621 NFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAV-------KRRPYSVVLFEEIEKAHPDVLNILLQ----------- 682 (898)
T ss_pred ceEEechhhhhhhhhccCCCcccccchhHHHHHHHH-------hcCCceEEEEechhhcCHHHHHHHHH-----------
Confidence 799999999654 6999999888777753 45799999999999999999999977
Q ss_pred CCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHH
Q psy2392 915 NNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLI 994 (1165)
Q Consensus 915 ~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~ 994 (1165)
++++||+-|. +.+.++
T Consensus 683 ---------------~lD~GrltDs----------------------------------------~Gr~Vd--------- 698 (898)
T KOG1051|consen 683 ---------------LLDRGRLTDS----------------------------------------HGREVD--------- 698 (898)
T ss_pred ---------------HHhcCccccC----------------------------------------CCcEee---------
Confidence 5788888322 111111
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcc-----ccccCccc-ee--eeeec
Q psy2392 995 DEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLL-----PLVEGTTV-NT--KYGII 1066 (1165)
Q Consensus 995 ~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL-----~~~Eg~~v-~~--k~~~~ 1066 (1165)
+ .+.||+. +++. +++. +-++.. --.++... .. +--..
T Consensus 699 ------------~---------kN~I~IM-------Tsn~---~~~~----i~~~~~~~~~l~~~~~~~~~~~~~k~~v~ 743 (898)
T KOG1051|consen 699 ------------F---------KNAIFIM-------TSNV---GSSA----IANDASLEEKLLDMDEKRGSYRLKKVQVS 743 (898)
T ss_pred ------------c---------cceEEEE-------eccc---chHh----hhcccccccccccchhhhhhhhhhhhhhh
Confidence 0 4455543 3211 1121 112211 01111111 00 00011
Q ss_pred cCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHH
Q psy2392 1067 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLA 1146 (1165)
Q Consensus 1067 ~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia 1146 (1165)
+... | .+++.+.|||++|+.-.+.|.+|+.+++.+|+..+ +..-..-++..++.+.+++.+...++
T Consensus 744 ~~~~---~-------~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~----~~e~~~r~~~~~~~~~v~~~~~~~v~ 809 (898)
T KOG1051|consen 744 DAVR---I-------YNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQ----LTEIEKRLEERELLLLVTDRVDDKVL 809 (898)
T ss_pred hhhh---c-------ccccccChHHhcccceeeeecccchhhHhhhhhhH----HHHHHHHhhhhHHHHHHHHHHHhhhh
Confidence 1111 1 12267899999999999999999999999998833 33333344555578899999999999
Q ss_pred HHHhccCcCCcee
Q psy2392 1147 EIAYCINERTENI 1159 (1165)
Q Consensus 1147 ~~a~~~~~~~~ni 1159 (1165)
...|+-++++++|
T Consensus 810 ~~~~d~~ygAr~i 822 (898)
T KOG1051|consen 810 FKGYDFDYGARPI 822 (898)
T ss_pred hcCcChHHHhhHH
Confidence 9999997777765
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=342.68 Aligned_cols=256 Identities=39% Similarity=0.659 Sum_probs=211.1
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhccc--CCCCC--CCCCceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT--GPLQQ--EITPKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~--~~~~~--~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
..+|.++++.|++.|+||++|++.+..++.++|++.... ....+ ...++++||+||||||||++|+++|+.++.||
T Consensus 65 ~~~p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 65 LPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred CCCHHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 357899999999999999999999999999998887541 11101 12357999999999999999999999999999
Q ss_pred EEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhH
Q psy2392 845 IKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTR 924 (1165)
Q Consensus 845 i~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r 924 (1165)
..++++.+..+||+|++.+..+..++..+
T Consensus 145 ~~~da~~L~~~gyvG~d~e~~L~~~~~~~--------------------------------------------------- 173 (413)
T TIGR00382 145 AIADATTLTEAGYVGEDVENILLKLLQAA--------------------------------------------------- 173 (413)
T ss_pred EEechhhccccccccccHHHHHHHHHHhC---------------------------------------------------
Confidence 99999999989999998666655543221
Q ss_pred HHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCH
Q psy2392 925 QIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 1004 (1165)
Q Consensus 925 ~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~ 1004 (1165)
++
T Consensus 174 --------~~---------------------------------------------------------------------- 175 (413)
T TIGR00382 174 --------DY---------------------------------------------------------------------- 175 (413)
T ss_pred --------cc----------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHhhhcCCeeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCcccee-----------eeeeccCceEE
Q psy2392 1005 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHIL 1072 (1165)
Q Consensus 1005 ~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~-----------k~~~~~t~~il 1072 (1165)
.+ +.| ++||||||||||+....++. .+.|+|++|||+.||.++||+.++. .+..++|+|||
T Consensus 176 -~l-~~a-----~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNil 248 (413)
T TIGR00382 176 -DV-EKA-----QKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNIL 248 (413)
T ss_pred -cH-Hhc-----ccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCce
Confidence 00 112 67999999999999875443 4579999999999999999977642 23589999999
Q ss_pred EEecCCCCC---------C-----------C-------------CC-----CCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1073 FIASGAFHL---------A-----------K-------------PS-----DLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1073 fI~~gaf~~---------~-----------~-------------p~-----dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|||+|||.- . . |. .|+|||+||+|++|.|.||+.++|.+|++
T Consensus 249 fi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~ 328 (413)
T TIGR00382 249 FICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILT 328 (413)
T ss_pred eeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHH
Confidence 999999951 0 0 00 27899999999999999999999999999
Q ss_pred hhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1115 STNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1115 ~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
+|.+.+++||+++++.+|++|.|+++|+++||+.||+.++||+++-
T Consensus 329 ~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr 374 (413)
T TIGR00382 329 KPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLR 374 (413)
T ss_pred HHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHH
Confidence 9999999999999999999999999999999999999966666543
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=348.78 Aligned_cols=180 Identities=25% Similarity=0.391 Sum_probs=140.9
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
-|++|+|++.+++.|.+.+.++++...+...... ..|.++|||||||||||++|+++|++++.+|+.++++++.++ |+
T Consensus 451 ~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~-~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~-~v 528 (733)
T TIGR01243 451 RWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGI-RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK-WV 528 (733)
T ss_pred chhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc-cc
Confidence 4578999999999999998865544433322111 126899999999999999999999999999999999999888 99
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|++ +..++++|..|...
T Consensus 529 Ges-e~~i~~~f~~A~~~-------------------------------------------------------------- 545 (733)
T TIGR01243 529 GES-EKAIREIFRKARQA-------------------------------------------------------------- 545 (733)
T ss_pred CcH-HHHHHHHHHHHHhc--------------------------------------------------------------
Confidence 998 45688887666111
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
++
T Consensus 546 ------------------------------------------------------------------------------~p 547 (733)
T TIGR01243 546 ------------------------------------------------------------------------------AP 547 (733)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 56
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
+||||||||+|+...++..+..+ ...+...||..++|. ...+++++|+++ +.|+.+.|+++ |||.
T Consensus 548 ~iifiDEid~l~~~r~~~~~~~~-~~~~~~~lL~~ldg~--------~~~~~v~vI~aT----n~~~~ld~allRpgRfd 614 (733)
T TIGR01243 548 AIIFFDEIDAIAPARGARFDTSV-TDRIVNQLLTEMDGI--------QELSNVVVIAAT----NRPDILDPALLRPGRFD 614 (733)
T ss_pred EEEEEEChhhhhccCCCCCCccH-HHHHHHHHHHHhhcc--------cCCCCEEEEEeC----CChhhCCHhhcCCCccc
Confidence 89999999999987543222222 233566788888862 234678899886 58999999998 5999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++++.++.++..+|++
T Consensus 615 ~~i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 615 RLILVPPPDEEARKEIFK 632 (733)
T ss_pred eEEEeCCcCHHHHHHHHH
Confidence 999999999999999987
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0736|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=269.25 Aligned_cols=209 Identities=20% Similarity=0.361 Sum_probs=154.5
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCC-CCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~-~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
+.-|++|.|.+++|..|.+.|..+++...++.. +++ ..++|||||||||||.+||++|.++..+|+.+.++|+.+.
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrk---RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRK---RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccc---cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 345799999999999999999988777766553 333 3799999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|||++++ .+|++|++|+..
T Consensus 745 -YVGqSE~-NVR~VFerAR~A----------------------------------------------------------- 763 (953)
T KOG0736|consen 745 -YVGQSEE-NVREVFERARSA----------------------------------------------------------- 763 (953)
T ss_pred -HhcchHH-HHHHHHHHhhcc-----------------------------------------------------------
Confidence 9999954 599999888322
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 764 -------------------------------------------------------------------------------- 763 (953)
T KOG0736|consen 764 -------------------------------------------------------------------------------- 763 (953)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCC--CCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh-
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQ--NNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ- 1092 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~--~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~- 1092 (1165)
.++|||+||+|.++.+++. +|| .+ ..-|-..||.-++|-.-. +++.+.+|+|+ ++|.=|.|.|+
T Consensus 764 -~PCVIFFDELDSlAP~RG~sGDSG-GV-MDRVVSQLLAELDgls~~------~s~~VFViGAT----NRPDLLDpALLR 830 (953)
T KOG0736|consen 764 -APCVIFFDELDSLAPNRGRSGDSG-GV-MDRVVSQLLAELDGLSDS------SSQDVFVIGAT----NRPDLLDPALLR 830 (953)
T ss_pred -CCeEEEeccccccCccCCCCCCcc-cc-HHHHHHHHHHHhhcccCC------CCCceEEEecC----CCccccChhhcC
Confidence 5789999999999998653 222 22 123556788888873221 34455566664 58877889998
Q ss_pred -ccCCeEEEcCCC-CHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCC
Q psy2392 1093 -GRFPIRVELDSL-SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 1156 (1165)
Q Consensus 1093 -gR~~i~v~l~~l-~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~ 1156 (1165)
|||.--|++.+- +.+.-.+||+ ++.+.+ --.++|+ +..||+.|-..=|||
T Consensus 831 PGRFDKLvyvG~~~d~esk~~vL~----AlTrkF---kLdedVd-------L~eiAk~cp~~~TGA 882 (953)
T KOG0736|consen 831 PGRFDKLVYVGPNEDAESKLRVLE----ALTRKF---KLDEDVD-------LVEIAKKCPPNMTGA 882 (953)
T ss_pred CCccceeEEecCCccHHHHHHHHH----HHHHHc---cCCCCcC-------HHHHHhhCCcCCchh
Confidence 899999999887 4455556666 443322 1133442 556777766554443
|
|
| >KOG0735|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=255.71 Aligned_cols=177 Identities=25% Similarity=0.384 Sum_probs=142.0
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccC--CCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITG--PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~--~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gy 857 (1165)
|++|.|..++++.+.+.+.++-+...++. +++. +.++|||||||||||+||.++|..++..|+.+.++++.++ |
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~---~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K-y 741 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRL---RTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK-Y 741 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCccc---ccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH-H
Confidence 47899999999999999987655444433 3333 5899999999999999999999999999999999999999 9
Q ss_pred cccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCC
Q psy2392 858 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld 937 (1165)
+|.++ ..+|++|.+|...
T Consensus 742 IGaSE-q~vR~lF~rA~~a------------------------------------------------------------- 759 (952)
T KOG0735|consen 742 IGASE-QNVRDLFERAQSA------------------------------------------------------------- 759 (952)
T ss_pred hcccH-HHHHHHHHHhhcc-------------------------------------------------------------
Confidence 99995 5699999887111
Q ss_pred CeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy2392 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 1017 (1165)
Q Consensus 938 ~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 1017 (1165)
.
T Consensus 760 -------------------------------------------------------------------------------~ 760 (952)
T KOG0735|consen 760 -------------------------------------------------------------------------------K 760 (952)
T ss_pred -------------------------------------------------------------------------------C
Confidence 5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~ 1095 (1165)
++|+|+||+|.|+..++..+. .+.. .|-+.||.-++|.... +-+..+|++ ++|.=+.|+|+ ||+
T Consensus 761 PCiLFFDEfdSiAPkRGhDsT-GVTD-RVVNQlLTelDG~Egl--------~GV~i~aaT----sRpdliDpALLRpGRl 826 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDST-GVTD-RVVNQLLTELDGAEGL--------DGVYILAAT----SRPDLIDPALLRPGRL 826 (952)
T ss_pred CeEEEeccccccCcccCCCCC-CchH-HHHHHHHHhhcccccc--------ceEEEEEec----CCccccCHhhcCCCcc
Confidence 789999999999998654322 2222 3677899999985543 344555554 58877889998 899
Q ss_pred CeEEEcCCCCHHHHHHHHhh
Q psy2392 1096 PIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~ 1115 (1165)
.--|.-+.+++.+..+||+-
T Consensus 827 D~~v~C~~P~~~eRl~il~~ 846 (952)
T KOG0735|consen 827 DKLVYCPLPDEPERLEILQV 846 (952)
T ss_pred ceeeeCCCCCcHHHHHHHHH
Confidence 99999999999999999983
|
|
| >KOG0730|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=256.21 Aligned_cols=328 Identities=19% Similarity=0.261 Sum_probs=237.3
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhh-hhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKV-RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRND 105 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~R-R~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~~ 105 (1165)
+++.+.||+||..-.=- |+||.| | |. .=+.|.-|+..+...||+-+-++++-.....|.++...++.|.-
T Consensus 317 ~~~~vivl~atnrp~sl-----d~alRRgR--fd-~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvG- 387 (693)
T KOG0730|consen 317 PDAKVIVLAATNRPDSL-----DPALRRGR--FD-REVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVG- 387 (693)
T ss_pred CcCcEEEEEecCCcccc-----ChhhhcCC--Cc-ceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhH-
Confidence 68999999999865544 999998 8 99 55569999999999999999999886533788888888888876
Q ss_pred CCchhHHHHHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHHhcccE
Q psy2392 106 RTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYV 185 (1165)
Q Consensus 106 r~lPDkalld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~L~~~I 185 (1165)
-|.+.+--.++..+... ..++... |. .++-+..+. ....+....=+++|
T Consensus 388 ---aDL~~l~~ea~~~~~r~--------~~~~~~~------------A~-----~~i~psa~R---e~~ve~p~v~W~dI 436 (693)
T KOG0730|consen 388 ---ADLAALCREASLQATRR--------TLEIFQE------------AL-----MGIRPSALR---EILVEMPNVSWDDI 436 (693)
T ss_pred ---HHHHHHHHHHHHHHhhh--------hHHHHHH------------HH-----hcCCchhhh---heeccCCCCChhhc
Confidence 45543322222222210 0000010 00 011111110 11122233336789
Q ss_pred ecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchh
Q psy2392 186 IGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVD 265 (1165)
Q Consensus 186 iGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~ 265 (1165)
.|++++|+.+.+++.++.+++..+.+.+. .+|+++|||||||||||++||++|++.+.+|+.+.+.++.++ |+|++ +
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi-~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk-~vGeS-E 513 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGI-SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSK-YVGES-E 513 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcC-CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHH-hcCch-H
Confidence 99999999999999988877766555442 246999999999999999999999999999999999999998 99999 6
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEE
Q psy2392 266 TIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEI 345 (1165)
Q Consensus 266 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~ 345 (1165)
..++++|+++
T Consensus 514 r~ir~iF~kA---------------------------------------------------------------------- 523 (693)
T KOG0730|consen 514 RAIREVFRKA---------------------------------------------------------------------- 523 (693)
T ss_pred HHHHHHHHHH----------------------------------------------------------------------
Confidence 7799999883
Q ss_pred EecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEE
Q psy2392 346 ELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFL 425 (1165)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Iifi 425 (1165)
.+. .++|||+
T Consensus 524 --------------------------------------------------------------------R~~--aP~IiFf 533 (693)
T KOG0730|consen 524 --------------------------------------------------------------------RQV--APCIIFF 533 (693)
T ss_pred --------------------------------------------------------------------hhc--CCeEEeh
Confidence 111 3699999
Q ss_pred ecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCeeEec
Q psy2392 426 DEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVEL 503 (1165)
Q Consensus 426 DEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~v~~ 503 (1165)
||||.++.++.++++ ++ .+.|-..||.-|+|-. ...|+++||++ ++|..++|+|+ |||+..+.+
T Consensus 534 DEiDsi~~~R~g~~~-~v-~~RVlsqLLtEmDG~e--------~~k~V~ViAAT----NRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 534 DEIDALAGSRGGSSS-GV-TDRVLSQLLTEMDGLE--------ALKNVLVIAAT----NRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred hhHHhHhhccCCCcc-ch-HHHHHHHHHHHccccc--------ccCcEEEEecc----CChhhcCHHHcCCcccceeEee
Confidence 999999999875333 33 3458889999999843 44689999994 78999999999 599999999
Q ss_pred CCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHH-HHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 504 DSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 504 ~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~-a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
++++.+...+||+ ++ ++++ .++++ .++.||+.... -.|| -|..+....
T Consensus 600 plPD~~aR~~Ilk--------~~-----~kkm--p~~~~vdl~~La~~T~g------~SGA-el~~lCq~A 648 (693)
T KOG0730|consen 600 PLPDLEARLEILK--------QC-----AKKM--PFSEDVDLEELAQATEG------YSGA-EIVAVCQEA 648 (693)
T ss_pred cCccHHHHHHHHH--------HH-----HhcC--CCCccccHHHHHHHhcc------CChH-HHHHHHHHH
Confidence 9999999999995 11 1222 45555 57788886643 2344 455555443
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-25 Score=242.13 Aligned_cols=240 Identities=23% Similarity=0.380 Sum_probs=184.7
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.++.++.|++++..+++++.++...+.. +|+++|||||||||||.|||++|+..+..|+++.+|+++++ |+|+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~-PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK-YiGE 228 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGID-PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGE 228 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCC-CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH-Hhcc
Confidence 589999999999999999999999888877654 57999999999999999999999999999999999999997 9999
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..+++++|+.|
T Consensus 229 G-aRlVRelF~lA------------------------------------------------------------------- 240 (406)
T COG1222 229 G-ARLVRELFELA------------------------------------------------------------------- 240 (406)
T ss_pred c-hHHHHHHHHHH-------------------------------------------------------------------
Confidence 9 78899999773
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
..+ .++|
T Consensus 241 -----------------------------------------------------------------------rek--aPsI 247 (406)
T COG1222 241 -----------------------------------------------------------------------REK--APSI 247 (406)
T ss_pred -----------------------------------------------------------------------hhc--CCeE
Confidence 111 4899
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccc---cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCC
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 497 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~---Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~ 497 (1165)
|||||||.|..++.+.++ ...+ -|||.+|.++ ||- =...||=+|+|+ ++|..|+|+|+ |||
T Consensus 248 IFiDEIDAIg~kR~d~~t-~gDr-EVQRTmleLL~qlDGF--------D~~~nvKVI~AT----NR~D~LDPALLRPGR~ 313 (406)
T COG1222 248 IFIDEIDAIGAKRFDSGT-SGDR-EVQRTMLELLNQLDGF--------DPRGNVKVIMAT----NRPDILDPALLRPGRF 313 (406)
T ss_pred EEEechhhhhcccccCCC-CchH-HHHHHHHHHHHhccCC--------CCCCCeEEEEec----CCccccChhhcCCCcc
Confidence 999999999999877332 2223 4999887776 552 235688899984 78999999999 899
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHH-HHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~-a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
+..|+|+.++.+...+||+- .+..++ ++++ -++.||+.+.. -.|| -|+.++ .|.
T Consensus 314 DRkIEfplPd~~gR~~Il~I-------------HtrkM~--l~~dvd~e~la~~~~g------~sGA-dlkaic---tEA 368 (406)
T COG1222 314 DRKIEFPLPDEEGRAEILKI-------------HTRKMN--LADDVDLELLARLTEG------FSGA-DLKAIC---TEA 368 (406)
T ss_pred cceeecCCCCHHHHHHHHHH-------------Hhhhcc--CccCcCHHHHHHhcCC------CchH-HHHHHH---HHH
Confidence 99999999999999999951 122222 2222 36778877754 3566 355543 344
Q ss_pred hhcccCCCeeEEcccccccccccCcccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGDLSINE 604 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~~~~~~ 604 (1165)
-+|-.-+....||.++..+.+.+.+.+.
T Consensus 369 Gm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 369 GMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred hHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 5555545556788777777666665533
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=242.44 Aligned_cols=147 Identities=26% Similarity=0.347 Sum_probs=110.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC-CchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD-LIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~-l~pel~~R~ 497 (1165)
...|+||||||++++.+|+ .|||.+|.++ |+||+++ +.+||. ++|+|+||+
T Consensus 104 r~tiLflDEIHRfnK~QQD-------------~lLp~vE~G~------------iilIGAT---TENPsF~ln~ALlSR~ 155 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQD-------------ALLPHVENGT------------IILIGAT---TENPSFELNPALLSRA 155 (436)
T ss_pred CceEEEEehhhhcChhhhh-------------hhhhhhcCCe------------EEEEecc---CCCCCeeecHHHhhhh
Confidence 4679999999999998665 9999999865 4567763 578876 899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
.+. +|+||+.+|+.++|+ +.+..... ...+..+.+++++++.|+..+ +++||++.+.+|.+..-.
T Consensus 156 ~vf-~lk~L~~~di~~~l~---ra~~~~~r---gl~~~~~~i~~~a~~~l~~~s--------~GD~R~aLN~LE~~~~~~ 220 (436)
T COG2256 156 RVF-ELKPLSSEDIKKLLK---RALLDEER---GLGGQIIVLDEEALDYLVRLS--------NGDARRALNLLELAALSA 220 (436)
T ss_pred hee-eeecCCHHHHHHHHH---HHHhhhhc---CCCcccccCCHHHHHHHHHhc--------CchHHHHHHHHHHHHHhc
Confidence 986 899999999999995 22322211 112334668999999999988 789999999999887542
Q ss_pred hcccCCCeeEEcccccccccccCccccc---------cccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGDLSINED---------LSRYDSGM 613 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~~~~~~d---------ls~~i~~~ 613 (1165)
. ... .++.+.+++.++.....+| +|+|++|+
T Consensus 221 ~----~~~-~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSv 260 (436)
T COG2256 221 E----PDE-VLILELLEEILQRRSARFDKDGDAHYDLISALHKSV 260 (436)
T ss_pred C----CCc-ccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhh
Confidence 1 111 3446777777766544333 78898877
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=245.11 Aligned_cols=175 Identities=30% Similarity=0.473 Sum_probs=141.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccC--CCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITG--PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~--~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
.++.|.+.++..+.+.+...+++..+.. ..++ +.++||+||||||||++|+++|+.++.+|+.+++++++++ |+
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~---~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk-~v 317 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRP---PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK-WV 317 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCC---CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc-cc
Confidence 6788899999999999987766655433 2222 5799999999999999999999999999999999999998 99
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|+. +..++++|..|...
T Consensus 318 Ges-ek~ir~~F~~A~~~-------------------------------------------------------------- 334 (494)
T COG0464 318 GES-EKNIRELFEKARKL-------------------------------------------------------------- 334 (494)
T ss_pred chH-HHHHHHHHHHHHcC--------------------------------------------------------------
Confidence 998 56789988777211
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
++
T Consensus 335 ------------------------------------------------------------------------------~p 336 (494)
T COG0464 335 ------------------------------------------------------------------------------AP 336 (494)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 57
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
+||||||||+++.....++ +.+..-+...||..++| .-..++++.|++. +.|+.+.|++++ ||.
T Consensus 337 ~iiFiDEiDs~~~~r~~~~--~~~~~r~~~~lL~~~d~--------~e~~~~v~vi~aT----N~p~~ld~a~lR~gRfd 402 (494)
T COG0464 337 SIIFIDEIDSLASGRGPSE--DGSGRRVVGQLLTELDG--------IEKAEGVLVIAAT----NRPDDLDPALLRPGRFD 402 (494)
T ss_pred cEEEEEchhhhhccCCCCC--chHHHHHHHHHHHHhcC--------CCccCceEEEecC----CCccccCHhhcccCccc
Confidence 8999999999999865422 11223477778888875 2344567777775 589999999998 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
.++.+++++.++..+|++
T Consensus 403 ~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 403 RLIYVPLPDLEERLEIFK 420 (494)
T ss_pred eEeecCCCCHHHHHHHHH
Confidence 999999999999999998
|
|
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=239.28 Aligned_cols=321 Identities=18% Similarity=0.251 Sum_probs=217.6
Q ss_pred CCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCCCc
Q psy2392 29 GNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTL 108 (1165)
Q Consensus 29 Gel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~~r~l 108 (1165)
..+.|||||+.=.-- ||||.|--.|. .=+++.-||...--.||+-+..++--.-.--+..+++|..-|+-
T Consensus 328 ~~VlVIgATnRPDsl-----DpaLRRaGRFd-rEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVG---- 397 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSL-----DPALRRAGRFD-REICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVG---- 397 (802)
T ss_pred CCeEEEecCCCCccc-----CHHHhcccccc-ceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccc----
Confidence 348899999976544 99999844499 56679999999999999999886542112334455555555555
Q ss_pred hhH-HHHHhhhhhhhhhhcc--CCCCccCc--cc----cccc----cc--cc----chhhHHHHHHhhhccccCchhhhh
Q psy2392 109 RRL-EAMLLTANRETTLIIT--GNGDVLEP--EN----GIGA----IG--SG----GIFAQSAAKALQENTELMPDEIIK 169 (1165)
Q Consensus 109 PDk-alld~a~a~~~~~~~~--~~~~~~~~--e~----~~~~----~~--~~----~~~~~~va~~l~~~t~l~~~~i~~ 169 (1165)
-|+ |+.-+|+-.+...+++ .++....+ ++ ..+. +. +. ......+++.+..|..-...+...
T Consensus 398 ADL~AL~~~Aa~vAikR~ld~~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~ 477 (802)
T KOG0733|consen 398 ADLMALCREAAFVAIKRILDQSSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLE 477 (802)
T ss_pred hhHHHHHHHHHHHHHHHHhhcccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhc
Confidence 343 3333332222222221 11000000 00 0000 10 00 011112333333332211111111
Q ss_pred h-hhHH-------------------HHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCC
Q psy2392 170 K-SLVI-------------------AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 229 (1165)
Q Consensus 170 ~-~~~~-------------------~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~ 229 (1165)
. ...+ ..+...-+++|.|++++...+..+|..+++++.+....+.. .|.++||||||||
T Consensus 478 ~L~i~~eDF~~Al~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGC 556 (802)
T KOG0733|consen 478 GLSIKFEDFEEALSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGC 556 (802)
T ss_pred cceecHHHHHHHHHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCc
Confidence 0 0111 12223346789999999999999999999888777665544 4789999999999
Q ss_pred CchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcC
Q psy2392 230 GKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEK 309 (1165)
Q Consensus 230 GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 309 (1165)
|||.|||++|++.+.+|+.+-..++.+. |||++ +..++.+|..+
T Consensus 557 GKTLlAKAVANEag~NFisVKGPELlNk-YVGES-ErAVR~vFqRA---------------------------------- 600 (802)
T KOG0733|consen 557 GKTLLAKAVANEAGANFISVKGPELLNK-YVGES-ERAVRQVFQRA---------------------------------- 600 (802)
T ss_pred cHHHHHHHHhhhccCceEeecCHHHHHH-HhhhH-HHHHHHHHHHh----------------------------------
Confidence 9999999999999999999999999997 99999 66788888773
Q ss_pred CCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHH
Q psy2392 310 SNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIR 389 (1165)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (1165)
T Consensus 601 -------------------------------------------------------------------------------- 600 (802)
T KOG0733|consen 601 -------------------------------------------------------------------------------- 600 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeec
Q psy2392 390 EAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK 469 (1165)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~ 469 (1165)
.. ..+||||+||||.+++++.... ..++..|.+.||.-|||.. .
T Consensus 601 ------------------------R~--saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~--------~ 644 (802)
T KOG0733|consen 601 ------------------------RA--SAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLE--------E 644 (802)
T ss_pred ------------------------hc--CCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccc--------c
Confidence 11 2489999999999999987733 3345568899999999843 4
Q ss_pred CceEEEEEeCCcccCCCCCCchhhh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 470 TDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 470 t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+++|+++ ++|.-++|+++ |||+-......++.+|...||+
T Consensus 645 R~gV~viaAT----NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK 689 (802)
T KOG0733|consen 645 RRGVYVIAAT----NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILK 689 (802)
T ss_pred ccceEEEeec----CCCcccchhhcCCCccCceeeecCCCHHHHHHHHH
Confidence 5678888884 78999999998 8999999999999999999995
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.3e-24 Score=234.40 Aligned_cols=180 Identities=26% Similarity=0.464 Sum_probs=150.0
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|.|.++.+++|.+++..+++...++...... +|+++|||||||||||.|||++|+..++.|+++.+|+++++ |+|+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~-PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK-YiGE 228 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGID-PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGE 228 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCC-CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH-Hhcc
Confidence 689999999999999999887776666544332 37999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..+++++|+.|+.+
T Consensus 229 G-aRlVRelF~lArek---------------------------------------------------------------- 243 (406)
T COG1222 229 G-ARLVRELFELAREK---------------------------------------------------------------- 243 (406)
T ss_pred c-hHHHHHHHHHHhhc----------------------------------------------------------------
Confidence 9 57899999888333
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.++|
T Consensus 244 ----------------------------------------------------------------------------aPsI 247 (406)
T COG1222 244 ----------------------------------------------------------------------------APSI 247 (406)
T ss_pred ----------------------------------------------------------------------------CCeE
Confidence 4679
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
|||||||.|++.+.. +++...+| |||.||.++-. --|--..+||=+|+|+ ++|.-|.|+|+ |||.-.
T Consensus 248 IFiDEIDAIg~kR~d-~~t~gDrE-VQRTmleLL~q-----lDGFD~~~nvKVI~AT----NR~D~LDPALLRPGR~DRk 316 (406)
T COG1222 248 IFIDEIDAIGAKRFD-SGTSGDRE-VQRTMLELLNQ-----LDGFDPRGNVKVIMAT----NRPDILDPALLRPGRFDRK 316 (406)
T ss_pred EEEechhhhhccccc-CCCCchHH-HHHHHHHHHHh-----ccCCCCCCCeEEEEec----CCccccChhhcCCCcccce
Confidence 999999999998654 23333455 99988877521 0133345788889986 58999999999 899999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
|+|+.++.+...+||+
T Consensus 317 IEfplPd~~gR~~Il~ 332 (406)
T COG1222 317 IEFPLPDEEGRAEILK 332 (406)
T ss_pred eecCCCCHHHHHHHHH
Confidence 9999999999999998
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.9e-21 Score=241.92 Aligned_cols=292 Identities=23% Similarity=0.321 Sum_probs=203.2
Q ss_pred hhhccccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHH
Q psy2392 156 LQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235 (1165)
Q Consensus 156 l~~~t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lA 235 (1165)
|..++++||.....+..++..+.+.|+++++||+++++.+.+.+.....+ . .....++||+||||||||++|
T Consensus 293 l~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~----~----~~~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 293 LDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLR----G----KMKGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred HHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhh----c----CCCCceEEEECCCCCCHHHHH
Confidence 44457899998887788899999999999999999999999877643111 1 112358999999999999999
Q ss_pred HHHHHHhCCCceEEeccccccc--------cccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy2392 236 RRLAKLSNAPFIKIEATKFTEV--------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSK 307 (1165)
Q Consensus 236 k~lA~~l~~~~i~ld~s~~~~~--------GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (1165)
+++|+.++.+|++++++.+... +|+|...+.. ...+.
T Consensus 365 k~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i-~~~l~---------------------------------- 409 (775)
T TIGR00763 365 KSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRI-IQGLK---------------------------------- 409 (775)
T ss_pred HHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchH-HHHHH----------------------------------
Confidence 9999999999999988654221 1222221110 00000
Q ss_pred cCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceee
Q psy2392 308 EKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387 (1165)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1165)
T Consensus 410 -------------------------------------------------------------------------------- 409 (775)
T TIGR00763 410 -------------------------------------------------------------------------------- 409 (775)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccC---ceeeee
Q psy2392 388 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEG---TTVNTK 464 (1165)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg---~~v~~~ 464 (1165)
.| ...+.|||||||||+++..++ + ..+.||.++|. ......
T Consensus 410 ------------------------~~---~~~~~villDEidk~~~~~~~----~-----~~~aLl~~ld~~~~~~f~d~ 453 (775)
T TIGR00763 410 ------------------------KA---KTKNPLFLLDEIDKIGSSFRG----D-----PASALLEVLDPEQNNAFSDH 453 (775)
T ss_pred ------------------------Hh---CcCCCEEEEechhhcCCccCC----C-----HHHHHHHhcCHHhcCccccc
Confidence 00 113469999999999965322 2 23478888884 223323
Q ss_pred c--eeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCC---eeEe
Q psy2392 465 Y--GIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI---KIEF 539 (1165)
Q Consensus 465 ~--~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i---~l~~ 539 (1165)
| ..++.++++||+|+ +.+..+.|+|++||. +|+|++|+.++..+|++ ..+..++ ++..|+ .+.+
T Consensus 454 ~~~~~~d~s~v~~I~Tt----N~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~---~~l~~~~---~~~~~l~~~~~~~ 522 (775)
T TIGR00763 454 YLDVPFDLSKVIFIATA----NSIDTIPRPLLDRME-VIELSGYTEEEKLEIAK---KYLIPKA---LEDHGLKPDELKI 522 (775)
T ss_pred cCCceeccCCEEEEEec----CCchhCCHHHhCCee-EEecCCCCHHHHHHHHH---HHHHHHH---HHHcCCCcceEEE
Confidence 2 25677899999885 456789999999997 47999999999999996 4444333 333444 6899
Q ss_pred CHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCC-C--------eeEEcccccccccccCcccccccccc
Q psy2392 540 VDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN-I--------SLLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 540 ~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~-~--------~~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
+++++..|++ +|. ...|+|.|++.+++++...++.... . .+.|+.+.+.+.++..-...+ +.
T Consensus 523 ~~~~l~~i~~-~~~-----~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~~~~~~--~~- 593 (775)
T TIGR00763 523 TDEALLLLIK-YYT-----REAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKPVFTYE--RA- 593 (775)
T ss_pred CHHHHHHHHH-hcC-----hhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCccccccc--hh-
Confidence 9999999998 454 4799999999999999888776442 1 168888888888875443333 11
Q ss_pred cccccccCcceeeeecCC
Q psy2392 611 SGMEKFQGTTILSVRRGN 628 (1165)
Q Consensus 611 ~~~~~~~gt~~~aLaRG~ 628 (1165)
......+-+.+||-..
T Consensus 594 --~~~~~~G~v~gla~~~ 609 (775)
T TIGR00763 594 --YEVTPPGVVMGLAWTP 609 (775)
T ss_pred --ccCCCCeEEEEEEEeC
Confidence 1122344555666543
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-22 Score=222.17 Aligned_cols=107 Identities=29% Similarity=0.365 Sum_probs=82.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||||++.+. .|+.|||.||.+++.. ...+|+|+.| .+.|+|++|+.|
T Consensus 105 ~tiLflDEIHRfnK~-------------QQD~lLp~vE~G~iil--IGATTENPsF------------~ln~ALlSR~~v 157 (436)
T COG2256 105 RTILFLDEIHRFNKA-------------QQDALLPHVENGTIIL--IGATTENPSF------------ELNPALLSRARV 157 (436)
T ss_pred ceEEEEehhhhcChh-------------hhhhhhhhhcCCeEEE--EeccCCCCCe------------eecHHHhhhhhe
Confidence 469999999999987 8999999999887665 6667777666 799999999999
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
. +|+||+.+|+.++|+ +++..... -| .+..+.++++|++.|+..+-..-|.+.|
T Consensus 158 f-~lk~L~~~di~~~l~---ra~~~~~r-gl--~~~~~~i~~~a~~~l~~~s~GD~R~aLN 211 (436)
T COG2256 158 F-ELKPLSSEDIKKLLK---RALLDEER-GL--GGQIIVLDEEALDYLVRLSNGDARRALN 211 (436)
T ss_pred e-eeecCCHHHHHHHHH---HHHhhhhc-CC--CcccccCCHHHHHHHHHhcCchHHHHHH
Confidence 6 799999999999999 22222211 11 2234568999999999987655444444
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=236.47 Aligned_cols=276 Identities=19% Similarity=0.266 Sum_probs=197.9
Q ss_pred cccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHH
Q psy2392 160 TELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 160 t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
..+||.....+..++.+..+.|+++++|++.+|+.|.+.+....+ . .. .....++|+||||||||++++.+|
T Consensus 299 ~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~---~-~~----~~g~~i~l~GppG~GKTtl~~~ia 370 (784)
T PRK10787 299 VQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSR---V-NK----IKGPILCLVGPPGVGKTSLGQSIA 370 (784)
T ss_pred HhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh---c-cc----CCCceEEEECCCCCCHHHHHHHHH
Confidence 468998888888999999999999999999999999987764211 1 11 123579999999999999999999
Q ss_pred HHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCc
Q psy2392 240 KLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE 319 (1165)
Q Consensus 240 ~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 319 (1165)
+.++.+|++++++...+. .++.+. .+.
T Consensus 371 ~~l~~~~~~i~~~~~~d~-----------~~i~g~--------------------------------~~~---------- 397 (784)
T PRK10787 371 KATGRKYVRMALGGVRDE-----------AEIRGH--------------------------------RRT---------- 397 (784)
T ss_pred HHhCCCEEEEEcCCCCCH-----------HHhccc--------------------------------hhc----------
Confidence 999999999997764321 111110 000
Q ss_pred CcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHH
Q psy2392 320 NNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEE 399 (1165)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1165)
+ .++.+| .+.+
T Consensus 398 ----------------------------------~-~g~~~G------~~~~---------------------------- 408 (784)
T PRK10787 398 ----------------------------------Y-IGSMPG------KLIQ---------------------------- 408 (784)
T ss_pred ----------------------------------c-CCCCCc------HHHH----------------------------
Confidence 0 000011 0000
Q ss_pred HHhhcChhHHHHHHHhhh-ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCc---eeeeece--eecCceE
Q psy2392 400 ANKLLNEDEIQQKAINNV-EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT---TVNTKYG--IIKTDHI 473 (1165)
Q Consensus 400 ~~~~~~~~~~~~~a~~~~-~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~---~v~~~~~--~~~t~~i 473 (1165)
++..+ ..+.|+|||||||+.+..++ ..+..||+++|.. .+...|. ..+.+++
T Consensus 409 -------------~l~~~~~~~~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 409 -------------KMAKVGVKNPLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred -------------HHHhcCCCCCEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 00111 13569999999999876332 1456899999853 3333443 5688999
Q ss_pred EEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 474 LFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 474 lfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
+||||.+ ...+.|+|++||.+ |.|.+|+.+++.+|++ ..+..++.+.....+..+.++++++++|++ +|.
T Consensus 467 ~~i~TaN-----~~~i~~aLl~R~~i-i~~~~~t~eek~~Ia~---~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt 536 (784)
T PRK10787 467 MFVATSN-----SMNIPAPLLDRMEV-IRLSGYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIR-YYT 536 (784)
T ss_pred EEEEcCC-----CCCCCHHHhcceee-eecCCCCHHHHHHHHH---HhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCC
Confidence 9999754 34699999999975 6999999999999996 555533333345666789999999999997 665
Q ss_pred ccccCCccCcchhHHHHHHHHHHhhcccCC----CeeEEcccccccccccCcc
Q psy2392 554 INERTENIGARRLYTAMEKLLEEVSFNSNN----ISLLVDADYVNSRLGDLSI 602 (1165)
Q Consensus 554 ~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~----~~~~i~~~~v~~~~~~~~~ 602 (1165)
..+|||.|++.|++++.......-. ..+.|+.+.+.+.++...-
T Consensus 537 -----~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~~ 584 (784)
T PRK10787 537 -----REAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred -----cccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCcc
Confidence 5899999999999998877654321 2288999999999986543
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-20 Score=222.68 Aligned_cols=273 Identities=20% Similarity=0.252 Sum_probs=207.2
Q ss_pred cccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHH
Q psy2392 160 TELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 160 t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
..+||..-..+..++.+..+.|+++..|.+++|+.|.+.+...-+. ... +..-+||+||||||||+|++.+|
T Consensus 300 l~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~----~~~----kGpILcLVGPPGVGKTSLgkSIA 371 (782)
T COG0466 300 LDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT----KKL----KGPILCLVGPPGVGKTSLGKSIA 371 (782)
T ss_pred HhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh----ccC----CCcEEEEECCCCCCchhHHHHHH
Confidence 4689999988999999999999999999999999999988754222 111 22589999999999999999999
Q ss_pred HHhCCCceEEecccccc--------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCC
Q psy2392 240 KLSNAPFIKIEATKFTE--------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSN 311 (1165)
Q Consensus 240 ~~l~~~~i~ld~s~~~~--------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 311 (1165)
+.++..|+++.-.-..+ ..|+|.-.+.+++.+...
T Consensus 372 ~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka------------------------------------- 414 (782)
T COG0466 372 KALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA------------------------------------- 414 (782)
T ss_pred HHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh-------------------------------------
Confidence 99999999998765443 134444433322222211
Q ss_pred CccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHH
Q psy2392 312 LDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREA 391 (1165)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1165)
T Consensus 415 -------------------------------------------------------------------------------- 414 (782)
T COG0466 415 -------------------------------------------------------------------------------- 414 (782)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccC---ceeeeece--
Q psy2392 392 IKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEG---TTVNTKYG-- 466 (1165)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg---~~v~~~~~-- 466 (1165)
-..+.+++||||||+..+..+ |.++ +||.++|- ..++..|-
T Consensus 415 -------------------------~~~NPv~LLDEIDKm~ss~rG----DPaS-----ALLEVLDPEQN~~F~DhYLev 460 (782)
T COG0466 415 -------------------------GVKNPVFLLDEIDKMGSSFRG----DPAS-----ALLEVLDPEQNNTFSDHYLEV 460 (782)
T ss_pred -------------------------CCcCCeEEeechhhccCCCCC----ChHH-----HHHhhcCHhhcCchhhccccC
Confidence 114679999999999877433 4443 79999984 34444554
Q ss_pred eecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHH
Q psy2392 467 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR 546 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~ 546 (1165)
..+-++++||||.+ ....+.+.|+-||.+ +++..+++++-.+|.+ +.|+.++.+......-++.|+|+|+..
T Consensus 461 ~yDLS~VmFiaTAN----sl~tIP~PLlDRMEi-I~lsgYt~~EKl~IAk---~~LiPk~~~~~gL~~~el~i~d~ai~~ 532 (782)
T COG0466 461 PYDLSKVMFIATAN----SLDTIPAPLLDRMEV-IRLSGYTEDEKLEIAK---RHLIPKQLKEHGLKKGELTITDEAIKD 532 (782)
T ss_pred ccchhheEEEeecC----ccccCChHHhcceee-eeecCCChHHHHHHHH---HhcchHHHHHcCCCccceeecHHHHHH
Confidence 55778999999953 344577789999987 4999999999999997 677776655555555679999999999
Q ss_pred HHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEcccccccccccCccccc
Q psy2392 547 LAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYVNSRLGDLSINED 605 (1165)
Q Consensus 547 la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~v~~~~~~~~~~~d 605 (1165)
|++.... ..|.|.|.+.|.+++.....+.-... +.||...+.+.|+......+
T Consensus 533 iI~~YTR------EAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~f~~~ 589 (782)
T COG0466 533 IIRYYTR------EAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPVFRYG 589 (782)
T ss_pred HHHHHhH------hhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcccCcc
Confidence 9998766 79999999999998887766544332 58898889998887654444
|
|
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=215.35 Aligned_cols=152 Identities=29% Similarity=0.412 Sum_probs=117.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC-CCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHH
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN-APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 296 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~-~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1165)
.+++|||||||||||.+||.|.+.|+ .+--.++..++.++ |||+++ ..+|+||..|...+
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~K-YVGeSE-~NvR~LFaDAEeE~----------------- 316 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNK-YVGESE-ENVRKLFADAEEEQ----------------- 316 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHH-hhcccH-HHHHHHHHhHHHHH-----------------
Confidence 37999999999999999999999996 45577899999887 999994 55999998741111
Q ss_pred HHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhc
Q psy2392 297 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 376 (1165)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1165)
.+-|. ++
T Consensus 317 ------------------------------------r~~g~---------------------~S---------------- 323 (744)
T KOG0741|consen 317 ------------------------------------RRLGA---------------------NS---------------- 323 (744)
T ss_pred ------------------------------------HhhCc---------------------cC----------------
Confidence 11110 01
Q ss_pred CCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccc
Q psy2392 377 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 456 (1165)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~ 456 (1165)
.--||++||||.||+++.+..+...-++.|.++||.-|
T Consensus 324 ------------------------------------------gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKm 361 (744)
T KOG0741|consen 324 ------------------------------------------GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKM 361 (744)
T ss_pred ------------------------------------------CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhc
Confidence 12499999999999998875555555678999999999
Q ss_pred cCceeeeeceeecCceEEEEEeCCcccCCCCCCc-hhhh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 457 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 457 Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~-pel~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|| +-.-+|||+|+.+ +..|++ .+|+ |||.+.+++.-+++.-..|||+
T Consensus 362 DG--------VeqLNNILVIGMT-----NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~ 411 (744)
T KOG0741|consen 362 DG--------VEQLNNILVIGMT-----NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILK 411 (744)
T ss_pred cc--------HHhhhcEEEEecc-----CchhhHHHHhcCCCceEEEEEEeCCCccCceEEEE
Confidence 97 2356799999874 344554 4555 8999999999999999888884
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-21 Score=211.50 Aligned_cols=158 Identities=25% Similarity=0.281 Sum_probs=116.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC-CchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD-LIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~-l~pel~~R~ 497 (1165)
...|+||||||++++.+++ .|||.+|.+. |++|+++ +.+||. ++.+|++|+
T Consensus 222 rkTilFiDEiHRFNksQQD-------------~fLP~VE~G~------------I~lIGAT---TENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQD-------------TFLPHVENGD------------ITLIGAT---TENPSFQLNAALLSRC 273 (554)
T ss_pred ceeEEEeHHhhhhhhhhhh-------------cccceeccCc------------eEEEecc---cCCCccchhHHHHhcc
Confidence 4789999999999998665 8999999765 4577764 477876 899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+++ .|++|+.+.+..||......|.+-.+.--...+-.+.+++.++++|+..+ .++||+..+.+|..+...
T Consensus 274 ~Vf-vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~ls--------dGDaR~aLN~Lems~~m~ 344 (554)
T KOG2028|consen 274 RVF-VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLS--------DGDARAALNALEMSLSMF 344 (554)
T ss_pred cee-EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhc--------CchHHHHHHHHHHHHHHH
Confidence 997 69999999999999643333322111000112223467899999999877 689999999999886533
Q ss_pred hcccCCCe-eEEcccccccccccCccccc---------cccccccc
Q psy2392 578 SFNSNNIS-LLVDADYVNSRLGDLSINED---------LSRYDSGM 613 (1165)
Q Consensus 578 ~~~~~~~~-~~i~~~~v~~~~~~~~~~~d---------ls~~i~~~ 613 (1165)
....-... +.++.+.|++.++....-+| +|+|.++|
T Consensus 345 ~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSm 390 (554)
T KOG2028|consen 345 CTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSM 390 (554)
T ss_pred HhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhh
Confidence 33222112 78999999999988766666 77888877
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-20 Score=234.20 Aligned_cols=316 Identities=20% Similarity=0.269 Sum_probs=202.7
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhh--hhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKV--RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRN 104 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~R--R~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~ 104 (1165)
.++.+.+||||+.-+.- |+|+.| | |. ..+.++.|+.++-..||+.....+.-.....+..+++.++.|..
T Consensus 311 ~~~~vivI~atn~~~~l-----d~al~r~gR--fd-~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 311 GRGRVIVIGATNRPDAL-----DPALRRPGR--FD-REIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred cCCCEEEEeecCChhhc-----CHHHhCchh--cc-EEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCH
Confidence 46889999999876543 899998 7 98 67779999999999999954433321112446667777766654
Q ss_pred CCCchhH-HHHHhhhhhhhhhhccCCCCccCccccccc-ccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHHhc
Q psy2392 105 DRTLRRL-EAMLLTANRETTLIITGNGDVLEPENGIGA-IGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELD 182 (1165)
Q Consensus 105 ~r~lPDk-alld~a~a~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~L~ 182 (1165)
-|. ++..+++.......+.........+..... +....+.......++... .+..+.+ ...+....-.
T Consensus 383 ----adl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v---~ps~~~~---~~~~~~~~~~ 452 (733)
T TIGR01243 383 ----ADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMV---EPSAIRE---VLVEVPNVRW 452 (733)
T ss_pred ----HHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhc---cccccch---hhccccccch
Confidence 243 223333322222111100000000000000 000000000111111111 1111000 0011112224
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+..+.++..+....+.. .|.++||+||||||||++|+++|.+++.+|+.++++++.++ |+|+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~-~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~-~vGe 530 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR-PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK-WVGE 530 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc-ccCc
Confidence 589999999999999998766665554433221 35789999999999999999999999999999999998875 9998
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|..+
T Consensus 531 s-e~~i~~~f~~A------------------------------------------------------------------- 542 (733)
T TIGR01243 531 S-EKAIREIFRKA------------------------------------------------------------------- 542 (733)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 45577777652
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 543 -----------------------------------------------------------------------~~--~~p~i 549 (733)
T TIGR01243 543 -----------------------------------------------------------------------RQ--AAPAI 549 (733)
T ss_pred -----------------------------------------------------------------------Hh--cCCEE
Confidence 00 14789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
|||||||.+++.+....... ..+.+.+.||..++|- ...+++++|+++ +.|+.+.|+++ |||+..
T Consensus 550 ifiDEid~l~~~r~~~~~~~-~~~~~~~~lL~~ldg~--------~~~~~v~vI~aT----n~~~~ld~allRpgRfd~~ 616 (733)
T TIGR01243 550 IFFDEIDAIAPARGARFDTS-VTDRIVNQLLTEMDGI--------QELSNVVVIAAT----NRPDILDPALLRPGRFDRL 616 (733)
T ss_pred EEEEChhhhhccCCCCCCcc-HHHHHHHHHHHHhhcc--------cCCCCEEEEEeC----CChhhCCHhhcCCCccceE
Confidence 99999999998765422222 2344667889888873 235678899885 67999999998 699999
Q ss_pred EecCCCCHHHHHHHHh
Q psy2392 501 VELDSLSISDFTRIMT 516 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~ 516 (1165)
+.++.++.++..+|++
T Consensus 617 i~v~~Pd~~~R~~i~~ 632 (733)
T TIGR01243 617 ILVPPPDEEARKEIFK 632 (733)
T ss_pred EEeCCcCHHHHHHHHH
Confidence 9999999999999984
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-22 Score=207.18 Aligned_cols=80 Identities=38% Similarity=0.678 Sum_probs=69.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccCCCCC---------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKPSD--------- 488 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~~p~~--------- 488 (1165)
+.+|||||||||++++ .+.+.|+|+++||+.||+++|++.++..+| .++++|++||+||+|.......
T Consensus 68 ~~gVVllDEidKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~ 145 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIE 145 (171)
T ss_dssp HHTEEEEETGGGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCH
T ss_pred chhhhhhHHHhhcccc--ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccH
Confidence 5679999999999998 445789999999999999999999998887 9999999999999998543322
Q ss_pred --------------CchhhhCCCCee
Q psy2392 489 --------------LIPELQGRFPIR 500 (1165)
Q Consensus 489 --------------l~pel~~R~~~~ 500 (1165)
|.|||+||||++
T Consensus 146 ~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 146 QEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 999999999974
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.4e-21 Score=212.66 Aligned_cols=183 Identities=20% Similarity=0.353 Sum_probs=153.2
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
-|++|.|..+||+.|.+++..++....++.+.+-+ .+++|++||||+|||+|||++|.+++..|+.++.+.++++ |.
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrP--WkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK-wR 286 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRP--WKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK-WR 286 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccc--cceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh-hc
Confidence 35899999999999999999887777777766543 5999999999999999999999999999999999999999 99
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|++ +.++|-||+.|+..
T Consensus 287 GeS-EKlvRlLFemARfy-------------------------------------------------------------- 303 (491)
T KOG0738|consen 287 GES-EKLVRLLFEMARFY-------------------------------------------------------------- 303 (491)
T ss_pred cch-HHHHHHHHHHHHHh--------------------------------------------------------------
Confidence 999 67899999887333
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
.+
T Consensus 304 ------------------------------------------------------------------------------AP 305 (491)
T KOG0738|consen 304 ------------------------------------------------------------------------------AP 305 (491)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 46
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
.+|||||||.|++.+++.+..++|+. |..+||-.|+|..- ......++||.+.. +-|||+..+|++||.-|
T Consensus 306 StIFiDEIDslcs~RG~s~EHEaSRR-vKsELLvQmDG~~~-----t~e~~k~VmVLAAT---N~PWdiDEAlrRRlEKR 376 (491)
T KOG0738|consen 306 STIFIDEIDSLCSQRGGSSEHEASRR-VKSELLVQMDGVQG-----TLENSKVVMVLAAT---NFPWDIDEALRRRLEKR 376 (491)
T ss_pred ceeehhhHHHHHhcCCCccchhHHHH-HHHHHHHHhhcccc-----ccccceeEEEEecc---CCCcchHHHHHHHHhhh
Confidence 79999999999999887666777775 99999999998542 23335666666543 56999999999999999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
+.++-++.+....+++
T Consensus 377 IyIPLP~~~~R~~Li~ 392 (491)
T KOG0738|consen 377 IYIPLPDAEARSALIK 392 (491)
T ss_pred eeeeCCCHHHHHHHHH
Confidence 8887778777766666
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.4e-21 Score=201.70 Aligned_cols=173 Identities=27% Similarity=0.441 Sum_probs=137.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+||++||+.-+..+... + ++.....|.|+++||+||||||||++|++||++.+.||+.+.++++... |||.
T Consensus 121 ddViGqEeAK~kcrli~~yL-e----nPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe-hVGd 194 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYL-E----NPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE-HVGD 194 (368)
T ss_pred hhhhchHHHHHHHHHHHHHh-h----ChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH-Hhhh
Confidence 58999999997644433211 1 1123345678999999999999999999999999999999999999875 8888
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ...++++++.+
T Consensus 195 g-ar~Ihely~rA------------------------------------------------------------------- 206 (368)
T COG1223 195 G-ARRIHELYERA------------------------------------------------------------------- 206 (368)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 7 56677777663
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
... .+||
T Consensus 207 -----------------------------------------------------------------------~~~--aPci 213 (368)
T COG1223 207 -----------------------------------------------------------------------RKA--APCI 213 (368)
T ss_pred -----------------------------------------------------------------------Hhc--CCeE
Confidence 111 4899
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeE
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 501 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v 501 (1165)
|||||+|.|+-.+..++ .+|+|- +.++||+-|||.. ...-+++||++ ++|.-|+|+.++||...|
T Consensus 214 vFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDgi~--------eneGVvtIaaT----N~p~~LD~aiRsRFEeEI 279 (368)
T COG1223 214 VFIDELDAIALDRRYQELRGDVSE--IVNALLTELDGIK--------ENEGVVTIAAT----NRPELLDPAIRSRFEEEI 279 (368)
T ss_pred EEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccCcc--------cCCceEEEeec----CChhhcCHHHHhhhhhee
Confidence 99999999997765433 467764 7789999999843 33457789984 789999999999999999
Q ss_pred ecCCCCHHHHHHHHh
Q psy2392 502 ELDSLSISDFTRIMT 516 (1165)
Q Consensus 502 ~~~~L~~~~l~~Il~ 516 (1165)
+|.-++.++...||.
T Consensus 280 EF~LP~~eEr~~ile 294 (368)
T COG1223 280 EFKLPNDEERLEILE 294 (368)
T ss_pred eeeCCChHHHHHHHH
Confidence 999999999999995
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-22 Score=206.30 Aligned_cols=80 Identities=38% Similarity=0.678 Sum_probs=70.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCCCCCC---------
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKPSD--------- 1086 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~~p~d--------- 1086 (1165)
+.||||+|||||+..+ ...+.|+|+++||+.||+++|++.++..+| .++|+|++|||+|+|.......
T Consensus 68 ~~gVVllDEidKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~ 145 (171)
T PF07724_consen 68 EGGVVLLDEIDKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIE 145 (171)
T ss_dssp HHTEEEEETGGGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCH
T ss_pred chhhhhhHHHhhcccc--ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccH
Confidence 5689999999999987 346789999999999999999999999888 9999999999999999644433
Q ss_pred --------------CchhhhccCCeE
Q psy2392 1087 --------------LIPELQGRFPIR 1098 (1165)
Q Consensus 1087 --------------l~pel~gR~~i~ 1098 (1165)
|.|||+||||++
T Consensus 146 ~~~~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 146 QEQEEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp HHHCHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHHHHcCCCHHHHccCCcC
Confidence 899999999974
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >KOG0736|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=220.08 Aligned_cols=315 Identities=18% Similarity=0.247 Sum_probs=196.5
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDR 106 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~~r 106 (1165)
.++...+||+|+. +++=|+.-++-.|. .+.++.||.++-++||+.+....+--...-++..+. |.++=
T Consensus 530 ~~~~~ivv~t~~s------~~~lp~~i~~~f~~--ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~----~t~gf 597 (953)
T KOG0736|consen 530 SCPPVIVVATTSS------IEDLPADIQSLFLH--EIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLAR----KTSGF 597 (953)
T ss_pred CCCceEEEEeccc------cccCCHHHHHhhhh--hccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH----hcCCC
Confidence 5678888998886 44456666553333 356999999999999998765444211123333333 23332
Q ss_pred CchhHH-HH----HhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHHh
Q psy2392 107 TLRRLE-AM----LLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSEL 181 (1165)
Q Consensus 107 ~lPDka-ll----d~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~L 181 (1165)
.+-|.. +. ..++.++...... ......-+..+..- .....++..++.+++...--. +..-.-.+...-
T Consensus 598 s~~~L~~l~~~~s~~~~~~i~~~~l~-g~~~~~~~~~~~~~-~~~l~~edf~kals~~~~~fs-----~aiGAPKIPnV~ 670 (953)
T KOG0736|consen 598 SFGDLEALVAHSSLAAKTRIKNKGLA-GGLQEEDEGELCAA-GFLLTEEDFDKALSRLQKEFS-----DAIGAPKIPNVS 670 (953)
T ss_pred CHHHHHHHhcCchHHHHHHHHhhccc-ccchhccccccccc-cceecHHHHHHHHHHHHHhhh-----hhcCCCCCCccc
Confidence 223331 11 1112222111000 00000000000000 011111222233221100000 000000122334
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccC-CCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITG-PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~-~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
+++|.|.+++|..|.+.|..+.+++.|+. ++++. .++|||||||||||.+|||+|.++..+|+.+...++.+. |+
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkR---SGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM-YV 746 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKR---SGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM-YV 746 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhcccccc---ceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH-Hh
Confidence 67999999999999999999888888765 35543 899999999999999999999999999999999999987 99
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|+++ ..+|++|+.|
T Consensus 747 GqSE-~NVR~VFerA----------------------------------------------------------------- 760 (953)
T KOG0736|consen 747 GQSE-ENVREVFERA----------------------------------------------------------------- 760 (953)
T ss_pred cchH-HHHHHHHHHh-----------------------------------------------------------------
Confidence 9994 4589998773
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
.+ ..+
T Consensus 761 -------------------------------------------------------------------------R~--A~P 765 (953)
T KOG0736|consen 761 -------------------------------------------------------------------------RS--AAP 765 (953)
T ss_pred -------------------------------------------------------------------------hc--cCC
Confidence 11 158
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||+||+|.+++.+..++....-.+.|..+||.-+||-.-. ++..+.+|+| +++|.-++|+|+ |||+
T Consensus 766 CVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~------~s~~VFViGA----TNRPDLLDpALLRPGRFD 835 (953)
T KOG0736|consen 766 CVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS------SSQDVFVIGA----TNRPDLLDPALLRPGRFD 835 (953)
T ss_pred eEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC------CCCceEEEec----CCCccccChhhcCCCccc
Confidence 999999999999998764322223456778899999984321 3445666666 478999999998 8999
Q ss_pred eeEecCCCCHHHH-HHHH
Q psy2392 499 IRVELDSLSISDF-TRIM 515 (1165)
Q Consensus 499 ~~v~~~~L~~~~l-~~Il 515 (1165)
-.|++.+-...+- .+||
T Consensus 836 KLvyvG~~~d~esk~~vL 853 (953)
T KOG0736|consen 836 KLVYVGPNEDAESKLRVL 853 (953)
T ss_pred eeEEecCCccHHHHHHHH
Confidence 9999988765543 3455
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.83 E-value=2e-20 Score=199.71 Aligned_cols=191 Identities=24% Similarity=0.398 Sum_probs=124.8
Q ss_pred HHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 766 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 766 ~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.+||+.| ++++||++++..+...+....++. ....|+||||||||||||||+.+|++++.+|.
T Consensus 14 l~~~lRP~~L-----~efiGQ~~l~~~l~i~i~aa~~r~---------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 14 LAERLRPKSL-----DEFIGQEHLKGNLKILIRAAKKRG---------EALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp HHHHTS-SSC-----CCS-S-HHHHHHHHHHHHHHHCTT---------S---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred hHHhcCCCCH-----HHccCcHHHHhhhHHHHHHHHhcC---------CCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 4468899887 899999999999887776432111 12479999999999999999999999999999
Q ss_pred EEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHH
Q psy2392 846 KIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925 (1165)
Q Consensus 846 ~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~ 925 (1165)
.++++.+..+ +. +..++
T Consensus 80 ~~sg~~i~k~-------~d-l~~il------------------------------------------------------- 96 (233)
T PF05496_consen 80 ITSGPAIEKA-------GD-LAAIL------------------------------------------------------- 96 (233)
T ss_dssp EEECCC--SC-------HH-HHHHH-------------------------------------------------------
T ss_pred eccchhhhhH-------HH-HHHHH-------------------------------------------------------
Confidence 8888653222 11 11110
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
T Consensus 97 -------------------------------------------------------------------------------- 96 (233)
T PF05496_consen 97 -------------------------------------------------------------------------------- 96 (233)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--------eccCceEEEEecC
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--------IIKTDHILFIASG 1077 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--------~~~t~~ilfI~~g 1077 (1165)
...+++-|+||||||++.+. +|..|||.||+..+..-.| .++-.+...|+|+
T Consensus 97 -------~~l~~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 97 -------TNLKEGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp -------HT--TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred -------HhcCCCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 00114569999999999998 9999999999987754222 3333445555554
Q ss_pred CCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1078 AFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1078 af~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++.-+.++|..||.+...|+.++.+||.+|++..- .. .++.+++++..+||+.|-
T Consensus 157 ----Tr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a-----------~~--l~i~i~~~~~~~Ia~rsr 212 (233)
T PF05496_consen 157 ----TRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSA-----------RI--LNIEIDEDAAEEIARRSR 212 (233)
T ss_dssp ----SSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCC-----------HC--TT-EE-HHHHHHHHHCTT
T ss_pred ----ccccccchhHHhhcceecchhcCCHHHHHHHHHHHH-----------HH--hCCCcCHHHHHHHHHhcC
Confidence 366678899999999999999999999999998221 12 344888999999998764
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=193.93 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=80.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec--------eeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~--------~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
++.|+||||||++++. +|..|||.||++.++.-. ..++-.+...|+|+ ++..-+.
T Consensus 101 ~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT----Tr~g~ls 163 (233)
T PF05496_consen 101 EGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT----TRAGLLS 163 (233)
T ss_dssp TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE----SSGCCTS
T ss_pred CCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee----ccccccc
Confidence 4679999999999988 677999999998875422 13333444556553 4566788
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
+.|+.||.+...|+.++.+++.+|++.. ..-..+.+++++..+||..+ .+--|-.++++
T Consensus 164 ~pLrdRFgi~~~l~~Y~~~el~~Iv~r~-------------a~~l~i~i~~~~~~~Ia~rs--------rGtPRiAnrll 222 (233)
T PF05496_consen 164 SPLRDRFGIVLRLEFYSEEELAKIVKRS-------------ARILNIEIDEDAAEEIARRS--------RGTPRIANRLL 222 (233)
T ss_dssp HCCCTTSSEEEE----THHHHHHHHHHC-------------CHCTT-EE-HHHHHHHHHCT--------TTSHHHHHHHH
T ss_pred hhHHhhcceecchhcCCHHHHHHHHHHH-------------HHHhCCCcCHHHHHHHHHhc--------CCChHHHHHHH
Confidence 9999999999999999999999999522 12345688999999999877 55678888888
Q ss_pred HHH
Q psy2392 571 EKL 573 (1165)
Q Consensus 571 e~~ 573 (1165)
+++
T Consensus 223 ~rv 225 (233)
T PF05496_consen 223 RRV 225 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-20 Score=200.32 Aligned_cols=180 Identities=23% Similarity=0.377 Sum_probs=148.7
Q ss_pred HhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccc
Q psy2392 778 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857 (1165)
Q Consensus 778 ~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gy 857 (1165)
.-|.+|.|.+.|+++|.+++..+++...++.+.+.+ .++||||||||+||++||+++|.+.+..|+.++.|+++++ |
T Consensus 130 VkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~P--wrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK-W 206 (439)
T KOG0739|consen 130 VKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKP--WRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-W 206 (439)
T ss_pred CchhhhccchhHHHHHHhheeecccchhhhcCCCCc--ceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH-H
Confidence 356899999999999999999999999998887654 5899999999999999999999999999999999999999 9
Q ss_pred cccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCC
Q psy2392 858 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld 937 (1165)
.|++ +.+++.||+.|+.+
T Consensus 207 mGES-EkLVknLFemARe~------------------------------------------------------------- 224 (439)
T KOG0739|consen 207 MGES-EKLVKNLFEMAREN------------------------------------------------------------- 224 (439)
T ss_pred hccH-HHHHHHHHHHHHhc-------------------------------------------------------------
Confidence 9999 67899998877333
Q ss_pred CeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy2392 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 1017 (1165)
Q Consensus 938 ~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 1017 (1165)
.
T Consensus 225 -------------------------------------------------------------------------------k 225 (439)
T KOG0739|consen 225 -------------------------------------------------------------------------------K 225 (439)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
+.||||||||.+++.++. +.++++|. ...++|--|-| -..+++-+|+.+++ +-||.|..++++||.-
T Consensus 226 PSIIFiDEiDslcg~r~e-nEseasRR-IKTEfLVQMqG-------VG~d~~gvLVLgAT----NiPw~LDsAIRRRFek 292 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSE-NESEASRR-IKTEFLVQMQG-------VGNDNDGVLVLGAT----NIPWVLDSAIRRRFEK 292 (439)
T ss_pred CcEEEeehhhhhccCCCC-CchHHHHH-HHHHHHHhhhc-------cccCCCceEEEecC----CCchhHHHHHHHHhhc
Confidence 689999999999988654 33455554 55566655665 34567888988875 4899999999999999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
|+.++-+.+....++++
T Consensus 293 RIYIPLPe~~AR~~MF~ 309 (439)
T KOG0739|consen 293 RIYIPLPEAHARARMFK 309 (439)
T ss_pred ceeccCCcHHHhhhhhe
Confidence 98877666665555544
|
|
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-20 Score=206.71 Aligned_cols=181 Identities=20% Similarity=0.375 Sum_probs=150.1
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|..+||+.|.+|+..++..+.++.+.+-+| +++|++||||||||.|||++|.+++..|+.++.+.++++ |-|+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPW--kgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK-wRGe 288 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPW--KGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK-WRGE 288 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhccccc--ceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh-hccc
Confidence 6899999999999999999988888888766544 899999999999999999999999999999999999997 9999
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +++++-||+.+
T Consensus 289 S-EKlvRlLFemA------------------------------------------------------------------- 300 (491)
T KOG0738|consen 289 S-EKLVRLLFEMA------------------------------------------------------------------- 300 (491)
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 9 78888888773
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
... .+++
T Consensus 301 -----------------------------------------------------------------------Rfy--APSt 307 (491)
T KOG0738|consen 301 -----------------------------------------------------------------------RFY--APST 307 (491)
T ss_pred -----------------------------------------------------------------------HHh--CCce
Confidence 011 3789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.|+.++.+.+..++|+ .|...||-.|||-.-+ ...+.++|+.+. ++-|+|++.+|+.||.-+|.
T Consensus 308 IFiDEIDslcs~RG~s~EHEaSR-RvKsELLvQmDG~~~t-----~e~~k~VmVLAA---TN~PWdiDEAlrRRlEKRIy 378 (491)
T KOG0738|consen 308 IFIDEIDSLCSQRGGSSEHEASR-RVKSELLVQMDGVQGT-----LENSKVVMVLAA---TNFPWDIDEALRRRLEKRIY 378 (491)
T ss_pred eehhhHHHHHhcCCCccchhHHH-HHHHHHHHHhhccccc-----cccceeEEEEec---cCCCcchHHHHHHHHhhhee
Confidence 99999999999988755555555 4888999999984322 233455665542 35699999999999999999
Q ss_pred cCCCCHHHHHHHHh
Q psy2392 503 LDSLSISDFTRIMT 516 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~ 516 (1165)
++-++.+....+++
T Consensus 379 IPLP~~~~R~~Li~ 392 (491)
T KOG0738|consen 379 IPLPDAEARSALIK 392 (491)
T ss_pred eeCCCHHHHHHHHH
Confidence 99899888877773
|
|
| >KOG2004|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-19 Score=211.21 Aligned_cols=250 Identities=24% Similarity=0.338 Sum_probs=193.7
Q ss_pred cccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHH
Q psy2392 160 TELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 160 t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
|.+||...+.++.++...++.|+++..|.+++|+.|.+.+... .++...+..-++|+||||+|||++|+.||
T Consensus 388 t~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~--------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA 459 (906)
T KOG2004|consen 388 TSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVG--------KLRGSVQGKILCFVGPPGVGKTSIAKSIA 459 (906)
T ss_pred HhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHH--------hhcccCCCcEEEEeCCCCCCcccHHHHHH
Confidence 6789999999999999999999999999999999999988764 22333334789999999999999999999
Q ss_pred HHhCCCceEEecccccc--------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCC
Q psy2392 240 KLSNAPFIKIEATKFTE--------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSN 311 (1165)
Q Consensus 240 ~~l~~~~i~ld~s~~~~--------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 311 (1165)
+.|+..|+|++-.-+.+ ..|+|.-.+.++..+-..
T Consensus 460 ~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v------------------------------------- 502 (906)
T KOG2004|consen 460 RALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV------------------------------------- 502 (906)
T ss_pred HHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhh-------------------------------------
Confidence 99999999998765544 135555544433322211
Q ss_pred CccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHH
Q psy2392 312 LDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREA 391 (1165)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (1165)
T Consensus 503 -------------------------------------------------------------------------------- 502 (906)
T KOG2004|consen 503 -------------------------------------------------------------------------------- 502 (906)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCce---eeeec--e
Q psy2392 392 IKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTT---VNTKY--G 466 (1165)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~---v~~~~--~ 466 (1165)
--.+.+++||||||+....+ +|.+. +||.++|-.. +...| .
T Consensus 503 -------------------------~t~NPliLiDEvDKlG~g~q----GDPas-----ALLElLDPEQNanFlDHYLdV 548 (906)
T KOG2004|consen 503 -------------------------KTENPLILIDEVDKLGSGHQ----GDPAS-----ALLELLDPEQNANFLDHYLDV 548 (906)
T ss_pred -------------------------CCCCceEEeehhhhhCCCCC----CChHH-----HHHHhcChhhccchhhhcccc
Confidence 01467999999999985433 34433 7999998432 33334 4
Q ss_pred eecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHH
Q psy2392 467 IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR 546 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~ 546 (1165)
+++-+.++||||.+ .-..+.|.|+-||.+ |++..+..++-..|.. +.|+.|..+......-++.++++|+..
T Consensus 549 p~DLSkVLFicTAN----~idtIP~pLlDRMEv-IelsGYv~eEKv~IA~---~yLip~a~~~~gl~~e~v~is~~al~~ 620 (906)
T KOG2004|consen 549 PVDLSKVLFICTAN----VIDTIPPPLLDRMEV-IELSGYVAEEKVKIAE---RYLIPQALKDCGLKPEQVKISDDALLA 620 (906)
T ss_pred ccchhheEEEEecc----ccccCChhhhhhhhe-eeccCccHHHHHHHHH---HhhhhHHHHHcCCCHHhcCccHHHHHH
Confidence 77889999999954 334577889999987 4999999999999996 778877766555555567899999999
Q ss_pred HHHHHHhccccCCccCcchhHHHHHHHHHHhhcccC
Q psy2392 547 LAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSN 582 (1165)
Q Consensus 547 la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~ 582 (1165)
|++..+. ..|.|.|.+-||++...+.+...
T Consensus 621 lI~~Ycr------EaGVRnLqk~iekI~Rk~Al~vv 650 (906)
T KOG2004|consen 621 LIERYCR------EAGVRNLQKQIEKICRKVALKVV 650 (906)
T ss_pred HHHHHHH------HHhHHHHHHHHHHHHHHHHHHHH
Confidence 9887766 79999999999999988877543
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-19 Score=198.33 Aligned_cols=133 Identities=16% Similarity=0.232 Sum_probs=92.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcc-cCCCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-LAKPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~-~~~p~~l~pel~~R~ 497 (1165)
.+||+||||+|.+.+... ..+.+ ..+|+.|+..||.. ..++++|++|.-. +..-..++|+|.+||
T Consensus 122 ~ggVLfIDE~~~l~~~~~---~~~~~-~e~~~~L~~~me~~----------~~~~~vI~ag~~~~~~~~~~~np~L~sR~ 187 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDN---ERDYG-SEAIEILLQVMENQ----------RDDLVVIFAGYKDRMDKFYESNPGLSSRI 187 (287)
T ss_pred cCCEEEEEccchhccCCC---ccchH-HHHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhcCHHHHHhC
Confidence 468999999999975421 12233 34777899999862 3567888887421 111123569999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccC-cchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIG-ARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~G-AR~l~~~ie~~l~~ 576 (1165)
+..|.|++++.+++.+|+. .+++ ..+ ..+++++...+....... ...++.| ||.+++++++++..
T Consensus 188 ~~~i~F~~~t~~el~~I~~----~~l~-------~~~--~~l~~~~~~~L~~~i~~~-~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 188 ANHVDFPDYTPEELLQIAK----IMLE-------EQQ--YQLTPEAEKALLDYIKKR-MEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred CceEEcCCcCHHHHHHHHH----HHHH-------Hhc--CCCChhHHHHHHHHHHHh-CCCCCCccHHHHHHHHHHHHHH
Confidence 9999999999999999983 3332 223 356788777777765442 2224667 99999999999876
Q ss_pred hhc
Q psy2392 577 VSF 579 (1165)
Q Consensus 577 ~~~ 579 (1165)
.+.
T Consensus 254 ~~~ 256 (287)
T CHL00181 254 QAN 256 (287)
T ss_pred HHH
Confidence 544
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=221.55 Aligned_cols=250 Identities=21% Similarity=0.264 Sum_probs=176.9
Q ss_pred ccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEE
Q psy2392 743 GGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMI 822 (1165)
Q Consensus 743 ~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~ 822 (1165)
..........++..++++++.....+..++..+++.|+++++||+++++.+.+.+.....+. . ....++||+
T Consensus 282 ~~~~~~~~~~yl~~~~~ip~~~~~~~~~~~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~----~----~~~~~lll~ 353 (775)
T TIGR00763 282 SSSEFTVTRNYLDWLTDLPWGKYSKENLDLKRAKEILDEDHYGLKKVKERILEYLAVQKLRG----K----MKGPILCLV 353 (775)
T ss_pred CCchHHHHHHHHHHHHCCCCcccccchhhHHHHHHHhhhhcCChHHHHHHHHHHHHHHHhhc----C----CCCceEEEE
Confidence 34444566677888889888887667888999999999999999999999998876441111 1 113579999
Q ss_pred ccCCCChhHHHHHHHHHcCCCeEEEecCCcccc--------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHH
Q psy2392 823 GPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV--------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 894 (1165)
Q Consensus 823 GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~--------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~ 894 (1165)
||||||||++|+++|+.++.+|++++++.+... .|+|...+. +.+.|
T Consensus 354 GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~-i~~~l------------------------ 408 (775)
T TIGR00763 354 GPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGR-IIQGL------------------------ 408 (775)
T ss_pred CCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCch-HHHHH------------------------
Confidence 999999999999999999999999988654321 122222111 00000
Q ss_pred HHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhh
Q psy2392 895 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 974 (1165)
Q Consensus 895 ~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1165)
T Consensus 409 -------------------------------------------------------------------------------- 408 (775)
T TIGR00763 409 -------------------------------------------------------------------------------- 408 (775)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccc
Q psy2392 975 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 1054 (1165)
Q Consensus 975 ~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~ 1054 (1165)
+.| ...+.|||||||||+.+...+ + ....||.++
T Consensus 409 ----------------------------------~~~---~~~~~villDEidk~~~~~~~----~-----~~~aLl~~l 442 (775)
T TIGR00763 409 ----------------------------------KKA---KTKNPLFLLDEIDKIGSSFRG----D-----PASALLEVL 442 (775)
T ss_pred ----------------------------------HHh---CcCCCEEEEechhhcCCccCC----C-----HHHHHHHhc
Confidence 001 113469999999999864221 1 235788888
Q ss_pred cCc---cceeee--eeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHh
Q psy2392 1055 EGT---TVNTKY--GIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLA 1129 (1165)
Q Consensus 1055 Eg~---~v~~k~--~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~ 1129 (1165)
|.. .....| ..++..+++|||+.+ .++.+.|+|++||.+ ++|++|+.++..+|++ +.+..++.....
T Consensus 443 d~~~~~~f~d~~~~~~~d~s~v~~I~TtN----~~~~i~~~L~~R~~v-i~~~~~~~~e~~~I~~---~~l~~~~~~~~~ 514 (775)
T TIGR00763 443 DPEQNNAFSDHYLDVPFDLSKVIFIATAN----SIDTIPRPLLDRMEV-IELSGYTEEEKLEIAK---KYLIPKALEDHG 514 (775)
T ss_pred CHHhcCccccccCCceeccCCEEEEEecC----CchhCCHHHhCCeeE-EecCCCCHHHHHHHHH---HHHHHHHHHHcC
Confidence 852 222222 256778999998764 567899999999975 6999999999999998 445444433322
Q ss_pred hcCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1130 TEGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1130 ~egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
.....+.++++++.+|++ .|....|++|+-
T Consensus 515 l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~ 544 (775)
T TIGR00763 515 LKPDELKITDEALLLLIK-YYTREAGVRNLE 544 (775)
T ss_pred CCcceEEECHHHHHHHHH-hcChhcCChHHH
Confidence 222367999999999999 798888887753
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=192.27 Aligned_cols=173 Identities=28% Similarity=0.438 Sum_probs=137.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+||++||..-...+... .. +.....+.|+++|||||||||||++|+++|++.+.||+.+.++++... |||.
T Consensus 121 ddViGqEeAK~kcrli~~yL-en----Pe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe-hVGd 194 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYL-EN----PERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE-HVGD 194 (368)
T ss_pred hhhhchHHHHHHHHHHHHHh-hC----hHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH-Hhhh
Confidence 79999999987644333210 01 122234568999999999999999999999999999999999999988 9998
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ...+++++.+|.+.
T Consensus 195 g-ar~Ihely~rA~~~---------------------------------------------------------------- 209 (368)
T COG1223 195 G-ARRIHELYERARKA---------------------------------------------------------------- 209 (368)
T ss_pred H-HHHHHHHHHHHHhc----------------------------------------------------------------
Confidence 8 45688888776222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.++|
T Consensus 210 ----------------------------------------------------------------------------aPci 213 (368)
T COG1223 210 ----------------------------------------------------------------------------APCI 213 (368)
T ss_pred ----------------------------------------------------------------------------CCeE
Confidence 5789
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
|||||+|.|+-.+.-. --+|+|- +-++||.-++|.. ..+-+.+|||+ ++|.-|.|++.+||..-+
T Consensus 214 vFiDE~DAiaLdRryQelRGDVsE--iVNALLTelDgi~--------eneGVvtIaaT----N~p~~LD~aiRsRFEeEI 279 (368)
T COG1223 214 VFIDELDAIALDRRYQELRGDVSE--IVNALLTELDGIK--------ENEGVVTIAAT----NRPELLDPAIRSRFEEEI 279 (368)
T ss_pred EEehhhhhhhhhhhHHHhcccHHH--HHHHHHHhccCcc--------cCCceEEEeec----CChhhcCHHHHhhhhhee
Confidence 9999999999775421 1246554 6789999999732 44567899996 489999999999999999
Q ss_pred EcCCCCHHHHHHHHh
Q psy2392 1100 ELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1100 ~l~~l~~~~l~~il~ 1114 (1165)
+|+-++.++...||.
T Consensus 280 EF~LP~~eEr~~ile 294 (368)
T COG1223 280 EFKLPNDEERLEILE 294 (368)
T ss_pred eeeCCChHHHHHHHH
Confidence 999999999999988
|
|
| >KOG0739|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-19 Score=194.00 Aligned_cols=202 Identities=22% Similarity=0.357 Sum_probs=161.8
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
+.+|.|.+.|+++|.+++..+++.++++.+.|.+| .++||+||||+||++||+++|.+.+..|+.++.|+++++ |.|
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw--rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSK-WmG 208 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW--RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMG 208 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcc--eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHH-Hhc
Confidence 46889999999999999999999999998876544 899999999999999999999999999999999999997 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
++ +.+++.||+.+
T Consensus 209 ES-EkLVknLFemA------------------------------------------------------------------ 221 (439)
T KOG0739|consen 209 ES-EKLVKNLFEMA------------------------------------------------------------------ 221 (439)
T ss_pred cH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 99 67788888763
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.+ ..++
T Consensus 222 ------------------------------------------------------------------------Re--~kPS 227 (439)
T KOG0739|consen 222 ------------------------------------------------------------------------RE--NKPS 227 (439)
T ss_pred ------------------------------------------------------------------------Hh--cCCc
Confidence 01 1488
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeE
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 501 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v 501 (1165)
||||||||.+|.++.. +..+++|. +...||--|.| ...+++.+|+.+++ +-|+.|+.+++.||.-||
T Consensus 228 IIFiDEiDslcg~r~e-nEseasRR-IKTEfLVQMqG-------VG~d~~gvLVLgAT----NiPw~LDsAIRRRFekRI 294 (439)
T KOG0739|consen 228 IIFIDEIDSLCGSRSE-NESEASRR-IKTEFLVQMQG-------VGNDNDGVLVLGAT----NIPWVLDSAIRRRFEKRI 294 (439)
T ss_pred EEEeehhhhhccCCCC-CchHHHHH-HHHHHHHhhhc-------cccCCCceEEEecC----CCchhHHHHHHHHhhcce
Confidence 9999999999988765 34455554 55566666666 23467888988884 679999999999999999
Q ss_pred ecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 502 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 502 ~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
.++-+........++ +..-...-.+++..++.|+.....
T Consensus 295 YIPLPe~~AR~~MF~-------------lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 295 YIPLPEAHARARMFK-------------LHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred eccCCcHHHhhhhhe-------------eccCCCccccchhhHHHHHhhcCC
Confidence 887777766655553 122344556788888889887754
|
|
| >KOG2028|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-19 Score=196.52 Aligned_cols=114 Identities=21% Similarity=0.218 Sum_probs=84.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+|||||+++++. +|+.+||.+|.+.++. ++.+|+|+.| .|+.+|++||+
T Consensus 222 rkTilFiDEiHRFNks-------------QQD~fLP~VE~G~I~l--IGATTENPSF------------qln~aLlSRC~ 274 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKS-------------QQDTFLPHVENGDITL--IGATTENPSF------------QLNAALLSRCR 274 (554)
T ss_pred ceeEEEeHHhhhhhhh-------------hhhcccceeccCceEE--EecccCCCcc------------chhHHHHhccc
Confidence 4579999999999987 8889999999887665 5666666666 79999999999
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
++ .|++|+.+.+..||...-..|.+-.+.--...+-...+++.+|++|+.++-...+.+.|
T Consensus 275 Vf-vLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN 335 (554)
T KOG2028|consen 275 VF-VLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALN 335 (554)
T ss_pred ee-EeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHH
Confidence 97 59999999999999933333322111111112323467899999999888766665555
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-18 Score=191.24 Aligned_cols=133 Identities=19% Similarity=0.334 Sum_probs=93.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccC-CCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLA-KPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~-~p~~l~pel~~R~ 497 (1165)
.++|+||||||.+....+. + .....++.|++.+|.. +.++.+|++|..... ....++|+|.+||
T Consensus 105 ~~~VL~IDE~~~L~~~~~~----~-~~~~~i~~Ll~~~e~~----------~~~~~vila~~~~~~~~~~~~~p~L~sRf 169 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGEK----D-FGKEAIDTLVKGMEDN----------RNEFVLILAGYSDEMDYFLSLNPGLRSRF 169 (261)
T ss_pred cCCEEEEechhhhccCCcc----c-hHHHHHHHHHHHHhcc----------CCCEEEEecCCcchhHHHHhcChHHHhcc
Confidence 3689999999999743211 1 1233677899988863 355677887753222 2234789999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhcc--ccCCccCcchhHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN--ERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~--~~~~~~GAR~l~~~ie~~l~ 575 (1165)
+..|.|++++.+++.+|+. .+ +... .+.+++++++.|++.....- .....+.||.+++++|.++.
T Consensus 170 ~~~i~f~~~~~~el~~Il~----~~-------~~~~--~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 170 PISIDFPDYTVEELMEIAE----RM-------VKER--EYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred ceEEEECCCCHHHHHHHHH----HH-------HHHc--CCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 9999999999999999994 22 2223 34789999999987654321 12235679999999999887
Q ss_pred Hhhc
Q psy2392 576 EVSF 579 (1165)
Q Consensus 576 ~~~~ 579 (1165)
..+.
T Consensus 237 ~~~~ 240 (261)
T TIGR02881 237 RQAV 240 (261)
T ss_pred HHHH
Confidence 6543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >KOG0728|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-19 Score=188.33 Aligned_cols=243 Identities=22% Similarity=0.364 Sum_probs=181.3
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
+-|.|.+..++.|.+.+..+.+++.+++.++.. .|+++||+||||+|||.||+++|......|++++.|+++++ |+|+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIa-QPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk-~ige 224 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGE 224 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCC-CCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH-Hhhh
Confidence 467899999999999999999999999888765 57899999999999999999999999999999999999987 9998
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..+++++|-.+
T Consensus 225 g-srmvrelfvma------------------------------------------------------------------- 236 (404)
T KOG0728|consen 225 G-SRMVRELFVMA------------------------------------------------------------------- 236 (404)
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 66778777441
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
..+ .++|
T Consensus 237 -----------------------------------------------------------------------reh--apsi 243 (404)
T KOG0728|consen 237 -----------------------------------------------------------------------REH--APSI 243 (404)
T ss_pred -----------------------------------------------------------------------Hhc--CCce
Confidence 222 3889
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
||.||||.|.+++..++++ +...||+.+|.++-. --|--.|.||-+|+++ ++-.-++|+|+ ||++..
T Consensus 244 ifmdeidsigs~r~e~~~g--gdsevqrtmlellnq-----ldgfeatknikvimat----nridild~allrpgridrk 312 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSG--GDSEVQRTMLELLNQ-----LDGFEATKNIKVIMAT----NRIDILDPALLRPGRIDRK 312 (404)
T ss_pred EeeecccccccccccCCCC--ccHHHHHHHHHHHHh-----ccccccccceEEEEec----cccccccHhhcCCCccccc
Confidence 9999999999887654432 223499988776632 1133467889888884 45566889998 899999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcc
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~ 580 (1165)
++|+|++++...+||+.-.+.+ --+.|+++ +.||+ ..| ...||- ++.+ +.+.-+|.
T Consensus 313 iefp~p~e~ar~~ilkihsrkm-------nl~rgi~l-------~kiae---km~---gasgae-vk~v---cteagm~a 368 (404)
T KOG0728|consen 313 IEFPPPNEEARLDILKIHSRKM-------NLTRGINL-------RKIAE---KMP---GASGAE-VKGV---CTEAGMYA 368 (404)
T ss_pred ccCCCCCHHHHHHHHHHhhhhh-------chhcccCH-------HHHHH---hCC---CCccch-hhhh---hhhhhHHH
Confidence 9999999999999996322211 12456643 34444 332 234552 3333 34556666
Q ss_pred cCCCeeEEcccccccccccCccc
Q psy2392 581 SNNISLLVDADYVNSRLGDLSIN 603 (1165)
Q Consensus 581 ~~~~~~~i~~~~v~~~~~~~~~~ 603 (1165)
.-++.+.+|.+..+-.+.+.+++
T Consensus 369 lrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 369 LRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred HHHhhccccHHHHHHHHHHHHhc
Confidence 66666889988888777776654
|
|
| >KOG0727|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-19 Score=186.43 Aligned_cols=173 Identities=27% Similarity=0.477 Sum_probs=134.0
Q ss_pred hcccchHHHHHHHHHHHHhH------hhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNR------WRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 854 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~------~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~ 854 (1165)
.+|.|.+-.+.++++++..+ |+..|+. +|.++|||||||||||+|++++|+.....|+++.+|+|++
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigid-------pprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGID-------PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCC-------CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 68999999999999999764 3444443 2789999999999999999999999999999999999999
Q ss_pred ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccC
Q psy2392 855 VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREG 934 (1165)
Q Consensus 855 ~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g 934 (1165)
+ |.|+++ .+++++|+.|+.+
T Consensus 228 k-ylgegp-rmvrdvfrlaken---------------------------------------------------------- 247 (408)
T KOG0727|consen 228 K-YLGEGP-RMVRDVFRLAKEN---------------------------------------------------------- 247 (408)
T ss_pred H-HhccCc-HHHHHHHHHHhcc----------------------------------------------------------
Confidence 9 999995 6899999888333
Q ss_pred CCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q psy2392 935 ALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINN 1014 (1165)
Q Consensus 935 ~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~ 1014 (1165)
T Consensus 248 -------------------------------------------------------------------------------- 247 (408)
T KOG0727|consen 248 -------------------------------------------------------------------------------- 247 (408)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--
Q psy2392 1015 VEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-- 1092 (1165)
Q Consensus 1015 ~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~-- 1092 (1165)
.++||||||||.|++.+.. ..+.+.+| |||-|+.++-. .-|--.|.|+-.|++++ +...|.|+|+
T Consensus 248 --apsiifideidaiatkrfd-aqtgadre-vqril~ellnq-----mdgfdq~~nvkvimatn----radtldpallrp 314 (408)
T KOG0727|consen 248 --APSIIFIDEIDAIATKRFD-AQTGADRE-VQRILIELLNQ-----MDGFDQTTNVKVIMATN----RADTLDPALLRP 314 (408)
T ss_pred --CCcEEEeehhhhHhhhhcc-ccccccHH-HHHHHHHHHHh-----ccCcCcccceEEEEecC----cccccCHhhcCC
Confidence 4679999999999998754 22233455 99987766421 11344556777777753 5667889888
Q ss_pred ccCCeEEEcCCCCHHHHHHHH
Q psy2392 1093 GRFPIRVELDSLSISDFTRIM 1113 (1165)
Q Consensus 1093 gR~~i~v~l~~l~~~~l~~il 1113 (1165)
||+.-.++|+-.+..+-.-++
T Consensus 315 grldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 315 GRLDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred ccccccccCCCCchhhhhhhH
Confidence 799999999866655543333
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-18 Score=191.17 Aligned_cols=133 Identities=17% Similarity=0.232 Sum_probs=92.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCccc-CCCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~-~~p~~l~pel~~R~ 497 (1165)
.+|++||||||.+++.... .+. ...+|+.|+..||.. ..++.+|++|.... ..-..++|+|.+||
T Consensus 121 ~~gvL~iDEi~~L~~~~~~---~~~-~~~~~~~Ll~~le~~----------~~~~~vI~a~~~~~~~~~~~~np~L~sR~ 186 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDNE---RDY-GQEAIEILLQVMENQ----------RDDLVVILAGYKDRMDSFFESNPGFSSRV 186 (284)
T ss_pred cCcEEEEechhhhccCCCc---cch-HHHHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhhCHHHHhhC
Confidence 3689999999999754221 122 334778999999853 25677888875220 11112589999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccC-cchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIG-ARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~G-AR~l~~~ie~~l~~ 576 (1165)
+..|.|++|+.+|+.+|+. .++++ .+ ..+++++++.+..+.... ...++.| ||.|++++++.+..
T Consensus 187 ~~~i~fp~l~~edl~~I~~----~~l~~-------~~--~~l~~~a~~~L~~~l~~~-~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 187 AHHVDFPDYSEAELLVIAG----LMLKE-------QQ--YRFSAEAEEAFADYIALR-RTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred CcEEEeCCcCHHHHHHHHH----HHHHH-------hc--cccCHHHHHHHHHHHHHh-CCCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999984 33322 22 357889998887764321 1123455 99999999999866
Q ss_pred hhc
Q psy2392 577 VSF 579 (1165)
Q Consensus 577 ~~~ 579 (1165)
.+.
T Consensus 253 ~~~ 255 (284)
T TIGR02880 253 QAN 255 (284)
T ss_pred HHH
Confidence 543
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-18 Score=211.68 Aligned_cols=249 Identities=16% Similarity=0.209 Sum_probs=179.8
Q ss_pred cccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEE
Q psy2392 742 SGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILM 821 (1165)
Q Consensus 742 ~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL 821 (1165)
.........-.+++-.+.+||.....+.....+.++.|+++++|++.+|+.|.+++.... .. ... ....++|
T Consensus 283 ~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~-~~---~~~----~g~~i~l 354 (784)
T PRK10787 283 PMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQS-RV---NKI----KGPILCL 354 (784)
T ss_pred CCCchHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHH-hc---ccC----CCceEEE
Confidence 344445555666666677888777777889999999999999999999999998887431 11 111 1357999
Q ss_pred EccCCCChhHHHHHHHHHcCCCeEEEecCCcccc--------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHH
Q psy2392 822 IGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV--------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893 (1165)
Q Consensus 822 ~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~--------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a 893 (1165)
+||||||||++++.+|+.++.+|++++++...+. .|+|..++.
T Consensus 355 ~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~----------------------------- 405 (784)
T PRK10787 355 VGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGK----------------------------- 405 (784)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcH-----------------------------
Confidence 9999999999999999999999999987664321 011111110
Q ss_pred HHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHh
Q psy2392 894 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSV 973 (1165)
Q Consensus 894 ~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1165)
+.+
T Consensus 406 ---------------------------------------------------------------------~~~-------- 408 (784)
T PRK10787 406 ---------------------------------------------------------------------LIQ-------- 408 (784)
T ss_pred ---------------------------------------------------------------------HHH--------
Confidence 000
Q ss_pred hCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHh-hhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccc
Q psy2392 974 IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINN-VEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLP 1052 (1165)
Q Consensus 974 ~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~-~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~ 1052 (1165)
++.. ...+.++|||||||+.....+ ..+..||+
T Consensus 409 -------------------------------------~l~~~~~~~~villDEidk~~~~~~g---------~~~~aLle 442 (784)
T PRK10787 409 -------------------------------------KMAKVGVKNPLFLLDEIDKMSSDMRG---------DPASALLE 442 (784)
T ss_pred -------------------------------------HHHhcCCCCCEEEEEChhhcccccCC---------CHHHHHHH
Confidence 0011 114569999999999865221 15779999
Q ss_pred cccCccc---eeeee--eccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHH
Q psy2392 1053 LVEGTTV---NTKYG--IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEAL 1127 (1165)
Q Consensus 1053 ~~Eg~~v---~~k~~--~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l 1127 (1165)
++|.... ...|. +.+.++++|||+..+ ..+.|+|++||.+ ++|.+|+.+++.+|.+ +.++.++.+-
T Consensus 443 vld~~~~~~~~d~~~~~~~dls~v~~i~TaN~-----~~i~~aLl~R~~i-i~~~~~t~eek~~Ia~---~~L~~k~~~~ 513 (784)
T PRK10787 443 VLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS-----MNIPAPLLDRMEV-IRLSGYTEDEKLNIAK---RHLLPKQIER 513 (784)
T ss_pred HhccccEEEEecccccccccCCceEEEEcCCC-----CCCCHHHhcceee-eecCCCCHHHHHHHHH---HhhhHHHHHH
Confidence 9986432 22343 568899999997643 3699999999986 6999999999999999 5555333333
Q ss_pred HhhcCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1128 LATEGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1128 ~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
.+..+..+.+++++++.|++ .|....|++|+-
T Consensus 514 ~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~Le 545 (784)
T PRK10787 514 NALKKGELTVDDSAIIGIIR-YYTREAGVRSLE 545 (784)
T ss_pred hCCCCCeEEECHHHHHHHHH-hCCcccCCcHHH
Confidence 36666789999999999997 888888888753
|
|
| >KOG0735|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-17 Score=196.44 Aligned_cols=306 Identities=20% Similarity=0.230 Sum_probs=203.3
Q ss_pred eeecCCe-EEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhh
Q psy2392 25 SVRRGNK-VSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEA-NLEKHQGNLMRASVELAKEW 102 (1165)
Q Consensus 25 aLARGel-~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~-~yE~~h~~al~~~v~ls~rY 102 (1165)
.+.++.+ .+||. -+|..+ |-+.--..++ || -|.+++.|..++--.||+.+-. ++-.--.+-|.-....+.-|
T Consensus 535 y~~~~~~ia~Iat--~qe~qt-l~~~L~s~~~--Fq-~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 535 YLKRNRKIAVIAT--GQELQT-LNPLLVSPLL--FQ-IVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGY 608 (952)
T ss_pred HHccCcEEEEEEe--chhhhh-cChhhcCccc--eE-EEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCc
Confidence 3455555 56653 345544 5544445556 99 5889999999999999998744 33221225666666666777
Q ss_pred cCCCCchhHHHHHhhhhhhh-hhhccCCCCccCcccccccccccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHHHh
Q psy2392 103 RNDRTLRRLEAMLLTANRET-TLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSEL 181 (1165)
Q Consensus 103 i~~r~lPDkalld~a~a~~~-~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~~L 181 (1165)
.+ -|..++-+.+-..+ ...++..+..+.-+...+.+....+.+..-.. +.+.+++-
T Consensus 609 ~~----~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik-~~k~tgi~------------------ 665 (952)
T KOG0735|consen 609 LA----TDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIK-LVKSTGIR------------------ 665 (952)
T ss_pred cc----hhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhcc-ccccCCCC------------------
Confidence 65 34433211111111 11122122222222222222211111100000 01111211
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
+++|.|..+++..+.+.+.++-+++.++...+-. .+.++|||||||||||.||.++|..++..|+.+-+.++.++ |+|
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr-~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~K-yIG 743 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLR-LRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSK-YIG 743 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcc-cccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHH-Hhc
Confidence 3689999999999999999887777775543221 34899999999999999999999999999999999999987 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..+|++|..|
T Consensus 744 aS-Eq~vR~lF~rA------------------------------------------------------------------ 756 (952)
T KOG0735|consen 744 AS-EQNVRDLFERA------------------------------------------------------------------ 756 (952)
T ss_pred cc-HHHHHHHHHHh------------------------------------------------------------------
Confidence 99 45589998773
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
++..+|
T Consensus 757 --------------------------------------------------------------------------~~a~PC 762 (952)
T KOG0735|consen 757 --------------------------------------------------------------------------QSAKPC 762 (952)
T ss_pred --------------------------------------------------------------------------hccCCe
Confidence 012589
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|+|+||+|.+++++.-.+++ + -+.|.++||+-|||... -+-+.++|+ +++|.-++|+|+ ||++.
T Consensus 763 iLFFDEfdSiAPkRGhDsTG-V-TDRVVNQlLTelDG~Eg--------l~GV~i~aa----TsRpdliDpALLRpGRlD~ 828 (952)
T KOG0735|consen 763 ILFFDEFDSIAPKRGHDSTG-V-TDRVVNQLLTELDGAEG--------LDGVYILAA----TSRPDLIDPALLRPGRLDK 828 (952)
T ss_pred EEEeccccccCcccCCCCCC-c-hHHHHHHHHHhhccccc--------cceEEEEEe----cCCccccCHhhcCCCccce
Confidence 99999999999987543321 1 23588899999998542 234556666 378999999998 89999
Q ss_pred eEecCCCCHHHHHHHHh
Q psy2392 500 RVELDSLSISDFTRIMT 516 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~ 516 (1165)
.|.-+.+++.+..+||+
T Consensus 829 ~v~C~~P~~~eRl~il~ 845 (952)
T KOG0735|consen 829 LVYCPLPDEPERLEILQ 845 (952)
T ss_pred eeeCCCCCcHHHHHHHH
Confidence 99999999999999994
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=199.81 Aligned_cols=259 Identities=20% Similarity=0.253 Sum_probs=183.0
Q ss_pred ccccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEE
Q psy2392 741 GSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNIL 820 (1165)
Q Consensus 741 ~~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iL 820 (1165)
.+....+..+...|.=.+.+||..-..+.....+..+.|+++..|.+++|+.|.+.+...... ...+ .+-+|
T Consensus 283 ~~~SaE~~ViRnYlDwll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~----~~~k----GpILc 354 (782)
T COG0466 283 SPMSAEATVIRNYLDWLLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLT----KKLK----GPILC 354 (782)
T ss_pred CCCCchHHHHHHHHHHHHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHh----ccCC----CcEEE
Confidence 334445555666665567888888777899999999999999999999999999998754212 2222 26789
Q ss_pred EEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHh
Q psy2392 821 MIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDI 900 (1165)
Q Consensus 821 L~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ 900 (1165)
|+||||+|||+|++.+|+.++..|+++.-.-..+.
T Consensus 355 LVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE--------------------------------------------- 389 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE--------------------------------------------- 389 (782)
T ss_pred EECCCCCCchhHHHHHHHHhCCCEEEEecCccccH---------------------------------------------
Confidence 99999999999999999999999999877543321
Q ss_pred hcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCcc
Q psy2392 901 LVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKK 980 (1165)
Q Consensus 901 ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1165)
.+++++|.++ ++++|| -+.|.|+
T Consensus 390 -----------------AEIRGHRRTY--------------------------IGamPG--rIiQ~mk------------ 412 (782)
T COG0466 390 -----------------AEIRGHRRTY--------------------------IGAMPG--KIIQGMK------------ 412 (782)
T ss_pred -----------------HHhccccccc--------------------------cccCCh--HHHHHHH------------
Confidence 0112222222 111222 0111111
Q ss_pred ceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce
Q psy2392 981 TRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN 1060 (1165)
Q Consensus 981 ~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~ 1060 (1165)
+....+-+++||||||++++..| |.++ +||.+++..+.+
T Consensus 413 --------------------------------ka~~~NPv~LLDEIDKm~ss~rG----DPaS-----ALLEVLDPEQN~ 451 (782)
T COG0466 413 --------------------------------KAGVKNPVFLLDEIDKMGSSFRG----DPAS-----ALLEVLDPEQNN 451 (782)
T ss_pred --------------------------------HhCCcCCeEEeechhhccCCCCC----ChHH-----HHHhhcCHhhcC
Confidence 11225679999999999987443 4333 799999876544
Q ss_pred e---eee--eccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCce
Q psy2392 1061 T---KYG--IIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKI 1135 (1165)
Q Consensus 1061 ~---k~~--~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l 1135 (1165)
+ .|- +.+-++++|||+.+. ...+-++|+.||.+ ++++.+++++-.+|.+ +.|+.++.+--+-..-+|
T Consensus 452 ~F~DhYLev~yDLS~VmFiaTANs----l~tIP~PLlDRMEi-I~lsgYt~~EKl~IAk---~~LiPk~~~~~gL~~~el 523 (782)
T COG0466 452 TFSDHYLEVPYDLSKVMFIATANS----LDTIPAPLLDRMEV-IRLSGYTEDEKLEIAK---RHLIPKQLKEHGLKKGEL 523 (782)
T ss_pred chhhccccCccchhheEEEeecCc----cccCChHHhcceee-eeecCCChHHHHHHHH---HhcchHHHHHcCCCccce
Confidence 3 343 778899999999652 23355789999998 5999999999999999 666666554444444579
Q ss_pred EeCHHHHHHHHHHHhccCcCCcee
Q psy2392 1136 EFVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1136 ~~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
.|+|+||..|++ -|-.+.|.+|.
T Consensus 524 ~i~d~ai~~iI~-~YTREAGVR~L 546 (782)
T COG0466 524 TITDEAIKDIIR-YYTREAGVRNL 546 (782)
T ss_pred eecHHHHHHHHH-HHhHhhhhhHH
Confidence 999999999987 56667777663
|
|
| >KOG0727|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-18 Score=181.30 Aligned_cols=176 Identities=26% Similarity=0.457 Sum_probs=137.0
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
-.+|.|.+-.+..+++++..++.+..+....+.. +|.++|+|||||||||+||+++|+.....|+++..|+|+.+ |.|
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefvqk-ylg 231 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQK-YLG 231 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHH-Hhc
Confidence 4589999999999999998776665554443322 46899999999999999999999999999999999999997 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
++ ..+++++|+.+
T Consensus 232 eg-prmvrdvfrla------------------------------------------------------------------ 244 (408)
T KOG0727|consen 232 EG-PRMVRDVFRLA------------------------------------------------------------------ 244 (408)
T ss_pred cC-cHHHHHHHHHH------------------------------------------------------------------
Confidence 98 67899999773
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.++ .++
T Consensus 245 ------------------------------------------------------------------------ken--aps 250 (408)
T KOG0727|consen 245 ------------------------------------------------------------------------KEN--APS 250 (408)
T ss_pred ------------------------------------------------------------------------hcc--CCc
Confidence 111 378
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccc---cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~---Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
||||||||.|++++.+.++ .+.+ .||+-|+.++ +|- =.+.|+-+|+++ ++...+.|+|+ ||
T Consensus 251 iifideidaiatkrfdaqt-gadr-evqril~ellnqmdgf--------dq~~nvkvimat----nradtldpallrpgr 316 (408)
T KOG0727|consen 251 IIFIDEIDAIATKRFDAQT-GADR-EVQRILIELLNQMDGF--------DQTTNVKVIMAT----NRADTLDPALLRPGR 316 (408)
T ss_pred EEEeehhhhHhhhhccccc-cccH-HHHHHHHHHHHhccCc--------CcccceEEEEec----CcccccCHhhcCCcc
Confidence 9999999999999887442 2223 3888766554 552 245677788874 56677999998 89
Q ss_pred CCeeEecCCCCHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRI 514 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~I 514 (1165)
++..++|+-++..+-.-+
T Consensus 317 ldrkiefplpdrrqkrlv 334 (408)
T KOG0727|consen 317 LDRKIEFPLPDRRQKRLV 334 (408)
T ss_pred ccccccCCCCchhhhhhh
Confidence 999999997766554333
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.6e-18 Score=189.39 Aligned_cols=116 Identities=16% Similarity=0.245 Sum_probs=80.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCC-CCCCCCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-LAKPSDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~-~~~p~dl~pel~gR~ 1095 (1165)
..||+||||+|.+..... ..+.+. .+|+.|+.+||.. ..++.+|++|.-. +..-.++.|+|.+||
T Consensus 122 ~ggVLfIDE~~~l~~~~~---~~~~~~-e~~~~L~~~me~~----------~~~~~vI~ag~~~~~~~~~~~np~L~sR~ 187 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDN---ERDYGS-EAIEILLQVMENQ----------RDDLVVIFAGYKDRMDKFYESNPGLSSRI 187 (287)
T ss_pred cCCEEEEEccchhccCCC---ccchHH-HHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhcCHHHHHhC
Confidence 468999999999975421 223333 4788999999852 3567888988521 011123569999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
+..++|++++.+++.+|+. .+ ++.++. .+++++...+....... ....+.|
T Consensus 188 ~~~i~F~~~t~~el~~I~~----~~-------l~~~~~--~l~~~~~~~L~~~i~~~-~~~~~~G 238 (287)
T CHL00181 188 ANHVDFPDYTPEELLQIAK----IM-------LEEQQY--QLTPEAEKALLDYIKKR-MEQPLFA 238 (287)
T ss_pred CceEEcCCcCHHHHHHHHH----HH-------HHHhcC--CCChhHHHHHHHHHHHh-CCCCCCc
Confidence 9999999999999999998 33 333344 57788888777765542 2223455
|
|
| >KOG0728|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-18 Score=180.88 Aligned_cols=181 Identities=25% Similarity=0.437 Sum_probs=146.7
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
+-|.|.+..+++|.+.|..+.+...+++.+... +|+++|||||||+|||.||+++|....+.|+++++|+++++ |+|+
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIa-QPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk-~ige 224 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIA-QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQK-YIGE 224 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCC-CCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHH-Hhhh
Confidence 568899999999999999888887777766543 47999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..+++++|-.|+.+
T Consensus 225 g-srmvrelfvmareh---------------------------------------------------------------- 239 (404)
T KOG0728|consen 225 G-SRMVRELFVMAREH---------------------------------------------------------------- 239 (404)
T ss_pred h-HHHHHHHHHHHHhc----------------------------------------------------------------
Confidence 8 57899998665222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.+.|
T Consensus 240 ----------------------------------------------------------------------------apsi 243 (404)
T KOG0728|consen 240 ----------------------------------------------------------------------------APSI 243 (404)
T ss_pred ----------------------------------------------------------------------------CCce
Confidence 4679
Q ss_pred eeehhhhhhhccCC-CCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSS-QNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~-~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
||.||||.|.+.+. +++|+| .-|||.+|.++-. --|--.|.||-.|.++. +-.-|.|+|+ ||+.-
T Consensus 244 ifmdeidsigs~r~e~~~ggd---sevqrtmlellnq-----ldgfeatknikvimatn----ridild~allrpgridr 311 (404)
T KOG0728|consen 244 IFMDEIDSIGSSRVESGSGGD---SEVQRTMLELLNQ-----LDGFEATKNIKVIMATN----RIDILDPALLRPGRIDR 311 (404)
T ss_pred EeeecccccccccccCCCCcc---HHHHHHHHHHHHh-----ccccccccceEEEEecc----ccccccHhhcCCCcccc
Confidence 99999999998854 333333 3499988877642 11556678888888864 3334668887 89999
Q ss_pred EEEcCCCCHHHHHHHHhhh
Q psy2392 1098 RVELDSLSISDFTRIMTST 1116 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~ 1116 (1165)
.++|+|++++....||+--
T Consensus 312 kiefp~p~e~ar~~ilkih 330 (404)
T KOG0728|consen 312 KIEFPPPNEEARLDILKIH 330 (404)
T ss_pred cccCCCCCHHHHHHHHHHh
Confidence 9999999999999999843
|
|
| >KOG0731|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-18 Score=205.16 Aligned_cols=173 Identities=27% Similarity=0.495 Sum_probs=145.8
Q ss_pred hcccchHHHHHHHHHHHHh-----HhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRN-----RWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~-----~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
++|.|.++|+++|.+.+.. .|.++|... |+++||+||||||||.|||++|.+.+.||+.+++|+|++.
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKi-------PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKI-------PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcC-------cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 6899999999999988863 344444332 7999999999999999999999999999999999999998
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|+|.+ ...++++|..|+.+
T Consensus 384 -~~g~~-asrvr~lf~~ar~~----------------------------------------------------------- 402 (774)
T KOG0731|consen 384 -FVGVG-ASRVRDLFPLARKN----------------------------------------------------------- 402 (774)
T ss_pred -hcccc-hHHHHHHHHHhhcc-----------------------------------------------------------
Confidence 88887 56799998777333
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 403 -------------------------------------------------------------------------------- 402 (774)
T KOG0731|consen 403 -------------------------------------------------------------------------------- 402 (774)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCC--CCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh-
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQ--NNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ- 1092 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~--~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~- 1092 (1165)
.++||||||||.++..+.+ ..++...+|---+.||+-|+|. ..+++++|+|++ ++|.-|.|+|+
T Consensus 403 -aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf--------~~~~~vi~~a~t----nr~d~ld~allr 469 (774)
T KOG0731|consen 403 -APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF--------ETSKGVIVLAAT----NRPDILDPALLR 469 (774)
T ss_pred -CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC--------cCCCcEEEEecc----CCccccCHHhcC
Confidence 4679999999999999753 3456667777778899999974 345789999996 48888999999
Q ss_pred -ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1093 -GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1093 -gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|||.-.+.++.++.....+|++
T Consensus 470 pGRfdr~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 470 PGRFDRQIQIDLPDVKGRASILK 492 (774)
T ss_pred CCccccceeccCCchhhhHHHHH
Confidence 8999999999999999999998
|
|
| >KOG0731|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=202.29 Aligned_cols=178 Identities=27% Similarity=0.491 Sum_probs=142.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.++|+..|.+.+.- ++.+.-...++.. .|+++||+||||||||.|||++|.+.+.||+.+++|+|++. |+|-
T Consensus 311 kDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAK-iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~-~~g~ 387 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKF-LKNPEQYQELGAK-IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM-FVGV 387 (774)
T ss_pred ccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCc-CcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH-hccc
Confidence 5899999999999887752 1111111111111 36899999999999999999999999999999999999984 7777
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++++|..+
T Consensus 388 ~-asrvr~lf~~a------------------------------------------------------------------- 399 (774)
T KOG0731|consen 388 G-ASRVRDLFPLA------------------------------------------------------------------- 399 (774)
T ss_pred c-hHHHHHHHHHh-------------------------------------------------------------------
Confidence 6 56688888662
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
..+ .++|
T Consensus 400 -----------------------------------------------------------------------r~~--aP~i 406 (774)
T KOG0731|consen 400 -----------------------------------------------------------------------RKN--APSI 406 (774)
T ss_pred -----------------------------------------------------------------------hcc--CCeE
Confidence 111 3899
Q ss_pred EEEecchhhhccCCC--CCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 423 IFLDEIDKITTRSSQ--NNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 423 ifiDEidki~~~~~~--~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
|||||||.+...+.+ ..+++-++|.--++||+-|||-. .+.+++|+|++ ++|.-++|+|+ |||+
T Consensus 407 ifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~--------~~~~vi~~a~t----nr~d~ld~allrpGRfd 474 (774)
T KOG0731|consen 407 IFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE--------TSKGVIVLAAT----NRPDILDPALLRPGRFD 474 (774)
T ss_pred EEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc--------CCCcEEEEecc----CCccccCHHhcCCCccc
Confidence 999999999998853 33567788888889999999843 34679999984 68999999999 8999
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
..|.++.++.....+|+.
T Consensus 475 r~i~i~~p~~~~r~~i~~ 492 (774)
T KOG0731|consen 475 RQIQIDLPDVKGRASILK 492 (774)
T ss_pred cceeccCCchhhhHHHHH
Confidence 999999999999999995
|
|
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.4e-18 Score=193.66 Aligned_cols=176 Identities=27% Similarity=0.453 Sum_probs=134.8
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|.|.++|+.++.+.+... +...-+..+..+ -|+++||+||||+|||.|||++|.+.+.||+...+|+|-+. |||.
T Consensus 304 ~dVkG~DEAK~ELeEiVefL-kdP~kftrLGGK-LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm-~VGv 380 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFL-KDPTKFTRLGGK-LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEM-FVGV 380 (752)
T ss_pred ccccChHHHHHHHHHHHHHh-cCcHHhhhccCc-CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhh-hhcc
Confidence 79999999998888776521 111111111111 26999999999999999999999999999999999999998 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+. ..+|+||..|++.
T Consensus 381 GA-rRVRdLF~aAk~~---------------------------------------------------------------- 395 (752)
T KOG0734|consen 381 GA-RRVRDLFAAAKAR---------------------------------------------------------------- 395 (752)
T ss_pred cH-HHHHHHHHHHHhc----------------------------------------------------------------
Confidence 94 5699999877333
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.++|
T Consensus 396 ----------------------------------------------------------------------------APcI 399 (752)
T KOG0734|consen 396 ----------------------------------------------------------------------------APCI 399 (752)
T ss_pred ----------------------------------------------------------------------------CCeE
Confidence 4679
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
|||||||.+.+.+...... ..+. --+.||--|+|. -.++-|.+|++++| |.+|.|+|. |||...
T Consensus 400 IFIDEiDavG~kR~~~~~~-y~kq-TlNQLLvEmDGF--------~qNeGiIvigATNf----pe~LD~AL~RPGRFD~~ 465 (752)
T KOG0734|consen 400 IFIDEIDAVGGKRNPSDQH-YAKQ-TLNQLLVEMDGF--------KQNEGIIVIGATNF----PEALDKALTRPGRFDRH 465 (752)
T ss_pred EEEechhhhcccCCccHHH-HHHH-HHHHHHHHhcCc--------CcCCceEEEeccCC----hhhhhHHhcCCCcccee
Confidence 9999999999875431111 2221 225677777864 34567889999875 788999887 899999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
|..+.++-.-..+||+
T Consensus 466 v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734|consen 466 VTVPLPDVRGRTEILK 481 (752)
T ss_pred EecCCCCcccHHHHHH
Confidence 9999999988988888
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-17 Score=184.26 Aligned_cols=155 Identities=16% Similarity=0.181 Sum_probs=120.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 895 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~ 895 (1165)
|..++||||||||||.+|+++|+.++.+|+.++++++.++ |+|++ +..++++|..|...++
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk-~vGEs-Ek~IR~~F~~A~~~a~----------------- 208 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE-NAGEP-GKLIRQRYREAADIIK----------------- 208 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC-cCCcH-HHHHHHHHHHHHHHhh-----------------
Confidence 6899999999999999999999999999999999999998 99998 5779999987722200
Q ss_pred HHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhC
Q psy2392 896 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 975 (1165)
Q Consensus 896 ~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1165)
T Consensus 209 -------------------------------------------------------------------------------- 208 (413)
T PLN00020 209 -------------------------------------------------------------------------------- 208 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcccccc
Q psy2392 976 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 1055 (1165)
Q Consensus 976 ~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~E 1055 (1165)
...+++||||||||+++....+ ....+...-|...||.+++
T Consensus 209 --------------------------------------~~~aPcVLFIDEIDA~~g~r~~-~~~tv~~qiV~~tLLnl~D 249 (413)
T PLN00020 209 --------------------------------------KKGKMSCLFINDLDAGAGRFGT-TQYTVNNQMVNGTLMNIAD 249 (413)
T ss_pred --------------------------------------ccCCCeEEEEehhhhcCCCCCC-CCcchHHHHHHHHHHHHhc
Confidence 0115789999999999988653 2223333334567888888
Q ss_pred Ccc-cee--ee-eeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1056 GTT-VNT--KY-GIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1056 g~~-v~~--k~-~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
+-+ |.. -| ..-.+.++.+|++| ++|+.|.|+|++ ||+..+ ..++.++...||+
T Consensus 250 ~p~~v~l~G~w~~~~~~~~V~VIaTT----Nrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~ 308 (413)
T PLN00020 250 NPTNVSLGGDWREKEEIPRVPIIVTG----NDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVH 308 (413)
T ss_pred CCccccccccccccccCCCceEEEeC----CCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHH
Confidence 632 222 12 22346778889988 699999999997 999864 4689999999998
|
|
| >KOG2004|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=193.98 Aligned_cols=242 Identities=24% Similarity=0.353 Sum_probs=179.8
Q ss_pred HHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCCh
Q psy2392 750 AAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGK 829 (1165)
Q Consensus 750 ~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GK 829 (1165)
.-.+|+=.|.+||.....+......-++.|+++..|++++|+.|.+.|... + +++..+.+.+||+||||+||
T Consensus 380 trNYLdwlt~LPWgk~S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~--k------Lrgs~qGkIlCf~GPPGVGK 451 (906)
T KOG2004|consen 380 TRNYLDWLTSLPWGKSSTENLDLARAKEILDEDHYGMEDVKERILEFIAVG--K------LRGSVQGKILCFVGPPGVGK 451 (906)
T ss_pred HHHHHHHHHhCCCCCCChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHH--h------hcccCCCcEEEEeCCCCCCc
Confidence 334444447788888877899999999999999999999999999999864 2 22222347899999999999
Q ss_pred hHHHHHHHHHcCCCeEEEecCCcccc--------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhh
Q psy2392 830 TEIARRLAKLSNAPFIKIEATKFTEV--------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDIL 901 (1165)
Q Consensus 830 T~lAk~lA~~l~~~fi~l~~se~~~~--------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~l 901 (1165)
|++++.+|+.+|..|++++-.-+++. -|+|.-++.
T Consensus 452 TSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGk------------------------------------- 494 (906)
T KOG2004|consen 452 TSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGK------------------------------------- 494 (906)
T ss_pred ccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChH-------------------------------------
Confidence 99999999999999999987554431 133333332
Q ss_pred cCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccc
Q psy2392 902 VPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKT 981 (1165)
Q Consensus 902 l~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 981 (1165)
|.+.|+..
T Consensus 495 -------------------------------------------------------------iIq~LK~v----------- 502 (906)
T KOG2004|consen 495 -------------------------------------------------------------IIQCLKKV----------- 502 (906)
T ss_pred -------------------------------------------------------------HHHHHHhh-----------
Confidence 22222221
Q ss_pred eeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee
Q psy2392 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 1061 (1165)
Q Consensus 982 ~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~ 1061 (1165)
..++-+++|||||||.+...| |.++ +||.+++..+..+
T Consensus 503 ---------------------------------~t~NPliLiDEvDKlG~g~qG----DPas-----ALLElLDPEQNan 540 (906)
T KOG2004|consen 503 ---------------------------------KTENPLILIDEVDKLGSGHQG----DPAS-----ALLELLDPEQNAN 540 (906)
T ss_pred ---------------------------------CCCCceEEeehhhhhCCCCCC----ChHH-----HHHHhcChhhccc
Confidence 125779999999999954333 3333 7999998655433
Q ss_pred ---ee--eeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceE
Q psy2392 1062 ---KY--GIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 1136 (1165)
Q Consensus 1062 ---k~--~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~ 1136 (1165)
.| .+++-+.+||||+.+- -.-+-|+|+.||.+ ++++.+..+|-..|.. +.|+.|+.+.++-..-.+.
T Consensus 541 FlDHYLdVp~DLSkVLFicTAN~----idtIP~pLlDRMEv-IelsGYv~eEKv~IA~---~yLip~a~~~~gl~~e~v~ 612 (906)
T KOG2004|consen 541 FLDHYLDVPVDLSKVLFICTANV----IDTIPPPLLDRMEV-IELSGYVAEEKVKIAE---RYLIPQALKDCGLKPEQVK 612 (906)
T ss_pred hhhhccccccchhheEEEEeccc----cccCChhhhhhhhe-eeccCccHHHHHHHHH---HhhhhHHHHHcCCCHHhcC
Confidence 33 3788999999999652 22344789999998 5999999999999998 7888888776655555678
Q ss_pred eCHHHHHHHHHHHhccCcCCcee
Q psy2392 1137 FVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1137 ~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
++++|+..|.+ -|+.+.|.+|.
T Consensus 613 is~~al~~lI~-~YcrEaGVRnL 634 (906)
T KOG2004|consen 613 ISDDALLALIE-RYCREAGVRNL 634 (906)
T ss_pred ccHHHHHHHHH-HHHHHHhHHHH
Confidence 89999999987 57778888763
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.72 E-value=4e-17 Score=182.28 Aligned_cols=107 Identities=19% Similarity=0.361 Sum_probs=77.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCC-CCCCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLA-KPSDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~-~p~dl~pel~gR~ 1095 (1165)
..||+||||||.|....+ .+.. ..+++.|++.+|.. +.++.+|++|.-... ....+.|+|.+||
T Consensus 105 ~~~VL~IDE~~~L~~~~~----~~~~-~~~i~~Ll~~~e~~----------~~~~~vila~~~~~~~~~~~~~p~L~sRf 169 (261)
T TIGR02881 105 LGGVLFIDEAYSLARGGE----KDFG-KEAIDTLVKGMEDN----------RNEFVLILAGYSDEMDYFLSLNPGLRSRF 169 (261)
T ss_pred cCCEEEEechhhhccCCc----cchH-HHHHHHHHHHHhcc----------CCCEEEEecCCcchhHHHHhcChHHHhcc
Confidence 468999999999974221 1111 23788899999863 355778888763322 1234679999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+..++|++++.+++.+|++ ..+...+. .++++++..|++....
T Consensus 170 ~~~i~f~~~~~~el~~Il~-----------~~~~~~~~--~l~~~a~~~l~~~~~~ 212 (261)
T TIGR02881 170 PISIDFPDYTVEELMEIAE-----------RMVKEREY--KLTEEAKWKLREHLYK 212 (261)
T ss_pred ceEEEECCCCHHHHHHHHH-----------HHHHHcCC--ccCHHHHHHHHHHHHH
Confidence 9999999999999999998 22333344 7899999999876543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >KOG0737|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-17 Score=186.39 Aligned_cols=188 Identities=22% Similarity=0.356 Sum_probs=142.9
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
...|.++.-. +.+|.|.+.++..+.+.+..+.++.++++..+--.++.++||+||||||||.+|+++|++.+.+|+.++
T Consensus 81 ~v~p~~I~v~-f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~ 159 (386)
T KOG0737|consen 81 VVPPSEIGVS-FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS 159 (386)
T ss_pred ccchhhceee-hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee
Confidence 3344444333 369999999999999999999888888865443345799999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
++.++++ |.|++ +.+++-+|..|.+.
T Consensus 160 ~s~lt~K-WfgE~-eKlv~AvFslAsKl---------------------------------------------------- 185 (386)
T KOG0737|consen 160 VSNLTSK-WFGEA-QKLVKAVFSLASKL---------------------------------------------------- 185 (386)
T ss_pred ccccchh-hHHHH-HHHHHHHHhhhhhc----------------------------------------------------
Confidence 9999998 99988 45677777555111
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
T Consensus 186 -------------------------------------------------------------------------------- 185 (386)
T KOG0737|consen 186 -------------------------------------------------------------------------------- 185 (386)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCce---EEEEecCCCCCCCCC
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH---ILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~---ilfI~~gaf~~~~p~ 1085 (1165)
++.||||||||.+...+.+ +..++.+ ++.....+-|-+..|++ +++.+| .+.|.
T Consensus 186 --------~P~iIFIDEvds~L~~R~s-~dHEa~a----------~mK~eFM~~WDGl~s~~~~rVlVlgA----TNRP~ 242 (386)
T KOG0737|consen 186 --------QPSIIFIDEVDSFLGQRRS-TDHEATA----------MMKNEFMALWDGLSSKDSERVLVLGA----TNRPF 242 (386)
T ss_pred --------CcceeehhhHHHHHhhccc-chHHHHH----------HHHHHHHHHhccccCCCCceEEEEeC----CCCCc
Confidence 6789999999999988621 2222211 11222223344444433 555555 36999
Q ss_pred CCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1086 DLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1086 dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|+..++++|||-|++..-++.++..+||+
T Consensus 243 DlDeAiiRR~p~rf~V~lP~~~qR~kILk 271 (386)
T KOG0737|consen 243 DLDEAIIRRLPRRFHVGLPDAEQRRKILK 271 (386)
T ss_pred cHHHHHHHhCcceeeeCCCchhhHHHHHH
Confidence 99999999999999999999999999999
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=177.87 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=134.9
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHH
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 296 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1165)
.|..++||||||||||.+|+++|++++.+|+.++++++.++ |+|++ +..++++|+.+...+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk-~vGEs-Ek~IR~~F~~A~~~a----------------- 207 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE-NAGEP-GKLIRQRYREAADII----------------- 207 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC-cCCcH-HHHHHHHHHHHHHHh-----------------
Confidence 35899999999999999999999999999999999999885 99999 778999998741000
Q ss_pred HHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhc
Q psy2392 297 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 376 (1165)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1165)
T Consensus 208 -------------------------------------------------------------------------------- 207 (413)
T PLN00020 208 -------------------------------------------------------------------------------- 207 (413)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccc
Q psy2392 377 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 456 (1165)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~ 456 (1165)
.....++||||||||.+++.+.+ ....+...-|...||.++
T Consensus 208 --------------------------------------~~~~aPcVLFIDEIDA~~g~r~~-~~~tv~~qiV~~tLLnl~ 248 (413)
T PLN00020 208 --------------------------------------KKKGKMSCLFINDLDAGAGRFGT-TQYTVNNQMVNGTLMNIA 248 (413)
T ss_pred --------------------------------------hccCCCeEEEEehhhhcCCCCCC-CCcchHHHHHHHHHHHHh
Confidence 00015899999999999988653 223333444556789998
Q ss_pred cCce-eee--ec-eeecCceEEEEEeCCcccCCCCCCchhhhC--CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHH
Q psy2392 457 EGTT-VNT--KY-GIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL 530 (1165)
Q Consensus 457 Eg~~-v~~--~~-~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll 530 (1165)
|+-+ |.. -| ..-.+.++.+|++| ++|+.|.|+|++ ||+..+ ..++.++..+||+ .++
T Consensus 249 D~p~~v~l~G~w~~~~~~~~V~VIaTT----Nrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~-----------~~~ 311 (413)
T PLN00020 249 DNPTNVSLGGDWREKEEIPRVPIIVTG----NDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVH-----------GIF 311 (413)
T ss_pred cCCccccccccccccccCCCceEEEeC----CCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHH-----------HHh
Confidence 8732 211 11 11245678888886 799999999995 999864 5799999999994 223
Q ss_pred hhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 531 ATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 531 ~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
+..+ ++.+.+..|++.-.. .+.+-+||=|-+.
T Consensus 312 r~~~----l~~~dv~~Lv~~f~g--q~~Df~GAlrar~ 343 (413)
T PLN00020 312 RDDG----VSREDVVKLVDTFPG--QPLDFFGALRARV 343 (413)
T ss_pred ccCC----CCHHHHHHHHHcCCC--CCchhhhHHHHHH
Confidence 3333 345666666654421 1234577744433
|
|
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-17 Score=187.63 Aligned_cols=187 Identities=26% Similarity=0.415 Sum_probs=138.6
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
..|......--++|.|-|+||..+.+.+.. ++-+.-+..++.. -|+++||+||||+|||.|||++|.+.+.||+....
T Consensus 293 v~p~~~~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGK-LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sG 370 (752)
T KOG0734|consen 293 VDPEQMKNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGK-LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASG 370 (752)
T ss_pred cChhhhcccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCc-CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccc
Confidence 344444333346999999999888776642 1111112222221 26899999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 331 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1165)
|+|-+. |||-+ ...+++||..+
T Consensus 371 SEFdEm-~VGvG-ArRVRdLF~aA-------------------------------------------------------- 392 (752)
T KOG0734|consen 371 SEFDEM-FVGVG-ARRVRDLFAAA-------------------------------------------------------- 392 (752)
T ss_pred cchhhh-hhccc-HHHHHHHHHHH--------------------------------------------------------
Confidence 999776 99988 66789998773
Q ss_pred HhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHH
Q psy2392 332 RLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411 (1165)
Q Consensus 332 ~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1165)
T Consensus 393 -------------------------------------------------------------------------------- 392 (752)
T KOG0734|consen 393 -------------------------------------------------------------------------------- 392 (752)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch
Q psy2392 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP 491 (1165)
Q Consensus 412 ~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p 491 (1165)
..+ .+|||||||||.+..++.... ....+ .--++||--|||-. .++-|+||++++| |.+|+|
T Consensus 393 --k~~--APcIIFIDEiDavG~kR~~~~-~~y~k-qTlNQLLvEmDGF~--------qNeGiIvigATNf----pe~LD~ 454 (752)
T KOG0734|consen 393 --KAR--APCIIFIDEIDAVGGKRNPSD-QHYAK-QTLNQLLVEMDGFK--------QNEGIIVIGATNF----PEALDK 454 (752)
T ss_pred --Hhc--CCeEEEEechhhhcccCCccH-HHHHH-HHHHHHHHHhcCcC--------cCCceEEEeccCC----hhhhhH
Confidence 111 489999999999987654311 11122 23356888888843 4567889999654 899999
Q ss_pred hhh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 492 ELQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 492 el~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+|. |||+..|..+.++-.-..+||.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~ 481 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILK 481 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHH
Confidence 998 8999999999999999999995
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-16 Score=180.05 Aligned_cols=106 Identities=18% Similarity=0.279 Sum_probs=75.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCC-CCCCCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~-~~p~dl~pel~gR~ 1095 (1165)
..|++||||||.+..... ..+.+. .+|+.|+.+||.. ..++.+|++|.-.. ..-..+.|+|.+||
T Consensus 121 ~~gvL~iDEi~~L~~~~~---~~~~~~-~~~~~Ll~~le~~----------~~~~~vI~a~~~~~~~~~~~~np~L~sR~ 186 (284)
T TIGR02880 121 MGGVLFIDEAYYLYRPDN---ERDYGQ-EAIEILLQVMENQ----------RDDLVVILAGYKDRMDSFFESNPGFSSRV 186 (284)
T ss_pred cCcEEEEechhhhccCCC---ccchHH-HHHHHHHHHHhcC----------CCCEEEEEeCCcHHHHHHHhhCHHHHhhC
Confidence 468999999999975421 122233 4788999999853 25677888886210 00012479999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+..++|++|+.+|+..|+. .++++ .+. .++++++..++...
T Consensus 187 ~~~i~fp~l~~edl~~I~~----~~l~~-------~~~--~l~~~a~~~L~~~l 227 (284)
T TIGR02880 187 AHHVDFPDYSEAELLVIAG----LMLKE-------QQY--RFSAEAEEAFADYI 227 (284)
T ss_pred CcEEEeCCcCHHHHHHHHH----HHHHH-------hcc--ccCHHHHHHHHHHH
Confidence 9999999999999999998 33333 333 57899998887753
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=185.70 Aligned_cols=242 Identities=18% Similarity=0.300 Sum_probs=157.6
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|+|++.+++.+.+++..++.++.+....+.. +|.++||+||||||||++|+++|+.++.+|+.+.++++... |+|
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k-~~g 221 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK-YLG 221 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH-hcc
Confidence 3589999999999999998776666555444322 46899999999999999999999999999999998887654 776
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ ...++++|..+
T Consensus 222 e~-~~~lr~lf~~A------------------------------------------------------------------ 234 (398)
T PTZ00454 222 EG-PRMVRDVFRLA------------------------------------------------------------------ 234 (398)
T ss_pred hh-HHHHHHHHHHH------------------------------------------------------------------
Confidence 65 33344444331
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
. ...++
T Consensus 235 ------------------------------------------------------------------------~--~~~P~ 240 (398)
T PTZ00454 235 ------------------------------------------------------------------------R--ENAPS 240 (398)
T ss_pred ------------------------------------------------------------------------H--hcCCe
Confidence 0 01478
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.+...+.+.+ +.+.....+...||..++|- -...++.+|+++ +.|+.++|+|+ |||+
T Consensus 241 ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~--------~~~~~v~VI~aT----N~~d~LDpAllR~GRfd 308 (398)
T PTZ00454 241 IIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF--------DQTTNVKVIMAT----NRADTLDPALLRPGRLD 308 (398)
T ss_pred EEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc--------CCCCCEEEEEec----CCchhCCHHHcCCCccc
Confidence 999999999987764322 22211112223445555542 124567788874 57899999987 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..|+|+.++.++...|++ .+ +...++.- +-.+..++.... ++-++-|..++........
T Consensus 309 ~~I~~~~P~~~~R~~Il~----~~-------~~~~~l~~---dvd~~~la~~t~-------g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 309 RKIEFPLPDRRQKRLIFQ----TI-------TSKMNLSE---EVDLEDFVSRPE-------KISAADIAAICQEAGMQAV 367 (398)
T ss_pred EEEEeCCcCHHHHHHHHH----HH-------HhcCCCCc---ccCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999984 11 12222221 112455665543 3444556666655543222
Q ss_pred cccCCCeeEEcccccccccccCcc
Q psy2392 579 FNSNNISLLVDADYVNSRLGDLSI 602 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~~~~ 602 (1165)
.+ ....|+.+.+.+.+...+.
T Consensus 368 r~---~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 368 RK---NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred Hc---CCCccCHHHHHHHHHHHHh
Confidence 11 1135666666666555443
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-16 Score=190.51 Aligned_cols=176 Identities=28% Similarity=0.454 Sum_probs=143.5
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCC--CCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGP--LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~--~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gy 259 (1165)
..++.|.+.++..+.+++..+.+++.+... +++ +.++||+||||||||++|+++|.+++.+|+.++++++.+. |
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~---~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk-~ 316 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRP---PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK-W 316 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCC---CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc-c
Confidence 357889999999999999988777765442 333 4799999999999999999999999999999999999875 9
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCC
Q psy2392 260 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339 (1165)
Q Consensus 260 vG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (1165)
+|++ +..++.+|..+
T Consensus 317 vGes-ek~ir~~F~~A---------------------------------------------------------------- 331 (494)
T COG0464 317 VGES-EKNIRELFEKA---------------------------------------------------------------- 331 (494)
T ss_pred cchH-HHHHHHHHHHH----------------------------------------------------------------
Confidence 9998 66688888763
Q ss_pred CcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhcc
Q psy2392 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 419 (1165)
Q Consensus 340 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 419 (1165)
.. ..
T Consensus 332 --------------------------------------------------------------------------~~--~~ 335 (494)
T COG0464 332 --------------------------------------------------------------------------RK--LA 335 (494)
T ss_pred --------------------------------------------------------------------------Hc--CC
Confidence 00 14
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RF 497 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~ 497 (1165)
++||||||||++.+.+..++ +.+...+.+.||..++|-. ..+++++|++. +.|+.+.|+++. ||
T Consensus 336 p~iiFiDEiDs~~~~r~~~~--~~~~~r~~~~lL~~~d~~e--------~~~~v~vi~aT----N~p~~ld~a~lR~gRf 401 (494)
T COG0464 336 PSIIFIDEIDSLASGRGPSE--DGSGRRVVGQLLTELDGIE--------KAEGVLVIAAT----NRPDDLDPALLRPGRF 401 (494)
T ss_pred CcEEEEEchhhhhccCCCCC--chHHHHHHHHHHHHhcCCC--------ccCceEEEecC----CCccccCHhhcccCcc
Confidence 88999999999998876522 2222457778999998632 45667788884 689999999997 99
Q ss_pred CeeEecCCCCHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~ 516 (1165)
+.++.+.+++..+..+|++
T Consensus 402 d~~i~v~~pd~~~r~~i~~ 420 (494)
T COG0464 402 DRLIYVPLPDLEERLEIFK 420 (494)
T ss_pred ceEeecCCCCHHHHHHHHH
Confidence 9999999999999999995
|
|
| >KOG0737|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=179.05 Aligned_cols=189 Identities=24% Similarity=0.422 Sum_probs=144.1
Q ss_pred HHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 173 VIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 173 ~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
.|.++.... .+|.|.+..+..+.+.+..+.++++++...+-..++.++||+||||||||.+|+++|++.+.+|+-+.++
T Consensus 83 ~p~~I~v~f-~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 83 PPSEIGVSF-DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred chhhceeeh-hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 344444333 3899999999999999999999999987555445568999999999999999999999999999999999
Q ss_pred ccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHH
Q psy2392 253 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 332 (1165)
Q Consensus 253 ~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1165)
.++++ |.|++ ++.++.+|-.+
T Consensus 162 ~lt~K-WfgE~-eKlv~AvFslA--------------------------------------------------------- 182 (386)
T KOG0737|consen 162 NLTSK-WFGEA-QKLVKAVFSLA--------------------------------------------------------- 182 (386)
T ss_pred ccchh-hHHHH-HHHHHHHHhhh---------------------------------------------------------
Confidence 99986 88777 45555555432
Q ss_pred hhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHH
Q psy2392 333 LREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 412 (1165)
Q Consensus 333 ~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1165)
.|+
T Consensus 183 --------------------------------------------------------------------sKl--------- 185 (386)
T KOG0737|consen 183 --------------------------------------------------------------------SKL--------- 185 (386)
T ss_pred --------------------------------------------------------------------hhc---------
Confidence 111
Q ss_pred HHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchh
Q psy2392 413 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 492 (1165)
Q Consensus 413 a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pe 492 (1165)
+++||||||||.+...+.. +..++ ..-..+++..+-+|-.-+ +...|++.+| +++|.|+..+
T Consensus 186 ------~P~iIFIDEvds~L~~R~s-~dHEa-~a~mK~eFM~~WDGl~s~------~~~rVlVlgA----TNRP~DlDeA 247 (386)
T KOG0737|consen 186 ------QPSIIFIDEVDSFLGQRRS-TDHEA-TAMMKNEFMALWDGLSSK------DSERVLVLGA----TNRPFDLDEA 247 (386)
T ss_pred ------CcceeehhhHHHHHhhccc-chHHH-HHHHHHHHHHHhccccCC------CCceEEEEeC----CCCCccHHHH
Confidence 6899999999999977632 21222 122444566666763311 1123666666 4799999999
Q ss_pred hhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 493 LQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 493 l~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+++|||.++.+.-++.....+||+
T Consensus 248 iiRR~p~rf~V~lP~~~qR~kILk 271 (386)
T KOG0737|consen 248 IIRRLPRRFHVGLPDAEQRRKILK 271 (386)
T ss_pred HHHhCcceeeeCCCchhhHHHHHH
Confidence 999999999999999999999995
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-16 Score=183.40 Aligned_cols=178 Identities=26% Similarity=0.434 Sum_probs=131.3
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.+.+.+..++....+...... .+|+++||+||||||||++|+++|+.++.+|+.+.++++.++ |+|
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl-~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k-~~g 221 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGI-DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQK-YLG 221 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC-CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHH-hcc
Confidence 478999999999999999876554433332211 136899999999999999999999999999999999888776 888
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++. ..++++|..|..
T Consensus 222 e~~-~~lr~lf~~A~~---------------------------------------------------------------- 236 (398)
T PTZ00454 222 EGP-RMVRDVFRLARE---------------------------------------------------------------- 236 (398)
T ss_pred hhH-HHHHHHHHHHHh----------------------------------------------------------------
Confidence 763 446666544310
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
.+++
T Consensus 237 ----------------------------------------------------------------------------~~P~ 240 (398)
T PTZ00454 237 ----------------------------------------------------------------------------NAPS 240 (398)
T ss_pred ----------------------------------------------------------------------------cCCe
Confidence 1578
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhcccc---ccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--cc
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPL---VEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 1094 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~---~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR 1094 (1165)
||||||||.|+..+.... +..+ ..+|+.++.+ ++| .-.+.++.+|+++ +.|+.+.|+|+ ||
T Consensus 241 ILfIDEID~i~~~r~~~~-~~~d-~~~~r~l~~LL~~ld~--------~~~~~~v~VI~aT----N~~d~LDpAllR~GR 306 (398)
T PTZ00454 241 IIFIDEVDSIATKRFDAQ-TGAD-REVQRILLELLNQMDG--------FDQTTNVKVIMAT----NRADTLDPALLRPGR 306 (398)
T ss_pred EEEEECHhhhcccccccc-CCcc-HHHHHHHHHHHHHhhc--------cCCCCCEEEEEec----CCchhCCHHHcCCCc
Confidence 999999999987653211 1111 2355555444 443 2234578888876 47899999998 59
Q ss_pred CCeEEEcCCCCHHHHHHHHh
Q psy2392 1095 FPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|...++|+.++.++...|++
T Consensus 307 fd~~I~~~~P~~~~R~~Il~ 326 (398)
T PTZ00454 307 LDRKIEFPLPDRRQKRLIFQ 326 (398)
T ss_pred ccEEEEeCCcCHHHHHHHHH
Confidence 99999999999999988887
|
|
| >KOG0740|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-16 Score=183.11 Aligned_cols=206 Identities=26% Similarity=0.356 Sum_probs=163.2
Q ss_pred HHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 776 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 776 ~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
....|+++.|.+.++..+.+.+.++..|..++.+++.+ ++++||+||||+|||.|++++|.+.+..|+.+.++.++++
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p--~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREP--VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccc--cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 34567899999999999999999887777777777764 5899999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|+|+. +.+++.+|..|..
T Consensus 226 -~~Ge~-eK~vralf~vAr~------------------------------------------------------------ 243 (428)
T KOG0740|consen 226 -YVGES-EKLVRALFKVARS------------------------------------------------------------ 243 (428)
T ss_pred -ccChH-HHHHHHHHHHHHh------------------------------------------------------------
Confidence 99999 6789999877611
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 244 -------------------------------------------------------------------------------- 243 (428)
T KOG0740|consen 244 -------------------------------------------------------------------------------- 243 (428)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 1095 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~ 1095 (1165)
.+++||||||||++...+ +.+..+.++-=.-..|++..=. ++ ..-++|++|++. +.|+.+.-.+..||
T Consensus 244 ~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~---~s----~~~drvlvigaT----N~P~e~Dea~~Rrf 311 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGK---NS----APDDRVLVIGAT----NRPWELDEAARRRF 311 (428)
T ss_pred cCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccc---cC----CCCCeEEEEecC----CCchHHHHHHHHHh
Confidence 178999999999999887 3344455544333444444321 11 223589999986 59999999999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.-|+.++.++.+.-..+++ .+|+.++. .+++..++.||+.--
T Consensus 312 ~kr~yiplPd~etr~~~~~-----------~ll~~~~~--~l~~~d~~~l~~~Te 353 (428)
T KOG0740|consen 312 VKRLYIPLPDYETRSLLWK-----------QLLKEQPN--GLSDLDISLLAKVTE 353 (428)
T ss_pred hceeeecCCCHHHHHHHHH-----------HHHHhCCC--CccHHHHHHHHHHhc
Confidence 9999999999999998888 44544444 456777888877543
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-16 Score=188.10 Aligned_cols=212 Identities=20% Similarity=0.304 Sum_probs=142.0
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|++.+|+.+............ .-+.. .|+++||+||||||||++|+++|+.++.+|+.++++.+.+ +|+|.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~-~~gl~---~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~-~~vGe 302 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQAS-NYGLP---TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG-GIVGE 302 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHH-hcCCC---CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc-cccCh
Confidence 4789999999888764332100110 11121 3589999999999999999999999999999999998876 58988
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|..+
T Consensus 303 s-e~~l~~~f~~A------------------------------------------------------------------- 314 (489)
T CHL00195 303 S-ESRMRQMIRIA------------------------------------------------------------------- 314 (489)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 7 34455555441
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 315 -----------------------------------------------------------------------~--~~~P~I 321 (489)
T CHL00195 315 -----------------------------------------------------------------------E--ALSPCI 321 (489)
T ss_pred -----------------------------------------------------------------------H--hcCCcE
Confidence 0 015899
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
|||||||++.......+.... ...+...||..+++ ...++++|||+ ++|..+.|+|+ |||+..
T Consensus 322 L~IDEID~~~~~~~~~~d~~~-~~rvl~~lL~~l~~----------~~~~V~vIaTT----N~~~~Ld~allR~GRFD~~ 386 (489)
T CHL00195 322 LWIDEIDKAFSNSESKGDSGT-TNRVLATFITWLSE----------KKSPVFVVATA----NNIDLLPLEILRKGRFDEI 386 (489)
T ss_pred EEehhhhhhhccccCCCCchH-HHHHHHHHHHHHhc----------CCCceEEEEec----CChhhCCHHHhCCCcCCeE
Confidence 999999999875433111111 12344556666653 24567788884 68899999997 699999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+.++.++.++..+|++ ..+.. .+.. ...+..++.|++.+.. +-.+-|..++....
T Consensus 387 i~v~lP~~~eR~~Il~----~~l~~-------~~~~-~~~~~dl~~La~~T~G-------fSGAdI~~lv~eA~ 441 (489)
T CHL00195 387 FFLDLPSLEEREKIFK----IHLQK-------FRPK-SWKKYDIKKLSKLSNK-------FSGAEIEQSIIEAM 441 (489)
T ss_pred EEeCCcCHHHHHHHHH----HHHhh-------cCCC-cccccCHHHHHhhcCC-------CCHHHHHHHHHHHH
Confidence 9999999999999994 22221 1111 1224457788887743 34445655554443
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=187.72 Aligned_cols=177 Identities=28% Similarity=0.448 Sum_probs=129.1
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~ 263 (1165)
+|+|+++++..+.+.+.. ++.+......+. ..|.++||+||||||||++|+++|..++.+|+.++++++.+. |+|..
T Consensus 56 di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~-~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-~~g~~ 132 (495)
T TIGR01241 56 DVAGIDEAKEELMEIVDF-LKNPSKFTKLGA-KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVG 132 (495)
T ss_pred HhCCHHHHHHHHHHHHHH-HHCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH-Hhccc
Confidence 788999999988876653 232222111111 135789999999999999999999999999999999887653 55554
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEE
Q psy2392 264 VDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEI 343 (1165)
Q Consensus 264 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i 343 (1165)
...++++|..+
T Consensus 133 -~~~l~~~f~~a-------------------------------------------------------------------- 143 (495)
T TIGR01241 133 -ASRVRDLFEQA-------------------------------------------------------------------- 143 (495)
T ss_pred -HHHHHHHHHHH--------------------------------------------------------------------
Confidence 23344444331
Q ss_pred EEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEE
Q psy2392 344 EIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGII 423 (1165)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ii 423 (1165)
.. ..++||
T Consensus 144 ----------------------------------------------------------------------~~--~~p~Il 151 (495)
T TIGR01241 144 ----------------------------------------------------------------------KK--NAPCII 151 (495)
T ss_pred ----------------------------------------------------------------------Hh--cCCCEE
Confidence 11 147899
Q ss_pred EEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 424 FLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 424 fiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
||||||.++.+++... +.+.....+.+.||..++|-. ...++++|+++ +.|..++|+|+ |||+..
T Consensus 152 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~--------~~~~v~vI~aT----n~~~~ld~al~r~gRfd~~ 219 (495)
T TIGR01241 152 FIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------TNTGVIVIAAT----NRPDVLDPALLRPGRFDRQ 219 (495)
T ss_pred EEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc--------CCCCeEEEEec----CChhhcCHHHhcCCcceEE
Confidence 9999999998766522 223344567778888888632 34568888885 67889999998 599999
Q ss_pred EecCCCCHHHHHHHHh
Q psy2392 501 VELDSLSISDFTRIMT 516 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~ 516 (1165)
|.+..++.++..+|++
T Consensus 220 i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 220 VVVDLPDIKGREEILK 235 (495)
T ss_pred EEcCCCCHHHHHHHHH
Confidence 9999999999999994
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.1e-16 Score=184.90 Aligned_cols=170 Identities=22% Similarity=0.328 Sum_probs=124.7
Q ss_pred hcccchHHHHHHHHHHHHh---HhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRN---RWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~---~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gy 857 (1165)
++|.|++.+|+.+...... ..+..|+. .|+++||+||||||||++|+++|+.++.||+.++++.+.+. |
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~-------~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~-~ 299 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLP-------TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGG-I 299 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCC-------CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccc-c
Confidence 5889999999888764432 11222322 26899999999999999999999999999999999998876 9
Q ss_pred cccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCC
Q psy2392 858 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld 937 (1165)
+|++. ..++++|..|..
T Consensus 300 vGese-~~l~~~f~~A~~-------------------------------------------------------------- 316 (489)
T CHL00195 300 VGESE-SRMRQMIRIAEA-------------------------------------------------------------- 316 (489)
T ss_pred cChHH-HHHHHHHHHHHh--------------------------------------------------------------
Confidence 99874 456776654411
Q ss_pred CeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy2392 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 1017 (1165)
Q Consensus 938 ~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 1017 (1165)
.+
T Consensus 317 ------------------------------------------------------------------------------~~ 318 (489)
T CHL00195 317 ------------------------------------------------------------------------------LS 318 (489)
T ss_pred ------------------------------------------------------------------------------cC
Confidence 15
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~ 1095 (1165)
++||||||||++.....+.+.+..+ .-+...||..+.+ .+.++++||+. ++|+.+.|+|+ |||
T Consensus 319 P~IL~IDEID~~~~~~~~~~d~~~~-~rvl~~lL~~l~~----------~~~~V~vIaTT----N~~~~Ld~allR~GRF 383 (489)
T CHL00195 319 PCILWIDEIDKAFSNSESKGDSGTT-NRVLATFITWLSE----------KKSPVFVVATA----NNIDLLPLEILRKGRF 383 (489)
T ss_pred CcEEEehhhhhhhccccCCCCchHH-HHHHHHHHHHHhc----------CCCceEEEEec----CChhhCCHHHhCCCcC
Confidence 7899999999998753321111111 1233445554442 24567788775 58999999997 599
Q ss_pred CeEEEcCCCCHHHHHHHHh
Q psy2392 1096 PIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~ 1114 (1165)
...+.++.++.++..+|++
T Consensus 384 D~~i~v~lP~~~eR~~Il~ 402 (489)
T CHL00195 384 DEIFFLDLPSLEEREKIFK 402 (489)
T ss_pred CeEEEeCCcCHHHHHHHHH
Confidence 9999999999999999998
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-16 Score=186.76 Aligned_cols=180 Identities=21% Similarity=0.375 Sum_probs=128.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCC----------ceEEecc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAP----------FIKIEAT 252 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~----------~i~ld~s 252 (1165)
++|.|++..++.+..++..++.++.+....+.. +|.++||+||||||||++|+++|+.++.+ |+.+..+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~-~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLK-PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC-CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 478999999999999998777776655433222 35899999999999999999999998654 3444444
Q ss_pred ccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHH
Q psy2392 253 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 332 (1165)
Q Consensus 253 ~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1165)
++.++ |+|.. +..++.+|..+
T Consensus 261 eLl~k-yvGet-e~~ir~iF~~A--------------------------------------------------------- 281 (512)
T TIGR03689 261 ELLNK-YVGET-ERQIRLIFQRA--------------------------------------------------------- 281 (512)
T ss_pred hhccc-ccchH-HHHHHHHHHHH---------------------------------------------------------
Confidence 44442 55554 23344444331
Q ss_pred hhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHH
Q psy2392 333 LREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 412 (1165)
Q Consensus 333 ~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (1165)
T Consensus 282 -------------------------------------------------------------------------------- 281 (512)
T TIGR03689 282 -------------------------------------------------------------------------------- 281 (512)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhh--hccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 413 AINN--VEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 413 a~~~--~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
... ...++||||||||.+...+..+.+.+..+ .+...||..++|- ....++++|+++ +.|..++
T Consensus 282 -r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~-~il~~LL~~LDgl--------~~~~~ViVI~AT----N~~d~LD 347 (512)
T TIGR03689 282 -REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVET-TVVPQLLSELDGV--------ESLDNVIVIGAS----NREDMID 347 (512)
T ss_pred -HHHhhcCCCceEEEehhhhhhcccCCCccchHHH-HHHHHHHHHhccc--------ccCCceEEEecc----CChhhCC
Confidence 000 01478999999999997764422333322 3445788888873 234678888884 6788999
Q ss_pred hhhhC--CCCeeEecCCCCHHHHHHHHh
Q psy2392 491 PELQG--RFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 491 pel~~--R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+|++ ||+..|+|.+++.++..+|++
T Consensus 348 pALlRpGRfD~~I~~~~Pd~e~r~~Il~ 375 (512)
T TIGR03689 348 PAILRPGRLDVKIRIERPDAEAAADIFS 375 (512)
T ss_pred HhhcCccccceEEEeCCCCHHHHHHHHH
Confidence 99984 999999999999999999995
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0652|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-16 Score=168.21 Aligned_cols=177 Identities=27% Similarity=0.448 Sum_probs=139.7
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.+..++.+.+++..++.+..-+..++.. +|+++|+|||||+|||.+|++.|...+..|..+-+..+++. |+|.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~-pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM-fIGd 248 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIR-PPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGD 248 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCC-CCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh-hhcc
Confidence 489999999999999998877766555544332 46999999999999999999999999999999998888875 8888
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..++++.|..+
T Consensus 249 G-AkLVRDAFaLA------------------------------------------------------------------- 260 (424)
T KOG0652|consen 249 G-AKLVRDAFALA------------------------------------------------------------------- 260 (424)
T ss_pred h-HHHHHHHHHHh-------------------------------------------------------------------
Confidence 7 56677777552
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 261 -----------------------------------------------------------------------KE--kaP~I 267 (424)
T KOG0652|consen 261 -----------------------------------------------------------------------KE--KAPTI 267 (424)
T ss_pred -----------------------------------------------------------------------hc--cCCeE
Confidence 11 13889
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccc---cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCC
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 497 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~---Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~ 497 (1165)
|||||+|.|.+++.++. ......||+.+|.++ +|- -.++.|-+||++ ++-.-+.|+|+ ||+
T Consensus 268 IFIDElDAIGtKRfDSe--k~GDREVQRTMLELLNQLDGF--------ss~~~vKviAAT----NRvDiLDPALlRSGRL 333 (424)
T KOG0652|consen 268 IFIDELDAIGTKRFDSE--KAGDREVQRTMLELLNQLDGF--------SSDDRVKVIAAT----NRVDILDPALLRSGRL 333 (424)
T ss_pred EEEechhhhcccccccc--ccccHHHHHHHHHHHHhhcCC--------CCccceEEEeec----ccccccCHHHhhcccc
Confidence 99999999999877622 122335999877765 443 345667788884 45566899998 899
Q ss_pred CeeEecCCCCHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~ 516 (1165)
+..|+|+-++++...+|++
T Consensus 334 DRKIEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 334 DRKIEFPHPNEEARARILQ 352 (424)
T ss_pred cccccCCCCChHHHHHHHH
Confidence 9999999999999999995
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-16 Score=181.52 Aligned_cols=124 Identities=17% Similarity=0.297 Sum_probs=97.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.+++. .|+.||+.+|. ...|++||.++ +.+..+.|.+++|+.
T Consensus 121 ~~KV~IIDEah~Ls~~-------------A~NALLKtLEE----------Pp~~viFILaT----te~~kI~~TI~SRCq 173 (484)
T PRK14956 121 KYKVYIIDEVHMLTDQ-------------SFNALLKTLEE----------PPAHIVFILAT----TEFHKIPETILSRCQ 173 (484)
T ss_pred CCEEEEEechhhcCHH-------------HHHHHHHHhhc----------CCCceEEEeec----CChhhccHHHHhhhh
Confidence 4679999999999865 67799999986 24678888764 468889999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.+.|. ..+..+|+ .++++++..|++.+ +++.|...+++|+++.
T Consensus 174 ~-~~f~~ls~~~i~~~L~-----------~i~~~Egi--~~e~eAL~~Ia~~S--------~Gd~RdAL~lLeq~i~--- 228 (484)
T PRK14956 174 D-FIFKKVPLSVLQDYSE-----------KLCKIENV--QYDQEGLFWIAKKG--------DGSVRDMLSFMEQAIV--- 228 (484)
T ss_pred e-eeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CChHHHHHHHHHHHHH---
Confidence 5 5999999999988873 23445665 78999999999988 7899999999999863
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+. .. .||.+.|.+.++
T Consensus 229 ~~-~~---~it~~~V~~~lg 244 (484)
T PRK14956 229 FT-DS---KLTGVKIRKMIG 244 (484)
T ss_pred hC-CC---CcCHHHHHHHhC
Confidence 21 11 377777766553
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-16 Score=180.55 Aligned_cols=178 Identities=26% Similarity=0.450 Sum_probs=131.4
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|+|.+.+++.+.+.+..+..+..+....+.. +|.++||+||||||||++|+++|+.++.+|+.++++++... |+|
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~-~~g 207 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIG 207 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh-hcc
Confidence 3588999999999999998776665554433322 35899999999999999999999999999999999988764 777
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ ...++.+|..+
T Consensus 208 ~~-~~~i~~~f~~a------------------------------------------------------------------ 220 (389)
T PRK03992 208 EG-ARLVRELFELA------------------------------------------------------------------ 220 (389)
T ss_pred ch-HHHHHHHHHHH------------------------------------------------------------------
Confidence 65 33455554431
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 221 ------------------------------------------------------------------------~~--~~p~ 226 (389)
T PRK03992 221 ------------------------------------------------------------------------RE--KAPS 226 (389)
T ss_pred ------------------------------------------------------------------------Hh--cCCe
Confidence 00 1478
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccc---cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV---EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~---Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
||||||||.+...+.+.+. .....+|+.++.++ +|. ....++.+|+++ +.|+.+.|+|+ ||
T Consensus 227 IlfiDEiD~l~~~r~~~~~--~~~~~~~~~l~~lL~~ld~~--------~~~~~v~VI~aT----n~~~~ld~allRpgR 292 (389)
T PRK03992 227 IIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAEMDGF--------DPRGNVKIIAAT----NRIDILDPAILRPGR 292 (389)
T ss_pred EEEEechhhhhcccccCCC--CccHHHHHHHHHHHHhcccc--------CCCCCEEEEEec----CChhhCCHHHcCCcc
Confidence 9999999999877554221 11223555555544 331 134578888885 56788999998 59
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+..|.|++++.++..+|++
T Consensus 293 fd~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 293 FDRIIEVPLPDEEGRLEILK 312 (389)
T ss_pred CceEEEECCCCHHHHHHHHH
Confidence 99999999999999999994
|
|
| >KOG0652|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-16 Score=168.97 Aligned_cols=180 Identities=27% Similarity=0.428 Sum_probs=138.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
.+|.|.+..++++.+++..+.....-+..+.. .+|+++|+|||||+|||.+|++.|...+..|..+-++.+++. |+|.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi-~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQM-fIGd 248 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGI-RPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQM-FIGD 248 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCC-CCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhh-hhcc
Confidence 68999999999999999765433322222211 237999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..++++.|..|...
T Consensus 249 G-AkLVRDAFaLAKEk---------------------------------------------------------------- 263 (424)
T KOG0652|consen 249 G-AKLVRDAFALAKEK---------------------------------------------------------------- 263 (424)
T ss_pred h-HHHHHHHHHHhhcc----------------------------------------------------------------
Confidence 8 46788888766111
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.+.|
T Consensus 264 ----------------------------------------------------------------------------aP~I 267 (424)
T KOG0652|consen 264 ----------------------------------------------------------------------------APTI 267 (424)
T ss_pred ----------------------------------------------------------------------------CCeE
Confidence 4789
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
|||||+|.|.+.+..+ -.....-|||.+|.++-.- -|--.++.|-+|+++. +..-|.|+|+ ||+.-.
T Consensus 268 IFIDElDAIGtKRfDS--ek~GDREVQRTMLELLNQL-----DGFss~~~vKviAATN----RvDiLDPALlRSGRLDRK 336 (424)
T KOG0652|consen 268 IFIDELDAIGTKRFDS--EKAGDREVQRTMLELLNQL-----DGFSSDDRVKVIAATN----RVDILDPALLRSGRLDRK 336 (424)
T ss_pred EEEechhhhccccccc--cccccHHHHHHHHHHHHhh-----cCCCCccceEEEeecc----cccccCHHHhhccccccc
Confidence 9999999999886431 1122334999888765321 1344556777888853 4455779998 899999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
++|+-++++...+||.
T Consensus 337 IEfP~Pne~aRarIlQ 352 (424)
T KOG0652|consen 337 IEFPHPNEEARARILQ 352 (424)
T ss_pred ccCCCCChHHHHHHHH
Confidence 9999999999999998
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=185.13 Aligned_cols=182 Identities=21% Similarity=0.378 Sum_probs=130.6
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCC----------eEEEecC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAP----------FIKIEAT 850 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~----------fi~l~~s 850 (1165)
++|+|++..++.+..++..++....+...... .+|+++|||||||||||++|+++|+.++.+ |+.+..+
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl-~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDL-KPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccC-CCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 67999999999999999876554433322111 126899999999999999999999998654 5566666
Q ss_pred CcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHh
Q psy2392 851 KFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKR 930 (1165)
Q Consensus 851 e~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 930 (1165)
++.++ |+|+. +..++.+|..+...
T Consensus 261 eLl~k-yvGet-e~~ir~iF~~Ar~~------------------------------------------------------ 284 (512)
T TIGR03689 261 ELLNK-YVGET-ERQIRLIFQRAREK------------------------------------------------------ 284 (512)
T ss_pred hhccc-ccchH-HHHHHHHHHHHHHH------------------------------------------------------
Confidence 76666 77765 34456665444111
Q ss_pred hccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHH
Q psy2392 931 LREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK 1010 (1165)
Q Consensus 931 l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~ 1010 (1165)
T Consensus 285 -------------------------------------------------------------------------------- 284 (512)
T TIGR03689 285 -------------------------------------------------------------------------------- 284 (512)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchh
Q psy2392 1011 AINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 1090 (1165)
Q Consensus 1011 a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pe 1090 (1165)
+ ....+.||||||||.|+..++.+.+++..+ .+-..||..++| ...++++++|+++ +.|+.|.|+
T Consensus 285 a--~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~-~il~~LL~~LDg--------l~~~~~ViVI~AT----N~~d~LDpA 349 (512)
T TIGR03689 285 A--SDGRPVIVFFDEMDSIFRTRGSGVSSDVET-TVVPQLLSELDG--------VESLDNVIVIGAS----NREDMIDPA 349 (512)
T ss_pred h--hcCCCceEEEehhhhhhcccCCCccchHHH-HHHHHHHHHhcc--------cccCCceEEEecc----CChhhCCHh
Confidence 0 001467999999999997754322233322 133567777775 2345688888886 578899999
Q ss_pred hhc--cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1091 LQG--RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1091 l~g--R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|++ ||+..++|++++.++..+|++
T Consensus 350 LlRpGRfD~~I~~~~Pd~e~r~~Il~ 375 (512)
T TIGR03689 350 ILRPGRLDVKIRIERPDAEAAADIFS 375 (512)
T ss_pred hcCccccceEEEeCCCCHHHHHHHHH
Confidence 985 999999999999999999998
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0726|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=8e-17 Score=174.00 Aligned_cols=180 Identities=22% Similarity=0.385 Sum_probs=136.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
.+|.|.+..+.+|.+++..++....+..... ..+|++++|||+||+|||.||+++|+.....|+++-+|++.++ |.|+
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemG-ikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk-ylGd 262 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGD 262 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcC-CCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH-Hhcc
Confidence 6899999999999999986543332222111 1137999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
++ .++|++|+.|..+
T Consensus 263 Gp-klvRqlF~vA~e~---------------------------------------------------------------- 277 (440)
T KOG0726|consen 263 GP-KLVRELFRVAEEH---------------------------------------------------------------- 277 (440)
T ss_pred ch-HHHHHHHHHHHhc----------------------------------------------------------------
Confidence 95 6899999877211
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.++|
T Consensus 278 ----------------------------------------------------------------------------apSI 281 (440)
T KOG0726|consen 278 ----------------------------------------------------------------------------APSI 281 (440)
T ss_pred ----------------------------------------------------------------------------CCce
Confidence 4679
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
|||||||.|.+.+... ++...+| +||.+|.++-.- -|--+...+-+|.++ ++-..|.|+|. ||+.-.
T Consensus 282 vFiDEIdAiGtKRyds-~SggerE-iQrtmLELLNQl-----dGFdsrgDvKvimAT----nrie~LDPaLiRPGrIDrK 350 (440)
T KOG0726|consen 282 VFIDEIDAIGTKRYDS-NSGGERE-IQRTMLELLNQL-----DGFDSRGDVKVIMAT----NRIETLDPALIRPGRIDRK 350 (440)
T ss_pred EEeehhhhhccccccC-CCccHHH-HHHHHHHHHHhc-----cCccccCCeEEEEec----ccccccCHhhcCCCccccc
Confidence 9999999999986532 2222344 999888765421 022223345566665 46678889887 799999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
++|.-+++.--.+|++
T Consensus 351 Ief~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 351 IEFPLPDEKTKKKIFQ 366 (440)
T ss_pred cccCCCchhhhceeEE
Confidence 9999998888877775
|
|
| >KOG0726|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-16 Score=172.65 Aligned_cols=180 Identities=21% Similarity=0.388 Sum_probs=141.0
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
.+|.|.+..+..|.+++..++.++.+....+.. +|++++|||+||+|||.||+++|+.....|+++-.|++.++ |.|.
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGik-pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQk-ylGd 262 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIK-PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQK-YLGD 262 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC-CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHH-Hhcc
Confidence 488899999999999999887777665544332 46899999999999999999999999999999999999987 9998
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..+++.+|+.+
T Consensus 263 G-pklvRqlF~vA------------------------------------------------------------------- 274 (440)
T KOG0726|consen 263 G-PKLVRELFRVA------------------------------------------------------------------- 274 (440)
T ss_pred c-hHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 67788888763
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
-.+ .++|
T Consensus 275 -----------------------------------------------------------------------~e~--apSI 281 (440)
T KOG0726|consen 275 -----------------------------------------------------------------------EEH--APSI 281 (440)
T ss_pred -----------------------------------------------------------------------Hhc--CCce
Confidence 011 3789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
|||||||.+.+++.+++++. . ..+|+.+|.++-.- -|--....+-+|+++ ++-+.|+|+|. ||++..
T Consensus 282 vFiDEIdAiGtKRyds~Sgg-e-rEiQrtmLELLNQl-----dGFdsrgDvKvimAT----nrie~LDPaLiRPGrIDrK 350 (440)
T KOG0726|consen 282 VFIDEIDAIGTKRYDSNSGG-E-REIQRTMLELLNQL-----DGFDSRGDVKVIMAT----NRIETLDPALIRPGRIDRK 350 (440)
T ss_pred EEeehhhhhccccccCCCcc-H-HHHHHHHHHHHHhc-----cCccccCCeEEEEec----ccccccCHhhcCCCccccc
Confidence 99999999999988744321 2 24888887766321 011122345567763 56788999998 899999
Q ss_pred EecCCCCHHHHHHHHh
Q psy2392 501 VELDSLSISDFTRIMT 516 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~ 516 (1165)
|+|..+++..-.+|++
T Consensus 351 Ief~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 351 IEFPLPDEKTKKKIFQ 366 (440)
T ss_pred cccCCCchhhhceeEE
Confidence 9999999999888875
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.2e-16 Score=180.59 Aligned_cols=182 Identities=25% Similarity=0.424 Sum_probs=133.6
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
.+++|+|.+..++.+.+.+..++....+...... .+|.++||+||||||||++|+++|+.++.+|+.++++++.+. |+
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~-~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~-~~ 206 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGI-EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FI 206 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHh-hc
Confidence 3468999999999999998766544433322211 126899999999999999999999999999999999998876 88
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|.+ ...++++|..+..
T Consensus 207 g~~-~~~i~~~f~~a~~--------------------------------------------------------------- 222 (389)
T PRK03992 207 GEG-ARLVRELFELARE--------------------------------------------------------------- 222 (389)
T ss_pred cch-HHHHHHHHHHHHh---------------------------------------------------------------
Confidence 876 3456666544410
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
.++
T Consensus 223 -----------------------------------------------------------------------------~~p 225 (389)
T PRK03992 223 -----------------------------------------------------------------------------KAP 225 (389)
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 146
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
+||||||||.|+..+...+ ......+|+.|+.++..-. |.....++.+|++++ .|+.+.|.|+ |||.
T Consensus 226 ~IlfiDEiD~l~~~r~~~~--~~~~~~~~~~l~~lL~~ld-----~~~~~~~v~VI~aTn----~~~~ld~allRpgRfd 294 (389)
T PRK03992 226 SIIFIDEIDAIAAKRTDSG--TSGDREVQRTLMQLLAEMD-----GFDPRGNVKIIAATN----RIDILDPAILRPGRFD 294 (389)
T ss_pred eEEEEechhhhhcccccCC--CCccHHHHHHHHHHHHhcc-----ccCCCCCEEEEEecC----ChhhCCHHHcCCccCc
Confidence 8999999999987654321 1112236776666553210 122345788888864 6778889998 5999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|++++.++..+||+
T Consensus 295 ~~I~v~~P~~~~R~~Il~ 312 (389)
T PRK03992 295 RIIEVPLPDEEGRLEILK 312 (389)
T ss_pred eEEEECCCCHHHHHHHHH
Confidence 999999999999999998
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-15 Score=164.46 Aligned_cols=191 Identities=22% Similarity=0.379 Sum_probs=142.1
Q ss_pred HHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 766 IKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 766 ~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.+...||+.| ++.+||+++++.+...+.....+- ..+.|+||+||||.||||||..+|++++.++-
T Consensus 16 ~e~~lRP~~l-----~efiGQ~~vk~~L~ifI~AAk~r~---------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k 81 (332)
T COG2255 16 IERSLRPKTL-----DEFIGQEKVKEQLQIFIKAAKKRG---------EALDHVLLFGPPGLGKTTLAHIIANELGVNLK 81 (332)
T ss_pred hhcccCcccH-----HHhcChHHHHHHHHHHHHHHHhcC---------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE
Confidence 3446788777 778899999999999987652221 12589999999999999999999999999887
Q ss_pred EEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHH
Q psy2392 846 KIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 925 (1165)
Q Consensus 846 ~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~ 925 (1165)
..+++-+-.+ +.+. . +| .
T Consensus 82 ~tsGp~leK~-------gDla-a-------------------------------iL-t---------------------- 99 (332)
T COG2255 82 ITSGPALEKP-------GDLA-A-------------------------------IL-T---------------------- 99 (332)
T ss_pred ecccccccCh-------hhHH-H-------------------------------HH-h----------------------
Confidence 7666554333 1111 0 01 0
Q ss_pred HHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
T Consensus 100 -------------------------------------------------------------------------------- 99 (332)
T COG2255 100 -------------------------------------------------------------------------------- 99 (332)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeee--------eeccCceEEEEecC
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASG 1077 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~--------~~~~t~~ilfI~~g 1077 (1165)
..+.+-|+||||||++... |-.-|.|.||+..+..-. ..++-.+..+|+|+
T Consensus 100 --------~Le~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 100 --------NLEEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred --------cCCcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 1124559999999999987 666899999987765433 35666666677665
Q ss_pred CCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1078 AFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1078 af~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. +.--+..+|..||.+...|+-++.+||.+|+... ..+| ++.+++++..+||+.|-
T Consensus 159 T----r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~--------a~~l-----~i~i~~~~a~eIA~rSR 214 (332)
T COG2255 159 T----RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRS--------AKIL-----GIEIDEEAALEIARRSR 214 (332)
T ss_pred c----ccccccchhHHhcCCeeeeecCCHHHHHHHHHHH--------HHHh-----CCCCChHHHHHHHHhcc
Confidence 3 5666778999999999999999999999999822 2232 34788999999998764
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-16 Score=181.45 Aligned_cols=94 Identities=17% Similarity=0.256 Sum_probs=78.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|.+... .|+.||+.+|.. ..|+.||.++ +.|..+.|.+++||-.
T Consensus 122 ~KV~IIDEah~Ls~~-------------A~NALLKtLEEP----------p~~viFILaT----te~~kI~~TI~SRCq~ 174 (484)
T PRK14956 122 YKVYIIDEVHMLTDQ-------------SFNALLKTLEEP----------PAHIVFILAT----TEFHKIPETILSRCQD 174 (484)
T ss_pred CEEEEEechhhcCHH-------------HHHHHHHHhhcC----------CCceEEEeec----CChhhccHHHHhhhhe
Confidence 459999999999775 789999999963 3577888665 4688999999999975
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+.|.+++.+++.+.|+ .++..+|+ .|+++|+..||+.|-..
T Consensus 175 -~~f~~ls~~~i~~~L~-----------~i~~~Egi--~~e~eAL~~Ia~~S~Gd 215 (484)
T PRK14956 175 -FIFKKVPLSVLQDYSE-----------KLCKIENV--QYDQEGLFWIAKKGDGS 215 (484)
T ss_pred -eeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCCh
Confidence 6999999999988888 45666786 78999999999887644
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-15 Score=162.32 Aligned_cols=142 Identities=18% Similarity=0.273 Sum_probs=96.7
Q ss_pred ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--------ceeecCceEEEEEeCCcccCCCCCC
Q psy2392 418 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDL 489 (1165)
Q Consensus 418 ~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--------~~~~~t~~ilfI~~gaf~~~~p~~l 489 (1165)
+++.|+||||||++.+.. -.-|.|.||+..++.- ...++-.+..+|+|+ ++.--+
T Consensus 102 e~~DVLFIDEIHrl~~~v-------------EE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT----Tr~G~l 164 (332)
T COG2255 102 EEGDVLFIDEIHRLSPAV-------------EEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT----TRAGML 164 (332)
T ss_pred CcCCeEEEehhhhcChhH-------------HHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec----cccccc
Confidence 357799999999999884 4478899998776542 234555566666663 345557
Q ss_pred chhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 490 IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 490 ~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
...|+.||.+...+.-++.+|+.+|+... ..+ .++.+++++..+||+.+-. ++ |-..++
T Consensus 165 t~PLrdRFGi~~rlefY~~~eL~~Iv~r~--------a~~-----l~i~i~~~~a~eIA~rSRG----TP----RIAnRL 223 (332)
T COG2255 165 TNPLRDRFGIIQRLEFYTVEELEEIVKRS--------AKI-----LGIEIDEEAALEIARRSRG----TP----RIANRL 223 (332)
T ss_pred cchhHHhcCCeeeeecCCHHHHHHHHHHH--------HHH-----hCCCCChHHHHHHHHhccC----Cc----HHHHHH
Confidence 77899999999999999999999999632 122 3568889999999998832 23 444555
Q ss_pred HHHHHHHhhcccCCCeeEEcccccccccccC
Q psy2392 570 MEKLLEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 570 ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
+.++-+-.-.. ..-.|+.+.+++.+..+
T Consensus 224 LrRVRDfa~V~---~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 224 LRRVRDFAQVK---GDGDIDRDIADKALKML 251 (332)
T ss_pred HHHHHHHHHHh---cCCcccHHHHHHHHHHh
Confidence 55554322111 11346666666665544
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=182.33 Aligned_cols=235 Identities=23% Similarity=0.360 Sum_probs=168.4
Q ss_pred ccEecchhhHHHHHHHHH---hhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALR---NRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~---~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gy 259 (1165)
.+|.|.++|++.+.+.+. .+-+...+.. + .|.+++|+||||||||.|||++|.+.+.||+.++.|+|++- |
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGa--k---iPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem-f 223 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGA--K---IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-F 223 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhccc--c---cccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh-h
Confidence 478899999988888664 2211222222 1 35899999999999999999999999999999999999986 8
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCC
Q psy2392 260 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339 (1165)
Q Consensus 260 vG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (1165)
||-+ ...+|++|.++
T Consensus 224 VGvG-AsRVRdLF~qA---------------------------------------------------------------- 238 (596)
T COG0465 224 VGVG-ASRVRDLFEQA---------------------------------------------------------------- 238 (596)
T ss_pred cCCC-cHHHHHHHHHh----------------------------------------------------------------
Confidence 8888 56788999773
Q ss_pred CcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhcc
Q psy2392 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 419 (1165)
Q Consensus 340 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 419 (1165)
..+ .
T Consensus 239 --------------------------------------------------------------------------kk~--a 242 (596)
T COG0465 239 --------------------------------------------------------------------------KKN--A 242 (596)
T ss_pred --------------------------------------------------------------------------hcc--C
Confidence 112 3
Q ss_pred ceEEEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 420 NGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
+|||||||||.+...+..+ +++...+|..-++||.-|||-. ..+.|++|+++ ++|+-++|+|+ ||
T Consensus 243 P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--------~~~gviviaaT----NRpdVlD~ALlRpgR 310 (596)
T COG0465 243 PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------GNEGVIVIAAT----NRPDVLDPALLRPGR 310 (596)
T ss_pred CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--------CCCceEEEecC----CCcccchHhhcCCCC
Confidence 6999999999999887543 3455677888889999999843 23456677773 78999999998 89
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
|+..|....++-....+||+ ....++.+.-+- -+..||+.... ..||-..+-+.|..+-
T Consensus 311 FDRqI~V~~PDi~gRe~Ilk-------------vH~~~~~l~~~V-dl~~iAr~tpG------fsGAdL~nl~NEAal~- 369 (596)
T COG0465 311 FDRQILVELPDIKGREQILK-------------VHAKNKPLAEDV-DLKKIARGTPG------FSGADLANLLNEAALL- 369 (596)
T ss_pred cceeeecCCcchhhHHHHHH-------------HHhhcCCCCCcC-CHHHHhhhCCC------cccchHhhhHHHHHHH-
Confidence 99999999999999999995 112233333111 12336666644 5677655545455443
Q ss_pred hhcccCCCeeEEcccccccccccC
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
.+......||...+.++...+
T Consensus 370 ---aar~n~~~i~~~~i~ea~drv 390 (596)
T COG0465 370 ---AARRNKKEITMRDIEEAIDRV 390 (596)
T ss_pred ---HHHhcCeeEeccchHHHHHHH
Confidence 344444567766666655543
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-15 Score=182.76 Aligned_cols=178 Identities=29% Similarity=0.457 Sum_probs=130.8
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++++++.+.+.+.. ++........ ....|.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|.
T Consensus 55 ~di~g~~~~k~~l~~~~~~-l~~~~~~~~~-g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~-~~g~ 131 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDF-LKNPSKFTKL-GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGV 131 (495)
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHhc-CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH-Hhcc
Confidence 6889999999998877653 2211111100 01125899999999999999999999999999999999988766 7776
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++++|..|..
T Consensus 132 ~~-~~l~~~f~~a~~----------------------------------------------------------------- 145 (495)
T TIGR01241 132 GA-SRVRDLFEQAKK----------------------------------------------------------------- 145 (495)
T ss_pred cH-HHHHHHHHHHHh-----------------------------------------------------------------
Confidence 53 345555544310
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
..++|
T Consensus 146 ---------------------------------------------------------------------------~~p~I 150 (495)
T TIGR01241 146 ---------------------------------------------------------------------------NAPCI 150 (495)
T ss_pred ---------------------------------------------------------------------------cCCCE
Confidence 14689
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
|||||||.|+...+.. ++.+.....+.+.||..|+|. ....++++|+++ +.|..+.|+|+ |||..
T Consensus 151 l~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--------~~~~~v~vI~aT----n~~~~ld~al~r~gRfd~ 218 (495)
T TIGR01241 151 IFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--------GTNTGVIVIAAT----NRPDVLDPALLRPGRFDR 218 (495)
T ss_pred EEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc--------cCCCCeEEEEec----CChhhcCHHHhcCCcceE
Confidence 9999999999875432 222334445667788888753 234568888886 47888999998 49999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.++++.++.++..+||+
T Consensus 219 ~i~i~~Pd~~~R~~il~ 235 (495)
T TIGR01241 219 QVVVDLPDIKGREEILK 235 (495)
T ss_pred EEEcCCCCHHHHHHHHH
Confidence 99999999999999998
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >KOG0729|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.8e-16 Score=164.96 Aligned_cols=180 Identities=27% Similarity=0.423 Sum_probs=141.1
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
-.+|.|-.+.++.+++.+..++.++.-+-.++.. +|+++|+|||||+|||.+|+++|+-.+.-|+++=.|+++++ |+|
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgid-ppkgvllygppgtgktl~aravanrtdacfirvigselvqk-yvg 253 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGID-PPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVG 253 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCC-CCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH-Hhh
Confidence 3589999999999999998776655444444433 47899999999999999999999999999999999999997 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
++ ..+++++|+.+
T Consensus 254 eg-armvrelf~ma------------------------------------------------------------------ 266 (435)
T KOG0729|consen 254 EG-ARMVRELFEMA------------------------------------------------------------------ 266 (435)
T ss_pred hh-HHHHHHHHHHh------------------------------------------------------------------
Confidence 98 67889998773
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
..+.-+
T Consensus 267 --------------------------------------------------------------------------rtkkac 272 (435)
T KOG0729|consen 267 --------------------------------------------------------------------------RTKKAC 272 (435)
T ss_pred --------------------------------------------------------------------------cccceE
Confidence 001468
Q ss_pred EEEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
|||+||||.+...+.+. .++| ..||+.+|.++-.-- |-=...||-+.++ +++|..|.|+|+ ||++
T Consensus 273 iiffdeidaiggarfddg~ggd---nevqrtmleli~qld-----gfdprgnikvlma----tnrpdtldpallrpgrld 340 (435)
T KOG0729|consen 273 IIFFDEIDAIGGARFDDGAGGD---NEVQRTMLELINQLD-----GFDPRGNIKVLMA----TNRPDTLDPALLRPGRLD 340 (435)
T ss_pred EEEeeccccccCccccCCCCCc---HHHHHHHHHHHHhcc-----CCCCCCCeEEEee----cCCCCCcCHhhcCCcccc
Confidence 99999999999877652 2333 349999888763210 1113346666666 478999999998 8999
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
..|+|.-++-+-..+|++
T Consensus 341 rkvef~lpdlegrt~i~k 358 (435)
T KOG0729|consen 341 RKVEFGLPDLEGRTHIFK 358 (435)
T ss_pred cceeccCCcccccceeEE
Confidence 999999999988888885
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-15 Score=183.11 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=78.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|.+... .|+.||++||.. ..|+.||+++ ++++.+++.+++||-
T Consensus 119 r~KVIIIDEah~LT~~-------------A~NALLKtLEEP----------P~~v~FILaT----td~~KIp~TIrSRCq 171 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEEP----------PPHVKFILAT----TDPQKIPVTVLSRCL 171 (830)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHHHhc----------CCCeEEEEEE----CChhhccchhhhheE
Confidence 3569999999999765 688999999962 3567777775 478899999999995
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
++.|++|+.+++.++|+ .+++.||+ .+++++++.|++.|-..
T Consensus 172 -~f~Fk~Ls~eeIv~~L~-----------~Il~~EgI--~id~eAL~lIA~~A~Gs 213 (830)
T PRK07003 172 -QFNLKQMPAGHIVSHLE-----------RILGEERI--AFEPQALRLLARAAQGS 213 (830)
T ss_pred -EEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCCC
Confidence 57999999999999888 55667887 67999999999887543
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=177.80 Aligned_cols=176 Identities=22% Similarity=0.424 Sum_probs=128.0
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|++..++.+.+++..+..+..+....+.. +|.++||+||||||||++|+++|+.++.+|+.+..+++.+. |+|.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k-~~Ge 260 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK-YLGD 260 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh-hcch
Confidence 478999999999999997665554444333222 35799999999999999999999999999999999988764 7776
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ...++++|..+
T Consensus 261 ~-~~~vr~lF~~A------------------------------------------------------------------- 272 (438)
T PTZ00361 261 G-PKLVRELFRVA------------------------------------------------------------------- 272 (438)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 33344444331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 273 -----------------------------------------------------------------------~~--~~P~I 279 (438)
T PTZ00361 273 -----------------------------------------------------------------------EE--NAPSI 279 (438)
T ss_pred -----------------------------------------------------------------------Hh--CCCcE
Confidence 00 14789
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhh---cccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDL---LPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~l---L~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
|||||||.+..++.+.. +.+ ..+|+.+ |..++|- ....++.+|+++ +.++.+.|+|+ ||
T Consensus 280 LfIDEID~l~~kR~~~~sgg~---~e~qr~ll~LL~~Ldg~--------~~~~~V~VI~AT----Nr~d~LDpaLlRpGR 344 (438)
T PTZ00361 280 VFIDEIDAIGTKRYDATSGGE---KEIQRTMLELLNQLDGF--------DSRGDVKVIMAT----NRIESLDPALIRPGR 344 (438)
T ss_pred EeHHHHHHHhccCCCCCCccc---HHHHHHHHHHHHHHhhh--------cccCCeEEEEec----CChHHhhHHhccCCe
Confidence 99999999987654321 211 1244444 4444442 123467788874 57888999987 79
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+..|+|.+++.+++.+|+.
T Consensus 345 fd~~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 345 IDRKIEFPNPDEKTKRRIFE 364 (438)
T ss_pred eEEEEEeCCCCHHHHHHHHH
Confidence 99999999999999999994
|
|
| >KOG0651|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=7e-16 Score=168.74 Aligned_cols=184 Identities=26% Similarity=0.372 Sum_probs=144.0
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
+.+.|.-..+.++.+.+..++....++.+... .+|.+++||||||+|||.+|+++|..++.+|+.+.++++.++ |+|+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgI-k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k-yiGE 209 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGI-KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK-YIGE 209 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCC-CCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh-hccc
Confidence 68889999999999999887766666554322 237999999999999999999999999999999999999988 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..++++.|+.|..+
T Consensus 210 s-aRlIRemf~yA~~~---------------------------------------------------------------- 224 (388)
T KOG0651|consen 210 S-ARLIRDMFRYAREV---------------------------------------------------------------- 224 (388)
T ss_pred H-HHHHHHHHHHHhhh----------------------------------------------------------------
Confidence 8 67899998877222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
+++|
T Consensus 225 ----------------------------------------------------------------------------~pci 228 (388)
T KOG0651|consen 225 ----------------------------------------------------------------------------IPCI 228 (388)
T ss_pred ----------------------------------------------------------------------------CceE
Confidence 4589
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
+|+||||.+.+...+ .++...++ ||+.|..++.+ -+|.-.-..+-.||+|+ +|+-|.|+|+ |||.-.
T Consensus 229 ifmdeiDAigGRr~s-e~Ts~dre-iqrTLMeLlnq-----mdgfd~l~rVk~ImatN----rpdtLdpaLlRpGRldrk 297 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFS-EGTSSDRE-IQRTLMELLNQ-----MDGFDTLHRVKTIMATN----RPDTLDPALLRPGRLDRK 297 (388)
T ss_pred EeehhhhhhccEEec-cccchhHH-HHHHHHHHHHh-----hccchhcccccEEEecC----CccccchhhcCCccccce
Confidence 999999999998643 33333444 99998887763 12333334466789885 8999999998 799988
Q ss_pred EEcCCCCHHHHHHHHhhhHH
Q psy2392 1099 VELDSLSISDFTRIMTSTNV 1118 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~ 1118 (1165)
++.+-+.+.--..|++.|..
T Consensus 298 ~~iPlpne~~r~~I~Kih~~ 317 (388)
T KOG0651|consen 298 VEIPLPNEQARLGILKIHVQ 317 (388)
T ss_pred eccCCcchhhceeeEeeccc
Confidence 88887777666667775544
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-15 Score=175.31 Aligned_cols=138 Identities=21% Similarity=0.354 Sum_probs=101.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.++.. .|+.||+.+|.. ..+++||+++ ++|..+.|.+.+|+.
T Consensus 117 ~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE~p----------~~~vv~Ilat----tn~~kl~~~L~SR~~ 169 (472)
T PRK14962 117 KYKVYIIDEVHMLTKE-------------AFNALLKTLEEP----------PSHVVFVLAT----TNLEKVPPTIISRCQ 169 (472)
T ss_pred CeEEEEEEChHHhHHH-------------HHHHHHHHHHhC----------CCcEEEEEEe----CChHhhhHHHhcCcE
Confidence 4679999999999754 566899999852 3456777653 357789999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+++.+++..++. ..+..+|+ .+++++++.|++.+ ++++|.+.+.++++..
T Consensus 170 -vv~f~~l~~~el~~~L~-----------~i~~~egi--~i~~eal~~Ia~~s--------~GdlR~aln~Le~l~~--- 224 (472)
T PRK14962 170 -VIEFRNISDELIIKRLQ-----------EVAEAEGI--EIDREALSFIAKRA--------SGGLRDALTMLEQVWK--- 224 (472)
T ss_pred -EEEECCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------CCCHHHHHHHHHHHHH---
Confidence 57999999999998884 22334555 78899999999977 6899999999998763
Q ss_pred cccCCCeeEEcccccccccccCccccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGDLSINEDLSRYDSGM 613 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~~~~~~dls~~i~~~ 613 (1165)
+. . . .||.+.|++.++.... ..++.+++++
T Consensus 225 ~~-~-~--~It~e~V~~~l~~~~~-~~i~~li~si 254 (472)
T PRK14962 225 FS-E-G--KITLETVHEALGLIPI-EVVRDYINAI 254 (472)
T ss_pred hc-C-C--CCCHHHHHHHHcCCCH-HHHHHHHHHH
Confidence 21 1 1 2888888877665432 3455555533
|
|
| >KOG0740|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-15 Score=172.08 Aligned_cols=205 Identities=26% Similarity=0.373 Sum_probs=162.0
Q ss_pred HhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccc
Q psy2392 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259 (1165)
Q Consensus 180 ~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gy 259 (1165)
....++.|.+.++..+.+++.++..|+.++.+++++ +.++||+||||+|||.|++++|.+.+..|+.+.++.++++ |
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p--~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK-~ 226 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREP--VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK-Y 226 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhccccc--cchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh-c
Confidence 344799999999999999999888888888888875 5899999999999999999999999999999999999997 9
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCC
Q psy2392 260 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339 (1165)
Q Consensus 260 vG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (1165)
+|.+ +.+++.+|..+
T Consensus 227 ~Ge~-eK~vralf~vA---------------------------------------------------------------- 241 (428)
T KOG0740|consen 227 VGES-EKLVRALFKVA---------------------------------------------------------------- 241 (428)
T ss_pred cChH-HHHHHHHHHHH----------------------------------------------------------------
Confidence 9999 78888888763
Q ss_pred CcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhcc
Q psy2392 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 419 (1165)
Q Consensus 340 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 419 (1165)
+..+
T Consensus 242 ----------------------------------------------------------------------------r~~q 245 (428)
T KOG0740|consen 242 ----------------------------------------------------------------------------RSLQ 245 (428)
T ss_pred ----------------------------------------------------------------------------HhcC
Confidence 1127
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
++||||||||++...+.+ +..+.++.---..|++. +|.. ...-++|++|+|+ +.|+.++-+++.||.-
T Consensus 246 PsvifidEidslls~Rs~-~e~e~srr~ktefLiq~-~~~~------s~~~drvlvigaT----N~P~e~Dea~~Rrf~k 313 (428)
T KOG0740|consen 246 PSVIFIDEIDSLLSKRSD-NEHESSRRLKTEFLLQF-DGKN------SAPDDRVLVIGAT----NRPWELDEAARRRFVK 313 (428)
T ss_pred CeEEEechhHHHHhhcCC-cccccchhhhhHHHhhh-cccc------CCCCCeEEEEecC----CCchHHHHHHHHHhhc
Confidence 899999999999988743 33344433233344443 3321 1234589999884 7899999999999999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
++.++.++.+....+++ .+|..++. .+++..++.|++....
T Consensus 314 r~yiplPd~etr~~~~~-----------~ll~~~~~--~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 314 RLYIPLPDYETRSLLWK-----------QLLKEQPN--GLSDLDISLLAKVTEG 354 (428)
T ss_pred eeeecCCCHHHHHHHHH-----------HHHHhCCC--CccHHHHHHHHHHhcC
Confidence 99999999999888883 33444433 5567888999988854
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-15 Score=176.39 Aligned_cols=179 Identities=22% Similarity=0.414 Sum_probs=129.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|.|++..++.+.+++..++....+...... .++.++||+||||||||++|+++|+.++.+|+.++++++.++ |+|.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi-~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k-~~Ge 260 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGI-KPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQK-YLGD 260 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCC-CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhh-hcch
Confidence 68899999999999999765433322221111 126899999999999999999999999999999999998877 8887
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++++|..|..
T Consensus 261 ~~-~~vr~lF~~A~~----------------------------------------------------------------- 274 (438)
T PTZ00361 261 GP-KLVRELFRVAEE----------------------------------------------------------------- 274 (438)
T ss_pred HH-HHHHHHHHHHHh-----------------------------------------------------------------
Confidence 63 446666544400
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
..++|
T Consensus 275 ---------------------------------------------------------------------------~~P~I 279 (438)
T PTZ00361 275 ---------------------------------------------------------------------------NAPSI 279 (438)
T ss_pred ---------------------------------------------------------------------------CCCcE
Confidence 14679
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
|||||||.+...+... ++.+ ..+|+.++.++..- -|.....++.+|++. +.|+.+.|.|+ |||..
T Consensus 280 LfIDEID~l~~kR~~~~sgg~---~e~qr~ll~LL~~L-----dg~~~~~~V~VI~AT----Nr~d~LDpaLlRpGRfd~ 347 (438)
T PTZ00361 280 VFIDEIDAIGTKRYDATSGGE---KEIQRTMLELLNQL-----DGFDSRGDVKVIMAT----NRIESLDPALIRPGRIDR 347 (438)
T ss_pred EeHHHHHHHhccCCCCCCccc---HHHHHHHHHHHHHH-----hhhcccCCeEEEEec----CChHHhhHHhccCCeeEE
Confidence 9999999998765321 1111 12566555444210 011234567888875 47888999987 79999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.++|++++.++..+||.
T Consensus 348 ~I~~~~Pd~~~R~~Il~ 364 (438)
T PTZ00361 348 KIEFPNPDEKTKRRIFE 364 (438)
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 99999999999999998
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.6e-15 Score=181.24 Aligned_cols=107 Identities=20% Similarity=0.341 Sum_probs=86.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|++++. .|+.||+.||. ...|+.||++. +.+..+.|.+++|+-
T Consensus 119 k~KViIIDEAh~LT~e-------------AqNALLKtLEE----------PP~~vrFILaT----Te~~kLl~TIlSRCq 171 (944)
T PRK14949 119 RFKVYLIDEVHMLSRS-------------SFNALLKTLEE----------PPEHVKFLLAT----TDPQKLPVTVLSRCL 171 (944)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhc----------cCCCeEEEEEC----CCchhchHHHHHhhe
Confidence 5789999999999765 67799999996 24567777763 466779999999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
++.|++|+.+++...|. ..+..++ +.|++++++.|++.+ +++.|.+.+++++++
T Consensus 172 -~f~fkpLs~eEI~~~L~-----------~il~~Eg--I~~edeAL~lIA~~S--------~Gd~R~ALnLLdQal 225 (944)
T PRK14949 172 -QFNLKSLTQDEIGTQLN-----------HILTQEQ--LPFEAEALTLLAKAA--------NGSMRDALSLTDQAI 225 (944)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 57999999999998884 2233345 478999999999887 678999999999887
|
|
| >KOG0729|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-16 Score=164.76 Aligned_cols=180 Identities=27% Similarity=0.401 Sum_probs=134.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
.+|.|-.+.++.+++.+..++.....+-.+. ..+|+++|||||||+|||.+|+++|+..+.-|+++-+|+++++ |+|+
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lg-idppkgvllygppgtgktl~aravanrtdacfirvigselvqk-yvge 254 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLG-IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQK-YVGE 254 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcC-CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHH-Hhhh
Confidence 6899999999999999886432211111111 1137999999999999999999999999999999999999999 9999
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+ ..+++++|+.|+.
T Consensus 255 g-armvrelf~mart----------------------------------------------------------------- 268 (435)
T KOG0729|consen 255 G-ARMVRELFEMART----------------------------------------------------------------- 268 (435)
T ss_pred h-HHHHHHHHHHhcc-----------------------------------------------------------------
Confidence 9 5789999877611
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
+ .-+|
T Consensus 269 --------------------------------------------------------------------k-------kaci 273 (435)
T KOG0729|consen 269 --------------------------------------------------------------------K-------KACI 273 (435)
T ss_pred --------------------------------------------------------------------c-------ceEE
Confidence 1 3479
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~ 1098 (1165)
||+||||.|.+.+... |.+ +..-|||.+|.++-.- -|--...||-..++ .++|.-|.|+|+ ||+.-.
T Consensus 274 iffdeidaiggarfdd-g~g-gdnevqrtmleli~ql-----dgfdprgnikvlma----tnrpdtldpallrpgrldrk 342 (435)
T KOG0729|consen 274 IFFDEIDAIGGARFDD-GAG-GDNEVQRTMLELINQL-----DGFDPRGNIKVLMA----TNRPDTLDPALLRPGRLDRK 342 (435)
T ss_pred EEeeccccccCccccC-CCC-CcHHHHHHHHHHHHhc-----cCCCCCCCeEEEee----cCCCCCcCHhhcCCcccccc
Confidence 9999999999886431 111 1234999998876421 02222345544444 368999999998 799999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
|+|.-++.+-...|++
T Consensus 343 vef~lpdlegrt~i~k 358 (435)
T KOG0729|consen 343 VEFGLPDLEGRTHIFK 358 (435)
T ss_pred eeccCCcccccceeEE
Confidence 9999888887777776
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=184.97 Aligned_cols=150 Identities=21% Similarity=0.335 Sum_probs=103.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC-CCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~-~l~pel~~R~ 497 (1165)
...|+||||||.+++. .|+.||+.+|.+ ++++|++. +.+|+ .++|.|++|+
T Consensus 109 ~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~g------------~IiLI~aT---Tenp~~~l~~aL~SR~ 160 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-------------QQDALLPWVENG------------TITLIGAT---TENPYFEVNKALVSRS 160 (725)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHhcCc------------eEEEEEec---CCChHhhhhhHhhccc
Confidence 3579999999999765 466899988863 24566653 23553 5889999997
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
.+ +.|++|+.+++..|+. ..+.+....+..+ .+.+++++++.|++.+ .+++|.+.++++.++...
T Consensus 161 ~v-~~l~pLs~edi~~IL~----~~l~~~~~~~g~~--~v~I~deaL~~La~~s--------~GD~R~lln~Le~a~~~~ 225 (725)
T PRK13341 161 RL-FRLKSLSDEDLHQLLK----RALQDKERGYGDR--KVDLEPEAEKHLVDVA--------NGDARSLLNALELAVEST 225 (725)
T ss_pred cc-eecCCCCHHHHHHHHH----HHHHHHHhhcCCc--ccCCCHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhc
Confidence 65 7999999999999995 2333222222233 3578999999999876 578999999999977422
Q ss_pred hcccCCC-eeEEcccccccccccCcc--------cc-ccccccccc
Q psy2392 578 SFNSNNI-SLLVDADYVNSRLGDLSI--------NE-DLSRYDSGM 613 (1165)
Q Consensus 578 ~~~~~~~-~~~i~~~~v~~~~~~~~~--------~~-dls~~i~~~ 613 (1165)
. .... .+.||.+.+++.+++... .+ .+|+|++++
T Consensus 226 ~--~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksi 269 (725)
T PRK13341 226 P--PDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSL 269 (725)
T ss_pred c--cCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHH
Confidence 1 1111 245787777776655221 11 277788766
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-15 Score=180.72 Aligned_cols=215 Identities=21% Similarity=0.344 Sum_probs=144.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|.+++++.+.+.+.. ++.......... ..|.++||+||||||||++|+++|..++.||+.++++++.+. |+|.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~-~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~-~~g~ 259 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSF-LKKPERFTAVGA-KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGV 259 (638)
T ss_pred HhccChHHHHHHHHHHHHH-HhCHHHHhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH-hhhh
Confidence 4789999999888886643 222222111111 135799999999999999999999999999999999887542 4443
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++++|..+
T Consensus 260 ~-~~~vr~lF~~A------------------------------------------------------------------- 271 (638)
T CHL00176 260 G-AARVRDLFKKA------------------------------------------------------------------- 271 (638)
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 12233333221
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 272 -----------------------------------------------------------------------~~--~~P~I 278 (638)
T CHL00176 272 -----------------------------------------------------------------------KE--NSPCI 278 (638)
T ss_pred -----------------------------------------------------------------------hc--CCCcE
Confidence 11 14789
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|||||||.+...+..+. +.+...+.+.+.||..++|.. ...++++|+++ +.|..+.|+|+ |||+.
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~--------~~~~ViVIaaT----N~~~~LD~ALlRpGRFd~ 346 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK--------GNKGVIVIAAT----NRVDILDAALLRPGRFDR 346 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc--------CCCCeeEEEec----CchHhhhhhhhccccCce
Confidence 99999999987654322 222334456667777777632 34578888884 56778899998 69999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.|.|..++.+++.+||+ ..++. .. ..++..+..|+..+ +.+-.+-|.+++....
T Consensus 347 ~I~v~lPd~~~R~~IL~----~~l~~-------~~---~~~d~~l~~lA~~t-------~G~sgaDL~~lvneAa 400 (638)
T CHL00176 347 QITVSLPDREGRLDILK----VHARN-------KK---LSPDVSLELIARRT-------PGFSGADLANLLNEAA 400 (638)
T ss_pred EEEECCCCHHHHHHHHH----HHHhh-------cc---cchhHHHHHHHhcC-------CCCCHHHHHHHHHHHH
Confidence 99999999999999994 22211 11 12345566776655 3445667888877654
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.3e-15 Score=184.26 Aligned_cols=94 Identities=20% Similarity=0.351 Sum_probs=76.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .|+.||+.||.. ..|+.||++. +.|..++|.+++||-
T Consensus 119 k~KViIIDEAh~LT~e-------------AqNALLKtLEEP----------P~~vrFILaT----Te~~kLl~TIlSRCq 171 (944)
T PRK14949 119 RFKVYLIDEVHMLSRS-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTVLSRCL 171 (944)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhcc----------CCCeEEEEEC----CCchhchHHHHHhhe
Confidence 3569999999999765 899999999963 3466677763 467789999999995
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
++.|++|+.+++.+.|+ ..+..+|+ .|++++++.|++.|-.
T Consensus 172 -~f~fkpLs~eEI~~~L~-----------~il~~EgI--~~edeAL~lIA~~S~G 212 (944)
T PRK14949 172 -QFNLKSLTQDEIGTQLN-----------HILTQEQL--PFEAEALTLLAKAANG 212 (944)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 57999999999998888 34455665 7899999999987754
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=177.49 Aligned_cols=124 Identities=19% Similarity=0.311 Sum_probs=94.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.+++. .++.||+.||. ...|+.||+++ +++..+.+.+++||.
T Consensus 119 r~KVIIIDEah~LT~~-------------A~NALLKtLEE----------PP~~v~FILaT----td~~KIp~TIrSRCq 171 (830)
T PRK07003 119 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEE----------PPPHVKFILAT----TDPQKIPVTVLSRCL 171 (830)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHHHh----------cCCCeEEEEEE----CChhhccchhhhheE
Confidence 4789999999999765 56699999986 34577888774 568889999999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|++|+.+++.++|. ..++.+|+ .+++++++.|++.+ +++.|...+++++.+.
T Consensus 172 -~f~Fk~Ls~eeIv~~L~-----------~Il~~EgI--~id~eAL~lIA~~A--------~GsmRdALsLLdQAia--- 226 (830)
T PRK07003 172 -QFNLKQMPAGHIVSHLE-----------RILGEERI--AFEPQALRLLARAA--------QGSMRDALSLTDQAIA--- 226 (830)
T ss_pred -EEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 56999999999998884 33455665 67999999999988 5778999998888763
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+.. -.|+.+.|.+.++
T Consensus 227 ~~~----~~It~~~V~~~LG 242 (830)
T PRK07003 227 YSA----NEVTETAVSGMLG 242 (830)
T ss_pred hcc----CCcCHHHHHHHhC
Confidence 211 1256666655444
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=163.78 Aligned_cols=140 Identities=14% Similarity=0.265 Sum_probs=93.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee--------eceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~--------~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
...++||||||++.+. .|..|+.++++..+.. +........+.+|++. +.+..+.
T Consensus 81 ~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t----~~~~~l~ 143 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT----TRAGMLT 143 (305)
T ss_pred cCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec----CCccccC
Confidence 4679999999999765 3446777777544321 0011222335556553 4567788
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
++|++||...+.|.+++.+++.+|+.. .....+ +.++++++++|++.+ .+.+|.+.+++
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~-----------~~~~~~--~~~~~~al~~ia~~~--------~G~pR~~~~ll 202 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSR-----------SAGLLN--VEIEPEAALEIARRS--------RGTPRIANRLL 202 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHH-----------HHHHhC--CCcCHHHHHHHHHHh--------CCCcchHHHHH
Confidence 999999999999999999999999951 112223 478999999999887 45678888888
Q ss_pred HHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+++..-.... .. -.|+.+.|++.+..
T Consensus 203 ~~~~~~a~~~-~~--~~it~~~v~~~l~~ 228 (305)
T TIGR00635 203 RRVRDFAQVR-GQ--KIINRDIALKALEM 228 (305)
T ss_pred HHHHHHHHHc-CC--CCcCHHHHHHHHHH
Confidence 8765332111 11 23677777665543
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-15 Score=179.01 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=76.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|.+... .|+.||+.||.. ..|+.||.++ ++|+.+.|.+++||-
T Consensus 124 r~KViIIDEah~Ls~~-------------AaNALLKTLEEP----------P~~v~FILaT----tep~kLlpTIrSRCq 176 (700)
T PRK12323 124 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPQKIPVTVLSRCL 176 (700)
T ss_pred CceEEEEEChHhcCHH-------------HHHHHHHhhccC----------CCCceEEEEe----CChHhhhhHHHHHHH
Confidence 3469999999999876 788999999962 3566787775 478899999999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
. +.|++++.+++.+.|+ .++..+|+ .+++++++.|++.|-.
T Consensus 177 ~-f~f~~ls~eei~~~L~-----------~Il~~Egi--~~d~eAL~~IA~~A~G 217 (700)
T PRK12323 177 Q-FNLKQMPPGHIVSHLD-----------AILGEEGI--AHEVNALRLLAQAAQG 217 (700)
T ss_pred h-cccCCCChHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 5 6999999999998888 45566777 6789999999887643
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-15 Score=177.71 Aligned_cols=173 Identities=28% Similarity=0.482 Sum_probs=140.3
Q ss_pred hcccchHHHHHHHHHHHHh-----HhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRN-----RWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~-----~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
.+|.|.+++++++.+.+.. .|..+|- ..|+++||+||||+|||+|||++|.+.+.||+.+++|+|++.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGa-------kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGA-------KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhccc-------ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5789999999998887752 2222221 126999999999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|||.+. +.+|++|..|.++
T Consensus 223 -fVGvGA-sRVRdLF~qAkk~----------------------------------------------------------- 241 (596)
T COG0465 223 -FVGVGA-SRVRDLFEQAKKN----------------------------------------------------------- 241 (596)
T ss_pred -hcCCCc-HHHHHHHHHhhcc-----------------------------------------------------------
Confidence 999995 5699999887444
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 242 -------------------------------------------------------------------------------- 241 (596)
T COG0465 242 -------------------------------------------------------------------------------- 241 (596)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-- 1092 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~-- 1092 (1165)
.++||||||||++.+.+.-+ +++...+|-.-+.||--|+|.. ..+.|..|+++ ++|+-+.|+|+
T Consensus 242 -aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~--------~~~gviviaaT----NRpdVlD~ALlRp 308 (596)
T COG0465 242 -APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG--------GNEGVIVIAAT----NRPDVLDPALLRP 308 (596)
T ss_pred -CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--------CCCceEEEecC----CCcccchHhhcCC
Confidence 45799999999999986432 3455567777788999999853 22456666665 58888999999
Q ss_pred ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1093 GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1093 gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|||...|..+.++-....+||+
T Consensus 309 gRFDRqI~V~~PDi~gRe~Ilk 330 (596)
T COG0465 309 GRFDRQILVELPDIKGREQILK 330 (596)
T ss_pred CCcceeeecCCcchhhHHHHHH
Confidence 7999999999999999999998
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=175.30 Aligned_cols=125 Identities=22% Similarity=0.322 Sum_probs=96.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.+++. .++.||+.+|.. ..++.||.++ +.|..+.+.+++|+.
T Consensus 118 k~KV~IIDEVh~LS~~-------------A~NALLKtLEEP----------P~~v~FILaT----td~~kIp~TIlSRCq 170 (702)
T PRK14960 118 RFKVYLIDEVHMLSTH-------------SFNALLKTLEEP----------PEHVKFLFAT----TDPQKLPITVISRCL 170 (702)
T ss_pred CcEEEEEechHhcCHH-------------HHHHHHHHHhcC----------CCCcEEEEEE----CChHhhhHHHHHhhh
Confidence 5679999999999865 456899999862 3456677664 457778889999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|++|+.+++.+.|. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++++.
T Consensus 171 ~-feFkpLs~eEI~k~L~-----------~Il~kEgI--~id~eAL~~IA~~S--------~GdLRdALnLLDQaIa--- 225 (702)
T PRK14960 171 Q-FTLRPLAVDEITKHLG-----------AILEKEQI--AADQDAIWQIAESA--------QGSLRDALSLTDQAIA--- 225 (702)
T ss_pred e-eeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 6999999999998883 33455665 78899999999887 6789999999988763
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
|. . -.|+.+.|++.++.
T Consensus 226 yg--~--g~IT~edV~~lLG~ 242 (702)
T PRK14960 226 YG--Q--GAVHHQDVKEMLGL 242 (702)
T ss_pred hc--C--CCcCHHHHHHHhcc
Confidence 31 1 24788888776663
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.8e-15 Score=175.35 Aligned_cols=93 Identities=19% Similarity=0.357 Sum_probs=74.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|.++.. .|+.||+.+|.. ..+++||++.. +|..+.|.+++||.
T Consensus 117 ~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE~p----------~~~vv~Ilatt----n~~kl~~~L~SR~~ 169 (472)
T PRK14962 117 KYKVYIIDEVHMLTKE-------------AFNALLKTLEEP----------PSHVVFVLATT----NLEKVPPTIISRCQ 169 (472)
T ss_pred CeEEEEEEChHHhHHH-------------HHHHHHHHHHhC----------CCcEEEEEEeC----ChHhhhHHHhcCcE
Confidence 3569999999999764 788999999952 24567776543 57789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|.+++.+++..+|+ ..++.+|+ .++++|+..|++.+.
T Consensus 170 v-v~f~~l~~~el~~~L~-----------~i~~~egi--~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 170 V-IEFRNISDELIIKRLQ-----------EVAEAEGI--EIDREALSFIAKRAS 209 (472)
T ss_pred E-EEECCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhC
Confidence 5 7999999999998888 44455676 788999999998764
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-14 Score=169.70 Aligned_cols=80 Identities=26% Similarity=0.467 Sum_probs=61.3
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
..++|+|.+.+++.+.+++..+..+..+....+.. +|.++||+||||||||++|+++|+.++.+|+++..+++... |+
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~-~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~-~~ 197 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIE-PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-YI 197 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH-hh
Confidence 34589999999999999987665555444333221 35799999999999999999999999999998887665442 44
Q ss_pred cc
Q psy2392 261 GR 262 (1165)
Q Consensus 261 G~ 262 (1165)
|.
T Consensus 198 g~ 199 (364)
T TIGR01242 198 GE 199 (364)
T ss_pred hH
Confidence 43
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=176.21 Aligned_cols=124 Identities=22% Similarity=0.363 Sum_probs=94.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|++++. .|+.||+.+|. ...|+.||.+. ++|..+.|.+++|+
T Consensus 119 ~~KV~IIDEah~Ls~~-------------a~NALLKtLEE----------Pp~~v~FIL~T----t~~~kLl~TI~SRC- 170 (647)
T PRK07994 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEE----------PPEHVKFLLAT----TDPQKLPVTILSRC- 170 (647)
T ss_pred CCEEEEEechHhCCHH-------------HHHHHHHHHHc----------CCCCeEEEEec----CCccccchHHHhhh-
Confidence 5779999999999876 56799999996 34677888873 56778999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..+.|++|+.+++.+.|. ..+..+|+ .++++++..|+..+ ++..|...+++++++..
T Consensus 171 ~~~~f~~Ls~~ei~~~L~-----------~il~~e~i--~~e~~aL~~Ia~~s--------~Gs~R~Al~lldqaia~-- 227 (647)
T PRK07994 171 LQFHLKALDVEQIRQQLE-----------HILQAEQI--PFEPRALQLLARAA--------DGSMRDALSLTDQAIAS-- 227 (647)
T ss_pred eEeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 557999999999998884 23344554 78999999999887 67799999999887632
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. + -.|+.+.|++.++
T Consensus 228 -~--~--~~it~~~v~~~lg 242 (647)
T PRK07994 228 -G--N--GQVTTDDVSAMLG 242 (647)
T ss_pred -c--C--CCcCHHHHHHHHc
Confidence 1 1 1256666655444
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=175.58 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=94.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.++.. .++.||+.||. ...|++||.++ ++|..+.|.++|||.
T Consensus 124 r~KViIIDEah~Ls~~-------------AaNALLKTLEE----------PP~~v~FILaT----tep~kLlpTIrSRCq 176 (700)
T PRK12323 124 RFKVYMIDEVHMLTNH-------------AFNAMLKTLEE----------PPEHVKFILAT----TDPQKIPVTVLSRCL 176 (700)
T ss_pred CceEEEEEChHhcCHH-------------HHHHHHHhhcc----------CCCCceEEEEe----CChHhhhhHHHHHHH
Confidence 5789999999999865 56699999986 34577888774 578889999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.+.|. ..+..+|+ .+++++++.|++.+ +++.|...+++++.+.
T Consensus 177 ~-f~f~~ls~eei~~~L~-----------~Il~~Egi--~~d~eAL~~IA~~A--------~Gs~RdALsLLdQaia--- 231 (700)
T PRK12323 177 Q-FNLKQMPPGHIVSHLD-----------AILGEEGI--AHEVNALRLLAQAA--------QGSMRDALSLTDQAIA--- 231 (700)
T ss_pred h-cccCCCChHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 6999999999988873 23445565 67899999999887 6788999998887663
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+.. -.|+.+.|++.++
T Consensus 232 ~~~----~~It~~~V~~~LG 247 (700)
T PRK12323 232 YSA----GNVSEEAVRGMLG 247 (700)
T ss_pred hcc----CCcCHHHHHHHhC
Confidence 211 1356666655444
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.4e-15 Score=173.58 Aligned_cols=126 Identities=29% Similarity=0.417 Sum_probs=90.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC-CCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~-~l~pel~~R~ 497 (1165)
...||||||||++++. .|+.||+.+|.+. ++||+++ +.+|. .+.|.|++|+
T Consensus 92 ~~~vL~IDEi~~l~~~-------------~q~~LL~~le~~~------------iilI~at---t~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 92 RRTILFIDEIHRFNKA-------------QQDALLPHVEDGT------------ITLIGAT---TENPSFEVNPALLSRA 143 (413)
T ss_pred CceEEEEechhhhCHH-------------HHHHHHHHhhcCc------------EEEEEeC---CCChhhhccHHHhccc
Confidence 4679999999999765 5668999998632 4455553 23443 6889999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
. .+.|.+|+.+++.+++. ..+... ..|+ +.+++++++.|++.+ +++.|.+.++++.+...
T Consensus 144 ~-~~~~~~ls~e~i~~lL~----~~l~~~-----~~~~-i~i~~~al~~l~~~s--------~Gd~R~aln~Le~~~~~- 203 (413)
T PRK13342 144 Q-VFELKPLSEEDIEQLLK----RALEDK-----ERGL-VELDDEALDALARLA--------NGDARRALNLLELAALG- 203 (413)
T ss_pred e-eeEeCCCCHHHHHHHHH----HHHHHh-----hcCC-CCCCHHHHHHHHHhC--------CCCHHHHHHHHHHHHHc-
Confidence 4 57999999999999984 122111 1243 478999999998876 57899999999987642
Q ss_pred hcccCCCeeEEccccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
...|+.+.+++.++.
T Consensus 204 -------~~~It~~~v~~~~~~ 218 (413)
T PRK13342 204 -------VDSITLELLEEALQK 218 (413)
T ss_pred -------cCCCCHHHHHHHHhh
Confidence 123677777666554
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=174.28 Aligned_cols=124 Identities=22% Similarity=0.285 Sum_probs=95.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.+++. .++.||..+|. ..+|+.||.++ ++|..+.+.+++|+-
T Consensus 119 ~~kV~iIDE~~~ls~~-------------a~naLLk~LEe----------pp~~~~fIlat----td~~kl~~tI~SRc~ 171 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH-------------SFNALLKTLEE----------PPSHVKFILAT----TDHHKLPVTVLSRCL 171 (509)
T ss_pred CcEEEEEEChHhcCHH-------------HHHHHHHHHhc----------cCCCeEEEEEE----CChHhchHHHHHHhh
Confidence 5789999999999865 56699999996 24567777764 467788889999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|++++.+++.+.+. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++ +
T Consensus 172 ~-~~f~~l~~~~i~~~l~-----------~il~~egi--~~~~~al~~ia~~s--------~GslR~al~lLdq~i---a 226 (509)
T PRK14958 172 Q-FHLAQLPPLQIAAHCQ-----------HLLKEENV--EFENAALDLLARAA--------NGSVRDALSLLDQSI---A 226 (509)
T ss_pred h-hhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHH---h
Confidence 5 6999999999887763 34556675 67899999999887 578999999999875 3
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. . -.||.+.|.+.++
T Consensus 227 ~~-~---~~It~~~V~~~lg 242 (509)
T PRK14958 227 YG-N---GKVLIADVKTMLG 242 (509)
T ss_pred cC-C---CCcCHHHHHHHHC
Confidence 32 1 2477777776555
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=165.95 Aligned_cols=113 Identities=19% Similarity=0.353 Sum_probs=78.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--------eccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--------IIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--------~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
..+++||||||++... +|..|++.+|+..+..-.+ ...-..+.+|+++. .+..+.
T Consensus 102 ~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~----~~~~l~ 164 (328)
T PRK00080 102 EGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT----RAGLLT 164 (328)
T ss_pred cCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC----CcccCC
Confidence 4679999999999754 5666778888654332111 11112356666654 566788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCcee
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
++|.+||..+++|++++.+++.+||+ ...+..++ .++++++..|++.+-..=+.+.++
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~-----------~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~ 222 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVK-----------RSARILGV--EIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHH
Confidence 99999999999999999999999998 22333455 789999999998776543333333
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-14 Score=186.22 Aligned_cols=121 Identities=21% Similarity=0.200 Sum_probs=81.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 496 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R 496 (1165)
.+|||||||||.++.... +...-..||..|+|... ...+++|++|||+ +.|..++|+|+ ||
T Consensus 1732 SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~-----~~s~~~VIVIAAT----NRPD~LDPALLRPGR 1794 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCE-----RCSTRNILVIAST----HIPQKVDPALIAPNK 1794 (2281)
T ss_pred CCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccc-----cCCCCCEEEEEeC----CCcccCCHhHcCCCC
Confidence 599999999999987621 11123467777876321 1246789999994 68999999999 69
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
|+..|.+..|+..+..+++. .++.+.|+.+.-+...++.+|+.+ +++-++-|.+++..++
T Consensus 1795 FDR~I~Ir~Pd~p~R~kiL~-----------ILl~tkg~~L~~~~vdl~~LA~~T-------~GfSGADLanLvNEAa 1854 (2281)
T CHL00206 1795 LNTCIKIRRLLIPQQRKHFF-----------TLSYTRGFHLEKKMFHTNGFGSIT-------MGSNARDLVALTNEAL 1854 (2281)
T ss_pred CCeEEEeCCCCchhHHHHHH-----------HHHhhcCCCCCcccccHHHHHHhC-------CCCCHHHHHHHHHHHH
Confidence 99999999999888777762 112334554432222356666655 3455566777665554
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-14 Score=176.55 Aligned_cols=93 Identities=22% Similarity=0.375 Sum_probs=76.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|++... .|+.||+.+|.. ..|+.||.+. ++|..+.|.+++|| .
T Consensus 120 ~KV~IIDEah~Ls~~-------------a~NALLKtLEEP----------p~~v~FIL~T----t~~~kLl~TI~SRC-~ 171 (647)
T PRK07994 120 FKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTILSRC-L 171 (647)
T ss_pred CEEEEEechHhCCHH-------------HHHHHHHHHHcC----------CCCeEEEEec----CCccccchHHHhhh-e
Confidence 459999999999876 788999999963 3567777763 47888999999998 5
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
++.|++|+.+++.+.|+ ..+..+|+ .+++++++.|++.|-.
T Consensus 172 ~~~f~~Ls~~ei~~~L~-----------~il~~e~i--~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 172 QFHLKALDVEQIRQQLE-----------HILQAEQI--PFEPRALQLLARAADG 212 (647)
T ss_pred EeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 57999999999998888 44556676 7899999999987654
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=175.33 Aligned_cols=93 Identities=22% Similarity=0.287 Sum_probs=75.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .++.||+.+|.. .+|+.||.+. ++|+.+.+.+++||-
T Consensus 119 ~~kV~iIDE~~~ls~~-------------a~naLLk~LEep----------p~~~~fIlat----td~~kl~~tI~SRc~ 171 (509)
T PRK14958 119 RFKVYLIDEVHMLSGH-------------SFNALLKTLEEP----------PSHVKFILAT----TDHHKLPVTVLSRCL 171 (509)
T ss_pred CcEEEEEEChHhcCHH-------------HHHHHHHHHhcc----------CCCeEEEEEE----CChHhchHHHHHHhh
Confidence 3569999999999876 678999999963 3566777664 578889999999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++.+.|. .+++.+|+ .++++|++.|++.|-
T Consensus 172 ~-~~f~~l~~~~i~~~l~-----------~il~~egi--~~~~~al~~ia~~s~ 211 (509)
T PRK14958 172 Q-FHLAQLPPLQIAAHCQ-----------HLLKEENV--EFENAALDLLARAAN 211 (509)
T ss_pred h-hhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 6999999999988777 56677887 678999999988764
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=174.59 Aligned_cols=92 Identities=25% Similarity=0.370 Sum_probs=75.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|.+... .++.||+++|.. ..|+.||.++ ++|..+.+.+++||-+
T Consensus 119 ~KV~IIDEVh~LS~~-------------A~NALLKtLEEP----------P~~v~FILaT----td~~kIp~TIlSRCq~ 171 (702)
T PRK14960 119 FKVYLIDEVHMLSTH-------------SFNALLKTLEEP----------PEHVKFLFAT----TDPQKLPITVISRCLQ 171 (702)
T ss_pred cEEEEEechHhcCHH-------------HHHHHHHHHhcC----------CCCcEEEEEE----CChHhhhHHHHHhhhe
Confidence 469999999999775 678999999963 2455677664 4677888999999964
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++|++|+.+++.+.|. .+++.+|+ .++++|+..||+.|-
T Consensus 172 -feFkpLs~eEI~k~L~-----------~Il~kEgI--~id~eAL~~IA~~S~ 210 (702)
T PRK14960 172 -FTLRPLAVDEITKHLG-----------AILEKEQI--AADQDAIWQIAESAQ 210 (702)
T ss_pred -eeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 7999999999998888 56677887 788999999998764
|
|
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=162.27 Aligned_cols=139 Identities=15% Similarity=0.254 Sum_probs=92.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--------ceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--------~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
..+|+||||||++... ++..|++.+|+..+..- .....-.++.+|+++ +.+..+.
T Consensus 102 ~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at----~~~~~l~ 164 (328)
T PRK00080 102 EGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGAT----TRAGLLT 164 (328)
T ss_pred cCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeec----CCcccCC
Confidence 4679999999999754 34456677775433210 001111235566664 4566788
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
+.|++||..++.|.+++.+++.+|+.. ..... .+.++++++++|++.+ ++..|.+.+++
T Consensus 165 ~~L~sRf~~~~~l~~~~~~e~~~il~~-----------~~~~~--~~~~~~~~~~~ia~~~--------~G~pR~a~~~l 223 (328)
T PRK00080 165 SPLRDRFGIVQRLEFYTVEELEKIVKR-----------SARIL--GVEIDEEGALEIARRS--------RGTPRIANRLL 223 (328)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHH-----------HHHHc--CCCcCHHHHHHHHHHc--------CCCchHHHHHH
Confidence 999999999999999999999999951 12223 4578999999999877 45568888888
Q ss_pred HHHHHHhhcccCCCeeEEcccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+++..-.... ..-.|+.+.+++.+.
T Consensus 224 ~~~~~~a~~~---~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 224 RRVRDFAQVK---GDGVITKEIADKALD 248 (328)
T ss_pred HHHHHHHHHc---CCCCCCHHHHHHHHH
Confidence 8765432211 112366666666553
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-14 Score=169.99 Aligned_cols=130 Identities=17% Similarity=0.295 Sum_probs=98.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|.+++. .++.||..+|. ...+++||+++ +.+..+.+.+++|+.
T Consensus 128 ~~KVvIIDEa~~Ls~~-------------a~naLLk~LEe----------pp~~~vfI~aT----te~~kI~~tI~SRc~ 180 (507)
T PRK06645 128 KHKIFIIDEVHMLSKG-------------AFNALLKTLEE----------PPPHIIFIFAT----TEVQKIPATIISRCQ 180 (507)
T ss_pred CcEEEEEEChhhcCHH-------------HHHHHHHHHhh----------cCCCEEEEEEe----CChHHhhHHHHhcce
Confidence 5789999999999754 56689999985 24577787764 456678889999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|++++.+++.+++. ..++.+|+ .+++++++.|++.+ +++.|.+.+.+++++.-
T Consensus 181 -~~ef~~ls~~el~~~L~-----------~i~~~egi--~ie~eAL~~Ia~~s--------~GslR~al~~Ldkai~~-- 236 (507)
T PRK06645 181 -RYDLRRLSFEEIFKLLE-----------YITKQENL--KTDIEALRIIAYKS--------EGSARDAVSILDQAASM-- 236 (507)
T ss_pred -EEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 57999999999999884 33455665 67899999999876 67899999999998632
Q ss_pred cccCCCeeEEcccccccccccCc
Q psy2392 579 FNSNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
.. ...-.||.+.|++.++...
T Consensus 237 -~~-~~~~~It~~~V~~llg~~~ 257 (507)
T PRK06645 237 -SA-KSDNIISPQVINQMLGLVD 257 (507)
T ss_pred -hc-cCCCCcCHHHHHHHHCCCC
Confidence 11 1112588888887766443
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=175.20 Aligned_cols=178 Identities=24% Similarity=0.399 Sum_probs=125.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|.+++++.+.+.+.. ++......... ...+.++||+||||||||++|+++|..++.||+.++++++.+. |+|.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g-~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~-~~g~ 259 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSF-LKKPERFTAVG-AKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM-FVGV 259 (638)
T ss_pred HhccChHHHHHHHHHHHHH-HhCHHHHhhcc-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH-hhhh
Confidence 6789999999998887643 22211111111 1126899999999999999999999999999999999987654 5554
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++++|..|.
T Consensus 260 ~~-~~vr~lF~~A~------------------------------------------------------------------ 272 (638)
T CHL00176 260 GA-ARVRDLFKKAK------------------------------------------------------------------ 272 (638)
T ss_pred hH-HHHHHHHHHHh------------------------------------------------------------------
Confidence 42 23444443330
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...++|
T Consensus 273 --------------------------------------------------------------------------~~~P~I 278 (638)
T CHL00176 273 --------------------------------------------------------------------------ENSPCI 278 (638)
T ss_pred --------------------------------------------------------------------------cCCCcE
Confidence 014679
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
+||||||.++..+..+ ++.+...+.+...||..++|. ....++++|++. +.|..+.|.|+ |||..
T Consensus 279 LfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~--------~~~~~ViVIaaT----N~~~~LD~ALlRpGRFd~ 346 (638)
T CHL00176 279 VFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF--------KGNKGVIVIAAT----NRVDILDAALLRPGRFDR 346 (638)
T ss_pred EEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc--------cCCCCeeEEEec----CchHhhhhhhhccccCce
Confidence 9999999998765332 222223334556677667653 234578888886 46777888888 59999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.|..++.++..+||+
T Consensus 347 ~I~v~lPd~~~R~~IL~ 363 (638)
T CHL00176 347 QITVSLPDREGRLDILK 363 (638)
T ss_pred EEEECCCCHHHHHHHHH
Confidence 99999999999999998
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-14 Score=159.94 Aligned_cols=94 Identities=26% Similarity=0.354 Sum_probs=79.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+.|++|||.|.++.. .|..|+..||....+|+| .||| +.++.+++.+.+||.
T Consensus 129 ~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~s~~trF--------iLIc------nylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSD-------------AQAALRRTMEDFSRTTRF--------ILIC------NYLSRIIRPLVSRCQ 181 (346)
T ss_pred cceEEEEechhhhhHH-------------HHHHHHHHHhccccceEE--------EEEc------CChhhCChHHHhhHH
Confidence 3469999999999987 888999999987766655 3343 578899999999999
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
-+ .|++|..++....|+ .+...||+ .++++|++.|++++-.
T Consensus 182 Kf-rFk~L~d~~iv~rL~-----------~Ia~~E~v--~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 182 KF-RFKKLKDEDIVDRLE-----------KIASKEGV--DIDDDALKLIAKISDG 222 (346)
T ss_pred Hh-cCCCcchHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcCC
Confidence 75 899999999999888 66788899 7889999999998754
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-14 Score=166.03 Aligned_cols=92 Identities=25% Similarity=0.360 Sum_probs=71.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||+|||+|.+... .|+.|++++|-..-+| . ||.++ +.++.++|.|++|+.+
T Consensus 100 ~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~~~t--------~--~il~~----n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 100 HKIVILDEADSMTSG-------------AQQALRRTMEIYSNTT--------R--FALAC----NTSSKIIEPIQSRCAI 152 (319)
T ss_pred eEEEEEechhhcCHH-------------HHHHHHHHHhcccCCc--------e--EEEEe----CCccccchhHHHhhhc
Confidence 469999999999765 7889999998432222 2 33332 3567889999999964
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++|++|+.+++.++|. ..++.+|+ .++++++++|++.+-
T Consensus 153 -i~f~~l~~~~l~~~L~-----------~i~~~egi--~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 153 -VRFSRLSDQEILGRLM-----------KVVEAEKV--PYVPEGLEAIIFTAD 191 (319)
T ss_pred -ccCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 6999999999998888 55667788 678999999988664
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-14 Score=168.66 Aligned_cols=125 Identities=17% Similarity=0.257 Sum_probs=95.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|+++.. .|+.||+.+|.. ..++.||+++ +++..+.+.+++|+.
T Consensus 119 ~~kViIIDEa~~ls~~-------------a~naLLK~LEep----------p~~v~fIL~T----td~~kil~tI~SRc~ 171 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQ-------------SFNALLKTLEEP----------PEYVKFILAT----TDYHKIPVTILSRCI 171 (546)
T ss_pred CcEEEEEechhhccHH-------------HHHHHHHHHhcC----------CCCceEEEEE----CChhhhhhhHHHhee
Confidence 5779999999999765 677999999962 3566677653 457778888999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|++|+.+++.+.|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 -~~~f~~Ls~~eI~~~L~-----------~il~~egi--~~e~~Al~~Ia~~s--------~GdlR~alnlLek~i~--- 226 (546)
T PRK14957 172 -QLHLKHISQADIKDQLK-----------IILAKENI--NSDEQSLEYIAYHA--------KGSLRDALSLLDQAIS--- 226 (546)
T ss_pred -eEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 46999999999988873 33445564 78999999999887 5779999999999873
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
|.. -.|+.+.|++.++.
T Consensus 227 ~~~----~~It~~~V~~~l~~ 243 (546)
T PRK14957 227 FCG----GELKQAQIKQMLGI 243 (546)
T ss_pred hcc----CCCCHHHHHHHHcc
Confidence 211 13777777766553
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.4e-14 Score=159.11 Aligned_cols=106 Identities=16% Similarity=0.308 Sum_probs=76.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeee--------eeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~--------~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
...++||||||++... .|..|+.++++..+..=. .......+.+|++. +.|..+.
T Consensus 81 ~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t----~~~~~l~ 143 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGAT----TRAGMLT 143 (305)
T ss_pred cCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEec----CCccccC
Confidence 4579999999999764 667788888865432100 11222335555554 4567788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+.|.+||...+.|++++.+++.+|++. .++..++ .++++++++|++.+-..
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~-----------~~~~~~~--~~~~~al~~ia~~~~G~ 194 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSR-----------SAGLLNV--EIEPEAALEIARRSRGT 194 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHH-----------HHHHhCC--CcCHHHHHHHHHHhCCC
Confidence 999999998899999999999999981 2223344 78999999999876544
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=169.27 Aligned_cols=94 Identities=31% Similarity=0.508 Sum_probs=69.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCC-CCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p-~dl~pel~gR~ 1095 (1165)
...|+||||||++... .|+.||+.+|... +.||+++. .+| ..+.|.|++||
T Consensus 92 ~~~vL~IDEi~~l~~~-------------~q~~LL~~le~~~------------iilI~att---~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 92 RRTILFIDEIHRFNKA-------------QQDALLPHVEDGT------------ITLIGATT---ENPSFEVNPALLSRA 143 (413)
T ss_pred CceEEEEechhhhCHH-------------HHHHHHHHhhcCc------------EEEEEeCC---CChhhhccHHHhccc
Confidence 3569999999999765 7889999998632 34555432 234 36889999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
. .+.|++|+.+++.++|. ..+.+. ..|+ +.+++++++.|++.+
T Consensus 144 ~-~~~~~~ls~e~i~~lL~----~~l~~~-----~~~~-i~i~~~al~~l~~~s 186 (413)
T PRK13342 144 Q-VFELKPLSEEDIEQLLK----RALEDK-----ERGL-VELDDEALDALARLA 186 (413)
T ss_pred e-eeEeCCCCHHHHHHHHH----HHHHHh-----hcCC-CCCCHHHHHHHHHhC
Confidence 5 47999999999999988 222221 1144 478999999999876
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=161.47 Aligned_cols=124 Identities=18% Similarity=0.258 Sum_probs=90.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|++... .++.||..+|.. ..++.||.++ +++..+.|.+++|+-
T Consensus 119 ~~kviIIDEa~~l~~~-------------a~naLLk~lEe~----------~~~~~fIl~t----~~~~~l~~tI~SRc~ 171 (363)
T PRK14961 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PQHIKFILAT----TDVEKIPKTILSRCL 171 (363)
T ss_pred CceEEEEEChhhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEc----CChHhhhHHHHhhce
Confidence 4579999999999754 566899999852 3455666664 456678899999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+|+.+++.++|. ..++.+|+ .+++++++.|+..+ +++.|.+.+.++++..
T Consensus 172 -~~~~~~l~~~el~~~L~-----------~~~~~~g~--~i~~~al~~ia~~s--------~G~~R~al~~l~~~~~--- 226 (363)
T PRK14961 172 -QFKLKIISEEKIFNFLK-----------YILIKESI--DTDEYALKLIAYHA--------HGSMRDALNLLEHAIN--- 226 (363)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999998884 23444554 67899999999877 5678999999988753
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+. . -.||.+.|.+.++
T Consensus 227 ~~-~---~~It~~~v~~~l~ 242 (363)
T PRK14961 227 LG-K---GNINIKNVTDMLG 242 (363)
T ss_pred hc-C---CCCCHHHHHHHHC
Confidence 21 1 1366665555443
|
|
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.52 E-value=7e-14 Score=163.54 Aligned_cols=182 Identities=25% Similarity=0.448 Sum_probs=124.5
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
.+++|+|.+..++.+.+++..++....+..... ..+|.++||+||||||||++|+++|+.++.+|+.+.++++... |+
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g-~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~-~~ 197 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVG-IEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-YI 197 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC-CCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHH-hh
Confidence 346899999999999999876544433222111 1126899999999999999999999999999999887776554 55
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|... ..++++|..+
T Consensus 198 g~~~-~~i~~~f~~a----------------------------------------------------------------- 211 (364)
T TIGR01242 198 GEGA-RLVREIFELA----------------------------------------------------------------- 211 (364)
T ss_pred hHHH-HHHHHHHHHH-----------------------------------------------------------------
Confidence 5431 2233333222
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
....+
T Consensus 212 ---------------------------------------------------------------------------~~~~p 216 (364)
T TIGR01242 212 ---------------------------------------------------------------------------KEKAP 216 (364)
T ss_pred ---------------------------------------------------------------------------HhcCC
Confidence 00146
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
+||||||||.+.....+... . ....+|+.++.++..-. +.-...++.||++++ .|+.+.|.++ |||.
T Consensus 217 ~il~iDEiD~l~~~~~~~~~-~-~~~~~~~~l~~ll~~ld-----~~~~~~~v~vI~ttn----~~~~ld~al~r~grfd 285 (364)
T TIGR01242 217 SIIFIDEIDAIAAKRTDSGT-S-GDREVQRTLMQLLAELD-----GFDPRGNVKVIAATN----RPDILDPALLRPGRFD 285 (364)
T ss_pred cEEEhhhhhhhccccccCCC-C-ccHHHHHHHHHHHHHhh-----CCCCCCCEEEEEecC----ChhhCChhhcCcccCc
Confidence 79999999999876432111 1 12235665555543100 112345788888874 6777888887 5999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++++.++.++..+|+.
T Consensus 286 ~~i~v~~P~~~~r~~Il~ 303 (364)
T TIGR01242 286 RIIEVPLPDFEGRLEILK 303 (364)
T ss_pred eEEEeCCcCHHHHHHHHH
Confidence 999999999999999987
|
Many proteins may score above the trusted cutoff because an internal |
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=174.94 Aligned_cols=125 Identities=18% Similarity=0.238 Sum_probs=95.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|+++.. .|+.||.+||. ...|++||++. +++..+.+.+++|+.
T Consensus 120 ~~KV~IIDEad~lt~~-------------a~NaLLK~LEE----------pP~~~~fIl~t----t~~~kLl~TIrSRc~ 172 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQ-------------GFNALLKIVEE----------PPEHLKFIFAT----TEPDKVIGTIRSRTH 172 (824)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHHhC----------CCCCeEEEEEe----CChhhhhHHHHhhee
Confidence 5789999999999865 67799999996 34677888764 456668999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|.+|+.+++.++|. +.+..+|+ .++++++..|++.+ ++..|.+.+.|++++.
T Consensus 173 ~-v~F~~l~~~~l~~~L~-----------~il~~EGv--~id~eal~lLa~~s--------gGdlR~Al~eLEKLia--- 227 (824)
T PRK07764 173 H-YPFRLVPPEVMRGYLE-----------RICAQEGV--PVEPGVLPLVIRAG--------GGSVRDSLSVLDQLLA--- 227 (824)
T ss_pred E-EEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 5 6999999999998883 34555675 67899999998877 5678999999999873
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+.-. -.||.+.|...++
T Consensus 228 ~~~~---~~IT~e~V~allg 244 (824)
T PRK07764 228 GAGP---EGVTYERAVALLG 244 (824)
T ss_pred hcCC---CCCCHHHHHHHhc
Confidence 2111 1366666665554
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=165.51 Aligned_cols=124 Identities=17% Similarity=0.287 Sum_probs=96.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.++.. .++.||..+|. ...|+.||.+. +++..+.+.+++|+.
T Consensus 116 ~~KVvIIDEah~Ls~~-------------A~NaLLK~LEe----------Pp~~v~fIlat----te~~Kl~~tI~SRc~ 168 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS-------------AFNALLKTLEE----------PAPHVKFILAT----TEVKKIPVTIISRCQ 168 (491)
T ss_pred CceEEEEeChHhCCHH-------------HHHHHHHHHhC----------CCCCeEEEEEe----CChHHHHHHHHHhhe
Confidence 5789999999999764 56799999996 23567777764 456678889999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.+.+. ..++.+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 169 ~-~~f~~l~~~el~~~L~-----------~ia~~Egi--~i~~eAL~lIa~~s--------~GslR~alslLdqli~--- 223 (491)
T PRK14964 169 R-FDLQKIPTDKLVEHLV-----------DIAKKENI--EHDEESLKLIAENS--------SGSMRNALFLLEQAAI--- 223 (491)
T ss_pred e-eecccccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 6999999999988873 33455666 68899999999988 5789999999999863
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|.. + .||.+.|++.++
T Consensus 224 y~~-~---~It~e~V~~llg 239 (491)
T PRK14964 224 YSN-N---KISEKSVRDLLG 239 (491)
T ss_pred hcC-C---CCCHHHHHHHHc
Confidence 221 1 478888877655
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=169.39 Aligned_cols=105 Identities=20% Similarity=0.341 Sum_probs=76.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee---eee---------------eccCceEEEEecCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT---KYG---------------IIKTDHILFIASGA 1078 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~---k~~---------------~~~t~~ilfI~~ga 1078 (1165)
+.|++||||+|.+... .|..|++++|...+.. .|- .....++.+|++++
T Consensus 265 sgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt 331 (615)
T TIGR02903 265 HGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT 331 (615)
T ss_pred CCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc
Confidence 5799999999998776 8899999998765421 010 01123455555554
Q ss_pred CCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1079 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1079 f~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+|+.+.|.|.+||.. +.|.||+.+|+..|++. .+...++ .|++++++.|+..+.+
T Consensus 332 ---~~~~~l~~aLrSR~~~-i~~~pls~edi~~Il~~-----------~a~~~~v--~ls~eal~~L~~ys~~ 387 (615)
T TIGR02903 332 ---RDPEEINPALRSRCAE-VFFEPLTPEDIALIVLN-----------AAEKINV--HLAAGVEELIARYTIE 387 (615)
T ss_pred ---ccccccCHHHHhceeE-EEeCCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHCCCc
Confidence 3577899999999985 58999999999999992 2223354 6889999999887654
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.9e-14 Score=175.99 Aligned_cols=98 Identities=23% Similarity=0.392 Sum_probs=74.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCC-CCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p-~dl~pel~gR~ 1095 (1165)
..+|+||||||.+... .|+.||+.+|.+ ++.+|++.. .+| ..+.|.|++|+
T Consensus 109 ~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~g------------~IiLI~aTT---enp~~~l~~aL~SR~ 160 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-------------QQDALLPWVENG------------TITLIGATT---ENPYFEVNKALVSRS 160 (725)
T ss_pred CceEEEEeChhhCCHH-------------HHHHHHHHhcCc------------eEEEEEecC---CChHhhhhhHhhccc
Confidence 3569999999999865 788999999863 345666543 344 35889999998
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+ +.|++|+.+++..||+ ..+.++..-++.+++ .+++++++.|++.+
T Consensus 161 ~v-~~l~pLs~edi~~IL~----~~l~~~~~~~g~~~v--~I~deaL~~La~~s 207 (725)
T PRK13341 161 RL-FRLKSLSDEDLHQLLK----RALQDKERGYGDRKV--DLEPEAEKHLVDVA 207 (725)
T ss_pred cc-eecCCCCHHHHHHHHH----HHHHHHHhhcCCccc--CCCHHHHHHHHHhC
Confidence 75 6999999999999999 344443333444555 78999999999877
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=161.95 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=72.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|++... .|+.||+.+|... .++.||+++ +++..+.|.+++|+-
T Consensus 120 ~kviIIDEa~~l~~~-------------a~naLLk~lEe~~----------~~~~fIl~t----~~~~~l~~tI~SRc~- 171 (363)
T PRK14961 120 FKVYLIDEVHMLSRH-------------SFNALLKTLEEPP----------QHIKFILAT----TDVEKIPKTILSRCL- 171 (363)
T ss_pred ceEEEEEChhhcCHH-------------HHHHHHHHHhcCC----------CCeEEEEEc----CChHhhhHHHHhhce-
Confidence 459999999999754 6789999999632 345666654 456778899999995
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|++++.+++.++|. ..++.+|+ .+++++++.|+..+-
T Consensus 172 ~~~~~~l~~~el~~~L~-----------~~~~~~g~--~i~~~al~~ia~~s~ 211 (363)
T PRK14961 172 QFKLKIISEEKIFNFLK-----------YILIKESI--DTDEYALKLIAYHAH 211 (363)
T ss_pred EEeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999998888 44556676 678999999998764
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-13 Score=169.03 Aligned_cols=125 Identities=16% Similarity=0.289 Sum_probs=94.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|++... .++.||..||.. ..++.||+++ +.+..+.+.++|||-
T Consensus 119 k~KVIIIDEad~Ls~~-------------A~NALLKtLEEP----------p~~v~fILaT----td~~kL~~TIrSRC~ 171 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPHKVPVTVLSRCL 171 (709)
T ss_pred CcEEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCcEEEEEe----CCccccchHHHHHHh
Confidence 5689999999998654 566899999852 3456677664 467788899999994
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|++++.+++...|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 -~f~f~~Ls~eeI~~~L~-----------~Il~kEgi--~id~eAL~~Ia~~A--------~GslRdAlnLLDqaia--- 226 (709)
T PRK08691 172 -QFVLRNMTAQQVADHLA-----------HVLDSEKI--AYEPPALQLLGRAA--------AGSMRDALSLLDQAIA--- 226 (709)
T ss_pred -hhhcCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHHh--------CCCHHHHHHHHHHHHH---
Confidence 46899999999988883 34566675 67999999999988 5789999999999864
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
|. . -.|+.+.|...++.
T Consensus 227 ~g--~--g~It~e~V~~lLG~ 243 (709)
T PRK08691 227 LG--S--GKVAENDVRQMIGA 243 (709)
T ss_pred hc--C--CCcCHHHHHHHHcc
Confidence 21 1 13666666665553
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=167.26 Aligned_cols=125 Identities=20% Similarity=0.307 Sum_probs=96.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.+++. .|+.||..+|. ...|++||+++ ++|..+.|.+++|+.
T Consensus 118 ~~KVvIIDEah~Lt~~-------------A~NALLK~LEE----------pp~~~~fIL~t----te~~kll~TI~SRc~ 170 (584)
T PRK14952 118 RYRIFIVDEAHMVTTA-------------GFNALLKIVEE----------PPEHLIFIFAT----TEPEKVLPTIRSRTH 170 (584)
T ss_pred CceEEEEECCCcCCHH-------------HHHHHHHHHhc----------CCCCeEEEEEe----CChHhhHHHHHHhce
Confidence 5789999999999765 67799999996 34577888764 466789999999975
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+++.+++.+.|. ..+..+|+ .++++++..|++.+ +++.|.+.+.+++++.
T Consensus 171 -~~~F~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~Ia~~s--------~GdlR~aln~Ldql~~--- 225 (584)
T PRK14952 171 -HYPFRLLPPRTMRALIA-----------RICEQEGV--VVDDAVYPLVIRAG--------GGSPRDTLSVLDQLLA--- 225 (584)
T ss_pred -EEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 57999999999888773 34455665 67899999998877 6779999999999863
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|... -.||.+.|.+.++
T Consensus 226 ~~~~---~~It~~~v~~llg 242 (584)
T PRK14952 226 GAAD---THVTYQRALGLLG 242 (584)
T ss_pred ccCC---CCcCHHHHHHHHC
Confidence 3211 2367666666554
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=167.43 Aligned_cols=125 Identities=17% Similarity=0.268 Sum_probs=95.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.++.. .++.||..+|. ...|+.||.++ +.|..+.+.+++|+-
T Consensus 124 ~~KV~IIDEvh~Ls~~-------------a~NaLLKtLEE----------PP~~~~fIL~T----td~~kil~TIlSRc~ 176 (618)
T PRK14951 124 RFKVFMIDEVHMLTNT-------------AFNAMLKTLEE----------PPEYLKFVLAT----TDPQKVPVTVLSRCL 176 (618)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHhccc----------CCCCeEEEEEE----CCchhhhHHHHHhce
Confidence 4779999999999866 45689999985 24577777663 467788889999985
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|++|+.+++.+.|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 177 -~~~f~~Ls~eei~~~L~-----------~i~~~egi--~ie~~AL~~La~~s--------~GslR~al~lLdq~ia--- 231 (618)
T PRK14951 177 -QFNLRPMAPETVLEHLT-----------QVLAAENV--PAEPQALRLLARAA--------RGSMRDALSLTDQAIA--- 231 (618)
T ss_pred -eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999988883 33455666 67899999999977 5788999998887753
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
|. . -.||.+.|++.++.
T Consensus 232 ~~--~--~~It~~~V~~~Lg~ 248 (618)
T PRK14951 232 FG--S--GQLQEAAVRQMLGS 248 (618)
T ss_pred hc--C--CCcCHHHHHHHHcC
Confidence 21 1 24777777776653
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-13 Score=157.77 Aligned_cols=105 Identities=21% Similarity=0.322 Sum_probs=78.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|.++.. .|+.|+..+|-.. .+..||.++ +.++.+.|.|++|+.
T Consensus 99 ~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~----------~~t~~il~~----n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 99 RHKIVILDEADSMTSG-------------AQQALRRTMEIYS----------NTTRFALAC----NTSSKIIEPIQSRCA 151 (319)
T ss_pred CeEEEEEechhhcCHH-------------HHHHHHHHHhccc----------CCceEEEEe----CCccccchhHHHhhh
Confidence 3679999999999765 5678999888421 112233332 356678999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEK 572 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~ 572 (1165)
.+.|++|+.+++..+|. ..++.+|+ .+++++++.|++.+ +++.|.+.+.++.
T Consensus 152 -~i~f~~l~~~~l~~~L~-----------~i~~~egi--~i~~~~l~~i~~~~--------~gDlR~aln~Lq~ 203 (319)
T PLN03025 152 -IVRFSRLSDQEILGRLM-----------KVVEAEKV--PYVPEGLEAIIFTA--------DGDMRQALNNLQA 203 (319)
T ss_pred -cccCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHH
Confidence 47999999999988883 33455676 57899999999877 5788988888873
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=167.49 Aligned_cols=93 Identities=18% Similarity=0.270 Sum_probs=75.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .|+.||+.+|... +++.||++. +++..+.+.+++||-
T Consensus 119 ~~kViIIDEa~~ls~~-------------a~naLLK~LEepp----------~~v~fIL~T----td~~kil~tI~SRc~ 171 (546)
T PRK14957 119 RYKVYLIDEVHMLSKQ-------------SFNALLKTLEEPP----------EYVKFILAT----TDYHKIPVTILSRCI 171 (546)
T ss_pred CcEEEEEechhhccHH-------------HHHHHHHHHhcCC----------CCceEEEEE----CChhhhhhhHHHhee
Confidence 4569999999999765 8899999999632 455666654 457788889999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++|+.+++.+.|. ..++.+|+ .++++|++.|++.|-
T Consensus 172 ~-~~f~~Ls~~eI~~~L~-----------~il~~egi--~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 172 Q-LHLKHISQADIKDQLK-----------IILAKENI--NSDEQSLEYIAYHAK 211 (546)
T ss_pred e-EEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 7999999999998888 45566786 788999999998774
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-13 Score=166.64 Aligned_cols=93 Identities=18% Similarity=0.318 Sum_probs=75.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .|+.||..+|.. ..|+.||+++ +.+..+.+.+++|+-
T Consensus 128 ~~KVvIIDEa~~Ls~~-------------a~naLLk~LEep----------p~~~vfI~aT----te~~kI~~tI~SRc~ 180 (507)
T PRK06645 128 KHKIFIIDEVHMLSKG-------------AFNALLKTLEEP----------PPHIIFIFAT----TEVQKIPATIISRCQ 180 (507)
T ss_pred CcEEEEEEChhhcCHH-------------HHHHHHHHHhhc----------CCCEEEEEEe----CChHHhhHHHHhcce
Confidence 4569999999999754 788999999952 3567777765 466778899999995
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|++++.+++.++|+ ..++.+|+ .++++|++.|++.+.
T Consensus 181 -~~ef~~ls~~el~~~L~-----------~i~~~egi--~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 181 -RYDLRRLSFEEIFKLLE-----------YITKQENL--KTDIEALRIIAYKSE 220 (507)
T ss_pred -EEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 67999999999999988 55667787 678999999998654
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.7e-14 Score=170.03 Aligned_cols=92 Identities=17% Similarity=0.282 Sum_probs=75.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++|||+|.+... .|+.||+.+|.. ..|+.||++. ++|+.+.+.+++||-
T Consensus 125 ~KV~IIDEvh~Ls~~-------------a~NaLLKtLEEP----------P~~~~fIL~T----td~~kil~TIlSRc~- 176 (618)
T PRK14951 125 FKVFMIDEVHMLTNT-------------AFNAMLKTLEEP----------PEYLKFVLAT----TDPQKVPVTVLSRCL- 176 (618)
T ss_pred ceEEEEEChhhCCHH-------------HHHHHHHhcccC----------CCCeEEEEEE----CCchhhhHHHHHhce-
Confidence 469999999999876 678999999963 3566677654 468889999999995
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|++|+.+++.+.|. ..++.+|+ .+++++++.|++.+-
T Consensus 177 ~~~f~~Ls~eei~~~L~-----------~i~~~egi--~ie~~AL~~La~~s~ 216 (618)
T PRK14951 177 QFNLRPMAPETVLEHLT-----------QVLAAENV--PAEPQALRLLARAAR 216 (618)
T ss_pred eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999988888 55667787 678999999998654
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=165.69 Aligned_cols=93 Identities=16% Similarity=0.296 Sum_probs=76.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||+.+|... .|+.||++. +++..+.+.+++||-
T Consensus 116 ~~KVvIIDEah~Ls~~-------------A~NaLLK~LEePp----------~~v~fIlat----te~~Kl~~tI~SRc~ 168 (491)
T PRK14964 116 KFKVYIIDEVHMLSNS-------------AFNALLKTLEEPA----------PHVKFILAT----TEVKKIPVTIISRCQ 168 (491)
T ss_pred CceEEEEeChHhCCHH-------------HHHHHHHHHhCCC----------CCeEEEEEe----CChHHHHHHHHHhhe
Confidence 4569999999999765 7889999999632 466677664 467778899999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ++|++++.+++.+.|. ..++.+|+ .++++|++.|++.+-
T Consensus 169 ~-~~f~~l~~~el~~~L~-----------~ia~~Egi--~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 169 R-FDLQKIPTDKLVEHLV-----------DIAKKENI--EHDEESLKLIAENSS 208 (491)
T ss_pred e-eecccccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 6999999999998888 55667787 788999999998774
|
|
| >KOG0651|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.4e-14 Score=155.71 Aligned_cols=182 Identities=26% Similarity=0.377 Sum_probs=140.1
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
+++.|.-..+..+.+.+..++..+.++.+.... +|..++||||||+|||.+|+++|..++.+|+.+.++++.+ +|.|+
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk-~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~-kyiGE 209 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIK-PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD-KYIGE 209 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCC-CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh-hhccc
Confidence 477888888999999888777777666654332 4689999999999999999999999999999999999988 59999
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ ..++++.|+.+
T Consensus 210 s-aRlIRemf~yA------------------------------------------------------------------- 221 (388)
T KOG0651|consen 210 S-ARLIRDMFRYA------------------------------------------------------------------- 221 (388)
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 67777777663
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.++ .+||
T Consensus 222 -----------------------------------------------------------------------~~~--~pci 228 (388)
T KOG0651|consen 222 -----------------------------------------------------------------------REV--IPCI 228 (388)
T ss_pred -----------------------------------------------------------------------hhh--CceE
Confidence 011 4699
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
||+||||.+..+..+ ...++..-||+.|..++++-. |.=....+=.|+|| ++|+.|.|+|+ ||++..
T Consensus 229 ifmdeiDAigGRr~s--e~Ts~dreiqrTLMeLlnqmd-----gfd~l~rVk~Imat----NrpdtLdpaLlRpGRldrk 297 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFS--EGTSSDREIQRTLMELLNQMD-----GFDTLHRVKTIMAT----NRPDTLDPALLRPGRLDRK 297 (388)
T ss_pred EeehhhhhhccEEec--cccchhHHHHHHHHHHHHhhc-----cchhcccccEEEec----CCccccchhhcCCccccce
Confidence 999999999987643 233445569999888776311 11112234467886 68999999998 899999
Q ss_pred EecCCCCHHHHHHHHhhh
Q psy2392 501 VELDSLSISDFTRIMTST 518 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~ 518 (1165)
++.+-+++.....|++.+
T Consensus 298 ~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 298 VEIPLPNEQARLGILKIH 315 (388)
T ss_pred eccCCcchhhceeeEeec
Confidence 999988888777777644
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-13 Score=169.32 Aligned_cols=93 Identities=17% Similarity=0.317 Sum_probs=75.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .++.||..||.. -+|+.||++. ++|..+.+.+++||-
T Consensus 119 k~KVIIIDEad~Ls~~-------------A~NALLKtLEEP----------p~~v~fILaT----td~~kL~~TIrSRC~ 171 (709)
T PRK08691 119 KYKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPHKVPVTVLSRCL 171 (709)
T ss_pred CcEEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCcEEEEEe----CCccccchHHHHHHh
Confidence 3469999999998654 678999999952 2455666664 468889999999994
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|++++.+++.+.|. .++..+|+ .+++++++.|++.|-
T Consensus 172 -~f~f~~Ls~eeI~~~L~-----------~Il~kEgi--~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 172 -QFVLRNMTAQQVADHLA-----------HVLDSEKI--AYEPPALQLLGRAAA 211 (709)
T ss_pred -hhhcCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHHhC
Confidence 46899999999998888 56777887 689999999999875
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-13 Score=166.03 Aligned_cols=139 Identities=16% Similarity=0.202 Sum_probs=98.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee---ceee---------------cCceEEEEEeCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK---YGII---------------KTDHILFIASGA 480 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~---~~~~---------------~t~~ilfI~~ga 480 (1165)
.+|++||||||++.+. .|+.||..+|...+... |... -+.++.+|+++
T Consensus 175 ~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~AT- 240 (531)
T TIGR02902 175 HGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGAT- 240 (531)
T ss_pred CCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEe-
Confidence 5899999999999877 67799999986554321 1000 12234456553
Q ss_pred cccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCc
Q psy2392 481 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 560 (1165)
Q Consensus 481 f~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~ 560 (1165)
+..|+.+.|+|++|+.. +.|.+|+.+++.+|++ . .+...+ +.+++++++.|+.++.
T Consensus 241 --t~~p~~L~paLrsR~~~-I~f~pL~~eei~~Il~----~-------~a~k~~--i~is~~al~~I~~y~~-------- 296 (531)
T TIGR02902 241 --TRNPEEIPPALRSRCVE-IFFRPLLDEEIKEIAK----N-------AAEKIG--INLEKHALELIVKYAS-------- 296 (531)
T ss_pred --cCCcccCChHHhhhhhe-eeCCCCCHHHHHHHHH----H-------HHHHcC--CCcCHHHHHHHHHhhh--------
Confidence 35788999999999864 6899999999999984 1 222334 5789999999887652
Q ss_pred cCcchhHHHHHHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 561 IGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 561 ~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
..|.+.++++.+..-...+ ....|+.+.+.+.++.
T Consensus 297 -n~Rel~nll~~Aa~~A~~~---~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 297 -NGREAVNIVQLAAGIALGE---GRKRILAEDIEWVAEN 331 (531)
T ss_pred -hHHHHHHHHHHHHHHHhhC---CCcEEcHHHHHHHhCC
Confidence 3599999998876433221 2256888888888764
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.7e-14 Score=179.59 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=59.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--cc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GR 1094 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR 1094 (1165)
+++||||||||.|+...+ +.-.-..||..|.|.. +...+.+|++|||+. .|..+.|+|+ ||
T Consensus 1732 SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~-----~~~s~~~VIVIAATN----RPD~LDPALLRPGR 1794 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDC-----ERCSTRNILVIASTH----IPQKVDPALIAPNK 1794 (2281)
T ss_pred CCeEEEEEchhhcCCCcc--------ceehHHHHHHHhcccc-----ccCCCCCEEEEEeCC----CcccCCHhHcCCCC
Confidence 689999999999987622 1111235666666521 123577899999974 8999999999 59
Q ss_pred CCeEEEcCCCCHHHHHHHHh
Q psy2392 1095 FPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|+-.|.+..++..+-.+++.
T Consensus 1795 FDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1795 LNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred CCeEEEeCCCCchhHHHHHH
Confidence 99999998888766666654
|
|
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=151.57 Aligned_cols=106 Identities=27% Similarity=0.338 Sum_probs=83.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.|++|||.|.++.. .|.+|+..||....+| .||.- .+.++.+++.+.+|+.
T Consensus 129 ~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~s~~t----------rFiLI----cnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 129 PFKIIILDECDSMTSD-------------AQAALRRTMEDFSRTT----------RFILI----CNYLSRIIRPLVSRCQ 181 (346)
T ss_pred cceEEEEechhhhhHH-------------HHHHHHHHHhccccce----------EEEEE----cCChhhCChHHHhhHH
Confidence 5689999999999876 6779999999754333 33332 2357789999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
-+ .|++|..++....|. .+...||+ .+++++++.|++.+ .++-|+.-+.++++
T Consensus 182 Kf-rFk~L~d~~iv~rL~-----------~Ia~~E~v--~~d~~al~~I~~~S--------~GdLR~Ait~Lqsl 234 (346)
T KOG0989|consen 182 KF-RFKKLKDEDIVDRLE-----------KIASKEGV--DIDDDALKLIAKIS--------DGDLRRAITTLQSL 234 (346)
T ss_pred Hh-cCCCcchHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHh
Confidence 75 899999999888884 33456777 78899999999988 56788888888776
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=172.82 Aligned_cols=93 Identities=18% Similarity=0.266 Sum_probs=75.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+.|+||||+|+|+.. .|+.||++||.. ..|++||+.. +++..|++.|++||-
T Consensus 120 ~~KV~IIDEad~lt~~-------------a~NaLLK~LEEp----------P~~~~fIl~t----t~~~kLl~TIrSRc~ 172 (824)
T PRK07764 120 RYKIFIIDEAHMVTPQ-------------GFNALLKIVEEP----------PEHLKFIFAT----TEPDKVIGTIRSRTH 172 (824)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHHhCC----------CCCeEEEEEe----CChhhhhHHHHhhee
Confidence 4569999999999875 788999999962 3567787764 466679999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|.+|+.+++.++|. .+++.+|+ .++++++..|++.+-
T Consensus 173 ~-v~F~~l~~~~l~~~L~-----------~il~~EGv--~id~eal~lLa~~sg 212 (824)
T PRK07764 173 H-YPFRLVPPEVMRGYLE-----------RICAQEGV--PVEPGVLPLVIRAGG 212 (824)
T ss_pred E-EEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 6 5999999999998888 56677787 578999988887764
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=163.23 Aligned_cols=124 Identities=18% Similarity=0.280 Sum_probs=92.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .|+.||+.+|.. ..+++||++. +++..+.+.|++|+.
T Consensus 119 ~~kVIIIDEad~Lt~~-------------a~naLLk~LEEP----------~~~~ifILaT----t~~~kll~TI~SRcq 171 (624)
T PRK14959 119 RYKVFIIDEAHMLTRE-------------AFNALLKTLEEP----------PARVTFVLAT----TEPHKFPVTIVSRCQ 171 (624)
T ss_pred CceEEEEEChHhCCHH-------------HHHHHHHHhhcc----------CCCEEEEEec----CChhhhhHHHHhhhh
Confidence 5679999999999755 567999999852 2456666653 467778889999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|++|+.+++.++|. ..+..+|+ .+++++++.|++.+ ++++|.+.+.+++++..
T Consensus 172 ~-i~F~pLs~~eL~~~L~-----------~il~~egi--~id~eal~lIA~~s--------~GdlR~Al~lLeqll~~-- 227 (624)
T PRK14959 172 H-FTFTRLSEAGLEAHLT-----------KVLGREGV--DYDPAAVRLIARRA--------AGSVRDSMSLLGQVLAL-- 227 (624)
T ss_pred c-cccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHh--
Confidence 5 6999999999999884 23445554 68999999999977 56799999999987521
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
.+ -.||.+.|++.++
T Consensus 228 ---g~--~~It~d~V~~~lg 242 (624)
T PRK14959 228 ---GE--SRLTIDGARGVLG 242 (624)
T ss_pred ---cC--CCcCHHHHHHHhC
Confidence 11 1477777766554
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=166.01 Aligned_cols=104 Identities=19% Similarity=0.332 Sum_probs=77.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee---eeec---------------cCceEEEEecCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK---YGII---------------KTDHILFIASGA 1078 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k---~~~~---------------~t~~ilfI~~ga 1078 (1165)
+.|++||||||.+... +|+.||..+|...+... |... .+.++.+|++++
T Consensus 175 ~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt 241 (531)
T TIGR02902 175 HGGVLFIDEIGELHPV-------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATT 241 (531)
T ss_pred CCcEEEEechhhCCHH-------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEec
Confidence 6799999999999876 89999999987544321 1111 123345666655
Q ss_pred CCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1079 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1079 f~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
..|+.+.|+|++||.. +.|++|+.+|+.+|++ ..++..|+ .+++++++.|+..+.
T Consensus 242 ---~~p~~L~paLrsR~~~-I~f~pL~~eei~~Il~-----------~~a~k~~i--~is~~al~~I~~y~~ 296 (531)
T TIGR02902 242 ---RNPEEIPPALRSRCVE-IFFRPLLDEEIKEIAK-----------NAAEKIGI--NLEKHALELIVKYAS 296 (531)
T ss_pred ---CCcccCChHHhhhhhe-eeCCCCCHHHHHHHHH-----------HHHHHcCC--CcCHHHHHHHHHhhh
Confidence 6789999999999865 6899999999999998 23333454 789999998887654
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.7e-13 Score=163.87 Aligned_cols=124 Identities=19% Similarity=0.299 Sum_probs=93.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|+++.. .++.||..+|.. ..++.||+++ ++|..+.+.+++|+-
T Consensus 119 ~~kVvIIDEad~ls~~-------------a~naLLK~LEep----------p~~~~fIL~t----~d~~kil~tI~SRc~ 171 (527)
T PRK14969 119 RFKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPQKIPVTVLSRCL 171 (527)
T ss_pred CceEEEEcCcccCCHH-------------HHHHHHHHHhCC----------CCCEEEEEEe----CChhhCchhHHHHHH
Confidence 5679999999999764 566999999862 3566777764 567788888999985
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.+.|. ..++.+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 ~-~~f~~l~~~~i~~~L~-----------~il~~egi--~~~~~al~~la~~s--------~Gslr~al~lldqai~--- 226 (527)
T PRK14969 172 Q-FNLKQMPPPLIVSHLQ-----------HILEQENI--PFDATALQLLARAA--------AGSMRDALSLLDQAIA--- 226 (527)
T ss_pred H-HhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 4 6999999999888773 33455675 68999999999877 5678999999998864
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. . -.|+.+.|++.++
T Consensus 227 ~~--~--~~I~~~~v~~~~~ 242 (527)
T PRK14969 227 YG--G--GTVNESEVRAMLG 242 (527)
T ss_pred hc--C--CCcCHHHHHHHHC
Confidence 21 1 2366666666544
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.8e-13 Score=165.49 Aligned_cols=94 Identities=20% Similarity=0.326 Sum_probs=76.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .|+.||+.+|. ...|+.||++. ++|+.++|.+++|+-
T Consensus 118 ~~KVvIIDEah~Lt~~-------------A~NALLK~LEE----------pp~~~~fIL~t----te~~kll~TI~SRc~ 170 (584)
T PRK14952 118 RYRIFIVDEAHMVTTA-------------GFNALLKIVEE----------PPEHLIFIFAT----TEPEKVLPTIRSRTH 170 (584)
T ss_pred CceEEEEECCCcCCHH-------------HHHHHHHHHhc----------CCCCeEEEEEe----CChHhhHHHHHHhce
Confidence 4569999999999765 78999999995 23567788765 467899999999976
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+++|.+++.+++.+.|. .+++.+|+ .++++++..|++.+-.
T Consensus 171 -~~~F~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~Ia~~s~G 211 (584)
T PRK14952 171 -HYPFRLLPPRTMRALIA-----------RICEQEGV--VVDDAVYPLVIRAGGG 211 (584)
T ss_pred -EEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 57999999999988887 56677787 6789999999886653
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.6e-13 Score=164.04 Aligned_cols=124 Identities=21% Similarity=0.367 Sum_probs=95.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|+++.. .++.||+.||. ..+|++||+++ ++|..+.+.+++|+.
T Consensus 119 ~~KVvIIdev~~Lt~~-------------a~naLLk~LEe----------pp~~~~fIl~t----~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 119 RYKIFIIDEVHMLSTN-------------AFNALLKTLEE----------PPPHVKFIFAT----TEPHKVPITILSRCQ 171 (576)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHHHHc----------CCCCeEEEEEe----CChhhhhHHHHHhhh
Confidence 5789999999999865 56799999996 24577787764 567889999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+|.|++++.+++.+.|. ..++.+|+ .++++++..|++.+ +++.|.+.+.+++++.
T Consensus 172 -~~~f~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~la~~a--------~G~lr~al~~Ldqlia--- 226 (576)
T PRK14965 172 -RFDFRRIPLQKIVDRLR-----------YIADQEGI--SISDAALALVARKG--------DGSMRDSLSTLDQVLA--- 226 (576)
T ss_pred -hhhcCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 46999999999888773 33455665 67899999999988 5788999999998864
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|.. + .||.+.|...++
T Consensus 227 y~g-~---~It~edV~~llG 242 (576)
T PRK14965 227 FCG-D---AVGDDDVAELLG 242 (576)
T ss_pred hcc-C---CCCHHHHHHHhC
Confidence 221 1 266666665544
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.2e-13 Score=161.50 Aligned_cols=124 Identities=21% Similarity=0.395 Sum_probs=95.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+||||+|.++.. .++.||..+|.. ..|++||.++ +.|..+.|.+++|+.
T Consensus 119 ~~kViIIDE~~~Lt~~-------------a~naLLKtLEep----------p~~~ifIlat----t~~~ki~~tI~SRc~ 171 (559)
T PRK05563 119 KYKVYIIDEVHMLSTG-------------AFNALLKTLEEP----------PAHVIFILAT----TEPHKIPATILSRCQ 171 (559)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChhhCcHHHHhHhe
Confidence 5789999999999754 566999999862 4577788764 467889999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|.+++.+++.++|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 ~-~~f~~~~~~ei~~~L~-----------~i~~~egi--~i~~~al~~ia~~s--------~G~~R~al~~Ldq~~~--- 226 (559)
T PRK05563 172 R-FDFKRISVEDIVERLK-----------YILDKEGI--EYEDEALRLIARAA--------EGGMRDALSILDQAIS--- 226 (559)
T ss_pred E-EecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 6999999999988883 33445666 67899999999877 5789999999998864
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. . -.||.+.|.+.++
T Consensus 227 ~~-~---~~It~~~V~~vlg 242 (559)
T PRK05563 227 FG-D---GKVTYEDALEVTG 242 (559)
T ss_pred hc-c---CCCCHHHHHHHhC
Confidence 32 1 1377777766554
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-13 Score=164.66 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=75.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .|+.||+.+|.. .+++.||+++ ++|..+.+.+++||-
T Consensus 119 ~~kVvIIDEad~ls~~-------------a~naLLK~LEep----------p~~~~fIL~t----~d~~kil~tI~SRc~ 171 (527)
T PRK14969 119 RFKVYIIDEVHMLSKS-------------AFNAMLKTLEEP----------PEHVKFILAT----TDPQKIPVTVLSRCL 171 (527)
T ss_pred CceEEEEcCcccCCHH-------------HHHHHHHHHhCC----------CCCEEEEEEe----CChhhCchhHHHHHH
Confidence 3569999999999765 688999999963 2456677764 578888889999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++.+.|. ..++.+|+ .++++|++.|++.+-
T Consensus 172 ~-~~f~~l~~~~i~~~L~-----------~il~~egi--~~~~~al~~la~~s~ 211 (527)
T PRK14969 172 Q-FNLKQMPPPLIVSHLQ-----------HILEQENI--PFDATALQLLARAAA 211 (527)
T ss_pred H-HhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 6999999999988887 55667786 688999999998764
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=161.50 Aligned_cols=124 Identities=18% Similarity=0.322 Sum_probs=95.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.+++. .++.||..+|. ...+++||+++ ++|..+.|.+++|+.
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLEE----------PP~~tifILaT----te~~KLl~TI~SRcq 170 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLEE----------PPKHVIFILAT----TEVHKIPLTILSRVQ 170 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhhc----------CCCceEEEEEc----CChhhhhHHHHhhce
Confidence 5789999999999754 67799999996 24567787764 467889999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+|+.+++.++|. ..+..+|+ .+++++++.|+..+ +++.|.+.+.++++..
T Consensus 171 -~ieF~~L~~eeI~~~L~-----------~il~kegI--~id~eAl~~LA~lS--------~GslR~AlslLekl~~--- 225 (725)
T PRK07133 171 -RFNFRRISEDEIVSRLE-----------FILEKENI--SYEKNALKLIAKLS--------SGSLRDALSIAEQVSI--- 225 (725)
T ss_pred -eEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 67999999999998884 23445564 67899999999887 5778999999998742
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. .. .||.+.|++.++
T Consensus 226 y~--~~--~It~e~V~ellg 241 (725)
T PRK07133 226 FG--NN--KITLKNVEELFG 241 (725)
T ss_pred hc--cC--CCCHHHHHHHHc
Confidence 32 11 267776766554
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.1e-13 Score=162.77 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=74.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .|+.||+.+|.. ..++.||++. ++|..+.+.|++||-
T Consensus 119 ~~kVIIIDEad~Lt~~-------------a~naLLk~LEEP----------~~~~ifILaT----t~~~kll~TI~SRcq 171 (624)
T PRK14959 119 RYKVFIIDEAHMLTRE-------------AFNALLKTLEEP----------PARVTFVLAT----TEPHKFPVTIVSRCQ 171 (624)
T ss_pred CceEEEEEChHhCCHH-------------HHHHHHHHhhcc----------CCCEEEEEec----CChhhhhHHHHhhhh
Confidence 3569999999999765 788999999852 2356666653 367788889999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+ ++|++|+.+++.++|. ..+..+|+ .+++++++.|++.+..
T Consensus 172 ~-i~F~pLs~~eL~~~L~-----------~il~~egi--~id~eal~lIA~~s~G 212 (624)
T PRK14959 172 H-FTFTRLSEAGLEAHLT-----------KVLGREGV--DYDPAAVRLIARRAAG 212 (624)
T ss_pred c-cccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 5 6999999999999988 34566676 6789999999987753
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-12 Score=157.81 Aligned_cols=123 Identities=24% Similarity=0.383 Sum_probs=92.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|.+... .++.||..+|.. ..+++||.++ ++|..+.|.+.+|+.
T Consensus 116 ~~kVVIIDEad~ls~~-------------a~naLLk~LEep----------~~~t~~Il~t----~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 116 GRKVYILDEAHMMSKS-------------AFNALLKTLEEP----------PEHVIFILAT----TEPEKMPPTILSRTQ 168 (504)
T ss_pred CCeEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCEEEEEEc----CChhhCChHHhcceE
Confidence 5679999999988643 566899988852 3455666553 467789999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+|+.+++.+.|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 169 -~~~f~~ls~~el~~~L~-----------~i~~~egi--~i~~~Al~~ia~~s--------~GdlR~aln~Lekl~~--- 223 (504)
T PRK14963 169 -HFRFRRLTEEEIAGKLR-----------RLLEAEGR--EAEPEALQLVARLA--------DGAMRDAESLLERLLA--- 223 (504)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 47999999999998883 33455676 56899999999988 6789999999999864
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+ . -.||.+.|.+.++
T Consensus 224 ~--~---~~It~~~V~~~l~ 238 (504)
T PRK14963 224 L--G---TPVTRKQVEEALG 238 (504)
T ss_pred c--C---CCCCHHHHHHHHC
Confidence 2 1 1377777666544
|
|
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-14 Score=160.50 Aligned_cols=149 Identities=29% Similarity=0.418 Sum_probs=114.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC-CeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA-PFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 894 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~-~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~ 894 (1165)
.+++|||||||||||.+||.+.+.++. +--.++++++.++ |||+++ ..+|+||..|....
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~K-YVGeSE-~NvR~LFaDAEeE~----------------- 316 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNK-YVGESE-ENVRKLFADAEEEQ----------------- 316 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHH-hhcccH-HHHHHHHHhHHHHH-----------------
Confidence 589999999999999999999999963 3456899999999 999995 45999997761110
Q ss_pred HHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhh
Q psy2392 895 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 974 (1165)
Q Consensus 895 ~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1165)
T Consensus 317 -------------------------------------------------------------------------------- 316 (744)
T KOG0741|consen 317 -------------------------------------------------------------------------------- 316 (744)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC--CeeeehhhhhhhccCCCCCC-CCccchhhhhhcc
Q psy2392 975 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN--GIIFLDEIDKITTRSSQNNN-TDISRAGVQRDLL 1051 (1165)
Q Consensus 975 ~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--gIvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL 1051 (1165)
+...++. -||++||||.||+.+.+..| +.+.. -|-+.||
T Consensus 317 -------------------------------------r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD-~VVNQLL 358 (744)
T KOG0741|consen 317 -------------------------------------RRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHD-TVVNQLL 358 (744)
T ss_pred -------------------------------------HhhCccCCceEEEehhhHHHHHhcCCCCCCCCccH-HHHHHHH
Confidence 0011122 38999999999999766444 44433 3667788
Q ss_pred ccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh---ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1052 PLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ---GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1052 ~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~---gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
.=|+| +-.-+|||.|+.+ +.-||+.|-+ |||.+-+++.-+++.-..|||+
T Consensus 359 sKmDG--------VeqLNNILVIGMT-----NR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~ 411 (744)
T KOG0741|consen 359 SKMDG--------VEQLNNILVIGMT-----NRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILK 411 (744)
T ss_pred Hhccc--------HHhhhcEEEEecc-----CchhhHHHHhcCCCceEEEEEEeCCCccCceEEEE
Confidence 87884 5566899999985 3557775544 8999999999999999988887
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-13 Score=134.64 Aligned_cols=72 Identities=28% Similarity=0.517 Sum_probs=53.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh-ccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-GRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~-gR~~ 1096 (1165)
++|+||||+|++.... . .........+++.|+..++...-. ..++++|+++. .++.+.|.|+ +||.
T Consensus 59 ~~vl~iDe~d~l~~~~-~-~~~~~~~~~~~~~L~~~l~~~~~~-------~~~~~vI~ttn----~~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS-Q-PSSSSFEQRLLNQLLSLLDNPSSK-------NSRVIVIATTN----SPDKIDPALLRSRFD 125 (132)
T ss_dssp SEEEEEETGGGTSHHC-S-TSSSHHHHHHHHHHHHHHHTTTTT-------SSSEEEEEEES----SGGGSCHHHHSTTSE
T ss_pred ceeeeeccchhccccc-c-cccccccccccceeeecccccccc-------cccceeEEeeC----ChhhCCHhHHhCCCc
Confidence 6899999999999986 2 122333445777888888864322 35688988875 5888999999 9999
Q ss_pred eEEEcC
Q psy2392 1097 IRVELD 1102 (1165)
Q Consensus 1097 i~v~l~ 1102 (1165)
.+++++
T Consensus 126 ~~i~~~ 131 (132)
T PF00004_consen 126 RRIEFP 131 (132)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 998875
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=163.08 Aligned_cols=177 Identities=29% Similarity=0.453 Sum_probs=126.3
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~ 263 (1165)
++.|.+.+++.+.+.+... +.......... ..|.+++|+||||||||++|+++|+.++.+|+.++++++.+. |+|..
T Consensus 153 di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~-~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~-~~g~~ 229 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYL-REPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVG 229 (644)
T ss_pred HHcCHHHHHHHHHHHHHHh-hCHHHHHhcCC-CCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh-hhccc
Confidence 6778888888887766531 11111111111 124689999999999999999999999999999999887653 55554
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEE
Q psy2392 264 VDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEI 343 (1165)
Q Consensus 264 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i 343 (1165)
...++++|..+
T Consensus 230 -~~~~~~~f~~a-------------------------------------------------------------------- 240 (644)
T PRK10733 230 -ASRVRDMFEQA-------------------------------------------------------------------- 240 (644)
T ss_pred -HHHHHHHHHHH--------------------------------------------------------------------
Confidence 22233333321
Q ss_pred EEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEE
Q psy2392 344 EIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGII 423 (1165)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~Ii 423 (1165)
.. ..++||
T Consensus 241 ----------------------------------------------------------------------~~--~~P~Ii 248 (644)
T PRK10733 241 ----------------------------------------------------------------------KK--AAPCII 248 (644)
T ss_pred ----------------------------------------------------------------------Hh--cCCcEE
Confidence 00 147899
Q ss_pred EEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCee
Q psy2392 424 FLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIR 500 (1165)
Q Consensus 424 fiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~ 500 (1165)
||||||.+...+..+. +....++.+.+.||..+||-. ..+.++||+++ +.|..+.|+|+ |||+..
T Consensus 249 fIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~--------~~~~vivIaaT----N~p~~lD~Al~RpgRfdr~ 316 (644)
T PRK10733 249 FIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPGRFDRQ 316 (644)
T ss_pred EehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhccc--------CCCCeeEEEec----CChhhcCHHHhCCcccceE
Confidence 9999999998765422 233344556677888888732 34568888884 57899999998 699999
Q ss_pred EecCCCCHHHHHHHHh
Q psy2392 501 VELDSLSISDFTRIMT 516 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~ 516 (1165)
|.+..++.+++.+|++
T Consensus 317 i~v~~Pd~~~R~~Il~ 332 (644)
T PRK10733 317 VVVGLPDVRGREQILK 332 (644)
T ss_pred EEcCCCCHHHHHHHHH
Confidence 9999999999999984
|
|
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-13 Score=144.29 Aligned_cols=99 Identities=24% Similarity=0.353 Sum_probs=78.9
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||++||.|.++. |.|++|...||=.+-+|+| ++.++....++.++|+||.+
T Consensus 114 hKIiILDEADSMT~-------------gAQQAlRRtMEiyS~ttRF--------------alaCN~s~KIiEPIQSRCAi 166 (333)
T KOG0991|consen 114 HKIIILDEADSMTA-------------GAQQALRRTMEIYSNTTRF--------------ALACNQSEKIIEPIQSRCAI 166 (333)
T ss_pred eeEEEeeccchhhh-------------HHHHHHHHHHHHHcccchh--------------hhhhcchhhhhhhHHhhhHh
Confidence 35999999999976 4999999999987777776 55556667899999999998
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTE 1157 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~ 1157 (1165)
+.|..|+..++.+-|. +..+.|+| .+|+|++++|...|...=+.+.
T Consensus 167 -LRysklsd~qiL~Rl~-----------~v~k~Ekv--~yt~dgLeaiifta~GDMRQal 212 (333)
T KOG0991|consen 167 -LRYSKLSDQQILKRLL-----------EVAKAEKV--NYTDDGLEAIIFTAQGDMRQAL 212 (333)
T ss_pred -hhhcccCHHHHHHHHH-----------HHHHHhCC--CCCcchHHHhhhhccchHHHHH
Confidence 5999999998877666 55666777 6789999999887765434333
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.5e-12 Score=157.90 Aligned_cols=107 Identities=19% Similarity=0.333 Sum_probs=84.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.++.. .++.||..+|. ...+++||+++ +.|..+.|.+++|+.
T Consensus 119 ~~KVIIIDEad~Lt~~-------------A~NaLLKtLEE----------Pp~~tvfIL~T----t~~~KLl~TI~SRcq 171 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS-------------AWNALLKTLEE----------PPKHVVFIFAT----TEFQKIPLTIISRCQ 171 (605)
T ss_pred CcEEEEEechHhCCHH-------------HHHHHHHHHHh----------CCCcEEEEEEC----CChHhhhHHHHhhhh
Confidence 5789999999999754 56799999985 23466777664 457789999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+ +.|.+|+.+++...|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++.
T Consensus 172 ~-ieF~~Ls~~eL~~~L~-----------~il~kegi--~Is~eal~~La~lS--------~GdlR~AlnlLekL~ 225 (605)
T PRK05896 172 R-YNFKKLNNSELQELLK-----------SIAKKEKI--KIEDNAIDKIADLA--------DGSLRDGLSILDQLS 225 (605)
T ss_pred h-cccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Confidence 5 7999999999998883 23344565 67899999999887 567999999999864
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.5e-13 Score=162.93 Aligned_cols=94 Identities=17% Similarity=0.346 Sum_probs=76.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||..+|.. .++++||+++ ++|..+.|.+++||-
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLEEP----------P~~tifILaT----te~~KLl~TI~SRcq 170 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLEEP----------PKHVIFILAT----TEVHKIPLTILSRVQ 170 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhhcC----------CCceEEEEEc----CChhhhhHHHHhhce
Confidence 4569999999999764 788999999953 3566788776 478889999999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+++|.+|+.+++.++|. ..+..+|+ .++++|++.||..|-.
T Consensus 171 -~ieF~~L~~eeI~~~L~-----------~il~kegI--~id~eAl~~LA~lS~G 211 (725)
T PRK07133 171 -RFNFRRISEDEIVSRLE-----------FILEKENI--SYEKNALKLIAKLSSG 211 (725)
T ss_pred -eEEccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 67999999999999888 45566776 6789999999887753
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.3e-13 Score=159.66 Aligned_cols=93 Identities=23% Similarity=0.378 Sum_probs=73.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .|+.||..+|.. ..++.||.++ ++|..+.|.+++|+.
T Consensus 116 ~~kVVIIDEad~ls~~-------------a~naLLk~LEep----------~~~t~~Il~t----~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 116 GRKVYILDEAHMMSKS-------------AFNALLKTLEEP----------PEHVIFILAT----TEPEKMPPTILSRTQ 168 (504)
T ss_pred CCeEEEEECccccCHH-------------HHHHHHHHHHhC----------CCCEEEEEEc----CChhhCChHHhcceE
Confidence 4569999999988643 688999999852 2345566553 467889999999988
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ++|.+|+.+++.+.|. ..++.+|+ .++++|+..|++.+-
T Consensus 169 ~-~~f~~ls~~el~~~L~-----------~i~~~egi--~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 169 H-FRFRRLTEEEIAGKLR-----------RLLEAEGR--EAEPEALQLVARLAD 208 (504)
T ss_pred E-EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 7999999999998888 55667787 568999999998764
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.7e-13 Score=163.35 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=76.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|++... .|+.||+.||.. .+|+.||++. ++|+.+.+.+++||-
T Consensus 119 ~~KVvIIdev~~Lt~~-------------a~naLLk~LEep----------p~~~~fIl~t----~~~~kl~~tI~SRc~ 171 (576)
T PRK14965 119 RYKIFIIDEVHMLSTN-------------AFNALLKTLEEP----------PPHVKFIFAT----TEPHKVPITILSRCQ 171 (576)
T ss_pred CceEEEEEChhhCCHH-------------HHHHHHHHHHcC----------CCCeEEEEEe----CChhhhhHHHHHhhh
Confidence 4569999999999865 788999999953 3567777665 578889999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
. ++|++++.+++.+.|. ..++.+|+ .++++++..|++.+-.
T Consensus 172 ~-~~f~~l~~~~i~~~L~-----------~i~~~egi--~i~~~al~~la~~a~G 212 (576)
T PRK14965 172 R-FDFRRIPLQKIVDRLR-----------YIADQEGI--SISDAALALVARKGDG 212 (576)
T ss_pred h-hhcCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcCC
Confidence 4 7999999999988887 55667787 6789999999887653
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=155.71 Aligned_cols=124 Identities=19% Similarity=0.332 Sum_probs=94.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.+++. .|+.||..+|. ...++.||.++ +.|..+.|.+++|+.
T Consensus 117 ~~KVvIIDEad~Lt~~-------------A~NALLK~LEE----------pp~~t~FIL~t----td~~kL~~tI~SRc~ 169 (535)
T PRK08451 117 RFKIFIIDEVHMLTKE-------------AFNALLKTLEE----------PPSYVKFILAT----TDPLKLPATILSRTQ 169 (535)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHHhh----------cCCceEEEEEE----CChhhCchHHHhhce
Confidence 5679999999999765 67799999996 24566677664 457889999999976
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+++.+++.+.+. ..+..+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 170 -~~~F~~Ls~~ei~~~L~-----------~Il~~EGi--~i~~~Al~~Ia~~s--------~GdlR~alnlLdqai~--- 224 (535)
T PRK08451 170 -HFRFKQIPQNSIISHLK-----------TILEKEGV--SYEPEALEILARSG--------NGSLRDTLTLLDQAII--- 224 (535)
T ss_pred -eEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHHH---
Confidence 57999999999888773 34556676 67899999999987 5789999999998763
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. .+ .||.+.|.+.++
T Consensus 225 ~~-~~---~It~~~V~~~lg 240 (535)
T PRK08451 225 YC-KN---AITESKVADMLG 240 (535)
T ss_pred hc-CC---CCCHHHHHHHhC
Confidence 22 11 366666665544
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=160.61 Aligned_cols=93 Identities=24% Similarity=0.471 Sum_probs=75.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .++.||+.+|.. ..|+.||+++ ++|..+.|.+++||-
T Consensus 119 ~~kViIIDE~~~Lt~~-------------a~naLLKtLEep----------p~~~ifIlat----t~~~ki~~tI~SRc~ 171 (559)
T PRK05563 119 KYKVYIIDEVHMLSTG-------------AFNALLKTLEEP----------PAHVIFILAT----TEPHKIPATILSRCQ 171 (559)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChhhCcHHHHhHhe
Confidence 3569999999999754 788999999963 3467788774 478889999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|.+++.+++.++|. ..++.+|+ .++++++..||+.+-
T Consensus 172 -~~~f~~~~~~ei~~~L~-----------~i~~~egi--~i~~~al~~ia~~s~ 211 (559)
T PRK05563 172 -RFDFKRISVEDIVERLK-----------YILDKEGI--EYEDEALRLIARAAE 211 (559)
T ss_pred -EEecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999998888 45667787 668999999998664
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-13 Score=131.85 Aligned_cols=72 Identities=28% Similarity=0.520 Sum_probs=53.2
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh-CCCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ-GRFP 498 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~-~R~~ 498 (1165)
++||||||+|++....+. ........+++.|+..++...- ...++++|+++ +.++.+.|.|+ +||+
T Consensus 59 ~~vl~iDe~d~l~~~~~~--~~~~~~~~~~~~L~~~l~~~~~-------~~~~~~vI~tt----n~~~~i~~~l~~~rf~ 125 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQP--SSSSFEQRLLNQLLSLLDNPSS-------KNSRVIVIATT----NSPDKIDPALLRSRFD 125 (132)
T ss_dssp SEEEEEETGGGTSHHCST--SSSHHHHHHHHHHHHHHHTTTT-------TSSSEEEEEEE----SSGGGSCHHHHSTTSE
T ss_pred ceeeeeccchhccccccc--ccccccccccceeeeccccccc-------ccccceeEEee----CChhhCCHhHHhCCCc
Confidence 689999999999988721 2233344567788888886421 13568888885 45788999999 9999
Q ss_pred eeEecC
Q psy2392 499 IRVELD 504 (1165)
Q Consensus 499 ~~v~~~ 504 (1165)
.+++|+
T Consensus 126 ~~i~~~ 131 (132)
T PF00004_consen 126 RRIEFP 131 (132)
T ss_dssp EEEEE-
T ss_pred EEEEcC
Confidence 998874
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=155.89 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=74.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .|+.||..+|.. .++++||++. +++..+.+.+++|+-
T Consensus 121 ~~kvvIIdead~lt~~-------------~~n~LLk~lEep----------~~~~~~Il~t----~~~~kl~~tI~sRc~ 173 (451)
T PRK06305 121 RYKIYIIDEVHMLTKE-------------AFNSLLKTLEEP----------PQHVKFFLAT----TEIHKIPGTILSRCQ 173 (451)
T ss_pred CCEEEEEecHHhhCHH-------------HHHHHHHHhhcC----------CCCceEEEEe----CChHhcchHHHHhce
Confidence 4679999999999764 688999999962 2355666654 467789999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ |+|++|+.+++.+.|. ..++.+|+ .+++++++.|++.+-
T Consensus 174 ~-v~f~~l~~~el~~~L~-----------~~~~~eg~--~i~~~al~~L~~~s~ 213 (451)
T PRK06305 174 K-MHLKRIPEETIIDKLA-----------LIAKQEGI--ETSREALLPIARAAQ 213 (451)
T ss_pred E-EeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 6 6999999999998887 44455676 678999999988764
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=157.16 Aligned_cols=124 Identities=17% Similarity=0.346 Sum_probs=92.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|.++.. .++.||..+|. ...+++||++. +++..+.|.+++|+.
T Consensus 119 ~~KVvIIDEa~~Ls~~-------------a~naLLK~LEe----------pp~~~vfI~~t----te~~kL~~tI~SRc~ 171 (563)
T PRK06647 119 RYRVYIIDEVHMLSNS-------------AFNALLKTIEE----------PPPYIVFIFAT----TEVHKLPATIKSRCQ 171 (563)
T ss_pred CCEEEEEEChhhcCHH-------------HHHHHHHhhcc----------CCCCEEEEEec----CChHHhHHHHHHhce
Confidence 5789999999999754 56789999985 23567777663 456778899999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|.+|+.+++.+.|. ..+..+|+ .++++++++|++.+ +++.|.+.+.+++++.
T Consensus 172 ~-~~f~~l~~~el~~~L~-----------~i~~~egi--~id~eAl~lLa~~s--------~GdlR~alslLdklis--- 226 (563)
T PRK06647 172 H-FNFRLLSLEKIYNMLK-----------KVCLEDQI--KYEDEALKWIAYKS--------TGSVRDAYTLFDQVVS--- 226 (563)
T ss_pred E-EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 5 6999999999988884 22344565 67899999999877 5679999999998853
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. . . .||.+.|++.++
T Consensus 227 ~~-~-~--~It~e~V~~llg 242 (563)
T PRK06647 227 FS-D-S--DITLEQIRSKMG 242 (563)
T ss_pred hc-C-C--CCCHHHHHHHhC
Confidence 21 1 1 266666655443
|
|
| >KOG0732|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=163.21 Aligned_cols=225 Identities=22% Similarity=0.300 Sum_probs=166.0
Q ss_pred hHHHHHHHHhc-ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC-----CC
Q psy2392 172 LVIAEIVSELD-KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN-----AP 245 (1165)
Q Consensus 172 ~~~~~l~~~L~-~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~-----~~ 245 (1165)
.+|......+. +.|.|.++++..+.+.+..++.++.++..... .+|.++||+||||+|||..|+++|..+. ..
T Consensus 253 ~dp~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~i-tpPrgvL~~GppGTGkTl~araLa~~~s~~~~kis 331 (1080)
T KOG0732|consen 253 SDPLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNI-TPPRGVLFHGPPGTGKTLMARALAAACSRGNRKIS 331 (1080)
T ss_pred cCchhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhccc-CCCcceeecCCCCCchhHHHHhhhhhhcccccccc
Confidence 45555555555 68999999999999999998888887775443 3568999999999999999999999992 34
Q ss_pred ceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhh
Q psy2392 246 FIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNIST 325 (1165)
Q Consensus 246 ~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 325 (1165)
|+.-+.++.-+. |+|+. +..++.+|+.+
T Consensus 332 ffmrkgaD~lsk-wvgEa-ERqlrllFeeA-------------------------------------------------- 359 (1080)
T KOG0732|consen 332 FFMRKGADCLSK-WVGEA-ERQLRLLFEEA-------------------------------------------------- 359 (1080)
T ss_pred hhhhcCchhhcc-ccCcH-HHHHHHHHHHH--------------------------------------------------
Confidence 444444554444 88888 55677777663
Q ss_pred HHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcC
Q psy2392 326 RQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLN 405 (1165)
Q Consensus 326 ~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (1165)
.+
T Consensus 360 ---------------------------------------------------------------------------~k--- 361 (1080)
T KOG0732|consen 360 ---------------------------------------------------------------------------QK--- 361 (1080)
T ss_pred ---------------------------------------------------------------------------hc---
Confidence 11
Q ss_pred hhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCC
Q psy2392 406 EDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAK 485 (1165)
Q Consensus 406 ~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~ 485 (1165)
.++.|||+||||-+++.+..- .+--...+...||++|+|-. .+..+++|+|+ +.
T Consensus 362 ------------~qPSIIffdeIdGlapvrSsk--qEqih~SIvSTLLaLmdGld--------sRgqVvvigAT----nR 415 (1080)
T KOG0732|consen 362 ------------TQPSIIFFDEIDGLAPVRSSK--QEQIHASIVSTLLALMDGLD--------SRGQVVVIGAT----NR 415 (1080)
T ss_pred ------------cCceEEeccccccccccccch--HHHhhhhHHHHHHHhccCCC--------CCCceEEEccc----CC
Confidence 268999999999999876431 12223346668999999832 34466777774 68
Q ss_pred CCCCchhhh--CCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCc
Q psy2392 486 PSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGA 563 (1165)
Q Consensus 486 p~~l~pel~--~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GA 563 (1165)
|..+.|+|+ |||+..+.|.-++.++..+|+. +.+....-.+....+.+||+.... .+||
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~-------------Ihtrkw~~~i~~~l~~~la~~t~g------y~ga 476 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILD-------------IHTRKWEPPISRELLLWLAEETSG------YGGA 476 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHH-------------HhccCCCCCCCHHHHHHHHHhccc------cchH
Confidence 999999995 8999999999999999999984 233344446677888899887754 3555
Q ss_pred chhHHHHHHH
Q psy2392 564 RRLYTAMEKL 573 (1165)
Q Consensus 564 R~l~~~ie~~ 573 (1165)
- |+.+....
T Consensus 477 D-lkaLCTeA 485 (1080)
T KOG0732|consen 477 D-LKALCTEA 485 (1080)
T ss_pred H-HHHHHHHH
Confidence 5 77666544
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.2e-12 Score=158.72 Aligned_cols=93 Identities=19% Similarity=0.352 Sum_probs=73.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||..+|.. ..++.||+++ +.|..+.|.+++||-
T Consensus 119 ~~KVIIIDEad~Lt~~-------------A~NaLLKtLEEP----------p~~tvfIL~T----t~~~KLl~TI~SRcq 171 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS-------------AWNALLKTLEEP----------PKHVVFIFAT----TEFQKIPLTIISRCQ 171 (605)
T ss_pred CcEEEEEechHhCCHH-------------HHHHHHHHHHhC----------CCcEEEEEEC----CChHhhhHHHHhhhh
Confidence 4579999999999654 688999999963 2456677655 367889999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|.+|+.+++...|. ..++.+|+ .++++++..|+..|-
T Consensus 172 ~-ieF~~Ls~~eL~~~L~-----------~il~kegi--~Is~eal~~La~lS~ 211 (605)
T PRK05896 172 R-YNFKKLNNSELQELLK-----------SIAKKEKI--KIEDNAIDKIADLAD 211 (605)
T ss_pred h-cccCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 7999999999998888 44556676 678999999888764
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=162.35 Aligned_cols=178 Identities=29% Similarity=0.447 Sum_probs=128.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
.++.|.+.+++.+.+.+... +......... ...+++++|+||||||||++++++++.++.||+.++++++.+. |+|.
T Consensus 152 ~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~-~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~-~~g~ 228 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYL-REPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGV 228 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHh-hCHHHHHhcC-CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh-hhcc
Confidence 57889999988888776532 1111001111 1125789999999999999999999999999999999988765 7766
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++++|..+.
T Consensus 229 ~~-~~~~~~f~~a~------------------------------------------------------------------ 241 (644)
T PRK10733 229 GA-SRVRDMFEQAK------------------------------------------------------------------ 241 (644)
T ss_pred cH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 53 23454443320
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
..+++|
T Consensus 242 --------------------------------------------------------------------------~~~P~I 247 (644)
T PRK10733 242 --------------------------------------------------------------------------KAAPCI 247 (644)
T ss_pred --------------------------------------------------------------------------hcCCcE
Confidence 015689
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
|||||||.++..+..+ .+....++.+-+.||..++|. ...+.++||++.+ .|+.+.|.|+ |||.-
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~--------~~~~~vivIaaTN----~p~~lD~Al~RpgRfdr 315 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--------EGNEGIIVIAATN----RPDVLDPALLRPGRFDR 315 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc--------cCCCCeeEEEecC----ChhhcCHHHhCCcccce
Confidence 9999999999875432 222333444556777778753 2346788988864 7889999998 69999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.++.++.++..+||+
T Consensus 316 ~i~v~~Pd~~~R~~Il~ 332 (644)
T PRK10733 316 QVVVGLPDVRGREQILK 332 (644)
T ss_pred EEEcCCCCHHHHHHHHH
Confidence 99999999999999998
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-12 Score=158.40 Aligned_cols=94 Identities=18% Similarity=0.323 Sum_probs=76.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||+.+|.. ..|+.||.++ +.|..+.|.+++|+.
T Consensus 117 ~~KVvIIDEad~Lt~~-------------A~NALLK~LEEp----------p~~t~FIL~t----td~~kL~~tI~SRc~ 169 (535)
T PRK08451 117 RFKIFIIDEVHMLTKE-------------AFNALLKTLEEP----------PSYVKFILAT----TDPLKLPATILSRTQ 169 (535)
T ss_pred CeEEEEEECcccCCHH-------------HHHHHHHHHhhc----------CCceEEEEEE----CChhhCchHHHhhce
Confidence 3469999999999765 788999999963 3455666665 467889999999986
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+++|.+++.+++.+.|. ..+..+|+ .++++|++.|++.|-.
T Consensus 170 -~~~F~~Ls~~ei~~~L~-----------~Il~~EGi--~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 170 -HFRFKQIPQNSIISHLK-----------TILEKEGV--SYEPEALEILARSGNG 210 (535)
T ss_pred -eEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcCC
Confidence 57999999999988877 55677887 6789999999987654
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.8e-12 Score=151.62 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=92.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .++.||..+|.. ..+++||++. +++..+.+.+++|+.
T Consensus 121 ~~kvvIIdead~lt~~-------------~~n~LLk~lEep----------~~~~~~Il~t----~~~~kl~~tI~sRc~ 173 (451)
T PRK06305 121 RYKIYIIDEVHMLTKE-------------AFNSLLKTLEEP----------PQHVKFFLAT----TEIHKIPGTILSRCQ 173 (451)
T ss_pred CCEEEEEecHHhhCHH-------------HHHHHHHHhhcC----------CCCceEEEEe----CChHhcchHHHHhce
Confidence 5789999999999754 567899999862 2355666553 466789999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ |+|++|+.+++.+.|. ..++.+|+ .+++++++.|+..+ +++.|.+.+.++++..
T Consensus 174 ~-v~f~~l~~~el~~~L~-----------~~~~~eg~--~i~~~al~~L~~~s--------~gdlr~a~~~Lekl~~--- 228 (451)
T PRK06305 174 K-MHLKRIPEETIIDKLA-----------LIAKQEGI--ETSREALLPIARAA--------QGSLRDAESLYDYVVG--- 228 (451)
T ss_pred E-EeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 6 6999999999998873 22344565 57899999999888 5678999999988753
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. .+ .||.+.|.+.++
T Consensus 229 ~~-~~---~It~~~V~~l~~ 244 (451)
T PRK06305 229 LF-PK---SLDPDSVAKALG 244 (451)
T ss_pred hc-cC---CcCHHHHHHHHC
Confidence 21 11 266666655544
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-12 Score=154.27 Aligned_cols=93 Identities=15% Similarity=0.305 Sum_probs=70.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .|+.||+.+|...- +..||+.+ +++..+.|.|++|+-
T Consensus 127 ~~kvvIIdea~~l~~~-------------~~~~LLk~LEep~~----------~t~~Il~t----~~~~kl~~tl~sR~~ 179 (397)
T PRK14955 127 RYRVYIIDEVHMLSIA-------------AFNAFLKTLEEPPP----------HAIFIFAT----TELHKIPATIASRCQ 179 (397)
T ss_pred CeEEEEEeChhhCCHH-------------HHHHHHHHHhcCCC----------CeEEEEEe----CChHHhHHHHHHHHH
Confidence 3469999999999864 67899999995322 33444433 346788999999987
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++.+.+. ..++.+|+ .+++++++.|+..+-
T Consensus 180 ~-v~f~~l~~~ei~~~l~-----------~~~~~~g~--~i~~~al~~l~~~s~ 219 (397)
T PRK14955 180 R-FNFKRIPLEEIQQQLQ-----------GICEAEGI--SVDADALQLIGRKAQ 219 (397)
T ss_pred H-hhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 7999999999988887 44455666 688999999988764
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-12 Score=155.52 Aligned_cols=125 Identities=20% Similarity=0.293 Sum_probs=94.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|.++.. .++.||..+|.. ..++.||++. +++..+.+.+++|+.
T Consensus 132 ~~KVvIIDEad~Ls~~-------------a~naLLKtLEeP----------p~~~~fIl~t----te~~kll~tI~SRcq 184 (598)
T PRK09111 132 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEP----------PPHVKFIFAT----TEIRKVPVTVLSRCQ 184 (598)
T ss_pred CcEEEEEEChHhCCHH-------------HHHHHHHHHHhC----------CCCeEEEEEe----CChhhhhHHHHhhee
Confidence 5789999999999754 466899999862 3456666553 456668889999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+++.+++.+.|. +.+..+|+ .+++++++.|++.+ ++..|.+.+.+++++.
T Consensus 185 -~~~f~~l~~~el~~~L~-----------~i~~kegi--~i~~eAl~lIa~~a--------~Gdlr~al~~Ldkli~--- 239 (598)
T PRK09111 185 -RFDLRRIEADVLAAHLS-----------RIAAKEGV--EVEDEALALIARAA--------EGSVRDGLSLLDQAIA--- 239 (598)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHh---
Confidence 57999999999998884 33445565 67899999999987 5778999999998753
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+. . -.||.+.|++.++.
T Consensus 240 ~g-~---g~It~e~V~~llg~ 256 (598)
T PRK09111 240 HG-A---GEVTAEAVRDMLGL 256 (598)
T ss_pred hc-C---CCcCHHHHHHHhCC
Confidence 22 1 14888888876653
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=147.46 Aligned_cols=136 Identities=19% Similarity=0.317 Sum_probs=92.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...+|||||+|.+... .|+.|+.++|... .+..||.++ ++|+.+.|.|.+|+.
T Consensus 125 ~~~vlilDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~Il~~----~~~~~~~~~L~sr~~ 177 (337)
T PRK12402 125 DYKTILLDNAEALRED-------------AQQALRRIMEQYS----------RTCRFIIAT----RQPSKLIPPIRSRCL 177 (337)
T ss_pred CCcEEEEeCcccCCHH-------------HHHHHHHHHHhcc----------CCCeEEEEe----CChhhCchhhcCCce
Confidence 4579999999988643 4567888887421 122344443 246678889999974
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+++.+++..++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.+++....
T Consensus 178 -~v~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~al~~l~~~~--------~gdlr~l~~~l~~~~~~-- 233 (337)
T PRK12402 178 -PLFFRAPTDDELVDVLE-----------SIAEAEGV--DYDDDGLELIAYYA--------GGDLRKAILTLQTAALA-- 233 (337)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHc--
Confidence 57999999999988884 23445566 48999999999877 46688888877765411
Q ss_pred cccCCCeeEEcccccccccccCccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGDLSINEDLSRYDS 611 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~~~~~~dls~~i~ 611 (1165)
. -.||.+.|++.+.......++..++.
T Consensus 234 -----~-~~It~~~v~~~~~~~~~~~~i~~l~~ 260 (337)
T PRK12402 234 -----A-GEITMEAAYEALGDVGTDEVIESLLD 260 (337)
T ss_pred -----C-CCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 1 14888888876665443344444443
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-12 Score=150.70 Aligned_cols=128 Identities=15% Similarity=0.272 Sum_probs=89.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .|+.||..+|.. ..+.+||.++ +++..+.|.+++|+.
T Consensus 127 ~~kvvIIdea~~l~~~-------------~~~~LLk~LEep----------~~~t~~Il~t----~~~~kl~~tl~sR~~ 179 (397)
T PRK14955 127 RYRVYIIDEVHMLSIA-------------AFNAFLKTLEEP----------PPHAIFIFAT----TELHKIPATIASRCQ 179 (397)
T ss_pred CeEEEEEeChhhCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----CChHHhHHHHHHHHH
Confidence 5679999999999764 456899999852 2344455443 346678899999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ ++|++++.+++.+.+. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++..
T Consensus 180 ~-v~f~~l~~~ei~~~l~-----------~~~~~~g~--~i~~~al~~l~~~s--------~g~lr~a~~~L~kl~~--- 234 (397)
T PRK14955 180 R-FNFKRIPLEEIQQQLQ-----------GICEAEGI--SVDADALQLIGRKA--------QGSMRDAQSILDQVIA--- 234 (397)
T ss_pred H-hhcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 4 7999999999988773 22334454 78999999999988 5678999999988752
Q ss_pred ccc-CCCeeEEcccccccccc
Q psy2392 579 FNS-NNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~-~~~~~~i~~~~v~~~~~ 598 (1165)
|.. .+..-.||.+.|++.+.
T Consensus 235 ~~~~~~~~~~It~~~v~~~v~ 255 (397)
T PRK14955 235 FSVESEGEGSIRYDKVAELLN 255 (397)
T ss_pred hccccCCCCccCHHHHHHHHC
Confidence 211 01112466666655443
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.4e-12 Score=154.09 Aligned_cols=128 Identities=16% Similarity=0.297 Sum_probs=91.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|+++.. .++.||..+|.. ..+++||... +++..+.|.+++|+.
T Consensus 127 ~~KVvIIdEad~Lt~~-------------a~naLLK~LEeP----------p~~tv~IL~t----~~~~kLl~TI~SRc~ 179 (620)
T PRK14954 127 RYRVYIIDEVHMLSTA-------------AFNAFLKTLEEP----------PPHAIFIFAT----TELHKIPATIASRCQ 179 (620)
T ss_pred CCEEEEEeChhhcCHH-------------HHHHHHHHHhCC----------CCCeEEEEEe----CChhhhhHHHHhhce
Confidence 5779999999999754 466899999962 2345555442 356778899999986
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ |+|++++.+++...|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++. +
T Consensus 180 ~-vef~~l~~~ei~~~L~-----------~i~~~egi--~I~~eal~~La~~s--------~Gdlr~al~eLeKL~---~ 234 (620)
T PRK14954 180 R-FNFKRIPLDEIQSQLQ-----------MICRAEGI--QIDADALQLIARKA--------QGSMRDAQSILDQVI---A 234 (620)
T ss_pred E-EecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------CCCHHHHHHHHHHHH---H
Confidence 5 6999999999888773 33444564 67899999999988 577999999999875 2
Q ss_pred ccc-CCCeeEEcccccccccc
Q psy2392 579 FNS-NNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~-~~~~~~i~~~~v~~~~~ 598 (1165)
|.. .+..-.|+.+.|++.+.
T Consensus 235 y~~~~~~~~~It~~~V~~lv~ 255 (620)
T PRK14954 235 FSVGSEAEKVIAYQGVAELLN 255 (620)
T ss_pred hccccccCCccCHHHHHHHHc
Confidence 321 01112466656655443
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.5e-12 Score=149.06 Aligned_cols=105 Identities=18% Similarity=0.321 Sum_probs=79.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...+|||||+|++... ..|..|..++|... .+..||+++ +.++.+.|.+.+||.
T Consensus 100 ~~~vliiDe~d~l~~~------------~~~~~L~~~le~~~----------~~~~~Ilt~----n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA------------DAQRHLRSFMEAYS----------KNCSFIITA----NNKNGIIEPLRSRCR 153 (316)
T ss_pred CCeEEEEECcccccCH------------HHHHHHHHHHHhcC----------CCceEEEEc----CChhhchHHHHhhce
Confidence 4579999999998332 15677888788532 233566554 366789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE 1154 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~ 1154 (1165)
. +.|+.++.++...+++ .++++....++.+|+ .++++++..|++.+...++
T Consensus 154 ~-i~~~~p~~~~~~~il~----~~~~~~~~~~~~~~~--~i~~~al~~l~~~~~~d~r 204 (316)
T PHA02544 154 V-IDFGVPTKEEQIEMMK----QMIVRCKGILEAEGV--EVDMKVLAALVKKNFPDFR 204 (316)
T ss_pred E-EEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCC--CCCHHHHHHHHHhcCCCHH
Confidence 5 6899999999999988 466777778888888 6689999999987665433
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-12 Score=156.03 Aligned_cols=70 Identities=26% Similarity=0.372 Sum_probs=58.5
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+.++|..+ ++++||+++++.+..++... . . + . ++.++||+||||||||++|+++|+.++.+++.+
T Consensus 6 eKyrP~~l-----~dlvg~~~~~~~l~~~l~~~-~-~----g-~---~~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 6 EKYRPKTL-----SDVVGNEKAKEQLREWIESW-L-K----G-K---PKKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred hhcCCCCH-----HHhcCCHHHHHHHHHHHHHH-h-c----C-C---CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 57788777 78999999999999998653 1 1 1 1 147899999999999999999999999999999
Q ss_pred ecCCc
Q psy2392 848 EATKF 852 (1165)
Q Consensus 848 ~~se~ 852 (1165)
++++.
T Consensus 71 nasd~ 75 (482)
T PRK04195 71 NASDQ 75 (482)
T ss_pred ccccc
Confidence 99874
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.1e-12 Score=155.38 Aligned_cols=142 Identities=18% Similarity=0.289 Sum_probs=96.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece------------------eecCceEEEEEeCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG------------------IIKTDHILFIASGA 480 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~------------------~~~t~~ilfI~~ga 480 (1165)
..|++||||++.+.+. .|..|+..++...+....+ .....++++|++++
T Consensus 265 sgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt 331 (615)
T TIGR02903 265 HGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATT 331 (615)
T ss_pred CCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecc
Confidence 5789999999999766 6778999998765432100 01122455555532
Q ss_pred cccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCc
Q psy2392 481 FHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 560 (1165)
Q Consensus 481 f~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~ 560 (1165)
.+|+.+.|.|++||.. +.|.+|+.+|+..|+.. . +...+ +.+++++++.|++.+
T Consensus 332 ---~~~~~l~~aLrSR~~~-i~~~pls~edi~~Il~~----~-------a~~~~--v~ls~eal~~L~~ys--------- 385 (615)
T TIGR02903 332 ---RDPEEINPALRSRCAE-VFFEPLTPEDIALIVLN----A-------AEKIN--VHLAAGVEELIARYT--------- 385 (615)
T ss_pred ---ccccccCHHHHhceeE-EEeCCCCHHHHHHHHHH----H-------HHHcC--CCCCHHHHHHHHHCC---------
Confidence 4577899999999985 58999999999999951 1 22223 368899999998854
Q ss_pred cCcchhHHHHHHHHHHhhccc-----CCCeeEEccccccccccc
Q psy2392 561 IGARRLYTAMEKLLEEVSFNS-----NNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 561 ~GAR~l~~~ie~~l~~~~~~~-----~~~~~~i~~~~v~~~~~~ 599 (1165)
.++|+..+.++.+..-..+.. .+....|+.+.|++.++.
T Consensus 386 ~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~ 429 (615)
T TIGR02903 386 IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQI 429 (615)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCC
Confidence 246888888877653322211 112267888888887774
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.1e-12 Score=156.38 Aligned_cols=93 Identities=17% Similarity=0.324 Sum_probs=72.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .|+.||+.+|... .+..||+.. +++..+.|.+++|+-
T Consensus 127 ~~KVvIIdEad~Lt~~-------------a~naLLK~LEePp----------~~tv~IL~t----~~~~kLl~TI~SRc~ 179 (620)
T PRK14954 127 RYRVYIIDEVHMLSTA-------------AFNAFLKTLEEPP----------PHAIFIFAT----TELHKIPATIASRCQ 179 (620)
T ss_pred CCEEEEEeChhhcCHH-------------HHHHHHHHHhCCC----------CCeEEEEEe----CChhhhhHHHHhhce
Confidence 3569999999999764 6889999999632 234455433 356789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|.+++.+++...|. ..++.+|+ .+++++++.|++.+-
T Consensus 180 ~-vef~~l~~~ei~~~L~-----------~i~~~egi--~I~~eal~~La~~s~ 219 (620)
T PRK14954 180 R-FNFKRIPLDEIQSQLQ-----------MICRAEGI--QIDADALQLIARKAQ 219 (620)
T ss_pred E-EecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhC
Confidence 6 6999999999988777 45556676 678999999988764
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-12 Score=151.09 Aligned_cols=124 Identities=18% Similarity=0.282 Sum_probs=92.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|+++.. .++.||..+|.. ..+++||.++ +++..+.+.+++|+.
T Consensus 119 ~~KVvIIDEad~Lt~~-------------a~naLLk~LEep----------p~~~v~Il~t----t~~~kl~~tI~SRc~ 171 (486)
T PRK14953 119 KYKVYIIDEAHMLTKE-------------AFNALLKTLEEP----------PPRTIFILCT----TEYDKIPPTILSRCQ 171 (486)
T ss_pred CeeEEEEEChhhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEE----CCHHHHHHHHHHhce
Confidence 5679999999999754 456899998852 3455666553 356668889999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++.|.+++.+++...|. ..++.+|+ .+++++++.|++.+ +++.|.+.+.+++++.
T Consensus 172 -~i~f~~ls~~el~~~L~-----------~i~k~egi--~id~~al~~La~~s--------~G~lr~al~~Ldkl~~--- 226 (486)
T PRK14953 172 -RFIFSKPTKEQIKEYLK-----------RICNEEKI--EYEEKALDLLAQAS--------EGGMRDAASLLDQAST--- 226 (486)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 57999999999998883 33445565 78999999999876 5779999999998863
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. + -.||.+.|++.++
T Consensus 227 ~~--~--~~It~~~V~~~lg 242 (486)
T PRK14953 227 YG--E--GKVTIKVVEEFLG 242 (486)
T ss_pred hc--C--CCcCHHHHHHHhC
Confidence 31 2 1477777776555
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.8e-12 Score=154.82 Aligned_cols=93 Identities=16% Similarity=0.302 Sum_probs=74.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|.+... .|+.||+.+|.. ..++.||++. ++|..+.|.|++|+-
T Consensus 119 ~~KVvIIDEa~~Ls~~-------------a~naLLK~LEep----------p~~~vfI~~t----te~~kL~~tI~SRc~ 171 (563)
T PRK06647 119 RYRVYIIDEVHMLSNS-------------AFNALLKTIEEP----------PPYIVFIFAT----TEVHKLPATIKSRCQ 171 (563)
T ss_pred CCEEEEEEChhhcCHH-------------HHHHHHHhhccC----------CCCEEEEEec----CChHHhHHHHHHhce
Confidence 4569999999999754 788999999952 2456777654 467788899999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ++|.+|+.+++.+.|. ..+..+|+ .++++|+..||+.+-
T Consensus 172 ~-~~f~~l~~~el~~~L~-----------~i~~~egi--~id~eAl~lLa~~s~ 211 (563)
T PRK06647 172 H-FNFRLLSLEKIYNMLK-----------KVCLEDQI--KYEDEALKWIAYKST 211 (563)
T ss_pred E-EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 5 6999999999988887 34455676 678999999998655
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.6e-12 Score=147.13 Aligned_cols=93 Identities=24% Similarity=0.468 Sum_probs=71.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .|+.||..+|.. ..+..||.++ ++++.+.|.+++|+.
T Consensus 108 ~~kiviIDE~~~l~~~-------------~~~~ll~~le~~----------~~~~~~Il~~----~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 108 KYKIYIIDEVHMLSSA-------------AFNAFLKTLEEP----------PAHAIFILAT----TEKHKIIPTILSRCQ 160 (367)
T ss_pred CcEEEEEeChhhcCHH-------------HHHHHHHHHhCC----------CCceEEEEEe----CCcccCCHHHHhcce
Confidence 3469999999998754 577899988852 2234455543 367789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++..++. ..+..+|+ .+++++++.|+..+-
T Consensus 161 ~-v~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~al~~l~~~~~ 200 (367)
T PRK14970 161 I-FDFKRITIKDIKEHLA-----------GIAVKEGI--KFEDDALHIIAQKAD 200 (367)
T ss_pred e-EecCCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhCC
Confidence 6 7999999999998888 44556677 678999999988653
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.2e-12 Score=146.16 Aligned_cols=93 Identities=20% Similarity=0.449 Sum_probs=71.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .++.||..+|... .++.||+++ ++|+.+.|.+++|+.
T Consensus 117 ~~~vviidea~~l~~~-------------~~~~Ll~~le~~~----------~~~~lIl~~----~~~~~l~~~l~sr~~ 169 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKS-------------AFNALLKTLEEPP----------EHVVFILAT----TEPHKIPATILSRCQ 169 (355)
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHhCCc----------cceeEEEEe----CCHHHHHHHHHhhee
Confidence 3469999999999654 6788999998632 344555543 467778899999986
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.++|++++.+++.+++. ..++.+|+ .++++++..|++.+-
T Consensus 170 -~~~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 170 -RFDFKRIPLEDIVERLK-----------KILDKEGI--KIEDEALELIARAAD 209 (355)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999999888 34455676 678999999987664
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=143.62 Aligned_cols=107 Identities=21% Similarity=0.451 Sum_probs=81.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .++.||..+|.. ..+.+||.++ +++..+.|.+++|+.
T Consensus 108 ~~kiviIDE~~~l~~~-------------~~~~ll~~le~~----------~~~~~~Il~~----~~~~kl~~~l~sr~~ 160 (367)
T PRK14970 108 KYKIYIIDEVHMLSSA-------------AFNAFLKTLEEP----------PAHAIFILAT----TEKHKIIPTILSRCQ 160 (367)
T ss_pred CcEEEEEeChhhcCHH-------------HHHHHHHHHhCC----------CCceEEEEEe----CCcccCCHHHHhcce
Confidence 4679999999988654 456888888752 2344455543 356788999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+ |+|++++.+++..++. ..+..+|+ .+++++++.|+..+ +++.|.+.+.++++.
T Consensus 161 ~-v~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~al~~l~~~~--------~gdlr~~~~~lekl~ 214 (367)
T PRK14970 161 I-FDFKRITIKDIKEHLA-----------GIAVKEGI--KFEDDALHIIAQKA--------DGALRDALSIFDRVV 214 (367)
T ss_pred e-EecCCccHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Confidence 5 7999999999998884 22344565 67899999999876 567999999999886
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.4e-12 Score=151.45 Aligned_cols=124 Identities=19% Similarity=0.335 Sum_probs=100.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|.+|||+|-+++. ..+.||..+|- ..+|+.||.++ ..|..+.+..++|+.
T Consensus 119 ryKVyiIDEvHMLS~~-------------afNALLKTLEE----------PP~hV~FIlAT----Te~~Kip~TIlSRcq 171 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ-------------AFNALLKTLEE----------PPSHVKFILAT----TEPQKIPNTILSRCQ 171 (515)
T ss_pred cceEEEEecHHhhhHH-------------HHHHHhccccc----------CccCeEEEEec----CCcCcCchhhhhccc
Confidence 5789999999999887 45599999986 67899999884 578889999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.. .|+.|+.+++..-| ...+..+|| .++++|+..|++.+ +++.|-..+++++++.-.
T Consensus 172 ~f-~fkri~~~~I~~~L-----------~~i~~~E~I--~~e~~aL~~ia~~a--------~Gs~RDalslLDq~i~~~- 228 (515)
T COG2812 172 RF-DFKRLDLEEIAKHL-----------AAILDKEGI--NIEEDALSLIARAA--------EGSLRDALSLLDQAIAFG- 228 (515)
T ss_pred cc-cccCCCHHHHHHHH-----------HHHHHhcCC--ccCHHHHHHHHHHc--------CCChhhHHHHHHHHHHcc-
Confidence 75 89999999888777 345566776 78899999999988 689999999999987431
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. -.||.+.|++.++
T Consensus 229 --~----~~It~~~v~~~lG 242 (515)
T COG2812 229 --E----GEITLESVRDMLG 242 (515)
T ss_pred --C----CcccHHHHHHHhC
Confidence 1 1377777776655
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=152.83 Aligned_cols=107 Identities=17% Similarity=0.371 Sum_probs=85.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|+++.. .|+.||..+|.. ..+.+||++. +++..+.|.+++|+.
T Consensus 121 ~~KVvIIdea~~Ls~~-------------a~naLLK~LEep----------p~~tifIL~t----t~~~kIl~tI~SRc~ 173 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA-------------AFNAFLKTLEEP----------PSYAIFILAT----TEKHKILPTILSRCQ 173 (614)
T ss_pred CcEEEEEECcccCCHH-------------HHHHHHHHHhCC----------CCCeEEEEEe----CCchhchHHHHhhhh
Confidence 5779999999999754 577999999962 3455666653 356789999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+ +.|++++.+++.+.|. ..+..+|+ .+++++++.|+..+ +++.|.+.+.++++.
T Consensus 174 i-v~f~~ls~~ei~~~L~-----------~ia~~egi--~i~~~al~~La~~s--------~gdlr~al~~Lekl~ 227 (614)
T PRK14971 174 I-FDFNRIQVADIVNHLQ-----------YVASKEGI--TAEPEALNVIAQKA--------DGGMRDALSIFDQVV 227 (614)
T ss_pred e-eecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 7 6999999999998873 33455665 68899999999888 578999999998875
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=143.07 Aligned_cols=124 Identities=22% Similarity=0.438 Sum_probs=89.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|++... .++.||..+|.. ..+++||+++ ++++.+.|.+++|+.
T Consensus 117 ~~~vviidea~~l~~~-------------~~~~Ll~~le~~----------~~~~~lIl~~----~~~~~l~~~l~sr~~ 169 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKS-------------AFNALLKTLEEP----------PEHVVFILAT----TEPHKIPATILSRCQ 169 (355)
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHhCC----------ccceeEEEEe----CCHHHHHHHHHhhee
Confidence 4679999999999654 466899988862 2345565553 456678899999986
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.++|.+++.+++.+++. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++..
T Consensus 170 -~~~~~~~~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~--------~g~~~~a~~~lekl~~--- 224 (355)
T TIGR02397 170 -RFDFKRIPLEDIVERLK-----------KILDKEGI--KIEDEALELIARAA--------DGSLRDALSLLDQLIS--- 224 (355)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCChHHHHHHHHHHHh---
Confidence 57999999999998884 22344565 67899999999876 4578889998888764
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+. .. .||.+.|++.+.
T Consensus 225 ~~--~~--~it~~~v~~~~~ 240 (355)
T TIGR02397 225 FG--NG--NITYEDVNELLG 240 (355)
T ss_pred hc--CC--CCCHHHHHHHhC
Confidence 21 11 266666665443
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.6e-12 Score=150.90 Aligned_cols=93 Identities=17% Similarity=0.290 Sum_probs=72.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|++|||+|++... .++.||..+|.. ..|++||.++ +++..+.+.+++|+.
T Consensus 119 ~~KVvIIDEad~Lt~~-------------a~naLLk~LEep----------p~~~v~Il~t----t~~~kl~~tI~SRc~ 171 (486)
T PRK14953 119 KYKVYIIDEAHMLTKE-------------AFNALLKTLEEP----------PPRTIFILCT----TEYDKIPPTILSRCQ 171 (486)
T ss_pred CeeEEEEEChhhcCHH-------------HHHHHHHHHhcC----------CCCeEEEEEE----CCHHHHHHHHHHhce
Confidence 4569999999999764 678999999853 2355666554 356678889999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|.+++.+++.++|. ..++.+|+ .++++|+..|++.+-
T Consensus 172 -~i~f~~ls~~el~~~L~-----------~i~k~egi--~id~~al~~La~~s~ 211 (486)
T PRK14953 172 -RFIFSKPTKEQIKEYLK-----------RICNEEKI--EYEEKALDLLAQASE 211 (486)
T ss_pred -EEEcCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999998888 45666776 778999999987654
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-11 Score=152.36 Aligned_cols=107 Identities=16% Similarity=0.334 Sum_probs=82.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|++... .++.||..+|.. ..+++||+++ ++|..+.|.+++|+.
T Consensus 121 ~~KViIIDEad~Lt~~-------------a~naLLK~LEeP----------p~~tvfIL~t----~~~~~llpTIrSRc~ 173 (620)
T PRK14948 121 RWKVYVIDECHMLSTA-------------AFNALLKTLEEP----------PPRVVFVLAT----TDPQRVLPTIISRCQ 173 (620)
T ss_pred CceEEEEECccccCHH-------------HHHHHHHHHhcC----------CcCeEEEEEe----CChhhhhHHHHhhee
Confidence 4679999999999754 567999999952 3456677653 467789999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
. +.|.+++.+++...|. .++..+|+ .++++++..|++.+ +++.|++.+.++++.
T Consensus 174 ~-~~f~~l~~~ei~~~L~-----------~ia~kegi--~is~~al~~La~~s--------~G~lr~A~~lLekls 227 (620)
T PRK14948 174 R-FDFRRIPLEAMVQHLS-----------EIAEKESI--EIEPEALTLVAQRS--------QGGLRDAESLLDQLS 227 (620)
T ss_pred E-EEecCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 5 6999999998887773 22334455 57899999999887 577899998888753
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-12 Score=145.45 Aligned_cols=92 Identities=23% Similarity=0.426 Sum_probs=69.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...+|||||+|.+... .|+.|+.++|... .+..||.++. +|+.+.+.|.+|+-
T Consensus 125 ~~~vlilDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~Il~~~----~~~~~~~~L~sr~~ 177 (337)
T PRK12402 125 DYKTILLDNAEALRED-------------AQQALRRIMEQYS----------RTCRFIIATR----QPSKLIPPIRSRCL 177 (337)
T ss_pred CCcEEEEeCcccCCHH-------------HHHHHHHHHHhcc----------CCCeEEEEeC----ChhhCchhhcCCce
Confidence 3569999999988543 6778888888532 1123444432 56778899999974
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.++|.+++.+++.++|. ..++.+|+ .+++++++.|++.+
T Consensus 178 -~v~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~al~~l~~~~ 216 (337)
T PRK12402 178 -PLFFRAPTDDELVDVLE-----------SIAEAEGV--DYDDDGLELIAYYA 216 (337)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 57999999999998888 44566777 58899999999876
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=148.76 Aligned_cols=61 Identities=30% Similarity=0.422 Sum_probs=51.4
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+++||++++..+..++... .. .+ ++.++||+||||||||++|+++|+.++.+++.+++++.
T Consensus 15 dlvg~~~~~~~l~~~l~~~-~~------g~---~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESW-LK------GK---PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred HhcCCHHHHHHHHHHHHHH-hc------CC---CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 6889999999999988652 21 11 14799999999999999999999999999999998874
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.1e-12 Score=154.57 Aligned_cols=93 Identities=20% Similarity=0.333 Sum_probs=73.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .++.||+.+|... .|+.||++. +++..+.+.+++||-
T Consensus 132 ~~KVvIIDEad~Ls~~-------------a~naLLKtLEePp----------~~~~fIl~t----te~~kll~tI~SRcq 184 (598)
T PRK09111 132 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEPP----------PHVKFIFAT----TEIRKVPVTVLSRCQ 184 (598)
T ss_pred CcEEEEEEChHhCCHH-------------HHHHHHHHHHhCC----------CCeEEEEEe----CChhhhhHHHHhhee
Confidence 4569999999999765 6789999999632 344555543 466678899999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++|.+++.+++.+.|. ..++.+|+ .+++++++.|+..+-
T Consensus 185 -~~~f~~l~~~el~~~L~-----------~i~~kegi--~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 185 -RFDLRRIEADVLAAHLS-----------RIAAKEGV--EVEDEALALIARAAE 224 (598)
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999998888 45567777 678999999888664
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=153.56 Aligned_cols=93 Identities=17% Similarity=0.357 Sum_probs=74.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|.+... .|+.||+.+|... ++..||++. +++..+.|.|++||-
T Consensus 121 ~~KVvIIdea~~Ls~~-------------a~naLLK~LEepp----------~~tifIL~t----t~~~kIl~tI~SRc~ 173 (614)
T PRK14971 121 KYKIYIIDEVHMLSQA-------------AFNAFLKTLEEPP----------SYAIFILAT----TEKHKILPTILSRCQ 173 (614)
T ss_pred CcEEEEEECcccCCHH-------------HHHHHHHHHhCCC----------CCeEEEEEe----CCchhchHHHHhhhh
Confidence 3469999999999764 7889999999632 344566554 367789999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ ++|++++.+++.+.|. ..+..+|+ .+++++++.|+..+-
T Consensus 174 i-v~f~~ls~~ei~~~L~-----------~ia~~egi--~i~~~al~~La~~s~ 213 (614)
T PRK14971 174 I-FDFNRIQVADIVNHLQ-----------YVASKEGI--TAEPEALNVIAQKAD 213 (614)
T ss_pred e-eecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 7 6999999999998887 45666787 678999999988764
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.5e-11 Score=139.60 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=90.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
+..||+|||+|.+....+. +-..|+.+.+- ......++.+|+.++- ..-++.+.|.+.+||.
T Consensus 129 ~~~vlvIDE~d~L~~~~~~----------~L~~l~~~~~~-------~~~~~~~v~lI~i~n~-~~~~~~l~~~~~s~~~ 190 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDDD----------LLYQLSRARSN-------GDLDNAKVGVIGISND-LKFRENLDPRVKSSLC 190 (365)
T ss_pred CeEEEEECchhhhccCCcH----------HHHhHhccccc-------cCCCCCeEEEEEEECC-cchHhhcCHHHhccCC
Confidence 4679999999999833211 22234433211 1123356677776532 1123458888889984
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..|.|+|++.+++.+|+. . .. +.....-.+++++++.+++.+.. ..+.+|.+..++.++.+..
T Consensus 191 ~~~i~f~p~~~~e~~~il~---~-r~-------~~~~~~~~~~~~~l~~i~~~~~~-----~~Gd~R~al~~l~~a~~~a 254 (365)
T TIGR02928 191 EEEIIFPPYDAEELRDILE---N-RA-------EKAFYDGVLDDGVIPLCAALAAQ-----EHGDARKAIDLLRVAGEIA 254 (365)
T ss_pred cceeeeCCCCHHHHHHHHH---H-HH-------HhhccCCCCChhHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHH
Confidence 678999999999999995 1 11 10011224889999999988765 3578999999998877543
Q ss_pred hcccCCCeeEEccccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
..+- .-.||.+.|++.+..
T Consensus 255 ~~~~---~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 255 EREG---AERVTEDHVEKAQEK 273 (365)
T ss_pred HHcC---CCCCCHHHHHHHHHH
Confidence 2211 124777777665543
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=143.49 Aligned_cols=87 Identities=21% Similarity=0.437 Sum_probs=64.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.|+||||+|++++. .++.||+.+|.. ..+.+||.+. ++|+.+.|.+++|+.
T Consensus 117 ~~kViiIDead~m~~~-------------aanaLLk~LEep----------~~~~~fIL~a----~~~~~llpTIrSRc~ 169 (394)
T PRK07940 117 RWRIVVIEDADRLTER-------------AANALLKAVEEP----------PPRTVWLLCA----PSPEDVLPTIRSRCR 169 (394)
T ss_pred CcEEEEEechhhcCHH-------------HHHHHHHHhhcC----------CCCCeEEEEE----CChHHChHHHHhhCe
Confidence 5679999999999866 456899999862 2344454442 458899999999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
.+.|++++.+++.+.|. +..| +++++.+.++..+
T Consensus 170 -~i~f~~~~~~~i~~~L~--------------~~~~----~~~~~a~~la~~s 203 (394)
T PRK07940 170 -HVALRTPSVEAVAEVLV--------------RRDG----VDPETARRAARAS 203 (394)
T ss_pred -EEECCCCCHHHHHHHHH--------------HhcC----CCHHHHHHHHHHc
Confidence 57999999999888773 1113 4577777777666
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=150.23 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=90.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .++.||..+|.. ..+.+||... +++..+.+.+.+|+.
T Consensus 120 ~~kVvIIDEa~~L~~~-------------a~naLLk~LEep----------p~~tv~Il~t----~~~~kll~tI~SR~~ 172 (585)
T PRK14950 120 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEP----------PPHAIFILAT----TEVHKVPATILSRCQ 172 (585)
T ss_pred CeEEEEEeChHhCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----CChhhhhHHHHhccc
Confidence 5789999999999754 456899999863 2345566542 355668899999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|++++..++..++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.++++..
T Consensus 173 ~-i~f~~l~~~el~~~L~-----------~~a~~egl--~i~~eal~~La~~s--------~Gdlr~al~~LekL~~--- 227 (585)
T PRK14950 173 R-FDFHRHSVADMAAHLR-----------KIAAAEGI--NLEPGALEAIARAA--------TGSMRDAENLLQQLAT--- 227 (585)
T ss_pred e-eeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH---
Confidence 5 7999999999888873 23344565 57899999999877 5678999999998743
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
|. + -.||.+.|++.+.
T Consensus 228 y~--~--~~It~e~V~~ll~ 243 (585)
T PRK14950 228 TY--G--GEISLSQVQSLLG 243 (585)
T ss_pred hc--C--CCCCHHHHHHHhc
Confidence 21 1 1367666665544
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.1e-11 Score=137.35 Aligned_cols=114 Identities=18% Similarity=0.330 Sum_probs=81.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.+|||||+|++... ..|..|..++|.. ..+..||+++ +.++.+.|.+.+|+.
T Consensus 100 ~~~vliiDe~d~l~~~------------~~~~~L~~~le~~----------~~~~~~Ilt~----n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY----------SKNCSFIITA----NNKNGIIEPLRSRCR 153 (316)
T ss_pred CCeEEEEECcccccCH------------HHHHHHHHHHHhc----------CCCceEEEEc----CChhhchHHHHhhce
Confidence 4679999999988322 1455677777742 2334566654 356779999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
. +.|+.++.++..+++. .+..+....+..+|+ .++++++..+++.+ ..+.|++.+.++..
T Consensus 154 ~-i~~~~p~~~~~~~il~----~~~~~~~~~~~~~~~--~i~~~al~~l~~~~--------~~d~r~~l~~l~~~ 213 (316)
T PHA02544 154 V-IDFGVPTKEEQIEMMK----QMIVRCKGILEAEGV--EVDMKVLAALVKKN--------FPDFRRTINELQRY 213 (316)
T ss_pred E-EEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHH
Confidence 5 6899999999998884 355555666667776 56899999998765 35667777767654
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=151.85 Aligned_cols=92 Identities=15% Similarity=0.335 Sum_probs=71.8
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||||||+|++... .|+.||+.+|... .+++||++. ++|+.+.|.|++||-+
T Consensus 122 ~KViIIDEad~Lt~~-------------a~naLLK~LEePp----------~~tvfIL~t----~~~~~llpTIrSRc~~ 174 (620)
T PRK14948 122 WKVYVIDECHMLSTA-------------AFNALLKTLEEPP----------PRVVFVLAT----TDPQRVLPTIISRCQR 174 (620)
T ss_pred ceEEEEECccccCHH-------------HHHHHHHHHhcCC----------cCeEEEEEe----CChhhhhHHHHhheeE
Confidence 469999999999764 7889999999532 345666654 3688899999999965
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++|.+++.+++.+.|. .+++.+|+ .++++++..|++.+.
T Consensus 175 -~~f~~l~~~ei~~~L~-----------~ia~kegi--~is~~al~~La~~s~ 213 (620)
T PRK14948 175 -FDFRRIPLEAMVQHLS-----------EIAEKESI--EIEPEALTLVAQRSQ 213 (620)
T ss_pred -EEecCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcC
Confidence 6999999999887777 44455666 578888888887764
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.5e-11 Score=138.77 Aligned_cols=144 Identities=17% Similarity=0.108 Sum_probs=90.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC-
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~- 497 (1165)
.+.||+|||+|.+...... .+...|+..++.. ...++.+|+.|+- ..-+..+.|.+.+|+
T Consensus 138 ~~~viviDE~d~l~~~~~~---------~~l~~l~~~~~~~---------~~~~v~vI~i~~~-~~~~~~l~~~~~s~~~ 198 (394)
T PRK00411 138 RVLIVALDDINYLFEKEGN---------DVLYSLLRAHEEY---------PGARIGVIGISSD-LTFLYILDPRVKSVFR 198 (394)
T ss_pred CEEEEEECCHhHhhccCCc---------hHHHHHHHhhhcc---------CCCeEEEEEEECC-cchhhhcCHHHHhcCC
Confidence 4569999999999822111 1333454444321 1236667777642 122334778888887
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+..|.|+|++.+++.+|+... + +.....-.+++++++.+++.+.. ..+++|.+..++.++.+..
T Consensus 199 ~~~i~f~py~~~e~~~il~~r---~--------~~~~~~~~~~~~~l~~i~~~~~~-----~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 199 PEEIYFPPYTADEIFDILKDR---V--------EEGFYPGVVDDEVLDLIADLTAR-----EHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cceeecCCCCHHHHHHHHHHH---H--------HhhcccCCCCHhHHHHHHHHHHH-----hcCcHHHHHHHHHHHHHHH
Confidence 467899999999999999521 1 11111225899999999998865 3577999998888766543
Q ss_pred hcccCCCeeEEcccccccccccC
Q psy2392 578 SFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
...- .-.||.+.|++.+...
T Consensus 263 ~~~~---~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 263 EREG---SRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHcC---CCCcCHHHHHHHHHHH
Confidence 2211 1347777776655533
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=151.32 Aligned_cols=93 Identities=19% Similarity=0.340 Sum_probs=71.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||||||+|++... .++.||+.+|... .+.+||+.. +++..+.+.+.+|+-
T Consensus 120 ~~kVvIIDEa~~L~~~-------------a~naLLk~LEepp----------~~tv~Il~t----~~~~kll~tI~SR~~ 172 (585)
T PRK14950 120 RYKVYIIDEVHMLSTA-------------AFNALLKTLEEPP----------PHAIFILAT----TEVHKVPATILSRCQ 172 (585)
T ss_pred CeEEEEEeChHhCCHH-------------HHHHHHHHHhcCC----------CCeEEEEEe----CChhhhhHHHHhccc
Confidence 4569999999999764 6789999999632 344565543 356678899999987
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ++|++++.+++.+++. ..+..+|+ .++++++..|++.+-
T Consensus 173 ~-i~f~~l~~~el~~~L~-----------~~a~~egl--~i~~eal~~La~~s~ 212 (585)
T PRK14950 173 R-FDFHRHSVADMAAHLR-----------KIAAAEGI--NLEPGALEAIARAAT 212 (585)
T ss_pred e-eeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 4 7999999999988887 44555676 578999998887664
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=133.15 Aligned_cols=131 Identities=17% Similarity=0.230 Sum_probs=85.0
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGR 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~R 496 (1165)
..++|||||+.+...... .+.++..+....|. .++-+|.||. ..|.. +.|.|++|
T Consensus 98 ~dlliiDdi~~~~~~~~~-------~~~lf~l~n~~~e~------------g~~~li~ts~---~~p~~l~~~~~~L~SR 155 (235)
T PRK08084 98 LSLVCIDNIECIAGDELW-------EMAIFDLYNRILES------------GRTRLLITGD---RPPRQLNLGLPDLASR 155 (235)
T ss_pred CCEEEEeChhhhcCCHHH-------HHHHHHHHHHHHHc------------CCCeEEEeCC---CChHHcCcccHHHHHH
Confidence 358999999998754221 12233344444442 1222444543 33444 67999999
Q ss_pred CC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 497 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 497 ~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+. ..+.|++|+.+++.+||. +....+| +.++++++++|++.+ ..++|.|..+++++.
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~-----------~~a~~~~--~~l~~~v~~~L~~~~--------~~d~r~l~~~l~~l~ 214 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQ-----------LRARLRG--FELPEDVGRFLLKRL--------DREMRTLFMTLDQLD 214 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhh--------cCCHHHHHHHHHHHH
Confidence 95 667999999999999984 1122334 588999999999988 568999999999964
Q ss_pred HHhhcccCCCeeEEccccccccc
Q psy2392 575 EEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
. .+.. .+ ..||.+.+++.+
T Consensus 215 ~-~~l~-~~--~~it~~~~k~~l 233 (235)
T PRK08084 215 R-ASIT-AQ--RKLTIPFVKEIL 233 (235)
T ss_pred H-HHHh-cC--CCCCHHHHHHHH
Confidence 2 2211 11 236766666544
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=141.15 Aligned_cols=70 Identities=21% Similarity=0.477 Sum_probs=55.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+||||+|++... .|+.||+.+|... .+.+||.+. ++|+.+.|.+++||-
T Consensus 117 ~~kViiIDead~m~~~-------------aanaLLk~LEep~----------~~~~fIL~a----~~~~~llpTIrSRc~ 169 (394)
T PRK07940 117 RWRIVVIEDADRLTER-------------AANALLKAVEEPP----------PRTVWLLCA----PSPEDVLPTIRSRCR 169 (394)
T ss_pred CcEEEEEechhhcCHH-------------HHHHHHHHhhcCC----------CCCeEEEEE----CChHHChHHHHhhCe
Confidence 3459999999999775 6789999999632 233444443 358999999999996
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
.+.|++++.+++.+.|.
T Consensus 170 -~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 170 -HVALRTPSVEAVAEVLV 186 (394)
T ss_pred -EEECCCCCHHHHHHHHH
Confidence 57999999999998886
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-11 Score=146.37 Aligned_cols=94 Identities=20% Similarity=0.405 Sum_probs=81.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+.|++|||+|-+.+. ..+.||+.+|. -..|+.||+++. .|..+.+.+++||-
T Consensus 119 ryKVyiIDEvHMLS~~-------------afNALLKTLEE----------PP~hV~FIlATT----e~~Kip~TIlSRcq 171 (515)
T COG2812 119 RYKVYIIDEVHMLSKQ-------------AFNALLKTLEE----------PPSHVKFILATT----EPQKIPNTILSRCQ 171 (515)
T ss_pred cceEEEEecHHhhhHH-------------HHHHHhccccc----------CccCeEEEEecC----CcCcCchhhhhccc
Confidence 3569999999999987 67799999996 458999998864 88889999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
. ..|+.|+.+++.+-|. .++..||+ .++++|+..||+.|-.
T Consensus 172 ~-f~fkri~~~~I~~~L~-----------~i~~~E~I--~~e~~aL~~ia~~a~G 212 (515)
T COG2812 172 R-FDFKRLDLEEIAKHLA-----------AILDKEGI--NIEEDALSLIARAAEG 212 (515)
T ss_pred c-ccccCCCHHHHHHHHH-----------HHHHhcCC--ccCHHHHHHHHHHcCC
Confidence 6 5999999999988887 77888898 7889999999987754
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.2e-11 Score=143.97 Aligned_cols=117 Identities=23% Similarity=0.309 Sum_probs=84.2
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
..||+|||||.|.+.. |..|+.+++-.. .....+.+|+..+ ...-|..+.|.+++||..
T Consensus 870 v~IIILDEID~L~kK~-------------QDVLYnLFR~~~-------~s~SKLiLIGISN-dlDLperLdPRLRSRLg~ 928 (1164)
T PTZ00112 870 VSILIIDEIDYLITKT-------------QKVLFTLFDWPT-------KINSKLVLIAISN-TMDLPERLIPRCRSRLAF 928 (1164)
T ss_pred ceEEEeehHhhhCccH-------------HHHHHHHHHHhh-------ccCCeEEEEEecC-chhcchhhhhhhhhcccc
Confidence 4599999999998652 335666665321 1233566777643 234566788999999875
Q ss_pred -eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 500 -RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 500 -~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
++.|+|++.+++.+||.. . +.. ..-.|+++|++.+|+.++. .+++||+...+++++.+
T Consensus 929 eeIvF~PYTaEQL~dILk~----R-------Ae~--A~gVLdDdAIELIArkVAq-----~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 929 GRLVFSPYKGDEIEKIIKE----R-------LEN--CKEIIDHTAIQLCARKVAN-----VSGDIRKALQICRKAFE 987 (1164)
T ss_pred ccccCCCCCHHHHHHHHHH----H-------HHh--CCCCCCHHHHHHHHHhhhh-----cCCHHHHHHHHHHHHHh
Confidence 378999999999999951 1 111 1235899999999998876 37899999999998875
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=133.48 Aligned_cols=123 Identities=24% Similarity=0.325 Sum_probs=85.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
+..+|||||+|.+... .|+.|+.++|... .+..||.++ +.+..+.+.+.+|+.
T Consensus 102 ~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~lIl~~----~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-------------AQQALRRTMEMYS----------QNTRFILSC----NYSSKIIDPIQSRCA 154 (319)
T ss_pred CceEEEEeCcccCCHH-------------HHHHHHHHHhcCC----------CCCeEEEEe----CCccccchhHHHHhh
Confidence 3569999999998654 3557888887421 122344432 355678889999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
+ +.|.+++.+++..++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.++++...
T Consensus 155 ~-~~~~~l~~~ei~~~l~-----------~~~~~~~~--~i~~~al~~l~~~~--------~gd~r~~~~~l~~~~~~-- 210 (319)
T PRK00440 155 V-FRFSPLKKEAVAERLR-----------YIAENEGI--EITDDALEAIYYVS--------EGDMRKAINALQAAAAT-- 210 (319)
T ss_pred e-eeeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHc--
Confidence 5 7999999999988884 23344565 67899999999876 56789998888876531
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. -.||.+.|++.+.
T Consensus 211 ---~---~~it~~~v~~~~~ 224 (319)
T PRK00440 211 ---G---KEVTEEAVYKITG 224 (319)
T ss_pred ---C---CCCCHHHHHHHhC
Confidence 1 1366666655443
|
|
| >KOG0991|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-11 Score=128.41 Aligned_cols=106 Identities=23% Similarity=0.353 Sum_probs=76.0
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
..||++||.|.++. |.|++|...||-.+-+|++ +.+ .+....++..+|+|+.+
T Consensus 114 hKIiILDEADSMT~-------------gAQQAlRRtMEiyS~ttRF----------ala----CN~s~KIiEPIQSRCAi 166 (333)
T KOG0991|consen 114 HKIIILDEADSMTA-------------GAQQALRRTMEIYSNTTRF----------ALA----CNQSEKIIEPIQSRCAI 166 (333)
T ss_pred eeEEEeeccchhhh-------------HHHHHHHHHHHHHcccchh----------hhh----hcchhhhhhhHHhhhHh
Confidence 46999999998874 5899999999976655544 111 12233588889999987
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
. .|..|+..++..-|. ...+.+++ .+++++++.|...| .++.|...+.+...+
T Consensus 167 L-Rysklsd~qiL~Rl~-----------~v~k~Ekv--~yt~dgLeaiifta--------~GDMRQalNnLQst~ 219 (333)
T KOG0991|consen 167 L-RYSKLSDQQILKRLL-----------EVAKAEKV--NYTDDGLEAIIFTA--------QGDMRQALNNLQSTV 219 (333)
T ss_pred h-hhcccCHHHHHHHHH-----------HHHHHhCC--CCCcchHHHhhhhc--------cchHHHHHHHHHHHh
Confidence 4 899999887655442 22334454 78999999999877 567787777666554
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-11 Score=137.41 Aligned_cols=91 Identities=29% Similarity=0.402 Sum_probs=68.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..+|||||+|.+... .|+.|+.++|...-+ ..||+++ +.+..+.+.+++|+.+
T Consensus 103 ~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~~----------~~lIl~~----~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 103 FKIIFLDEADNLTSD-------------AQQALRRTMEMYSQN----------TRFILSC----NYSSKIIDPIQSRCAV 155 (319)
T ss_pred ceEEEEeCcccCCHH-------------HHHHHHHHHhcCCCC----------CeEEEEe----CCccccchhHHHHhhe
Confidence 459999999999654 577899888853211 2234333 3567888999999885
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
++|++++.+++.+++. ..++.+|+ .+++++++.|++.+
T Consensus 156 -~~~~~l~~~ei~~~l~-----------~~~~~~~~--~i~~~al~~l~~~~ 193 (319)
T PRK00440 156 -FRFSPLKKEAVAERLR-----------YIAENEGI--EITDDALEAIYYVS 193 (319)
T ss_pred -eeeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 7999999999988888 34556677 67899999998865
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.5e-11 Score=137.49 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=84.7
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.|++.+.+.+....... + ....+.||+|||+|.++.. .++.||+.+|..
T Consensus 119 ~~I~vd~iR~l~~~l~~~-----------~--~~g~~rVviIDeAd~l~~~-------------aanaLLk~LEEp---- 168 (351)
T PRK09112 119 TAITVDEIRRVGHFLSQT-----------S--GDGNWRIVIIDPADDMNRN-------------AANAILKTLEEP---- 168 (351)
T ss_pred ccCCHHHHHHHHHHhhhc-----------c--ccCCceEEEEEchhhcCHH-------------HHHHHHHHHhcC----
Confidence 457788877655332210 0 1124679999999999876 556899999862
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG 543 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a 543 (1165)
..+.+||... .+|+.+.|.+++|+. .+.|.+|+.+++.++|+. .+....+++++
T Consensus 169 ------p~~~~fiLit----~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~~---------------~~~~~~~~~~~ 222 (351)
T PRK09112 169 ------PARALFILIS----HSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSH---------------LGSSQGSDGEI 222 (351)
T ss_pred ------CCCceEEEEE----CChhhccHHHHhhcc-EEEecCCCHHHHHHHHHH---------------hhcccCCCHHH
Confidence 2344454442 468888999999995 689999999999999851 12222377888
Q ss_pred HHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 544 IQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 544 ~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
++.+++.+ ++..|...++++
T Consensus 223 ~~~i~~~s--------~G~pr~Al~ll~ 242 (351)
T PRK09112 223 TEALLQRS--------KGSVRKALLLLN 242 (351)
T ss_pred HHHHHHHc--------CCCHHHHHHHHh
Confidence 88887766 455666665553
|
|
| >KOG0744|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-11 Score=132.71 Aligned_cols=84 Identities=14% Similarity=0.269 Sum_probs=63.2
Q ss_pred EEEEecchhhhccCCCCC-CCccc-hhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDIS-RAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~-~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
-|+|||++.++..+.+.+ +.+.| .-.|.++||+-+|.-. ...|+++.|+.+. -+.++-+|.-|-++
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK--------~~~NvliL~TSNl----~~siD~AfVDRADi 320 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK--------RYPNVLILATSNL----TDSIDVAFVDRADI 320 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc--------cCCCEEEEeccch----HHHHHHHhhhHhhh
Confidence 578999999998875533 33332 3368899999888521 3467777777432 34588899999999
Q ss_pred eEecCCCCHHHHHHHHhh
Q psy2392 500 RVELDSLSISDFTRIMTS 517 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~ 517 (1165)
+....+++...+++|++.
T Consensus 321 ~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744|consen 321 VFYVGPPTAEAIYEILKS 338 (423)
T ss_pred eeecCCccHHHHHHHHHH
Confidence 999999999999999963
|
|
| >KOG0732|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.1e-11 Score=148.26 Aligned_cols=177 Identities=24% Similarity=0.363 Sum_probs=136.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc-----CCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-----NAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-----~~~fi~l~~se~~~~ 855 (1165)
++|.|.+.++..+.+.+..++....++.+.. ..+|.++||+||||+|||..|+++|..+ ...|+.-++++..++
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~-itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lsk 343 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFN-ITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSK 343 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcc-cCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhcc
Confidence 7899999999999999988776665555332 2237899999999999999999999998 355666777777777
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|+|+. +..++.+|+.|.+.
T Consensus 344 -wvgEa-ERqlrllFeeA~k~----------------------------------------------------------- 362 (1080)
T KOG0732|consen 344 -WVGEA-ERQLRLLFEEAQKT----------------------------------------------------------- 362 (1080)
T ss_pred -ccCcH-HHHHHHHHHHHhcc-----------------------------------------------------------
Confidence 99998 45688887766222
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
T Consensus 363 -------------------------------------------------------------------------------- 362 (1080)
T KOG0732|consen 363 -------------------------------------------------------------------------------- 362 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhh--hc
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPEL--QG 1093 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel--~g 1093 (1165)
++.|||+||||-++.-+++ ..+.-..-+--.||++|.|- -.+..+..|+|+ +.|..+.|+| -|
T Consensus 363 -qPSIIffdeIdGlapvrSs--kqEqih~SIvSTLLaLmdGl--------dsRgqVvvigAT----nRpda~dpaLRRPg 427 (1080)
T KOG0732|consen 363 -QPSIIFFDEIDGLAPVRSS--KQEQIHASIVSTLLALMDGL--------DSRGQVVVIGAT----NRPDAIDPALRRPG 427 (1080)
T ss_pred -CceEEeccccccccccccc--hHHHhhhhHHHHHHHhccCC--------CCCCceEEEccc----CCccccchhhcCCc
Confidence 6789999999999877543 12222223556799999863 234456667765 5899999999 58
Q ss_pred cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1094 RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1094 R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
||.--+.|+-.+.++-.+||.
T Consensus 428 rfdref~f~lp~~~ar~~Il~ 448 (1080)
T KOG0732|consen 428 RFDREFYFPLPDVDARAKILD 448 (1080)
T ss_pred ccceeEeeeCCchHHHHHHHH
Confidence 999888999999999988886
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.5e-10 Score=134.05 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=81.3
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCC--CCCchhhhCCCC
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP--SDLIPELQGRFP 498 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p--~~l~pel~~R~~ 498 (1165)
.++|+|||.++.++ +|..||..|+...++.........-.+|++|++ .-| ..+.++|.-||-
T Consensus 109 ~lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN---~LPE~g~~leAL~DRFl 172 (498)
T PRK13531 109 EIVFLDEIWKAGPA-------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASN---ELPEADSSLEALYDRML 172 (498)
T ss_pred cEEeecccccCCHH-------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC---CCcccCCchHHhHhhEE
Confidence 39999999988877 777999999766665422223333344444432 223 247779999999
Q ss_pred eeEecCCCC-HHHHHHHHhhhhH---h-------HH-HHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC--CccCcc
Q psy2392 499 IRVELDSLS-ISDFTRIMTSTNV---C-------LT-KQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT--ENIGAR 564 (1165)
Q Consensus 499 ~~v~~~~L~-~~~l~~Il~~~~~---~-------l~-~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~--~~~GAR 564 (1165)
+++.+++|+ ++++.++|..... . +. .+... +...--.+.+++...+.|.++........ ....-|
T Consensus 173 iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~-lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR 251 (498)
T PRK13531 173 IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQ-WQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDR 251 (498)
T ss_pred EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHH-HHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcH
Confidence 999999997 5777888863110 0 11 11111 22222345778888888888775322111 124456
Q ss_pred hhHHHHH
Q psy2392 565 RLYTAME 571 (1165)
Q Consensus 565 ~l~~~ie 571 (1165)
+...++.
T Consensus 252 ~~~~l~~ 258 (498)
T PRK13531 252 RWKKAIR 258 (498)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.8e-11 Score=128.60 Aligned_cols=132 Identities=17% Similarity=0.287 Sum_probs=86.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~ 495 (1165)
+..+++||||+.+..... .+..|+.++.... .....++|.++. ..|+. ..|.|.+
T Consensus 91 ~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~--------~~~~~illits~---~~p~~l~~~~~~L~s 148 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIK--------EQGKTLLLISAD---CSPHALSIKLPDLAS 148 (229)
T ss_pred cCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHH--------HcCCcEEEEeCC---CChHHccccchhHHH
Confidence 456999999999864422 2345666665211 112223333322 23444 4499999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|+. ..+.+++|+.+++.+||. +....++ +.++++++++|++.+ ..+.|.|..+++++
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~-----------~~a~~~~--l~l~~~v~~~L~~~~--------~~d~r~l~~~l~~l 207 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQ-----------RNAYQRG--IELSDEVANFLLKRL--------DRDMHTLFDALDLL 207 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------cCCHHHHHHHHHHH
Confidence 875 677999999999999994 1122334 588999999999988 56899999999987
Q ss_pred HHHhhcccCCCeeEEccccccccc
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
. ..+. ..+. .||...|++.+
T Consensus 208 ~-~~~~-~~~~--~it~~~v~~~L 227 (229)
T PRK06893 208 D-KASL-QAQR--KLTIPFVKEIL 227 (229)
T ss_pred H-HHHH-hcCC--CCCHHHHHHHh
Confidence 4 3333 1112 37777776654
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.9e-10 Score=125.10 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=82.1
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC-
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP- 498 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~- 498 (1165)
.++|+|||+|.+..... .|..|..+++... .... .+|.++...........+.|.+|+.
T Consensus 91 ~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~~~~--------~~~~-~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPE-----------WQEALFHLYNRVR--------EAGG-RLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred CCEEEEeChhhhcCChH-----------HHHHHHHHHHHHH--------HcCC-eEEEECCCChHHCCcccHHHHHHHhc
Confidence 46999999999865421 2445665554211 0111 2344433211111122388999984
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..|.+++|+.++...++. . .+...+ +.+++++++.|+... .+..|-|+++++++-. .
T Consensus 151 ~~~i~l~~l~~~e~~~~l~----~-------~~~~~~--~~~~~~~l~~L~~~~--------~gn~r~L~~~l~~~~~-~ 208 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQ----S-------RAARRG--LQLPDEVADYLLRHG--------SRDMGSLMALLDALDR-A 208 (226)
T ss_pred CeeEecCCCCHHHHHHHHH----H-------HHHHcC--CCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHHH-H
Confidence 788999999999988883 1 122234 478999999999853 4678999999988653 3
Q ss_pred hcccCCCeeEEccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~ 597 (1165)
+... ...||.+.+++.+
T Consensus 209 ~~~~---~~~i~~~~~~~~~ 225 (226)
T TIGR03420 209 SLAA---KRKITIPFVKEVL 225 (226)
T ss_pred HHHh---CCCCCHHHHHHHh
Confidence 3221 1357777776543
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.3e-11 Score=117.52 Aligned_cols=154 Identities=64% Similarity=0.957 Sum_probs=145.0
Q ss_pred ccCcceeeeecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2392 616 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVE 695 (1165)
Q Consensus 616 ~~gt~~~aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~~aL~aav~ 695 (1165)
+-+||++++.++.-.+||++.+..+.+.++|-.|.+.|+||.++|+.-...++.+++.++.++..++|.|.+..++++|+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~raave 81 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVE 81 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccchHHHHhhhhhhhhhhhhcCCCCccCccccccccccccccHHHHHHHhhhccCCChHHHHHhh
Q psy2392 696 LAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKS 769 (1165)
Q Consensus 696 LS~ryi~~R~lPDkdlid~a~a~~~~~~~s~~~~~~~~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i~~~~ 769 (1165)
|++.|.+||+|.....|+..+.....+.+++.+++++|++-+..+++++.+++..++.+.+.+.+.+.++....
T Consensus 82 laKdwr~Dk~lr~LEAmllVad~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa~~s 155 (178)
T COG5405 82 LAKDWRTDKYLRKLEAMLLVADKTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREIAEKS 155 (178)
T ss_pred HHHhhhhhhHHHHHhhheeEeCCCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHHHHHH
Confidence 99999999999999998888888888889999999999999999999999999999999998888888875543
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-10 Score=134.99 Aligned_cols=117 Identities=22% Similarity=0.288 Sum_probs=74.3
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
++|+|||.+.... +|..||..|+...++.---.....-.+|++|.. .......+.++|..||-+++
T Consensus 110 lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN-~LPE~g~~leAL~DRFliri 175 (498)
T PRK13531 110 IVFLDEIWKAGPA-------------ILNTLLTAINERRFRNGAHEEKIPMRLLVTASN-ELPEADSSLEALYDRMLIRL 175 (498)
T ss_pred EEeecccccCCHH-------------HHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC-CCcccCCchHHhHhhEEEEE
Confidence 9999999877766 999999999766655311122333344444443 11112346778999999999
Q ss_pred EcCCCC-HHHHHHHHhhhHH---H-------h-HHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1100 ELDSLS-ISDFTRIMTSTNV---C-------L-TKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1100 ~l~~l~-~~~l~~il~~~~~---~-------l-~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+++|+ ++++.++|..... . + ...+.. +..+=-++.++++.+++|..+...
T Consensus 176 ~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~-lq~~v~~V~v~d~v~eyI~~L~~~ 238 (498)
T PRK13531 176 WLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQ-WQKEIGKITLPDHVFELIFQLRQQ 238 (498)
T ss_pred ECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHH-HHHHhcceeCCHHHHHHHHHHHHH
Confidence 999997 6788999863110 0 1 111111 122223458899999999988764
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.8e-10 Score=123.13 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=57.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeecee-----e-cCceEEEEEeCCccc-CCCCCCch
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI-----I-KTDHILFIASGAFHL-AKPSDLIP 491 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~-----~-~t~~ilfI~~gaf~~-~~p~~l~p 491 (1165)
++++++||||+++.+. +|..||.++|.+.+....+. + ...+..+|+|.+-.. .--..+.+
T Consensus 105 ~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 105 EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 5689999999998766 78899999987765542210 1 113445666643210 00124678
Q ss_pred hhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 492 ELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+|..|| ..+.+..++.++..+|+.
T Consensus 172 aL~~R~-~~i~i~~P~~~~e~~Il~ 195 (262)
T TIGR02640 172 ALLDRL-ITIFMDYPDIDTETAILR 195 (262)
T ss_pred HHHhhc-EEEECCCCCHHHHHHHHH
Confidence 899998 567999999999999985
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-10 Score=129.32 Aligned_cols=97 Identities=20% Similarity=0.330 Sum_probs=59.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcc--------cCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH--------LAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~--------~~~p~~l~ 490 (1165)
-+||+||||+|-+.....+ .|-..+|.. ...|++.|+ +.. ...|..+.
T Consensus 278 vpGVLFIDEvHmLDiEcFs-------------fLnralEs~----------~sPiiIlAT-NRg~~~irGt~~~sphGiP 333 (398)
T PF06068_consen 278 VPGVLFIDEVHMLDIECFS-------------FLNRALESE----------LSPIIILAT-NRGITKIRGTDIISPHGIP 333 (398)
T ss_dssp EE-EEEEESGGGSBHHHHH-------------HHHHHHTST----------T--EEEEEE-S-SEEE-BTTS-EEETT--
T ss_pred ecceEEecchhhccHHHHH-------------HHHHHhcCC----------CCcEEEEec-CceeeeccCccCcCCCCCC
Confidence 4789999999998765332 455566642 233444333 322 23577788
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
..|+.|+-+ |...|++.+|+.+|+. -..+++++ .++++|++.|++++.+
T Consensus 334 ~DlLDRllI-I~t~py~~~ei~~Il~-----------iR~~~E~v--~i~~~al~~L~~ig~~ 382 (398)
T PF06068_consen 334 LDLLDRLLI-IRTKPYSEEEIKQILK-----------IRAKEEDV--EISEDALDLLTKIGVE 382 (398)
T ss_dssp HHHHTTEEE-EEE----HHHHHHHHH-----------HHHHHCT----B-HHHHHHHHHHHHH
T ss_pred cchHhhcEE-EECCCCCHHHHHHHHH-----------hhhhhhcC--cCCHHHHHHHHHHhhh
Confidence 899999866 5899999999999994 22455666 7889999999999965
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-10 Score=143.22 Aligned_cols=157 Identities=17% Similarity=0.281 Sum_probs=93.2
Q ss_pred HhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-------eecC----ceEEEEEeCCcc
Q psy2392 414 INNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-------IIKT----DHILFIASGAFH 482 (1165)
Q Consensus 414 ~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-------~~~t----~~ilfI~~gaf~ 482 (1165)
+..| +.|++||||++.+.+. +|..|+..++.+.+....+ .+.+ -++.+|++|+..
T Consensus 213 L~~A-ngGtL~Ldei~~L~~~-------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~ 278 (608)
T TIGR00764 213 IHRA-HKGVLYIDEIKTMPLE-------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD 278 (608)
T ss_pred eEEC-CCCEEEEEChHhCCHH-------------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH
Confidence 3344 6899999999999754 6778998887655443111 1111 245678886521
Q ss_pred cCCCCCCchhhhCCCC---eeEecCCC---CHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccc
Q psy2392 483 LAKPSDLIPELQGRFP---IRVELDSL---SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE 556 (1165)
Q Consensus 483 ~~~p~~l~pel~~R~~---~~v~~~~L---~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~ 556 (1165)
.-..+.|+|+.||+ +.+.|+.. +.+...+++. .+ .+.++.+|....|+++|+++|++.+.+.-.
T Consensus 279 --~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~-----~i---~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag 348 (608)
T TIGR00764 279 --DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ-----FV---AQEVKKDGRIPHFTRDAVEEIVREAQRRAG 348 (608)
T ss_pred --HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH-----HH---HHHHHHhCCCCcCCHHHHHHHHHHHHHHHh
Confidence 12468999999999 88877653 5556555542 22 222344555558999999999987765210
Q ss_pred cCC--ccCcchhHHHHHHHHHHhhcccCC-CeeEEcccccccccc
Q psy2392 557 RTE--NIGARRLYTAMEKLLEEVSFNSNN-ISLLVDADYVNSRLG 598 (1165)
Q Consensus 557 ~~~--~~GAR~l~~~ie~~l~~~~~~~~~-~~~~i~~~~v~~~~~ 598 (1165)
... ..-.|.|.+++... .+.+.. ....|+.+.|++.++
T Consensus 349 ~r~~lsl~~R~L~~llR~A----~~iA~~~~~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 349 RKDHLTLRLRELGGLVRAA----GDIAKSSGKVYVTAEHVLKAKK 389 (608)
T ss_pred cccccCCCHHHHHHHHHHH----HHHHHhcCCceecHHHHHHHHH
Confidence 000 01134555555443 221211 225688888876544
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-09 Score=125.84 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=65.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC-
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~- 1095 (1165)
+..||+|||+|.+.+... .+-..|+.+.+- ......++.+|+.+.- ..-+..+.|.+.+||
T Consensus 129 ~~~vlvIDE~d~L~~~~~----------~~L~~l~~~~~~-------~~~~~~~v~lI~i~n~-~~~~~~l~~~~~s~~~ 190 (365)
T TIGR02928 129 DSLIIVLDEIDYLVGDDD----------DLLYQLSRARSN-------GDLDNAKVGVIGISND-LKFRENLDPRVKSSLC 190 (365)
T ss_pred CeEEEEECchhhhccCCc----------HHHHhHhccccc-------cCCCCCeEEEEEEECC-cchHhhcCHHHhccCC
Confidence 356899999999983311 122233333111 1223356777777641 111236788889998
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+..+.|+|++.+++..||+ ..++. . + ..+ .|++++++.+++++..
T Consensus 191 ~~~i~f~p~~~~e~~~il~----~r~~~--~-~-~~~---~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 191 EEEIIFPPYDAEELRDILE----NRAEK--A-F-YDG---VLDDGVIPLCAALAAQ 235 (365)
T ss_pred cceeeeCCCCHHHHHHHHH----HHHHh--h-c-cCC---CCChhHHHHHHHHHHH
Confidence 4678999999999999999 11111 0 1 112 4889999988887653
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.2e-10 Score=132.48 Aligned_cols=298 Identities=19% Similarity=0.301 Sum_probs=135.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVGYV 858 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~Gyv 858 (1165)
+-++||.+|.++.-..+..- +.+-. ..+.+||.||||||||.||-++|+++| .||+.+++|++.+. -+
T Consensus 24 ~GlVGQ~~AReAagiiv~mI--k~~K~-------aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~-e~ 93 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMI--KEGKI-------AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSS-EV 93 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHH--HTT---------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BT-TC
T ss_pred ccccChHHHHHHHHHHHHHH--hcccc-------cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeec-cc
Confidence 57899999988876655432 21111 137899999999999999999999996 99999999999664 11
Q ss_pred ccChhhHHHHHHHHHHhh-hhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCc----------ccchhh----
Q psy2392 859 GRDVDTIIRDLIDISIKQ-TREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE----------NNNIST---- 923 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~-~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~----------~~~~~~---- 923 (1165)
.....+.+.|+++.-. .++ +.+.-+..|+++-..+ ..++-+ +... .++..+
T Consensus 94 --kKTE~L~qa~RraIGvrIkE---------~~eV~EGeVvei~~~~--~~~~~~-~~~~~~~~~i~LkT~~~~~~l~l~ 159 (398)
T PF06068_consen 94 --KKTEALTQAFRRAIGVRIKE---------EKEVYEGEVVEIKIEE--AENPLN-YGKTIKHGKITLKTTDMEKTLKLG 159 (398)
T ss_dssp ---HHHHHHHHHHCSEEEEEEE---------EECEEEEEEEEEEE-----E-TTS--SSSS-EEEEEEEETTCEEEEEE-
T ss_pred --CchHHHHHHHHHhheEEEEE---------EEEEEEEEEEEEEEee--ccCccc-cCCcceEEEEEEEEcCCceEecCC
Confidence 1123456665554221 000 0000000001110000 011111 2211 111111
Q ss_pred HHHHHHhhccCCCCCeEEEEEecCCC----------C-cccc-----cCCc--------------chHHHHH---HHHHH
Q psy2392 924 RQIFRKRLREGALDNKEIEIELNDTG----------P-HMEI-----MSPP--------------GMEEMTA---QIKTM 970 (1165)
Q Consensus 924 r~~~~~~l~~g~ld~r~v~i~~~~~~----------~-~~~~-----~~~~--------------~~~~~~~---~~~~~ 970 (1165)
..-+.++.+++---+-.|+|+-.... . ..++ .+.| .+-++.- ..+++
T Consensus 160 ~~i~~~l~kekV~~GDVI~Id~~tG~V~k~Grs~~~~~~~D~~~~~~V~~P~Gev~K~KEiv~~vTLHDlD~~Nsr~q~~ 239 (398)
T PF06068_consen 160 PKIYEQLQKEKVRVGDVIYIDKNTGRVKKVGRSDSYAKDYDLEATKFVPCPKGEVHKRKEIVQTVTLHDLDVANSRPQDF 239 (398)
T ss_dssp CHHHHHHHHTT--TTCEEEEETTTTEEEEEEEECCCS-TTSECCTTEE---SS-SEEEEEEEEEEEHHHHHHHCC-----
T ss_pred HHHHHHHHHhCCccCcEEEEECCCCeEEEEecccchhhccccccceEeeCCCCcceEEEEEEEEEeHHHhhhhhhccccH
Confidence 11223333333333345666654311 0 0111 0111 2223321 12333
Q ss_pred HHhhCC-CCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhh---cCCeeeehhhhhhhccCCCCCCCCccchhh
Q psy2392 971 FSVIGN-HRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE---QNGIIFLDEIDKITTRSSQNNNTDISRAGV 1046 (1165)
Q Consensus 971 ~~~~~~-~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~---~~gIvfiDEiDki~~~~~~~~~~~~~~~gv 1046 (1165)
++.+++ .+.++..||-+ .|+- -++.+.+-++... -+|++||||+|-+--.+.+
T Consensus 240 lslf~~~~~~~~~EI~~e-lR~e-----------Ink~V~~wieegkAelvpGVLFIDEvHmLDiEcFs----------- 296 (398)
T PF06068_consen 240 LSLFGQLFKGDTGEITDE-LREE-----------INKKVNKWIEEGKAELVPGVLFIDEVHMLDIECFS----------- 296 (398)
T ss_dssp ----------------HH-HHHH-----------HHHHHHHHHHCTSEEEEE-EEEEESGGGSBHHHHH-----------
T ss_pred HHHHHhhcCCCcccchHH-HHHH-----------HhHHHHHHHhcCceEEecceEEecchhhccHHHHH-----------
Confidence 333311 11223333311 1110 0122233333322 2589999999988766432
Q ss_pred hhhccccccCccceeeeeeccCceEEEEecCCCC--------CCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHH
Q psy2392 1047 QRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH--------LAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNV 1118 (1165)
Q Consensus 1047 q~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~--------~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~ 1118 (1165)
.|-..+|..... .+|.|.+.- ...|+.+-..|+.||-| |...|++++|+.+||+
T Consensus 297 --fLnralEs~~sP-----------iiIlATNRg~~~irGt~~~sphGiP~DlLDRllI-I~t~py~~~ei~~Il~---- 358 (398)
T PF06068_consen 297 --FLNRALESELSP-----------IIILATNRGITKIRGTDIISPHGIPLDLLDRLLI-IRTKPYSEEEIKQILK---- 358 (398)
T ss_dssp --HHHHHHTSTT-------------EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEE-EEE----HHHHHHHHH----
T ss_pred --HHHHHhcCCCCc-----------EEEEecCceeeeccCccCcCCCCCCcchHhhcEE-EECCCCCHHHHHHHHH----
Confidence 455666643222 223332221 23577888899999987 5899999999999999
Q ss_pred HhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1119 CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1119 ~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
--++.|+| .++++|++.|++++.+.
T Consensus 359 -------iR~~~E~v--~i~~~al~~L~~ig~~~ 383 (398)
T PF06068_consen 359 -------IRAKEEDV--EISEDALDLLTKIGVET 383 (398)
T ss_dssp -------HHHHHCT----B-HHHHHHHHHHHHHS
T ss_pred -------hhhhhhcC--cCCHHHHHHHHHHhhhc
Confidence 44667888 77899999999998753
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=133.88 Aligned_cols=100 Identities=22% Similarity=0.349 Sum_probs=71.5
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe-
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI- 1097 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i- 1097 (1165)
.||+|||||.|.+. .|..|+.+++-.. .....+.+|+... ...-|..|.|.+++||..
T Consensus 871 ~IIILDEID~L~kK-------------~QDVLYnLFR~~~-------~s~SKLiLIGISN-dlDLperLdPRLRSRLg~e 929 (1164)
T PTZ00112 871 SILIIDEIDYLITK-------------TQKVLFTLFDWPT-------KINSKLVLIAISN-TMDLPERLIPRCRSRLAFG 929 (1164)
T ss_pred eEEEeehHhhhCcc-------------HHHHHHHHHHHhh-------ccCCeEEEEEecC-chhcchhhhhhhhhccccc
Confidence 48999999999875 4667877776421 1234567777654 234566788999999865
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
++.|+|++.++|..||..- +.. ..+ .|+++|++.+|+.++..
T Consensus 930 eIvF~PYTaEQL~dILk~R----Ae~------A~g---VLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 930 RLVFSPYKGDEIEKIIKER----LEN------CKE---IIDHTAIQLCARKVANV 971 (1164)
T ss_pred cccCCCCCHHHHHHHHHHH----HHh------CCC---CCCHHHHHHHHHhhhhc
Confidence 3789999999999999911 111 123 48999999999977754
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.6e-10 Score=131.37 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=66.3
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
.-||+|||+|.+... .++.||+.+|... .+.+||... .+|+.+.|.+++||.
T Consensus 142 ~rVviIDeAd~l~~~-------------aanaLLk~LEEpp----------~~~~fiLit----~~~~~llptIrSRc~- 193 (351)
T PRK09112 142 WRIVIIDPADDMNRN-------------AANAILKTLEEPP----------ARALFILIS----HSSGRLLPTIRSRCQ- 193 (351)
T ss_pred ceEEEEEchhhcCHH-------------HHHHHHHHHhcCC----------CCceEEEEE----CChhhccHHHHhhcc-
Confidence 349999999999876 6789999999632 233444432 468899999999995
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|.+|+.+++.++|+. . |....|+++++..|+..|.
T Consensus 194 ~i~l~pl~~~~~~~~L~~-----------~----~~~~~~~~~~~~~i~~~s~ 231 (351)
T PRK09112 194 PISLKPLDDDELKKALSH-----------L----GSSQGSDGEITEALLQRSK 231 (351)
T ss_pred EEEecCCCHHHHHHHHHH-----------h----hcccCCCHHHHHHHHHHcC
Confidence 689999999999999982 1 1212266777777766543
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-10 Score=131.29 Aligned_cols=114 Identities=18% Similarity=0.341 Sum_probs=77.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeeccC--ceEEEEecCCCCCCCCC--CCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIKT--DHILFIASGAFHLAKPS--DLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~~t--~~ilfI~~gaf~~~~p~--dl~pel 1091 (1165)
++|++|+|||+.+... +|..|+..||...++ ++.|...+ ..+.+|+++ +|. .+.+.|
T Consensus 128 ~~GiL~lDEInrl~~~-------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~-----NP~e~~l~~aL 189 (334)
T PRK13407 128 NRGYLYIDEVNLLEDH-------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSG-----NPEEGELRPQL 189 (334)
T ss_pred CCCeEEecChHhCCHH-------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecC-----CcccCCCCHHH
Confidence 5799999999999776 899999999876543 34443222 234444443 342 478899
Q ss_pred hccCCeEEEcCCCCH-HHHHHHHhhhHH------Hh--------------HHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1092 QGRFPIRVELDSLSI-SDFTRIMTSTNV------CL--------------TKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1092 ~gR~~i~v~l~~l~~-~~l~~il~~~~~------~l--------------~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
..||.+.|.+.+... ++-.+|+..... .. +...++.+ . .+.++|+.+++|+.++.
T Consensus 190 ldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~--~--~V~v~~~~~~yi~~l~~ 265 (334)
T PRK13407 190 LDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARL--P--QLKTPNTVLHDCAALCI 265 (334)
T ss_pred HhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhc--C--CcccCHHHHHHHHHHHH
Confidence 999999999998877 777777763211 00 11111221 2 35789999999999987
Q ss_pred cc
Q psy2392 1151 CI 1152 (1165)
Q Consensus 1151 ~~ 1152 (1165)
..
T Consensus 266 ~~ 267 (334)
T PRK13407 266 AL 267 (334)
T ss_pred HH
Confidence 64
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.8e-10 Score=122.81 Aligned_cols=132 Identities=16% Similarity=0.252 Sum_probs=85.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~ 495 (1165)
+..+|+|||||.+..... -|..|+.+++... ....-+|+++. ..|+. +.|.|++
T Consensus 93 ~~dlLiIDDi~~l~~~~~-----------~~~~lf~l~n~~~---------~~~~~vI~ts~---~~p~~l~~~~~dL~S 149 (233)
T PRK08727 93 GRSLVALDGLESIAGQRE-----------DEVALFDFHNRAR---------AAGITLLYTAR---QMPDGLALVLPDLRS 149 (233)
T ss_pred cCCEEEEeCcccccCChH-----------HHHHHHHHHHHHH---------HcCCeEEEECC---CChhhhhhhhHHHHH
Confidence 356999999998874322 2335555444211 11111334433 24554 5799999
Q ss_pred CC--CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RF--PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~--~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|| ...+.|++|+.+++.+||. .....+| +.++++++++|++.+ ...+|.+.++++++
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~-----------~~a~~~~--l~l~~e~~~~La~~~--------~rd~r~~l~~L~~l 208 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLR-----------ERAQRRG--LALDEAAIDWLLTHG--------ERELAGLVALLDRL 208 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 96 5778999999999999994 1112234 588999999999987 46789999999987
Q ss_pred HHHhhcccCCCeeEEcccccccccc
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
....... + ..||...+++.++
T Consensus 209 ~~~~~~~--~--~~it~~~~~~~l~ 229 (233)
T PRK08727 209 DRESLAA--K--RRVTVPFLRRVLE 229 (233)
T ss_pred HHHHHHh--C--CCCCHHHHHHHHh
Confidence 6433221 1 2467777766553
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.5e-10 Score=127.46 Aligned_cols=130 Identities=19% Similarity=0.250 Sum_probs=90.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..||.+++.+.+....+ .....++-+|++.+... .....|.++|.
T Consensus 93 ~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 93 DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 5899999999999876 7779999998655432111 11234566777754321 12345889999
Q ss_pred CCCC-eeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCe--eEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 495 GRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~--l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
.||. ..|.++||. .+|+..++ ..++.++.. ..|.. ..|++++++.|..+.. .+..|-|+++
T Consensus 160 ~rl~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~---~~~~~~~~~ls~~a~~~L~~y~W-------PGNvrEL~n~ 225 (329)
T TIGR02974 160 DRLAFDVITLPPLRERQEDIMLLA----EHFAIRMAR---ELGLPLFPGFTPQAREQLLEYHW-------PGNVRELKNV 225 (329)
T ss_pred HHhcchhcCCCchhhhhhhHHHHH----HHHHHHHHH---HhCCCCCCCcCHHHHHHHHhCCC-------CchHHHHHHH
Confidence 9994 578999999 57877776 344444332 23444 4799999999987553 4678999999
Q ss_pred HHHHHH
Q psy2392 570 MEKLLE 575 (1165)
Q Consensus 570 ie~~l~ 575 (1165)
|++++.
T Consensus 226 i~~~~~ 231 (329)
T TIGR02974 226 VERSVY 231 (329)
T ss_pred HHHHHH
Confidence 999875
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=121.13 Aligned_cols=85 Identities=16% Similarity=0.113 Sum_probs=57.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee----c--cCceEEEEecCCCCC-CCCCCCch
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI----I--KTDHILFIASGAFHL-AKPSDLIP 1089 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~----~--~t~~ilfI~~gaf~~-~~p~dl~p 1089 (1165)
+.++++|||||++... +|..||.++|...+...-+. + ...+..+|++.+-.. .--..+.+
T Consensus 105 ~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 105 EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 5789999999997765 89999999997665432110 0 112444566543110 00124578
Q ss_pred hhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1090 ELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1090 el~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
+|..|| ..+.+.-++.++..+|++.
T Consensus 172 aL~~R~-~~i~i~~P~~~~e~~Il~~ 196 (262)
T TIGR02640 172 ALLDRL-ITIFMDYPDIDTETAILRA 196 (262)
T ss_pred HHHhhc-EEEECCCCCHHHHHHHHHH
Confidence 899998 5679999999999999983
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.8e-10 Score=130.24 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=77.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeec--cCceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~--~t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
+.|++|+|||+.+... +|..||..|+...++ .+.|.. ....+++|++.+-. ...|.|+|..
T Consensus 144 ~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~---eg~l~~~Lld 207 (350)
T CHL00081 144 NRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPE---EGELRPQLLD 207 (350)
T ss_pred CCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc---cCCCCHHHHH
Confidence 6799999999999876 899999999764433 223321 12234455543311 1248999999
Q ss_pred cCCeEEEcCCCC-HHHHHHHHhhhHH------HhHHH--------HHHHHh--hcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1094 RFPIRVELDSLS-ISDFTRIMTSTNV------CLTKQ--------YEALLA--TEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1094 R~~i~v~l~~l~-~~~l~~il~~~~~------~l~~q--------~~~l~~--~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
||.+.+.+..++ .++-.+||+.... ...++ ...++. ..=-++.++++.+++|+.++...
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~ 283 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSEL 283 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHH
Confidence 999999999998 4777888874211 00111 011111 11123578999999999999874
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=136.78 Aligned_cols=118 Identities=18% Similarity=0.253 Sum_probs=76.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeecc--CceEEEEecCCCCCCCC--CCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIK--TDHILFIASGAFHLAKP--SDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~~--t~~ilfI~~gaf~~~~p--~dl~pel 1091 (1165)
..||+|||||+++... +|..||..+|...+. ++.|... ..++.+|++. +| ..|.++|
T Consensus 126 ~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~-----np~eg~l~~~L 187 (633)
T TIGR02442 126 HRGILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTM-----NPEEGDLRPQL 187 (633)
T ss_pred CCCeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEec-----CCCCCCCCHHH
Confidence 6799999999999887 899999999865432 3333222 2345666653 34 3588999
Q ss_pred hccCCeEEEcCCCC-HHHHHHHHhhhHH----------------HhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPIRVELDSLS-ISDFTRIMTSTNV----------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i~v~l~~l~-~~~l~~il~~~~~----------------~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..||+++|.+.++. .++..+|+..-.. ..+..+.......--.+.+++++++.|+.++...
T Consensus 188 ~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~ 265 (633)
T TIGR02442 188 LDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEF 265 (633)
T ss_pred HhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999998875 4556666652100 0111110111111112478999999999999876
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.2e-10 Score=130.17 Aligned_cols=68 Identities=37% Similarity=0.572 Sum_probs=59.1
Q ss_pred HHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 173 VIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 173 ~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
....+...+...++|+++++..+..++... +++||.||||||||++|+.+|+.++.+|++++++
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~----------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAG----------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcC----------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 445567778888999999998888887654 8999999999999999999999999999999998
Q ss_pred cccc
Q psy2392 253 KFTE 256 (1165)
Q Consensus 253 ~~~~ 256 (1165)
....
T Consensus 78 ~~l~ 81 (329)
T COG0714 78 PDLL 81 (329)
T ss_pred CCCC
Confidence 7544
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.4e-09 Score=124.24 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC-C
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF-P 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~-~ 1096 (1165)
..||+|||+|.+..... ..+-..|+..++.. ...++.+|+.|.-. .-+..+.|.+.+|+ +
T Consensus 139 ~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~~---------~~~~v~vI~i~~~~-~~~~~l~~~~~s~~~~ 199 (394)
T PRK00411 139 VLIVALDDINYLFEKEG---------NDVLYSLLRAHEEY---------PGARIGVIGISSDL-TFLYILDPRVKSVFRP 199 (394)
T ss_pred EEEEEECCHhHhhccCC---------chHHHHHHHhhhcc---------CCCeEEEEEEECCc-chhhhcCHHHHhcCCc
Confidence 45899999999983211 01334444444321 12367788877621 12234678888887 5
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.++.|+|++.+++.+||... .+ .-+. .-.|++++++.|++.+..
T Consensus 200 ~~i~f~py~~~e~~~il~~r----~~---~~~~----~~~~~~~~l~~i~~~~~~ 243 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDR----VE---EGFY----PGVVDDEVLDLIADLTAR 243 (394)
T ss_pred ceeecCCCCHHHHHHHHHHH----HH---hhcc----cCCCCHhHHHHHHHHHHH
Confidence 67899999999999999822 11 1011 124899999999988754
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=133.90 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=91.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceee-eecee--ecCceEEEEEeCCcccCCC--CCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGI--IKTDHILFIASGAFHLAKP--SDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~-~~~~~--~~t~~ilfI~~gaf~~~~p--~~l~pel 493 (1165)
..||+|||||+++.+. +|..||..+|.+.+. ++.|. ....++.+|++. +| ..|.++|
T Consensus 126 ~~GiL~lDEi~~l~~~-------------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~-----np~eg~l~~~L 187 (633)
T TIGR02442 126 HRGILYIDEVNLLDDH-------------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTM-----NPEEGDLRPQL 187 (633)
T ss_pred CCCeEEeChhhhCCHH-------------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEec-----CCCCCCCCHHH
Confidence 5789999999999876 777999999865432 22221 122456677763 34 3588999
Q ss_pred hCCCCeeEecCCCC-HHHHHHHHhhhhH------h----------HHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccc
Q psy2392 494 QGRFPIRVELDSLS-ISDFTRIMTSTNV------C----------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE 556 (1165)
Q Consensus 494 ~~R~~~~v~~~~L~-~~~l~~Il~~~~~------~----------l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~ 556 (1165)
+.||++.|.+.++. .++..+|+..... . .+..........--.+.+++++++.|+..+...
T Consensus 188 ~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~-- 265 (633)
T TIGR02442 188 LDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEF-- 265 (633)
T ss_pred HhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh--
Confidence 99999999998875 4555666642100 0 000000011111113577999999999999875
Q ss_pred cCCcc-CcchhHHHHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 557 RTENI-GARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 557 ~~~~~-GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
++ |.|....++.-.-.-... ... -.|+.+.|++.+
T Consensus 266 ---~i~s~Ra~i~~~r~Ara~AaL--~gr-~~V~~~Dv~~A~ 301 (633)
T TIGR02442 266 ---GVDGHRADIVMARAARALAAL--DGR-RRVTAEDVREAA 301 (633)
T ss_pred ---CCCCccHHHHHHHHHHHHHHH--cCC-CcCCHHHHHHHH
Confidence 34 567766655433222111 111 245666665543
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-10 Score=130.80 Aligned_cols=207 Identities=20% Similarity=0.311 Sum_probs=142.1
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc----CCCeEEEecCCcccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEATKFTEV 855 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l----~~~fi~l~~se~~~~ 855 (1165)
.++++|....-+.+.+.+... . +.-.++|++|+||+||+.+|++|.... ..||+.+||+.|.+.
T Consensus 77 ~~~LIG~~~~~~~~~eqik~~------a------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en 144 (403)
T COG1221 77 LDDLIGESPSLQELREQIKAY------A------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN 144 (403)
T ss_pred hhhhhccCHHHHHHHHHHHhh------C------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC
Confidence 367889988888877777641 1 113689999999999999999998554 579999999997654
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
....++|+.. ++.|+++... ++|.
T Consensus 145 --------~~~~eLFG~~-------------------------------------kGaftGa~~~-----------k~Gl 168 (403)
T COG1221 145 --------LQEAELFGHE-------------------------------------KGAFTGAQGG-----------KAGL 168 (403)
T ss_pred --------HHHHHHhccc-------------------------------------cceeecccCC-----------cCch
Confidence 3455577765 2334432110 1222
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
+ +.|
T Consensus 169 f------------------------------------------------------------------------e~A---- 172 (403)
T COG1221 169 F------------------------------------------------------------------------EQA---- 172 (403)
T ss_pred h------------------------------------------------------------------------eec----
Confidence 2 333
Q ss_pred hcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--eccCceEEEEecCCCCCCCCCCCch--hh
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHLAKPSDLIP--EL 1091 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--~~~t~~ilfI~~gaf~~~~p~dl~p--el 1091 (1165)
+.|++|+|||..+... +|.-||.++|.+.+. +.| .....++.+|||.+- .-++.++. .|
T Consensus 173 -~GGtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~-rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl 235 (403)
T COG1221 173 -NGGTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYR-RVGGSQPRPVDVRLICATTE--DLEEAVLAGADL 235 (403)
T ss_pred -CCCEEehhhhhhCCHh-------------HHHHHHHHHHcCceE-ecCCCCCcCCCceeeecccc--CHHHHHHhhcch
Confidence 7899999999999876 899999999976655 344 355677889999762 12234555 77
Q ss_pred hc-cCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceE-eCHHHHHHHHHHHhcc
Q psy2392 1092 QG-RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE-FVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~g-R~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~-~~~~ai~~ia~~a~~~ 1152 (1165)
.. |.+++|+++||-+. ...|+--.++ .+++++.-+ |..+. ++++|++.+-.+.+..
T Consensus 236 ~~rl~~~~I~LPpLrER-~~Di~~L~e~-Fl~~~~~~l---~~~~~~~~~~a~~~L~~y~~pG 293 (403)
T COG1221 236 TRRLNILTITLPPLRER-KEDILLLAEH-FLKSEARRL---GLPLSVDSPEALRALLAYDWPG 293 (403)
T ss_pred hhhhcCceecCCChhhc-hhhHHHHHHH-HHHHHHHHc---CCCCCCCCHHHHHHHHhCCCCC
Confidence 77 79999999999987 6666654433 344444333 44333 3358999998776666
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=133.83 Aligned_cols=130 Identities=18% Similarity=0.286 Sum_probs=90.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..|+.+++.+.+....+ .....++-+|++.+... .....|.++|.
T Consensus 290 ~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~ 356 (534)
T TIGR01817 290 DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLY 356 (534)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHH
Confidence 5799999999999876 7779999998654332111 11122455777754321 12345889999
Q ss_pred CCCCe-eEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 495 GRFPI-RVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 495 ~R~~~-~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
.||.. .|.++||. .+|+..++ ..++.++.. ..|..+.|++++++.|..+.. .+..|-|+++++
T Consensus 357 ~rl~~~~i~lPpLreR~eDi~~L~----~~~l~~~~~---~~~~~~~~s~~a~~~L~~~~W-------PGNvrEL~~v~~ 422 (534)
T TIGR01817 357 YRINVVPIFLPPLRERREDIPLLA----EAFLEKFNR---ENGRPLTITPSAIRVLMSCKW-------PGNVRELENCLE 422 (534)
T ss_pred HHhcCCeeeCCCcccccccHHHHH----HHHHHHHHH---HcCCCCCCCHHHHHHHHhCCC-------CChHHHHHHHHH
Confidence 99864 68899998 68888887 345554433 234457899999999987553 467899999999
Q ss_pred HHHH
Q psy2392 572 KLLE 575 (1165)
Q Consensus 572 ~~l~ 575 (1165)
+++.
T Consensus 423 ~a~~ 426 (534)
T TIGR01817 423 RTAT 426 (534)
T ss_pred HHHH
Confidence 9874
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-10 Score=122.25 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=65.7
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---CchhhhccC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGRF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~gR~ 1095 (1165)
-++||||||.+..... ..+.++..+...+|. .++-+|.+|. ..|.. +.|.|.+||
T Consensus 99 dlliiDdi~~~~~~~~-------~~~~lf~l~n~~~e~------------g~~~li~ts~---~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 99 SLVCIDNIECIAGDEL-------WEMAIFDLYNRILES------------GRTRLLITGD---RPPRQLNLGLPDLASRL 156 (235)
T ss_pred CEEEEeChhhhcCCHH-------HHHHHHHHHHHHHHc------------CCCeEEEeCC---CChHHcCcccHHHHHHH
Confidence 4899999999976421 122244444455552 2222445554 23433 579999999
Q ss_pred C--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1096 P--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1096 ~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
. ..++|++++.+++.+||+ .....+|+ .++++++++|++.+..
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~-----------~~a~~~~~--~l~~~v~~~L~~~~~~ 201 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQ-----------LRARLRGF--ELPEDVGRFLLKRLDR 201 (235)
T ss_pred hCCceeeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhhcC
Confidence 4 557999999999999988 22233464 7899999999987753
|
|
| >COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.2e-10 Score=112.58 Aligned_cols=154 Identities=64% Similarity=0.957 Sum_probs=144.7
Q ss_pred cccceeeeeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2392 18 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVE 97 (1165)
Q Consensus 18 ~~~~~~laLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ 97 (1165)
|-+|||++..++.-.+||+.....+.+.+-|-.|-.-|+||..+|+.-...+++++++.+.++..++|.|.+..++++|+
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g~L~raave 81 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVE 81 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 56899999999999999999999999999999999999999878998999999999999999999999999999999999
Q ss_pred HHHhhcCCCCchhHHHHHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhccccCchhhhhhh
Q psy2392 98 LAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKS 171 (1165)
Q Consensus 98 ls~rYi~~r~lPDkalld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~t~l~~~~i~~~~ 171 (1165)
|++.|.+||+|....++...+.+.....+++.+++++|++.+.++++.+.|+...|++|.+.+.+..++|.+..
T Consensus 82 laKdwr~Dk~lr~LEAmllVad~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~lsA~eIa~~s 155 (178)
T COG5405 82 LAKDWRTDKYLRKLEAMLLVADKTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELSAREIAEKS 155 (178)
T ss_pred HHHhhhhhhHHHHHhhheeEeCCCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCCHHHHHHHH
Confidence 99999999999999888888888888888999999999999999999999999999999999998888887543
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=122.01 Aligned_cols=95 Identities=16% Similarity=0.287 Sum_probs=68.8
Q ss_pred ccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCc
Q psy2392 380 RKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT 459 (1165)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~ 459 (1165)
+++...|++.+++.+.......-+. ..+.|++||++|+++.. .++.||+.+|..
T Consensus 98 ~~~~~~I~id~ir~i~~~l~~~p~~-------------~~~kVvII~~ae~m~~~-------------aaNaLLK~LEEP 151 (314)
T PRK07399 98 RKAPPQIRLEQIREIKRFLSRPPLE-------------APRKVVVIEDAETMNEA-------------AANALLKTLEEP 151 (314)
T ss_pred ccccccCcHHHHHHHHHHHccCccc-------------CCceEEEEEchhhcCHH-------------HHHHHHHHHhCC
Confidence 3444567777877765443322221 25789999999999866 566999999962
Q ss_pred eeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 460 TVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 460 ~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
. +.+||... ++|+.+.|.+++|+.+ +.|.+++.+++.++|.
T Consensus 152 p-----------~~~fILi~----~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~ 192 (314)
T PRK07399 152 G-----------NGTLILIA----PSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLK 192 (314)
T ss_pred C-----------CCeEEEEE----CChHhCcHHHHhhceE-EecCCCCHHHHHHHHH
Confidence 1 22454442 4788999999999865 6999999999999985
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-09 Score=118.31 Aligned_cols=82 Identities=23% Similarity=0.449 Sum_probs=58.9
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCcccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVGY 857 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~Gy 857 (1165)
.+-++||.+|.++.-..+..- +.|-. ..+++|+.||||+|||.||-.+|+++| .||+.+++|++.+. -
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mi--k~gk~-------aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~-E 107 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMI--KQGKM-------AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSL-E 107 (450)
T ss_pred CCcccchHHHHHhhhHHHHHH--HhCcc-------cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeee-c
Confidence 467899999987755444321 22211 147999999999999999999999995 89999999999653 1
Q ss_pred cccChhhHHHHHHHHH
Q psy2392 858 VGRDVDTIIRDLIDIS 873 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a 873 (1165)
+.. ...+.+.|+++
T Consensus 108 ~kK--TE~L~qa~Rra 121 (450)
T COG1224 108 VKK--TEALTQALRRA 121 (450)
T ss_pred ccH--HHHHHHHHHHh
Confidence 111 23466666655
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-09 Score=125.61 Aligned_cols=115 Identities=19% Similarity=0.230 Sum_probs=81.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee--ccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~--~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..||.+++...+.. .|. ....++-+||+..-.. .....|.++|
T Consensus 93 ~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~-~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL 158 (329)
T TIGR02974 93 DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFER-VGGSQTLQVDVRLVCATNADLPALAAEGRFRADL 158 (329)
T ss_pred CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEe-cCCCceeccceEEEEechhhHHHHhhcCchHHHH
Confidence 6899999999999876 9999999998755432 221 1234567788765322 2234678999
Q ss_pred hccC-CeEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCc--eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~--l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|| .+.|+++||. .+|+..++. ..+.++..- .|.. ..|+++|++.|..+..-.
T Consensus 159 ~~rl~~~~i~lPpLReR~eDI~~L~~----~fl~~~~~~---~~~~~~~~ls~~a~~~L~~y~WPG 217 (329)
T TIGR02974 159 LDRLAFDVITLPPLRERQEDIMLLAE----HFAIRMARE---LGLPLFPGFTPQAREQLLEYHWPG 217 (329)
T ss_pred HHHhcchhcCCCchhhhhhhHHHHHH----HHHHHHHHH---hCCCCCCCcCHHHHHHHHhCCCCc
Confidence 9999 4578999998 578877776 455554433 3444 479999999998766555
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-09 Score=123.85 Aligned_cols=154 Identities=16% Similarity=0.246 Sum_probs=91.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceee-eeceee--cCceEEEEEeCCcccCCCC--CCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGAFHLAKPS--DLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~-~~~~~~--~t~~ilfI~~gaf~~~~p~--~l~pel 493 (1165)
.+|++|||||+.+.+. +|..|+..|+.+.++ ++.|.. ....+++|++. +|. .+.++|
T Consensus 128 ~~GiL~lDEInrl~~~-------------~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~-----NP~e~~l~~aL 189 (334)
T PRK13407 128 NRGYLYIDEVNLLEDH-------------IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSG-----NPEEGELRPQL 189 (334)
T ss_pred CCCeEEecChHhCCHH-------------HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecC-----CcccCCCCHHH
Confidence 5689999999999766 777999999766543 233321 12345556663 342 488899
Q ss_pred hCCCCeeEecCCCCH-HHHHHHHhhhhH------hHH----------HHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccc
Q psy2392 494 QGRFPIRVELDSLSI-SDFTRIMTSTNV------CLT----------KQYEALLATEGIKIEFVDDGIQRLAEIAYCINE 556 (1165)
Q Consensus 494 ~~R~~~~v~~~~L~~-~~l~~Il~~~~~------~l~----------~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~ 556 (1165)
+.||...|.+.++.. ++..+|+..... ... .+....+...=-.+.++++.++++++.+....
T Consensus 190 ldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~- 268 (334)
T PRK13407 190 LDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALG- 268 (334)
T ss_pred HhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHC-
Confidence 999999999998877 777777763211 000 01111111112346789999999999997741
Q ss_pred cCCccCcchhHHHHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 557 RTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 557 ~~~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
.-|-|.-..++...-..... .++ -.|+.+.|+...
T Consensus 269 ---~~s~Ra~i~l~~aA~a~A~l--~Gr-~~V~~~Di~~~~ 303 (334)
T PRK13407 269 ---SDGLRGELTLLRAARALAAF--EGA-EAVGRSHLRSVA 303 (334)
T ss_pred ---CCCchHHHHHHHHHHHHHHH--cCC-CeeCHHHHHHHH
Confidence 22555555444333222211 111 346777665443
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.5e-10 Score=137.14 Aligned_cols=111 Identities=19% Similarity=0.379 Sum_probs=73.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-------eccC----ceEEEEecCCCCCCCCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-------IIKT----DHILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-------~~~t----~~ilfI~~gaf~~~~p~ 1085 (1165)
+.|++||||++.+... +|..|+..++...+...-+ .+.+ -++-+|++|.-. .-.
T Consensus 217 ngGtL~Ldei~~L~~~-------------~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~--~l~ 281 (608)
T TIGR00764 217 HKGVLYIDEIKTMPLE-------------VQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD--DLE 281 (608)
T ss_pred CCCEEEEEChHhCCHH-------------HHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH--HHh
Confidence 6799999999999854 8899999997665443111 1111 245678887521 124
Q ss_pred CCchhhhccCC---eEEEcCCC---CHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1086 DLIPELQGRFP---IRVELDSL---SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1086 dl~pel~gR~~---i~v~l~~l---~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|+|+.||+ +.+.|++. +.+...+++. .+.+ .++.+|....|+++|+++|.+.+.
T Consensus 282 ~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~-----~i~~---~~~r~G~l~~~s~~Av~~Li~~~~ 344 (608)
T TIGR00764 282 GMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ-----FVAQ---EVKKDGRIPHFTRDAVEEIVREAQ 344 (608)
T ss_pred hcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH-----HHHH---HHHHhCCCCcCCHHHHHHHHHHHH
Confidence 68999999999 88877654 5666555544 2222 233455445899999999987654
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=135.29 Aligned_cols=106 Identities=28% Similarity=0.398 Sum_probs=85.6
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
+.||||||+|++++. .|+.||++||- ...++.||++ +++|+.++|.+++||.+
T Consensus 631 ~KVvIIDEaD~Lt~~-------------AQnALLk~lEe----------p~~~~~FILi----~N~~~kIi~tIrSRC~~ 683 (846)
T PRK04132 631 FKIIFLDEADALTQD-------------AQQALRRTMEM----------FSSNVRFILS----CNYSSKIIEPIQSRCAI 683 (846)
T ss_pred CEEEEEECcccCCHH-------------HHHHHHHHhhC----------CCCCeEEEEE----eCChhhCchHHhhhceE
Confidence 579999999999865 67799999995 2346667776 35788899999999966
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+.|++|+.+++.++|. .++..+|+ .++++++..|+..| +++.|...+.++.+.
T Consensus 684 -i~F~~ls~~~i~~~L~-----------~I~~~Egi--~i~~e~L~~Ia~~s--------~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 684 -FRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA--------EGDMRRAINILQAAA 736 (846)
T ss_pred -EeCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 5999999999998884 23344565 57899999999888 688999999998764
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-09 Score=131.69 Aligned_cols=134 Identities=17% Similarity=0.332 Sum_probs=89.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~ 495 (1165)
...+++|||||.+.... ..|..|+.+++... .....++|++. ..|.. +.|.|.+
T Consensus 211 ~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~l~--------~~~~~iiits~----~~p~~l~~l~~~l~S 267 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE-----------RTQEEFFHTFNALH--------EAGKQIVLTSD----RPPKELPGLEERLRS 267 (450)
T ss_pred cCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHH--------HCCCcEEEECC----CCHHHHHHHHHHHHh
Confidence 35699999999986431 24556776665321 11112344331 23433 6789999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..|+|++++.+++.+||+ ..+... .+.++++++++||+.+ ...+|.|..+|.++
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~-----------~~~~~~--~~~l~~e~l~~ia~~~--------~~~~R~l~~~l~~l 326 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILK-----------KKAEEE--GIDLPDEVLEFIAKNI--------TSNVRELEGALNRL 326 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHH-----------HHHHHc--CCCCCHHHHHHHHcCc--------CCCHHHHHHHHHHH
Confidence 995 678999999999999994 112223 4578999999999877 46789999999988
Q ss_pred HHHhhcccCCCeeEEcccccccccccC
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
....... + -.||.+.+++.+.+.
T Consensus 327 ~~~~~~~--~--~~it~~~~~~~l~~~ 349 (450)
T PRK00149 327 IAYASLT--G--KPITLELAKEALKDL 349 (450)
T ss_pred HHHHHhh--C--CCCCHHHHHHHHHHh
Confidence 6543322 1 237777777777654
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.2e-10 Score=112.71 Aligned_cols=66 Identities=30% Similarity=0.399 Sum_probs=43.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--ceeecCc-------eEEEEEeCCcccCCCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--YGIIKTD-------HILFIASGAFHLAKPSDL 489 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--~~~~~t~-------~ilfI~~gaf~~~~p~~l 489 (1165)
+.+|+|||||+++.+. ++..|++++|+..+... ....... +..+|++++-....-..+
T Consensus 65 ~~~il~lDEin~a~~~-------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l 131 (139)
T PF07728_consen 65 KGGILVLDEINRAPPE-------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKEL 131 (139)
T ss_dssp EEEEEEESSCGG--HH-------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTT
T ss_pred ceeEEEECCcccCCHH-------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcC
Confidence 5789999999998755 88899999998776632 2233333 378888865332233479
Q ss_pred chhhhCCC
Q psy2392 490 IPELQGRF 497 (1165)
Q Consensus 490 ~pel~~R~ 497 (1165)
.|+|++||
T Consensus 132 ~~al~~Rf 139 (139)
T PF07728_consen 132 SPALLDRF 139 (139)
T ss_dssp CHHHHTT-
T ss_pred CHHHHhhC
Confidence 99999997
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=119.15 Aligned_cols=134 Identities=17% Similarity=0.297 Sum_probs=85.4
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC-
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP- 498 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~- 498 (1165)
..+++||+|+.+..... .|..|+.++.... .....++|++ ......-..+.|.|.+||.
T Consensus 98 ~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n~~~--------~~g~~ilits-~~~p~~l~~~~~~L~SRl~~ 157 (234)
T PRK05642 98 YELVCLDDLDVIAGKAD-----------WEEALFHLFNRLR--------DSGRRLLLAA-SKSPRELPIKLPDLKSRLTL 157 (234)
T ss_pred CCEEEEechhhhcCChH-----------HHHHHHHHHHHHH--------hcCCEEEEeC-CCCHHHcCccCccHHHHHhc
Confidence 45899999998864322 3556777764311 1112233433 2111111235799999983
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..+.+++|+.+++.+|++. + ....| +.++++++++|++.+ ...+|.|..+++++.. .
T Consensus 158 gl~~~l~~~~~e~~~~il~~----------k-a~~~~--~~l~~ev~~~L~~~~--------~~d~r~l~~~l~~l~~-~ 215 (234)
T PRK05642 158 ALVFQMRGLSDEDKLRALQL----------R-ASRRG--LHLTDEVGHFILTRG--------TRSMSALFDLLERLDQ-A 215 (234)
T ss_pred CeeeecCCCCHHHHHHHHHH----------H-HHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHH-H
Confidence 6679999999999999841 1 12234 578899999999988 5679999999998864 2
Q ss_pred hcccCCCeeEEcccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+... +. .||...+++.++
T Consensus 216 ~l~~-~~--~it~~~~~~~L~ 233 (234)
T PRK05642 216 SLQA-QR--KLTIPFLKETLG 233 (234)
T ss_pred HHHc-CC--cCCHHHHHHHhc
Confidence 2221 12 367666666553
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-09 Score=125.06 Aligned_cols=92 Identities=18% Similarity=0.294 Sum_probs=66.8
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
..|+|.+++.+.......- ....+.||+|||+|.++.. .++.||..+|..
T Consensus 119 ~~I~VdqiR~l~~~~~~~~-------------~~~~~kVviIDead~m~~~-------------aanaLLK~LEep---- 168 (365)
T PRK07471 119 TVITVDEVRELISFFGLTA-------------AEGGWRVVIVDTADEMNAN-------------AANALLKVLEEP---- 168 (365)
T ss_pred ccccHHHHHHHHHHhCcCc-------------ccCCCEEEEEechHhcCHH-------------HHHHHHHHHhcC----
Confidence 5577888777664422110 1124679999999999876 566999999852
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
..+.+||.. +.+|+.+.|.+++|+.. +.|.+|+.+++.++|.
T Consensus 169 ------p~~~~~IL~----t~~~~~llpti~SRc~~-i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 169 ------PARSLFLLV----SHAPARLLPTIRSRCRK-LRLRPLAPEDVIDALA 210 (365)
T ss_pred ------CCCeEEEEE----ECCchhchHHhhccceE-EECCCCCHHHHHHHHH
Confidence 344556654 25677889999999875 6999999999998884
|
|
| >KOG0744|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-09 Score=120.73 Aligned_cols=84 Identities=14% Similarity=0.244 Sum_probs=59.4
Q ss_pred eeeehhhhhhhccCCCC-CCCCcc-chhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1020 IIFLDEIDKITTRSSQN-NNTDIS-RAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~-~~~~~~-~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
.|+|||+..|+..+.+. ++++.| .-.|-++||.-++.- -.-.|++..|+.. --+.+.-+|..|-.|
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl--------K~~~NvliL~TSN----l~~siD~AfVDRADi 320 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL--------KRYPNVLILATSN----LTDSIDVAFVDRADI 320 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh--------ccCCCEEEEeccc----hHHHHHHHhhhHhhh
Confidence 57899999999876432 333332 234778899888731 1235566555532 123466899999999
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+....+++...++.|++.
T Consensus 321 ~~yVG~Pt~~ai~~Ilks 338 (423)
T KOG0744|consen 321 VFYVGPPTAEAIYEILKS 338 (423)
T ss_pred eeecCCccHHHHHHHHHH
Confidence 999999999999999993
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.5e-09 Score=115.86 Aligned_cols=132 Identities=17% Similarity=0.175 Sum_probs=84.3
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC--
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF-- 497 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~-- 497 (1165)
..+|||||+|.+... .|..|+.+++... ......+|.++... .....+.+.|.+||
T Consensus 91 ~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~--------~~~~~~vl~~~~~~-~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 91 AELYAVDDVERLDDA-------------QQIALFNLFNRVR--------AHGQGALLVAGPAA-PLALPLREDLRTRLGW 148 (227)
T ss_pred CCEEEEeChhhcCch-------------HHHHHHHHHHHHH--------HcCCcEEEEeCCCC-HHhCCCCHHHHHHHhc
Confidence 569999999987543 3456767665421 11122234443321 11224679999998
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
...|.++||+.++...++. +....+| +.++++++++|++.. ....|.|..+++.+-...
T Consensus 149 ~~~i~l~pl~~~~~~~~l~-----------~~~~~~~--v~l~~~al~~L~~~~--------~gn~~~l~~~l~~l~~~~ 207 (227)
T PRK08903 149 GLVYELKPLSDADKIAALK-----------AAAAERG--LQLADEVPDYLLTHF--------RRDMPSLMALLDALDRYS 207 (227)
T ss_pred CeEEEecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------cCCHHHHHHHHHHHHHHH
Confidence 4789999999998777773 2223345 578999999999844 467899999999864322
Q ss_pred hcccCCCeeEEcccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. .....||...+++.++
T Consensus 208 ~----~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 208 L----EQKRPVTLPLLREMLA 224 (227)
T ss_pred H----HhCCCCCHHHHHHHHh
Confidence 1 1113477777776654
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.1e-09 Score=112.03 Aligned_cols=86 Identities=17% Similarity=0.394 Sum_probs=66.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.||+|||+|++++. .|+.||..+|.. .++.+||... +++..+.|++++|+.
T Consensus 96 ~~kviiide~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~il~~----~~~~~l~~~i~sr~~ 148 (188)
T TIGR00678 96 GRRVVIIEDAERMNEA-------------AANALLKTLEEP----------PPNTLFILIT----PSPEKLLPTIRSRCQ 148 (188)
T ss_pred CeEEEEEechhhhCHH-------------HHHHHHHHhcCC----------CCCeEEEEEE----CChHhChHHHHhhcE
Confidence 5679999999999865 456899999862 2344555542 356789999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
.|.|.+++.+++.++|.. .| +++++++.|++.+
T Consensus 149 -~~~~~~~~~~~~~~~l~~---------------~g----i~~~~~~~i~~~~ 181 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIR---------------QG----ISEEAAELLLALA 181 (188)
T ss_pred -EeeCCCCCHHHHHHHHHH---------------cC----CCHHHHHHHHHHc
Confidence 679999999999888841 13 5789999998877
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=126.36 Aligned_cols=132 Identities=16% Similarity=0.209 Sum_probs=90.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec-eeecCceEEEEEeCCcccCCCCCCch--hhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHLAKPSDLIP--ELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~~~p~~l~p--el~~ 495 (1165)
..|++|+|||+.+-+. +|.-||.++|.+.++.-. -.....++.+|||.+- .-++.+.. .|..
T Consensus 173 ~GGtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~--~l~~~~~~g~dl~~ 237 (403)
T COG1221 173 NGGTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE--DLEEAVLAGADLTR 237 (403)
T ss_pred CCCEEehhhhhhCCHh-------------HHHHHHHHHHcCceEecCCCCCcCCCceeeecccc--CHHHHHHhhcchhh
Confidence 6899999999999876 677999999977655211 1345567778888642 22234555 6776
Q ss_pred -CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeC-HHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 -RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV-DDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 -R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~-~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|++.+|.++||.+. ...|+-..++- +.++. ...+..+... +++++.|..+.. .+..|-|++.++++
T Consensus 238 rl~~~~I~LPpLrER-~~Di~~L~e~F-l~~~~---~~l~~~~~~~~~~a~~~L~~y~~-------pGNirELkN~Ve~~ 305 (403)
T COG1221 238 RLNILTITLPPLRER-KEDILLLAEHF-LKSEA---RRLGLPLSVDSPEALRALLAYDW-------PGNIRELKNLVERA 305 (403)
T ss_pred hhcCceecCCChhhc-hhhHHHHHHHH-HHHHH---HHcCCCCCCCCHHHHHHHHhCCC-------CCcHHHHHHHHHHH
Confidence 89999999999988 67776433332 23332 2335544444 588888876543 36689999999999
Q ss_pred HHHh
Q psy2392 574 LEEV 577 (1165)
Q Consensus 574 l~~~ 577 (1165)
+...
T Consensus 306 ~~~~ 309 (403)
T COG1221 306 VAQA 309 (403)
T ss_pred HHHh
Confidence 8765
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-09 Score=120.79 Aligned_cols=70 Identities=16% Similarity=0.330 Sum_probs=55.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. .++.||+.+|.. .++.+||... .+|+.+.|.+++|+.
T Consensus 93 ~~kv~iI~~ad~m~~~-------------a~naLLK~LEep----------p~~t~~il~~----~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQ-------------AQNAFLKTIEEP----------PKGVFIILLC----ENLEQILDTIKSRCQ 145 (313)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChHhCcHHHHhhce
Confidence 5679999999999765 566999999962 3455565542 468899999999997
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
.+.|.+++.+++.+.|.
T Consensus 146 -~~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 146 -IYKLNRLSKEEIEKFIS 162 (313)
T ss_pred -eeeCCCcCHHHHHHHHH
Confidence 57999999999887773
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.4e-09 Score=122.64 Aligned_cols=69 Identities=36% Similarity=0.555 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecC
Q psy2392 771 VIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 850 (1165)
Q Consensus 771 ~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~s 850 (1165)
....+...+...++|+++++..+..++... +++||.||||||||++|+.+|+.++.+|++++|.
T Consensus 14 ~~~~~~~~~~~~~~g~~~~~~~~l~a~~~~----------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t 77 (329)
T COG0714 14 ILGKIRSELEKVVVGDEEVIELALLALLAG----------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCT 77 (329)
T ss_pred HHHHHHhhcCCeeeccHHHHHHHHHHHHcC----------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecC
Confidence 345566677788999999998888877643 7899999999999999999999999999999998
Q ss_pred Ccccc
Q psy2392 851 KFTEV 855 (1165)
Q Consensus 851 e~~~~ 855 (1165)
....+
T Consensus 78 ~~l~p 82 (329)
T COG0714 78 PDLLP 82 (329)
T ss_pred CCCCH
Confidence 75543
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-09 Score=120.20 Aligned_cols=133 Identities=17% Similarity=0.239 Sum_probs=83.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ecee--ecCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~--~~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
..|++|||||+.+.+. +|..||..|+.+.++. +-|. .....+++|++.+-. ...|.|+|.-
T Consensus 144 ~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~---eg~l~~~Lld 207 (350)
T CHL00081 144 NRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPE---EGELRPQLLD 207 (350)
T ss_pred CCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc---cCCCCHHHHH
Confidence 5899999999999876 7778999887544332 2221 122345566654311 1249999999
Q ss_pred CCCeeEecCCCC-HHHHHHHHhhhhH------hHHHH--------HHHH--HhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 496 RFPIRVELDSLS-ISDFTRIMTSTNV------CLTKQ--------YEAL--LATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 496 R~~~~v~~~~L~-~~~l~~Il~~~~~------~l~~~--------~~~l--l~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
||.+.|.+..++ .++-.+|++.... ...++ ...+ +...=-.+.++++.+++|++++...+
T Consensus 208 Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~--- 284 (350)
T CHL00081 208 RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELD--- 284 (350)
T ss_pred HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHC---
Confidence 999999999998 4777788863211 00000 0111 11112346789999999999998742
Q ss_pred CccCcchhHHHHH
Q psy2392 559 ENIGARRLYTAME 571 (1165)
Q Consensus 559 ~~~GAR~l~~~ie 571 (1165)
.-|=|.-..++.
T Consensus 285 -~~s~Ra~i~l~r 296 (350)
T CHL00081 285 -VDGLRGDIVTNR 296 (350)
T ss_pred -CCCChHHHHHHH
Confidence 234555554443
|
|
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-09 Score=119.73 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=74.1
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
++||||.|.+.-.+....-++ .||.-|-.+ ..+-|.-..+-+|.+++ +.|.||.-..-.|+...|
T Consensus 446 llFIDEADAFLceRnktymSE-----aqRsaLNAl-----LfRTGdqSrdivLvlAt-----NrpgdlDsAV~DRide~v 510 (630)
T KOG0742|consen 446 LLFIDEADAFLCERNKTYMSE-----AQRSALNAL-----LFRTGDQSRDIVLVLAT-----NRPGDLDSAVNDRIDEVV 510 (630)
T ss_pred EEEehhhHHHHHHhchhhhcH-----HHHHHHHHH-----HHHhcccccceEEEecc-----CCccchhHHHHhhhhhee
Confidence 899999999776543311112 344333211 01224444455555554 789999999999999999
Q ss_pred EcCCCCHHHHHHHHhhhHHHhH---------HHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1100 ELDSLSISDFTRIMTSTNVCLT---------KQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1100 ~l~~l~~~~l~~il~~~~~~l~---------~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+|+-+++++..++|..-.+..+ -....||+.+--+|++..+.-..+++.++..
T Consensus 511 eFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkk 572 (630)
T KOG0742|consen 511 EFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKK 572 (630)
T ss_pred ecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHh
Confidence 9999999999999983322211 1134566666677777665555554444443
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-09 Score=127.26 Aligned_cols=140 Identities=15% Similarity=0.269 Sum_probs=88.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...+++||||+.+.... ..|..|+.++..-. .....++ .++......-..+.+.|.+||.
T Consensus 202 ~~dvLiIDDiq~l~~k~-----------~~qeelf~l~N~l~--------~~~k~II-lts~~~p~~l~~l~~rL~SR~~ 261 (445)
T PRK12422 202 NVDALFIEDIEVFSGKG-----------ATQEEFFHTFNSLH--------TEGKLIV-ISSTCAPQDLKAMEERLISRFE 261 (445)
T ss_pred cCCEEEEcchhhhcCCh-----------hhHHHHHHHHHHHH--------HCCCcEE-EecCCCHHHHhhhHHHHHhhhc
Confidence 45799999999986432 24556665543211 0112223 3322111111246789999995
Q ss_pred --eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 499 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 499 --~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
..+.+.+|+.+++..||+ ..++..| +.++++++++|+... ..+.|.|...+++++..
T Consensus 262 ~Gl~~~l~~pd~e~r~~iL~-----------~k~~~~~--~~l~~evl~~la~~~--------~~dir~L~g~l~~l~~~ 320 (445)
T PRK12422 262 WGIAIPLHPLTKEGLRSFLE-----------RKAEALS--IRIEETALDFLIEAL--------SSNVKSLLHALTLLAKR 320 (445)
T ss_pred CCeEEecCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHH
Confidence 889999999999999994 1122234 578999999999866 46899999999998533
Q ss_pred hhcccCCCeeEEcccccccccccC
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
..|..-. ...||.+.+++.+.+.
T Consensus 321 ~a~~~~~-~~~i~~~~~~~~l~~~ 343 (445)
T PRK12422 321 VAYKKLS-HQLLYVDDIKALLHDV 343 (445)
T ss_pred HHHHHhh-CCCCCHHHHHHHHHHh
Confidence 3232111 1237777777776643
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=5e-09 Score=126.76 Aligned_cols=134 Identities=16% Similarity=0.187 Sum_probs=82.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ece--eecCceEEEEEeCCcc------c------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFH------L------ 483 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~--~~~t~~ilfI~~gaf~------~------ 483 (1165)
.+|++|||||+++.+. +|..|+..||.+.++. +.+ .....++.+|++.+-. .
T Consensus 295 ~~GvLfLDEi~e~~~~-------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~ 361 (499)
T TIGR00368 295 HNGVLFLDELPEFKRS-------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCR 361 (499)
T ss_pred CCCeEecCChhhCCHH-------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCccccc
Confidence 6799999999998765 7789999998776542 222 1122466677765421 1
Q ss_pred CCC-------CCCchhhhCCCCeeEecCCCCHHHHHH---------HHhhhhHhHHHHHHHHHhhc-CCe----------
Q psy2392 484 AKP-------SDLIPELQGRFPIRVELDSLSISDFTR---------IMTSTNVCLTKQYEALLATE-GIK---------- 536 (1165)
Q Consensus 484 ~~p-------~~l~pel~~R~~~~v~~~~L~~~~l~~---------Il~~~~~~l~~~~~~ll~~~-~i~---------- 536 (1165)
+.| ..+.+.|+.||++.|.+.+++.+++.+ |-.....+...|..+ +... ++.
T Consensus 362 c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R-~~~~~~~~~N~~l~~~~l 440 (499)
T TIGR00368 362 CSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIR-YEKFANINKNADLNSDEI 440 (499)
T ss_pred CCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHH-hcCCCCCcccccCCHHHH
Confidence 111 138899999999999999998887643 111111111222222 2111 111
Q ss_pred ---eEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 537 ---IEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 537 ---l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
..+++++.+.|....... +..+|..++++.
T Consensus 441 ~~~~~l~~~~~~~l~~a~~~~-----~lS~R~~~rilr 473 (499)
T TIGR00368 441 EQFCKLSAIDANDLEGALNKL-----GLSSRATHRILK 473 (499)
T ss_pred HhhcCCCHHHHHHHHHHHHhc-----CCCchHHHHHHH
Confidence 245677777776666553 678999998874
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.7e-09 Score=122.05 Aligned_cols=120 Identities=17% Similarity=0.297 Sum_probs=76.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccc-eeeeeeccC--ceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTV-NTKYGIIKT--DHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v-~~k~~~~~t--~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
++|++|||||+.+... +|..||..|+...+ .++-|...+ ..+.+|++..- .-..|.|.|..
T Consensus 131 ~~GvL~lDEi~~L~~~-------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np---~eg~l~~~Lld 194 (337)
T TIGR02030 131 NRGILYIDEVNLLEDH-------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNP---EEGELRPQLLD 194 (337)
T ss_pred cCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccc---ccCCCCHHHHh
Confidence 5799999999998665 89999999975543 233332222 23455555321 11248899999
Q ss_pred cCCeEEEcCCCCH-HHHHHHHhhhHH------HhHHHH--------HHHH--hhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1094 RFPIRVELDSLSI-SDFTRIMTSTNV------CLTKQY--------EALL--ATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1094 R~~i~v~l~~l~~-~~l~~il~~~~~------~l~~q~--------~~l~--~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
||.+.+.+..+.. ++..+|++.... ...+.+ ..++ ...=-++.++|+++++|+.++...
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~ 270 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAEL 270 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHH
Confidence 9999999999976 777788874110 000000 1111 111123478999999999998764
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.5e-09 Score=114.39 Aligned_cols=100 Identities=19% Similarity=0.269 Sum_probs=63.9
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc-hhhhccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQGRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~-pel~gR~~ 1096 (1165)
.+++||||+|.+.... ..|..|..+++... .... .+|+++...... .++. +.|.+|+.
T Consensus 91 ~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~--------~~~~-~iIits~~~~~~-~~~~~~~L~~r~~ 149 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVR--------EAGG-RLLIAGRAAPAQ-LPLRLPDLRTRLA 149 (226)
T ss_pred CCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHH--------HcCC-eEEEECCCChHH-CCcccHHHHHHHh
Confidence 4699999999986541 13666776665311 0111 244444422111 1233 88999984
Q ss_pred --eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1097 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1097 --i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
.+++|++|+.++...++. ..+...|+ .+++++++.|+.. ...
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~-----------~~~~~~~~--~~~~~~l~~L~~~-~~g 193 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQ-----------SRAARRGL--QLPDEVADYLLRH-GSR 193 (226)
T ss_pred cCeeEecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHh-ccC
Confidence 788999999999988886 12233455 7899999999984 444
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-08 Score=114.94 Aligned_cols=115 Identities=16% Similarity=0.166 Sum_probs=68.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceee-cCceEEEEEeCCccc-------CCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII-KTDHILFIASGAFHL-------AKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~-~t~~ilfI~~gaf~~-------~~p~~l~ 490 (1165)
+.+++|||||+.+.+. +|..|++++++..+....+.+ ...+.-+|+|++-.. .-...+.
T Consensus 180 ~GgvLiLDEId~a~p~-------------vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~ 246 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-------------ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKID 246 (383)
T ss_pred cCCEEEEeCcCcCCHH-------------HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccC
Confidence 5789999999998866 666888888866544322222 224566777765321 0124689
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHH---HHHHHHhhcCCeeEeCHHHHHHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK---QYEALLATEGIKIEFVDDGIQRLAE 549 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~---~~~~ll~~~~i~l~~~~~a~~~la~ 549 (1165)
++++.||- .|.|.-+++-+. .|+.. ...+.+ ..+..+..+|+...++-.++-.-++
T Consensus 247 ~AllDRFv-~I~~dyp~~~E~-~i~~~-~~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~ 305 (383)
T PHA02244 247 GATLDRFA-PIEFDYDEKIEH-LISNG-DEDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKK 305 (383)
T ss_pred HHHHhhcE-EeeCCCCcHHHH-HHhhh-HHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 99999996 479998875443 33321 122222 2223344466666666554444333
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-09 Score=127.87 Aligned_cols=136 Identities=18% Similarity=0.290 Sum_probs=87.4
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC-
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP- 498 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~- 498 (1165)
..+++|||||.+... +..|..|+.+++...- ....++|++ ......-..+.|.|.+||.
T Consensus 200 ~dlLiiDDi~~l~~~-----------~~~~~~l~~~~n~~~~--------~~~~iiits-~~~p~~l~~l~~~l~SRl~~ 259 (405)
T TIGR00362 200 VDLLLIDDIQFLAGK-----------ERTQEEFFHTFNALHE--------NGKQIVLTS-DRPPKELPGLEERLRSRFEW 259 (405)
T ss_pred CCEEEEehhhhhcCC-----------HHHHHHHHHHHHHHHH--------CCCCEEEec-CCCHHHHhhhhhhhhhhccC
Confidence 469999999998643 2346677776653110 111223333 2111111236688999996
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..|.|++++.+++..||. ..++..+ +.++++++++||+.. ....|.|..+|.++....
T Consensus 260 g~~v~i~~pd~~~r~~il~-----------~~~~~~~--~~l~~e~l~~ia~~~--------~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 260 GLVVDIEPPDLETRLAILQ-----------KKAEEEG--LELPDEVLEFIAKNI--------RSNVRELEGALNRLLAYA 318 (405)
T ss_pred CeEEEeCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHH
Confidence 579999999999999994 1223334 577899999999866 456788999988886544
Q ss_pred hcccCCCeeEEcccccccccccC
Q psy2392 578 SFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
... + -.||.+.+++.+...
T Consensus 319 ~~~--~--~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 319 SLT--G--KPITLELAKEALKDL 337 (405)
T ss_pred HHh--C--CCCCHHHHHHHHHHh
Confidence 321 1 236777777766654
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=117.28 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=89.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
..-||.|||+|.+....++ +-..|+..-+- ...++.+|+.++-..- ...|.|-+.+||.
T Consensus 123 ~~~IvvLDEid~L~~~~~~----------~LY~L~r~~~~----------~~~~v~vi~i~n~~~~-~~~ld~rv~s~l~ 181 (366)
T COG1474 123 KTVIVILDEVDALVDKDGE----------VLYSLLRAPGE----------NKVKVSIIAVSNDDKF-LDYLDPRVKSSLG 181 (366)
T ss_pred CeEEEEEcchhhhccccch----------HHHHHHhhccc----------cceeEEEEEEeccHHH-HHHhhhhhhhccC
Confidence 4569999999999877432 33333333221 1445666666432111 3457788887754
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..|.|+|++.+++..||.. - ....-..-.+++++++.+|..+.. ..++||....++....+-+
T Consensus 182 ~~~I~F~pY~a~el~~Il~~----R-------~~~~~~~~~~~~~vl~lia~~~a~-----~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 182 PSEIVFPPYTAEELYDILRE----R-------VEEGFSAGVIDDDVLKLIAALVAA-----ESGDARKAIDILRRAGEIA 245 (366)
T ss_pred cceeeeCCCCHHHHHHHHHH----H-------HHhhccCCCcCccHHHHHHHHHHH-----cCccHHHHHHHHHHHHHHH
Confidence 4568999999999999951 1 111122336899999999999887 4668999999998887755
Q ss_pred hcccCCCeeEEcccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSR 596 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~ 596 (1165)
..+.. -+++.+.|+..
T Consensus 246 e~~~~---~~v~~~~v~~a 261 (366)
T COG1474 246 EREGS---RKVSEDHVREA 261 (366)
T ss_pred HhhCC---CCcCHHHHHHH
Confidence 33222 34676666654
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-08 Score=117.67 Aligned_cols=272 Identities=15% Similarity=0.141 Sum_probs=144.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCC-------CeEEEec----
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA-------PFIKIEA---- 849 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~-------~fi~l~~---- 849 (1165)
++++|+++++..+...+... ..|+.. ....++|+||||||||++|++|++.++. +++.+.+
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~--a~g~~~------~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~ 122 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSA--AQGLEE------RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEE 122 (361)
T ss_pred hhccCcHHHHHHHHHHHHHH--HhcCCC------CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCC
Confidence 48999999999999988765 223222 1366899999999999999999999976 9999988
Q ss_pred CCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHH
Q psy2392 850 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 929 (1165)
Q Consensus 850 se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~ 929 (1165)
+...+. ..+--+. .+++.|...... + ++.++..|-. -.|..+..
T Consensus 123 sp~~e~-Pl~l~p~-~~r~~~~~~~~~-~----------------~~~~~~~l~p-----------------~c~~~l~~ 166 (361)
T smart00763 123 SPMHED-PLHLFPD-ELREDLEDEYGI-P----------------RRRLEGDLSP-----------------WCRKRLDE 166 (361)
T ss_pred CCCccC-CcccCCH-HHHHHHHHHhCC-C----------------hhhcCCCCCH-----------------HHHHHHHH
Confidence 555443 3333222 244444322111 0 0001100000 01111211
Q ss_pred hhccCCCCCeEEEEEecCCC--CcccccCC--cchHHHHHHHHHHHHhhCCC------CccceeeeHHHHHHHHHHHHHh
Q psy2392 930 RLREGALDNKEIEIELNDTG--PHMEIMSP--PGMEEMTAQIKTMFSVIGNH------RKKTRKIKIREAIKLLIDEEAN 999 (1165)
Q Consensus 930 ~l~~g~ld~r~v~i~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~tvk~a~~~l~~~~~~ 999 (1165)
. ..|.+..-.|.--.+... ..+..+.| .+..+ +..+.|.+.+. .+..+..
T Consensus 167 e-~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qd----i~~L~G~vd~~k~~~~~~~dp~a~--------------- 226 (361)
T smart00763 167 E-YGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQD----ISELTGKVDIRKLEIYSESDPRAF--------------- 226 (361)
T ss_pred H-hCCCcceEEEEEecCCeecceEEEEECCCCCCccc----HHHHhcccCHHHhcccCCCCCeEE---------------
Confidence 1 245444322221111111 11222222 12211 22222222211 0001111
Q ss_pred hcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-ee-eeccCceEEEEecC
Q psy2392 1000 KLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KY-GIIKTDHILFIASG 1077 (1165)
Q Consensus 1000 ~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~-~~~~t~~ilfI~~g 1077 (1165)
+-+..--+| ++||+-++||+|.... .|.+||.+++...+.. .+ +.+..+. +||++.
T Consensus 227 ---~~~G~l~~a-----NrGi~~f~Ei~K~~~~-------------~l~~LL~~~qE~~v~~~~~~~~~~~d~-liia~s 284 (361)
T smart00763 227 ---SYDGALNRA-----NRGILEFVEMFKADIK-------------FLHPLLTATQEGNIKGTGGFAMIPIDG-LIIAHS 284 (361)
T ss_pred ---eccCccccc-----cCceEEEeehhcCCHH-------------HHHHHhhhhhcceEecCCcccccccce-EEEEeC
Confidence 100111122 6799999999999877 8999999998777754 33 3455555 666663
Q ss_pred CCCC---CCCCCCchhhhccCCeEEEcCCC-CHHHHHHHHhhhHHHhHHHHHHHHhhc-CCceEeCHHHHHHHHHHHh
Q psy2392 1078 AFHL---AKPSDLIPELQGRFPIRVELDSL-SISDFTRIMTSTNVCLTKQYEALLATE-GIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1078 af~~---~~p~dl~pel~gR~~i~v~l~~l-~~~~l~~il~~~~~~l~~q~~~l~~~e-gv~l~~~~~ai~~ia~~a~ 1150 (1165)
+=.. -+-.....+|+.||-+ +.+.-+ +-++=.+|.+ +++... -....|.+-+++.+|..|.
T Consensus 285 Ne~e~~~~~~~k~~eaf~dR~~~-i~vpY~l~~~~E~~Iy~-----------k~~~~s~~~~~~~aP~~le~aa~~av 350 (361)
T smart00763 285 NESEWQRFKSNKKNEALLDRIIK-VKVPYCLRVSEEAQIYE-----------KLLRNSDLTEAHIAPHTLEMAALFSV 350 (361)
T ss_pred CHHHHhhhhccccchhhhhceEE-EeCCCcCCHHHHHHHHH-----------HHhccCcCcccccCchHHHHHHHHHH
Confidence 3110 0011346899999984 566543 4444444444 344432 2346788999998888775
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-09 Score=117.61 Aligned_cols=99 Identities=17% Similarity=0.280 Sum_probs=65.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---Cchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~g 1093 (1165)
+..+++|||||.+..... .|..|+.++.... .....++|.++. ..|+. ..|.|.+
T Consensus 91 ~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~--------~~~~~illits~---~~p~~l~~~~~~L~s 148 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIK--------EQGKTLLLISAD---CSPHALSIKLPDLAS 148 (229)
T ss_pred cCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHH--------HcCCcEEEEeCC---CChHHccccchhHHH
Confidence 346999999999975421 3456776665211 112222333332 23433 3499999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|+. ..++|++++.++..+||+ ..+..+|+ .++++++++|++.+.
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~-----------~~a~~~~l--~l~~~v~~~L~~~~~ 194 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQ-----------RNAYQRGI--ELSDEVANFLLKRLD 194 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhcc
Confidence 975 567999999999999998 23334454 789999999998765
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=135.39 Aligned_cols=94 Identities=30% Similarity=0.406 Sum_probs=76.8
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||||||+|+++.. .|+.||++||.. +.++.||++ ++.|+.++|.+++||-+
T Consensus 631 ~KVvIIDEaD~Lt~~-------------AQnALLk~lEep----------~~~~~FILi----~N~~~kIi~tIrSRC~~ 683 (846)
T PRK04132 631 FKIIFLDEADALTQD-------------AQQALRRTMEMF----------SSNVRFILS----CNYSSKIIEPIQSRCAI 683 (846)
T ss_pred CEEEEEECcccCCHH-------------HHHHHHHHhhCC----------CCCeEEEEE----eCChhhCchHHhhhceE
Confidence 359999999999864 899999999952 345567766 46889999999999976
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+.|++++.+++..+|. .++..||+ .++++++..|++.|...
T Consensus 684 -i~F~~ls~~~i~~~L~-----------~I~~~Egi--~i~~e~L~~Ia~~s~GD 724 (846)
T PRK04132 684 -FRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIAEGD 724 (846)
T ss_pred -EeCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHcCCC
Confidence 5999999999998888 45566776 57899999999887654
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-08 Score=108.15 Aligned_cols=87 Identities=17% Similarity=0.374 Sum_probs=67.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .|+.||..+|... ++.+||+.. +++..+.|.+.+|+-
T Consensus 96 ~~kviiide~~~l~~~-------------~~~~Ll~~le~~~----------~~~~~il~~----~~~~~l~~~i~sr~~ 148 (188)
T TIGR00678 96 GRRVVIIEDAERMNEA-------------AANALLKTLEEPP----------PNTLFILIT----PSPEKLLPTIRSRCQ 148 (188)
T ss_pred CeEEEEEechhhhCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChHhChHHHHhhcE
Confidence 3569999999999875 6789999998632 334455442 356789999999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.++|.+++.+++.++|.. +| +++++++.|+..+-
T Consensus 149 -~~~~~~~~~~~~~~~l~~---------------~g----i~~~~~~~i~~~~~ 182 (188)
T TIGR00678 149 -VLPFPPLSEEALLQWLIR---------------QG----ISEEAAELLLALAG 182 (188)
T ss_pred -EeeCCCCCHHHHHHHHHH---------------cC----CCHHHHHHHHHHcC
Confidence 579999999999888871 14 57899999987664
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-08 Score=118.57 Aligned_cols=71 Identities=17% Similarity=0.331 Sum_probs=58.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||+|++... .|+.||+.+|... ++.+||... ++|+.+.|.+.+|+-
T Consensus 110 ~~kvviI~~a~~~~~~-------------a~NaLLK~LEEPp----------~~~~~Il~t----~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 110 NKKVYIIEHADKMTAS-------------AANSLLKFLEEPS----------GGTTAILLT----ENKHQILPTILSRCQ 162 (329)
T ss_pred CceEEEeehHhhhCHH-------------HHHHHHHHhcCCC----------CCceEEEEe----CChHhCcHHHHhhce
Confidence 3469999999999876 7889999999633 344566543 478899999999988
Q ss_pred eEEEcCCCCHHHHHHHHhh
Q psy2392 1097 IRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~ 1115 (1165)
+ ++|++++.+++.++|++
T Consensus 163 ~-i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 163 V-VEFRPLPPESLIQRLQE 180 (329)
T ss_pred e-eeCCCCCHHHHHHHHHH
Confidence 7 69999999999988873
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9e-09 Score=115.51 Aligned_cols=68 Identities=26% Similarity=0.500 Sum_probs=51.2
Q ss_pred HhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC--CCceEEecccccc
Q psy2392 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTE 256 (1165)
Q Consensus 180 ~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~~ 256 (1165)
...+.++||.+|.++.-..+..- +.| .. ..+.+|+.||||||||.||-.+|++|| .||..+++|++.+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mi--k~g----k~---aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS 105 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMI--KQG----KM---AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYS 105 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHH--HhC----cc---cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeee
Confidence 34678999999987644433221 111 00 137999999999999999999999995 8999999999844
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-09 Score=128.79 Aligned_cols=115 Identities=18% Similarity=0.296 Sum_probs=80.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeecc--CceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK--TDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~--t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++||||||.+... +|..|+.+++...+. +.|.-. .-++-+|++..-.. .....|.++|
T Consensus 290 ~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~-~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L 355 (534)
T TIGR01817 290 DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFE-RVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADL 355 (534)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEE-ECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHH
Confidence 5799999999999876 999999999865432 222211 12456777754321 2234588899
Q ss_pred hccCC-eEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..||. +.+.++||. .+|+..++. ..+.++..- .|..+.|+++|++.|.......
T Consensus 356 ~~rl~~~~i~lPpLreR~eDi~~L~~----~~l~~~~~~---~~~~~~~s~~a~~~L~~~~WPG 412 (534)
T TIGR01817 356 YYRINVVPIFLPPLRERREDIPLLAE----AFLEKFNRE---NGRPLTITPSAIRVLMSCKWPG 412 (534)
T ss_pred HHHhcCCeeeCCCcccccccHHHHHH----HHHHHHHHH---cCCCCCCCHHHHHHHHhCCCCC
Confidence 99985 467899998 688888877 556655443 3444689999999998766555
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >KOG1942|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-08 Score=105.80 Aligned_cols=64 Identities=22% Similarity=0.469 Sum_probs=48.9
Q ss_pred hcccEecchhhHHH---HHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC--CCceEEeccccc
Q psy2392 181 LDKYVIGQNRAKRA---VAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFT 255 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~---l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~ 255 (1165)
....++||+.|.++ +...++.. +. ..+.+||.||||+|||.||-++++++| .||..+-.|+..
T Consensus 36 ~~~g~vGQ~~AReAagiivdlik~K--km----------aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvy 103 (456)
T KOG1942|consen 36 VAAGFVGQENAREAAGIIVDLIKSK--KM----------AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVY 103 (456)
T ss_pred cccccccchhhhhhhhHHHHHHHhh--hc----------cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhh
Confidence 34589999998764 34444432 11 137899999999999999999999994 899988888864
Q ss_pred c
Q psy2392 256 E 256 (1165)
Q Consensus 256 ~ 256 (1165)
+
T Consensus 104 S 104 (456)
T KOG1942|consen 104 S 104 (456)
T ss_pred h
Confidence 4
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-10 Score=112.20 Aligned_cols=37 Identities=43% Similarity=0.743 Sum_probs=32.9
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 854 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~ 854 (1165)
++||+||||||||++++.+|+.++.+++.+.++..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~ 37 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT 37 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence 5899999999999999999999999999999987543
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=115.78 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=58.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhccccc-Cceeeee-ceeecCc--eEEEEEeCCccc-CCC-------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE-GTTVNTK-YGIIKTD--HILFIASGAFHL-AKP------- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~E-g~~v~~~-~~~~~t~--~ilfI~~gaf~~-~~p------- 486 (1165)
.+.++|+||||.+.++ +|..|..++| ++.++.. .+.+-+. +..+|||.+-.. ...
T Consensus 134 ~g~illlDEin~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt 200 (327)
T TIGR01650 134 HNVALCFDEYDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGT 200 (327)
T ss_pred CCeEEEechhhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeee
Confidence 4678999999998665 7778888888 4454431 1222222 455678754211 111
Q ss_pred CCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 487 SDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
..+.++++.||-+.+.+.-++.++-.+||.
T Consensus 201 ~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~ 230 (327)
T TIGR01650 201 QQINQAQMDRWSIVTTLNYLEHDNEAAIVL 230 (327)
T ss_pred ecCCHHHHhheeeEeeCCCCCHHHHHHHHH
Confidence 137899999999988999999999999984
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >KOG0742|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=112.69 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=82.1
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
.=++||||.|.+.-.+....-++.-+. ..+.||-- -|.-..+-+|++++ +.|.+|+-+.-.||+.
T Consensus 444 GLllFIDEADAFLceRnktymSEaqRs-aLNAlLfR---------TGdqSrdivLvlAt-----NrpgdlDsAV~DRide 508 (630)
T KOG0742|consen 444 GLLLFIDEADAFLCERNKTYMSEAQRS-ALNALLFR---------TGDQSRDIVLVLAT-----NRPGDLDSAVNDRIDE 508 (630)
T ss_pred ceEEEehhhHHHHHHhchhhhcHHHHH-HHHHHHHH---------hcccccceEEEecc-----CCccchhHHHHhhhhh
Confidence 348999999998765443121221111 22233211 12222233444444 7899999999999999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHH---------HHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTK---------QYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~---------~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+|+-+++++..++|..-.+..+. ....+++.+.-.|.+.......++..+.. .++.+..|-+-.++
T Consensus 509 ~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk---kTeGfSGREiakLv 585 (630)
T KOG0742|consen 509 VVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK---KTEGFSGREIAKLV 585 (630)
T ss_pred eeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH---hccCCcHHHHHHHH
Confidence 9999999999999999522222110 12344554556677766555555554443 34677788887776
Q ss_pred HHHH
Q psy2392 571 EKLL 574 (1165)
Q Consensus 571 e~~l 574 (1165)
-.+-
T Consensus 586 a~vQ 589 (630)
T KOG0742|consen 586 ASVQ 589 (630)
T ss_pred HHHH
Confidence 5543
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=112.26 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=64.9
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC--
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF-- 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~-- 1095 (1165)
..++||||+|.+... .|..|+.+++...-. ....+|.++... .....+.+.|.+||
T Consensus 91 ~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~--------~~~~vl~~~~~~-~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 91 AELYAVDDVERLDDA-------------QQIALFNLFNRVRAH--------GQGALLVAGPAA-PLALPLREDLRTRLGW 148 (227)
T ss_pred CCEEEEeChhhcCch-------------HHHHHHHHHHHHHHc--------CCcEEEEeCCCC-HHhCCCCHHHHHHHhc
Confidence 468999999987543 577788877642211 122233343321 12234779999998
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEI 1148 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~ 1148 (1165)
...++++||+.++...+|. .....+|+ .++++++++|+..
T Consensus 149 ~~~i~l~pl~~~~~~~~l~-----------~~~~~~~v--~l~~~al~~L~~~ 188 (227)
T PRK08903 149 GLVYELKPLSDADKIAALK-----------AAAAERGL--QLADEVPDYLLTH 188 (227)
T ss_pred CeEEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHh
Confidence 4789999999998877777 23444565 7899999999983
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=9.8e-09 Score=118.00 Aligned_cols=70 Identities=17% Similarity=0.361 Sum_probs=55.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
+..|++||++|++... .|+.||+.+|... ++.+||... .+|+.+.|.+++||-
T Consensus 93 ~~kv~iI~~ad~m~~~-------------a~naLLK~LEepp----------~~t~~il~~----~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQ-------------AQNAFLKTIEEPP----------KGVFIILLC----ENLEQILDTIKSRCQ 145 (313)
T ss_pred CceEEEEechhhcCHH-------------HHHHHHHHhcCCC----------CCeEEEEEe----CChHhCcHHHHhhce
Confidence 3459999999999766 7889999999643 233444432 478899999999997
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
+ ++|.+++.+++.+.|.
T Consensus 146 ~-~~~~~~~~~~~~~~l~ 162 (313)
T PRK05564 146 I-YKLNRLSKEEIEKFIS 162 (313)
T ss_pred e-eeCCCcCHHHHHHHHH
Confidence 4 7999999999988886
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=116.84 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=59.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhcccccc-Ccccee-eeeeccCce--EEEEecCCCCC-CCC-------
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE-GTTVNT-KYGIIKTDH--ILFIASGAFHL-AKP------- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~E-g~~v~~-k~~~~~t~~--ilfI~~gaf~~-~~p------- 1084 (1165)
.++++++||||..... +|..|.+++| +..++. .-+.+-+-| ..+||+.+=.. ...
T Consensus 134 ~g~illlDEin~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt 200 (327)
T TIGR01650 134 HNVALCFDEYDAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGT 200 (327)
T ss_pred CCeEEEechhhccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeee
Confidence 4567999999988554 8889999999 334433 122333334 55677754211 111
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1085 SDLIPELQGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
..+.+.++.||-+++.++-++.++-.+||.
T Consensus 201 ~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~ 230 (327)
T TIGR01650 201 QQINQAQMDRWSIVTTLNYLEHDNEAAIVL 230 (327)
T ss_pred ecCCHHHHhheeeEeeCCCCCHHHHHHHHH
Confidence 136789999999988999999999999987
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=117.15 Aligned_cols=130 Identities=20% Similarity=0.231 Sum_probs=88.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..|+.+++.+.+....+ .....++-+|+++.... .....|.++|.
T Consensus 100 ~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~ 166 (326)
T PRK11608 100 DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLL 166 (326)
T ss_pred CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHH
Confidence 5799999999999876 7779999998654332111 11112566777754321 12345889999
Q ss_pred CCC-CeeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCe--eEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 495 GRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 495 ~R~-~~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~--l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
.|| ...|.++||.+ +|+..++ +.++.++.. ..|.. ..|++++++.|..+.. -+..|-|+++
T Consensus 167 ~~l~~~~i~lPpLReR~eDI~~L~----~~fl~~~~~---~~~~~~~~~~s~~al~~L~~y~W-------PGNvrEL~~v 232 (326)
T PRK11608 167 DRLAFDVVQLPPLRERQSDIMLMA----EHFAIQMCR---ELGLPLFPGFTERARETLLNYRW-------PGNIRELKNV 232 (326)
T ss_pred HhcCCCEEECCChhhhhhhHHHHH----HHHHHHHHH---HhCCCCCCCCCHHHHHHHHhCCC-------CcHHHHHHHH
Confidence 999 56889999986 5666666 334444332 33444 4699999999987553 3668999999
Q ss_pred HHHHHH
Q psy2392 570 MEKLLE 575 (1165)
Q Consensus 570 ie~~l~ 575 (1165)
+++.+.
T Consensus 233 l~~a~~ 238 (326)
T PRK11608 233 VERSVY 238 (326)
T ss_pred HHHHHH
Confidence 999864
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=8e-09 Score=118.54 Aligned_cols=95 Identities=16% Similarity=0.294 Sum_probs=67.5
Q ss_pred ccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcc
Q psy2392 979 KKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTT 1058 (1165)
Q Consensus 979 ~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~ 1058 (1165)
++...|+|++.+++...-...-. -....||+||++|++... .++.||+++|...
T Consensus 99 ~~~~~I~id~ir~i~~~l~~~p~-------------~~~~kVvII~~ae~m~~~-------------aaNaLLK~LEEPp 152 (314)
T PRK07399 99 KAPPQIRLEQIREIKRFLSRPPL-------------EAPRKVVVIEDAETMNEA-------------AANALLKTLEEPG 152 (314)
T ss_pred cccccCcHHHHHHHHHHHccCcc-------------cCCceEEEEEchhhcCHH-------------HHHHHHHHHhCCC
Confidence 34456777777765433221100 013469999999999776 7889999999743
Q ss_pred ceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1059 VNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1059 v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
. | +||... ++|+.++|.+.+||-+ +.|++++.+++.++|..
T Consensus 153 -~-------~---~fILi~----~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~~ 193 (314)
T PRK07399 153 -N-------G---TLILIA----PSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLKR 193 (314)
T ss_pred -C-------C---eEEEEE----CChHhCcHHHHhhceE-EecCCCCHHHHHHHHHH
Confidence 2 2 344332 3788999999999875 69999999999999983
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.7e-09 Score=119.65 Aligned_cols=70 Identities=17% Similarity=0.331 Sum_probs=57.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++|||+|+++.. .|+.||+.+|. ..++++||..+ ++|+.+.|.+++|+-
T Consensus 110 ~~kvviI~~a~~~~~~-------------a~NaLLK~LEE----------Pp~~~~~Il~t----~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 110 NKKVYIIEHADKMTAS-------------AANSLLKFLEE----------PSGGTTAILLT----ENKHQILPTILSRCQ 162 (329)
T ss_pred CceEEEeehHhhhCHH-------------HHHHHHHHhcC----------CCCCceEEEEe----CChHhCcHHHHhhce
Confidence 5679999999999866 66799999996 24566677653 478899999999987
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
+ |+|.+++.+++.++|.
T Consensus 163 ~-i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 163 V-VEFRPLPPESLIQRLQ 179 (329)
T ss_pred e-eeCCCCCHHHHHHHHH
Confidence 6 5999999999887773
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.7e-08 Score=119.46 Aligned_cols=140 Identities=21% Similarity=0.272 Sum_probs=87.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-eceeecC--ceEEEEEeCCcccC--CC-------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKT--DHILFIASGAFHLA--KP------- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~~~t--~~ilfI~~gaf~~~--~p------- 486 (1165)
..|++||||+|++.+. .|..|+..||...++. +.|...+ .+..+||+.+-... ++
T Consensus 300 ~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 300 DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 5799999999999766 6779999999877653 3343222 34566776431111 11
Q ss_pred CCCchhhhCCCCeeE-ecCCCCHHHHHHHHhhhh-------------------HhHHHHHHHHHhhcCCeeEeCHHHHHH
Q psy2392 487 SDLIPELQGRFPIRV-ELDSLSISDFTRIMTSTN-------------------VCLTKQYEALLATEGIKIEFVDDGIQR 546 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v-~~~~L~~~~l~~Il~~~~-------------------~~l~~~~~~ll~~~~i~l~~~~~a~~~ 546 (1165)
..|.|.|++||+.++ .++.++.+.-.+|+.... ...++.|.... .+.+...+++++.+.
T Consensus 367 ~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~a-r~~~~P~ls~~~~~~ 445 (509)
T smart00350 367 IDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYA-REKIKPKLSEEAAEK 445 (509)
T ss_pred cCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHH-HhcCCCCCCHHHHHH
Confidence 168999999998754 456777777666664310 11223333322 223555689999999
Q ss_pred HHHHHHhccccC--------CccCcchhHHHHHH
Q psy2392 547 LAEIAYCINERT--------ENIGARRLYTAMEK 572 (1165)
Q Consensus 547 la~~a~~~~~~~--------~~~GAR~l~~~ie~ 572 (1165)
|.+.....-... -.+..|.|..++.-
T Consensus 446 i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRl 479 (509)
T smart00350 446 LVKAYVDLRKEDSQSEARSSIPITVRQLESIIRL 479 (509)
T ss_pred HHHHHHHhcccccccccccccCcCHHHHHHHHHH
Confidence 998887643211 12356777666643
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=115.78 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=90.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceee-eeceee--cCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~-~~~~~~--~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
.+|++|||||+++.+. +|..||..|+.+.++ .+-|.. ....+++|++.+-. -..|.|+|..
T Consensus 131 ~~GvL~lDEi~~L~~~-------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~---eg~l~~~Lld 194 (337)
T TIGR02030 131 NRGILYIDEVNLLEDH-------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPE---EGELRPQLLD 194 (337)
T ss_pred cCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccc---cCCCCHHHHh
Confidence 5799999999998765 777999998755322 222221 12345566664211 1248999999
Q ss_pred CCCeeEecCCCCH-HHHHHHHhhhhH------hH---H-------HHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 496 RFPIRVELDSLSI-SDFTRIMTSTNV------CL---T-------KQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 496 R~~~~v~~~~L~~-~~l~~Il~~~~~------~l---~-------~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
||.+.+.+..+.. ++..+|+..... .. . ..........=-.+.+++++++++++.+....
T Consensus 195 Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~--- 271 (337)
T TIGR02030 195 RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELD--- 271 (337)
T ss_pred hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHC---
Confidence 9999999999986 777788764110 00 0 00011111112346789999999999997742
Q ss_pred CccCcchhHHHHHHHHHHhhcccCCCeeEEcccccccc
Q psy2392 559 ENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSR 596 (1165)
Q Consensus 559 ~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~ 596 (1165)
.-|=|....++.-.-.-...+ ++ -.|+.+.|+..
T Consensus 272 -~~s~Ra~i~l~raArA~Aal~--GR-~~V~~dDv~~~ 305 (337)
T TIGR02030 272 -VDGLRGELTLNRAAKALAAFE--GR-TEVTVDDIRRV 305 (337)
T ss_pred -CCCCcHHHHHHHHHHHHHHHc--CC-CCCCHHHHHHH
Confidence 114465554444332222221 11 24566666543
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-09 Score=124.00 Aligned_cols=138 Identities=17% Similarity=0.310 Sum_probs=91.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC---CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~---~l~pel~~ 495 (1165)
+..+++||||+.+.... ..|..|..++.... +....++|++ . ..|. .+.+.|.+
T Consensus 206 ~~dvLiIDDiq~l~~k~-----------~~~e~lf~l~N~~~--------~~~k~iIlts-d---~~P~~l~~l~~rL~S 262 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKE-----------KTNEIFFTIFNNFI--------ENDKQLFFSS-D---KSPELLNGFDNRLIT 262 (450)
T ss_pred cCCEEEEeccccccCCH-----------HHHHHHHHHHHHHH--------HcCCcEEEEC-C---CCHHHHhhccHHHHH
Confidence 45699999999885331 24556666554211 1111223332 1 1233 35688999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..+.|++|+.+++.+||. ..++..|+.+.++++++++|++.+ +..+|.|..++.++
T Consensus 263 R~~~Gl~~~L~~pd~e~r~~iL~-----------~~~~~~gl~~~l~~evl~~Ia~~~--------~gd~R~L~gaL~~l 323 (450)
T PRK14087 263 RFNMGLSIAIQKLDNKTATAIIK-----------KEIKNQNIKQEVTEEAINFISNYY--------SDDVRKIKGSVSRL 323 (450)
T ss_pred HHhCCceeccCCcCHHHHHHHHH-----------HHHHhcCCCCCCCHHHHHHHHHcc--------CCCHHHHHHHHHHH
Confidence 984 888999999999999994 223344655689999999999987 57899999999999
Q ss_pred HHHhhcccCCCeeEEcccccccccccC
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
+......... ..||.+.|++.+.+.
T Consensus 324 ~~~a~~~~~~--~~it~~~v~~~l~~~ 348 (450)
T PRK14087 324 NFWSQQNPEE--KIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHhcccCC--CCCCHHHHHHHHhhc
Confidence 7443322111 237888887777643
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.5e-09 Score=122.15 Aligned_cols=70 Identities=20% Similarity=0.399 Sum_probs=56.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
.-||+|||+|.+... .|+.||+.+|... .+.+||.. +.+|+.+.|.+++||..
T Consensus 142 ~kVviIDead~m~~~-------------aanaLLK~LEepp----------~~~~~IL~----t~~~~~llpti~SRc~~ 194 (365)
T PRK07471 142 WRVVIVDTADEMNAN-------------AANALLKVLEEPP----------ARSLFLLV----SHAPARLLPTIRSRCRK 194 (365)
T ss_pred CEEEEEechHhcCHH-------------HHHHHHHHHhcCC----------CCeEEEEE----ECCchhchHHhhccceE
Confidence 459999999999876 7889999999632 33455553 24777899999999975
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+|+.+++.++|.+
T Consensus 195 -i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 195 -LRLRPLAPEDVIDALAA 211 (365)
T ss_pred -EECCCCCHHHHHHHHHH
Confidence 69999999999999984
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=123.04 Aligned_cols=131 Identities=18% Similarity=0.224 Sum_probs=88.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeecee--ecCceEEEEEeCCccc---CCCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~--~~t~~ilfI~~gaf~~---~~p~~l~pel 493 (1165)
.+|.+||||||.+... +|..|+.+++.+.+.. .|. ....++-+|+++.... .....|.+.|
T Consensus 281 ~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~-~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL 346 (509)
T PRK05022 281 DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQR-VGSDRSLRVDVRVIAATNRDLREEVRAGRFRADL 346 (509)
T ss_pred CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEee-CCCCcceecceEEEEecCCCHHHHHHcCCccHHH
Confidence 5889999999999866 7789999997655421 111 1122456777754321 2234588999
Q ss_pred hCCCCe-eEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 494 QGRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 494 ~~R~~~-~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
..|+.. .|.++||.+ +|+..++ ..++.++...+.. -.+.|++++++.|..+.. -+..|-|+++|
T Consensus 347 ~~rl~~~~i~lPpLreR~eDI~~L~----~~fl~~~~~~~~~--~~~~~s~~a~~~L~~y~W-------PGNvrEL~~~i 413 (509)
T PRK05022 347 YHRLSVFPLSVPPLRERGDDVLLLA----GYFLEQNRARLGL--RSLRLSPAAQAALLAYDW-------PGNVRELEHVI 413 (509)
T ss_pred HhcccccEeeCCCchhchhhHHHHH----HHHHHHHHHHcCC--CCCCCCHHHHHHHHhCCC-------CCcHHHHHHHH
Confidence 999864 488999986 4666655 3444444332211 346899999999987553 46789999999
Q ss_pred HHHHHH
Q psy2392 571 EKLLEE 576 (1165)
Q Consensus 571 e~~l~~ 576 (1165)
++.+..
T Consensus 414 ~ra~~~ 419 (509)
T PRK05022 414 SRAALL 419 (509)
T ss_pred HHHHHh
Confidence 998653
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=115.78 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=47.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
+..||+|||+|+++.. .|+.||+.+|-. ..+..||... +.|+.+.|.+++|+-
T Consensus 109 ~~kviiidead~mt~~-------------A~nallk~lEep----------~~~~~~il~~----n~~~~il~tI~SRc~ 161 (325)
T COG0470 109 GYKVVIIDEADKLTED-------------AANALLKTLEEP----------PKNTRFILIT----NDPSKILPTIRSRCQ 161 (325)
T ss_pred CceEEEeCcHHHHhHH-------------HHHHHHHHhccC----------CCCeEEEEEc----CChhhccchhhhcce
Confidence 5679999999999975 677999999863 4455566653 478999999999987
Q ss_pred eeEecCCC
Q psy2392 499 IRVELDSL 506 (1165)
Q Consensus 499 ~~v~~~~L 506 (1165)
+ +.|+++
T Consensus 162 ~-i~f~~~ 168 (325)
T COG0470 162 R-IRFKPP 168 (325)
T ss_pred e-eecCCc
Confidence 6 589883
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.8e-09 Score=112.49 Aligned_cols=82 Identities=12% Similarity=0.107 Sum_probs=58.4
Q ss_pred hhhhCCCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 491 PELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 491 pel~~R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
|.|++|+. ..+++++|+.+++.+++. +.+...| +.++++++++|++.+ ...+|.|.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~-----------k~~~~~~--l~l~~ev~~~L~~~~--------~~d~r~l~~ 188 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIF-----------KHFSISS--VTISRQIIDFLLVNL--------PREYSKIIE 188 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHc--------cCCHHHHHH
Confidence 99999987 357999999999888884 1122234 578999999999988 568999999
Q ss_pred HHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 569 AMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 569 ~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
+++++-... .. .. ..||...+++.+
T Consensus 189 ~l~~l~~~~-~~-~~--~~it~~~~~~~l 213 (214)
T PRK06620 189 ILENINYFA-LI-SK--RKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHH-HH-cC--CCCCHHHHHHHh
Confidence 999864221 11 11 236666665543
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2e-08 Score=122.92 Aligned_cols=116 Identities=18% Similarity=0.254 Sum_probs=79.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccC--ceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t--~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++...+ ++.|.-.+ -++-+||+..... .....|.+.|
T Consensus 281 ~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~-~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL 346 (509)
T PRK05022 281 DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEI-QRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADL 346 (509)
T ss_pred CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCE-eeCCCCcceecceEEEEecCCCHHHHHHcCCccHHH
Confidence 6899999999999876 99999999986554 22232222 2567777765332 2335688999
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+. +.|+++||-+ +|+..+.. ..+.++..-+.. -.+.|+++|++.|..+..-.
T Consensus 347 ~~rl~~~~i~lPpLreR~eDI~~L~~----~fl~~~~~~~~~--~~~~~s~~a~~~L~~y~WPG 404 (509)
T PRK05022 347 YHRLSVFPLSVPPLRERGDDVLLLAG----YFLEQNRARLGL--RSLRLSPAAQAALLAYDWPG 404 (509)
T ss_pred HhcccccEeeCCCchhchhhHHHHHH----HHHHHHHHHcCC--CCCCCCHHHHHHHHhCCCCC
Confidence 99986 4488999976 57766665 555555443322 23589999999998766555
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-08 Score=128.43 Aligned_cols=130 Identities=15% Similarity=0.267 Sum_probs=88.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+|||||+.+... +|..||.+++.+.+..-.+ ....-++-+|+++.... .....|.+.|.
T Consensus 416 ~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~ 482 (638)
T PRK11388 416 HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482 (638)
T ss_pred CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHh
Confidence 5899999999999876 7779999998765532111 01112455777754321 12346888888
Q ss_pred CCCC-eeEecCCCCHH--HHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 495 GRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~~--~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
.||. ..|.++||-+- |+..++ ..++.++.. ..+..+.|++++++.|..+.. .+..|-|+++++
T Consensus 483 ~~l~~~~i~lPpLreR~~Di~~L~----~~~l~~~~~---~~~~~~~~s~~a~~~L~~y~W-------PGNvreL~~~l~ 548 (638)
T PRK11388 483 YALHAFEITIPPLRMRREDIPALV----NNKLRSLEK---RFSTRLKIDDDALARLVSYRW-------PGNDFELRSVIE 548 (638)
T ss_pred hhhceeEEeCCChhhhhhHHHHHH----HHHHHHHHH---HhCCCCCcCHHHHHHHHcCCC-------CChHHHHHHHHH
Confidence 8875 56788999874 677766 344444433 234456899999999987553 366899999999
Q ss_pred HHHH
Q psy2392 572 KLLE 575 (1165)
Q Consensus 572 ~~l~ 575 (1165)
+++.
T Consensus 549 ~~~~ 552 (638)
T PRK11388 549 NLAL 552 (638)
T ss_pred HHHH
Confidence 9764
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-09 Score=115.02 Aligned_cols=44 Identities=48% Similarity=0.758 Sum_probs=37.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
++|+||+.+|+++..+.... +|+||+||||||||++|+++...|
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~----------------h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG----------------HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC------------------EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcCC----------------CCeEEECCCCCCHHHHHHHHHHhC
Confidence 37999999999999988653 799999999999999999999988
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.8e-08 Score=116.18 Aligned_cols=61 Identities=31% Similarity=0.441 Sum_probs=45.1
Q ss_pred HHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC--CCceEEeccccc
Q psy2392 178 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFT 255 (1165)
Q Consensus 178 ~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~ 255 (1165)
...++ ++++-++.++.+..++... ++++|+||||||||++|+.+|..+. ..+.++++..++
T Consensus 171 ~~~l~-d~~i~e~~le~l~~~L~~~----------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH 233 (459)
T PRK11331 171 EDALN-DLFIPETTIETILKRLTIK----------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH 233 (459)
T ss_pred HHHhh-cccCCHHHHHHHHHHHhcC----------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec
Confidence 33455 5677777777777766532 7999999999999999999999984 345566665554
|
|
| >KOG1942|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-07 Score=104.29 Aligned_cols=103 Identities=19% Similarity=0.349 Sum_probs=65.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
+|++||||++-+--.+.. .|-..+|.....+ ...-|+.=.-.--|.--...|..+-|.|+.|+-|
T Consensus 297 PGVLFIDEVhMLDiEcFT-------------yL~kalES~iaPi--vifAsNrG~~~irGt~d~~sPhGip~dllDRl~I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFT-------------YLHKALESPIAPI--VIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLI 361 (456)
T ss_pred CcceEeeehhhhhhHHHH-------------HHHHHhcCCCCce--EEEecCCcceeecCCcCCCCCCCCCHHHhhheeE
Confidence 699999999987554322 3444455322111 0000000000011333345688899999999887
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.-.++++++..+|++ ...+.||+ .++++|+..++.+.
T Consensus 362 -irt~~y~~~e~r~Ii~-----------~Ra~~E~l--~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 362 -IRTLPYDEEEIRQIIK-----------IRAQVEGL--QVEEEALDLLAEIG 399 (456)
T ss_pred -EeeccCCHHHHHHHHH-----------HHHhhhcc--eecHHHHHHHHhhc
Confidence 4788999999999998 33456676 78899999998843
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.6e-08 Score=109.77 Aligned_cols=98 Identities=16% Similarity=0.292 Sum_probs=65.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---Cchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~g 1093 (1165)
+.-+++|||||.+..... -|..|+.++.... .....+|+++. ..|++ +.|.|++
T Consensus 93 ~~dlLiIDDi~~l~~~~~-----------~~~~lf~l~n~~~---------~~~~~vI~ts~---~~p~~l~~~~~dL~S 149 (233)
T PRK08727 93 GRSLVALDGLESIAGQRE-----------DEVALFDFHNRAR---------AAGITLLYTAR---QMPDGLALVLPDLRS 149 (233)
T ss_pred cCCEEEEeCcccccCChH-----------HHHHHHHHHHHHH---------HcCCeEEEECC---CChhhhhhhhHHHHH
Confidence 345899999999875422 3455665554211 11122334433 24544 4799999
Q ss_pred cC--CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1094 RF--PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1094 R~--~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|| ...++|++++.+++.+||. .....+|+ .++++++.+|++.+.
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~-----------~~a~~~~l--~l~~e~~~~La~~~~ 195 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLR-----------ERAQRRGL--ALDEAAIDWLLTHGE 195 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhCC
Confidence 95 5678999999999999999 22222454 789999999998765
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-08 Score=113.24 Aligned_cols=62 Identities=16% Similarity=0.243 Sum_probs=50.4
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCC-------CceEEec
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA-------PFIKIEA 251 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~-------~~i~ld~ 251 (1165)
+++++|+++++..+...+... ..|+.. ...-++|+||||||||++|++||+.++. +++.+.+
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~--a~g~~~------~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSA--AQGLEE------RKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred chhccCcHHHHHHHHHHHHHH--HhcCCC------CCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 448999999999999888764 222222 1367899999999999999999999965 9999988
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=122.00 Aligned_cols=127 Identities=23% Similarity=0.250 Sum_probs=85.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece--eecCceEEEEEeCCccc---CCCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHL---AKPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~--~~~t~~ilfI~~gaf~~---~~p~~l~pel 493 (1165)
.+|.+|||||+.+... +|..||.+++.+.+.. .| ....-++-+|++.+... .....|.+.|
T Consensus 307 ~gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r-~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL 372 (526)
T TIGR02329 307 HRGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVR-VGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDL 372 (526)
T ss_pred CCceEEecChHhCCHH-------------HHHHHHHHHhcCcEEe-cCCCceeeecceEEeccCCCHHHHhhhcchhHHH
Confidence 5899999999999876 7789999998665432 11 11122445677654332 2234588899
Q ss_pred hCCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHH-------HHHHHHhccccCCccCc
Q psy2392 494 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR-------LAEIAYCINERTENIGA 563 (1165)
Q Consensus 494 ~~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~-------la~~a~~~~~~~~~~GA 563 (1165)
..|+. ..|.++||.+ +|+..++ ..++.++... .+ +.+++++++. |.. |++ .+..
T Consensus 373 ~~rL~~~~I~lPPLReR~eDI~~L~----~~fl~~~~~~---~~--~~~~~~a~~~~~~~~~~L~~--y~W-----PGNv 436 (526)
T TIGR02329 373 FYRLSILRIALPPLRERPGDILPLA----AEYLVQAAAA---LR--LPDSEAAAQVLAGVADPLQR--YPW-----PGNV 436 (526)
T ss_pred HHhcCCcEEeCCCchhchhHHHHHH----HHHHHHHHHH---cC--CCCCHHHHHHhHHHHHHHHh--CCC-----CchH
Confidence 99985 7889999987 5777766 3444444322 23 3589999887 543 332 4678
Q ss_pred chhHHHHHHHHH
Q psy2392 564 RRLYTAMEKLLE 575 (1165)
Q Consensus 564 R~l~~~ie~~l~ 575 (1165)
|-|++++++++-
T Consensus 437 rEL~nvier~~i 448 (526)
T TIGR02329 437 RELRNLVERLAL 448 (526)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.1e-08 Score=119.71 Aligned_cols=130 Identities=25% Similarity=0.277 Sum_probs=82.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+|||||+.+... +|..||.+++.+.+..-.+ ....-++-+|++++... .....|.+.|.
T Consensus 322 ~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~ 388 (538)
T PRK15424 322 HGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLF 388 (538)
T ss_pred CCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHH
Confidence 5899999999999876 7779999998765532111 11123455777754321 12234788888
Q ss_pred CCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHH-----HHhccccCCccCcchh
Q psy2392 495 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEI-----AYCINERTENIGARRL 566 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~-----a~~~~~~~~~~GAR~l 566 (1165)
.|+. ..|.++||.+ +|+..++ ..++.++.. ..+. .++++++..+.+. .|++ .+..|-|
T Consensus 389 yrL~~~~I~lPPLReR~eDI~~L~----~~fl~~~~~---~~~~--~~~~~a~~~~~~a~~~L~~y~W-----PGNvREL 454 (538)
T PRK15424 389 YRLSILRLQLPPLRERVADILPLA----ESFLKQSLA---ALSA--PFSAALRQGLQQCETLLLHYDW-----PGNVREL 454 (538)
T ss_pred HHhcCCeecCCChhhchhHHHHHH----HHHHHHHHH---HcCC--CCCHHHHHhhHHHHHHHHhCCC-----CchHHHH
Confidence 8875 6778899976 5666666 344444322 1233 4778777433221 2333 4678999
Q ss_pred HHHHHHHHH
Q psy2392 567 YTAMEKLLE 575 (1165)
Q Consensus 567 ~~~ie~~l~ 575 (1165)
++++++++-
T Consensus 455 ~nvier~~i 463 (538)
T PRK15424 455 RNLMERLAL 463 (538)
T ss_pred HHHHHHHHH
Confidence 999999864
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-08 Score=106.72 Aligned_cols=116 Identities=24% Similarity=0.359 Sum_probs=74.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...+++||.||.+... ...|..|..+++.-. .....+++++. ..-..-..+.|.|.+||.
T Consensus 97 ~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~--------~~~k~li~ts~-~~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLI--------ESGKQLILTSD-RPPSELSGLLPDLRSRLS 156 (219)
T ss_dssp TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHH--------HTTSEEEEEES-S-TTTTTTS-HHHHHHHH
T ss_pred cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHH--------hhCCeEEEEeC-CCCccccccChhhhhhHh
Confidence 4679999999999754 236778887776421 22233444442 221222236789999975
Q ss_pred --eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 --~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
..+++++|+.++..+||. +.+...|+ .++++++++|++.. ....|.|..+|.++..
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~-----------~~a~~~~~--~l~~~v~~~l~~~~--------~~~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQ-----------KKAKERGI--ELPEEVIEYLARRF--------RRDVRELEGALNRLDA 214 (219)
T ss_dssp CSEEEEE----HHHHHHHHH-----------HHHHHTT----S-HHHHHHHHHHT--------TSSHHHHHHHHHHHHH
T ss_pred hcchhhcCCCCHHHHHHHHH-----------HHHHHhCC--CCcHHHHHHHHHhh--------cCCHHHHHHHHHHHHH
Confidence 588999999999999994 33445565 58999999999977 3467888888888754
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=99.25 Aligned_cols=55 Identities=42% Similarity=0.688 Sum_probs=43.1
Q ss_pred ecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 186 IGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 186 iGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
+|++.++..+...+... ...+++++||||||||++++.+++.+ +.+++.+++.++
T Consensus 1 ~~~~~~~~~i~~~~~~~--------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP--------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC--------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 36677777776666431 13689999999999999999999998 778888887664
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-08 Score=123.15 Aligned_cols=98 Identities=16% Similarity=0.344 Sum_probs=66.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---Cchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~g 1093 (1165)
+..+++|||||.+.+.. +.|.+|+.++..-.- ....++|++- ..|.+ +.|.|.+
T Consensus 211 ~~dlLiiDDi~~l~~~~-----------~~~~~l~~~~n~l~~--------~~~~iiits~----~~p~~l~~l~~~l~S 267 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKE-----------RTQEEFFHTFNALHE--------AGKQIVLTSD----RPPKELPGLEERLRS 267 (450)
T ss_pred cCCEEEEehhhhhcCCH-----------HHHHHHHHHHHHHHH--------CCCcEEEECC----CCHHHHHHHHHHHHh
Confidence 34599999999996541 357777776653111 1112333332 13433 6689999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
||. ..++|++++.+++.+||+ ..+...|+ .++++++++||+.+.
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~-----------~~~~~~~~--~l~~e~l~~ia~~~~ 313 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILK-----------KKAEEEGI--DLPDEVLEFIAKNIT 313 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHcCcC
Confidence 995 678999999999999999 22333454 789999999987543
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.1e-08 Score=114.89 Aligned_cols=64 Identities=27% Similarity=0.423 Sum_probs=49.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
+.-||+|||+|++... .|+.||+.+|-...+| .||+.. +.|+.++|.+++||-
T Consensus 109 ~~kviiidead~mt~~-------------A~nallk~lEep~~~~----------~~il~~----n~~~~il~tI~SRc~ 161 (325)
T COG0470 109 GYKVVIIDEADKLTED-------------AANALLKTLEEPPKNT----------RFILIT----NDPSKILPTIRSRCQ 161 (325)
T ss_pred CceEEEeCcHHHHhHH-------------HHHHHHHHhccCCCCe----------EEEEEc----CChhhccchhhhcce
Confidence 3459999999999985 8889999999755444 444443 479999999999988
Q ss_pred eEEEcCCCCHHH
Q psy2392 1097 IRVELDSLSISD 1108 (1165)
Q Consensus 1097 i~v~l~~l~~~~ 1108 (1165)
+ +.|++.+...
T Consensus 162 ~-i~f~~~~~~~ 172 (325)
T COG0470 162 R-IRFKPPSRLE 172 (325)
T ss_pred e-eecCCchHHH
Confidence 7 5899844433
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=98.80 E-value=3e-08 Score=120.13 Aligned_cols=82 Identities=20% Similarity=0.340 Sum_probs=58.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeee--ccCceEEEEecCC------CCC------
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGI--IKTDHILFIASGA------FHL------ 1081 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~--~~t~~ilfI~~ga------f~~------ 1081 (1165)
++|++|||||+++... +|..|+..||...+. .+.|. ....++.+|++.+ |..
T Consensus 295 ~~GvLfLDEi~e~~~~-------------~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~ 361 (499)
T TIGR00368 295 HNGVLFLDELPEFKRS-------------VLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCR 361 (499)
T ss_pred CCCeEecCChhhCCHH-------------HHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCccccc
Confidence 6899999999998765 999999999987654 23331 1234667777654 211
Q ss_pred CCC-------CCCchhhhccCCeEEEcCCCCHHHHHH
Q psy2392 1082 AKP-------SDLIPELQGRFPIRVELDSLSISDFTR 1111 (1165)
Q Consensus 1082 ~~p-------~dl~pel~gR~~i~v~l~~l~~~~l~~ 1111 (1165)
+.| ..+.++|+.||.+++++++++.++|.+
T Consensus 362 c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~ 398 (499)
T TIGR00368 362 CSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLS 398 (499)
T ss_pred CCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhc
Confidence 011 147799999999999999998887743
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-09 Score=123.43 Aligned_cols=44 Identities=50% Similarity=0.720 Sum_probs=40.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+|+||++||+++..+.... +|+||+||||||||++|+.+...|
T Consensus 179 ~DV~GQ~~AKrAleiAAAGg----------------HnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGG----------------HNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcC----------------CcEEEecCCCCchHHhhhhhcccC
Confidence 48999999999999887653 899999999999999999999888
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-09 Score=104.43 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
|+||+|+||+|||++|+++|+.++..|.+++++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tp 34 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTP 34 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--T
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecC
Confidence 6899999999999999999999999999998863
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.8e-08 Score=112.95 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=78.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee--ccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~--~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++.+.+. +.|. ....++-+||+..-.. .....|.++|
T Consensus 100 ~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~-~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL 165 (326)
T PRK11608 100 DGGTLFLDELATAPML-------------VQEKLLRVIEYGELE-RVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADL 165 (326)
T ss_pred CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEE-eCCCCceeeccEEEEEeCchhHHHHHHcCCchHHH
Confidence 6799999999999876 899999999865432 1221 1112466788765322 1234678999
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCc--eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK--IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~--l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|| ...|.++||-+ +|+..++. ..+.++.. ..|.. ..|+++|++.|.....-.
T Consensus 166 ~~~l~~~~i~lPpLReR~eDI~~L~~----~fl~~~~~---~~~~~~~~~~s~~al~~L~~y~WPG 224 (326)
T PRK11608 166 LDRLAFDVVQLPPLRERQSDIMLMAE----HFAIQMCR---ELGLPLFPGFTERARETLLNYRWPG 224 (326)
T ss_pred HHhcCCCEEECCChhhhhhhHHHHHH----HHHHHHHH---HhCCCCCCCCCHHHHHHHHhCCCCc
Confidence 9999 56889999975 57776666 44554433 33443 468999999887665544
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.6e-08 Score=119.86 Aligned_cols=131 Identities=18% Similarity=0.279 Sum_probs=88.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec-eeecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
..|.|||||||.+... +|..|+.+++.+.+..-. .....-++-+|+++.... .....|.+.|.
T Consensus 298 ~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~ 364 (520)
T PRK10820 298 NGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLY 364 (520)
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 5789999999999876 777899998765432210 011123566788764321 12234888999
Q ss_pred CCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCC-eeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i-~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. ..|.++||.+ +|+..++ ..++.++.. ..|. ...+++++++.|..+.. .+..|-|++++
T Consensus 365 ~rL~~~~i~lPpLreR~~Di~~L~----~~fl~~~~~---~~g~~~~~ls~~a~~~L~~y~W-------PGNvreL~nvl 430 (520)
T PRK10820 365 YRLNVLTLNLPPLRDRPQDIMPLT----ELFVARFAD---EQGVPRPKLAADLNTVLTRYGW-------PGNVRQLKNAI 430 (520)
T ss_pred hhcCeeEEeCCCcccChhHHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHhcCCC-------CCHHHHHHHHH
Confidence 9975 6788999987 4666555 344444433 3343 34799999999976543 46789999999
Q ss_pred HHHHHH
Q psy2392 571 EKLLEE 576 (1165)
Q Consensus 571 e~~l~~ 576 (1165)
++++..
T Consensus 431 ~~a~~~ 436 (520)
T PRK10820 431 YRALTQ 436 (520)
T ss_pred HHHHHh
Confidence 998753
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-08 Score=120.39 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=73.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..||.+++...+. +.|.- ..-++-+|++..-.. .....|.++|
T Consensus 307 ~gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~-r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL 372 (526)
T TIGR02329 307 HRGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVV-RVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDL 372 (526)
T ss_pred CCceEEecChHhCCHH-------------HHHHHHHHHhcCcEE-ecCCCceeeecceEEeccCCCHHHHhhhcchhHHH
Confidence 6899999999999877 999999999876543 23321 122456777765332 2234578889
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHH
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR 1144 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ 1144 (1165)
-.||. +.++++||-+ +|+..+.. ..+.++... .++ .|+++|++.
T Consensus 373 ~~rL~~~~I~lPPLReR~eDI~~L~~----~fl~~~~~~---~~~--~~~~~a~~~ 419 (526)
T TIGR02329 373 FYRLSILRIALPPLRERPGDILPLAA----EYLVQAAAA---LRL--PDSEAAAQV 419 (526)
T ss_pred HHhcCCcEEeCCCchhchhHHHHHHH----HHHHHHHHH---cCC--CCCHHHHHH
Confidence 89985 7889999976 67877766 555555432 233 689999887
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-08 Score=96.50 Aligned_cols=54 Identities=43% Similarity=0.682 Sum_probs=42.0
Q ss_pred chHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 785 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 785 GQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
|++.++..+...+... ...+++++||||||||++++.+++.+ +.+++.++++++
T Consensus 2 ~~~~~~~~i~~~~~~~--------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 2 GQEEAIEALREALELP--------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL 58 (151)
T ss_pred chHHHHHHHHHHHhCC--------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence 5666666766665421 13689999999999999999999998 778888887664
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-08 Score=121.90 Aligned_cols=134 Identities=22% Similarity=0.280 Sum_probs=87.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~ 495 (1165)
+..+++|||++.+... .+.|..|+.++..-. .....++|++. ..|.. +.+.+.+
T Consensus 194 ~~dvLlIDDi~~l~~~-----------~~~q~elf~~~n~l~--------~~~k~iIitsd----~~p~~l~~l~~rL~S 250 (440)
T PRK14088 194 KVDVLLIDDVQFLIGK-----------TGVQTELFHTFNELH--------DSGKQIVICSD----REPQKLSEFQDRLVS 250 (440)
T ss_pred cCCEEEEechhhhcCc-----------HHHHHHHHHHHHHHH--------HcCCeEEEECC----CCHHHHHHHHHHHhh
Confidence 3569999999988543 124556665553211 11122333331 23443 6688899
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..|.|++++.+.+..||+ +.++.++ +.++++++++|++.. ...+|.|..++.++
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~-----------~~~~~~~--~~l~~ev~~~Ia~~~--------~~~~R~L~g~l~~l 309 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIAR-----------KMLEIEH--GELPEEVLNFVAENV--------DDNLRRLRGAIIKL 309 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHhcc--------ccCHHHHHHHHHHH
Confidence 984 678999999999999994 1223334 467999999999877 45789999999988
Q ss_pred HHHhhcccCCCeeEEcccccccccccC
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
.......- -.||.+.+++.+.++
T Consensus 310 ~~~~~~~~----~~it~~~a~~~L~~~ 332 (440)
T PRK14088 310 LVYKETTG----EEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHhC----CCCCHHHHHHHHHHH
Confidence 65433221 237777777777654
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.5e-08 Score=122.51 Aligned_cols=130 Identities=18% Similarity=0.281 Sum_probs=87.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec-eeecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|++|||||+.+... +|..|+..++.+.+..-. ......++-+|++++... .....|.++|.
T Consensus 470 ~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~ 536 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLY 536 (686)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHH
Confidence 5799999999999766 777999998765432111 111234566788765432 12345888888
Q ss_pred CCCCe-eEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCee-EeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~~-~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l-~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+.. .|.++||.+ +|+..++ ..++.++.. ..|..+ .|++++++.|..+.. .+..|-|++++
T Consensus 537 ~~l~~~~i~lPpLreR~~Di~~L~----~~~l~~~~~---~~~~~~~~~s~~al~~L~~y~W-------PGNvrEL~~~i 602 (686)
T PRK15429 537 YRLNVFPIHLPPLRERPEDIPLLV----KAFTFKIAR---RMGRNIDSIPAETLRTLSNMEW-------PGNVRELENVI 602 (686)
T ss_pred hccCeeEEeCCChhhhHhHHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHHhCCC-------CCcHHHHHHHH
Confidence 88764 578899876 5565555 334444332 335555 599999999976543 46789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 603 ~~a~~ 607 (686)
T PRK15429 603 ERAVL 607 (686)
T ss_pred HHHHH
Confidence 99874
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.2e-08 Score=104.36 Aligned_cols=61 Identities=30% Similarity=0.554 Sum_probs=44.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. .|+.||..||. ...++.||... ++++.+.|.++||+-
T Consensus 102 ~~KviiI~~ad~l~~~-------------a~NaLLK~LEe----------pp~~~~fiL~t----~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEE-------------AQNALLKTLEE----------PPENTYFILIT----NNPSKILPTIRSRCQ 154 (162)
T ss_dssp SSEEEEEETGGGS-HH-------------HHHHHHHHHHS----------TTTTEEEEEEE----S-GGGS-HHHHTTSE
T ss_pred CceEEEeehHhhhhHH-------------HHHHHHHHhcC----------CCCCEEEEEEE----CChHHChHHHHhhce
Confidence 5779999999999977 77899999996 34566677663 678899999999986
Q ss_pred eeEecCCCC
Q psy2392 499 IRVELDSLS 507 (1165)
Q Consensus 499 ~~v~~~~L~ 507 (1165)
. +.|++|+
T Consensus 155 ~-i~~~~ls 162 (162)
T PF13177_consen 155 V-IRFRPLS 162 (162)
T ss_dssp E-EEE----
T ss_pred E-EecCCCC
Confidence 5 5888775
|
... |
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.2e-08 Score=116.92 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=80.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeeccC--ceEEEEecCC-----CCCCCC----
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIKT--DHILFIASGA-----FHLAKP---- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~~t--~~ilfI~~ga-----f~~~~p---- 1084 (1165)
+.|++||||||++... .|..|+..||...++ .|.|...+ .+..+||+.. |..+++
T Consensus 300 ~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n 366 (509)
T smart00350 300 DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEEN 366 (509)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhc
Confidence 6799999999999876 889999999987765 34443322 2355666643 111111
Q ss_pred CCCchhhhccCCeEE-EcCCCCHHHHHHHHhhh-------------------HHHhHHHHHHHHhhcCCceEeCHHHHHH
Q psy2392 1085 SDLIPELQGRFPIRV-ELDSLSISDFTRIMTST-------------------NVCLTKQYEALLATEGIKIEFVDDGIQR 1144 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v-~l~~l~~~~l~~il~~~-------------------~~~l~~q~~~l~~~egv~l~~~~~ai~~ 1144 (1165)
..|-|.|++||.+.+ -++..+.+.-.+|++.. ....++.|....+. .+...+++++.+.
T Consensus 367 ~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~-~~~P~ls~~~~~~ 445 (509)
T smart00350 367 IDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYARE-KIKPKLSEEAAEK 445 (509)
T ss_pred cCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHh-cCCCCCCHHHHHH
Confidence 268899999997654 45677777666666521 12234555544443 3555689999999
Q ss_pred HHHHHhcc
Q psy2392 1145 LAEIAYCI 1152 (1165)
Q Consensus 1145 ia~~a~~~ 1152 (1165)
|.....+.
T Consensus 446 i~~~y~~~ 453 (509)
T smart00350 446 LVKAYVDL 453 (509)
T ss_pred HHHHHHHh
Confidence 98877664
|
|
| >KOG0990|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-09 Score=118.55 Aligned_cols=94 Identities=22% Similarity=0.309 Sum_probs=72.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+..|++||.|..+.. .|++|...+|..+++|+|- ..++.|..++|.+|+||.
T Consensus 131 ~fKlvILDEADaMT~~-------------AQnALRRviek~t~n~rF~--------------ii~n~~~ki~pa~qsRct 183 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-------------AQNALRRVIEKYTANTRFA--------------TISNPPQKIHPAQQSRCT 183 (360)
T ss_pred ceeEEEecchhHhhHH-------------HHHHHHHHHHHhccceEEE--------------EeccChhhcCchhhcccc
Confidence 4568999999999988 8999999999877777652 223567889999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
- +.|.||+..+...++. ..++.+-. ..+++++..++..+-.
T Consensus 184 r-frf~pl~~~~~~~r~s-----------hi~e~e~~--~~~~~~~~a~~r~s~g 224 (360)
T KOG0990|consen 184 R-FRFAPLTMAQQTERQS-----------HIRESEQK--ETNPEGYSALGRLSVG 224 (360)
T ss_pred c-CCCCCCChhhhhhHHH-----------HHHhcchh--hcCHHHHHHHHHHhHH
Confidence 4 6999999998887777 44444444 5677887777766543
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.2e-08 Score=117.80 Aligned_cols=97 Identities=16% Similarity=0.333 Sum_probs=65.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhcc
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQGR 1094 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~gR 1094 (1165)
..+++|||||.+... ++.|..|+.+++.-.-. ...++| ++. ..|+ .+.|.|.+|
T Consensus 200 ~dlLiiDDi~~l~~~-----------~~~~~~l~~~~n~~~~~--------~~~iii-ts~---~~p~~l~~l~~~l~SR 256 (405)
T TIGR00362 200 VDLLLIDDIQFLAGK-----------ERTQEEFFHTFNALHEN--------GKQIVL-TSD---RPPKELPGLEERLRSR 256 (405)
T ss_pred CCEEEEehhhhhcCC-----------HHHHHHHHHHHHHHHHC--------CCCEEE-ecC---CCHHHHhhhhhhhhhh
Confidence 459999999998653 23677788777631111 111222 322 1233 356889999
Q ss_pred CC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1095 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1095 ~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|. ..|+|++++.++...||+ ..++..++ .++++++.+||+...
T Consensus 257 l~~g~~v~i~~pd~~~r~~il~-----------~~~~~~~~--~l~~e~l~~ia~~~~ 301 (405)
T TIGR00362 257 FEWGLVVDIEPPDLETRLAILQ-----------KKAEEEGL--ELPDEVLEFIAKNIR 301 (405)
T ss_pred ccCCeEEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhcC
Confidence 95 678999999999999999 23333454 778999999987543
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.6e-08 Score=119.08 Aligned_cols=115 Identities=18% Similarity=0.294 Sum_probs=78.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee--ccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~--~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++...+.. .|. ...-++-+||++.-.. .....|.+.|
T Consensus 298 ~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~-~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL 363 (520)
T PRK10820 298 NGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRR-VGEDHEVHVDVRVICATQKNLVELVQKGEFREDL 363 (520)
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCccc-CCCCcceeeeeEEEEecCCCHHHHHHcCCccHHH
Confidence 5799999999999876 8999999998654321 221 1234567888875332 1223477889
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCC-ceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv-~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+. ..++++||.+ +|+..++. ..+.++.. ..|. ...|+++|++.|..+....
T Consensus 364 ~~rL~~~~i~lPpLreR~~Di~~L~~----~fl~~~~~---~~g~~~~~ls~~a~~~L~~y~WPG 421 (520)
T PRK10820 364 YYRLNVLTLNLPPLRDRPQDIMPLTE----LFVARFAD---EQGVPRPKLAADLNTVLTRYGWPG 421 (520)
T ss_pred HhhcCeeEEeCCCcccChhHHHHHHH----HHHHHHHH---HcCCCCCCcCHHHHHHHhcCCCCC
Confidence 99964 6789999976 46666555 55555543 3343 3479999999997665544
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.6e-08 Score=121.63 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=87.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC-
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~- 497 (1165)
+..+|+||+|+.+..+. ..|..|+.+++... ....-++|++ ...-..-..+.+.|.+||
T Consensus 377 ~~DLLlIDDIq~l~gke-----------~tqeeLF~l~N~l~--------e~gk~IIITS-d~~P~eL~~l~~rL~SRf~ 436 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE-----------STQEEFFHTFNTLH--------NANKQIVLSS-DRPPKQLVTLEDRLRNRFE 436 (617)
T ss_pred cCCEEEEehhccccCCH-----------HHHHHHHHHHHHHH--------hcCCCEEEec-CCChHhhhhccHHHHhhhh
Confidence 45799999999986442 24556666665321 1111223333 211111124678899998
Q ss_pred -CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 498 -PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 -~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
.+.|.+++++.+.+..||. ..++..| +.++++++++|+.... ...|.|..+|.++..-
T Consensus 437 ~GLvv~I~~PD~EtR~aIL~-----------kka~~r~--l~l~~eVi~yLa~r~~--------rnvR~LegaL~rL~a~ 495 (617)
T PRK14086 437 WGLITDVQPPELETRIAILR-----------KKAVQEQ--LNAPPEVLEFIASRIS--------RNIRELEGALIRVTAF 495 (617)
T ss_pred cCceEEcCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHhcc--------CCHHHHHHHHHHHHHH
Confidence 6888999999999999994 1233344 5788999999999763 4578888888888654
Q ss_pred hhcccCCCeeEEccccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.+..- -.||.+.+++.+.+
T Consensus 496 a~~~~----~~itl~la~~vL~~ 514 (617)
T PRK14086 496 ASLNR----QPVDLGLTEIVLRD 514 (617)
T ss_pred HHhhC----CCCCHHHHHHHHHH
Confidence 33221 23666666666653
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=107.80 Aligned_cols=114 Identities=16% Similarity=0.140 Sum_probs=71.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCCC-------CCCCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHLA-------KPSDL 1087 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~~-------~p~dl 1087 (1165)
+.|++||||||.+... +|..|++++|...+.. .|.. .-.+.-+|++++-... -...+
T Consensus 180 ~GgvLiLDEId~a~p~-------------vq~~L~~lLd~r~l~l-~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L 245 (383)
T PHA02244 180 KGGLFFIDEIDASIPE-------------ALIIINSAIANKFFDF-ADERVTAHEDFRVISAGNTLGKGADHIYVARNKI 245 (383)
T ss_pred cCCEEEEeCcCcCCHH-------------HHHHHHHHhccCeEEe-cCcEEecCCCEEEEEeeCCCccCcccccCCCccc
Confidence 6789999999998766 8888999998654332 2222 1245677777653211 12468
Q ss_pred chhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhH---HHHHHHHhhcCCceEeCHHHHHHHHH
Q psy2392 1088 IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLT---KQYEALLATEGIKIEFVDDGIQRLAE 1147 (1165)
Q Consensus 1088 ~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~---~q~~~l~~~egv~l~~~~~ai~~ia~ 1147 (1165)
.++++.||.. |+|+-+++-+. .|+... ..+. ...+..++.+|+...|+--++-..|+
T Consensus 246 ~~AllDRFv~-I~~dyp~~~E~-~i~~~~-~~lv~~a~~lR~~~~~~~l~~~~StR~li~~a~ 305 (383)
T PHA02244 246 DGATLDRFAP-IEFDYDEKIEH-LISNGD-EDLVNFVALLRHEMAEKGLDHVFSMRAIIHGKK 305 (383)
T ss_pred CHHHHhhcEE-eeCCCCcHHHH-HHhhhH-HHHHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence 8999999964 79999885444 344322 1222 22233355588887887765544444
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-08 Score=119.45 Aligned_cols=115 Identities=17% Similarity=0.287 Sum_probs=72.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-------eecC----ceEEEEEeCCcccCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-------IIKT----DHILFIASGAFHLAKPS 487 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-------~~~t----~~ilfI~~gaf~~~~p~ 487 (1165)
+.|++||||++.+.+. +|..|+..++.+.+..... .+.+ -++-+|++|.. .-..
T Consensus 226 nGGtL~LDei~~L~~~-------------~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~--~ll~ 290 (637)
T PRK13765 226 HKGVLFIDEINTLDLE-------------SQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNL--DALE 290 (637)
T ss_pred CCcEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCc--CHHH
Confidence 7899999999999544 6778988886554432110 1111 14557888753 1224
Q ss_pred CCchhhhCCCC---eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 488 DLIPELQGRFP---IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 488 ~l~pel~~R~~---~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
.+.|+|..||. +.+.|+.-.++....+ ..+.....+.+..+|-...|+++|+.+|++.+..
T Consensus 291 ~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~-----~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 291 NMHPALRSRIKGYGYEVYMRDTMEDTPENR-----RKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred hhhHHHHHHhccCeEEEEcccccCCCHHHH-----HHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 57899999997 7788875443322221 1222333334444444558999999999999876
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.9e-09 Score=111.54 Aligned_cols=45 Identities=47% Similarity=0.730 Sum_probs=37.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.+|+||+.+|+.+..+... ..|+||+||||||||++|++++..+.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----------------~h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----------------GHHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----------------C--EEEES-CCCTHHHHHHHHHHCS-
T ss_pred hhhcCcHHHHHHHHHHHcC----------------CCCeEEECCCCCCHHHHHHHHHHhCC
Confidence 5899999999999988863 37999999999999999999999884
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.71 E-value=6e-08 Score=111.98 Aligned_cols=92 Identities=14% Similarity=0.227 Sum_probs=69.2
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.+++.+.+.+.......-.. ..+.|++|||+|+++.. .++.||+.+|.
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~-------------~~~kv~iI~~a~~m~~~-------------aaNaLLK~LEE----- 132 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQL-------------GGRKVVLIEPAEAMNRN-------------AANALLKSLEE----- 132 (328)
T ss_pred CCCCHHHHHHHHHHHhhcccc-------------CCCeEEEECChhhCCHH-------------HHHHHHHHHhC-----
Confidence 346777777766443321111 25779999999999876 56699999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+.+||.+ +.+|+.+.|.++||+.. +.|.+++.++..+.|.
T Consensus 133 -----Pp~~~~fiL~----t~~~~~ll~TI~SRc~~-~~~~~~~~~~~~~~L~ 175 (328)
T PRK05707 133 -----PSGDTVLLLI----SHQPSRLLPTIKSRCQQ-QACPLPSNEESLQWLQ 175 (328)
T ss_pred -----CCCCeEEEEE----ECChhhCcHHHHhhcee-eeCCCcCHHHHHHHHH
Confidence 2356677766 36788999999999987 6999999999888774
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.7e-08 Score=113.93 Aligned_cols=118 Identities=21% Similarity=0.405 Sum_probs=74.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCce---EEEEecCCCCCCCC--CCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDH---ILFIASGAFHLAKP--SDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~---ilfI~~gaf~~~~p--~dl~pel 1091 (1165)
+.||+|+||+--|... +|+.||-.++.+.....--++.-.| +++|++. || .+|.|.|
T Consensus 144 nRGIlYvDEvnlL~d~-------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTm-----NPEeGeLrpqL 205 (423)
T COG1239 144 NRGILYVDEVNLLDDH-------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTM-----NPEEGELRPQL 205 (423)
T ss_pred cCCEEEEeccccccHH-------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeec-----Cccccccchhh
Confidence 7899999999877766 8888998887653322212333333 5566664 45 5799999
Q ss_pred hccCCeEEEcCCC-CHHHHHHHHhhhHH------HhHHHHHH---------HHhhcCC-ceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPIRVELDSL-SISDFTRIMTSTNV------CLTKQYEA---------LLATEGI-KIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i~v~l~~l-~~~~l~~il~~~~~------~l~~q~~~---------l~~~egv-~l~~~~~ai~~ia~~a~~~ 1152 (1165)
+.||.+.|...+. +.++...|...-.. ...++|.. ..+..++ .+..++++...||..|...
T Consensus 206 lDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~ 283 (423)
T COG1239 206 LDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL 283 (423)
T ss_pred HhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh
Confidence 9999998877665 45555555542111 11222211 1112222 4577889999999888765
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.9e-08 Score=113.59 Aligned_cols=224 Identities=20% Similarity=0.294 Sum_probs=145.2
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEV 257 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~~ 257 (1165)
....++|+..+...+.+.+..- + ....++|++|.+||||-.+|++|-+.. +.||+.+||+.+..
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv---A---------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~- 205 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV---A---------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE- 205 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH---h---------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH-
Confidence 4569999999999988887642 0 123799999999999999999999988 57999999988743
Q ss_pred cccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCC
Q psy2392 258 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 337 (1165)
Q Consensus 258 GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 337 (1165)
..+-++||+.. .|.
T Consensus 206 -------~l~ESELFGhe-----------------------------------------------------------kGA 219 (464)
T COG2204 206 -------NLLESELFGHE-----------------------------------------------------------KGA 219 (464)
T ss_pred -------HHHHHHhhccc-----------------------------------------------------------ccC
Confidence 33344455441 111
Q ss_pred CCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhh
Q psy2392 338 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 417 (1165)
Q Consensus 338 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 417 (1165)
.+ +...+| .+ .++.
T Consensus 220 FT-----------------------------------GA~~~r-~G-----------------------------~fE~- 233 (464)
T COG2204 220 FT-----------------------------------GAITRR-IG-----------------------------RFEQ- 233 (464)
T ss_pred cC-----------------------------------Cccccc-Cc-----------------------------ceeE-
Confidence 10 000000 00 0122
Q ss_pred ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC---CCCCCchhh
Q psy2392 418 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---KPSDLIPEL 493 (1165)
Q Consensus 418 ~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~---~p~~l~pel 493 (1165)
.+.|.+|||||..+.-. +|.-||..++.+.+..-.| ..-.-++=+|++++.... .--.|...|
T Consensus 234 A~GGTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDL 300 (464)
T COG2204 234 ANGGTLFLDEIGEMPLE-------------LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDL 300 (464)
T ss_pred cCCceEEeeccccCCHH-------------HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHH
Confidence 27899999999988765 7889999998665543211 111225567888654321 122488888
Q ss_pred hCCCCe-eEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 494 QGRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 494 ~~R~~~-~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.-|+.+ .+.++||-+ +|+--++ +.++++..+.+. --...|+++|++.|..+. + -+..|-|++++
T Consensus 301 yyRLnV~~i~iPpLRER~EDIp~L~----~hfl~~~~~~~~--~~~~~~s~~a~~~L~~y~--W-----PGNVREL~N~v 367 (464)
T COG2204 301 YYRLNVVPLRLPPLRERKEDIPLLA----EHFLKRFAAELG--RPPKGFSPEALAALLAYD--W-----PGNVRELENVV 367 (464)
T ss_pred HhhhccceecCCcccccchhHHHHH----HHHHHHHHHHcC--CCCCCCCHHHHHHHHhCC--C-----ChHHHHHHHHH
Confidence 888875 345556543 4555555 444554444332 123589999999997644 3 46799999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
|+++-
T Consensus 368 er~~i 372 (464)
T COG2204 368 ERAVI 372 (464)
T ss_pred HHHHh
Confidence 99873
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=116.47 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=41.6
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+++||++.++.|..++... . ....+ ...++|+||||||||++++++|+.++..++
T Consensus 85 el~~~~~ki~~l~~~l~~~--~----~~~~~---~~illL~GP~GsGKTTl~~~la~~l~~~~~ 139 (637)
T TIGR00602 85 ELAVHKKKIEEVETWLKAQ--V----LENAP---KRILLITGPSGCGKSTTIKILSKELGIQVQ 139 (637)
T ss_pred HhcCcHHHHHHHHHHHHhc--c----cccCC---CcEEEEECCCCCCHHHHHHHHHHHhhhHHH
Confidence 7899999999988887542 0 00111 135999999999999999999999975543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0743|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.5e-08 Score=112.01 Aligned_cols=87 Identities=17% Similarity=0.362 Sum_probs=55.7
Q ss_pred cceEEEEecchhhhccCCCCCC----Cc--cchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNN----TD--ISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPE 492 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~----~~--~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pe 492 (1165)
+.+||+|..||.-...+..... .+ .+.- --.-||-.+||-.-++ ....|+ |+| ++.+..|+|+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~V-TlSGLLNfiDGlwSsc-----g~ERIi-vFT----TNh~EkLDPA 354 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRV-TLSGLLNFLDGLWSSC-----GDERII-VFT----TNHKEKLDPA 354 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCccee-ehHHhhhhhccccccC-----CCceEE-EEe----cCChhhcCHh
Confidence 6789999999987543222110 00 0111 1123777778743332 123444 344 4667889999
Q ss_pred hh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 493 LQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 493 l~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+ ||++..|.+.--+.+.++.+++
T Consensus 355 LlRpGRmDmhI~mgyCtf~~fK~La~ 380 (457)
T KOG0743|consen 355 LLRPGRMDMHIYMGYCTFEAFKTLAS 380 (457)
T ss_pred hcCCCcceeEEEcCCCCHHHHHHHHH
Confidence 98 6999999999999999888874
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.4e-08 Score=115.47 Aligned_cols=81 Identities=20% Similarity=0.309 Sum_probs=56.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ece--eecCceEEEEEeCCccc----------CC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYG--IIKTDHILFIASGAFHL----------AK 485 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~--~~~t~~ilfI~~gaf~~----------~~ 485 (1165)
.+|++|||||+.+.+. +|..|+..||.+.+.. +.+ .....++.+|++.+-.. |.
T Consensus 294 ~gGvLfLDEi~e~~~~-------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~ 360 (506)
T PRK09862 294 HNGVLFLDELPEFERR-------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCT 360 (506)
T ss_pred cCCEEecCCchhCCHH-------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcC
Confidence 6899999999987665 7779999998776642 222 11234667777744221 11
Q ss_pred C-------CCCchhhhCCCCeeEecCCCCHHHHH
Q psy2392 486 P-------SDLIPELQGRFPIRVELDSLSISDFT 512 (1165)
Q Consensus 486 p-------~~l~pel~~R~~~~v~~~~L~~~~l~ 512 (1165)
| ..+.+.|+.||++.|.+.+++.+++.
T Consensus 361 ~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~ 394 (506)
T PRK09862 361 PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILS 394 (506)
T ss_pred HHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHh
Confidence 2 24778999999999999999766543
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=115.75 Aligned_cols=103 Identities=23% Similarity=0.290 Sum_probs=67.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+|||||+.+... +|..||.+++...+. +.|.- ..-++-+||+..-.. .....|.+.|
T Consensus 322 ~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~-r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL 387 (538)
T PRK15424 322 HGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVT-RVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDL 387 (538)
T ss_pred CCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEE-ecCCCceeccceEEEEecCCCHHHHHhcccchHHH
Confidence 6899999999999877 999999999876553 22321 123456777765322 1223477788
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHH
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGI 1142 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai 1142 (1165)
..|+ .+.++++||-+ +|+..+.. ..+.++..- .+. .++++++
T Consensus 388 ~yrL~~~~I~lPPLReR~eDI~~L~~----~fl~~~~~~---~~~--~~~~~a~ 432 (538)
T PRK15424 388 FYRLSILRLQLPPLRERVADILPLAE----SFLKQSLAA---LSA--PFSAALR 432 (538)
T ss_pred HHHhcCCeecCCChhhchhHHHHHHH----HHHHHHHHH---cCC--CCCHHHH
Confidence 8886 46788999976 57776666 455554322 233 4677666
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-08 Score=122.19 Aligned_cols=115 Identities=15% Similarity=0.288 Sum_probs=79.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..||.+++...+. +.|.- .+-++-+|++..-.. .....|.+.|
T Consensus 416 ~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~-~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL 481 (638)
T PRK11388 416 HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVIT-RLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQL 481 (638)
T ss_pred CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEE-eCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHH
Confidence 6799999999999877 999999999876553 22321 112456777765321 2234577788
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
.-|| ...|.++||-+ +|+..++. .++.++..- .|..+.|+++|++.|..+....
T Consensus 482 ~~~l~~~~i~lPpLreR~~Di~~L~~----~~l~~~~~~---~~~~~~~s~~a~~~L~~y~WPG 538 (638)
T PRK11388 482 YYALHAFEITIPPLRMRREDIPALVN----NKLRSLEKR---FSTRLKIDDDALARLVSYRWPG 538 (638)
T ss_pred hhhhceeEEeCCChhhhhhHHHHHHH----HHHHHHHHH---hCCCCCcCHHHHHHHHcCCCCC
Confidence 7776 45678999976 47877776 555555432 3445689999999998877655
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=98.67 E-value=5e-08 Score=120.56 Aligned_cols=67 Identities=15% Similarity=0.154 Sum_probs=51.5
Q ss_pred HHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 765 IIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 765 i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
.|-++++|..+ ++++||++.++.+..++... ..+ .. ....++|+||||||||++++++|+.++..+
T Consensus 73 pW~eKyrP~~l-----del~~~~~ki~~l~~~l~~~--~~~----~~---~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 73 PWVEKYKPETQ-----HELAVHKKKIEEVETWLKAQ--VLE----NA---PKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred chHHHhCCCCH-----HHhcCcHHHHHHHHHHHHhc--ccc----cC---CCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 46678999888 88999999999988887632 110 01 123589999999999999999999997654
Q ss_pred E
Q psy2392 845 I 845 (1165)
Q Consensus 845 i 845 (1165)
+
T Consensus 139 ~ 139 (637)
T TIGR00602 139 Q 139 (637)
T ss_pred H
Confidence 3
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5e-08 Score=117.00 Aligned_cols=101 Identities=13% Similarity=0.249 Sum_probs=65.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
+..+++||||+.+.... ..|.+|+.++..-. ..... .|.++......-..+.+.|.+||.
T Consensus 202 ~~dvLiIDDiq~l~~k~-----------~~qeelf~l~N~l~--------~~~k~-IIlts~~~p~~l~~l~~rL~SR~~ 261 (445)
T PRK12422 202 NVDALFIEDIEVFSGKG-----------ATQEEFFHTFNSLH--------TEGKL-IVISSTCAPQDLKAMEERLISRFE 261 (445)
T ss_pred cCCEEEEcchhhhcCCh-----------hhHHHHHHHHHHHH--------HCCCc-EEEecCCCHHHHhhhHHHHHhhhc
Confidence 45699999999987542 25777776654210 11112 223332111111246689999995
Q ss_pred --eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 --i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.+.|.+++.+++.+||+ ..++..|+ .++++++.+||....
T Consensus 262 ~Gl~~~l~~pd~e~r~~iL~-----------~k~~~~~~--~l~~evl~~la~~~~ 304 (445)
T PRK12422 262 WGIAIPLHPLTKEGLRSFLE-----------RKAEALSI--RIEETALDFLIEALS 304 (445)
T ss_pred CCeEEecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhcC
Confidence 889999999999999998 22333454 789999999987544
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.65 E-value=8e-07 Score=99.42 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=61.6
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCC--eeEeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI--KIEFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i--~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
..+.+|+..++.|++|+.+++.+++. .. +...|. ...|++++++.|.+.+ .+-.|.+..
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~----~~-------l~~~g~~~~~~~~~~~~~~i~~~s--------~G~p~~i~~ 237 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIE----HR-------LERAGNRDAPVFSEGAFDAIHRFS--------RGIPRLINI 237 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHH----HH-------HHHcCCCCCCCcCHHHHHHHHHHc--------CCcccHHHH
Confidence 35788999899999999999998883 11 222222 3468999999999987 445788998
Q ss_pred HHHHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 569 AMEKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 569 ~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+...++.....+-. -.||.+.|++.+.+
T Consensus 238 l~~~~~~~a~~~~~---~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 238 LCDRLLLSAFLEEK---REIGGEEVREVIAE 265 (269)
T ss_pred HHHHHHHHHHHcCC---CCCCHHHHHHHHHH
Confidence 88888765433221 24787777766554
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-07 Score=98.93 Aligned_cols=62 Identities=23% Similarity=0.373 Sum_probs=47.8
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
++++|.+..++.|....... -.|. +..++||||+.|||||+++|++...+ |..++.++..++
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~F--l~G~--------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQF--LQGL--------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHH--HcCC--------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 37889999999988877654 1121 23799999999999999999999988 556666666554
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-07 Score=112.95 Aligned_cols=130 Identities=22% Similarity=0.264 Sum_probs=88.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..|+..++.+.+..-.+ .....++-+|++..... .....|.++|.
T Consensus 232 ~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 298 (469)
T PRK10923 232 DGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHH
Confidence 5789999999999876 7778999998655432111 11123566777754321 12345889999
Q ss_pred CCC-CeeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCee-EeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~-~~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l-~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|| ...|.++||.+ +|+..++ +.++.++.. ..|..+ .+++++++.|..+.. .+..|-|++++
T Consensus 299 ~~l~~~~i~~PpLreR~~Di~~l~----~~~l~~~~~---~~~~~~~~~~~~a~~~L~~~~w-------pgNv~eL~~~i 364 (469)
T PRK10923 299 HRLNVIRVHLPPLRERREDIPRLA----RHFLQVAAR---ELGVEAKLLHPETEAALTRLAW-------PGNVRQLENTC 364 (469)
T ss_pred HHhcceeecCCCcccchhhHHHHH----HHHHHHHHH---HcCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 998 57888999876 4666665 344444433 234433 689999999987554 36789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++++.
T Consensus 365 ~~~~~ 369 (469)
T PRK10923 365 RWLTV 369 (469)
T ss_pred HHHHH
Confidence 99874
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.9e-08 Score=105.14 Aligned_cols=87 Identities=13% Similarity=0.104 Sum_probs=61.4
Q ss_pred CchhhhCCCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchh
Q psy2392 489 LIPELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRL 566 (1165)
Q Consensus 489 l~pel~~R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l 566 (1165)
+.|.|++||. ..+++++|+.+++.+||. +.+...| +.++++++++|++.+. ...|.+
T Consensus 134 ~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~-----------~~~~~~~--~~l~~ev~~~La~~~~--------r~~~~l 192 (226)
T PRK09087 134 KLPDLKSRLKAATVVEIGEPDDALLSQVIF-----------KLFADRQ--LYVDPHVVYYLVSRME--------RSLFAA 192 (226)
T ss_pred ccccHHHHHhCCceeecCCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHHhh--------hhHHHH
Confidence 4799999994 678999999999999994 1223334 5789999999999883 456777
Q ss_pred HHHHHHHHHHhhcccCCCeeEEcccccccccccC
Q psy2392 567 YTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 567 ~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
..++.++...... . + ..||...+++.++..
T Consensus 193 ~~~l~~L~~~~~~-~-~--~~it~~~~~~~l~~~ 222 (226)
T PRK09087 193 QTIVDRLDRLALE-R-K--SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHHHH-h-C--CCCCHHHHHHHHHhh
Confidence 7777776433221 1 1 237777777777643
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.9e-07 Score=113.04 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=82.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-eceee--cCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGII--KTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~~--~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
++|++|||||+++.+. +|..||..|+.+.++. +.|.. ...++.+||+.+-.. .-..|.+.|..
T Consensus 84 ~~GvL~lDEi~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e-~~g~L~~~Lld 149 (589)
T TIGR02031 84 PRGVLYVDMANLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE-GGGGLPDHLLD 149 (589)
T ss_pred CCCcEeccchhhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc-ccCCCCHHHHH
Confidence 5789999999999876 7779999998665433 22211 123556777633111 01258899999
Q ss_pred CCCeeEecCCCC-HHHHHHHHhhhh----------HhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcc
Q psy2392 496 RFPIRVELDSLS-ISDFTRIMTSTN----------VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGAR 564 (1165)
Q Consensus 496 R~~~~v~~~~L~-~~~l~~Il~~~~----------~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR 564 (1165)
||++.|.+..+. .++..+|+.... ..+...........--.+.++++.++.|++.+...+- .|-|
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv----~s~R 225 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI----SGHR 225 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC----CCcc
Confidence 999988887654 444567764311 1111111112222233568899999999999987521 2345
Q ss_pred hhHHHHH
Q psy2392 565 RLYTAME 571 (1165)
Q Consensus 565 ~l~~~ie 571 (1165)
....++.
T Consensus 226 a~i~~~r 232 (589)
T TIGR02031 226 ADLFAVR 232 (589)
T ss_pred HHHHHHH
Confidence 5544443
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.6e-07 Score=116.39 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=78.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeecc--CceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIK--TDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~--t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
+.|++|||||+++... +|..||..||...|+. +.|... ..++.+||+-.-.. .-..|.+.|..
T Consensus 84 ~~GvL~lDEi~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e-~~g~L~~~Lld 149 (589)
T TIGR02031 84 PRGVLYVDMANLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE-GGGGLPDHLLD 149 (589)
T ss_pred CCCcEeccchhhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc-ccCCCCHHHHH
Confidence 6799999999999876 9999999998665433 333221 13456676432110 01258899999
Q ss_pred cCCeEEEcCCCC-HHHHHHHHhhhH----------HHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccC
Q psy2392 1094 RFPIRVELDSLS-ISDFTRIMTSTN----------VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1094 R~~i~v~l~~l~-~~~l~~il~~~~----------~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
||++.|.+..+. .++..+|++.-. ..+...+.......--.+.++++.+++|+.++...+
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~g 220 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLG 220 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcC
Confidence 999998887664 444566665311 111222222222222345889999999999998763
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=101.32 Aligned_cols=49 Identities=14% Similarity=0.132 Sum_probs=39.0
Q ss_pred hhhhccCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1089 PELQGRFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1089 pel~gR~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|.|++||- ..+++++++.+++.++++ +.+...|+ .++++++++|++.+-
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~-----------k~~~~~~l--~l~~ev~~~L~~~~~ 180 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIF-----------KHFSISSV--TISRQIIDFLLVNLP 180 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcc
Confidence 99999987 357999999999988887 22333455 788999999998764
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=7.8e-07 Score=104.16 Aligned_cols=103 Identities=17% Similarity=0.204 Sum_probs=64.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC-
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP- 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~- 1096 (1165)
.-||.+||+|.+...... +-..|+..-+- .+.++.+|+.+.-..- ...|.|-+.+|+.
T Consensus 124 ~~IvvLDEid~L~~~~~~----------~LY~L~r~~~~----------~~~~v~vi~i~n~~~~-~~~ld~rv~s~l~~ 182 (366)
T COG1474 124 TVIVILDEVDALVDKDGE----------VLYSLLRAPGE----------NKVKVSIIAVSNDDKF-LDYLDPRVKSSLGP 182 (366)
T ss_pred eEEEEEcchhhhccccch----------HHHHHHhhccc----------cceeEEEEEEeccHHH-HHHhhhhhhhccCc
Confidence 459999999999987321 33333333221 1445666666541100 2346677777754
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..+.|+|++.++|+.||..--. ..+ ..| .+++++++.+|..++..
T Consensus 183 ~~I~F~pY~a~el~~Il~~R~~-------~~~-~~~---~~~~~vl~lia~~~a~~ 227 (366)
T COG1474 183 SEIVFPPYTAEELYDILRERVE-------EGF-SAG---VIDDDVLKLIAALVAAE 227 (366)
T ss_pred ceeeeCCCCHHHHHHHHHHHHH-------hhc-cCC---CcCccHHHHHHHHHHHc
Confidence 4468999999999999992111 112 223 48899999999887765
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.59 E-value=2e-08 Score=105.24 Aligned_cols=58 Identities=28% Similarity=0.487 Sum_probs=43.9
Q ss_pred EecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 185 IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
++|.+.+.+.+.+.+... . ..+.++|++|++||||+.+|+++-+.. +.||+.+||+.+
T Consensus 1 liG~s~~m~~~~~~~~~~----a--------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----A--------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----T--------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHH----h--------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 478888888887777643 1 124799999999999999999999876 579999999986
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-07 Score=103.68 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=63.4
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC--C
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF--P 1096 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~--~ 1096 (1165)
-+++||+|+.+..... .|..|..++.... .....++|++ ......-..+.|.|.+|| -
T Consensus 99 d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n~~~--------~~g~~ilits-~~~p~~l~~~~~~L~SRl~~g 158 (234)
T PRK05642 99 ELVCLDDLDVIAGKAD-----------WEEALFHLFNRLR--------DSGRRLLLAA-SKSPRELPIKLPDLKSRLTLA 158 (234)
T ss_pred CEEEEechhhhcCChH-----------HHHHHHHHHHHHH--------hcCCEEEEeC-CCCHHHcCccCccHHHHHhcC
Confidence 4899999998865421 4667887775311 1112233333 211111123479999999 3
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.+++++++.+++.+||+. .....| +.++++++++|++.+-
T Consensus 159 l~~~l~~~~~e~~~~il~~-----------ka~~~~--~~l~~ev~~~L~~~~~ 199 (234)
T PRK05642 159 LVFQMRGLSDEDKLRALQL-----------RASRRG--LHLTDEVGHFILTRGT 199 (234)
T ss_pred eeeecCCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHHHHHHhcC
Confidence 5679999999999999881 122235 4788999999988654
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.4e-08 Score=102.01 Aligned_cols=58 Identities=28% Similarity=0.487 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 783 IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
++|...+...+.+.+... . ..+..+|++|++||||+.+|+++-+.. +.||+.+||+.+
T Consensus 1 liG~s~~m~~~~~~~~~~----a--------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----A--------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----T--------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHH----h--------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhh
Confidence 468888887777776642 1 114789999999999999999999977 579999999986
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-07 Score=102.77 Aligned_cols=100 Identities=24% Similarity=0.384 Sum_probs=63.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..-+++||.||.+.+. ...|..|..+++.-. .....++|++.. ....-..+.|.|.+||.
T Consensus 97 ~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~--------~~~k~li~ts~~-~P~~l~~~~~~L~SRl~ 156 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLI--------ESGKQLILTSDR-PPSELSGLLPDLRSRLS 156 (219)
T ss_dssp TSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHH--------HTTSEEEEEESS--TTTTTTS-HHHHHHHH
T ss_pred cCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHH--------hhCCeEEEEeCC-CCccccccChhhhhhHh
Confidence 4569999999999765 236888888887422 223334444422 21222236789999964
Q ss_pred --eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 --i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.+++++++.++..+||. ..++..|+ .++++++++|++..
T Consensus 157 ~Gl~~~l~~pd~~~r~~il~-----------~~a~~~~~--~l~~~v~~~l~~~~ 198 (219)
T PF00308_consen 157 WGLVVELQPPDDEDRRRILQ-----------KKAKERGI--ELPEEVIEYLARRF 198 (219)
T ss_dssp CSEEEEE----HHHHHHHHH-----------HHHHHTT----S-HHHHHHHHHHT
T ss_pred hcchhhcCCCCHHHHHHHHH-----------HHHHHhCC--CCcHHHHHHHHHhh
Confidence 588999999999999999 44556677 58999999999864
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.8e-07 Score=116.88 Aligned_cols=115 Identities=18% Similarity=0.319 Sum_probs=78.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--eccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--~~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
.+|++||||||.+... +|..|+..++...+. +.| .....++-+|++..... .....|.++|
T Consensus 470 ~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~-~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L 535 (686)
T PRK15429 470 DKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFE-RLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDL 535 (686)
T ss_pred CCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEE-eCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHH
Confidence 5799999999999876 999999999865432 112 12234567888876432 2234577888
Q ss_pred hccCCe-EEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCce-EeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i-~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l-~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+.. .|+++||-+ +|+..++. ..+.++.. ..|..+ .|+++|++.|.......
T Consensus 536 ~~~l~~~~i~lPpLreR~~Di~~L~~----~~l~~~~~---~~~~~~~~~s~~al~~L~~y~WPG 593 (686)
T PRK15429 536 YYRLNVFPIHLPPLRERPEDIPLLVK----AFTFKIAR---RMGRNIDSIPAETLRTLSNMEWPG 593 (686)
T ss_pred HhccCeeEEeCCChhhhHhHHHHHHH----HHHHHHHH---HcCCCCCCcCHHHHHHHHhCCCCC
Confidence 888654 578999975 56766665 45555443 335554 59999999998766655
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.1e-07 Score=112.15 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=47.1
Q ss_pred HHHHHHhcccEecchhhHHHHHHHHHhhhhhh----cccCCC---CCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQ----QITGPL---QQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 175 ~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~----~l~~~~---~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..|...+.-.|.|++.+|+.|.-++.....+. .+.++. .......++||+|.||||||.+|+.+++..
T Consensus 442 ~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~ls 516 (915)
T PTZ00111 442 RILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLS 516 (915)
T ss_pred HHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhC
Confidence 45566777899999999999887776542211 011110 001112599999999999999999999965
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.7e-08 Score=101.21 Aligned_cols=60 Identities=33% Similarity=0.565 Sum_probs=42.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
.-|++||++|+++.. .|+.||+.||...-+| .||... ++|+.++|.+++|+-.
T Consensus 103 ~KviiI~~ad~l~~~-------------a~NaLLK~LEepp~~~----------~fiL~t----~~~~~il~TI~SRc~~ 155 (162)
T PF13177_consen 103 YKVIIIDEADKLTEE-------------AQNALLKTLEEPPENT----------YFILIT----NNPSKILPTIRSRCQV 155 (162)
T ss_dssp SEEEEEETGGGS-HH-------------HHHHHHHHHHSTTTTE----------EEEEEE----S-GGGS-HHHHTTSEE
T ss_pred ceEEEeehHhhhhHH-------------HHHHHHHHhcCCCCCE----------EEEEEE----CChHHChHHHHhhceE
Confidence 459999999999987 8999999999754444 444442 5788999999999876
Q ss_pred EEEcCCCC
Q psy2392 1098 RVELDSLS 1105 (1165)
Q Consensus 1098 ~v~l~~l~ 1105 (1165)
+.|++|+
T Consensus 156 -i~~~~ls 162 (162)
T PF13177_consen 156 -IRFRPLS 162 (162)
T ss_dssp -EEE----
T ss_pred -EecCCCC
Confidence 5888875
|
... |
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-07 Score=117.48 Aligned_cols=115 Identities=17% Similarity=0.300 Sum_probs=71.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee-----ee--eccC----ceEEEEecCCCCCCCCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-----YG--IIKT----DHILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k-----~~--~~~t----~~ilfI~~gaf~~~~p~ 1085 (1165)
+.|++|||||+.+... +|..|+..++...+... .+ .+.+ -++-+|++|.-. -..
T Consensus 226 nGGtL~LDei~~L~~~-------------~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~--ll~ 290 (637)
T PRK13765 226 HKGVLFIDEINTLDLE-------------SQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLD--ALE 290 (637)
T ss_pred CCcEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcC--HHH
Confidence 6899999999999433 88899998875544321 00 0111 245678887631 124
Q ss_pred CCchhhhccCC---eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1086 DLIPELQGRFP---IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1086 dl~pel~gR~~---i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+.|+|..||. +.+.|++-.++....+. .++......+..+|-...|+++|+.+|.+.+-.
T Consensus 291 ~~dpdL~~rfk~~~v~v~f~~~~~d~~e~~~-----~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R 354 (637)
T PRK13765 291 NMHPALRSRIKGYGYEVYMRDTMEDTPENRR-----KLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKR 354 (637)
T ss_pred hhhHHHHHHhccCeEEEEcccccCCCHHHHH-----HHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHH
Confidence 56899999998 77888765433222111 222233334444444458999999999987663
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.1e-07 Score=106.17 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=58.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++|||+|+++.. .++.||+.+|... .+.+||... .+|+.+.|.+++||-+
T Consensus 107 ~kv~iI~~a~~m~~~-------------aaNaLLK~LEEPp----------~~~~fiL~t----~~~~~ll~TI~SRc~~ 159 (328)
T PRK05707 107 RKVVLIEPAEAMNRN-------------AANALLKSLEEPS----------GDTVLLLIS----HQPSRLLPTIKSRCQQ 159 (328)
T ss_pred CeEEEECChhhCCHH-------------HHHHHHHHHhCCC----------CCeEEEEEE----CChhhCcHHHHhhcee
Confidence 458999999999987 7889999999633 345666543 5888999999999998
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+++.++..+.|.+
T Consensus 160 -~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 160 -QACPLPSNEESLQWLQQ 176 (328)
T ss_pred -eeCCCcCHHHHHHHHHH
Confidence 69999999999988874
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-07 Score=108.80 Aligned_cols=208 Identities=21% Similarity=0.336 Sum_probs=142.5
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVG 856 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~G 856 (1165)
...++|+..+...+...+..- - ....++|+.|.+||||-.+|++|-+.. +.||+.+||..+..
T Consensus 140 ~~~liG~S~am~~l~~~i~kv----A--------~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~-- 205 (464)
T COG2204 140 GGELVGESPAMQQLRRLIAKV----A--------PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPE-- 205 (464)
T ss_pred cCCceecCHHHHHHHHHHHHH----h--------CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCH--
Confidence 468999999999988887632 1 113789999999999999999999998 57999999988643
Q ss_pred ccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCC
Q psy2392 857 YVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 936 (1165)
Q Consensus 857 yvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~l 936 (1165)
..+-+++|+.. ++.||++.. =+.|+|
T Consensus 206 ------~l~ESELFGhe-------------------------------------kGAFTGA~~-----------~r~G~f 231 (464)
T COG2204 206 ------NLLESELFGHE-------------------------------------KGAFTGAIT-----------RRIGRF 231 (464)
T ss_pred ------HHHHHHhhccc-------------------------------------ccCcCCccc-----------ccCcce
Confidence 23445566543 344444321 123433
Q ss_pred CCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy2392 937 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE 1016 (1165)
Q Consensus 937 d~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~ 1016 (1165)
+.|
T Consensus 232 ------------------------------------------------------------------------E~A----- 234 (464)
T COG2204 232 ------------------------------------------------------------------------EQA----- 234 (464)
T ss_pred ------------------------------------------------------------------------eEc-----
Confidence 223
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccC--ceEEEEecCCCCCC---CCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHLA---KPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t--~~ilfI~~gaf~~~---~p~dl~pel 1091 (1165)
+.|.+|+|||-.+.-. +|.-||..++...+. +.|.-.+ -++-+||++.-... +--.|...|
T Consensus 235 ~GGTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~~~-rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDL 300 (464)
T COG2204 235 NGGTLFLDEIGEMPLE-------------LQVKLLRVLQEREFE-RVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDL 300 (464)
T ss_pred CCceEEeeccccCCHH-------------HHHHHHHHHHcCeeE-ecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHH
Confidence 7899999999988776 999999999865543 3443222 35678888764322 223477888
Q ss_pred hccCCe-EEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPI-RVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i-~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
--||.+ .+.++||- .+|+--++. ..+++++.-++.. ...|+++|++.|..+..-.
T Consensus 301 yyRLnV~~i~iPpLRER~EDIp~L~~----hfl~~~~~~~~~~--~~~~s~~a~~~L~~y~WPG 358 (464)
T COG2204 301 YYRLNVVPLRLPPLRERKEDIPLLAE----HFLKRFAAELGRP--PKGFSPEALAALLAYDWPG 358 (464)
T ss_pred HhhhccceecCCcccccchhHHHHHH----HHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCCh
Confidence 888664 34677774 466766666 5666666555422 2478999999997666554
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3e-07 Score=111.38 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=79.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
.+|.+||||||.+... +|..|+.+++...+. +.|.. ..-++-+|++..... .+...|.++|
T Consensus 232 ~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~-~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L 297 (469)
T PRK10923 232 DGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFY-RVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDL 297 (469)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEE-eCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHH
Confidence 5789999999999876 899999999865543 22221 123567777765322 1234578999
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCce-EeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l-~~~~~ai~~ia~~a~~~ 1152 (1165)
..|| .+.+.++||-+ +|+..++. ..+.++..- .|..+ .|+++|++.|..+.+-.
T Consensus 298 ~~~l~~~~i~~PpLreR~~Di~~l~~----~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~wpg 355 (469)
T PRK10923 298 FHRLNVIRVHLPPLRERREDIPRLAR----HFLQVAARE---LGVEAKLLHPETEAALTRLAWPG 355 (469)
T ss_pred HHHhcceeecCCCcccchhhHHHHHH----HHHHHHHHH---cCCCCCCcCHHHHHHHHhCCCCC
Confidence 9998 68889999976 57766666 555555433 34333 68999999988766654
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.5e-07 Score=103.65 Aligned_cols=92 Identities=11% Similarity=0.203 Sum_probs=70.4
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.++|.+++.+.......-.. ..+.|++||++|+++.. .++.||+.+|.
T Consensus 85 ~~I~id~iR~l~~~~~~~~~~-------------g~~KV~iI~~a~~m~~~-------------AaNaLLKtLEE----- 133 (325)
T PRK06871 85 KDIGVDQVREINEKVSQHAQQ-------------GGNKVVYIQGAERLTEA-------------AANALLKTLEE----- 133 (325)
T ss_pred CCCCHHHHHHHHHHHhhcccc-------------CCceEEEEechhhhCHH-------------HHHHHHHHhcC-----
Confidence 346777887766543322211 25679999999999876 66799999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+++||..+ .+|+.+.|.++||+.. +.|.+++.+++.+.|.
T Consensus 134 -----Pp~~~~fiL~t----~~~~~llpTI~SRC~~-~~~~~~~~~~~~~~L~ 176 (325)
T PRK06871 134 -----PRPNTYFLLQA----DLSAALLPTIYSRCQT-WLIHPPEEQQALDWLQ 176 (325)
T ss_pred -----CCCCeEEEEEE----CChHhCchHHHhhceE-EeCCCCCHHHHHHHHH
Confidence 45677787763 5789999999999986 5899999999888774
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.8e-07 Score=106.81 Aligned_cols=129 Identities=19% Similarity=0.291 Sum_probs=80.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece--eecCceEEEEEeCCcccCC---CCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHLAK---PSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~--~~~t~~ilfI~~gaf~~~~---p~~l~pel 493 (1165)
+.|-+|+|||-.+... .|.-||..++...+.- .| ....-+|=+|||++-...+ --.|+--|
T Consensus 340 ~gGTLFLDEIgempl~-------------LQaKLLRVLQEkei~r-vG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDL 405 (560)
T COG3829 340 NGGTLFLDEIGEMPLP-------------LQAKLLRVLQEKEIER-VGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDL 405 (560)
T ss_pred cCCeEEehhhccCCHH-------------HHHHHHHHHhhceEEe-cCCCCceeeEEEEEeccCcCHHHHHhcCcchhhh
Confidence 7899999999988766 7778999997544321 11 1111245577775432111 11255555
Q ss_pred hCCCCee-EecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeE-eCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 494 QGRFPIR-VELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIE-FVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 494 ~~R~~~~-v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~-~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
--|+.+. |.++||- ++|+.-+. ..++..+.+. .+..+. ++++++..|.++. + -+..|-|.++
T Consensus 406 YYRLNV~~i~iPPLReR~eDI~~L~----~~Fl~k~s~~---~~~~v~~ls~~a~~~L~~y~--W-----PGNVRELeNv 471 (560)
T COG3829 406 YYRLNVIPITIPPLRERKEDIPLLA----EYFLDKFSRR---YGRNVKGLSPDALALLLRYD--W-----PGNVRELENV 471 (560)
T ss_pred eeeeceeeecCCCcccCcchHHHHH----HHHHHHHHHH---cCCCcccCCHHHHHHHHhCC--C-----CchHHHHHHH
Confidence 5555432 3455553 35555555 4455555443 355555 8999999987654 3 4679999999
Q ss_pred HHHHHH
Q psy2392 570 MEKLLE 575 (1165)
Q Consensus 570 ie~~l~ 575 (1165)
||+++-
T Consensus 472 iER~v~ 477 (560)
T COG3829 472 IERAVN 477 (560)
T ss_pred HHHHHh
Confidence 999874
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=7e-07 Score=105.70 Aligned_cols=56 Identities=32% Similarity=0.444 Sum_probs=41.0
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCC--CeEEEecCCc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA--PFIKIEATKF 852 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~--~fi~l~~se~ 852 (1165)
+++++-+...+.+..++.. .++++|+||||||||++|+.+|..+.. .+.++++..+
T Consensus 175 ~d~~i~e~~le~l~~~L~~----------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtF 232 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQF 232 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEee
Confidence 3566777777777666542 378999999999999999999998843 3444555444
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.4e-07 Score=106.73 Aligned_cols=130 Identities=18% Similarity=0.264 Sum_probs=85.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|++|||||+.+... +|..|+.+++.+.+..-.+ .....++-+|++..... .....|.++|.
T Consensus 233 ~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 299 (445)
T TIGR02915 233 HGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLF 299 (445)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHH
Confidence 5799999999999876 7789999998765432111 11122455677654321 11245888888
Q ss_pred CCCC-eeEecCCCCHH--HHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~~--~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. ..|.++||.+- |+..++ ..++.++... .+.. ..+++++++.|..+.. .+..|-|+++|
T Consensus 300 ~~l~~~~i~lPpLr~R~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgNvreL~~~i 365 (445)
T TIGR02915 300 YRIAEISITIPPLRSRDGDAVLLA----NAFLERFARE---LKRKTKGFTDDALRALEAHAW-------PGNVRELENKV 365 (445)
T ss_pred HHhccceecCCCchhchhhHHHHH----HHHHHHHHHH---hCCCCCCCCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 8864 66788888753 555555 3444444332 2333 5789999999987553 36689999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 366 ~~a~~ 370 (445)
T TIGR02915 366 KRAVI 370 (445)
T ss_pred HHHHH
Confidence 99874
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.1e-07 Score=102.52 Aligned_cols=92 Identities=14% Similarity=0.153 Sum_probs=68.3
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.|++.+.+.+.......-.. ..+.|++||++|+++.. .++.||+.+|-
T Consensus 91 ~~I~idqIR~l~~~~~~~p~~-------------g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----- 139 (319)
T PRK08769 91 TEIVIEQVREISQKLALTPQY-------------GIAQVVIVDPADAINRA-------------ACNALLKTLEE----- 139 (319)
T ss_pred ccccHHHHHHHHHHHhhCccc-------------CCcEEEEeccHhhhCHH-------------HHHHHHHHhhC-----
Confidence 457788877766543322111 14679999999999876 56699999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+.+||..+ ++|+.+.|.++||+.. +.|.+++.++..+.|.
T Consensus 140 -----Pp~~~~fiL~~----~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 140 -----PSPGRYLWLIS----AQPARLPATIRSRCQR-LEFKLPPAHEALAWLL 182 (319)
T ss_pred -----CCCCCeEEEEE----CChhhCchHHHhhheE-eeCCCcCHHHHHHHHH
Confidence 34556666653 5788999999999986 5899999998888773
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=113.03 Aligned_cols=97 Identities=19% Similarity=0.317 Sum_probs=64.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---Cchhhhcc
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGR 1094 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~gR 1094 (1165)
..+++|||+|.+.+. .+.|..|+.++..-. .....++|++. ..|.+ +.+.|.+|
T Consensus 195 ~dvLlIDDi~~l~~~-----------~~~q~elf~~~n~l~--------~~~k~iIitsd----~~p~~l~~l~~rL~SR 251 (440)
T PRK14088 195 VDVLLIDDVQFLIGK-----------TGVQTELFHTFNELH--------DSGKQIVICSD----REPQKLSEFQDRLVSR 251 (440)
T ss_pred CCEEEEechhhhcCc-----------HHHHHHHHHHHHHHH--------HcCCeEEEECC----CCHHHHHHHHHHHhhH
Confidence 469999999998654 236777776654211 11122333321 23443 55788899
Q ss_pred CC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1095 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1095 ~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|. ..+.|++++.+.+..||+ ..++.+++ .++++++.+||+...
T Consensus 252 ~~~gl~v~i~~pd~e~r~~IL~-----------~~~~~~~~--~l~~ev~~~Ia~~~~ 296 (440)
T PRK14088 252 FQMGLVAKLEPPDEETRKKIAR-----------KMLEIEHG--ELPEEVLNFVAENVD 296 (440)
T ss_pred HhcCceEeeCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHhccc
Confidence 84 567999999999999998 23334455 678999999987653
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.48 E-value=3e-08 Score=98.31 Aligned_cols=34 Identities=38% Similarity=0.591 Sum_probs=24.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
|+||+|+||+|||++|+++|+.++..|.++.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tp 34 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTP 34 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--T
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecC
Confidence 6899999999999999999999999999998853
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=105.38 Aligned_cols=130 Identities=19% Similarity=0.249 Sum_probs=89.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|.+||||||.+... +|..|+.+++.+.+..-.+ .....++-+|+++.-.. .....|.++|.
T Consensus 228 ~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~ 294 (463)
T TIGR01818 228 DGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLF 294 (463)
T ss_pred CCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHH
Confidence 5789999999999866 6778999888654332111 11122455777764321 12345888999
Q ss_pred CCCC-eeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. ..|.++||. .+|+..++ ..++.++... .|.. ..|+++|++.|..+.. -+..|-|++++
T Consensus 295 ~rl~~~~i~lPpLr~R~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgNvreL~~~~ 360 (463)
T TIGR01818 295 HRLNVIRIHLPPLRERREDIPRLA----RHFLALAARE---LDVEPKLLDPEALERLKQLRW-------PGNVRQLENLC 360 (463)
T ss_pred HHhCcceecCCCcccchhhHHHHH----HHHHHHHHHH---hCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHHH
Confidence 9987 488999999 78888887 3444444332 2332 3689999999987643 46789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++++.
T Consensus 361 ~~~~~ 365 (463)
T TIGR01818 361 RWLTV 365 (463)
T ss_pred HHHHH
Confidence 99874
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.4e-06 Score=110.00 Aligned_cols=118 Identities=21% Similarity=0.287 Sum_probs=78.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeeccC--ceEEEEecCCC-----CCCCC----
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGIIKT--DHILFIASGAF-----HLAKP---- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~~t--~~ilfI~~gaf-----~~~~p---- 1084 (1165)
..|++||||||++... .|..|+..||..+++ .|-|...+ ....+||+..- ...++
T Consensus 557 dgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~en 623 (915)
T PTZ00111 557 NGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIEN 623 (915)
T ss_pred CCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccc
Confidence 5799999999999776 889999999988775 45553333 24556666432 22222
Q ss_pred CCCchhhhccCCeE-EEcCCCCHHHHHHH----Hhh-------------------------------------hHHHhHH
Q psy2392 1085 SDLIPELQGRFPIR-VELDSLSISDFTRI----MTS-------------------------------------TNVCLTK 1122 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~-v~l~~l~~~~l~~i----l~~-------------------------------------~~~~l~~ 1122 (1165)
-+|.|.|++||.++ +.++.++++.=.+| ++. ....+++
T Consensus 624 i~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLr 703 (915)
T PTZ00111 624 INISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLR 703 (915)
T ss_pred cCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHH
Confidence 35789999999654 55666665543332 210 1234577
Q ss_pred HHHHHHhhcCCceEeCHHHHHHHHHH
Q psy2392 1123 QYEALLATEGIKIEFVDDGIQRLAEI 1148 (1165)
Q Consensus 1123 q~~~l~~~egv~l~~~~~ai~~ia~~ 1148 (1165)
.|-...+. .++-.++++|.+.|.+.
T Consensus 704 kYI~YAR~-~~~P~Ls~eA~~~i~~~ 728 (915)
T PTZ00111 704 MYIKFSKL-HCFPKLSDEAKKVITRE 728 (915)
T ss_pred HHHHHHhc-cCCCCCCHHHHHHHHHH
Confidence 77776654 57778999999988763
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.4e-07 Score=112.03 Aligned_cols=100 Identities=12% Similarity=0.203 Sum_probs=66.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC-
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~- 1095 (1165)
+..+++||+|+.+.... ..|..|.-++..-. ....-++|++ ...-..-..+.+.|.+||
T Consensus 377 ~~DLLlIDDIq~l~gke-----------~tqeeLF~l~N~l~--------e~gk~IIITS-d~~P~eL~~l~~rL~SRf~ 436 (617)
T PRK14086 377 EMDILLVDDIQFLEDKE-----------STQEEFFHTFNTLH--------NANKQIVLSS-DRPPKQLVTLEDRLRNRFE 436 (617)
T ss_pred cCCEEEEehhccccCCH-----------HHHHHHHHHHHHHH--------hcCCCEEEec-CCChHhhhhccHHHHhhhh
Confidence 45699999999997542 25677777766321 1112222322 211111124668899998
Q ss_pred -CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 -PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 -~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+.|++++++.+....||. ..++..|+ .+++|++++|+...
T Consensus 437 ~GLvv~I~~PD~EtR~aIL~-----------kka~~r~l--~l~~eVi~yLa~r~ 478 (617)
T PRK14086 437 WGLITDVQPPELETRIAILR-----------KKAVQEQL--NAPPEVLEFIASRI 478 (617)
T ss_pred cCceEEcCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHhc
Confidence 7889999999999999998 33444555 77899999998764
|
|
| >KOG1969|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=104.85 Aligned_cols=111 Identities=18% Similarity=0.232 Sum_probs=70.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccC--ceeeee-----------ceeecCceEEEEEeCCcccCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEG--TTVNTK-----------YGIIKTDHILFIASGAFHLAK 485 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg--~~v~~~-----------~~~~~t~~ilfI~~gaf~~~~ 485 (1165)
++.-++|||||-.-+ +..+.+|.+++. ...+.+ -+..-++.|+-||.-
T Consensus 387 rP~CLViDEIDGa~~-------------~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd------ 447 (877)
T KOG1969|consen 387 RPVCLVIDEIDGAPR-------------AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND------ 447 (877)
T ss_pred CcceEEEecccCCcH-------------HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC------
Confidence 355677999995432 244466666652 111111 123346778888872
Q ss_pred CCCCchhhh--CCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCc
Q psy2392 486 PSDLIPELQ--GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGA 563 (1165)
Q Consensus 486 p~~l~pel~--~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GA 563 (1165)
-..|+|+ .-+..++.|.+++.+-|.+-|. .....+|+ .++..++..|++++. .+.
T Consensus 448 --LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~-----------~IC~rE~m--r~d~~aL~~L~el~~--------~DI 504 (877)
T KOG1969|consen 448 --LYAPALRPLRPFAEIIAFVPPSQSRLVERLN-----------EICHRENM--RADSKALNALCELTQ--------NDI 504 (877)
T ss_pred --ccchhhhhcccceEEEEecCCChhHHHHHHH-----------HHHhhhcC--CCCHHHHHHHHHHhc--------chH
Confidence 2467776 3477788999999998887763 34455666 677899999999983 455
Q ss_pred chhHHHHH
Q psy2392 564 RRLYTAME 571 (1165)
Q Consensus 564 R~l~~~ie 571 (1165)
|.=-+.+.
T Consensus 505 RsCINtLQ 512 (877)
T KOG1969|consen 505 RSCINTLQ 512 (877)
T ss_pred HHHHHHHH
Confidence 55444443
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.8e-07 Score=100.19 Aligned_cols=93 Identities=18% Similarity=0.280 Sum_probs=61.4
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC--C-CchhhhccC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS--D-LIPELQGRF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~--d-l~pel~gR~ 1095 (1165)
+.++||+||.+.. .|..|..++.. .......+.|++.. .|. . +.|.|.+||
T Consensus 89 ~~l~iDDi~~~~~--------------~~~~lf~l~n~--------~~~~g~~ilits~~----~p~~~~~~~~dL~SRl 142 (226)
T PRK09087 89 GPVLIEDIDAGGF--------------DETGLFHLINS--------VRQAGTSLLMTSRL----WPSSWNVKLPDLKSRL 142 (226)
T ss_pred CeEEEECCCCCCC--------------CHHHHHHHHHH--------HHhCCCeEEEECCC----ChHHhccccccHHHHH
Confidence 6899999997631 24456555432 11112233333321 232 2 469999998
Q ss_pred C--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1096 P--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1096 ~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. ..+++++++.+++.+||+ ..+...|+ .+++|++++|++.+.
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~-----------~~~~~~~~--~l~~ev~~~La~~~~ 186 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIF-----------KLFADRQL--YVDPHVVYYLVSRME 186 (226)
T ss_pred hCCceeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhh
Confidence 3 568999999999999999 33344455 789999999998765
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.7e-06 Score=104.45 Aligned_cols=130 Identities=19% Similarity=0.245 Sum_probs=86.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccC---CCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLA---KPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~---~p~~l~pel~ 494 (1165)
..|++||||||.+... +|..|+..++.+.+..-.+ .....++-+|++...... ....|.++|.
T Consensus 237 ~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~ 303 (457)
T PRK11361 237 NEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLF 303 (457)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHH
Confidence 5789999999999876 6778999988654332111 111235667777543211 2235788888
Q ss_pred CCC-CeeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~-~~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+ ...|.++||. .+|+..++ ..++.++... .+.. +.+++++++.|..+.. .+..|-|+++|
T Consensus 304 ~~l~~~~i~~ppLreR~~di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgNv~eL~~~~ 369 (457)
T PRK11361 304 YRLNVIHLILPPLRDRREDISLLA----NHFLQKFSSE---NQRDIIDIDPMAMSLLTAWSW-------PGNIRELSNVI 369 (457)
T ss_pred HHhccceecCCChhhchhhHHHHH----HHHHHHHHHH---cCCCCCCcCHHHHHHHHcCCC-------CCcHHHHHHHH
Confidence 776 4667788887 36666555 3445444332 2444 5799999999987553 46799999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 370 ~~~~~ 374 (457)
T PRK11361 370 ERAVV 374 (457)
T ss_pred HHHHH
Confidence 99764
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.4e-06 Score=100.27 Aligned_cols=70 Identities=13% Similarity=0.269 Sum_probs=58.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+.+|... .|.+||... .+|+.+.|.+++||-.
T Consensus 108 ~KV~iI~~a~~m~~~-------------AaNaLLKtLEEPp----------~~~~fiL~t----~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 108 NKVVYIQGAERLTEA-------------AANALLKTLEEPR----------PNTYFLLQA----DLSAALLPTIYSRCQT 160 (325)
T ss_pred ceEEEEechhhhCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChHhCchHHHhhceE
Confidence 459999999999987 7889999999743 445666653 4789999999999987
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+++.+++.+.|.+
T Consensus 161 -~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 161 -WLIHPPEEQQALDWLQA 177 (325)
T ss_pred -EeCCCCCHHHHHHHHHH
Confidence 58999999999988874
|
|
| >KOG2035|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-06 Score=96.48 Aligned_cols=93 Identities=19% Similarity=0.372 Sum_probs=73.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...+|.|-|.|+++.. .|-.|...||...-+++. ..+ ++.-|.++|++++||-
T Consensus 127 ~fKvvvi~ead~LT~d-------------AQ~aLRRTMEkYs~~~Rl--------Il~------cns~SriIepIrSRCl 179 (351)
T KOG2035|consen 127 PFKVVVINEADELTRD-------------AQHALRRTMEKYSSNCRL--------ILV------CNSTSRIIEPIRSRCL 179 (351)
T ss_pred ceEEEEEechHhhhHH-------------HHHHHHHHHHHHhcCceE--------EEE------ecCcccchhHHhhhee
Confidence 3568999999999987 899999999976655543 222 2345789999999976
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. |..+.++.+|+..+|. ..++.||..+ .++.+.+||+.+-
T Consensus 180 ~-iRvpaps~eeI~~vl~-----------~v~~kE~l~l--p~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 180 F-IRVPAPSDEEITSVLS-----------KVLKKEGLQL--PKELLKRIAEKSN 219 (351)
T ss_pred E-EeCCCCCHHHHHHHHH-----------HHHHHhcccC--cHHHHHHHHHHhc
Confidence 4 5899999999999998 6677888854 5888888887653
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.1e-07 Score=103.92 Aligned_cols=45 Identities=49% Similarity=0.693 Sum_probs=40.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.||+||+.||+.+..+..- ..|+||+||||||||++|+.+...+.
T Consensus 179 ~DV~GQ~~AKrAleiAAAG----------------gHnLl~~GpPGtGKTmla~Rl~~lLP 223 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAG----------------GHNLLLVGPPGTGKTMLASRLPGLLP 223 (490)
T ss_pred hhhcCcHHHHHHHHHHHhc----------------CCcEEEecCCCCchHHhhhhhcccCC
Confidence 6899999999999988763 27899999999999999999888874
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-06 Score=101.06 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=71.1
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.|++.+.+.+.......-.. ..+.|++||++|+++.. .++.||+.+|.
T Consensus 110 ~~I~idqiR~l~~~~~~~~~~-------------~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----- 158 (342)
T PRK06964 110 KEIKIEQVRALLDFCGVGTHR-------------GGARVVVLYPAEALNVA-------------AANALLKTLEE----- 158 (342)
T ss_pred cccCHHHHHHHHHHhccCCcc-------------CCceEEEEechhhcCHH-------------HHHHHHHHhcC-----
Confidence 468888888877543322111 25679999999999876 56699999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
...+++||..+ ++|..+.|.++||+. .+.|.+++.+++.+.|.
T Consensus 159 -----Pp~~t~fiL~t----~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 159 -----PPPGTVFLLVS----ARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLA 201 (342)
T ss_pred -----CCcCcEEEEEE----CChhhCcHHHHhcCE-EEEecCCCHHHHHHHHH
Confidence 35667777763 679999999999995 57999999999888884
|
|
| >KOG2170|consensus | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.6e-06 Score=93.47 Aligned_cols=64 Identities=28% Similarity=0.388 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+...|+..|.+.++||--|++.|..++...|.- +. +.+|-.+-|+|+|||||..+++.||+.+
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n-----~~--p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWAN-----PN--PRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcC-----CC--CCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 3467889999999999999999999999876532 11 2245799999999999999999999988
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=100.70 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+++|... .+.+||... ++|+.++|.+++||-.
T Consensus 114 ~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp----------~~~~fiL~~----~~~~~lLpTIrSRCq~ 166 (319)
T PRK08769 114 AQVVIVDPADAINRA-------------ACNALLKTLEEPS----------PGRYLWLIS----AQPARLPATIRSRCQR 166 (319)
T ss_pred cEEEEeccHhhhCHH-------------HHHHHHHHhhCCC----------CCCeEEEEE----CChhhCchHHHhhheE
Confidence 359999999999876 7889999999743 333455443 5789999999999987
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+++.++..+.|.+
T Consensus 167 -i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 167 -LEFKLPPAHEALAWLLA 183 (319)
T ss_pred -eeCCCcCHHHHHHHHHH
Confidence 58999999999988874
|
|
| >KOG0990|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.8e-07 Score=99.38 Aligned_cols=108 Identities=22% Similarity=0.313 Sum_probs=79.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
....|++||.|..+.. .|++|-..+|..++++++- .| .+.|..+.|++++||.
T Consensus 131 ~fKlvILDEADaMT~~-------------AQnALRRviek~t~n~rF~--------ii------~n~~~ki~pa~qsRct 183 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-------------AQNALRRVIEKYTANTRFA--------TI------SNPPQKIHPAQQSRCT 183 (360)
T ss_pred ceeEEEecchhHhhHH-------------HHHHHHHHHHHhccceEEE--------Ee------ccChhhcCchhhcccc
Confidence 5779999999999877 7778988888766665442 11 2457789999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
.. .|.||+......++.+ ..+.+ ++..+++++..+++.. .++.|...+.|.....
T Consensus 184 rf-rf~pl~~~~~~~r~sh-----------i~e~e--~~~~~~~~~~a~~r~s--------~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 184 RF-RFAPLTMAQQTERQSH-----------IRESE--QKETNPEGYSALGRLS--------VGDMRVALNYLQSILK 238 (360)
T ss_pred cC-CCCCCChhhhhhHHHH-----------HHhcc--hhhcCHHHHHHHHHHh--------HHHHHHHHHHHHHHHH
Confidence 64 9999999888887741 12222 3467788888887776 4677888888876653
|
|
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.8e-07 Score=107.63 Aligned_cols=101 Identities=16% Similarity=0.314 Sum_probs=67.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~g 1093 (1165)
+.-+++||||+.+.... ..|..|..++..-.-.. ..+++.+.+ .|. .+.+.|.+
T Consensus 206 ~~dvLiIDDiq~l~~k~-----------~~~e~lf~l~N~~~~~~-------k~iIltsd~-----~P~~l~~l~~rL~S 262 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKE-----------KTNEIFFTIFNNFIEND-------KQLFFSSDK-----SPELLNGFDNRLIT 262 (450)
T ss_pred cCCEEEEeccccccCCH-----------HHHHHHHHHHHHHHHcC-------CcEEEECCC-----CHHHHhhccHHHHH
Confidence 45699999999886531 25667776665311111 122222222 233 35688889
Q ss_pred cC--CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1094 RF--PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1094 R~--~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
|| .+.+.|++|+.+++.+||+ ..++..|+.+.++++++++||..+-.
T Consensus 263 R~~~Gl~~~L~~pd~e~r~~iL~-----------~~~~~~gl~~~l~~evl~~Ia~~~~g 311 (450)
T PRK14087 263 RFNMGLSIAIQKLDNKTATAIIK-----------KEIKNQNIKQEVTEEAINFISNYYSD 311 (450)
T ss_pred HHhCCceeccCCcCHHHHHHHHH-----------HHHHhcCCCCCCCHHHHHHHHHccCC
Confidence 98 4788999999999999999 23344566557999999999987653
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.6e-07 Score=103.56 Aligned_cols=119 Identities=18% Similarity=0.304 Sum_probs=87.8
Q ss_pred EEEEEeCCcccCCCCC-CchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 473 ILFIASGAFHLAKPSD-LIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 473 ilfI~~gaf~~~~p~~-l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
|.+|+++ +.+|+. ++|+|++|+.+ ++|++|+.+|+.++|+ +.+.. .. .+ ...++.+++++++.|++.|
T Consensus 9 i~LIGAT---TENP~f~vn~ALlSR~~v-~~l~~L~~~di~~il~---ral~~-~~-~~--~~~~~~i~~~al~~ia~~a 77 (300)
T PRK14700 9 IILIGAT---TENPTYYLNDALVSRLFI-LRLKRLSLVATQKLIE---KALSQ-DE-VL--AKHKFKIDDGLYNAMHNYN 77 (300)
T ss_pred EEEEeec---CCCccceecHhhhhhhhe-eeecCCCHHHHHHHHH---HHHHh-hh-cc--CCcCCCcCHHHHHHHHHhc
Confidence 5567763 477775 99999999977 4899999999999996 33322 11 11 1235789999999999988
Q ss_pred HhccccCCccCcchhHHHHHHHHHHhhcccCCCeeEEcccccccccccCccccc---------cccccccc
Q psy2392 552 YCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINED---------LSRYDSGM 613 (1165)
Q Consensus 552 ~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~d---------ls~~i~~~ 613 (1165)
+++||...+.+|.++.- ..+ +....||.+.|++.++.....+| +|+|+||+
T Consensus 78 --------~GDaR~aLN~LE~a~~~-~~~--~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSi 137 (300)
T PRK14700 78 --------EGDCRKILNLLERMFLI-STR--GDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSV 137 (300)
T ss_pred --------CCHHHHHHHHHHHHHhh-ccc--cCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHh
Confidence 79999999999997631 111 11245899999888876554444 88999988
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=103.99 Aligned_cols=129 Identities=20% Similarity=0.300 Sum_probs=84.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece--eecCceEEEEEeCCccc---CCCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHL---AKPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~--~~~t~~ilfI~~gaf~~---~~p~~l~pel 493 (1165)
.+|.+||||||.+... +|..|+..++.+.+.. .| .....++-+|+++.... .....|.++|
T Consensus 228 ~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~-~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l 293 (444)
T PRK15115 228 EGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRP-LGSNRDIDIDVRIISATHRDLPKAMARGEFREDL 293 (444)
T ss_pred CCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEe-CCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHH
Confidence 5789999999999877 6778999998665421 11 11123567777754321 0112467777
Q ss_pred hCCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 494 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 494 ~~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
..|+. ..|.++||.+ +|+..++ ..++.++.. ..+.. ..++++|++.|..+.. .+..|-|+++
T Consensus 294 ~~~l~~~~i~lPpLr~R~eDi~~l~----~~~l~~~~~---~~~~~~~~~~~~a~~~L~~~~W-------pgNvreL~~~ 359 (444)
T PRK15115 294 YYRLNVVSLKIPALAERTEDIPLLA----NHLLRQAAE---RHKPFVRAFSTDAMKRLMTASW-------PGNVRQLVNV 359 (444)
T ss_pred HHhhceeeecCCChHhccccHHHHH----HHHHHHHHH---HhCCCCCCcCHHHHHHHHhCCC-------CChHHHHHHH
Confidence 77765 5677888875 4666666 344444332 22333 3589999999987553 4678999999
Q ss_pred HHHHHH
Q psy2392 570 MEKLLE 575 (1165)
Q Consensus 570 ie~~l~ 575 (1165)
|++++.
T Consensus 360 i~~~~~ 365 (444)
T PRK15115 360 IEQCVA 365 (444)
T ss_pred HHHHHH
Confidence 999764
|
|
| >KOG0743|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=100.67 Aligned_cols=38 Identities=26% Similarity=0.475 Sum_probs=34.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~ 853 (1165)
.++.|||||||||||++.-|+|+.++...+-++-++..
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~ 272 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK 272 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc
Confidence 47899999999999999999999999988888877643
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.9e-06 Score=100.00 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=69.7
Q ss_pred eeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee
Q psy2392 385 KIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK 464 (1165)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~ 464 (1165)
.|+|.+++.+.......-.. ..+.|++||++|+++.. .++.||+.+|.
T Consensus 87 ~I~idqiR~l~~~~~~~~~~-------------g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE------ 134 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARL-------------GGAKVVWLPDAALLTDA-------------AANALLKTLEE------ 134 (334)
T ss_pred cCCHHHHHHHHHHHhhcccc-------------CCceEEEEcchHhhCHH-------------HHHHHHHHhcC------
Confidence 47788888776554322221 25779999999999977 56699999996
Q ss_pred ceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHH
Q psy2392 465 YGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIM 515 (1165)
Q Consensus 465 ~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il 515 (1165)
...+.+||... .+|+.+.|.++||+.. +.|.+++.++..+.|
T Consensus 135 ----Pp~~t~fiL~t----~~~~~lLpTIrSRCq~-~~~~~~~~~~~~~~L 176 (334)
T PRK07993 135 ----PPENTWFFLAC----REPARLLATLRSRCRL-HYLAPPPEQYALTWL 176 (334)
T ss_pred ----CCCCeEEEEEE----CChhhChHHHHhcccc-ccCCCCCHHHHHHHH
Confidence 35667777663 5799999999999986 699999999888777
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=92.87 Aligned_cols=60 Identities=23% Similarity=0.371 Sum_probs=45.6
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 850 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~s 850 (1165)
++++|.+..++.|....... -.|. +..++||||+.|||||+++|++...+ +..++.++..
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~F--l~G~--------pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQF--LQGL--------PANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHH--HcCC--------CCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 57889999999998877654 1121 14799999999999999999999988 4444554443
|
|
| >KOG2035|consensus | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.7e-06 Score=91.48 Aligned_cols=92 Identities=20% Similarity=0.387 Sum_probs=68.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.+|+|-|.|+++.. .|.+|-.-||...-+++ ++.+| +.-|.++|++++|+-
T Consensus 127 ~fKvvvi~ead~LT~d-------------AQ~aLRRTMEkYs~~~R--------lIl~c------ns~SriIepIrSRCl 179 (351)
T KOG2035|consen 127 PFKVVVINEADELTRD-------------AQHALRRTMEKYSSNCR--------LILVC------NSTSRIIEPIRSRCL 179 (351)
T ss_pred ceEEEEEechHhhhHH-------------HHHHHHHHHHHHhcCce--------EEEEe------cCcccchhHHhhhee
Confidence 6789999999999977 77799988986443321 22222 345789999999974
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
.|....++.+|+..+|. ..++.+|+.+. ++.+..|++.+
T Consensus 180 -~iRvpaps~eeI~~vl~-----------~v~~kE~l~lp--~~~l~rIa~kS 218 (351)
T KOG2035|consen 180 -FIRVPAPSDEEITSVLS-----------KVLKKEGLQLP--KELLKRIAEKS 218 (351)
T ss_pred -EEeCCCCCHHHHHHHHH-----------HHHHHhcccCc--HHHHHHHHHHh
Confidence 35889999999999984 33556677554 88888888766
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-06 Score=104.32 Aligned_cols=115 Identities=19% Similarity=0.239 Sum_probs=76.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
..|++||||||.+... +|..|+.+++...+.. .|.. ...++-+|++..-.. .....|.++|
T Consensus 237 ~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~-~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l 302 (457)
T PRK11361 237 NEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFER-IGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDL 302 (457)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEe-CCCCceeeeceEEEEeCCCCHHHHHHcCCchHHH
Confidence 5799999999999876 8999999998754332 2221 123466777764221 1223577788
Q ss_pred hccC-CeEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCc-eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~-l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+ .+.+.++||- .+|+..+.. ..+.++..- .|.. +.|+++|++.|..+....
T Consensus 303 ~~~l~~~~i~~ppLreR~~di~~l~~----~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~wpg 360 (457)
T PRK11361 303 FYRLNVIHLILPPLRDRREDISLLAN----HFLQKFSSE---NQRDIIDIDPMAMSLLTAWSWPG 360 (457)
T ss_pred HHHhccceecCCChhhchhhHHHHHH----HHHHHHHHH---cCCCCCCcCHHHHHHHHcCCCCC
Confidence 8776 5667889997 467766655 555555432 2433 478999999988765544
|
|
| >KOG1969|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.5e-06 Score=103.51 Aligned_cols=37 Identities=35% Similarity=0.571 Sum_probs=34.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
.+-+||+||||-||||||+.+|+..|...+.+++|+=
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe 362 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE 362 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc
Confidence 4788899999999999999999999999999999984
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=103.77 Aligned_cols=115 Identities=20% Similarity=0.297 Sum_probs=75.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+..++...+ ++.|.- ...++-+|++..... .....|.++|
T Consensus 228 ~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~-~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l 293 (444)
T PRK15115 228 EGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKV-RPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDL 293 (444)
T ss_pred CCCEEEEEccccCCHH-------------HHHHHHHHHhhCCE-EeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHH
Confidence 5799999999999877 89999999987655 222211 123567788765321 0112456666
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCce-EeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI-EFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l-~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+. ..+.++||-+ +|+..++. ..+.++..- .+..+ .|+++|++.|..+....
T Consensus 294 ~~~l~~~~i~lPpLr~R~eDi~~l~~----~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~Wpg 351 (444)
T PRK15115 294 YYRLNVVSLKIPALAERTEDIPLLAN----HLLRQAAER---HKPFVRAFSTDAMKRLMTASWPG 351 (444)
T ss_pred HHhhceeeecCCChHhccccHHHHHH----HHHHHHHHH---hCCCCCCcCHHHHHHHHhCCCCC
Confidence 66654 5678888875 57776666 455554332 23222 58999999998776655
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=104.00 Aligned_cols=115 Identities=20% Similarity=0.301 Sum_probs=76.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++||||||.+... +|..|+.+++...+.. .|.. ..-++-+|++..... .....|.++|
T Consensus 233 ~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~-~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L 298 (445)
T TIGR02915 233 HGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIER-LGGREEIPVDVRIVCATNQDLKRMIAEGTFREDL 298 (445)
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEe-CCCCceeeeceEEEEecCCCHHHHHHcCCccHHH
Confidence 6799999999999876 9999999998765432 2221 112456677754321 1124577888
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCc-eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~-l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+ ...|+++||-+ +|+..+.. ..+.++..-. |.. ..|+++|++.|..+..-.
T Consensus 299 ~~~l~~~~i~lPpLr~R~~Di~~l~~----~~l~~~~~~~---~~~~~~~~~~a~~~L~~~~wpg 356 (445)
T TIGR02915 299 FYRIAEISITIPPLRSRDGDAVLLAN----AFLERFAREL---KRKTKGFTDDALRALEAHAWPG 356 (445)
T ss_pred HHHhccceecCCCchhchhhHHHHHH----HHHHHHHHHh---CCCCCCCCHHHHHHHHhCCCCC
Confidence 8885 46678999965 46666655 5555554433 332 478999999998766544
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.2e-06 Score=96.22 Aligned_cols=70 Identities=14% Similarity=0.234 Sum_probs=58.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. .++.||+.+|. ...+.+||... ++|+.+.|.++||+.
T Consensus 108 ~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE----------Pp~~t~fiL~t----~~~~~lLpTI~SRCq 160 (319)
T PRK06090 108 GYRLFVIEPADAMNES-------------ASNALLKTLEE----------PAPNCLFLLVT----HNQKRLLPTIVSRCQ 160 (319)
T ss_pred CceEEEecchhhhCHH-------------HHHHHHHHhcC----------CCCCeEEEEEE----CChhhChHHHHhcce
Confidence 4679999999999876 56699999996 34567777663 579999999999998
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
. +.|.+++.++..+.|.
T Consensus 161 ~-~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 161 Q-WVVTPPSTAQAMQWLK 177 (319)
T ss_pred e-EeCCCCCHHHHHHHHH
Confidence 5 5999999998887773
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=102.38 Aligned_cols=36 Identities=36% Similarity=0.571 Sum_probs=34.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+.+||-|.||+|||+|..+||+..|..+++++.|+-
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ 1579 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ 1579 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeecccc
Confidence 689999999999999999999999999999999883
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=8.2e-07 Score=107.45 Aligned_cols=82 Identities=18% Similarity=0.335 Sum_probs=57.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeec--cCceEEEEecCC------CCC----CC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGA------FHL----AK 1083 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~--~t~~ilfI~~ga------f~~----~~ 1083 (1165)
+.|++|+|||+.+... +|..|+..||...++ .+.|.. ...++.+||+.+ |.. +.
T Consensus 294 ~gGvLfLDEi~e~~~~-------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~ 360 (506)
T PRK09862 294 HNGVLFLDELPEFERR-------------TLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCT 360 (506)
T ss_pred cCCEEecCCchhCCHH-------------HHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcC
Confidence 7899999999987665 899999999887764 333322 234566777643 210 11
Q ss_pred C-------CCCchhhhccCCeEEEcCCCCHHHHHH
Q psy2392 1084 P-------SDLIPELQGRFPIRVELDSLSISDFTR 1111 (1165)
Q Consensus 1084 p-------~dl~pel~gR~~i~v~l~~l~~~~l~~ 1111 (1165)
| ..+.+.|+.||.+.|++++++.+++.+
T Consensus 361 ~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~ 395 (506)
T PRK09862 361 PEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSK 395 (506)
T ss_pred HHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhc
Confidence 2 247789999999999999997765543
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.9e-06 Score=91.00 Aligned_cols=52 Identities=13% Similarity=0.183 Sum_probs=39.1
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCC--ceEeCHHHHHHHHHHHhc
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI--KIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv--~l~~~~~ai~~ia~~a~~ 1151 (1165)
..+.+|+..+++|++|+.+|+.+++. . .++..|. ...|++++++.|++.+-.
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~----~-------~l~~~g~~~~~~~~~~~~~~i~~~s~G 230 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIE----H-------RLERAGNRDAPVFSEGAFDAIHRFSRG 230 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHH----H-------HHHHcCCCCCCCcCHHHHHHHHHHcCC
Confidence 46889999999999999999998888 2 2222232 246899999999887654
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.2e-06 Score=98.47 Aligned_cols=219 Identities=22% Similarity=0.369 Sum_probs=137.9
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccccccccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~~Gyv 260 (1165)
.|||+..|...+.+.|..- + .....+|+.|.|||||..+|++|-+.. ..||+.+||+.+-+
T Consensus 224 ~iIG~S~am~~ll~~i~~V---A---------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe---- 287 (550)
T COG3604 224 GIIGRSPAMRQLLKEIEVV---A---------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE---- 287 (550)
T ss_pred cceecCHHHHHHHHHHHHH---h---------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch----
Confidence 8999999999988887642 0 023799999999999999999999988 68999999998743
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
+-.-+++|+.- .|.
T Consensus 288 ----sLlESELFGHe-----------------------------------------------------------KGA--- 301 (550)
T COG3604 288 ----SLLESELFGHE-----------------------------------------------------------KGA--- 301 (550)
T ss_pred ----HHHHHHHhccc-----------------------------------------------------------ccc---
Confidence 23345566540 111
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
|++.-+.|+ -......+
T Consensus 302 --------------------------------FTGA~~~r~-------------------------------GrFElAdG 318 (550)
T COG3604 302 --------------------------------FTGAINTRR-------------------------------GRFELADG 318 (550)
T ss_pred --------------------------------cccchhccC-------------------------------cceeecCC
Confidence 111000000 00112368
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCc--eEEEEEeCCccc---CCCCCCchhhhC
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD--HILFIASGAFHL---AKPSDLIPELQG 495 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~--~ilfI~~gaf~~---~~p~~l~pel~~ 495 (1165)
|-+|+|||--+-.+ +|.-||..+-.+.+. +.|.-.|- .+=+||+++-.. ..--.|..-|.-
T Consensus 319 GTLFLDEIGelPL~-------------lQaKLLRvLQegEie-RvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYy 384 (550)
T COG3604 319 GTLFLDEIGELPLA-------------LQAKLLRVLQEGEIE-RVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYY 384 (550)
T ss_pred CeEechhhccCCHH-------------HHHHHHHHHhhccee-ecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhh
Confidence 99999999988766 777888887533322 12211111 244678765321 112236666666
Q ss_pred CCCee-EecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCC-eeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 496 RFPIR-VELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 496 R~~~~-v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i-~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
|+.++ +.++||-+ +|+--+. ..++++... ..|. .+.++.+|++.|.++.+ -+..|-|.++|+
T Consensus 385 RLsV~Pl~lPPLRER~~DIplLA----~~Fle~~~~---~~gr~~l~ls~~Al~~L~~y~w-------PGNVRELen~ve 450 (550)
T COG3604 385 RLSVFPLELPPLRERPEDIPLLA----GYFLEKFRR---RLGRAILSLSAEALELLSSYEW-------PGNVRELENVVE 450 (550)
T ss_pred cccccccCCCCcccCCccHHHHH----HHHHHHHHH---hcCCcccccCHHHHHHHHcCCC-------CCcHHHHHHHHH
Confidence 65532 24555543 3333333 334444433 3466 78999999999987664 377999999999
Q ss_pred HHHH
Q psy2392 572 KLLE 575 (1165)
Q Consensus 572 ~~l~ 575 (1165)
+.+-
T Consensus 451 Ravl 454 (550)
T COG3604 451 RAVL 454 (550)
T ss_pred HHHH
Confidence 9864
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.27 E-value=2e-06 Score=102.29 Aligned_cols=60 Identities=32% Similarity=0.492 Sum_probs=48.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
++|+|...+...+...+... .....++|+.|.+||||..+|+++-+.. +.||+.+||.-+
T Consensus 245 ~~Iig~S~~m~~~~~~akr~------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 245 DDIIGESPAMLRVLELAKRI------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred hhhccCCHHHHHHHHHHHhh------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 58889988776666655431 1125789999999999999999999988 689999999876
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.3e-06 Score=101.12 Aligned_cols=115 Identities=20% Similarity=0.299 Sum_probs=79.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee--ccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~--~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++...+. +.|. ....++-+|+++.-.. .....|.++|
T Consensus 228 ~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~-~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L 293 (463)
T TIGR01818 228 DGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFY-RVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDL 293 (463)
T ss_pred CCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEE-ECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHH
Confidence 5799999999999876 899999999865433 2221 1122456777765332 2234577899
Q ss_pred hccCC-eEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCc-eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~-l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+. +.+.++||. .+|+..++. ..+.++..-. |.. ..|+++|++.|.....-.
T Consensus 294 ~~rl~~~~i~lPpLr~R~~Di~~l~~----~~l~~~~~~~---~~~~~~~~~~a~~~L~~~~wpg 351 (463)
T TIGR01818 294 FHRLNVIRIHLPPLRERREDIPRLAR----HFLALAAREL---DVEPKLLDPEALERLKQLRWPG 351 (463)
T ss_pred HHHhCcceecCCCcccchhhHHHHHH----HHHHHHHHHh---CCCCCCcCHHHHHHHHhCCCCC
Confidence 99987 488999999 788888777 5555554332 322 368999999998665443
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-06 Score=97.12 Aligned_cols=93 Identities=15% Similarity=0.203 Sum_probs=69.2
Q ss_pred eeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee
Q psy2392 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 1061 (1165)
Q Consensus 982 ~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~ 1061 (1165)
+.|+|++.+.+...-.. .+ .-....|++||++|+++.. .++.||+.+|...
T Consensus 110 ~~I~idqiR~l~~~~~~-----------~~--~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp--- 160 (342)
T PRK06964 110 KEIKIEQVRALLDFCGV-----------GT--HRGGARVVVLYPAEALNVA-------------AANALLKTLEEPP--- 160 (342)
T ss_pred cccCHHHHHHHHHHhcc-----------CC--ccCCceEEEEechhhcCHH-------------HHHHHHHHhcCCC---
Confidence 45788888876643221 00 0013459999999999887 7789999999643
Q ss_pred eeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1062 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1062 k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
.+.+||..+ ++|..+.|.+++||- .+.|++++.+++.+.|.+
T Consensus 161 -------~~t~fiL~t----~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 161 -------PGTVFLLVS----ARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred -------cCcEEEEEE----CChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHH
Confidence 344666554 489999999999996 579999999999999974
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.1e-05 Score=93.74 Aligned_cols=118 Identities=21% Similarity=0.367 Sum_probs=75.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCc--eeeee-ceeecCceEEEEEeCCcccCCC--CCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT--TVNTK-YGIIKTDHILFIASGAFHLAKP--SDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~--~v~~~-~~~~~t~~ilfI~~gaf~~~~p--~~l~pel 493 (1165)
++||+++||+--+... +|+.||..++.+ .|.-. +..-+..+.++|+|. || .+|+|.|
T Consensus 144 nRGIlYvDEvnlL~d~-------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTm-----NPEeGeLrpqL 205 (423)
T COG1239 144 NRGILYVDEVNLLDDH-------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTM-----NPEEGELRPQL 205 (423)
T ss_pred cCCEEEEeccccccHH-------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeec-----Cccccccchhh
Confidence 7899999999888755 888999988764 22221 223344567788885 45 4699999
Q ss_pred hCCCCeeEecCCCCH-HHHHHHHhhhhH------hHHHHHHHH---------HhhcC-CeeEeCHHHHHHHHHHHHhc
Q psy2392 494 QGRFPIRVELDSLSI-SDFTRIMTSTNV------CLTKQYEAL---------LATEG-IKIEFVDDGIQRLAEIAYCI 554 (1165)
Q Consensus 494 ~~R~~~~v~~~~L~~-~~l~~Il~~~~~------~l~~~~~~l---------l~~~~-i~l~~~~~a~~~la~~a~~~ 554 (1165)
+-||...|....+.. ++..+|...-.. .+..++... .+..+ ..+..++++...++..|...
T Consensus 206 lDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~ 283 (423)
T COG1239 206 LDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARL 283 (423)
T ss_pred HhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHh
Confidence 999999888876554 444445431111 011111111 11222 34677889999999999874
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=1e-05 Score=93.02 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=57.9
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+.+|... .|.+||... ++|+.+.|.+.+||-.
T Consensus 109 ~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp----------~~t~fiL~t----~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 109 YRLFVIEPADAMNES-------------ASNALLKTLEEPA----------PNCLFLLVT----HNQKRLLPTIVSRCQQ 161 (319)
T ss_pred ceEEEecchhhhCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChhhChHHHHhccee
Confidence 359999999999877 7889999999743 344565543 4799999999999986
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|++++.++..+.|.+
T Consensus 162 -~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 162 -WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -EeCCCCCHHHHHHHHHH
Confidence 69999999999988874
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.7e-06 Score=94.09 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=58.2
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+.+|... .+.+||... .+|+.+.|.++|||-.
T Consensus 109 ~kV~iI~~ae~m~~~-------------AaNaLLKtLEEPp----------~~t~fiL~t----~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 109 AKVVWLPDAALLTDA-------------AANALLKTLEEPP----------ENTWFFLAC----REPARLLATLRSRCRL 161 (334)
T ss_pred ceEEEEcchHhhCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChhhChHHHHhcccc
Confidence 459999999999987 7789999999744 344665553 4799999999999996
Q ss_pred EEEcCCCCHHHHHHHHhh
Q psy2392 1098 RVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~ 1115 (1165)
+.|.+++.++..+.|.+
T Consensus 162 -~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 -HYLAPPPEQYALTWLSR 178 (334)
T ss_pred -ccCCCCCHHHHHHHHHH
Confidence 69999999999988863
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.2e-06 Score=95.96 Aligned_cols=92 Identities=13% Similarity=0.244 Sum_probs=66.0
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
+.|+|.+.+.+.......-.. ..+.|++||++|.+.+. .|+.||..+|...
T Consensus 91 ~~I~id~iR~l~~~~~~~p~~-------------~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~--- 141 (325)
T PRK08699 91 LQIKIDAVREIIDNVYLTSVR-------------GGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP--- 141 (325)
T ss_pred CCcCHHHHHHHHHHHhhCccc-------------CCceEEEEechhhCCHH-------------HHHHHHHHHHhCc---
Confidence 347888888766443322111 25779999999999876 5668999998521
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHh
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
.++.||.++ .+|+.+.|.+.+|+-+ +.|.+++.++..+.|.
T Consensus 142 -------~~~~~Ilvt----h~~~~ll~ti~SRc~~-~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 142 -------PQVVFLLVS----HAADKVLPTIKSRCRK-MVLPAPSHEEALAYLR 182 (325)
T ss_pred -------CCCEEEEEe----CChHhChHHHHHHhhh-hcCCCCCHHHHHHHHH
Confidence 234455542 5678899999999976 5899999999887773
|
|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.3e-06 Score=83.73 Aligned_cols=64 Identities=25% Similarity=0.354 Sum_probs=53.7
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+...|+..|++.++||.-|++.|..++...|.. ..+ .+|-.+.|+||||||||.+++.||+.+
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---~~p----~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---PNP----RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---CCC----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4677899999999999999999999999876322 122 245789999999999999999999996
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.8e-06 Score=99.26 Aligned_cols=130 Identities=20% Similarity=0.263 Sum_probs=83.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|++||||||.+.+. +|..|+..++.+.+....+ ....-++-+|++..-.. ..+..|.+.|.
T Consensus 233 ~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~ 299 (441)
T PRK10365 233 DGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLY 299 (441)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHH
Confidence 5899999999999876 6778999888665432111 01112344666643221 12345777777
Q ss_pred CCCC-eeEecCCCCHH--HHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~~--~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. ..+.++||-+. |+..++ ..++.++... .+.. ..+++++++.|..+.. .+..|-|++++
T Consensus 300 ~~l~~~~i~~ppLreR~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~L~~~~w-------pgN~reL~~~~ 365 (441)
T PRK10365 300 YRLNVVAIEVPSLRQRREDIPLLA----GHFLQRFAER---NRKAVKGFTPQAMDLLIHYDW-------PGNIRELENAV 365 (441)
T ss_pred HHhccceecCCChhhcchhHHHHH----HHHHHHHHHH---hCCCCCCcCHHHHHHHHhCCC-------CCHHHHHHHHH
Confidence 7764 56778888754 666665 3344443322 2322 4589999999987653 46789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 366 ~~~~~ 370 (441)
T PRK10365 366 ERAVV 370 (441)
T ss_pred HHHHH
Confidence 99764
|
|
| >PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation [] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.4e-06 Score=75.04 Aligned_cols=66 Identities=32% Similarity=0.406 Sum_probs=55.6
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcc
Q psy2392 506 LSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580 (1165)
Q Consensus 506 L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~ 580 (1165)
|+.+++.+|+. ..+.+..+.+..+|+.+.|+++++++|++.|++ +++|||+|+++|++.+++..++
T Consensus 1 L~~~~l~~I~~----~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~-----~~~GAR~l~r~i~~~i~~~la~ 66 (81)
T PF10431_consen 1 LSEEDLEKIAD----LQLKKLNERLKEKGIELEFDDAVVDYLAEKGYD-----PEYGARPLRRIIEREIEPPLAD 66 (81)
T ss_dssp --HHHHHHHHH----SHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHH-----TTTTTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH----HHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcc-----cCCCHHHHHHHHHHHHHHHHHH
Confidence 68899999994 567777777788999999999999999999998 6899999999999999877553
|
This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X .... |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=93.61 Aligned_cols=138 Identities=19% Similarity=0.286 Sum_probs=90.0
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCC---CchhhhCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGR 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~---l~pel~~R 496 (1165)
-.+++||.|+.+..+. ..|..|.-++.- ......- +|.++. ..|.. +.|-|.+|
T Consensus 176 ~dlllIDDiq~l~gk~-----------~~qeefFh~FN~--------l~~~~kq-Ivltsd---r~P~~l~~~~~rL~SR 232 (408)
T COG0593 176 LDLLLIDDIQFLAGKE-----------RTQEEFFHTFNA--------LLENGKQ-IVLTSD---RPPKELNGLEDRLRSR 232 (408)
T ss_pred cCeeeechHhHhcCCh-----------hHHHHHHHHHHH--------HHhcCCE-EEEEcC---CCchhhccccHHHHHH
Confidence 4589999999987552 234454433321 0011111 222321 22443 56999999
Q ss_pred CC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 497 FP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 497 ~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
|. +.+.+.+|+.+.+..||.. ..+..+ +.++++++.+|+..-. -..|-|..+++++.
T Consensus 233 ~~~Gl~~~I~~Pd~e~r~aiL~k-----------ka~~~~--~~i~~ev~~~la~~~~--------~nvReLegaL~~l~ 291 (408)
T COG0593 233 LEWGLVVEIEPPDDETRLAILRK-----------KAEDRG--IEIPDEVLEFLAKRLD--------RNVRELEGALNRLD 291 (408)
T ss_pred HhceeEEeeCCCCHHHHHHHHHH-----------HHHhcC--CCCCHHHHHHHHHHhh--------ccHHHHHHHHHHHH
Confidence 76 7889999999999999941 223344 4788999999998774 35677888888876
Q ss_pred HHhhcccCCCeeEEcccccccccccCccccc
Q psy2392 575 EEVSFNSNNISLLVDADYVNSRLGDLSINED 605 (1165)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~d 605 (1165)
.-..+. ...||.+.|++.+.+......
T Consensus 292 ~~a~~~----~~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 292 AFALFT----KRAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHhc----CccCcHHHHHHHHHHhhcccc
Confidence 655443 236899999999887765433
|
|
| >KOG2680|consensus | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=87.79 Aligned_cols=67 Identities=30% Similarity=0.505 Sum_probs=49.7
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC--CCceEEecccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTE 256 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~~ 256 (1165)
.++..+||-.|.++.-..+..- +-| . .....+|+.|+||+|||.+|-.+|+.+| .||..+.+|++.+
T Consensus 38 ~s~GmVGQ~~AR~Aagvi~kmi--~eg----k---iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~S 106 (454)
T KOG2680|consen 38 VSEGMVGQVKARKAAGVILKMI--REG----K---IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYS 106 (454)
T ss_pred ccccchhhHHHHHHhHHHHHHH--HcC----c---ccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeee
Confidence 3578999998876544433221 111 1 0126899999999999999999999995 7999999999854
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.3e-05 Score=94.35 Aligned_cols=205 Identities=24% Similarity=0.402 Sum_probs=131.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVGY 857 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~Gy 857 (1165)
..|+|+..|...+.+.|..- ......+|+.|.|||||-.+|++|-+.. ..||+.+||+-+-+
T Consensus 223 ~~iIG~S~am~~ll~~i~~V------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe--- 287 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVV------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE--- 287 (550)
T ss_pred ccceecCHHHHHHHHHHHHH------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch---
Confidence 47899999999998888642 1124789999999999999999999998 68999999998632
Q ss_pred cccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCC
Q psy2392 858 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld 937 (1165)
.-.-+++|+.- ++.|+++.. =|.|+++
T Consensus 288 -----sLlESELFGHe-------------------------------------KGAFTGA~~-----------~r~GrFE 314 (550)
T COG3604 288 -----SLLESELFGHE-------------------------------------KGAFTGAIN-----------TRRGRFE 314 (550)
T ss_pred -----HHHHHHHhccc-------------------------------------ccccccchh-----------ccCccee
Confidence 23345666553 345554421 1345442
Q ss_pred CeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc
Q psy2392 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 1017 (1165)
Q Consensus 938 ~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~ 1017 (1165)
.| .
T Consensus 315 ------------------------------------------------------------------------lA-----d 317 (550)
T COG3604 315 ------------------------------------------------------------------------LA-----D 317 (550)
T ss_pred ------------------------------------------------------------------------ec-----C
Confidence 22 6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCc--eEEEEecCCCCC---CCCCCCchhhh
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTD--HILFIASGAFHL---AKPSDLIPELQ 1092 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~--~ilfI~~gaf~~---~~p~dl~pel~ 1092 (1165)
.|-+|+|||--|.-. +|--||..+-...+. +.|.-.|- .+-.|||++=-. ..--.|..-|-
T Consensus 318 GGTLFLDEIGelPL~-------------lQaKLLRvLQegEie-RvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLY 383 (550)
T COG3604 318 GGTLFLDEIGELPLA-------------LQAKLLRVLQEGEIE-RVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLY 383 (550)
T ss_pred CCeEechhhccCCHH-------------HHHHHHHHHhhccee-ecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhh
Confidence 899999999877665 888888877543332 23432222 245677754211 01122444444
Q ss_pred cc---CCeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCC-ceEeCHHHHHHHHHHHhccC
Q psy2392 1093 GR---FPIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1093 gR---~~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv-~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
-| ||+ .++||-+ +|+--... ..+++...- .|. .+.|+.+|++.|.++.+-+|
T Consensus 384 yRLsV~Pl--~lPPLRER~~DIplLA~----~Fle~~~~~---~gr~~l~ls~~Al~~L~~y~wPGN 441 (550)
T COG3604 384 YRLSVFPL--ELPPLRERPEDIPLLAG----YFLEKFRRR---LGRAILSLSAEALELLSSYEWPGN 441 (550)
T ss_pred hccccccc--CCCCcccCCccHHHHHH----HHHHHHHHh---cCCcccccCHHHHHHHHcCCCCCc
Confidence 45 444 4677743 45543333 344444433 466 67999999999988777663
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.2e-05 Score=78.45 Aligned_cols=37 Identities=41% Similarity=0.683 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC---ceEEeccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP---FIKIEATKFT 255 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~---~i~ld~s~~~ 255 (1165)
.+++|+||||||||++++.+|..+... ++.++++...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 689999999999999999999999664 7777776543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.08 E-value=9.9e-06 Score=79.08 Aligned_cols=38 Identities=39% Similarity=0.651 Sum_probs=32.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCC---eEEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAP---FIKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~---fi~l~~se~~ 853 (1165)
..+++|+||||||||++++.++..+... ++.++++...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 3689999999999999999999999765 7777776643
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG2227|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00013 Score=85.57 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=77.8
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEe-CCcccCCCCCCchhhhCC--
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIAS-GAFHLAKPSDLIPELQGR-- 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~-gaf~~~~p~~l~pel~~R-- 496 (1165)
.=++++||+|.+.++.+. .|+.+.|=. ...+++++.|+- .+.. --.-|.|-|..|
T Consensus 257 ~~llVlDEmD~L~tr~~~-------------vLy~lFewp-------~lp~sr~iLiGiANslD--lTdR~LprL~~~~~ 314 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQT-------------VLYTLFEWP-------KLPNSRIILIGIANSLD--LTDRFLPRLNLDLT 314 (529)
T ss_pred eEEEEechhhHHhhcccc-------------eeeeehhcc-------cCCcceeeeeeehhhhh--HHHHHhhhhhhccC
Confidence 448899999999977544 566666532 234556555543 2211 112356666654
Q ss_pred -CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 497 -FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 497 -~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
-|-++.|+|++.+++++||+ +.|.++-. ..|-+.|++..|+.... ..++-|.+..++.+++|
T Consensus 315 ~~P~~l~F~PYTk~qI~~Il~-----------~rl~~~~t-~~~~~~Aie~~ArKvaa-----~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 315 IKPKLLVFPPYTKDQIVEILQ-----------QRLSEEST-SIFLNAAIELCARKVAA-----PSGDLRKALDVCRRAIE 377 (529)
T ss_pred CCCceeeecCCCHHHHHHHHH-----------HHHhcccc-cccchHHHHHHHHHhcc-----CchhHHHHHHHHHHHHH
Confidence 45688999999999999995 22333322 23445789988888765 36778999999888776
Q ss_pred H
Q psy2392 576 E 576 (1165)
Q Consensus 576 ~ 576 (1165)
=
T Consensus 378 I 378 (529)
T KOG2227|consen 378 I 378 (529)
T ss_pred H
Confidence 3
|
|
| >KOG2680|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.5e-05 Score=83.77 Aligned_cols=82 Identities=26% Similarity=0.407 Sum_probs=56.1
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCcccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVGY 857 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~Gy 857 (1165)
.+-.+||-.|.++.-..+..- +-|- ...+.+|+.|+||+|||.+|-.+|+.+| .||..+.+|++.+-
T Consensus 39 s~GmVGQ~~AR~Aagvi~kmi--~egk-------iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~Sl-- 107 (454)
T KOG2680|consen 39 SEGMVGQVKARKAAGVILKMI--REGK-------IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSL-- 107 (454)
T ss_pred cccchhhHHHHHHhHHHHHHH--HcCc-------ccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeee--
Confidence 467889988876654443321 2111 1137899999999999999999999996 79999999998653
Q ss_pred cccChhhHHHHHHHHH
Q psy2392 858 VGRDVDTIIRDLIDIS 873 (1165)
Q Consensus 858 vG~~~~~~l~~lf~~a 873 (1165)
.-+....++..|+.+
T Consensus 108 -EmsKTEAltQAfRks 122 (454)
T KOG2680|consen 108 -EMSKTEALTQAFRKS 122 (454)
T ss_pred -cccHHHHHHHHHHHh
Confidence 111123456666554
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=92.02 Aligned_cols=93 Identities=13% Similarity=0.231 Sum_probs=66.5
Q ss_pred eeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee
Q psy2392 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 1061 (1165)
Q Consensus 982 ~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~ 1061 (1165)
+.|+|++.|.+...... .. ......|++||++|++... .|+.||+++|...
T Consensus 91 ~~I~id~iR~l~~~~~~-----------~p--~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~--- 141 (325)
T PRK08699 91 LQIKIDAVREIIDNVYL-----------TS--VRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP--- 141 (325)
T ss_pred CCcCHHHHHHHHHHHhh-----------Cc--ccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCc---
Confidence 35778888876533221 00 0013569999999999876 7889999999631
Q ss_pred eeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1062 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1062 k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
.+..||.+. .+|+.+.|.+.+||-+ +.|.+++.++..+.|.+
T Consensus 142 -------~~~~~Ilvt----h~~~~ll~ti~SRc~~-~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 142 -------PQVVFLLVS----HAADKVLPTIKSRCRK-MVLPAPSHEEALAYLRE 183 (325)
T ss_pred -------CCCEEEEEe----CChHhChHHHHHHhhh-hcCCCCCHHHHHHHHHh
Confidence 234455543 4788899999999987 58999999999988864
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.9e-06 Score=100.47 Aligned_cols=112 Identities=16% Similarity=0.238 Sum_probs=75.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeecc--CceEEEEecCCCCCCCC----CCCch
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIK--TDHILFIASGAFHLAKP----SDLIP 1089 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~--t~~ilfI~~gaf~~~~p----~dl~p 1089 (1165)
++||+|+||+-.+... +|..||..+|.+.|+. +-|.-. -.+.++|++ .+| ..|-+
T Consensus 93 h~GvL~lDe~n~~~~~-------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat-----~~~~~~~~~L~~ 154 (584)
T PRK13406 93 DGGVLVLAMAERLEPG-------------TAARLAAALDTGEVRLERDGLALRLPARFGLVAL-----DEGAEEDERAPA 154 (584)
T ss_pred cCCEEEecCcccCCHH-------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec-----CCChhcccCCCH
Confidence 7899999999888776 8999999998776655 222111 123445553 222 23667
Q ss_pred hhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1090 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1090 el~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
.|+-||.+.|.+..++..+...-...+. -+...++.+. ++.++++.+++|+.+|...
T Consensus 155 ~lLDRf~l~v~v~~~~~~~~~~~~~~~~--~I~~AR~rl~----~v~v~~~~l~~i~~~~~~~ 211 (584)
T PRK13406 155 ALADRLAFHLDLDGLALRDAREIPIDAD--DIAAARARLP----AVGPPPEAIAALCAAAAAL 211 (584)
T ss_pred HhHhheEEEEEcCCCChHHhcccCCCHH--HHHHHHHHHc----cCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999887753211111 2222333342 4578999999999988865
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.00 E-value=5e-05 Score=94.30 Aligned_cols=122 Identities=18% Similarity=0.256 Sum_probs=75.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee-ceeecCc--eEEEEEeCC-----cccCCC----
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-YGIIKTD--HILFIASGA-----FHLAKP---- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~-~~~~~t~--~ilfI~~ga-----f~~~~p---- 486 (1165)
.+||+.|||+||+... .+..|...||..+++.. -|...|- .+-++||.+ |...+|
T Consensus 383 D~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~en 449 (682)
T COG1241 383 DGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAEN 449 (682)
T ss_pred cCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHh
Confidence 5899999999999755 34478889998888764 4422222 233455532 333332
Q ss_pred CCCchhhhCCCCeeEec-CCCCHHHHHHHHh----hh--------------------hHhHHHHHHHHHhhcCCeeEeCH
Q psy2392 487 SDLIPELQGRFPIRVEL-DSLSISDFTRIMT----ST--------------------NVCLTKQYEALLATEGIKIEFVD 541 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v~~-~~L~~~~l~~Il~----~~--------------------~~~l~~~~~~ll~~~~i~l~~~~ 541 (1165)
-+|.|.|++|||+++.+ +.++++.-..|.+ .- ...+++.|.... ...+...+++
T Consensus 450 I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YA-R~~v~P~lt~ 528 (682)
T COG1241 450 INLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYA-RKNVTPVLTE 528 (682)
T ss_pred cCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHH-hccCCcccCH
Confidence 24889999999976554 4444443333332 11 022344444433 3346678999
Q ss_pred HHHHHHHHHHHhc
Q psy2392 542 DGIQRLAEIAYCI 554 (1165)
Q Consensus 542 ~a~~~la~~a~~~ 554 (1165)
+|.+.|.+.-.+.
T Consensus 529 ea~e~l~~~Yv~~ 541 (682)
T COG1241 529 EAREELEDYYVEM 541 (682)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999877654
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.6e-05 Score=93.63 Aligned_cols=116 Identities=20% Similarity=0.277 Sum_probs=73.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeecc--CceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK--TDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~--t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++||||||.+... +|..|+..++...+.. .|.-. .-++-+|++..-.. ..+..|.+.|
T Consensus 233 ~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~-~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l 298 (441)
T PRK10365 233 DGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQR-VGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDL 298 (441)
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEe-CCCCceeeeceEEEEeCCCCHHHHHHcCCchHHH
Confidence 6899999999999886 8999999998765432 22111 12345666643211 1234566777
Q ss_pred hccCC-eEEEcCCCCHH--HHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSIS--DFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~~--~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
.-|+. +.+.++||-+. |+..+.. ..+.++..-.... ...|+++|++.|.......
T Consensus 299 ~~~l~~~~i~~ppLreR~~Di~~l~~----~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpg 356 (441)
T PRK10365 299 YYRLNVVAIEVPSLRQRREDIPLLAG----HFLQRFAERNRKA--VKGFTPQAMDLLIHYDWPG 356 (441)
T ss_pred HHHhccceecCCChhhcchhHHHHHH----HHHHHHHHHhCCC--CCCcCHHHHHHHHhCCCCC
Confidence 77764 66788898753 7766666 4555544322221 1358999999998766544
|
|
| >KOG1514|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.9e-05 Score=90.83 Aligned_cols=119 Identities=20% Similarity=0.368 Sum_probs=78.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCc-hhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~-pel~~R~ 497 (1165)
...||+|||.|-+++..|+ |.+.|+.+ .....+..++|+-++ ++.-|..+. +-.-+|+
T Consensus 508 ~~~VvLiDElD~Lvtr~Qd----------VlYn~fdW----------pt~~~sKLvvi~IaN-TmdlPEr~l~nrvsSRl 566 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQD----------VLYNIFDW----------PTLKNSKLVVIAIAN-TMDLPERLLMNRVSSRL 566 (767)
T ss_pred CCEEEEeccHHHHhcccHH----------HHHHHhcC----------CcCCCCceEEEEecc-cccCHHHHhccchhhhc
Confidence 5789999999999998665 43333321 112233445555432 222232211 1223565
Q ss_pred C-eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 498 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~-~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
. -++.|.|++..+|.+|+. .+| .|+ -.|..+|++.+|+.-+.+ .++||+...+++++.|-
T Consensus 567 g~tRi~F~pYth~qLq~Ii~----------~RL---~~~-~~f~~~aielvarkVAav-----SGDaRraldic~RA~Ei 627 (767)
T KOG1514|consen 567 GLTRICFQPYTHEQLQEIIS----------ARL---KGL-DAFENKAIELVARKVAAV-----SGDARRALDICRRAAEI 627 (767)
T ss_pred cceeeecCCCCHHHHHHHHH----------Hhh---cch-hhcchhHHHHHHHHHHhc-----cccHHHHHHHHHHHHHH
Confidence 5 468999999999999994 111 233 367899999999988775 68899999999999864
Q ss_pred h
Q psy2392 577 V 577 (1165)
Q Consensus 577 ~ 577 (1165)
.
T Consensus 628 a 628 (767)
T KOG1514|consen 628 A 628 (767)
T ss_pred h
Confidence 3
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.5e-05 Score=79.57 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=30.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC--CCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~ 253 (1165)
..++++||.|||||++++.+++.+. ...+.+++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~ 39 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDD 39 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCC
Confidence 5789999999999999999998885 6777777765
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.1e-06 Score=84.76 Aligned_cols=66 Identities=27% Similarity=0.532 Sum_probs=40.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCC---CCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLA---KPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~---~p~dl~pel~g 1093 (1165)
.+|.+||++||.+... .|..|+..++... ..++-+|++...... ....|.++|..
T Consensus 69 ~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~---------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~ 126 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE---------RSNVRLIASSSQDLEELVEEGRFSPDLYY 126 (138)
T ss_dssp TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT---------TTTSEEEEEECC-CCCHHHHSTHHHHHHH
T ss_pred CCCEEEECChHHCCHH-------------HHHHHHHHHHhcC---------CCCeEEEEEeCCCHHHHhhccchhHHHHH
Confidence 6799999999999887 8899998887421 122334444332221 12357788888
Q ss_pred cCC-eEEEcCCC
Q psy2392 1094 RFP-IRVELDSL 1104 (1165)
Q Consensus 1094 R~~-i~v~l~~l 1104 (1165)
||. +.+.++||
T Consensus 127 ~l~~~~i~lPpL 138 (138)
T PF14532_consen 127 RLSQLEIHLPPL 138 (138)
T ss_dssp HCSTCEEEE---
T ss_pred HhCCCEEeCCCC
Confidence 876 66677665
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=97.93 E-value=8.3e-06 Score=82.52 Aligned_cols=56 Identities=30% Similarity=0.534 Sum_probs=37.5
Q ss_pred ecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC---CCceEEeccc
Q psy2392 186 IGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATK 253 (1165)
Q Consensus 186 iGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~---~~~i~ld~s~ 253 (1165)
+|...+.+.+...+... . .....++++|+|||||+++|+.|....+ .+|+.+++..
T Consensus 1 vG~S~~~~~l~~~l~~~----a--------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~ 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL----A--------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS 59 (138)
T ss_dssp --SCHHHHHHHHHHHHH----H--------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC
T ss_pred CCCCHHHHHHHHHHHHH----h--------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh
Confidence 47777777777766542 0 0136899999999999999999998774 3555555543
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.7e-06 Score=96.75 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=73.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecC---ceEEEEEeCCcc-----cCCC----
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT---DHILFIASGAFH-----LAKP---- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t---~~ilfI~~gaf~-----~~~p---- 486 (1165)
..||++|||+||+... .+..|+..||.++++..-+.+.+ .+.-++|+.+-. ..++
T Consensus 121 d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~n 187 (331)
T PF00493_consen 121 DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSEN 187 (331)
T ss_dssp TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCC
T ss_pred cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHh
Confidence 6899999999999764 34488999998887764322211 133456663322 1111
Q ss_pred CCCchhhhCCCCeeEec-CCCCHHHHHHH----Hhhh------------------hHhHHHHHHHHHhhcCCeeEeCHHH
Q psy2392 487 SDLIPELQGRFPIRVEL-DSLSISDFTRI----MTST------------------NVCLTKQYEALLATEGIKIEFVDDG 543 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v~~-~~L~~~~l~~I----l~~~------------------~~~l~~~~~~ll~~~~i~l~~~~~a 543 (1165)
-.+.+.|++|||+++.+ ++.+.+.=..| +... ...+++.|.... .+.+...++++|
T Consensus 188 i~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~ya-r~~~~P~ls~ea 266 (331)
T PF00493_consen 188 INLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYA-RQNIHPVLSEEA 266 (331)
T ss_dssp T-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHH-HHHC--EE-HHC
T ss_pred cccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHH-HhhcccccCHHH
Confidence 14778999999987665 55553332222 2211 112233444433 235677999999
Q ss_pred HHHHHHHHHhccccC------CccCcchhHHHHHH
Q psy2392 544 IQRLAEIAYCINERT------ENIGARRLYTAMEK 572 (1165)
Q Consensus 544 ~~~la~~a~~~~~~~------~~~GAR~l~~~ie~ 572 (1165)
.+.|.+.....-... -.+.+|.|..++.-
T Consensus 267 ~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRL 301 (331)
T PF00493_consen 267 KELIINYYVELRKESKSNNKSIPITIRQLESLIRL 301 (331)
T ss_dssp HHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHH
T ss_pred HHHHHHHHHHhcccccccccccccchhhHHHHHHH
Confidence 998888665432211 23557777777643
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.7e-05 Score=77.29 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=52.4
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.....|+..|.+.+.||.-|++.+..++...+... .+ ..|-.+.|.||||||||++++.||+.+
T Consensus 14 ~~~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~---~p----~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 14 YNITGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP---NP----RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCHHHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC---CC----CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45678899999999999999999999998763221 11 224678899999999999999999996
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.6e-05 Score=85.63 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=58.5
Q ss_pred eeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee
Q psy2392 385 KIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK 464 (1165)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~ 464 (1165)
.+++.+++.+..+..-.-.. ..+.|++||++|+++.. .++.||+.+|-
T Consensus 74 ~I~idqiR~l~~~~~~~p~e-------------~~~kv~ii~~ad~mt~~-------------AaNaLLK~LEE------ 121 (290)
T PRK05917 74 LHSIETPRAIKKQIWIHPYE-------------SPYKIYIIHEADRMTLD-------------AISAFLKVLED------ 121 (290)
T ss_pred cCcHHHHHHHHHHHhhCccC-------------CCceEEEEechhhcCHH-------------HHHHHHHHhhc------
Confidence 35677776655443322111 25679999999999977 66799999996
Q ss_pred ceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCC
Q psy2392 465 YGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSL 506 (1165)
Q Consensus 465 ~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L 506 (1165)
...+++||..+ ++|+.+.|.++||+.. +.|.++
T Consensus 122 ----Pp~~~~fiL~~----~~~~~ll~TI~SRcq~-~~~~~~ 154 (290)
T PRK05917 122 ----PPQHGVIILTS----AKPQRLPPTIRSRSLS-IHIPME 154 (290)
T ss_pred ----CCCCeEEEEEe----CChhhCcHHHHhcceE-EEccch
Confidence 35566777653 5788999999999976 478875
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.7e-05 Score=84.74 Aligned_cols=90 Identities=13% Similarity=0.272 Sum_probs=63.9
Q ss_pred ceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee
Q psy2392 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT 463 (1165)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~ 463 (1165)
..|++.+.+.+.......-.. ..+.|++||++|+++.. .++.||+.+|.
T Consensus 82 ~~I~idqIR~l~~~~~~~p~~-------------~~~kV~II~~ad~m~~~-------------AaNaLLKtLEE----- 130 (290)
T PRK07276 82 QVIKTDTIRELVKNFSQSGYE-------------GKQQVFIIKDADKMHVN-------------AANSLLKVIEE----- 130 (290)
T ss_pred CcCCHHHHHHHHHHHhhCccc-------------CCcEEEEeehhhhcCHH-------------HHHHHHHHhcC-----
Confidence 346667776655443321111 25679999999999876 56699999996
Q ss_pred eceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHH
Q psy2392 464 KYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIM 515 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il 515 (1165)
...+.+||... ++|+.+.|.++||+-+ |.|.+ +.+++.++|
T Consensus 131 -----Pp~~t~~iL~t----~~~~~lLpTI~SRcq~-i~f~~-~~~~~~~~L 171 (290)
T PRK07276 131 -----PQSEIYIFLLT----NDENKVLPTIKSRTQI-FHFPK-NEAYLIQLL 171 (290)
T ss_pred -----CCCCeEEEEEE----CChhhCchHHHHccee-eeCCC-cHHHHHHHH
Confidence 34556666652 5789999999999976 58876 777777766
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00028 Score=76.67 Aligned_cols=61 Identities=18% Similarity=0.397 Sum_probs=46.2
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
.++|-+..++.+.+..... -.|+ | ..|+||||.-|+|||+|+|++-.++ +..++.++..++
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F--~~G~-----p---ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl 124 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQF--AEGL-----P---ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDL 124 (287)
T ss_pred HHhCchHHHHHHHHHHHHH--HcCC-----c---ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHH
Confidence 7789999998888766543 1121 1 2699999999999999999999888 455666666554
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.5e-05 Score=91.56 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=92.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ecee--ecCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~--~~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
.+||+||||+-.+.+. +|..||..||.+.|+. +.|. ..-.+.++|++-. ....-..+.+.|+-
T Consensus 93 h~GvL~lDe~n~~~~~-------------~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~-~~~~~~~L~~~lLD 158 (584)
T PRK13406 93 DGGVLVLAMAERLEPG-------------TAARLAAALDTGEVRLERDGLALRLPARFGLVALDE-GAEEDERAPAALAD 158 (584)
T ss_pred cCCEEEecCcccCCHH-------------HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC-ChhcccCCCHHhHh
Confidence 5899999999988766 7779999998776655 2221 1123445566410 00011237788999
Q ss_pred CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCcc-CcchhHHHHHHHH
Q psy2392 496 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI-GARRLYTAMEKLL 574 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~-GAR~l~~~ie~~l 574 (1165)
||.+.|.+..++..+...-...+ . -+...++.+ . ++.++++.++++++.+..+ ++ |.|....++.-.-
T Consensus 159 Rf~l~v~v~~~~~~~~~~~~~~~-~-~I~~AR~rl--~--~v~v~~~~l~~i~~~~~~~-----gv~S~Ra~i~llraAR 227 (584)
T PRK13406 159 RLAFHLDLDGLALRDAREIPIDA-D-DIAAARARL--P--AVGPPPEAIAALCAAAAAL-----GIASLRAPLLALRAAR 227 (584)
T ss_pred heEEEEEcCCCChHHhcccCCCH-H-HHHHHHHHH--c--cCCCCHHHHHHHHHHHHHh-----CCCCcCHHHHHHHHHH
Confidence 99999999999988765321111 1 122223333 2 4578999999999988764 44 6687777665432
Q ss_pred HHhhcccCCCeeEEccccccccc
Q psy2392 575 EEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
.-... .+. -.|+.+.|++.+
T Consensus 228 a~AaL--~Gr-~~V~~~dv~~Aa 247 (584)
T PRK13406 228 AAAAL--AGR-TAVEEEDLALAA 247 (584)
T ss_pred HHHHH--cCC-CCCCHHHHHHHH
Confidence 22211 122 245666665544
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00018 Score=77.71 Aligned_cols=103 Identities=21% Similarity=0.383 Sum_probs=52.6
Q ss_pred CCeeeehhhhhhh-ccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCC--CCCCCCchhhhcc
Q psy2392 1018 NGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL--AKPSDLIPELQGR 1094 (1165)
Q Consensus 1018 ~gIvfiDEiDki~-~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~--~~p~dl~pel~gR 1094 (1165)
..||+|||+|.+. ...+ ....-..|..+++. .....|+.+|.+|+... ..-.+-.+++.+|
T Consensus 119 ~~iiviDe~~~~~~~~~~--------~~~~~~~l~~~~~~--------~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~ 182 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEE--------DKDFLKSLRSLLDS--------LLSQQNVSIVITGSSDSLMEEFLDDKSPLFGR 182 (234)
T ss_dssp CEEEEEETGGGGGBCTTT--------THHHHHHHHHHHHH------------TTEEEEEEESSHHHHHHTT-TTSTTTT-
T ss_pred cEEEEEecHHHHhhcccc--------hHHHHHHHHHHHhh--------ccccCCceEEEECCchHHHHHhhcccCccccc
Confidence 3799999999999 2211 12234455555542 22345666666665321 0111233568899
Q ss_pred CCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1095 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.. +.+++|+.++..+.+++ .+... +++.++++.++.|....
T Consensus 183 ~~~-~~l~~l~~~e~~~~~~~-----------~~~~~-~~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 183 FSH-IELKPLSKEEAREFLKE-----------LFKEL-IKLPFSDEDIEEIYSLT 224 (234)
T ss_dssp --E-EEE----HHHHHHHHHH-----------HHHCC-------HHHHHHHHHHH
T ss_pred cce-EEEeeCCHHHHHHHHHH-----------HHHHh-hcccCCHHHHHHHHHHh
Confidence 998 89999999999999982 23322 33356899998887643
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=78.33 Aligned_cols=103 Identities=21% Similarity=0.368 Sum_probs=50.7
Q ss_pred ceEEEEecchhhh-ccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCccc-C-CCCCCchhhhCC
Q psy2392 420 NGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-A-KPSDLIPELQGR 496 (1165)
Q Consensus 420 ~~IifiDEidki~-~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~-~-~p~~l~pel~~R 496 (1165)
..||+|||++.+. .... .......|..+++.. ....|+.+|.+|+... . .-..-.+.+.+|
T Consensus 119 ~~iiviDe~~~~~~~~~~--------~~~~~~~l~~~~~~~--------~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~ 182 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASEE--------DKDFLKSLRSLLDSL--------LSQQNVSIVITGSSDSLMEEFLDDKSPLFGR 182 (234)
T ss_dssp CEEEEEETGGGGGBCTTT--------THHHHHHHHHHHHH------------TTEEEEEEESSHHHHHHTT-TTSTTTT-
T ss_pred cEEEEEecHHHHhhcccc--------hHHHHHHHHHHHhhc--------cccCCceEEEECCchHHHHHhhcccCccccc
Confidence 4799999999998 2211 122333455555431 1234555555543211 0 111233557899
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 551 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a 551 (1165)
+.. +.+++++.++..+++.+ .+... +++.++++.++.+....
T Consensus 183 ~~~-~~l~~l~~~e~~~~~~~-----------~~~~~-~~~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 183 FSH-IELKPLSKEEAREFLKE-----------LFKEL-IKLPFSDEDIEEIYSLT 224 (234)
T ss_dssp --E-EEE----HHHHHHHHHH-----------HHHCC-------HHHHHHHHHHH
T ss_pred cce-EEEeeCCHHHHHHHHHH-----------HHHHh-hcccCCHHHHHHHHHHh
Confidence 998 89999999999998852 12222 33356888888887765
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.5e-05 Score=76.17 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=29.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se 851 (1165)
+.++++||.||||||+++.+++.+. .+++.+++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~ 39 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDD 39 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCC
Confidence 5689999999999999999998875 6666666654
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00034 Score=80.10 Aligned_cols=70 Identities=14% Similarity=0.312 Sum_probs=56.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. .++.||..+|. ..++++||... ++|+.+.|.+++|+.
T Consensus 90 ~~KvvII~~~e~m~~~-------------a~NaLLK~LEE----------Pp~~t~~il~~----~~~~kll~TI~SRc~ 142 (299)
T PRK07132 90 QKKILIIKNIEKTSNS-------------LLNALLKTIEE----------PPKDTYFLLTT----KNINKVLPTIVSRCQ 142 (299)
T ss_pred CceEEEEecccccCHH-------------HHHHHHHHhhC----------CCCCeEEEEEe----CChHhChHHHHhCeE
Confidence 5779999999998755 56699999996 34556666542 367889999999998
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
+ |+|.+++.+++.+.|.
T Consensus 143 ~-~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 143 V-FNVKEPDQQKILAKLL 159 (299)
T ss_pred E-EECCCCCHHHHHHHHH
Confidence 7 6999999999988774
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=97.71 E-value=2.5e-05 Score=90.66 Aligned_cols=117 Identities=24% Similarity=0.344 Sum_probs=64.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeee---ccCceEEEEec-----CCCCCCCC---
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI---IKTDHILFIAS-----GAFHLAKP--- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~---~~t~~ilfI~~-----gaf~~~~p--- 1084 (1165)
..||++|||+||+... .+..|+..||..+++. |-|. +.+. ..++|+ |.|...++
T Consensus 121 d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar-~svlaa~NP~~g~~~~~~~~~~ 186 (331)
T PF00493_consen 121 DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNAR-CSVLAAANPKFGRYDPNKSLSE 186 (331)
T ss_dssp TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE----EEEEEE--TT--S-TTS-CGC
T ss_pred cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccch-hhhHHHHhhhhhhcchhhhhHH
Confidence 6799999999999775 6678999999988865 3332 2222 345555 33322222
Q ss_pred -CCCchhhhccCCeEEEc-CCCCHHHHHHHHh----h------------------hHHHhHHHHHHHHhhcCCceEeCHH
Q psy2392 1085 -SDLIPELQGRFPIRVEL-DSLSISDFTRIMT----S------------------TNVCLTKQYEALLATEGIKIEFVDD 1140 (1165)
Q Consensus 1085 -~dl~pel~gR~~i~v~l-~~l~~~~l~~il~----~------------------~~~~l~~q~~~l~~~egv~l~~~~~ 1140 (1165)
-++-+.|++||++.+.+ ++.+++.=.+|.+ . ....+++.|-...+ +.+...|+++
T Consensus 187 ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar-~~~~P~ls~e 265 (331)
T PF00493_consen 187 NINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYAR-QNIHPVLSEE 265 (331)
T ss_dssp CT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHH-HHC--EE-HH
T ss_pred hcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHH-hhcccccCHH
Confidence 24778999999988765 5555332222222 1 12334566666655 3566799999
Q ss_pred HHHHHHHH
Q psy2392 1141 GIQRLAEI 1148 (1165)
Q Consensus 1141 ai~~ia~~ 1148 (1165)
|.+.|.+.
T Consensus 266 a~~~I~~~ 273 (331)
T PF00493_consen 266 AKELIINY 273 (331)
T ss_dssp CHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888663
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00035 Score=79.99 Aligned_cols=71 Identities=15% Similarity=0.311 Sum_probs=57.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+||++|++... .|+.||+.+|...- +.+||... ++|+.+.|.+.+||-
T Consensus 90 ~~KvvII~~~e~m~~~-------------a~NaLLK~LEEPp~----------~t~~il~~----~~~~kll~TI~SRc~ 142 (299)
T PRK07132 90 QKKILIIKNIEKTSNS-------------LLNALLKTIEEPPK----------DTYFLLTT----KNINKVLPTIVSRCQ 142 (299)
T ss_pred CceEEEEecccccCHH-------------HHHHHHHHhhCCCC----------CeEEEEEe----CChHhChHHHHhCeE
Confidence 3569999999999765 77899999997433 33555432 367899999999998
Q ss_pred eEEEcCCCCHHHHHHHHhh
Q psy2392 1097 IRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~ 1115 (1165)
+ |+|.+++.+++.+.|.+
T Consensus 143 ~-~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 V-FNVKEPDQQKILAKLLS 160 (299)
T ss_pred E-EECCCCCHHHHHHHHHH
Confidence 7 69999999999988884
|
|
| >KOG2170|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=74.27 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=52.2
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+...|+..|.+.+.||.-|++.+..++..+|.-. .+..|-.+-|.|+|||||.+.++.||+.+
T Consensus 71 ~~~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-------~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 71 NDLDGLEKDLARALFGQHLAKQLVVNALKSHWANP-------NPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC-------CCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 33567889999999999999999999998764221 11235678899999999999999999988
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00027 Score=80.31 Aligned_cols=68 Identities=13% Similarity=0.343 Sum_probs=54.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .++.||+.+|... .|.+||... ++|+.+.|.+.+||-+
T Consensus 105 ~kV~II~~ad~m~~~-------------AaNaLLKtLEEPp----------~~t~~iL~t----~~~~~lLpTI~SRcq~ 157 (290)
T PRK07276 105 QQVFIIKDADKMHVN-------------AANSLLKVIEEPQ----------SEIYIFLLT----NDENKVLPTIKSRTQI 157 (290)
T ss_pred cEEEEeehhhhcCHH-------------HHHHHHHHhcCCC----------CCeEEEEEE----CChhhCchHHHHccee
Confidence 459999999999876 6789999999743 333454443 4789999999999986
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
+.|.+ ..+++.++|.
T Consensus 158 -i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 158 -FHFPK-NEAYLIQLLE 172 (290)
T ss_pred -eeCCC-cHHHHHHHHH
Confidence 58977 7888888886
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0012 Score=74.74 Aligned_cols=58 Identities=29% Similarity=0.291 Sum_probs=40.1
Q ss_pred HHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 177 IVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 177 l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+...-...-||-..|.+.+...-..- ..+.+ ....++|++|+||.|||++++..++..
T Consensus 28 I~~i~~~rWIgY~~A~~~L~~L~~Ll------~~P~~--~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 28 IAYIRADRWIGYPRAKEALDRLEELL------EYPKR--HRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred HHHHhcCCeecCHHHHHHHHHHHHHH------hCCcc--cCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 33344568899999987766543211 11111 123689999999999999999999876
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00093 Score=86.50 Aligned_cols=38 Identities=32% Similarity=0.524 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 256 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~ 256 (1165)
..+|+-||+.+|||+...-+|+..|..|++++-.+.++
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTd 926 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTD 926 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccch
Confidence 57899999999999999999999999999999888654
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00038 Score=78.99 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=47.3
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|+++.. .|+.||+++|... .+.+||... ++|+.+.|.+++||-+
T Consensus 96 ~kv~ii~~ad~mt~~-------------AaNaLLK~LEEPp----------~~~~fiL~~----~~~~~ll~TI~SRcq~ 148 (290)
T PRK05917 96 YKIYIIHEADRMTLD-------------AISAFLKVLEDPP----------QHGVIILTS----AKPQRLPPTIRSRSLS 148 (290)
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhhcCC----------CCeEEEEEe----CChhhCcHHHHhcceE
Confidence 359999999999987 7889999999743 344555443 4788999999999886
Q ss_pred EEEcCCCC
Q psy2392 1098 RVELDSLS 1105 (1165)
Q Consensus 1098 ~v~l~~l~ 1105 (1165)
+.|.++.
T Consensus 149 -~~~~~~~ 155 (290)
T PRK05917 149 -IHIPMEE 155 (290)
T ss_pred -EEccchh
Confidence 5788653
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00037 Score=85.34 Aligned_cols=123 Identities=13% Similarity=0.197 Sum_probs=67.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeC--CcccCCC-C--------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASG--AFHLAKP-S-------- 487 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~g--af~~~~p-~-------- 487 (1165)
...||+|+|+-.+... +. ...+..|+..+..+.. ..++||.+- .....+. .
T Consensus 132 ~~kvILVEDlPN~~~~-------~~--~~f~~~L~~~l~~~~~---------~PlV~iiSe~~~~~~~~~~~~~~~t~~~ 193 (519)
T PF03215_consen 132 NKKVILVEDLPNVFHR-------DT--SRFREALRQYLRSSRC---------LPLVFIISETESLSGDNSYRSNSFTAER 193 (519)
T ss_pred CceEEEeeccccccch-------hH--HHHHHHHHHHHHcCCC---------CCEEEEEecccccCCCCcccccchhhhh
Confidence 4679999998754322 11 3456666666653211 156677772 2221111 1
Q ss_pred CCchhhhCCCC-eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCC-eeEeCHHHHHHHHHHHHhccccCCccCcch
Q psy2392 488 DLIPELQGRFP-IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGI-KIEFVDDGIQRLAEIAYCINERTENIGARR 565 (1165)
Q Consensus 488 ~l~pel~~R~~-~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i-~l~~~~~a~~~la~~a~~~~~~~~~~GAR~ 565 (1165)
-|.|+++.... -+|.|+|....-+.+.|+ .+..+....+ .|. ...-..+.++.|++.+ +++-|.
T Consensus 194 L~~~~il~~~~i~~I~FNpIa~T~mkKaL~----rI~~~E~~~~--~~~~~~p~~~~~l~~I~~~s--------~GDIRs 259 (519)
T PF03215_consen 194 LFPKEILNHPGITRIKFNPIAPTFMKKALK----RILKKEARSS--SGKNKVPDKQSVLDSIAESS--------NGDIRS 259 (519)
T ss_pred ccCHHHHhCCCceEEEecCCCHHHHHHHHH----HHHHHHhhhh--cCCccCCChHHHHHHHHHhc--------CchHHH
Confidence 25678875322 347999999998888884 3333221111 122 1121244588887765 566676
Q ss_pred hHHHHHHH
Q psy2392 566 LYTAMEKL 573 (1165)
Q Consensus 566 l~~~ie~~ 573 (1165)
.-+.++-.
T Consensus 260 AIn~LQf~ 267 (519)
T PF03215_consen 260 AINNLQFW 267 (519)
T ss_pred HHHHHHHH
Confidence 66666544
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00048 Score=81.26 Aligned_cols=95 Identities=18% Similarity=0.347 Sum_probs=61.8
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC---CchhhhccC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD---LIPELQGRF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d---l~pel~gR~ 1095 (1165)
-+++||.|+.++... +.|..+.-++-- ......-+.++| . .-|.. +.|-|.+||
T Consensus 177 dlllIDDiq~l~gk~-----------~~qeefFh~FN~--------l~~~~kqIvlts-d---r~P~~l~~~~~rL~SR~ 233 (408)
T COG0593 177 DLLLIDDIQFLAGKE-----------RTQEEFFHTFNA--------LLENGKQIVLTS-D---RPPKELNGLEDRLRSRL 233 (408)
T ss_pred CeeeechHhHhcCCh-----------hHHHHHHHHHHH--------HHhcCCEEEEEc-C---CCchhhccccHHHHHHH
Confidence 489999999998762 246655544321 011111112222 1 13443 558999996
Q ss_pred C--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 P--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
. +.+++.|++.+....||. ...+..|+ .++++++.+||..-
T Consensus 234 ~~Gl~~~I~~Pd~e~r~aiL~-----------kka~~~~~--~i~~ev~~~la~~~ 276 (408)
T COG0593 234 EWGLVVEIEPPDDETRLAILR-----------KKAEDRGI--EIPDEVLEFLAKRL 276 (408)
T ss_pred hceeEEeeCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHh
Confidence 4 788999999999999999 23444555 78899999998753
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00025 Score=88.28 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=77.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeeccCce--EEEEec-----CCCCCCCC----
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDH--ILFIAS-----GAFHLAKP---- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~t~~--ilfI~~-----gaf~~~~p---- 1084 (1165)
.+||..|||+||+... .+..|...||..+|+. |-|...|=| ..++|| |-|...+|
T Consensus 383 D~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~en 449 (682)
T COG1241 383 DGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAEN 449 (682)
T ss_pred cCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHh
Confidence 6899999999999765 6678999999988876 555333332 223333 44554444
Q ss_pred CCCchhhhccCCeEEEcC-CCCHHHHHHHHhh----h--------------------HHHhHHHHHHHHhhcCCceEeCH
Q psy2392 1085 SDLIPELQGRFPIRVELD-SLSISDFTRIMTS----T--------------------NVCLTKQYEALLATEGIKIEFVD 1139 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v~l~-~l~~~~l~~il~~----~--------------------~~~l~~q~~~l~~~egv~l~~~~ 1139 (1165)
-+|-|.|++||.+.+-+. .++++.-..|.+. - ...+++.|-...++. +...+++
T Consensus 450 I~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~-v~P~lt~ 528 (682)
T COG1241 450 INLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKN-VTPVLTE 528 (682)
T ss_pred cCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhcc-CCcccCH
Confidence 368899999999776554 3444333333221 1 123466666665553 6678999
Q ss_pred HHHHHHHHH
Q psy2392 1140 DGIQRLAEI 1148 (1165)
Q Consensus 1140 ~ai~~ia~~ 1148 (1165)
+|.+.|.+.
T Consensus 529 ea~e~l~~~ 537 (682)
T COG1241 529 EAREELEDY 537 (682)
T ss_pred HHHHHHHHH
Confidence 999988764
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00015 Score=80.92 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+++|+||||||||+||.++|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999998
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0005 Score=76.63 Aligned_cols=65 Identities=15% Similarity=0.140 Sum_probs=51.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|++||++|+++.. ..+.||..+|. ...+.+||..+ .+|..+.|.++||+.
T Consensus 88 ~~KV~II~~ae~m~~~-------------AaNaLLK~LEE----------Pp~~t~fiLit----~~~~~lLpTI~SRCq 140 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQ-------------SANSLLKLIEE----------PPKNTYGIFTT----RNENNILNTILSRCV 140 (261)
T ss_pred CCEEEEeccHhhhCHH-------------HHHHHHHhhcC----------CCCCeEEEEEE----CChHhCchHhhhhee
Confidence 4789999999999977 55699999996 35566777663 578999999999987
Q ss_pred eeEecCCCCHHHH
Q psy2392 499 IRVELDSLSISDF 511 (1165)
Q Consensus 499 ~~v~~~~L~~~~l 511 (1165)
. +.|.++.+...
T Consensus 141 ~-~~~~~~~~~~~ 152 (261)
T PRK05818 141 Q-YVVLSKEKKVP 152 (261)
T ss_pred e-eecCChhhhcc
Confidence 6 46877744443
|
|
| >KOG0480|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0017 Score=78.51 Aligned_cols=69 Identities=17% Similarity=0.319 Sum_probs=48.8
Q ss_pred HHHHHHHhcccEecchhhHHHHHHHHHhhhhh-hcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 174 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRR-QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 174 ~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r-~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
...|..-|--.|.|.+.+|.-|.-.+.....+ .+=.-++|.. -|++++|-||+|||-+-++.+..+...
T Consensus 336 y~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGD---inv~iVGDPgt~KSQfLk~v~~fsPR~ 405 (764)
T KOG0480|consen 336 YKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGD---INVCIVGDPGTGKSQFLKAVCAFSPRS 405 (764)
T ss_pred HHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCC---ceEEEeCCCCccHHHHHHHHhccCCcc
Confidence 34556666778999999998888777644222 1211122222 599999999999999999999888543
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00015 Score=87.89 Aligned_cols=62 Identities=24% Similarity=0.422 Sum_probs=49.1
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh-CCCceEEeccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATK 253 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i~ld~s~ 253 (1165)
+++|+++++..|...+... ..++.. +...++|+||||+|||+||++||+.+ ..|++.+...+
T Consensus 77 d~yGlee~ieriv~~l~~A--a~gl~~------~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~ 139 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHA--AQGLEE------KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANG 139 (644)
T ss_pred cccCcHHHHHHHHHHHHHH--HHhcCC------CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCC
Confidence 6899999999999988655 333432 23689999999999999999999999 46777776533
|
|
| >KOG2227|consensus | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.003 Score=74.43 Aligned_cols=97 Identities=23% Similarity=0.338 Sum_probs=64.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC----Cchhhhc
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD----LIPELQG 1093 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d----l~pel~g 1093 (1165)
+=++++||+|.+.+. -|+.|..+.| |-...+.+++.|+-. +.-| +.|-|..
T Consensus 257 ~~llVlDEmD~L~tr-------------~~~vLy~lFe-------wp~lp~sr~iLiGiA-----NslDlTdR~LprL~~ 311 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITR-------------SQTVLYTLFE-------WPKLPNSRIILIGIA-----NSLDLTDRFLPRLNL 311 (529)
T ss_pred eEEEEechhhHHhhc-------------ccceeeeehh-------cccCCcceeeeeeeh-----hhhhHHHHHhhhhhh
Confidence 348999999999976 3456777776 445566776665542 3334 5566665
Q ss_pred c---CCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1094 R---FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1094 R---~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
| -|-++.|+|+|.+++++||+ .-|.++-.. .|-+-|++.+|+....
T Consensus 312 ~~~~~P~~l~F~PYTk~qI~~Il~-----------~rl~~~~t~-~~~~~Aie~~ArKvaa 360 (529)
T KOG2227|consen 312 DLTIKPKLLVFPPYTKDQIVEILQ-----------QRLSEESTS-IFLNAAIELCARKVAA 360 (529)
T ss_pred ccCCCCceeeecCCCHHHHHHHHH-----------HHHhccccc-ccchHHHHHHHHHhcc
Confidence 4 46688999999999999999 233333332 3445677777765543
|
|
| >KOG0478|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00067 Score=82.54 Aligned_cols=122 Identities=25% Similarity=0.329 Sum_probs=72.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-eceeecCce--EEEEEeCCcc--cCCC-------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDH--ILFIASGAFH--LAKP------- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~~~t~~--ilfI~~gaf~--~~~p------- 486 (1165)
.+||-.|||+||+..+ -+.-|+..||..+++. |-|.+.+=| .-+||+.+-. .-+|
T Consensus 526 D~GiCCIDEFDKM~dS-------------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eN 592 (804)
T KOG0478|consen 526 DNGICCIDEFDKMSDS-------------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIEN 592 (804)
T ss_pred CCceEEchhhhhhhHH-------------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhc
Confidence 5799999999999755 3337899999888776 455444432 3455553311 1111
Q ss_pred CCCchhhhCCCCee-EecCCCCHH-HHH---HHHh---h---------hhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHH
Q psy2392 487 SDLIPELQGRFPIR-VELDSLSIS-DFT---RIMT---S---------TNVCLTKQYEALLATEGIKIEFVDDGIQRLAE 549 (1165)
Q Consensus 487 ~~l~pel~~R~~~~-v~~~~L~~~-~l~---~Il~---~---------~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~ 549 (1165)
-++.|.|++||+.+ +.|++.++- |+. .|+. + -..++++-|.. .+.+.+.-..+++|.+.+..
T Consensus 593 I~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~-yArk~i~p~l~~ea~~~l~~ 671 (804)
T KOG0478|consen 593 INLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIR-YARKNIHPALSPEASQALIQ 671 (804)
T ss_pred cCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHH-HHhccCCccccHHHHHHHHH
Confidence 13889999999954 455666554 211 1110 0 01223333333 23456677888999999888
Q ss_pred HHHhc
Q psy2392 550 IAYCI 554 (1165)
Q Consensus 550 ~a~~~ 554 (1165)
...+.
T Consensus 672 ayvd~ 676 (804)
T KOG0478|consen 672 AYVDM 676 (804)
T ss_pred Hhhhh
Confidence 76654
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00047 Score=68.22 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=27.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc--------CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS--------NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l--------~~~fi~l~~se 851 (1165)
.+.++++||||+|||++++.+++.+ ..+++.++++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS 47 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC
Confidence 3678999999999999999999988 56667666655
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00021 Score=79.62 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=23.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+++|+||||||||+||.++++.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999998
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0012 Score=74.76 Aligned_cols=53 Identities=28% Similarity=0.313 Sum_probs=36.6
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+.-+|...|.+.+...-... ...... ...++|++|+||.|||++++...+..
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll----~~P~~~----Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELL----EYPKRH----RMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHH----hCCccc----CCCceEEecCCCCcHHHHHHHHHHHC
Confidence 457788888877666443311 011111 24789999999999999999888765
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00027 Score=85.88 Aligned_cols=62 Identities=24% Similarity=0.430 Sum_probs=49.2
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc-CCCeEEEecC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEAT 850 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~~s 850 (1165)
++++|++++++.|...+... ..++... ...++|.||||+|||+||+.||+.+ ..|++.+.+.
T Consensus 76 ~d~yGlee~ieriv~~l~~A--a~gl~~~------~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~ 138 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHA--AQGLEEK------KQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKAN 138 (644)
T ss_pred hcccCcHHHHHHHHHHHHHH--HHhcCCC------CceEEEecCCCCCchHHHHHHHHHHHhCcceeecCC
Confidence 46889999999999988655 3333321 3579999999999999999999998 4677777663
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00012 Score=82.49 Aligned_cols=86 Identities=22% Similarity=0.189 Sum_probs=65.0
Q ss_pred cccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhh
Q psy2392 1051 LPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 1130 (1165)
Q Consensus 1051 L~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~ 1130 (1165)
||.+|.++++. .+.+|+|+.| .++|+|++|+-++ +|++|+.+|+.++|+ +++. ... .+.
T Consensus 1 Lp~vE~G~i~L--IGATTENP~f------------~vn~ALlSR~~v~-~l~~L~~~di~~il~---ral~-~~~-~~~- 59 (300)
T PRK14700 1 MPYVESGKIIL--IGATTENPTY------------YLNDALVSRLFIL-RLKRLSLVATQKLIE---KALS-QDE-VLA- 59 (300)
T ss_pred CCCccCCcEEE--EeecCCCccc------------eecHhhhhhhhee-eecCCCHHHHHHHHH---HHHH-hhh-ccC-
Confidence 68888877765 6777777777 8999999999885 899999999999999 3332 211 122
Q ss_pred cCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1131 EGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1131 egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
..++.++|+|++.||..|-..-|.+.|
T Consensus 60 -~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 60 -KHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred -CcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 235689999999999988765555544
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00057 Score=75.55 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=51.2
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHH------cCCCeEEEecC
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL------SNAPFIKIEAT 850 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~------l~~~fi~l~~s 850 (1165)
..|+.-|.-...+-..+.+.|..- -+.+ ...+||.||+|.||+.||+.+-+. +.-+|+.++|.
T Consensus 180 ~~lksgiatrnp~fnrmieqierv----a~rs-------r~p~ll~gptgagksflarriyelk~arhq~sg~fvevnca 248 (531)
T COG4650 180 DFLKSGIATRNPHFNRMIEQIERV----AIRS-------RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCA 248 (531)
T ss_pred HHHHhcccccChHHHHHHHHHHHH----Hhhc-------cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeee
Confidence 445555555555555555555421 1111 245999999999999999988754 36789999999
Q ss_pred CcccccccccChhhHHHHHHHHH
Q psy2392 851 KFTEVGYVGRDVDTIIRDLIDIS 873 (1165)
Q Consensus 851 e~~~~GyvG~~~~~~l~~lf~~a 873 (1165)
.+... +....+|+..
T Consensus 249 tlrgd--------~amsalfghv 263 (531)
T COG4650 249 TLRGD--------TAMSALFGHV 263 (531)
T ss_pred eecCc--------hHHHHHHhhh
Confidence 86432 3466777654
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0027 Score=69.27 Aligned_cols=59 Identities=19% Similarity=0.393 Sum_probs=44.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC---CCeEEEec
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEA 849 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~ 849 (1165)
.+++|-+..++.+...-... -.|+. ..++||||.-|+|||+++|++-++++ ..++.++-
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F--~~G~p--------ANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k 121 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQF--AEGLP--------ANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDK 121 (287)
T ss_pred HHHhCchHHHHHHHHHHHHH--HcCCc--------ccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcH
Confidence 57889999999988776543 12222 37999999999999999999999884 33444443
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00057 Score=67.60 Aligned_cols=36 Identities=28% Similarity=0.551 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh--------CCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS--------NAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l--------~~~~i~ld~s~ 253 (1165)
.+.++++||||+|||++++.+++.+ ..+++.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS 47 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC
Confidence 3789999999999999999999988 45566666654
|
|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00083 Score=71.75 Aligned_cols=89 Identities=21% Similarity=0.367 Sum_probs=68.4
Q ss_pred eeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee
Q psy2392 983 KIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK 1062 (1165)
Q Consensus 983 ~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k 1062 (1165)
.++|+++|+++..-.- ..+.+-++||++|++... .++.||+++|...
T Consensus 36 ~i~Vd~iReii~~~~~----------------~~~~~k~iI~~a~~l~~~-------------A~NaLLK~LEEPp---- 82 (206)
T PRK08485 36 EFKIEDAKEVIAEAYI----------------AESEEKIIVIAAPSYGIE-------------AQNALLKILEEPP---- 82 (206)
T ss_pred CCCHHHHHHHHHHHhh----------------CCCCcEEEEEchHhhCHH-------------HHHHHHHHhcCCC----
Confidence 5788888887754331 123455678999999887 7889999999744
Q ss_pred eeeccCceEEEEecCCCCCCCCCCCchhhhccCCe------------EEEcCCCCHHHHHHHHh
Q psy2392 1063 YGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI------------RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1063 ~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i------------~v~l~~l~~~~l~~il~ 1114 (1165)
.|++||... .+|..+.|.+++||.+ ...|++|+.++++..|+
T Consensus 83 ------~~~~fiL~t----~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~ 136 (206)
T PRK08485 83 ------KNICFIIVA----KSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLK 136 (206)
T ss_pred ------CCeEEEEEe----CChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHH
Confidence 445565553 4788999999999975 57899999999999887
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00036 Score=73.28 Aligned_cols=44 Identities=34% Similarity=0.594 Sum_probs=37.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~ 263 (1165)
..++++|||||||||+|+.|++.++.+++.+|.- +..+||...+
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l-~~~~~w~~~~ 45 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL-FWKPNWEGVP 45 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh-hcccCCcCCC
Confidence 3689999999999999999999999999999964 3356776554
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0004 Score=72.91 Aligned_cols=45 Identities=33% Similarity=0.568 Sum_probs=37.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccCh
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDV 862 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~ 862 (1165)
..++++||||+||||+|+.|++.++.+++.+|.- +..+||...+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l-~~~~~w~~~~~ 46 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL-FWKPNWEGVPK 46 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh-hcccCCcCCCH
Confidence 3589999999999999999999999999998863 44567776553
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00026 Score=69.35 Aligned_cols=31 Identities=35% Similarity=0.699 Sum_probs=27.4
Q ss_pred EEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
+++.|||||||||+|+.||+.++.+++.+|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999877666555
|
... |
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00035 Score=78.82 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+++|+||||||||.||.+++..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH
Confidence 689999999999999999999876
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00094 Score=74.36 Aligned_cols=35 Identities=17% Similarity=0.354 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
.+++|+||||||||+|+.++|..+ +..++.++.++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 589999999999999999999998 44445454433
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00023 Score=69.71 Aligned_cols=39 Identities=33% Similarity=0.678 Sum_probs=30.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 221 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 221 ~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
+++.|||||||||+|+.||+.++.+++.+|. -+..++|.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~-~~~~~~~~ 40 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD-LIREPGWI 40 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH-HHCCGTHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc-eEEecccc
Confidence 7899999999999999999999877665555 12444444
|
... |
| >KOG1514|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0053 Score=75.47 Aligned_cols=102 Identities=20% Similarity=0.419 Sum_probs=61.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc-hhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI-PELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~-pel~gR~ 1095 (1165)
...+|+|||.|-+++.++ .-|--+.+ |........++||-+. ++.=|..++ +-.-+|+
T Consensus 508 ~~~VvLiDElD~Lvtr~Q-------------dVlYn~fd-------Wpt~~~sKLvvi~IaN-TmdlPEr~l~nrvsSRl 566 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQ-------------DVLYNIFD-------WPTLKNSKLVVIAIAN-TMDLPERLLMNRVSSRL 566 (767)
T ss_pred CCEEEEeccHHHHhcccH-------------HHHHHHhc-------CCcCCCCceEEEEecc-cccCHHHHhccchhhhc
Confidence 456999999999999843 33333322 3333344455555543 222232222 1233465
Q ss_pred C-eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccC
Q psy2392 1096 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1096 ~-i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
. -|+.|.|++.++|.+|+. .+| .|+ -.|..+|++.+|+.-+.+.
T Consensus 567 g~tRi~F~pYth~qLq~Ii~----------~RL---~~~-~~f~~~aielvarkVAavS 611 (767)
T KOG1514|consen 567 GLTRICFQPYTHEQLQEIIS----------ARL---KGL-DAFENKAIELVARKVAAVS 611 (767)
T ss_pred cceeeecCCCCHHHHHHHHH----------Hhh---cch-hhcchhHHHHHHHHHHhcc
Confidence 4 367899999999999998 111 233 2578899998888666553
|
|
| >KOG0478|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.002 Score=78.63 Aligned_cols=120 Identities=24% Similarity=0.307 Sum_probs=72.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeeccCce--EEEEecCCCCC--CCC-------
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIKTDH--ILFIASGAFHL--AKP------- 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~t~~--ilfI~~gaf~~--~~p------- 1084 (1165)
.+||-.|||+||+..+ .+.-|+..||..+|+. |-|.+.+=| ..+||+.+=.. -+|
T Consensus 526 D~GiCCIDEFDKM~dS-------------trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eN 592 (804)
T KOG0478|consen 526 DNGICCIDEFDKMSDS-------------TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIEN 592 (804)
T ss_pred CCceEEchhhhhhhHH-------------HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhc
Confidence 6799999999999766 4557999999988875 666555433 33455532111 111
Q ss_pred CCCchhhhccCCeEE-EcCCCCHHHHHHHHh-------h---------hHHHhHHHHHHHHhhcCCceEeCHHHHHHHHH
Q psy2392 1085 SDLIPELQGRFPIRV-ELDSLSISDFTRIMT-------S---------TNVCLTKQYEALLATEGIKIEFVDDGIQRLAE 1147 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v-~l~~l~~~~l~~il~-------~---------~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~ 1147 (1165)
-+|-|.|++||.++. -|++.++.-=.++.+ | -..++++-|...- .+.+.-..++||...+..
T Consensus 593 I~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yA-rk~i~p~l~~ea~~~l~~ 671 (804)
T KOG0478|consen 593 INLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYA-RKNIHPALSPEASQALIQ 671 (804)
T ss_pred cCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHH-hccCCccccHHHHHHHHH
Confidence 247799999999754 456665541111111 1 1234455555443 345566778888877765
Q ss_pred HHh
Q psy2392 1148 IAY 1150 (1165)
Q Consensus 1148 ~a~ 1150 (1165)
.-+
T Consensus 672 ayv 674 (804)
T KOG0478|consen 672 AYV 674 (804)
T ss_pred Hhh
Confidence 433
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0022 Score=71.07 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=50.9
Q ss_pred HHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHH------hCCCceEEec
Q psy2392 178 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL------SNAPFIKIEA 251 (1165)
Q Consensus 178 ~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~------l~~~~i~ld~ 251 (1165)
...|+..|.-...+-....+.|..--.+ ....+||.||+|.|||.||+.+-+. +.-+|+.++|
T Consensus 179 l~~lksgiatrnp~fnrmieqierva~r-----------sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevnc 247 (531)
T COG4650 179 LDFLKSGIATRNPHFNRMIEQIERVAIR-----------SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNC 247 (531)
T ss_pred HHHHHhcccccChHHHHHHHHHHHHHhh-----------ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEee
Confidence 3455556655555544444444321001 1267999999999999999988764 3689999999
Q ss_pred cccccccccccchhhHHHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDI 274 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~ 274 (1165)
..+.. ++..+.+|..
T Consensus 248 atlrg--------d~amsalfgh 262 (531)
T COG4650 248 ATLRG--------DTAMSALFGH 262 (531)
T ss_pred eeecC--------chHHHHHHhh
Confidence 98653 3445666655
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00068 Score=71.38 Aligned_cols=43 Identities=33% Similarity=0.672 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~ 263 (1165)
.++++||||+||||+|+.|++.++.+++.+|.-.+ .+||...+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~-~~~~~~~~ 44 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF-QPNWQERD 44 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe-ccccccCC
Confidence 58899999999999999999999999998887543 45666554
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=75.00 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
.+++|+||||+|||.||.++|+.+ +.+++.++.++
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 469999999999999999999987 45555555443
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0003 Score=78.83 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+++|+||||||||+||.+|+..+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH
Confidence 699999999999999999999876
|
|
| >PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.11 Score=62.11 Aligned_cols=121 Identities=17% Similarity=0.291 Sum_probs=79.8
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCC--CCCCCCCCC--chhhhccC
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGA--FHLAKPSDL--IPELQGRF 1095 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~ga--f~~~~p~dl--~pel~gR~ 1095 (1165)
+|+|||.+.+-+-+. +++|+-.=+.|+.+++...- | ...|+.||.+|+ |-...+..+ .|+|++|+
T Consensus 242 lI~lDE~e~l~kl~~-----~~~R~~~ye~lr~lidd~~~----G--~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL 310 (416)
T PF10923_consen 242 LILLDELENLYKLRN-----DQAREKNYEALRQLIDDIDQ----G--RAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRL 310 (416)
T ss_pred EEEEechHHHHhcCC-----hHHHHHHHHHHHHHHHHHhc----C--CCCceEEEEeeCHHHhhCccccccccHHHHHHH
Confidence 899999998876532 33455455678888874221 1 235677877775 332322222 35555554
Q ss_pred C--------------eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeec
Q psy2392 1096 P--------------IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVI 1161 (1165)
Q Consensus 1096 ~--------------i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~niga 1161 (1165)
. ..+.|+||+.++|+.++. ++..-|.... +....++++.++.+++.++. ++|+
T Consensus 311 ~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~~----klr~i~a~~~---~~~~~v~d~~l~~~~~~~~~------r~G~ 377 (416)
T PF10923_consen 311 AEEFFADDGFDNLRAPVIRLQPLTPEELLELLE----KLRDIYAEAY---GYESRVDDEELKAFAQHVAG------RLGG 377 (416)
T ss_pred hccccccccccCccCceecCCCCCHHHHHHHHH----HHHHHHHhhC---CCCCCCCHHHHHHHHHHHHh------ccCc
Confidence 3 456899999999998888 6666565544 34467999999999998886 4666
Q ss_pred ccc
Q psy2392 1162 IYH 1164 (1165)
Q Consensus 1162 r~~ 1164 (1165)
.++
T Consensus 378 ~~~ 380 (416)
T PF10923_consen 378 DVF 380 (416)
T ss_pred ccc
Confidence 543
|
Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins. |
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00057 Score=70.99 Aligned_cols=32 Identities=44% Similarity=0.573 Sum_probs=28.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+..++|+||||||||++|+.||+.++.+|+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 57899999999999999999999999887753
|
|
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00056 Score=71.00 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+..++|+||||||||++|+.||+.++.+++..|
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 479999999999999999999999988777544
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0011 Score=69.89 Aligned_cols=46 Identities=30% Similarity=0.575 Sum_probs=36.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhh
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 864 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~ 864 (1165)
.++++||||+||||+|+.|++.++.+++.+|.-. ..+||...+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~-~~~~~~~~~~~~ 47 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH-FQPNWQERDDDD 47 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE-eccccccCCHHH
Confidence 4789999999999999999999999999888644 345676655333
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0025 Score=72.15 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=49.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee--eceeecCceEEEEEeCCcccCCCCCCchhhhCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--KYGIIKTDHILFIASGAFHLAKPSDLIPELQGR 496 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~--~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R 496 (1165)
+..|+|||++.--.+...+ .. ..-..|.+++|.+..-. +..-..-.++.|||+.+-...+ ..+.|-|++.
T Consensus 100 k~lv~fiDDlN~p~~d~yg---tq----~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr-~~is~R~~r~ 171 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYG---TQ----PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR-NPISPRFLRH 171 (272)
T ss_dssp SEEEEEEETTT-S---TTS---------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT---SHHHHHHTT
T ss_pred cEEEEEecccCCCCCCCCC---Cc----CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC-CCCChHHhhh
Confidence 3569999998866655443 11 12224456666543221 1223445678899885432222 2488899999
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|.+ +.+..++.+.+..|..
T Consensus 172 f~i-~~~~~p~~~sl~~If~ 190 (272)
T PF12775_consen 172 FNI-LNIPYPSDESLNTIFS 190 (272)
T ss_dssp EEE-EE----TCCHHHHHHH
T ss_pred eEE-EEecCCChHHHHHHHH
Confidence 987 4899999999999984
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0016 Score=67.06 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
...+.++||||+||||++..+++.+.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 46899999999999999999999984
|
|
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00093 Score=70.06 Aligned_cols=49 Identities=37% Similarity=0.589 Sum_probs=38.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDI 274 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~ 274 (1165)
.++.|+|++|+||||++++||+.|+.+|+..|.- .+ ...+..+.++|+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~--Ie-----~~~g~sI~eIF~~ 51 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE--IE-----KRTGMSIAEIFEE 51 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH--HH-----HHHCcCHHHHHHH
Confidence 5899999999999999999999999999988852 12 1223447777766
|
|
| >PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.066 Score=63.88 Aligned_cols=130 Identities=15% Similarity=0.248 Sum_probs=82.4
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCC--cccCCCC-----------
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGA--FHLAKPS----------- 487 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~ga--f~~~~p~----------- 487 (1165)
=+|+|||.+.+.+-+. +.+++-.-+.|+.+++... .| ...++.|+.+|+ |-...+.
T Consensus 241 LlI~lDE~e~l~kl~~-----~~~R~~~ye~lr~lidd~~----~G--~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~R 309 (416)
T PF10923_consen 241 LLILLDELENLYKLRN-----DQAREKNYEALRQLIDDID----QG--RAPGLYFVFAGTPEFFEDGRRGVYSYEALAQR 309 (416)
T ss_pred eEEEEechHHHHhcCC-----hHHHHHHHHHHHHHHHHHh----cC--CCCceEEEEeeCHHHhhCccccccccHHHHHH
Confidence 3889999998875432 3445556667888887421 11 245777888875 2211111
Q ss_pred -----CCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccC
Q psy2392 488 -----DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIG 562 (1165)
Q Consensus 488 -----~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~G 562 (1165)
.-.+++.+-....|.|++|+.+++..++ .++..-+... .+....++++.+..+++.++. ..|
T Consensus 310 L~~~~~~~~~~~n~~~pvIrL~~l~~eel~~l~----~klr~i~a~~---~~~~~~v~d~~l~~~~~~~~~------r~G 376 (416)
T PF10923_consen 310 LAEEFFADDGFDNLRAPVIRLQPLTPEELLELL----EKLRDIYAEA---YGYESRVDDEELKAFAQHVAG------RLG 376 (416)
T ss_pred HhccccccccccCccCceecCCCCCHHHHHHHH----HHHHHHHHhh---CCCCCCCCHHHHHHHHHHHHh------ccC
Confidence 1134455544567899999999999888 3444444433 345578999999999999986 677
Q ss_pred cchh---HHHHHHHH
Q psy2392 563 ARRL---YTAMEKLL 574 (1165)
Q Consensus 563 AR~l---~~~ie~~l 574 (1165)
+.-- +.+|...+
T Consensus 377 ~~~~~tPR~~ik~fv 391 (416)
T PF10923_consen 377 GDVFVTPREFIKDFV 391 (416)
T ss_pred cccccCHHHHHHHHH
Confidence 7422 44555544
|
Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins. |
| >KOG0480|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.00079 Score=81.37 Aligned_cols=72 Identities=17% Similarity=0.286 Sum_probs=50.8
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhh-hcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRR-QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r-~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
.-....|...|--.|.|.+.+|.-|.-.+.-...+ .+-.-++|. --|+|++|-||+||+-+-++.++.+...
T Consensus 333 ~nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRG---Dinv~iVGDPgt~KSQfLk~v~~fsPR~ 405 (764)
T KOG0480|consen 333 ENLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRG---DINVCIVGDPGTGKSQFLKAVCAFSPRS 405 (764)
T ss_pred chHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccC---CceEEEeCCCCccHHHHHHHHhccCCcc
Confidence 44456667777779999999999988777543211 110111222 3699999999999999999999888653
|
|
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0011 Score=69.41 Aligned_cols=70 Identities=31% Similarity=0.436 Sum_probs=48.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDR 896 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~ 896 (1165)
.++.|+|++|+||||+.++||+.++.+|+-.|. +.+. ..| ..+.++|+.- -....-.-+.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~--~Ie~-~~g----~sI~eIF~~~------------GE~~FR~~E~~ 63 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ--EIEK-RTG----MSIAEIFEEE------------GEEGFRRLETE 63 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH--HHHH-HHC----cCHHHHHHHH------------hHHHHHHHHHH
Confidence 579999999999999999999999999987664 2222 222 3366666542 12224455777
Q ss_pred HHHhhcCCc
Q psy2392 897 VIDILVPSK 905 (1165)
Q Consensus 897 vv~~ll~~~ 905 (1165)
++..+++..
T Consensus 64 vl~~l~~~~ 72 (172)
T COG0703 64 VLKELLEED 72 (172)
T ss_pred HHHHHhhcC
Confidence 788787753
|
|
| >KOG1970|consensus | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.022 Score=68.55 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=33.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceE-Eeccccccccccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIK-IEATKFTEVGYVGRD 263 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~-ld~s~~~~~GyvG~~ 263 (1165)
.-+||+||+||||||..+.||+++|..++. .+...+..+++.+..
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~ 156 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNE 156 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccccccc
Confidence 578999999999999999999999876654 333334445555443
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0026 Score=71.04 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=47.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++||++|++... .++.||+.+|...- |.+||..+ .+|..+.|.+++|+-.
T Consensus 89 ~KV~II~~ae~m~~~-------------AaNaLLK~LEEPp~----------~t~fiLit----~~~~~lLpTI~SRCq~ 141 (261)
T PRK05818 89 KKIYIIYGIEKLNKQ-------------SANSLLKLIEEPPK----------NTYGIFTT----RNENNILNTILSRCVQ 141 (261)
T ss_pred CEEEEeccHhhhCHH-------------HHHHHHHhhcCCCC----------CeEEEEEE----CChHhCchHhhhheee
Confidence 469999999999987 67799999997543 34555543 4789999999999876
Q ss_pred EEEcCCC
Q psy2392 1098 RVELDSL 1104 (1165)
Q Consensus 1098 ~v~l~~l 1104 (1165)
+.|.++
T Consensus 142 -~~~~~~ 147 (261)
T PRK05818 142 -YVVLSK 147 (261)
T ss_pred -eecCCh
Confidence 578887
|
|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0009 Score=69.79 Aligned_cols=32 Identities=38% Similarity=0.620 Sum_probs=29.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
++++.||||||||++|+.||+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 69999999999999999999999999876553
|
|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00086 Score=69.93 Aligned_cols=32 Identities=38% Similarity=0.620 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
+++++||||||||++|+.||+.++.+|+..|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 79999999999999999999999999987764
|
|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0098 Score=63.77 Aligned_cols=128 Identities=17% Similarity=0.261 Sum_probs=88.2
Q ss_pred HHHHhhhcCCCc---cccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccch
Q psy2392 369 IKTMFSVIGNHR---KKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISR 445 (1165)
Q Consensus 369 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~ 445 (1165)
...+...++++. =....++|.+++.++...... ...+-++||++|+++..
T Consensus 17 ~~~l~~~~~~~~~~~f~~~~i~Vd~iReii~~~~~~----------------~~~~k~iI~~a~~l~~~----------- 69 (206)
T PRK08485 17 KEELINEFGKKNLRFFIKEEFKIEDAKEVIAEAYIA----------------ESEEKIIVIAAPSYGIE----------- 69 (206)
T ss_pred HHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHhhC----------------CCCcEEEEEchHhhCHH-----------
Confidence 334555555544 012268899999888664421 12345668999999876
Q ss_pred hhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe------------eEecCCCCHHHHHH
Q psy2392 446 AGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI------------RVELDSLSISDFTR 513 (1165)
Q Consensus 446 ~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~------------~v~~~~L~~~~l~~ 513 (1165)
.++.||..+|. ...|++||..+ .+|..+.|.++||+.+ ...|++|+.+++..
T Consensus 70 --A~NaLLK~LEE----------Pp~~~~fiL~t----~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~ 133 (206)
T PRK08485 70 --AQNALLKILEE----------PPKNICFIIVA----KSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYE 133 (206)
T ss_pred --HHHHHHHHhcC----------CCCCeEEEEEe----CChHhCchHHHhhheeccccccccccccccccCCCCHHHHHH
Confidence 56699999996 45677777663 5788999999999975 57899999999988
Q ss_pred HHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 514 IMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 514 Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
.|+. +..+++ ...+++++.|+..+..
T Consensus 134 ~L~~------------~~ke~~--~~~~ea~~lIa~la~~ 159 (206)
T PRK08485 134 FLKE------------LEKENK--LSKEELKELIESLLKE 159 (206)
T ss_pred HHHH------------HHHccc--ccHHHHHHHHHHHHHH
Confidence 8841 223333 4566777777766643
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0011 Score=70.08 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.0
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|+|+|||||||+++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999999887655
|
|
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.001 Score=70.30 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|+|+|||||||+++.||+.++.+|+.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 5899999999999999999999998886655
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.001 Score=70.23 Aligned_cols=32 Identities=34% Similarity=0.608 Sum_probs=29.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
+++|+|+||||||++++.||+.++.+|+.+|.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~ 33 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD 33 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence 68999999999999999999999988877764
|
|
| >COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.004 Score=65.17 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=43.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcccc-----cccccChhhHHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEV-----GYVGRDVDTIIRDLIDIS 873 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~-----GyvG~~~~~~l~~lf~~a 873 (1165)
+..+.|.|.+|+||||+|.++.+.+ |...+.+|+..+... ||.-++....++.+-..|
T Consensus 23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevA 88 (197)
T COG0529 23 GAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVA 88 (197)
T ss_pred CeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHH
Confidence 4688999999999999999999988 788899998776542 454444444455554444
|
|
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0012 Score=69.89 Aligned_cols=31 Identities=35% Similarity=0.630 Sum_probs=28.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
+++|+|+|||||||+++.+|+.++.+|+.+|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999887765
|
|
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0012 Score=67.19 Aligned_cols=31 Identities=45% Similarity=0.798 Sum_probs=27.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
+++|+||||||||++|+.+|+.++.+++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4799999999999999999999998877544
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0017 Score=72.72 Aligned_cols=36 Identities=31% Similarity=0.542 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
..+++|+||||||||.||-+++..+ |..+.-+..++
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~e 143 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPD 143 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3799999999999999999999988 44444444443
|
|
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0012 Score=67.26 Aligned_cols=31 Identities=45% Similarity=0.798 Sum_probs=27.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+++++||||||||++|+.||+.++.+++..|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4789999999999999999999988877555
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0018 Score=79.39 Aligned_cols=65 Identities=20% Similarity=0.277 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
++..|..+ ++++-..+-++.+..++...+. ... ...-+||+||||||||+++++||++++.....
T Consensus 11 ~ky~P~~~-----~eLavhkkKv~eV~~wl~~~~~-----~~~----~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 11 EKYAPKTL-----DELAVHKKKVEEVRSWLEEMFS-----GSS----PKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred hhcCCCCH-----HHhhccHHHHHHHHHHHHHHhc-----cCC----CcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 46666666 5566666667777888765321 111 12567889999999999999999999876654
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0011 Score=66.67 Aligned_cols=31 Identities=39% Similarity=0.669 Sum_probs=25.7
Q ss_pred EEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
++++|||||||||+|+.+++.++ ...++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHH
Confidence 68999999999999999999998 44455433
|
... |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0017 Score=68.35 Aligned_cols=33 Identities=30% Similarity=0.581 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
.+++++||||+|||++++.||+.++.+++..|.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~ 34 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDF 34 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccH
Confidence 378999999999999999999999988888773
|
|
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0018 Score=68.15 Aligned_cols=32 Identities=31% Similarity=0.623 Sum_probs=29.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.+++|+||||+|||++++.||+.++.+|+..|
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36899999999999999999999999888766
|
|
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0059 Score=63.42 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=0.0
Q ss_pred CCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcccc-----cccccChhhHHHHHHHHHHhhhhh------h
Q psy2392 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEV-----GYVGRDVDTIIRDLIDISIKQTRE------F 880 (1165)
Q Consensus 815 ~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~-----GyvG~~~~~~l~~lf~~a~~~~~~------~ 880 (1165)
++..++|.|.||+||||+|++|.+.+ +.+.+.+|+..+... ||.-++....++.+...|....+. .
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEec
Q psy2392 881 EINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELN 946 (1165)
Q Consensus 881 ~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~ 946 (1165)
.+++ -...|+..|+.+.++++ .+|+|..|
T Consensus 81 ~isp-----------------------------------~~~~R~~~R~~~~~~~f--~eVyv~~~ 109 (156)
T PF01583_consen 81 FISP-----------------------------------YREDREWARELIPNERF--IEVYVDCP 109 (156)
T ss_dssp ---------------------------------------SHHHHHHHHHHHHTTEE--EEEEEES-
T ss_pred eccC-----------------------------------chHHHHHHHHhCCcCce--EEEEeCCC
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1165 | ||||
| 1g4a_E | 443 | Crystal Structures Of The Hslvu Peptidase-Atpase Co | 1e-158 | ||
| 1g4a_E | 443 | Crystal Structures Of The Hslvu Peptidase-Atpase Co | 1e-143 | ||
| 1do2_A | 442 | Trigonal Crystal Form Of Heat Shock Locus U (Hslu) | 1e-158 | ||
| 1do2_A | 442 | Trigonal Crystal Form Of Heat Shock Locus U (Hslu) | 1e-143 | ||
| 1e94_E | 449 | Hslv-Hslu From E.Coli Length = 449 | 1e-158 | ||
| 1e94_E | 449 | Hslv-Hslu From E.Coli Length = 449 | 1e-143 | ||
| 1g3i_A | 444 | Crystal Structure Of The Hsluv Protease-Chaperone C | 1e-151 | ||
| 1g3i_A | 444 | Crystal Structure Of The Hsluv Protease-Chaperone C | 1e-136 | ||
| 1im2_A | 444 | Hslu, Haemophilus Influenzae, Selenomethionine Vari | 1e-145 | ||
| 1im2_A | 444 | Hslu, Haemophilus Influenzae, Selenomethionine Vari | 1e-132 | ||
| 1ofh_A | 310 | Asymmetric Complex Between Hslv And I-domain Delete | 2e-67 | ||
| 1ofh_A | 310 | Asymmetric Complex Between Hslv And I-domain Delete | 2e-53 | ||
| 1e94_A | 175 | Hslv-Hslu From E.Coli Length = 175 | 8e-43 | ||
| 1e94_A | 175 | Hslv-Hslu From E.Coli Length = 175 | 8e-43 | ||
| 1ned_A | 183 | Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms R | 9e-43 | ||
| 1ned_A | 183 | Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms R | 9e-43 | ||
| 1g3i_G | 174 | Crystal Structure Of The Hsluv Protease-Chaperone C | 1e-42 | ||
| 1g3i_G | 174 | Crystal Structure Of The Hsluv Protease-Chaperone C | 1e-42 | ||
| 1m4y_A | 171 | Crystal Structure Of Hslv From Thermotoga Maritima | 3e-38 | ||
| 1m4y_A | 171 | Crystal Structure Of Hslv From Thermotoga Maritima | 3e-38 | ||
| 1yyf_D | 181 | Correction Of X-Ray Intensities From An Hslv-Hslu C | 2e-37 | ||
| 1yyf_D | 181 | Correction Of X-Ray Intensities From An Hslv-Hslu C | 2e-37 | ||
| 2z3a_A | 180 | Crystal Structure Of Bacillus Subtilis Codw, A Non- | 8e-37 | ||
| 2z3a_A | 180 | Crystal Structure Of Bacillus Subtilis Codw, A Non- | 8e-37 | ||
| 3ty6_A | 183 | Atp-Dependent Protease Hslv From Bacillus Anthracis | 5e-36 | ||
| 3ty6_A | 183 | Atp-Dependent Protease Hslv From Bacillus Anthracis | 5e-36 | ||
| 3hws_A | 363 | Crystal Structure Of Nucleotide-Bound Hexameric Clp | 1e-17 | ||
| 3hws_A | 363 | Crystal Structure Of Nucleotide-Bound Hexameric Clp | 1e-17 | ||
| 3hws_A | 363 | Crystal Structure Of Nucleotide-Bound Hexameric Clp | 3e-13 | ||
| 3hte_A | 363 | Crystal Structure Of Nucleotide-Free Hexameric Clpx | 1e-17 | ||
| 3hte_A | 363 | Crystal Structure Of Nucleotide-Free Hexameric Clpx | 1e-17 | ||
| 3hte_A | 363 | Crystal Structure Of Nucleotide-Free Hexameric Clpx | 3e-13 | ||
| 1um8_A | 376 | Crystal Structure Of Helicobacter Pylori Clpx Lengt | 2e-15 | ||
| 1um8_A | 376 | Crystal Structure Of Helicobacter Pylori Clpx Lengt | 2e-14 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 3e-05 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 3e-05 | ||
| 4eiw_A | 508 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-05 | ||
| 4eiw_A | 508 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-05 | ||
| 2dhr_A | 499 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-05 | ||
| 2dhr_A | 499 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-05 | ||
| 2ce7_A | 476 | Edta Treated Length = 476 | 4e-05 | ||
| 2ce7_A | 476 | Edta Treated Length = 476 | 4e-05 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 8e-05 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 8e-05 | ||
| 3kds_E | 465 | Apo-ftsh Crystal Structure Length = 465 | 2e-04 | ||
| 3kds_E | 465 | Apo-ftsh Crystal Structure Length = 465 | 2e-04 | ||
| 4b4t_M | 434 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-04 | ||
| 4b4t_M | 434 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-04 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 4e-04 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 4e-04 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 5e-04 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 5e-04 | ||
| 1qvr_A | 854 | Crystal Structure Analysis Of Clpb Length = 854 | 7e-04 | ||
| 1qvr_A | 854 | Crystal Structure Analysis Of Clpb Length = 854 | 7e-04 |
| >pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism Length = 443 | Back alignment and structure |
|
| >pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism Length = 443 | Back alignment and structure |
|
| >pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli Length = 442 | Back alignment and structure |
|
| >pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli Length = 442 | Back alignment and structure |
|
| >pdb|1E94|E Chain E, Hslv-Hslu From E.Coli Length = 449 | Back alignment and structure |
|
| >pdb|1E94|E Chain E, Hslv-Hslu From E.Coli Length = 449 | Back alignment and structure |
|
| >pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 444 | Back alignment and structure |
|
| >pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 444 | Back alignment and structure |
|
| >pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant Length = 444 | Back alignment and structure |
|
| >pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant Length = 444 | Back alignment and structure |
|
| >pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310 | Back alignment and structure |
|
| >pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310 | Back alignment and structure |
|
| >pdb|1E94|A Chain A, Hslv-Hslu From E.Coli Length = 175 | Back alignment and structure |
|
| >pdb|1E94|A Chain A, Hslv-Hslu From E.Coli Length = 175 | Back alignment and structure |
|
| >pdb|1NED|A Chain A, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms Resolution Length = 183 | Back alignment and structure |
|
| >pdb|1NED|A Chain A, Crystal Structure Of Hslv (Clpq) At 3.8 Angstroms Resolution Length = 183 | Back alignment and structure |
|
| >pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 174 | Back alignment and structure |
|
| >pdb|1G3I|G Chain G, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 174 | Back alignment and structure |
|
| >pdb|1M4Y|A Chain A, Crystal Structure Of Hslv From Thermotoga Maritima Length = 171 | Back alignment and structure |
|
| >pdb|1M4Y|A Chain A, Crystal Structure Of Hslv From Thermotoga Maritima Length = 171 | Back alignment and structure |
|
| >pdb|1YYF|D Chain D, Correction Of X-Ray Intensities From An Hslv-Hslu Co- Crystal Containing Lattice Translocation Defects Length = 181 | Back alignment and structure |
|
| >pdb|1YYF|D Chain D, Correction Of X-Ray Intensities From An Hslv-Hslu Co- Crystal Containing Lattice Translocation Defects Length = 181 | Back alignment and structure |
|
| >pdb|2Z3A|A Chain A, Crystal Structure Of Bacillus Subtilis Codw, A Non- Canonical Hslv-Like Peptidase With An Impaired Catalytic Apparatus Length = 180 | Back alignment and structure |
|
| >pdb|2Z3A|A Chain A, Crystal Structure Of Bacillus Subtilis Codw, A Non- Canonical Hslv-Like Peptidase With An Impaired Catalytic Apparatus Length = 180 | Back alignment and structure |
|
| >pdb|3TY6|A Chain A, Atp-Dependent Protease Hslv From Bacillus Anthracis Str. Ames Length = 183 | Back alignment and structure |
|
| >pdb|3TY6|A Chain A, Atp-Dependent Protease Hslv From Bacillus Anthracis Str. Ames Length = 183 | Back alignment and structure |
|
| >pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363 | Back alignment and structure |
|
| >pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363 | Back alignment and structure |
|
| >pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363 | Back alignment and structure |
|
| >pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363 | Back alignment and structure |
|
| >pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363 | Back alignment and structure |
|
| >pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363 | Back alignment and structure |
|
| >pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376 | Back alignment and structure |
|
| >pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 | Back alignment and structure |
|
| >pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 | Back alignment and structure |
|
| >pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 | Back alignment and structure |
|
| >pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 | Back alignment and structure |
|
| >pdb|2CE7|A Chain A, Edta Treated Length = 476 | Back alignment and structure |
|
| >pdb|2CE7|A Chain A, Edta Treated Length = 476 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 | Back alignment and structure |
|
| >pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 | Back alignment and structure |
|
| >pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 | Back alignment and structure |
|
| >pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb Length = 854 | Back alignment and structure |
|
| >pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb Length = 854 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Length = 444 | Back alignment and structure |
|---|
Score = 662 bits (1711), Expect = 0.0
Identities = 265/438 (60%), Positives = 357/438 (81%), Gaps = 7/438 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 127
Query: 296 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 354
E+R++D L+P + + + N +++ STRQ FRK+LREG LD+KEIEI+++
Sbjct: 128 EERILDALLPPAKNQWGEVE--NHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGV 185
Query: 355 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 414
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKAI
Sbjct: 186 EIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAI 245
Query: 415 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 474
+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHIL
Sbjct: 246 DAVEQNGIVFIDEIDKICKK-GEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 304
Query: 475 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 534
FIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATEG
Sbjct: 305 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 364
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS---LLVDAD 591
+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF++++++ + +DA
Sbjct: 365 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAA 424
Query: 592 YVNSRLGDLSINEDLSRY 609
YV LG++ NEDLSR+
Sbjct: 425 YVADALGEVVENEDLSRF 442
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Length = 444 | Back alignment and structure |
|---|
Score = 595 bits (1535), Expect = 0.0
Identities = 242/387 (62%), Positives = 317/387 (81%), Gaps = 4/387 (1%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 8 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 68 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 127
Query: 894 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHM- 952
E+R++D L+P + + + N +++ STRQ FRK+LREG LD+KEIEI+++
Sbjct: 128 EERILDALLPPAKNQWGEVE--NHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGV 185
Query: 953 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 1012
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKAI
Sbjct: 186 EIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAI 245
Query: 1013 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 1072
+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHIL
Sbjct: 246 DAVEQNGIVFIDEIDKICKK-GEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 304
Query: 1073 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 1132
FIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATEG
Sbjct: 305 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 364
Query: 1133 IKIEFVDDGIQRLAEIAYCINERTENI 1159
+ I F D ++++AE A+ +NE+TENI
Sbjct: 365 VNIAFTTDAVKKIAEAAFRVNEKTENI 391
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 | Back alignment and structure |
|---|
Score = 390 bits (1004), Expect = e-127
Identities = 129/289 (44%), Positives = 189/289 (65%), Gaps = 9/289 (3%)
Query: 324 STRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKT 383
+ R R R L + E+ + ++ P G+ + +I + + N
Sbjct: 26 AVAIALRNRWRRMQLQE-PLRHEVTPKN--ILMIGPTGVGKT--EIARRLAKLANAPFIK 80
Query: 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDI 443
+ + + E + + + + AI+ VEQNGI+F+DEIDKI + + + D+
Sbjct: 81 VEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG-EYSGADV 139
Query: 444 SRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVEL 503
SR GVQRDLLPLVEG+TV+TK+G++KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL
Sbjct: 140 SREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 199
Query: 504 DSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGA 563
+LS +DF RI+T + LT+QY+AL+ATEG+ I F D ++++AE A+ +NE+TENIGA
Sbjct: 200 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGA 259
Query: 564 RRLYTAMEKLLEEVSFN---SNNISLLVDADYVNSRLGDLSINEDLSRY 609
RRL+T ME+L++++SF+ N ++ +DA YV LG++ NEDLSR+
Sbjct: 260 RRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRF 308
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 | Back alignment and structure |
|---|
Score = 325 bits (836), Expect = e-102
Identities = 105/238 (44%), Positives = 152/238 (63%), Gaps = 6/238 (2%)
Query: 922 STRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKT 981
+ R R R L + E+ + ++ P G+ + +I + + N
Sbjct: 26 AVAIALRNRWRRMQLQE-PLRHEVTPKN--ILMIGPTGVGKT--EIARRLAKLANAPFIK 80
Query: 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDI 1041
+ + + E + + + + AI+ VEQNGI+F+DEIDKI + + + D+
Sbjct: 81 VEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKG-EYSGADV 139
Query: 1042 SRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVEL 1101
SR GVQRDLLPLVEG+TV+TK+G++KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL
Sbjct: 140 SREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 199
Query: 1102 DSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI 1159
+LS +DF RI+T + LT+QY+AL+ATEG+ I F D ++++AE A+ +NE+TENI
Sbjct: 200 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENI 257
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 6e-39
Identities = 86/132 (65%), Positives = 103/132 (78%), Gaps = 9/132 (6%)
Query: 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEI 234
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEI
Sbjct: 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 66
Query: 235 ARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS---IKQTREF------EIN 285
ARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + I + EI+
Sbjct: 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEID 126
Query: 286 KVRTRAEDAAED 297
K+ + E + D
Sbjct: 127 KICKKGEYSGAD 138
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 6e-39
Identities = 86/132 (65%), Positives = 103/132 (78%), Gaps = 9/132 (6%)
Query: 773 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEI 832
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEI
Sbjct: 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEI 66
Query: 833 ARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDIS---IKQTREF------EIN 883
ARRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + I + EI+
Sbjct: 67 ARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEID 126
Query: 884 KVRTRAEDAAED 895
K+ + E + D
Sbjct: 127 KICKKGEYSGAD 138
|
| >1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 2e-54
Identities = 90/155 (58%), Positives = 119/155 (76%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTIL VRR + +GGDGQVTFG+ ++K +A+KVRKL + +VLAG AGS ADA TL D F
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 140
EA L + GNL +A+VELAK+WR DR LRRLEA+LL A++E II+GNG+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 141 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 175
AIGSGG +A +AAKAL NT+L EI++K++ IA
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIA 155
|
| >1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4 Length = 171 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 2e-54
Identities = 90/155 (58%), Positives = 119/155 (76%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTIL VRR + +GGDGQVTFG+ ++K +A+KVRKL + +VLAG AGS ADA TL D F
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 738
EA L + GNL +A+VELAK+WR DR LRRLEA+LL A++E II+GNG+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 739 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 773
AIGSGG +A +AAKAL NT+L EI++K++ IA
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIA 155
|
| >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 5e-53
Identities = 85/162 (52%), Positives = 122/162 (75%), Gaps = 3/162 (1%)
Query: 17 KFQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFT 75
F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADAFT
Sbjct: 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFT 61
Query: 76 LLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP 135
L + FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+EP
Sbjct: 62 LFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEP 121
Query: 136 ENGIGAIGSGGIFAQSAAKALQENT--ELMPDEIIKKSLVIA 175
++GI AIGSGG +A +A +AL+++ + EI + +L A
Sbjct: 122 DDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETA 163
|
| >2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A Length = 180 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 5e-53
Identities = 85/162 (52%), Positives = 122/162 (75%), Gaps = 3/162 (1%)
Query: 615 KFQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFT 673
F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADAFT
Sbjct: 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFT 61
Query: 674 LLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP 733
L + FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+EP
Sbjct: 62 LFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEP 121
Query: 734 ENGIGAIGSGGIFAQSAAKALQENT--ELMPDEIIKKSLVIA 773
++GI AIGSGG +A +A +AL+++ + EI + +L A
Sbjct: 122 DDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETA 163
|
| >1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174 | Back alignment and structure |
|---|
Score = 178 bits (452), Expect = 1e-51
Identities = 97/156 (62%), Positives = 125/156 (80%), Gaps = 1/156 (0%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+SVRR +V +GGDGQV+ GN +MK +A+KVR+LY +VLAG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP-ENGI 139
E LE HQG+L++++VELAK+WR DR LR+LEAML+ A+ + +LIITG GDV++P E+ I
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 140 GAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 175
AIGSGG +A SAA+AL ENTEL EI++KSL IA
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIA 156
|
| >1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A Length = 174 | Back alignment and structure |
|---|
Score = 178 bits (452), Expect = 1e-51
Identities = 97/156 (62%), Positives = 125/156 (80%), Gaps = 1/156 (0%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+SVRR +V +GGDGQV+ GN +MK +A+KVR+LY +VLAG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP-ENGI 737
E LE HQG+L++++VELAK+WR DR LR+LEAML+ A+ + +LIITG GDV++P E+ I
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 738 GAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 773
AIGSGG +A SAA+AL ENTEL EI++KSL IA
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIA 156
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-27
Identities = 72/241 (29%), Positives = 106/241 (43%), Gaps = 61/241 (25%)
Query: 411 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 463
Q + NV+ Q GI+F+DEIDKI+ R S+N + D+S GVQ+ LL +VEG+ VN
Sbjct: 127 QASDWNVQKAQKGIVFIDEIDKIS-RLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPK 185
Query: 464 --------KYGIIKTDHILFIASGAF--------------------------------HL 483
+ I T ILFI +GAF HL
Sbjct: 186 GGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245
Query: 484 AKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 538
+ DL IPEL GR P+ LDS+S+ I+ L KQY+ L + + +
Sbjct: 246 VQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLI 305
Query: 539 FVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF---NSNNISLLVDADYVNS 595
F ++ I+ +A++A ER GAR L +E ++ F + + D V
Sbjct: 306 FEEEAIKEIAQLAL---ER--KTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLK 360
Query: 596 R 596
+
Sbjct: 361 Q 361
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 62/194 (31%), Positives = 90/194 (46%), Gaps = 53/194 (27%)
Query: 1009 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 1061
Q + NV+ Q GI+F+DEIDKI +R S+N + D+S GVQ+ LL +VEG+ VN
Sbjct: 127 QASDWNVQKAQKGIVFIDEIDKI-SRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPK 185
Query: 1062 --------KYGIIKTDHILFIASGAF--------------------------------HL 1081
+ I T ILFI +GAF HL
Sbjct: 186 GGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 245
Query: 1082 AKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIE 1136
+ DL IPEL GR P+ LDS+S+ I+ L KQY+ L + + +
Sbjct: 246 VQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLI 305
Query: 1137 FVDDGIQRLAEIAY 1150
F ++ I+ +A++A
Sbjct: 306 FEEEAIKEIAQLAL 319
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 16/114 (14%)
Query: 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ----------------EITP 218
E+ + LD YVIGQ +AK+ ++A+ N ++R L++ E++
Sbjct: 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSK 72
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
NIL+IGPTG GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLL 126
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 43/114 (37%), Positives = 64/114 (56%), Gaps = 16/114 (14%)
Query: 773 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ----------------EITP 816
E+ + LD YVIGQ +AK+ ++A+ N ++R L++ E++
Sbjct: 13 KELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSK 72
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
NIL+IGPTG GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+
Sbjct: 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLL 126
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 6e-26
Identities = 67/225 (29%), Positives = 97/225 (43%), Gaps = 62/225 (27%)
Query: 411 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 463
QK +V+ Q GI+++D+IDKI+ R S N + D+S GVQ+ LL L+EGT
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKIS-RKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164
Query: 464 --------KYGIIKTDHILFIASGAF---------------------------------- 481
++ + T ILFI GAF
Sbjct: 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE 224
Query: 482 --HLAKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 534
+P DL IPE GR P+ L+ LS +I+ LTKQY+AL EG
Sbjct: 225 LLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEG 284
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579
+ +EF D+ + +A+ A R GAR L + +E L + +
Sbjct: 285 VDLEFRDEALDAIAKKAM---AR--KTGARGLRSIVEAALLDTMY 324
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 175 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ-EITPKNILMIGPTGVGKTE 233
EI + LD YVIGQ +AK+ +A+A+ N ++R + E+ NIL+IGPTG GKT
Sbjct: 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 66
Query: 234 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 272
+A LA+L + PF +AT TE GYVG DV+ II+ L+
Sbjct: 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 46/99 (46%), Positives = 64/99 (64%), Gaps = 1/99 (1%)
Query: 773 AEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQ-EITPKNILMIGPTGVGKTE 831
EI + LD YVIGQ +AK+ +A+A+ N ++R + E+ NIL+IGPTG GKT
Sbjct: 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTL 66
Query: 832 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLI 870
+A LA+L + PF +AT TE GYVG DV+ II+ L+
Sbjct: 67 LAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 6e-23
Identities = 60/197 (30%), Positives = 86/197 (43%), Gaps = 57/197 (28%)
Query: 1009 QKAINNVE--QNGIIFLDEIDKITTRSSQNNNT--DISRAGVQRDLLPLVEGTTVNT--- 1061
QK +V+ Q GI+++D+IDKI +R S N + D+S GVQ+ LL L+EGT
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKI-SRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQ 164
Query: 1062 --------KYGIIKTDHILFIASGAF---------------------------------- 1079
++ + T ILFI GAF
Sbjct: 165 GGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGE 224
Query: 1080 --HLAKPSDL-----IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 1132
+P DL IPE GR P+ L+ LS +I+ LTKQY+AL EG
Sbjct: 225 LLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEG 284
Query: 1133 IKIEFVDDGIQRLAEIA 1149
+ +EF D+ + +A+ A
Sbjct: 285 VDLEFRDEALDAIAKKA 301
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 6e-14
Identities = 90/637 (14%), Positives = 182/637 (28%), Gaps = 190/637 (29%)
Query: 252 TKFTEVGYVGRDV-----DTIIRDL--IDI-----SIKQTREF-EINKVRTRAEDAAEDR 298
+ E Y +D+ D + + D+ SI E I + R
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT--LR 66
Query: 299 VIDILVPSKEK-------SNLDTDFN-------NENNN--------ISTR-------QIF 329
+ L+ +E+ L ++ E I R Q+F
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 330 RKR----------LREGALDNKEIEIELNDTGPHMEI----MSPPGMEEMTAQ------I 369
K LR+ L EL P + + G + +
Sbjct: 127 AKYNVSRLQPYLKLRQALL-------ELR---PAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 370 KTMFS--V----IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE----- 418
+ + + N +++ + + ID + + I++++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 419 -------QNGIIFLDEI-DK-------------ITTRSSQNNNTDISRAGVQRDLLPLVE 457
+N ++ L + + +TTR TD A + L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSAATTTHI-SLDH 293
Query: 458 GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 517
+ T D + + +P DL E+ P R+ + + SI D + T
Sbjct: 294 HSMTLTP------DEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDG--LATW 344
Query: 518 TNVCLTKQYEALLATEGIKIEFVDDGIQR-----LAEIAYCINERTENIGAR---RLYTA 569
N + L + ++ R L+ + + +I ++
Sbjct: 345 DNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS-----VFPPSAHIPTILLSLIWFD 398
Query: 570 MEKLLEEVSFNSNNISLLVDADYVNSRLGDLSINEDL---SRYDSGMEKFQGTTILSVRR 626
+ K V N + LV+ S + SI +L + + + +I+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR----SIVDHYN 454
Query: 627 GNKVSLGGDGQVT-----FGNVI---MKNS--AKKV---RKLYQN-----------QVLA 662
K D F + I +KN +++ R ++ +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 663 GIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTL 722
+GS + L F++ + + + +R + + L E L
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDP-------------KYERLVNAILDFLPKI--EENL 559
Query: 723 IITGNGDV----LEPENGIGAIGSGGIFAQSAAKALQ 755
I + D+ L E+ IF + A K +Q
Sbjct: 560 ICSKYTDLLRIALMAED-------EAIFEE-AHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-13
Identities = 80/530 (15%), Positives = 151/530 (28%), Gaps = 156/530 (29%)
Query: 76 LLDFFEANLE-KHQGNLMRASV------ELAKEWRNDRTLRRLEAMLLTANRETTLIITG 128
D F N + K ++ ++ + + RL LL+ E
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 129 NGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDK-YVIG 187
+VL F S K E + S++ + + D+ Y
Sbjct: 85 --EVLRINYK---------FLMSPIKT----------EQRQPSMMTRMYIEQRDRLYNDN 123
Query: 188 QNRAKRAVAIALRNRWRRQQITGPLQ---QEITP-KNILMIGPTGVGKT----EIARRLA 239
Q AK V R Q L+ E+ P KN+L+ G G GKT ++
Sbjct: 124 QVFAKYNV-------SRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 240 KLSNAPFIKIEATKF-TEVGYVGRDVDTI-----------------------IRDLIDIS 275
F KI F + + I+ I
Sbjct: 176 VQCKMDF-KI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 276 IKQTREFEINKVRTRA----EDAAEDRVID-------ILVPSKEKSNLDTDFNNENNNIS 324
+ R +K + + + IL+ ++ K TDF +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAAT--- 285
Query: 325 TRQIFRKRLREGALDNKE--------IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 376
T I L E ++ D + +P + + I+ +
Sbjct: 286 TTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 377 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK----AI-----------------N 415
N + K+ I+ ++ L E ++ ++ +
Sbjct: 345 DNWKHVNCD-KLTTIIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 416 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTT------VNTKYGIIK 469
++ + ++ ++++ K + Q + IS + +L +E V+ Y I K
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK 457
Query: 470 T---DHIL----------FIASGAFHL--AKPSDLIPELQGRFPIRVELD 504
T D ++ I HL + + + F V LD
Sbjct: 458 TFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTL----FR-MVFLD 499
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-13
Identities = 80/530 (15%), Positives = 151/530 (28%), Gaps = 156/530 (29%)
Query: 674 LLDFFEANLE-KHQGNLMRASV------ELAKEWRNDRTLRRLEAMLLTANRETTLIITG 726
D F N + K ++ ++ + + RL LL+ E
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 727 NGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDK-YVIG 785
+VL F S K E + S++ + + D+ Y
Sbjct: 85 --EVLRINYK---------FLMSPIKT----------EQRQPSMMTRMYIEQRDRLYNDN 123
Query: 786 QNRAKRAVAIALRNRWRRQQITGPLQ---QEITP-KNILMIGPTGVGKT----EIARRLA 837
Q AK V R Q L+ E+ P KN+L+ G G GKT ++
Sbjct: 124 QVFAKYNV-------SRLQPYL-KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 838 KLSNAPFIKIEATKF-TEVGYVGRDVDTI-----------------------IRDLIDIS 873
F KI F + + I+ I
Sbjct: 176 VQCKMDF-KI----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 874 IKQTREFEINKVRTRA----EDAAEDRVID-------ILVPSKEKSNLDTDFNNENNNIS 922
+ R +K + + + IL+ ++ K TDF +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--TDFLSAAT--- 285
Query: 923 TRQIFRKRLREGALDNKE--------IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 974
T I L E ++ D + +P + + I+ +
Sbjct: 286 TTHISLDHHSMT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344
Query: 975 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQK----AI-----------------N 1013
N + K+ I+ ++ L E ++ ++ +
Sbjct: 345 DNWKHVNCD-KLTTIIESSLNV-----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 1014 NVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTT------VNTKYGIIK 1067
++ + ++ ++++ K + Q + IS + +L +E V+ Y I K
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD-HYNIPK 457
Query: 1068 T---DHIL----------FIASGAFHL--AKPSDLIPELQGRFPIRVELD 1102
T D ++ I HL + + + F V LD
Sbjct: 458 TFDSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMTL----FR-MVFLD 499
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 1e-11
Identities = 96/730 (13%), Positives = 222/730 (30%), Gaps = 230/730 (31%)
Query: 281 EFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340
+FE + + + +D ++ + + + D + + + I K
Sbjct: 8 DFETGEHQYQYKD-----ILSVFEDAFVD---NFDCKDVQD--MPKSILSK--------- 48
Query: 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEA 400
+EI+ I+ +F + + +++ +++ ++ ++
Sbjct: 49 EEID----------HIIMSKDAVS---GTLRLFWTLLSKQEEM----VQKFVEEVLRINY 91
Query: 401 NKLLN--EDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRD------- 451
L++ + E +Q ++ ++++ D++ N+N ++ V R
Sbjct: 92 KFLMSPIKTEQRQPSMMTRM-----YIEQRDRL-----YNDNQVFAKYNVSRLQPYLKLR 141
Query: 452 --LLPL--VEGTTVNTKYGIIKT-----------------DHILFIASGAFHLAKPSDLI 490
LL L + ++ G KT I ++ + P ++
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK--NCNSPETVL 199
Query: 491 PELQ---------------GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYE-ALLATEG 534
LQ I++ + S+ ++ R++ S K YE LL
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AELRRLLKS------KPYENCLL---- 248
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVN 594
+ + + +Q A+ N+ + L T + + D+++
Sbjct: 249 --V--LLN-VQN-AKAW-----NAFNLSCKILLT------------TRFKQV---TDFLS 282
Query: 595 S-RLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVR 653
+ +S++ + + + ++L + D +
Sbjct: 283 AATTTHISLDH----HSMTLTPDEVKSLLLKYLDCRPQ---D---------LPREVLTTN 326
Query: 654 KLYQNQVLAGIAGSTADAFTLLDFFE-ANLEKHQGNLMRASVEL--AKEWRNDRTLRRLE 710
L+ IA S D D ++ N +K ++ +S+ + E+R + RL
Sbjct: 327 PR----RLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYR--KMFDRL- 378
Query: 711 AMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSL 770
++ + I P + I I + ++ +++ K SL
Sbjct: 379 SVF----PPSAHI---------PTILLSLIWFDVIK---------SDVMVVVNKLHKYSL 416
Query: 771 VI---AEIVSEL-DKYVIGQNRAKRAVAIALRNRWRRQ-QITGPLQQEITPKNIL----- 820
V E + Y+ + + K AL I + L
Sbjct: 417 VEKQPKESTISIPSIYL--ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 821 ------MIGPTGVGKTEIARRLAKLSNAPFI--KIEATKFTEVGYVGRDVDTIIRDLIDI 872
+ + + R + + F+ KI +I+ L
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMV--FLDFRFLEQKIRHD-----STAWNASGSILNTLQQ- 526
Query: 873 SIKQTREFEINKVRTRAEDAAEDRVIDIL--VPSKEKSNL----DTD-----FNNENNNI 921
+K + + I + E V IL +P E NL TD E+ I
Sbjct: 527 -LKFYKPY-I----CDNDPKYERLVNAILDFLPKIE-ENLICSKYTDLLRIALMAEDEAI 579
Query: 922 ---STRQIFR 928
+ +Q+ R
Sbjct: 580 FEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 8e-09
Identities = 54/389 (13%), Positives = 107/389 (27%), Gaps = 119/389 (30%)
Query: 850 TKFTEVGYVGRDV-----DTIIRDL--IDI-----SIKQTREF-EINKVRTRAEDAAEDR 896
+ E Y +D+ D + + D+ SI E I + R
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT--LR 66
Query: 897 VIDILVPSKEK-------SNLDTDFN-------NENNN--------ISTR-------QIF 927
+ L+ +E+ L ++ E I R Q+F
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 928 RKR----------LREGALDNKEIEIELNDTGPHMEI----MSPPGMEEMTAQ------I 967
K LR+ L EL P + + G + +
Sbjct: 127 AKYNVSRLQPYLKLRQALL-------ELR---PAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 968 KTMFS--V----IGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE----- 1016
+ + + N +++ + + ID + + I++++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 1017 -------QNGIIFLDEI-DK-------------ITTRSSQNNNTDISRAGVQRDLLPLVE 1055
+N ++ L + + +TTR TD A + L
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK--QVTDFLSAATTTHI-SLDH 293
Query: 1056 GTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTS 1115
+ T D + + +P DL E+ P R+ + + SI D + T
Sbjct: 294 HSMTLTP------DEVKSLLLKYLDC-RPQDLPREVLTTNPRRLSIIAESIRDG--LATW 344
Query: 1116 TNVCLTKQYEALLATEGIKIEFVDDGIQR 1144
N + L + ++ R
Sbjct: 345 DNW-KHVNCDKLTTIIESSLNVLEPAEYR 372
|
| >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 19/150 (12%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTTI+++ V L GD + T GN+I + V + AGIAG+ A L+
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEY-SAAGIAGTAGIAIELVRL 123
Query: 80 FEANLEKHQGNLMRAS--VELAKEWRN------DRTLRRLEAMLLTA--------NRETT 123
F LE ++ A + ++ L + L
Sbjct: 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183
Query: 124 LI--ITGNGDVLEPENGIGAIGSGGIFAQS 151
I G E G A+GSG +FA+S
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKS 213
|
| >1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H Length = 294 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 4e-08
Identities = 37/150 (24%), Positives = 55/150 (36%), Gaps = 19/150 (12%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTTI+++ V L GD + T GN+I + V + AGIAG+ A L+
Sbjct: 65 GTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEY-SAAGIAGTAGIAIELVRL 123
Query: 678 FEANLEKHQGNLMRAS--VELAKEWRN------DRTLRRLEAMLLTA--------NRETT 721
F LE ++ A + ++ L + L
Sbjct: 124 FAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAG 183
Query: 722 LI--ITGNGDVLEPENGIGAIGSGGIFAQS 749
I G E G A+GSG +FA+S
Sbjct: 184 RIVSYDVVGGRYEERAGYHAVGSGSLFAKS 213
|
| >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTTI++++ V + GD + T GN+I +KV GIAG+ A A
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDY-TATGIAGTAAVAVEFARL 115
Query: 80 FEANLEKHQGNLMR------ASVELAKEWRNDRTLRR--LEAMLLTA----------NRE 121
+ LE ++ LA R + L A+ L A +
Sbjct: 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAG 175
Query: 122 TTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKAL 156
+ G E G A+GSG +FA+S+ K L
Sbjct: 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL 210
|
| >2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H Length = 291 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTTI++++ V + GD + T GN+I +KV GIAG+ A A
Sbjct: 57 GTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDY-TATGIAGTAAVAVEFARL 115
Query: 678 FEANLEKHQGNLMR------ASVELAKEWRNDRTLRR--LEAMLLTA----------NRE 719
+ LE ++ LA R + L A+ L A +
Sbjct: 116 YAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAG 175
Query: 720 TTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKAL 754
+ G E G A+GSG +FA+S+ K L
Sbjct: 176 RIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKL 210
|
| >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 25/152 (16%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
G +I++V + V LG D + T G I K+ +++ + +GS AD + D
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDK-IWCCRSGSAADTQAIADI 67
Query: 80 FEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP- 135
+ +LE + S E A + + N++ +I+ G D +
Sbjct: 68 VQYHLELYTSQYGTPSTETA--------ASVFKELCY-ENKDNLTAGIIVAGYDDKNKGE 118
Query: 136 -----------ENGIGAIGSGGIFAQSAAKAL 156
+ GSG F
Sbjct: 119 VYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN 150
|
| >1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ... Length = 205 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 29/152 (19%), Positives = 52/152 (34%), Gaps = 25/152 (16%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
G +I++V + V LG D + T G I K+ +++ + +GS AD + D
Sbjct: 9 GASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDK-IWCCRSGSAADTQAIADI 67
Query: 678 FEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP- 733
+ +LE + S E A + + N++ +I+ G D +
Sbjct: 68 VQYHLELYTSQYGTPSTETA--------ASVFKELCY-ENKDNLTAGIIVAGYDDKNKGE 118
Query: 734 -----------ENGIGAIGSGGIFAQSAAKAL 754
+ GSG F
Sbjct: 119 VYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKN 150
|
| >3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 29 GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQL 87
Query: 80 FEANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP 135
+N+E H V + ++ L + LI+ G D
Sbjct: 88 IGSNIELHSLYTSREPRV---------VSALQMLKQHLFKYQGHIGAYLIVAG-VDPTGS 137
Query: 136 ------------ENGIGAIGSGGIFAQS 151
++GSG + A +
Sbjct: 138 HLFSIHAHGSTDVGYYLSLGSGSLAAMA 165
|
| >3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* Length = 261 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 27/148 (18%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 29 GTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQL 87
Query: 678 FEANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP 733
+N+E H V + ++ L + LI+ G D
Sbjct: 88 IGSNIELHSLYTSREPRV---------VSALQMLKQHLFKYQGHIGAYLIVAG-VDPTGS 137
Query: 734 ------------ENGIGAIGSGGIFAQS 749
++GSG + A +
Sbjct: 138 HLFSIHAHGSTDVGYYLSLGSGSLAAMA 165
|
| >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 23/146 (15%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTT + + + V + + +VT N IM + KK+ ++ IAG DA L+ +
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTY-TGMTIAGLVGDAQVLVRY 66
Query: 80 FEANLEKHQGNL-MRASVE-LAKEWRNDRTLRRLEAMLLTANRETTLIITG--------- 128
+A LE ++ + +E +A N L +++ M L++ G
Sbjct: 67 MKAELELYRLQRRVNMPIEAVATLLSN--MLNQVKYMPYMVQ----LLVGGIDTAPHVFS 120
Query: 129 ---NGDVLEPENGIGAIGSGGIFAQS 151
G + E+ + GSG F
Sbjct: 121 IDAAGGSV--EDIYASTGSGSPFVYG 144
|
| >1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H Length = 217 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 23/146 (15%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GTT + + + V + + +VT N IM + KK+ ++ IAG DA L+ +
Sbjct: 8 GTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTY-TGMTIAGLVGDAQVLVRY 66
Query: 678 FEANLEKHQGNL-MRASVE-LAKEWRNDRTLRRLEAMLLTANRETTLIITG--------- 726
+A LE ++ + +E +A N L +++ M L++ G
Sbjct: 67 MKAELELYRLQRRVNMPIEAVATLLSN--MLNQVKYMPYMVQ----LLVGGIDTAPHVFS 120
Query: 727 ---NGDVLEPENGIGAIGSGGIFAQS 749
G + E+ + GSG F
Sbjct: 121 IDAAGGSV--EDIYASTGSGSPFVYG 144
|
| >3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 27/163 (16%)
Query: 604 EDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAG 663
+D D ++ GTT L+ R + + D + T GN + + KKV ++ +L
Sbjct: 61 DDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPF-LLGT 119
Query: 664 IAGSTADAFTLLDFFEANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRETTL 722
+AG AD + + H+ R SV ++ + L+ + L
Sbjct: 120 MAGGAADCQFWETWLGSQCRLHELREKERISVA---------AASKILSNLVYQYKGAGL 170
Query: 723 ----IITGNGDVLEP------------ENGIGAIGSGGIFAQS 749
+I G P + I +GSG FA
Sbjct: 171 SMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYG 213
|
| >3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* Length = 287 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 32/149 (21%), Positives = 53/149 (35%), Gaps = 27/149 (18%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GTT L+ R + + D + T GN + + KKV ++ +L +AG AD +
Sbjct: 75 GTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPF-LLGTMAGGAADCQFWETW 133
Query: 80 FEANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRETTL----IITGNGDVLE 134
+ H+ R SV ++ + L+ + L +I G
Sbjct: 134 LGSQCRLHELREKERISVA---------AASKILSNLVYQYKGAGLSMGTMICGYTRKEG 184
Query: 135 P------------ENGIGAIGSGGIFAQS 151
P + I +GSG FA
Sbjct: 185 PTIYYVDSDGTRLKGDIFCVGSGQTFAYG 213
|
| >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 19/149 (12%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+++ V L GD + T GN+I +KV + AGIAG+ A L+ F
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEY-SAAGIAGTAGIAIELVRLF 59
Query: 81 EANLEKHQGNLMRAS--VELAKEWRN------DRTLRRLEAMLLTA--------NRETTL 124
LE ++ A + ++ L + L
Sbjct: 60 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119
Query: 125 I--ITGNGDVLEPENGIGAIGSGGIFAQS 151
I G E G A+GSG +FA+S
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKS 148
|
| >1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 Length = 235 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 7e-07
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 19/149 (12%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+++ V L GD + T GN+I +KV + AGIAG+ A L+ F
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEY-SAAGIAGTAGIAIELVRLF 59
Query: 679 EANLEKHQGNLMRAS--VELAKEWRN------DRTLRRLEAMLLTA--------NRETTL 722
LE ++ A + ++ L + L
Sbjct: 60 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119
Query: 723 I--ITGNGDVLEPENGIGAIGSGGIFAQS 749
I G E G A+GSG +FA+S
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKS 148
|
| >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 27/147 (18%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQLI 59
Query: 81 EANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP- 135
+N+E H V + ++ L + LI+ G D
Sbjct: 60 GSNIELHSLYTSREPRV---------VSALQMLKQHLFKYQGHIGAYLIVAG-VDPTGSH 109
Query: 136 -----------ENGIGAIGSGGIFAQS 151
++GSG + A +
Sbjct: 110 LFSIHAHGSTDVGYYLSLGSGSLAAMA 136
|
| >1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ... Length = 222 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 27/147 (18%), Positives = 51/147 (34%), Gaps = 27/147 (18%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQLI 59
Query: 679 EANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRE---TTLIITGNGDVLEP- 733
+N+E H V + ++ L + LI+ G D
Sbjct: 60 GSNIELHSLYTSREPRV---------VSALQMLKQHLFKYQGHIGAYLIVAG-VDPTGSH 109
Query: 734 -----------ENGIGAIGSGGIFAQS 749
++GSG + A +
Sbjct: 110 LFSIHAHGSTDVGYYLSLGSGSLAAMA 136
|
| >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT L+ + + V + D + T G I + KKV ++ +L +AG AD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPY-LLGTMAGGAADCSFWERLL 59
Query: 81 EANLEKHQ-GNLMRASVE-LAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP--- 135
++ N R SV +K N + + + M L+ +I G D P
Sbjct: 60 ARQCRIYELRNKERISVAAASKLLAN--MVYQYKGMGLSMG----TMICG-WDKRGPGLY 112
Query: 136 ---------ENGIGAIGSGGIFAQS 151
++GSG ++A
Sbjct: 113 YVDSEGNRISGATFSVGSGSVYAYG 137
|
| >1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K Length = 204 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 1e-06
Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 22/145 (15%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT L+ + + V + D + T G I + KKV ++ +L +AG AD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPY-LLGTMAGGAADCSFWERLL 59
Query: 679 EANLEKHQ-GNLMRASVE-LAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP--- 733
++ N R SV +K N + + + M L+ +I G D P
Sbjct: 60 ARQCRIYELRNKERISVAAASKLLAN--MVYQYKGMGLSMG----TMICG-WDKRGPGLY 112
Query: 734 ---------ENGIGAIGSGGIFAQS 749
++GSG ++A
Sbjct: 113 YVDSEGNRISGATFSVGSGSVYAYG 137
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 205 RQQITGPLQQ-----EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259
+QQ ++L+ GP GKT +A ++A+ SN PFIKI + +G+
Sbjct: 46 LDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGF 104
Query: 260 VGRDVDTIIRDL 271
++ +
Sbjct: 105 SETAKCQAMKKI 116
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 803 RQQITGPLQQ-----EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 857
+QQ ++L+ GP GKT +A ++A+ SN PFIKI + +G+
Sbjct: 46 LDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKM-IGF 104
Query: 858 VGRDVDTIIRDL 869
++ +
Sbjct: 105 SETAKCQAMKKI 116
|
| >1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 35/151 (23%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI V + + LG D + T G V+ + K+ + N + AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPN-IYCCGAGTAADTDMTTQLI 59
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLR-----RLEAMLLTANRE---TTLIITGNGDV 132
+NLE H R R R+ +L R L++ G DV
Sbjct: 60 SSNLELH-------------SLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGG-VDV 105
Query: 133 LEP------------ENGIGAIGSGGIFAQS 151
P + +GSG + A +
Sbjct: 106 TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMA 136
|
| >1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H Length = 234 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 35/151 (23%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI V + + LG D + T G V+ + K+ + N + AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPN-IYCCGAGTAADTDMTTQLI 59
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLR-----RLEAMLLTANRE---TTLIITGNGDV 730
+NLE H R R R+ +L R L++ G DV
Sbjct: 60 SSNLELH-------------SLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGG-VDV 105
Query: 731 LEP------------ENGIGAIGSGGIFAQS 749
P + +GSG + A +
Sbjct: 106 TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMA 136
|
| >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
G ++++ + V++ D ++ ++ + N +K+ V GI G D TL +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY--GHVFLGITGLATDVTTLNEM 65
Query: 80 FEANLEKHQ 88
F ++
Sbjct: 66 FRYKTNLYK 74
|
| >1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ... Length = 204 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
G ++++ + V++ D ++ ++ + N +K+ V GI G D TL +
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY--GHVFLGITGLATDVTTLNEM 65
Query: 678 FEANLEKHQ 686
F ++
Sbjct: 66 FRYKTNLYK 74
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 179 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARR 237
L V GQ++A A+ A++ R G L E P + L GPTGVGKTE+ +
Sbjct: 454 DRLKMLVFGQDKAIEALTEAIK-MAR----AG-LGHEHKPVGSFLFAGPTGVGKTEVTVQ 507
Query: 238 LAKLSNAPFIKIEATKFTEV-----------GYVGRD 263
L+K ++ + +++ E GYVG D
Sbjct: 508 LSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARR 835
L V GQ++A A+ A++ R G L E P + L GPTGVGKTE+ +
Sbjct: 454 DRLKMLVFGQDKAIEALTEAIK-MAR----AG-LGHEHKPVGSFLFAGPTGVGKTEVTVQ 507
Query: 836 LAKLSNAPFIKIEATKFTEV-----------GYVGRD 861
L+K ++ + +++ E GYVG D
Sbjct: 508 LSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFD 544
|
| >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT L+ R + + D + T GN + + K+V ++ +L +AG AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPF-LLGTMAGGAADCQFWETWL 59
Query: 81 EANLEKHQ 88
+ H+
Sbjct: 60 GSQCRLHE 67
|
| >1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ... Length = 212 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT L+ R + + D + T GN + + K+V ++ +L +AG AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPF-LLGTMAGGAADCQFWETWL 59
Query: 679 EANLEKHQ 686
+ H+
Sbjct: 60 GSQCRLHE 67
|
| >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
G TIL++ + + D +++ G I + K KL ++ + G +G D TL
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKL-TDKTVIGCSGFHGDCLTLTKI 67
Query: 80 FEANLEKHQ 88
EA L+ ++
Sbjct: 68 IEARLKMYK 76
|
| >1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L Length = 213 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
G TIL++ + + D +++ G I + K KL ++ + G +G D TL
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKL-TDKTVIGCSGFHGDCLTLTKI 67
Query: 678 FEANLEKHQ 686
EA L+ ++
Sbjct: 68 IEARLKMYK 76
|
| >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI++V+ V LG D + T G+ I K+ ++ + +GS AD + D
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDR-IFCCRSGSAADTQAVADAV 59
Query: 81 EANLEKHQ 88
L H
Sbjct: 60 TYQLGFHS 67
|
| >1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N Length = 205 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 9e-06
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI++V+ V LG D + T G+ I K+ ++ + +GS AD + D
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDR-IFCCRSGSAADTQAVADAV 59
Query: 679 EANLEKHQ 686
L H
Sbjct: 60 TYQLGFHS 67
|
| >1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
G TIL + + L GD + I KV + ++ G AD L+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDC-GDNIVMSANGFAADGDALVKR 67
Query: 80 FEANLEKHQ 88
F+ +++ +
Sbjct: 68 FKNSVKWYH 76
|
| >1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ... Length = 222 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
G TIL + + L GD + I KV + ++ G AD L+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDC-GDNIVMSANGFAADGDALVKR 67
Query: 678 FEANLEKHQ 686
F+ +++ +
Sbjct: 68 FKNSVKWYH 76
|
| >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
IL +R + V L VT G ++K+S K R+L + L AG D ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPH-TLMSFAGEAGDTVQFAEYI 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTAN 119
+AN++ + R D L
Sbjct: 61 QANIQLY-------------SIREDYELSPQAVSSFVRQ 86
|
| >1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ... Length = 198 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
IL +R + V L VT G ++K+S K R+L + L AG D ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPH-TLMSFAGEAGDTVQFAEYI 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTAN 717
+AN++ + R D L
Sbjct: 61 QANIQLY-------------SIREDYELSPQAVSSFVRQ 86
|
| >3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI++V V +G D +V+ G ++ K+ L+Q + ++GS ADA + D
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQR-IFCALSGSAADAQAIADMA 59
Query: 81 EANLEKHQ 88
LE H
Sbjct: 60 AYQLELHG 67
|
| >3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N Length = 199 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI++V V +G D +V+ G ++ K+ L+Q + ++GS ADA + D
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQR-IFCALSGSAADAQAIADMA 59
Query: 679 EANLEKHQ 686
LE H
Sbjct: 60 AYQLELHG 67
|
| >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT + + + V + + + T GN I +AKK+ ++ + AGS DA L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADR-MAMTTAGSVGDAQFLARII 59
Query: 81 EANLEKHQ 88
+ ++
Sbjct: 60 KIEANLYE 67
|
| >1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4 Length = 202 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT + + + V + + + T GN I +AKK+ ++ + AGS DA L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADR-MAMTTAGSVGDAQFLARII 59
Query: 679 EANLEKHQ 686
+ ++
Sbjct: 60 KIEANLYE 67
|
| >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT++L V+ V + D ++G++ + ++ ++ + + G +G AD L
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNS-TMLGASGDYADFQYLKQV 66
Query: 80 FEANLEKHQ 88
+ +
Sbjct: 67 LGQMVIDEE 75
|
| >1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M Length = 219 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GT++L V+ V + D ++G++ + ++ ++ + + G +G AD L
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNS-TMLGASGDYADFQYLKQV 66
Query: 678 FEANLEKHQ 686
+ +
Sbjct: 67 LGQMVIDEE 75
|
| >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 16 EKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFT 75
+ G +++++ N V++ D + ++ +K+ + + G+AG D T
Sbjct: 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDR-LYIGLAGLATDVQT 62
Query: 76 LLDFFEANLEKHQ 88
+ + L ++
Sbjct: 63 VAQRLKFRLNLYE 75
|
| >1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I Length = 205 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 11/73 (15%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 614 EKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFT 673
+ G +++++ N V++ D + ++ +K+ + + G+AG D T
Sbjct: 4 MSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDR-LYIGLAGLATDVQT 62
Query: 674 LLDFFEANLEKHQ 686
+ + L ++
Sbjct: 63 VAQRLKFRLNLYE 75
|
| >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 4/68 (5%), Positives = 14/68 (20%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
+ + V ++ + + VR+ + A
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTA-IGIACKDGVVLAVDRRITS 60
Query: 81 EANLEKHQ 88
+ +
Sbjct: 61 KLVKIRSI 68
|
| >3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii} Length = 264 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 4/68 (5%), Positives = 14/68 (20%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
+ + V ++ + + VR+ + A
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTA-IGIACKDGVVLAVDRRITS 60
Query: 679 EANLEKHQ 686
+ +
Sbjct: 61 KLVKIRSI 68
|
| >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
++ ++ + V + D V MK+ K+ K+ + +L G D ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLC-VGEAGDTVQFAEYI 60
Query: 81 EANLEKHQ 88
+ N++ ++
Sbjct: 61 QKNVQLYK 68
|
| >1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J Length = 201 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 11/68 (16%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
++ ++ + V + D V MK+ K+ K+ + +L G D ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLC-VGEAGDTVQFAEYI 60
Query: 679 EANLEKHQ 686
+ N++ ++
Sbjct: 61 QKNVQLYK 68
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 174 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 233
I+ + S L+K + ++ A R +A ++ +++ ++GP G+ K+
Sbjct: 13 ISRLSSSLEKGLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSL 56
Query: 234 IARRLAK-LSNAPFIKIEATKFT 255
IARRL NA + T+F+
Sbjct: 57 IARRLKFAFQNARAFEYLMTRFS 79
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} Length = 500 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 3e-05
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 772 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 831
I+ + S L+K + ++ A R +A ++ +++ ++GP G+ K+
Sbjct: 13 ISRLSSSLEKGLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSL 56
Query: 832 IARRLAK-LSNAPFIKIEATKFT 853
IARRL NA + T+F+
Sbjct: 57 IARRLKFAFQNARAFEYLMTRFS 79
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Length = 311 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 179 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARR 237
EL K V+GQ+ A RAVA A+R R R G L+ P + L +GPTGVGKTE+A+
Sbjct: 13 EELHKRVVGQDEAIRAVADAIR-RAR----AG-LKDPNRPIGSFLFLGPTGVGKTELAKT 66
Query: 238 LA 239
LA
Sbjct: 67 LA 68
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* Length = 311 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKTEIARR 835
EL K V+GQ+ A RAVA A+R R R G L+ P + L +GPTGVGKTE+A+
Sbjct: 13 EELHKRVVGQDEAIRAVADAIR-RAR----AG-LKDPNRPIGSFLFLGPTGVGKTELAKT 66
Query: 836 LA 837
LA
Sbjct: 67 LA 68
|
| >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 99
Query: 80 FEANLEKHQ 88
+ + ++
Sbjct: 100 LKDLVTENA 108
|
| >1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M* Length = 266 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 41 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 99
Query: 678 FEANLEKHQ 686
+ + ++
Sbjct: 100 LKDLVTENA 108
|
| >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 66
Query: 80 FEANLEKHQ 88
+ + ++
Sbjct: 67 LKDLVTENA 75
|
| >1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ... Length = 233 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 13/69 (18%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 66
Query: 678 FEANLEKHQ 686
+ + ++
Sbjct: 67 LKDLVTENA 75
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 179 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNI---LMIGPTGVGKTEIA 235
+ L VIGQ+ A AVA A+R R R G L+ P I + +GPTGVGKTE+A
Sbjct: 487 NILHSRVIGQDEAVVAVAKAVR-RAR----AG-LKDPKRP--IGSFIFLGPTGVGKTELA 538
Query: 236 RRLAK 240
R LA+
Sbjct: 539 RALAE 543
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} Length = 758 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-04
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 11/65 (16%)
Query: 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNI---LMIGPTGVGKTEIA 833
+ L VIGQ+ A AVA A+R R R G L+ P I + +GPTGVGKTE+A
Sbjct: 487 NILHSRVIGQDEAVVAVAKAVR-RAR----AG-LKDPKRP--IGSFIFLGPTGVGKTELA 538
Query: 834 RRLAK 838
R LA+
Sbjct: 539 RALAE 543
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 174 IAEIVSELDKYVIGQNRAKRAV----AIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 229
E++ ELD+ +IG K + A+ L R R++ L E ++ G G
Sbjct: 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKL---GLAHETPTLHMSFTGNPGT 78
Query: 230 GKTEIARRLAK-------LSNAPFIKIEATKFTEVGYVG 261
GKT +A ++A + + +
Sbjct: 79 GKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGH 117
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 1e-04
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 772 IAEIVSELDKYVIGQNRAKRAV----AIALRNRWRRQQITGPLQQEITPKNILMIGPTGV 827
E++ ELD+ +IG K + A+ L R R++ L E ++ G G
Sbjct: 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKL---GLAHETPTLHMSFTGNPGT 78
Query: 828 GKTEIARRLAK-------LSNAPFIKIEATKFTEVGYVG 859
GKT +A ++A + + +
Sbjct: 79 GKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGH 117
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 19/156 (12%)
Query: 158 ENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEIT 217
E E + I + E+ +L VIGQ A + A
Sbjct: 16 EYGESLELGIEFTTTEEIEVPEKLIDQVIGQEHAVEVIKTAANQ---------------- 59
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 277
+++L+IG G GK+ + + +A+L ++ + T+ ++
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119
Query: 278 QTREFEINKVRTRA---EDAAEDRVIDILVPSKEKS 310
+ RE ++ ++ + V +LV + ++
Sbjct: 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT 155
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} Length = 604 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 19/156 (12%)
Query: 756 ENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEIT 815
E E + I + E+ +L VIGQ A + A
Sbjct: 16 EYGESLELGIEFTTTEEIEVPEKLIDQVIGQEHAVEVIKTAANQ---------------- 59
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIK 875
+++L+IG G GK+ + + +A+L ++ + T+ ++
Sbjct: 60 KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRRIVE 119
Query: 876 QTREFEINKVRTRA---EDAAEDRVIDILVPSKEKS 908
+ RE ++ ++ + V +LV + ++
Sbjct: 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRT 155
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 34/92 (36%)
Query: 174 IAEIVS-----------------------ELDKYVIGQNRAKRAVAIALRNRWRRQQITG 210
IAEIVS EL K V+GQ+ A RAVA A+R R R G
Sbjct: 526 IAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIR-RAR----AG 580
Query: 211 PLQQEITPKNI---LMIGPTGVGKTEIARRLA 239
L+ P I L +GPTGVGKTE+A+ LA
Sbjct: 581 -LKDPNRP--IGSFLFLGPTGVGKTELAKTLA 609
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 Length = 854 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 38/92 (41%), Positives = 45/92 (48%), Gaps = 34/92 (36%)
Query: 772 IAEIVS-----------------------ELDKYVIGQNRAKRAVAIALRNRWRRQQITG 808
IAEIVS EL K V+GQ+ A RAVA A+R R R G
Sbjct: 526 IAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIR-RAR----AG 580
Query: 809 PLQQEITPKNI---LMIGPTGVGKTEIARRLA 837
L+ P I L +GPTGVGKTE+A+ LA
Sbjct: 581 -LKDPNRP--IGSFLFLGPTGVGKTELAKTLA 609
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +LM+GP G GKT +A+ +A + PF I + F E+ +VG
Sbjct: 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG 87
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +LM+GP G GKT +A+ +A + PF I + F E+ +VG
Sbjct: 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG 87
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG
Sbjct: 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG 91
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG
Sbjct: 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG 91
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG
Sbjct: 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG 115
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859
PK +L++GP GVGKT +AR +A + PFI + F E+ +VG
Sbjct: 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG 115
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 189 NRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
+ V + N + + +TG ++++++G +G GKT IA +A + F
Sbjct: 5 HHHSSGVDLGTENLYFQSMMTGE-----PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Length = 200 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 787 NRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
+ V + N + + +TG ++++++G +G GKT IA +A + F
Sbjct: 5 HHHSSGVDLGTENLYFQSMMTGE-----PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Length = 168 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 278
+++++IG G GK+ +A+ L + D D II + + +S+++
Sbjct: 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL---------------DTDMIISERVGLSVRE 52
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Length = 168 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 15/60 (25%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 876
+++++IG G GK+ +A+ L + D D II + + +S+++
Sbjct: 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL---------------DTDMIISERVGLSVRE 52
|
| >3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI + + V LG D + T +V+ S +K+ + + AG AD
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPK-IYCCGAGVAADTEMTTRMA 59
Query: 81 EANLEKHQ 88
+ +E H
Sbjct: 60 ASKMELHA 67
|
| >3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H Length = 234 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI + + V LG D + T +V+ S +K+ + + AG AD
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPK-IYCCGAGVAADTEMTTRMA 59
Query: 679 EANLEKHQ 686
+ +E H
Sbjct: 60 ASKMELHA 67
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Length = 175 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 278
KNI+ IG G GK+ +AR LAK + F+ D D +I + + +
Sbjct: 5 KNIVFIGFMGSGKSTLARALAKDLDLVFL---------------DSDFLIEQKFNQKVSE 49
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Length = 175 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 15/60 (25%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 876
KNI+ IG G GK+ +AR LAK + F+ D D +I + + +
Sbjct: 5 KNIVFIGFMGSGKSTLARALAKDLDLVFL---------------DSDFLIEQKFNQKVSE 49
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK--NILMIGPTGVGKTEIARRLAKLS 242
++GQ K A+ + + P +L+ G G GK+ R LA L
Sbjct: 26 IVGQEDMKLALLLTA----------------VDPGIGGVLVFGDRGTGKSTAVRALAAL- 68
Query: 243 NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVI 300
P +IEA + V ++ ++ ++ + V +EDRV+
Sbjct: 69 -LP--EIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPT----PVVDLPLGVSEDRVV 119
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK--NILMIGPTGVGKTEIARRLAKLS 840
++GQ K A+ + + P +L+ G G GK+ R LA L
Sbjct: 26 IVGQEDMKLALLLTA----------------VDPGIGGVLVFGDRGTGKSTAVRALAAL- 68
Query: 841 NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVI 898
P +IEA + V ++ ++ ++ + V +EDRV+
Sbjct: 69 -LP--EIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPT----PVVDLPLGVSEDRVV 119
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Length = 173 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
+ I M+G G G T + R LA+ F+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Length = 173 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 8e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
+ I M+G G G T + R LA+ F+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 134 EPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY----VIGQN 189
+NG G A + E + + ++I+ L++ EI+ + G
Sbjct: 33 GEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIE--LIMNEIMDHGPPVNWEDIAGVE 90
Query: 190 RAKRAV--AIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 247
AK + + R TG PK IL+ GP G GKT I + +A S A F
Sbjct: 91 FAKATIKEIVVWPM-LRPDIFTGLRG---PPKGILLFGPPGTGKTLIGKCIASQSGATFF 146
Query: 248 KIEATKFT 255
I A+ T
Sbjct: 147 SISASSLT 154
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 12/128 (9%)
Query: 732 EPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY----VIGQN 787
+NG G A + E + + ++I+ L++ EI+ + G
Sbjct: 33 GEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIE--LIMNEIMDHGPPVNWEDIAGVE 90
Query: 788 RAKRAV--AIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFI 845
AK + + R TG PK IL+ GP G GKT I + +A S A F
Sbjct: 91 FAKATIKEIVVWPM-LRPDIFTGLRG---PPKGILLFGPPGTGKTLIGKCIASQSGATFF 146
Query: 846 KIEATKFT 853
I A+ T
Sbjct: 147 SISASSLT 154
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1165 | |||
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 100.0 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 100.0 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 100.0 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 100.0 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 100.0 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 100.0 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 100.0 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.97 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.97 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.96 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.95 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.95 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.95 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.91 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.88 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 99.87 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.86 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 99.86 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 99.85 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 99.85 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 99.85 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 99.84 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 99.83 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 99.83 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 99.83 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 99.82 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.82 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 99.81 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 99.81 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.8 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.78 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.78 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.76 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.76 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.76 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.74 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.74 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.73 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.73 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.72 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.71 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.71 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.71 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.7 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.7 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.7 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.69 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.69 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.68 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.67 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.67 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.65 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.65 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.65 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.63 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.63 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.62 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.62 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.62 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.62 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.61 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.6 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.59 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.59 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.58 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.58 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.58 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.57 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.57 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.57 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.56 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.56 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.54 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.52 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.52 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.51 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.5 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.5 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.49 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.49 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.48 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.48 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.48 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.47 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.46 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.46 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.45 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.45 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.44 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.43 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.43 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.42 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.41 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.41 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.4 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.4 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.39 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.39 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.38 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.37 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.37 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.37 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.37 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.36 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.36 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.35 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.35 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.35 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.34 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.34 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.34 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.34 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.33 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.33 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.32 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.3 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.3 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.28 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.28 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.27 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.27 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.27 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.26 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.26 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.25 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.23 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.23 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.23 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.22 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.22 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.21 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.21 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.2 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.19 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.18 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.18 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.17 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.15 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.15 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.15 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.15 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.13 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.13 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.12 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.1 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.09 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.08 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.06 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.03 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.02 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.02 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.02 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.01 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 98.98 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.97 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 98.89 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 98.84 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.8 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.78 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 98.75 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 98.63 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.62 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.59 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.5 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 98.15 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.15 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.11 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 97.85 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 97.74 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.71 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 97.69 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 97.68 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.66 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.63 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 97.57 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.44 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.09 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.07 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.04 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.97 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.96 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.94 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.94 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.78 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.77 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.74 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 96.71 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.66 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.6 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.58 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.58 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.58 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.56 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.54 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.53 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.53 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.5 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.49 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.49 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.48 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.47 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.46 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.43 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.43 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.39 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.38 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 96.38 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.36 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.35 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.31 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.28 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.28 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.26 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.26 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.23 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.22 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.21 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.21 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.2 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.2 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.18 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.17 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.17 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.16 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.15 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.15 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.15 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.15 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.15 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.14 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.14 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 96.13 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.13 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.12 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.12 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.11 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.1 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.09 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.08 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.08 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.07 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.07 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 96.07 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.07 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 96.05 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.05 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.05 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.05 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.05 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.05 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.04 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.02 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.02 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.99 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.98 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.98 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.98 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 95.96 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.94 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.94 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.94 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.93 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 95.93 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.89 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.88 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 95.86 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 95.85 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 95.81 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.8 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 95.77 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.75 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 95.74 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.72 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 95.71 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.68 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.67 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.66 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.64 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.62 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.6 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 95.59 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.59 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.57 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 95.56 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.54 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.49 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.46 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.45 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.45 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 95.44 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 95.43 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.43 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 95.43 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 95.43 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.4 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.4 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.39 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.37 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.37 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.35 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.34 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 95.32 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 95.32 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.31 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.29 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.29 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.27 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 95.27 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.24 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 95.22 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.22 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.2 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.19 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.19 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.19 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 95.15 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.13 | |
| 1qzm_A | 94 | ATP-dependent protease LA; oligomerization domain, | 95.09 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.09 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.08 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.0 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.98 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.92 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.85 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.83 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 94.76 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.74 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 94.72 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.69 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.68 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.66 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 94.58 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 94.57 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 94.56 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 94.56 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 94.54 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 94.52 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.51 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 94.47 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.45 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.44 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 94.42 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 94.42 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 94.4 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 94.4 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.37 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.31 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 94.25 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.21 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.21 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.2 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.19 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 94.17 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 94.13 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 94.12 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 94.11 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.09 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 94.08 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 94.08 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 94.07 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 94.07 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 94.05 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 94.04 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 93.97 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 93.96 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 93.95 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 93.92 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 93.91 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 93.9 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.89 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 93.84 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 93.81 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.81 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 93.79 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 93.78 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 93.7 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 93.69 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 93.66 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 93.63 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 93.63 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 93.61 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 93.55 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 93.53 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 93.53 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 93.53 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.51 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 93.47 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 93.46 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 93.45 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 93.41 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 93.38 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 93.35 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 93.35 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 93.27 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 93.26 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 93.24 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.22 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 93.17 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 93.17 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 93.11 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 93.05 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 92.99 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 92.92 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 92.9 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 92.82 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 92.81 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.75 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 92.75 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 92.75 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 92.74 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 92.71 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 92.68 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 92.67 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 92.51 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 92.44 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 92.43 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 92.39 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 92.39 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 92.34 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 92.32 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 92.29 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 92.28 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 92.25 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 92.22 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 92.16 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 92.15 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 92.14 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 92.01 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 91.98 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 91.98 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 91.97 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 91.96 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 91.91 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 91.84 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 91.81 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 91.79 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 91.73 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 91.72 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 91.71 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 91.7 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 91.64 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 91.63 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 91.6 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 91.58 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 91.55 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 91.54 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 91.52 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 91.47 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 91.37 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 91.29 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 91.25 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 91.24 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 91.23 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 91.22 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 91.17 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 91.17 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 91.14 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 91.13 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 91.07 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 91.06 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 91.05 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 90.99 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 90.92 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 90.86 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 90.82 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 90.78 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 90.77 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 90.73 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 90.66 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 90.6 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 90.6 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 90.58 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 90.53 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 90.47 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 90.24 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 90.22 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 90.21 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 90.2 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 90.15 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 90.06 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 90.02 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 89.96 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 89.96 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 89.86 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 89.82 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 89.82 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 89.8 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 89.75 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 89.63 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 89.6 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 89.58 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 89.56 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 89.55 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 89.51 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 89.49 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 89.38 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 89.27 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 89.14 |
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-64 Score=593.41 Aligned_cols=435 Identities=61% Similarity=0.966 Sum_probs=312.7
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.++.+.|+++|+||+++|+.+..++.++|++.++....+...+++++||+||||||||++|+++|+.++.+|+.++
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 36899999999999999999999999999999999988777665545689999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCc--CCCCccccCCcCcchhhHHH
Q psy2392 251 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKE--KSNLDTDFNNENNNISTRQI 328 (1165)
Q Consensus 251 ~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~~ 328 (1165)
++.+.++||+|.+.+..+++++..+......++...+.......+++++++.|++.-. ..+..+ .+....+.+.
T Consensus 83 ~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v----~a~~TN~~~~ 158 (444)
T 1g41_A 83 ATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVEN----HDSHSSTRQA 158 (444)
T ss_dssp GGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred chhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhcccccccc----ccccccCHHH
Confidence 9999999999998789999999999888888888888888899999999999986310 000000 0000234677
Q ss_pred HHHHhhcCCCCCcEEEEEecCCC-CcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChh
Q psy2392 329 FRKRLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 407 (1165)
Q Consensus 329 ~~~~~~~g~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1165)
|...++.|.++|++|+|.+|+.. +.+++++.+||.+|+.++..||+++.+++++.++|+|+||+++|.++|++++++++
T Consensus 159 ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~ 238 (444)
T 1g41_A 159 FRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPE 238 (444)
T ss_dssp -------------------------------------------------------------------CCGGGSCSSCCHH
T ss_pred HHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHH
Confidence 88899999999999999998875 67889989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC
Q psy2392 408 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS 487 (1165)
Q Consensus 408 ~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~ 487 (1165)
+++++|+..+++++|+|+|||||++.+..+ +++|+|++|||++||+++||+.++++|+.++|+||+|||+|||+.++|+
T Consensus 239 ~~~~~ai~~ae~~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~ 317 (444)
T 1g41_A 239 ELKQKAIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS 317 (444)
T ss_dssp HHHHHHHHHHHHHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHHHhccCCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh
Confidence 999999999999999999999999987553 6789999999999999999999999999999999999999999999999
Q ss_pred CCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhH
Q psy2392 488 DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLY 567 (1165)
Q Consensus 488 ~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~ 567 (1165)
+++|||+||||++|+|++|+.+|+.+|+++|++.+++||.++++.+|+++.|+++|+++|++.|+++|..+.++|||+|+
T Consensus 318 dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~ 397 (444)
T 1g41_A 318 DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLH 397 (444)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHH
T ss_pred hcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 568 TAMEKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 568 ~~ie~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
++||+++++++|++|+.. ++||.++|++.+++.+++.||||||
T Consensus 398 ~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~~dl~~~~ 443 (444)
T 1g41_A 398 TVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFI 443 (444)
T ss_dssp HHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccccCCChhccc
Confidence 999999999999998643 8999999999999999999999997
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-63 Score=585.99 Aligned_cols=389 Identities=62% Similarity=0.971 Sum_probs=269.7
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++.+.|+++|+||+++++.+..++..+|++.++....+....++++||+||||||||++|+++|+.++.+|+.++
T Consensus 3 ~~tP~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 46899999999999999999999999999999999888776655445789999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCc--ccc-hhhHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE--NNN-ISTRQ 925 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~--~~~-~~~r~ 925 (1165)
++.+.++||+|.+.+..++++|..+....+.+.+..++....+.+++++++.||+.- ++.++.. ... .++++
T Consensus 83 ~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~-----dg~~~~~~v~a~~TN~~~ 157 (444)
T 1g41_A 83 ATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPA-----KNQWGEVENHDSHSSTRQ 157 (444)
T ss_dssp GGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred chhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHh-----hccccccccccccccCHH
Confidence 999999999998778899999999998888888888888888899999999999752 2111110 011 23455
Q ss_pred HHHHhhccCCCCCeEEEEEecCCC-CcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCH
Q psy2392 926 IFRKRLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 1004 (1165)
Q Consensus 926 ~~~~~l~~g~ld~r~v~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~ 1004 (1165)
.+..+|+.|.++|+.|+|++|+.. ++++||+++||++|..+++.||+.+.+++++++++||++|+++|.++|+++++|+
T Consensus 158 ~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~ 237 (444)
T 1g41_A 158 AFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINP 237 (444)
T ss_dssp --------------------------------------------------------------------CCGGGSCSSCCH
T ss_pred HHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCH
Confidence 667777777777899999999986 7899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCC
Q psy2392 1005 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP 1084 (1165)
Q Consensus 1005 ~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p 1084 (1165)
+.+.+.|+++++++||+|+||||||+..+++ ++.|+|+||||++||+++||++++++|+.++|+||||||+||||.++|
T Consensus 238 ~~~~~~ai~~ae~~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 238 EELKQKAIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHHHHHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHHHHhccCCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 9999999999999999999999999987654 678999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1085 SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
+|++|||+||||++|+|++|+.+|+.+|+++|++++++||.++++.+|++|.||++|+++||+.|+++|..++|+|||.
T Consensus 317 ~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~ 395 (444)
T 1g41_A 317 SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARR 395 (444)
T ss_dssp GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGH
T ss_pred hhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999994
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=425.96 Aligned_cols=348 Identities=21% Similarity=0.332 Sum_probs=273.3
Q ss_pred cCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHH
Q psy2392 626 RGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKEW 700 (1165)
Q Consensus 626 RG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ry 700 (1165)
+|.++|||+||..+|+++++.|+++.|| |+ .+. +.+|+.+++..||+++...|+.+|+ +++.+++.++.+|
T Consensus 313 ~~~~~~I~at~~~~~~~~~~~d~aL~~R--f~-~i~-v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 313 SGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KID-ITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp SCCCEEEEEECHHHHHCCCCCTTSSGGG--EE-EEE-CCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCchHHhhhhhcCHHHHhC--ce-EEE-cCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 4567899999999999999999999999 99 555 9999999999999999999999998 8999999999999
Q ss_pred hcccccchH--HHHhhhhhhhhhhhhcCCCCccCccccccccccccccHHHHHHHhhhccCCChHHH-HHhhhHHHHHHH
Q psy2392 701 RNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEI-IKKSLVIAEIVS 777 (1165)
Q Consensus 701 i~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~i~~i~~~~~~~~~~a~~l~~~t~~~~~~i-~~~~~~~~~l~~ 777 (1165)
+.++++||+ ++++.+++........ .....+....++.++..++++++..+ ..+...+..+.+
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~~~~--------------~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~~~l~~l~~ 454 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLMPVS--------------KRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGD 454 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHSSSC--------------CCCCSCCHHHHHHHHHHHSCCCCCCSSSSHHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHhccccc--------------ccCCccCHHHHHHHHHHhcCCCccccchhHHHHHHHHHH
Confidence 999999995 5577776655441100 01122344566777778888776544 334567788999
Q ss_pred HhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc--
Q psy2392 778 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV-- 855 (1165)
Q Consensus 778 ~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~-- 855 (1165)
.|.+.|+||+++++.+..++... +.|+..+.+| .+++||+||||||||++|+++|+.++.+|++++|+++.+.
T Consensus 455 ~l~~~v~g~~~~~~~l~~~i~~~--~~g~~~~~~p---~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~ 529 (758)
T 1r6b_X 455 RLKMLVFGQDKAIEALTEAIKMA--RAGLGHEHKP---VGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT 529 (758)
T ss_dssp HHTTTSCSCHHHHHHHHHHHHHH--HTTCSCTTSC---SEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred HHHhhccCHHHHHHHHHHHHHHH--hcccCCCCCC---ceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhh
Confidence 99999999999999999988755 6676655444 4789999999999999999999999999999999998763
Q ss_pred ---------cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHH
Q psy2392 856 ---------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQI 926 (1165)
Q Consensus 856 ---------GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~ 926 (1165)
||+|++.++.+.+.
T Consensus 530 ~~~l~g~~~g~~g~~~~~~l~~~--------------------------------------------------------- 552 (758)
T 1r6b_X 530 VSRLIGAPPGYVGFDQGGLLTDA--------------------------------------------------------- 552 (758)
T ss_dssp CSSSCCCCSCSHHHHHTTHHHHH---------------------------------------------------------
T ss_pred HhhhcCCCCCCcCccccchHHHH---------------------------------------------------------
Confidence 34443322221111
Q ss_pred HHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDE 1006 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~ 1006 (1165)
T Consensus 553 -------------------------------------------------------------------------------- 552 (758)
T 1r6b_X 553 -------------------------------------------------------------------------------- 552 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCCC--
Q psy2392 1007 IQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAK-- 1083 (1165)
Q Consensus 1007 ~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~~-- 1083 (1165)
+.. ...+|+||||||++... +|+.||.++|...++...| .++..|+.||++.+.....
T Consensus 553 -----~~~-~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~ 613 (758)
T 1r6b_X 553 -----VIK-HPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 613 (758)
T ss_dssp -----HHH-CSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC---
T ss_pred -----HHh-CCCcEEEEeCccccCHH-------------HHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhh
Confidence 111 15789999999998654 9999999999766554323 4566788899886532100
Q ss_pred ----------C---------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHH
Q psy2392 1084 ----------P---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQR 1144 (1165)
Q Consensus 1084 ----------p---------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ 1144 (1165)
+ ..|.|+|++||+.+|.|+||+.+++.+|++ ..+.++...+...++.+.|+++++++
T Consensus 614 ~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~a~~~ 689 (758)
T 1r6b_X 614 RKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQVQLDQKGVSLEVSQEARNW 689 (758)
T ss_dssp --------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHHHHHHHHHHHTTEEEEECHHHHHH
T ss_pred hcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHH----HHHHHHHHHHHHCCcEEEeCHHHHHH
Confidence 0 057899999999999999999999999999 66777777788889999999999999
Q ss_pred HHHHHhccCcCC
Q psy2392 1145 LAEIAYCINERT 1156 (1165)
Q Consensus 1145 ia~~a~~~~~~~ 1156 (1165)
|++.++..|.++
T Consensus 690 l~~~~~~~~~g~ 701 (758)
T 1r6b_X 690 LAEKGYDRAMGA 701 (758)
T ss_dssp HHHHHCBTTTBT
T ss_pred HHHhCCCcCCCc
Confidence 999999984443
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=415.90 Aligned_cols=361 Identities=21% Similarity=0.310 Sum_probs=261.4
Q ss_pred cCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHH
Q psy2392 626 RGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKEW 700 (1165)
Q Consensus 626 RG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ry 700 (1165)
+|+++||||||..+|+++++.|+|+.|| |+ .|. +.+|+.++...||+++...|+.||+ +++.+++.++.+|
T Consensus 289 ~~~v~~I~at~~~~~~~~~~~d~al~rR--f~-~i~-v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~ 364 (758)
T 3pxi_A 289 RGELQCIGATTLDEYRKYIEKDAALERR--FQ-PIQ-VDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (758)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHHS--EE-EEE-CCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred cCCEEEEeCCChHHHHHHhhccHHHHhh--Cc-EEE-eCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 4567899999999999999999999999 98 554 9999999999999999999999998 8999999999999
Q ss_pred hcccccchH--HHHhhhhhhhhhhhhcCCCCccCccccccc---------------------------------------
Q psy2392 701 RNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGA--------------------------------------- 739 (1165)
Q Consensus 701 i~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~i~~--------------------------------------- 739 (1165)
++++++|++ ++++.+++.......+.+......+..+..
T Consensus 365 i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 444 (758)
T 3pxi_A 365 ISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWK 444 (758)
T ss_dssp SCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred cccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 457777776654322211111111110000
Q ss_pred ----cccccccHHHHHHHhhhccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCC
Q psy2392 740 ----IGSGGIFAQSAAKALQENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEI 814 (1165)
Q Consensus 740 ----i~~~~~~~~~~a~~l~~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~ 814 (1165)
.....+....++..+..+++++...+.. +......+...|.+.|+||+.+++.+..++... +.++..+.+|
T Consensus 445 ~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~--~~~~~~~~~p-- 520 (758)
T 3pxi_A 445 EKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA--RAGLKDPKRP-- 520 (758)
T ss_dssp HHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH--TTTCSCTTSC--
T ss_pred HhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH--HcccCCCCCC--
Confidence 0112233345677777788776665532 344556788889999999999999999999865 5555544433
Q ss_pred CCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHH
Q psy2392 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAED 891 (1165)
Q Consensus 815 ~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~ 891 (1165)
.+++||+||||||||++|+++|+.+ +.+|+.+||+++.+. +... ++.+.+
T Consensus 521 -~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~----------------------- 573 (758)
T 3pxi_A 521 -IGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTE----------------------- 573 (758)
T ss_dssp -SEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHH-----------------------
T ss_pred -ceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhH-----------------------
Confidence 3689999999999999999999998 689999999998765 2221 011111
Q ss_pred HHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHH
Q psy2392 892 AAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMF 971 (1165)
Q Consensus 892 ~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1165)
T Consensus 574 -------------------------------------------------------------------------------- 573 (758)
T 3pxi_A 574 -------------------------------------------------------------------------------- 573 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcc
Q psy2392 972 SVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLL 1051 (1165)
Q Consensus 972 ~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL 1051 (1165)
++.. ...+|+||||||++... +|..||
T Consensus 574 ---------------------------------------~~~~-~~~~vl~lDEi~~~~~~-------------~~~~Ll 600 (758)
T 3pxi_A 574 ---------------------------------------KVRR-KPYSVVLLDAIEKAHPD-------------VFNILL 600 (758)
T ss_dssp ---------------------------------------HHHH-CSSSEEEEECGGGSCHH-------------HHHHHH
T ss_pred ---------------------------------------HHHh-CCCeEEEEeCccccCHH-------------HHHHHH
Confidence 0000 15689999999998654 999999
Q ss_pred ccccCccceeeee-eccCceEEEEecCCCCCCCC--------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHH
Q psy2392 1052 PLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKP--------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK 1122 (1165)
Q Consensus 1052 ~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~~p--------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~ 1122 (1165)
.++|.+.+..-.| .++..|+.||+++....... ..|.|+|.+||+..|.|.||+.+++.+|+. ..+.
T Consensus 601 ~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~----~~l~ 676 (758)
T 3pxi_A 601 QVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVS----LMSD 676 (758)
T ss_dssp HHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHH----HHHH
T ss_pred HHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHH----HHHH
Confidence 9999866544222 45667888888875321110 018899999999999999999999999999 5667
Q ss_pred HHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCce
Q psy2392 1123 QYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN 1158 (1165)
Q Consensus 1123 q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~n 1158 (1165)
++...+...++.+.|+++++++|++.+|+...+++.
T Consensus 677 ~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~ 712 (758)
T 3pxi_A 677 QLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARP 712 (758)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTT
T ss_pred HHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChH
Confidence 777777777999999999999999999988655543
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-40 Score=414.65 Aligned_cols=380 Identities=20% Similarity=0.336 Sum_probs=307.2
Q ss_pred ccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHH
Q psy2392 9 SAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEK 86 (1165)
Q Consensus 9 ~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~ 86 (1165)
+++....+.+++.|+| .|++|+++|||+||+.+|+++++.|++|.|| |+ .| .|++|+.+++..||+++...|+.
T Consensus 292 ~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~~~~~~~~~~d~aL~~R--f~-~i-~v~~p~~~e~~~il~~l~~~~~~ 367 (758)
T 1r6b_X 292 GAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KI-DITEPSIEETVQIINGLKPKYEA 367 (758)
T ss_dssp TSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGG--EE-EE-ECCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCchHHhhhhhcCHHHHhC--ce-EE-EcCCCCHHHHHHHHHHHHHHHHH
Confidence 3443334567788888 8999999999999999999999999999999 99 55 59999999999999999999999
Q ss_pred Hhh-----HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCcccccccccccchhhHHHHHHhhhc
Q psy2392 87 HQG-----NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQEN 159 (1165)
Q Consensus 87 ~h~-----~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~va~~l~~~ 159 (1165)
+|+ +++.+++.++.+|++++++||+ ++++++|+..+.. +.. . ....+....+++++..|
T Consensus 368 ~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~----~~~-----~-----~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 368 HHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM----PVS-----K-----RKKTVNVADIESVVARI 433 (758)
T ss_dssp HHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHS----SSC-----C-----CCCSCCHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcc----ccc-----c-----cCCccCHHHHHHHHHHh
Confidence 998 9999999999999999999996 5688888777652 100 0 00112233667778888
Q ss_pred cccCchhhhhh-hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHH
Q psy2392 160 TELMPDEIIKK-SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRL 238 (1165)
Q Consensus 160 t~l~~~~i~~~-~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~l 238 (1165)
+++|+..+..+ ...+..+.+.|.+.|+||+++++.+..++... +.|+.++.+|. +++||+||||||||++|+++
T Consensus 434 ~~ip~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~--~~g~~~~~~p~---~~~ll~G~~GtGKT~la~~l 508 (758)
T 1r6b_X 434 ARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA--RAGLGHEHKPV---GSFLFAGPTGVGKTEVTVQL 508 (758)
T ss_dssp SCCCCCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH--HTTCSCTTSCS---EEEEEECSTTSSHHHHHHHH
T ss_pred cCCCccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHH--hcccCCCCCCc---eEEEEECCCCCcHHHHHHHH
Confidence 99998776543 36788899999999999999999999998765 67777666554 79999999999999999999
Q ss_pred HHHhCCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy2392 239 AKLSNAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSK 307 (1165)
Q Consensus 239 A~~l~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (1165)
|+.++.+|++++|+++.+ +||+|++.++.+.+.+
T Consensus 509 a~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~----------------------------------- 553 (758)
T 1r6b_X 509 SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV----------------------------------- 553 (758)
T ss_dssp HHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHH-----------------------------------
T ss_pred HHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHH-----------------------------------
Confidence 999999999999999865 3555554333222222
Q ss_pred cCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceee
Q psy2392 308 EKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387 (1165)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1165)
T Consensus 554 -------------------------------------------------------------------------------- 553 (758)
T 1r6b_X 554 -------------------------------------------------------------------------------- 553 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-
Q psy2392 388 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG- 466 (1165)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~- 466 (1165)
.. .+++||||||||++++. +|+.||+++|.+.++...|
T Consensus 554 ---------------------------~~-~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 554 ---------------------------IK-HPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp ---------------------------HH-CSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTTE
T ss_pred ---------------------------Hh-CCCcEEEEeCccccCHH-------------HHHHHHHHhcCcEEEcCCCC
Confidence 11 26899999999999765 8889999999776654333
Q ss_pred eecCceEEEEEeCCcccCC------------C---------CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHH
Q psy2392 467 IIKTDHILFIASGAFHLAK------------P---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQ 525 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~~~------------p---------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~ 525 (1165)
.++..|++||++++..... + ..|.|+|++||+.+|.|++|+.+++.+|+ ...+.+
T Consensus 593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~----~~~l~~ 668 (758)
T 1r6b_X 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVE 668 (758)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH----HHHHHH
T ss_pred EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHH----HHHHHH
Confidence 5677899999986532100 0 15889999999999999999999999999 456666
Q ss_pred HHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 526 YEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 526 ~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
....+...++.+.++++++++|++.++. .++|||.|+++|++.+..
T Consensus 669 ~~~~~~~~~~~~~~~~~a~~~l~~~~~~-----~~~g~R~l~~~i~~~~~~ 714 (758)
T 1r6b_X 669 LQVQLDQKGVSLEVSQEARNWLAEKGYD-----RAMGARPMARVIQDNLKK 714 (758)
T ss_dssp HHHHHHHTTEEEEECHHHHHHHHHHHCB-----TTTBTTTHHHHHHHHHTH
T ss_pred HHHHHHHCCcEEEeCHHHHHHHHHhCCC-----cCCCchHHHHHHHHHHHH
Confidence 7777778889999999999999999987 589999999999998875
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=412.11 Aligned_cols=387 Identities=22% Similarity=0.328 Sum_probs=284.7
Q ss_pred cccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh----
Q psy2392 16 EKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG---- 89 (1165)
Q Consensus 16 ~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~---- 89 (1165)
+.+|+.|+| +|++|+++||||||+.+|+++++.|+||.|| |+ . +.|++|+.++...||+++..+|+.||+
T Consensus 275 ~~~~~~~~L~~~l~~~~v~~I~at~~~~~~~~~~~d~al~rR--f~-~-i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~ 350 (758)
T 3pxi_A 275 AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR--FQ-P-IQVDQPSVDESIQILQGLRDRYEAHHRVSIT 350 (758)
T ss_dssp C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS--EE-E-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCC
T ss_pred CchhHHHHHHHHHhcCCEEEEeCCChHHHHHHhhccHHHHhh--Cc-E-EEeCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 456888888 9999999999999999999999999999999 99 4 559999999999999999999999998
Q ss_pred -HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCccccccccc-----------------------
Q psy2392 90 -NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGAIG----------------------- 143 (1165)
Q Consensus 90 -~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~~~~~~~----------------------- 143 (1165)
+++.+++.+|++|++++++||+ ++++.||+..+....+.+.....+++.+.++.
T Consensus 351 ~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 430 (758)
T 3pxi_A 351 DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQ 430 (758)
T ss_dssp HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999999999999999997 45899999887653332322222222211110
Q ss_pred --------------------ccchhhHHHHHHhhhccccCchhhhhhh-hHHHHHHHHhcccEecchhhHHHHHHHHHhh
Q psy2392 144 --------------------SGGIFAQSAAKALQENTELMPDEIIKKS-LVIAEIVSELDKYVIGQNRAKRAVAIALRNR 202 (1165)
Q Consensus 144 --------------------~~~~~~~~va~~l~~~t~l~~~~i~~~~-~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~ 202 (1165)
...+....++..+.+|+++|+..+..+. .....+...|.+.|+||+.+++.+..++...
T Consensus 431 ~~~~~l~~~~~~~~~~~~~~~~~v~~~~i~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~ 510 (758)
T 3pxi_A 431 RLREQVEDTKKSWKEKQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRA 510 (758)
T ss_dssp HHHHHHHHHHSGGGHHHHCC---CCTHHHHHHHHTTC-------CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCcccCHHHHHHHHHHHhCCChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHH
Confidence 0112223566778888998887766543 4556788899999999999999999999865
Q ss_pred hhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccccccccccccchhhHHHHHHHHHhhhh
Q psy2392 203 WRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQT 279 (1165)
Q Consensus 203 ~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~ 279 (1165)
+.++..+.+|. +++||+||||||||++|+++|+.+ +.+|+++||++|.+. +... ++.+.+
T Consensus 511 --~~~~~~~~~p~---~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~-~~~~--~~~l~~--------- 573 (758)
T 3pxi_A 511 --RAGLKDPKRPI---GSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK-HSTS--GGQLTE--------- 573 (758)
T ss_dssp --TTTCSCTTSCS---EEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS-CCCC-----CHH---------
T ss_pred --HcccCCCCCCc---eEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc-cccc--cchhhH---------
Confidence 55665555443 689999999999999999999998 689999999998754 2221 011111
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCC
Q psy2392 280 REFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSP 359 (1165)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~ 359 (1165)
T Consensus 574 -------------------------------------------------------------------------------- 573 (758)
T 3pxi_A 574 -------------------------------------------------------------------------------- 573 (758)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCC
Q psy2392 360 PGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN 439 (1165)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~ 439 (1165)
++.. .+++||||||||++++.
T Consensus 574 -----------------------------------------------------~~~~-~~~~vl~lDEi~~~~~~----- 594 (758)
T 3pxi_A 574 -----------------------------------------------------KVRR-KPYSVVLLDAIEKAHPD----- 594 (758)
T ss_dssp -----------------------------------------------------HHHH-CSSSEEEEECGGGSCHH-----
T ss_pred -----------------------------------------------------HHHh-CCCeEEEEeCccccCHH-----
Confidence 1111 26789999999999765
Q ss_pred CCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCcccCC--------CCCCchhhhCCCCeeEecCCCCHHH
Q psy2392 440 NTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAK--------PSDLIPELQGRFPIRVELDSLSISD 510 (1165)
Q Consensus 440 ~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~~~--------p~~l~pel~~R~~~~v~~~~L~~~~ 510 (1165)
+|+.||+++|.+.++...| .++..|+.||+|++..... ...|.|+|++||+..|.|.||+.++
T Consensus 595 --------~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~ 666 (758)
T 3pxi_A 595 --------VFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKH 666 (758)
T ss_dssp --------HHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHH
T ss_pred --------HHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHH
Confidence 8889999999766654332 4567788899886532111 0118999999999999999999999
Q ss_pred HHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 511 FTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 511 l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
+.+|+. ..+.++...+...++.+.++++++++|++.+|+. .+|||.|+++|++.+.....
T Consensus 667 ~~~i~~----~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~-----~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 667 LTEIVS----LMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL-----EYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp HHHHHH----HHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT-----TTTTTTHHHHHHHHTHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC-----CCCChHHHHHHHHHHHHHHH
Confidence 999994 5566666667777999999999999999999884 79999999999998776543
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=410.50 Aligned_cols=368 Identities=23% Similarity=0.332 Sum_probs=262.1
Q ss_pred cCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHH
Q psy2392 626 RGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKEW 700 (1165)
Q Consensus 626 RG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ry 700 (1165)
+|.++|||+||..+|++ ++.|+++.|| |+ .|. +.+|+.+++..||+++...|+.||+ +++.++++++.+|
T Consensus 297 ~~~i~~I~at~~~~~~~-~~~d~aL~rR--f~-~i~-l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~ 371 (854)
T 1qvr_A 297 RGELRLIGATTLDEYRE-IEKDPALERR--FQ-PVY-VDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 (854)
T ss_dssp TTCCCEEEEECHHHHHH-HTTCTTTCSC--CC-CEE-ECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCchHHhh-hccCHHHHhC--Cc-eEE-eCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhh
Confidence 34577899999999999 9999999999 99 555 9999999999999999999999998 9999999999999
Q ss_pred hcccccchH--HHHhhhhhhhhhhhhcCCCCccCcccc------------------------------------------
Q psy2392 701 RNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENG------------------------------------------ 736 (1165)
Q Consensus 701 i~~R~lPDk--dlid~a~a~~~~~~~s~~~~~~~~~~~------------------------------------------ 736 (1165)
+++|++|++ ++++++++..+....+.+.........
T Consensus 372 i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (854)
T 1qvr_A 372 ITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRA 451 (854)
T ss_dssp CCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999996 457777766554211000000000000
Q ss_pred ----------------------------------------------------cc---------ccccccccHHHHHHHhh
Q psy2392 737 ----------------------------------------------------IG---------AIGSGGIFAQSAAKALQ 755 (1165)
Q Consensus 737 ----------------------------------------------------i~---------~i~~~~~~~~~~a~~l~ 755 (1165)
+. ..-...+....++..+.
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~v~ 531 (854)
T 1qvr_A 452 EWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFVRLEVTEEDIAEIVS 531 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSCCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccccCCcCHHHHHHHHH
Confidence 00 00012233445666677
Q ss_pred hccCCChHHHHH-hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHH
Q psy2392 756 ENTELMPDEIIK-KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIAR 834 (1165)
Q Consensus 756 ~~t~~~~~~i~~-~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk 834 (1165)
.|++++...+.. +..+...+.+.+++.|+||+.+++.+..++... +.|+.++.+| ..++||+||||||||++|+
T Consensus 532 ~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--~~g~~~~~~p---~~~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 532 RWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRP---IGSFLFLGPTGVGKTELAK 606 (854)
T ss_dssp TTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--GGGCSCSSSC---SEEEEEBSCSSSSHHHHHH
T ss_pred HHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--hcccCCCCCC---ceEEEEECCCCCCHHHHHH
Confidence 777765544422 333455677788899999999999999998765 5666655443 4799999999999999999
Q ss_pred HHHHHc---CCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCc
Q psy2392 835 RLAKLS---NAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLD 911 (1165)
Q Consensus 835 ~lA~~l---~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~ 911 (1165)
++++.+ +.+|+.++|+++.+... +.++|+.. +
T Consensus 607 ~la~~~~~~~~~~i~i~~~~~~~~~~--------~s~l~g~~-------------------------------------~ 641 (854)
T 1qvr_A 607 TLAATLFDTEEAMIRIDMTEYMEKHA--------VSRLIGAP-------------------------------------P 641 (854)
T ss_dssp HHHHHHHSSGGGEEEECTTTCCSSGG--------GGGC------------------------------------------
T ss_pred HHHHHhcCCCCcEEEEechhccchhH--------HHHHcCCC-------------------------------------C
Confidence 999999 78999999999865411 11111000 0
Q ss_pred cccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHH
Q psy2392 912 TDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIK 991 (1165)
Q Consensus 912 ~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~ 991 (1165)
++. |.++ .
T Consensus 642 -~~~-------------------------------------------G~~~------------------~---------- 649 (854)
T 1qvr_A 642 -GYV-------------------------------------------GYEE------------------G---------- 649 (854)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CCc-------------------------------------------Cccc------------------c----------
Confidence 000 0000 0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCce
Q psy2392 992 LLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDH 1070 (1165)
Q Consensus 992 ~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ 1070 (1165)
..+ ..++.. ...+++||||||++... +|+.||.++|...++...| .++..|
T Consensus 650 -------------g~l-~~~~~~-~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 650 -------------GQL-TEAVRR-RPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLTDSHGRTVDFRN 701 (854)
T ss_dssp --------------CH-HHHHHH-CSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred -------------chH-HHHHHh-CCCeEEEEecccccCHH-------------HHHHHHHHhccCceECCCCCEeccCC
Confidence 000 011111 24689999999998654 9999999999766543222 566788
Q ss_pred EEEEecCCCCC----C------------------CCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHH
Q psy2392 1071 ILFIASGAFHL----A------------------KPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALL 1128 (1165)
Q Consensus 1071 ilfI~~gaf~~----~------------------~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~ 1128 (1165)
+++|+++.... . ....|.|+|.+||+..+.|.||+.+++..|+. ..+.++...+
T Consensus 702 ~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~----~~l~~~~~~~ 777 (854)
T 1qvr_A 702 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQLSYLRARL 777 (854)
T ss_dssp EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHH----HHHHHHHHHH
T ss_pred eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHH----HHHHHHHHHH
Confidence 89999876410 0 12357899999999999999999999999999 6677777777
Q ss_pred hhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1129 ATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1129 ~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
...++.+.|+++|+++|+..+++.
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~ 801 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDP 801 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBT
T ss_pred HhCCceEEECHHHHHHHHHcCCCC
Confidence 777889999999999999999954
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=406.88 Aligned_cols=450 Identities=19% Similarity=0.301 Sum_probs=296.8
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|.|.+++++.|.+.+..+++++.+....+.. +|+++||+||||||||++|+++|++++.+|+.++++++.+. |+|.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~-~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk-~~ge 281 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 281 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCC-CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSS-CTTH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCC-CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcc-cchH
Confidence 589999999999999999888888877765533 46899999999999999999999999999999999999875 8887
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|..+
T Consensus 282 s-e~~lr~lF~~A------------------------------------------------------------------- 293 (806)
T 3cf2_A 282 S-ESNLRKAFEEA------------------------------------------------------------------- 293 (806)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 7 55577777663
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 294 -----------------------------------------------------------------------~~--~~PsI 300 (806)
T 3cf2_A 294 -----------------------------------------------------------------------EK--NAPAI 300 (806)
T ss_dssp -----------------------------------------------------------------------TT--SCSEE
T ss_pred -----------------------------------------------------------------------HH--cCCeE
Confidence 00 15899
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~ 500 (1165)
|||||||.|++++++. ..+.+ ..+...||..|+|-. ...++++|+++ ++|..+.|+|++ ||+..
T Consensus 301 IfIDEiDal~~~r~~~-~~~~~-~riv~~LL~~mdg~~--------~~~~V~VIaaT----N~~d~LD~ALrR~GRFd~~ 366 (806)
T 3cf2_A 301 IFIDELDAIAPKREKT-HGEVE-RRIVSQLLTLMDGLK--------QRAHVIVMAAT----NRPNSIDPALRRFGRFDRE 366 (806)
T ss_dssp EEEESGGGTCCTTTTC-CCTTH-HHHHHHHHTHHHHCC--------GGGCEEEEEEC----SSTTTSCTTTTSTTSSCEE
T ss_pred EEEehhcccccccCCC-CChHH-HHHHHHHHHHHhccc--------ccCCEEEEEec----CChhhcCHHHhCCcccceE
Confidence 9999999999887652 22333 345567888888732 34578889884 689999999986 99999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcc
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~ 580 (1165)
|++..++.++..+||+ . ...++.+. ++-.++.||..+.. +-+.-|..++.......
T Consensus 367 I~i~~Pd~~~R~~IL~----~---------~l~~~~~~-~dvdl~~lA~~T~G-------fsgaDL~~Lv~eA~~~A--- 422 (806)
T 3cf2_A 367 VDIGIPDATGRLEILQ----I---------HTKNMKLA-DDVDLEQVANETHG-------HVGADLAALCSEAALQA--- 422 (806)
T ss_dssp EECCCCCHHHHHHHHH----H---------TCSSSEEC-TTCCHHHHHHHCCS-------CCHHHHHHHHHHHHHHH---
T ss_pred EecCCCCHHHHHHHHH----H---------HhcCCCCC-cccCHHHHHHhcCC-------CCHHHHHHHHHHHHHHH---
Confidence 9999999999999994 1 12233322 22235566655532 33333444433321110
Q ss_pred cCCCeeEEcccccccccccCcccccccccccccccccCcceeeeecCCcccccCCccccccccccCcchHHHHhhhhccc
Q psy2392 581 SNNISLLVDADYVNSRLGDLSINEDLSRYDSGMEKFQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQV 660 (1165)
Q Consensus 581 ~~~~~~~i~~~~v~~~~~~~~~~~dls~~i~~~~~~~gt~~~aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~V 660 (1165)
..|. .. .+
T Consensus 423 ---------------------------------------------------------------------~~r~--~~-~i 430 (806)
T 3cf2_A 423 ---------------------------------------------------------------------IRKK--MD-LI 430 (806)
T ss_dssp ---------------------------------------------------------------------HHHH--HH-HG
T ss_pred ---------------------------------------------------------------------HHhc--cc-cc
Confidence 0000 00 00
Q ss_pred ccccCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccchHHHHhhhhhhhhhhhhcCCCCccCcccccccc
Q psy2392 661 LAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIGAI 740 (1165)
Q Consensus 661 i~v~EPs~edT~~IL~glk~~yE~~h~~aL~aav~LS~ryi~~R~lPDkdlid~a~a~~~~~~~s~~~~~~~~~~~i~~i 740 (1165)
....+....+ .+. ...+-..|. ..+... +.+.. .
T Consensus 431 ~~~~~~~~~e------------------~~~-----------~~~v~~~Df------~~Al~~-------~~ps~----~ 464 (806)
T 3cf2_A 431 DLEDETIDAE------------------VMN-----------SLAVTMDDF------RWALSQ-------SNPSA----L 464 (806)
T ss_dssp GGTCCCCSHH------------------HHH-----------HCEECTTHH------HHHHSS-------SSCCC----C
T ss_pred cccccccchh------------------hhc-----------cceeeHHHH------HHHHHh-------CCCcc----c
Confidence 0000000000 000 000000000 000000 00000 0
Q ss_pred ccccccHHHHHHHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEE
Q psy2392 741 GSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNIL 820 (1165)
Q Consensus 741 ~~~~~~~~~~a~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iL 820 (1165)
.+... +....-|++|.|++++++.|.+.+.++++...+..... ..+++++|
T Consensus 465 --r~~~~--------------------------~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvL 515 (806)
T 3cf2_A 465 --RETVV--------------------------EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVL 515 (806)
T ss_dssp --CCCCC--------------------------BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCE
T ss_pred --ccccc--------------------------cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEE
Confidence 00000 00112357899999999999999987665554443322 12368999
Q ss_pred EEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHh
Q psy2392 821 MIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDI 900 (1165)
Q Consensus 821 L~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ 900 (1165)
||||||||||++|+++|++++.+|+.++++++.++ |+|++ +..++++|..|+..
T Consensus 516 l~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~-~vGes-e~~vr~lF~~Ar~~------------------------ 569 (806)
T 3cf2_A 516 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFGES-EANVREIFDKARQA------------------------ 569 (806)
T ss_dssp EESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT-TCSSC-HHHHHHHHHHHHTT------------------------
T ss_pred EecCCCCCchHHHHHHHHHhCCceEEeccchhhcc-ccchH-HHHHHHHHHHHHHc------------------------
Confidence 99999999999999999999999999999999998 99999 46799998877222
Q ss_pred hcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCcc
Q psy2392 901 LVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKK 980 (1165)
Q Consensus 901 ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 980 (1165)
T Consensus 570 -------------------------------------------------------------------------------- 569 (806)
T 3cf2_A 570 -------------------------------------------------------------------------------- 569 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccc
Q psy2392 981 TRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTV 1059 (1165)
Q Consensus 981 ~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v 1059 (1165)
.++||||||||.|+..++...+ ......-+-..||..|+|-.
T Consensus 570 ------------------------------------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~- 612 (806)
T 3cf2_A 570 ------------------------------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS- 612 (806)
T ss_dssp ------------------------------------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-
T ss_pred ------------------------------------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-
Confidence 5789999999999987653221 11122236678999999732
Q ss_pred eeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1060 NTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1060 ~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
..+++++|+++ +.|+.|.|+|++ ||..+++++.++.++..+||+
T Consensus 613 -------~~~~V~vi~aT----N~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~ 658 (806)
T 3cf2_A 613 -------TKKNVFIIGAT----NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp -------SSSSEEEECC-----CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTT
T ss_pred -------CCCCEEEEEeC----CCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHH
Confidence 34568888876 589999999986 999999999999999999998
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=402.13 Aligned_cols=388 Identities=23% Similarity=0.322 Sum_probs=289.3
Q ss_pred cccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh----
Q psy2392 16 EKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG---- 89 (1165)
Q Consensus 16 ~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~---- 89 (1165)
+.+++.|+| .|++|+++||||||+.+|++ ++.|++|.|| |+ .| .|++|+.+++..||+++..+|+.||+
T Consensus 283 g~~~~~~~L~~~l~~~~i~~I~at~~~~~~~-~~~d~aL~rR--f~-~i-~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~ 357 (854)
T 1qvr_A 283 GAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERR--FQ-PV-YVDEPTVEETISILRGLKEKYEVHHGVRIS 357 (854)
T ss_dssp ---------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSC--CC-CE-EECCCCHHHHHHHHHHHHHHHHHHTTCEEC
T ss_pred chHHHHHHHHHHHhCCCeEEEEecCchHHhh-hccCHHHHhC--Cc-eE-EeCCCCHHHHHHHHHhhhhhhhhhcCCCCC
Confidence 357888888 89999999999999999999 9999999999 99 55 59999999999999999999999998
Q ss_pred -HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCccccccc-------------------------
Q psy2392 90 -NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGA------------------------- 141 (1165)
Q Consensus 90 -~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~~~~~------------------------- 141 (1165)
+++.+++.+|.+|+++|++||+ +++|++|+..+....+.|.....+++.+.+
T Consensus 358 ~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (854)
T 1qvr_A 358 DSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEA 437 (854)
T ss_dssp HHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHH
T ss_pred HHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 9999999999999999999997 458999988876422111100000000000
Q ss_pred ---------------------------------------------------------------------c---------c
Q psy2392 142 ---------------------------------------------------------------------I---------G 143 (1165)
Q Consensus 142 ---------------------------------------------------------------------~---------~ 143 (1165)
. -
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (854)
T 1qvr_A 438 EIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARFV 517 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHHSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhhhcccccc
Confidence 0 0
Q ss_pred ccchhhHHHHHHhhhccccCchhhhhh-hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEE
Q psy2392 144 SGGIFAQSAAKALQENTELMPDEIIKK-SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNIL 222 (1165)
Q Consensus 144 ~~~~~~~~va~~l~~~t~l~~~~i~~~-~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~L 222 (1165)
.+.+....++..++.|+++|...+... ...+..+.+.|.+.|+||+.+++.+..++... +.|+.++.+|. +++|
T Consensus 518 ~~~v~~~~l~~~v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~--~~g~~~~~~p~---~~vL 592 (854)
T 1qvr_A 518 RLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRPI---GSFL 592 (854)
T ss_dssp CSEECHHHHHHHHHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--GGGCSCSSSCS---EEEE
T ss_pred cCCcCHHHHHHHHHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH--hcccCCCCCCc---eEEE
Confidence 011112345666777888877766443 34556677888889999999999999999865 66776665554 7999
Q ss_pred EEcCCCCCchHHHHHHHHHh---CCCceEEeccccccc-----------cccccchhhHHHHHHHHHhhhhhhHHHHHHH
Q psy2392 223 MIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFTEV-----------GYVGRDVDTIIRDLIDISIKQTREFEINKVR 288 (1165)
Q Consensus 223 l~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~~~-----------GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~ 288 (1165)
|+||||||||++|++|++.+ +.+|+.++|+++.+. ||+|+...+.+.
T Consensus 593 l~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~------------------- 653 (854)
T 1qvr_A 593 FLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLT------------------- 653 (854)
T ss_dssp EBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHH-------------------
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHH-------------------
Confidence 99999999999999999999 789999999987652 222222111110
Q ss_pred hHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHH
Q psy2392 289 TRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQ 368 (1165)
Q Consensus 289 ~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1165)
T Consensus 654 -------------------------------------------------------------------------------- 653 (854)
T 1qvr_A 654 -------------------------------------------------------------------------------- 653 (854)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhh
Q psy2392 369 IKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGV 448 (1165)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~v 448 (1165)
.++.. .+++||||||||++++. +
T Consensus 654 -------------------------------------------~~~~~-~~~~vl~lDEi~~l~~~-------------~ 676 (854)
T 1qvr_A 654 -------------------------------------------EAVRR-RPYSVILFDEIEKAHPD-------------V 676 (854)
T ss_dssp -------------------------------------------HHHHH-CSSEEEEESSGGGSCHH-------------H
T ss_pred -------------------------------------------HHHHh-CCCeEEEEecccccCHH-------------H
Confidence 11222 26789999999998765 8
Q ss_pred hhhhcccccCceeeeec-eeecCceEEEEEeCCccc----C------------------CCCCCchhhhCCCCeeEecCC
Q psy2392 449 QRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL----A------------------KPSDLIPELQGRFPIRVELDS 505 (1165)
Q Consensus 449 q~~lL~~~Eg~~v~~~~-~~~~t~~ilfI~~gaf~~----~------------------~p~~l~pel~~R~~~~v~~~~ 505 (1165)
|+.||+++|.+.++... ..++..|+++|++++... . ....|.|+|.+||+.++.|.|
T Consensus 677 ~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~p 756 (854)
T 1qvr_A 677 FNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRP 756 (854)
T ss_dssp HHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCC
T ss_pred HHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCC
Confidence 88999999977665432 367788999999876410 0 123589999999999999999
Q ss_pred CCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 506 LSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 506 L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
|+.+++..|+ ...+.++...+...++.+.|+++++++|++.+++ +.+|||.|+++|++.+....
T Consensus 757 l~~edi~~i~----~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~-----~~gn~R~L~~~i~~~~~~~~ 820 (854)
T 1qvr_A 757 LTKEQIRQIV----EIQLSYLRARLAEKRISLELTEAAKDFLAERGYD-----PVFGARPLRRVIQRELETPL 820 (854)
T ss_dssp CCHHHHHHHH----HHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCB-----TTTBTSTHHHHHHHHTHHHH
T ss_pred CCHHHHHHHH----HHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCC-----CCCChHHHHHHHHHHHHHHH
Confidence 9999999999 4566666777777788999999999999999986 36899999999999876543
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-32 Score=311.28 Aligned_cols=290 Identities=38% Similarity=0.639 Sum_probs=233.4
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCC-CCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~-~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.+|.++.+.|++.|+||+.+++.+..++..+|++...... .+....+.++||+||||||||++|+++|+.++.+|+.++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 4 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4678899999999999999999999999877665433221 111223579999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHH
Q psy2392 251 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 330 (1165)
Q Consensus 251 ~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1165)
++++..+||+|+...+.++.++..+.
T Consensus 84 ~~~l~~~~~~g~~~~~~~~~~~~~~~------------------------------------------------------ 109 (363)
T 3hws_A 84 ATTLTEAGYVGEDVENIIQKLLQKCD------------------------------------------------------ 109 (363)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHHHHTT------------------------------------------------------
T ss_pred hHHhcccccccccHHHHHHHHHHHhh------------------------------------------------------
Confidence 99998888999876666666665510
Q ss_pred HHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHH
Q psy2392 331 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 410 (1165)
Q Consensus 331 ~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1165)
|.
T Consensus 110 -----~~------------------------------------------------------------------------- 111 (363)
T 3hws_A 110 -----YD------------------------------------------------------------------------- 111 (363)
T ss_dssp -----TC-------------------------------------------------------------------------
T ss_pred -----hh-------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHhhhccceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeee-----------eceeecCceEEEEEe
Q psy2392 411 QKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFIAS 478 (1165)
Q Consensus 411 ~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~-----------~~~~~~t~~ilfI~~ 478 (1165)
+.. .+++||||||||++.+.+.+.+ +.+.+++++|+.||++|||..+.. ....+.|.|++||++
T Consensus 112 ---~~~-~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~ 187 (363)
T 3hws_A 112 ---VQK-AQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 187 (363)
T ss_dssp ---HHH-HHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEE
T ss_pred ---HHh-cCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEec
Confidence 000 1478999999999998765533 567788889999999999764332 134779999999999
Q ss_pred CCcc---------cCC---------------------------CCC-----CchhhhCCCCeeEecCCCCHHHHHHHHhh
Q psy2392 479 GAFH---------LAK---------------------------PSD-----LIPELQGRFPIRVELDSLSISDFTRIMTS 517 (1165)
Q Consensus 479 gaf~---------~~~---------------------------p~~-----l~pel~~R~~~~v~~~~L~~~~l~~Il~~ 517 (1165)
|+|. ..+ |.+ |.|+|++||++++.|.||+.+++.+|+..
T Consensus 188 g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 188 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 9984 111 112 89999999999999999999999999976
Q ss_pred hhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe----eEEccccc
Q psy2392 518 TNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS----LLVDADYV 593 (1165)
Q Consensus 518 ~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~----~~i~~~~v 593 (1165)
..+.++.++.+.+...++.+.++++++++|++.+|. .++|||.|+++|++++.+..++.|... +.||.++|
T Consensus 268 ~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~-----~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v 342 (363)
T 3hws_A 268 PKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA-----RKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVI 342 (363)
T ss_dssp STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH-----TTCTTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHT
T ss_pred HHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcC-----CccCchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHH
Confidence 556688899999988999999999999999999998 489999999999999999999998763 79999999
Q ss_pred ccccccCcc
Q psy2392 594 NSRLGDLSI 602 (1165)
Q Consensus 594 ~~~~~~~~~ 602 (1165)
++.+++++.
T Consensus 343 ~~~~~~~~~ 351 (363)
T 3hws_A 343 DGQSEPLLI 351 (363)
T ss_dssp TCCSCCEEE
T ss_pred hCcCCceee
Confidence 998887664
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=297.02 Aligned_cols=303 Identities=66% Similarity=1.034 Sum_probs=252.4
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++|.++.+.|++.|+||+.+++.+..++...|.+.++....++...+.++||+||||||||++|+++|+.++.+++.+++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 4 MTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 57889999999999999999999999998877776655433322345799999999999999999999999999999999
Q ss_pred cccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHH
Q psy2392 252 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 331 (1165)
Q Consensus 252 s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1165)
+.+.+.||+|.+.+..+++++...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------------- 107 (310)
T 1ofh_A 84 TKFTEVGYVGKEVDSIIRDLTDSA-------------------------------------------------------- 107 (310)
T ss_dssp GGGSSCCSGGGSTTHHHHHHHHTT--------------------------------------------------------
T ss_pred hhcccCCccCccHHHHHHHHHHHh--------------------------------------------------------
Confidence 999888999988666666665431
Q ss_pred HhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHH
Q psy2392 332 RLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 411 (1165)
Q Consensus 332 ~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (1165)
.|
T Consensus 108 ---~~--------------------------------------------------------------------------- 109 (310)
T 1ofh_A 108 ---GG--------------------------------------------------------------------------- 109 (310)
T ss_dssp ---TT---------------------------------------------------------------------------
T ss_pred ---hH---------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch
Q psy2392 412 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP 491 (1165)
Q Consensus 412 ~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p 491 (1165)
++..+.+++||||||||++.....+ .+.+.+++++|+.||+++|+..+.++++...+.+++||+++.+..+.|..+.|
T Consensus 110 -~~~~~~~~~vl~iDEi~~l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~ 187 (310)
T 1ofh_A 110 -AIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIP 187 (310)
T ss_dssp -CHHHHHHHCEEEEECGGGGSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCH
T ss_pred -HHhhccCCCEEEEEChhhcCccccc-cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCH
Confidence 0001124689999999999987653 45677888999999999999888888888888999999999887888999999
Q ss_pred hhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 492 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
+|.+||+..|.|++|+.+++.+|++.....+..++...+...+..+.++++++++|++.++..|...+.+++|.|.++++
T Consensus 188 ~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~ 267 (310)
T 1ofh_A 188 ELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVME 267 (310)
T ss_dssp HHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHH
T ss_pred HHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHH
Confidence 99999999999999999999999975444677788888888899999999999999999987666666799999999999
Q ss_pred HHHHHhhcccCC---CeeEEcccccccccccCcccccccccc
Q psy2392 572 KLLEEVSFNSNN---ISLLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 572 ~~l~~~~~~~~~---~~~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
+++....+.... ..+.||.+.|++.++......++++|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~~~~~~~~~ 309 (310)
T 1ofh_A 268 RLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFI 309 (310)
T ss_dssp HHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSSCCCCTTSC
T ss_pred HHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhhhhhHHhhc
Confidence 999876665432 236799999999999998888888875
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=277.47 Aligned_cols=291 Identities=37% Similarity=0.594 Sum_probs=212.1
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhccc---------CCCC-------CccCCcEEEEEcCCCCCchHHH
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT---------GPLQ-------QEITPKNILMIGPTGVGKTEIA 235 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~---------~~~~-------~~~~~~~~Ll~GPpG~GKT~lA 235 (1165)
.++.++.+.|++.|+||++|++.|..++..++++.... ++.+ ....+.++||+||||||||++|
T Consensus 10 ~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 10 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHH
Confidence 56889999999999999999999999997655543210 0000 0112478999999999999999
Q ss_pred HHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccc
Q psy2392 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 315 (1165)
Q Consensus 236 k~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 315 (1165)
+++|+.++.+|+.++++.+...||+|+.....+..++...
T Consensus 90 ~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------------------------------- 129 (376)
T 1um8_A 90 QTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS---------------------------------------- 129 (376)
T ss_dssp HHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHT----------------------------------------
T ss_pred HHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhc----------------------------------------
Confidence 9999999999999999998877898887665555555431
Q ss_pred cCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHH
Q psy2392 316 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 395 (1165)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1165)
.|.
T Consensus 130 -------------------~~~---------------------------------------------------------- 132 (376)
T 1um8_A 130 -------------------DWN---------------------------------------------------------- 132 (376)
T ss_dssp -------------------TTC----------------------------------------------------------
T ss_pred -------------------cch----------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeee-----------
Q psy2392 396 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNT----------- 463 (1165)
Q Consensus 396 ~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~----------- 463 (1165)
+.. ..++||||||||++...+.+. ...+.+++++|+.||.++|+..+..
T Consensus 133 ------------------~~~-~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 193 (376)
T 1um8_A 133 ------------------VQK-AQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEG 193 (376)
T ss_dssp ------------------HHH-HTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC------------
T ss_pred ------------------hhh-cCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCc
Confidence 000 157899999999999875432 3567778889999999999875432
Q ss_pred eceeecCceEEEEEeCCccc-----------------C------C--------------CCCCchhhhCCCCeeEecCCC
Q psy2392 464 KYGIIKTDHILFIASGAFHL-----------------A------K--------------PSDLIPELQGRFPIRVELDSL 506 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~-----------------~------~--------------p~~l~pel~~R~~~~v~~~~L 506 (1165)
....+.|.|++||++|++.. . + ...|.|+|.+||+.++.|++|
T Consensus 194 ~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l 273 (376)
T 1um8_A 194 NFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSI 273 (376)
T ss_dssp ---CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCC
T ss_pred ceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCC
Confidence 12357889999999987420 0 0 124789999999999999999
Q ss_pred CHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCC--
Q psy2392 507 SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI-- 584 (1165)
Q Consensus 507 ~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~-- 584 (1165)
+.+++.+|+....+.+++++.+.+...+..+.++++++++|++.++. .++|+|.|++++++++....++.+..
T Consensus 274 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~-----~~~~~R~L~~~le~~~~~~~~~~~~~~~ 348 (376)
T 1um8_A 274 SLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE-----RKTGARGLRAIIEDFCLDIMFDLPKLKG 348 (376)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH-----TTCTGGGHHHHHHHHHHHHHHTGGGGTT
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc-----cccCcHHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999976666788888888888899999999999999999976 36899999999999999988877652
Q ss_pred -eeEEcccccccccccCccc
Q psy2392 585 -SLLVDADYVNSRLGDLSIN 603 (1165)
Q Consensus 585 -~~~i~~~~v~~~~~~~~~~ 603 (1165)
.+.||.+.|++.+...+..
T Consensus 349 ~~~~i~~~~v~~~~~~~~~~ 368 (376)
T 1um8_A 349 SEVRITKDCVLKQAEPLIIA 368 (376)
T ss_dssp SEEEECHHHHTTSSCCEEEC
T ss_pred CEEEEeHHHhcCCCCceeec
Confidence 3789999999877766543
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=278.39 Aligned_cols=251 Identities=41% Similarity=0.675 Sum_probs=196.6
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCC-CCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGP-LQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~-~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.+|.++.+.|++.|+||+.+++.+..++..++++...... .....++.++||+||||||||++|+++|+.++.+|+.++
T Consensus 4 ~~~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 4 PTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp CCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4577889999999999999999999999776655432211 111123589999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
++++...||+|.+.+..++.++..+.
T Consensus 84 ~~~l~~~~~~g~~~~~~~~~~~~~~~------------------------------------------------------ 109 (363)
T 3hws_A 84 ATTLTEAGYVGEDVENIIQKLLQKCD------------------------------------------------------ 109 (363)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHHHHTT------------------------------------------------------
T ss_pred hHHhcccccccccHHHHHHHHHHHhh------------------------------------------------------
Confidence 99998888998765555665543320
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
+. +
T Consensus 110 -----~~-----------------------------------------------------------------------~- 112 (363)
T 3hws_A 110 -----YD-----------------------------------------------------------------------V- 112 (363)
T ss_dssp -----TC-----------------------------------------------------------------------H-
T ss_pred -----hh-----------------------------------------------------------------------H-
Confidence 00 0
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCC-CCCCCccchhhhhhccccccCcccee-----------eeeeccCceEEEEec
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQ-NNNTDISRAGVQRDLLPLVEGTTVNT-----------KYGIIKTDHILFIAS 1076 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~-~~~~~~~~~gvq~~lL~~~Eg~~v~~-----------k~~~~~t~~ilfI~~ 1076 (1165)
+.+ .+||+||||||++.....+ ..+.+++++++|..||+++||..+.. ....+.|.|++|||+
T Consensus 113 ~~~-----~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~ 187 (363)
T 3hws_A 113 QKA-----QRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 187 (363)
T ss_dssp HHH-----HHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEE
T ss_pred Hhc-----CCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEec
Confidence 111 5789999999999987543 24567788899999999999764332 234789999999999
Q ss_pred CCCC---------CCC---------------------------CCC-----CchhhhccCCeEEEcCCCCHHHHHHHHhh
Q psy2392 1077 GAFH---------LAK---------------------------PSD-----LIPELQGRFPIRVELDSLSISDFTRIMTS 1115 (1165)
Q Consensus 1077 gaf~---------~~~---------------------------p~d-----l~pel~gR~~i~v~l~~l~~~~l~~il~~ 1115 (1165)
|+|. ..+ |.+ |.|+|.+||++++.|.||+.+++.+|+..
T Consensus 188 g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 188 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 9985 111 222 89999999999999999999999999997
Q ss_pred hHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCC
Q psy2392 1116 TNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 1156 (1165)
Q Consensus 1116 ~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~ 1156 (1165)
+.+.+++++...++..++.+.|+++++++|++.+|..+.++
T Consensus 268 ~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~ga 308 (363)
T 3hws_A 268 PKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGA 308 (363)
T ss_dssp STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCc
Confidence 77779999999999999999999999999999999984433
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=268.30 Aligned_cols=249 Identities=69% Similarity=1.076 Sum_probs=207.3
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++...|.++|+||+++++.+..++...|.+.++....+....+.++||+||||||||++|+++++.++.+++.++
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 3 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (310)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCHHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 35788999999999999999999999999876666555433222223578999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
++.+.+.||+|.+.+..+++++..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 107 (310)
T 1ofh_A 83 ATKFTEVGYVGKEVDSIIRDLTDSA------------------------------------------------------- 107 (310)
T ss_dssp GGGGSSCCSGGGSTTHHHHHHHHTT-------------------------------------------------------
T ss_pred chhcccCCccCccHHHHHHHHHHHh-------------------------------------------------------
Confidence 9999988899987666666554221
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
.|.
T Consensus 108 ----~~~------------------------------------------------------------------------- 110 (310)
T 1ofh_A 108 ----GGA------------------------------------------------------------------------- 110 (310)
T ss_dssp ----TTC-------------------------------------------------------------------------
T ss_pred ----hHH-------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
+..+...+|+||||||++.....+ .+.+.+++++|+.||+++|+..+.++++...+.++.||++|.+....|..+.
T Consensus 111 ---~~~~~~~~vl~iDEi~~l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 186 (310)
T 1ofh_A 111 ---IDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLI 186 (310)
T ss_dssp ---HHHHHHHCEEEEECGGGGSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSC
T ss_pred ---HhhccCCCEEEEEChhhcCccccc-cccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCC
Confidence 001124689999999999877543 4567788899999999999998888888889999999999998888999999
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccC
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
|+|.+||+.++.|++|+.+++.+|++.....++.++...++.++..+.|++++++.|++.++..|
T Consensus 187 ~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 251 (310)
T 1ofh_A 187 PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVN 251 (310)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhc
Confidence 99999999989999999999999999666678888888888899999999999999999998643
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=250.41 Aligned_cols=251 Identities=40% Similarity=0.640 Sum_probs=178.4
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhccc---------CCC-------CCCCCCceEEEEccCCCChhHHH
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQIT---------GPL-------QQEITPKNILMIGPTGVGKTEIA 833 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~---------~~~-------~~~~~~~~iLL~GPpG~GKT~lA 833 (1165)
.++.++.+.|+++|+||+++++.|..++..++++.... .+. .....+.++||+||||||||++|
T Consensus 10 ~~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 10 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHH
Confidence 45788999999999999999999999986655443210 000 00112478999999999999999
Q ss_pred HHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccc
Q psy2392 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 913 (1165)
Q Consensus 834 k~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~ 913 (1165)
+++|+.++.+|+.++++.+...||+|.+.+..+..++..+
T Consensus 90 ~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------------------------------- 129 (376)
T 1um8_A 90 QTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQAS---------------------------------------- 129 (376)
T ss_dssp HHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHT----------------------------------------
T ss_pred HHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhc----------------------------------------
Confidence 9999999999999999998878888876555555443221
Q ss_pred cCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHH
Q psy2392 914 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 993 (1165)
Q Consensus 914 ~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l 993 (1165)
.|.
T Consensus 130 -------------------~~~---------------------------------------------------------- 132 (376)
T 1um8_A 130 -------------------DWN---------------------------------------------------------- 132 (376)
T ss_dssp -------------------TTC----------------------------------------------------------
T ss_pred -------------------cch----------------------------------------------------------
Confidence 000
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCC-CCCCCccchhhhhhccccccCcccee-----------
Q psy2392 994 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQ-NNNTDISRAGVQRDLLPLVEGTTVNT----------- 1061 (1165)
Q Consensus 994 ~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~-~~~~~~~~~gvq~~lL~~~Eg~~v~~----------- 1061 (1165)
+ ..+ ..||+||||||++...+.+ ..+.+.+.+++|+.||.++|+..+..
T Consensus 133 -------------~-~~~-----~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 193 (376)
T 1um8_A 133 -------------V-QKA-----QKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEG 193 (376)
T ss_dssp -------------H-HHH-----TTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC------------
T ss_pred -------------h-hhc-----CCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCc
Confidence 0 111 5789999999999887433 23467788889999999999875421
Q ss_pred eeeeccCceEEEEecCCCCC-----------------C------C--------------CCCCchhhhccCCeEEEcCCC
Q psy2392 1062 KYGIIKTDHILFIASGAFHL-----------------A------K--------------PSDLIPELQGRFPIRVELDSL 1104 (1165)
Q Consensus 1062 k~~~~~t~~ilfI~~gaf~~-----------------~------~--------------p~dl~pel~gR~~i~v~l~~l 1104 (1165)
.+..+.|.|++|||+|++.. . + ...+.|+|.+||+.++.|+||
T Consensus 194 ~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l 273 (376)
T 1um8_A 194 NFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSI 273 (376)
T ss_dssp ---CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCC
T ss_pred ceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCC
Confidence 23358899999999987531 0 1 124789999999999999999
Q ss_pred CHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCC
Q psy2392 1105 SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 1156 (1165)
Q Consensus 1105 ~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~ 1156 (1165)
+.+++.+|+..+.+.+++++...+...|..+.|+++++++|+..++..+.++
T Consensus 274 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 325 (376)
T 1um8_A 274 SLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGA 325 (376)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTG
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCc
Confidence 9999999999888889999999998889999999999999999999753333
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-22 Score=224.34 Aligned_cols=248 Identities=27% Similarity=0.367 Sum_probs=180.6
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCce
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFI 247 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i 247 (1165)
...+.++.+.|.+.++||+.+++.+..++... +.++..+.+|. .+++|+||||||||++|+++|+.+ +.+++
T Consensus 5 ~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~--~~~~~~~~~~~---~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 5 REKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRPI---GSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp HHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHH--HHTCSCTTSCS---EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH--hcCCCCCCCCc---eEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 45677899999999999999999999999765 55555544442 689999999999999999999998 56789
Q ss_pred EEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHH
Q psy2392 248 KIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQ 327 (1165)
Q Consensus 248 ~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 327 (1165)
.++++.+... .....++... .+
T Consensus 80 ~~~~~~~~~~--------~~~~~l~g~~------------------------------~~-------------------- 101 (311)
T 4fcw_A 80 RIDMTEYMEK--------HAVSRLIGAP------------------------------PG-------------------- 101 (311)
T ss_dssp EEEGGGCCST--------THHHHHHCCC------------------------------TT--------------------
T ss_pred Eeeccccccc--------ccHHHhcCCC------------------------------Cc--------------------
Confidence 9999876432 1122222110 00
Q ss_pred HHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChh
Q psy2392 328 IFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 407 (1165)
Q Consensus 328 ~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (1165)
..|... .
T Consensus 102 -------------------------------~~~~~~-----------------~------------------------- 108 (311)
T 4fcw_A 102 -------------------------------YVGYEE-----------------G------------------------- 108 (311)
T ss_dssp -------------------------------STTTTT-----------------C-------------------------
T ss_pred -------------------------------cccccc-----------------c-------------------------
Confidence 000000 0
Q ss_pred HHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee-ceeecCceEEEEEeCCccc---
Q psy2392 408 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-YGIIKTDHILFIASGAFHL--- 483 (1165)
Q Consensus 408 ~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~-~~~~~t~~ilfI~~gaf~~--- 483 (1165)
.....++... +++|+||||||++.+. +|+.||+++|...+... ...++..+++||++++...
T Consensus 109 ~~~~~~~~~~-~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i 174 (311)
T 4fcw_A 109 GQLTEAVRRR-PYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLI 174 (311)
T ss_dssp CHHHHHHHHC-SSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHH
T ss_pred chHHHHHHhC-CCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHH
Confidence 0001122222 5789999999999754 78899999987665432 2256777889999976410
Q ss_pred -------CC------------CCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHH
Q psy2392 484 -------AK------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGI 544 (1165)
Q Consensus 484 -------~~------------p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~ 544 (1165)
.. +..|.|+|.+||+..+.|.||+.+++.+|+. ..+.++...+...+..+.++++++
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~~ 250 (311)
T 4fcw_A 175 LEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQMSYLRARLAEKRISLELTEAAK 250 (311)
T ss_dssp HTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHTHHHHHHHHTTTCEEEECHHHH
T ss_pred HhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHH----HHHHHHHHHHHhCCcEEEeCHHHH
Confidence 00 2358899999999999999999999999994 555666666666788999999999
Q ss_pred HHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 545 QRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 545 ~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+.|++.+++ ..+|+|.|++++++++...
T Consensus 251 ~~l~~~~~~-----~~gn~R~L~~~i~~~~~~~ 278 (311)
T 4fcw_A 251 DFLAERGYD-----PVFGARPLRRVIQRELETP 278 (311)
T ss_dssp HHHHHHSCB-----TTTBTTTHHHHHHHHTHHH
T ss_pred HHHHHhCCC-----ccCCchhHHHHHHHHHHHH
Confidence 999998765 3689999999999987643
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-22 Score=232.86 Aligned_cols=239 Identities=19% Similarity=0.317 Sum_probs=172.0
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|++++|+.|.+++..+++++.++...+.. +|+++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~-~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk-~vG 224 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA-QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK-YIG 224 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS-STT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc-ccc
Confidence 4699999999999999999888887766543322 35899999999999999999999999999999999999886 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++++|..+
T Consensus 225 es-e~~vr~lF~~A------------------------------------------------------------------ 237 (405)
T 4b4t_J 225 EG-SRMVRELFVMA------------------------------------------------------------------ 237 (405)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 88 56688888663
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 238 ------------------------------------------------------------------------r~--~aP~ 243 (405)
T 4b4t_J 238 ------------------------------------------------------------------------RE--HAPS 243 (405)
T ss_dssp ------------------------------------------------------------------------HH--TCSE
T ss_pred ------------------------------------------------------------------------HH--hCCc
Confidence 11 1489
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.+++++..++ +.+.....+...||..|||-. ...++++|+|+ +.|+.++|+|+ |||+
T Consensus 244 IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--------~~~~V~vIaAT----Nrpd~LDpAllRpGRfD 311 (405)
T 4b4t_J 244 IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE--------TSKNIKIIMAT----NRLDILDPALLRPGRID 311 (405)
T ss_dssp EEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT--------CCCCEEEEEEE----SCSSSSCHHHHSTTSSC
T ss_pred eEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC--------CCCCeEEEecc----CChhhCCHhHcCCCcCc
Confidence 999999999998866533 223233345567888888732 35678888884 78999999998 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..|+|..++.++..+||+ .+ + .++.+. ++-.++.||+.+. ++-++-|.+++........
T Consensus 312 ~~I~i~lPd~~~R~~Il~----~~-------~--~~~~l~-~dvdl~~lA~~t~-------G~SGADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 312 RKIEFPPPSVAARAEILR----IH-------S--RKMNLT-RGINLRKVAEKMN-------GCSGADVKGVCTEAGMYAL 370 (405)
T ss_dssp CEEECCCCCHHHHHHHHH----HH-------H--TTSBCC-SSCCHHHHHHHCC-------SCCHHHHHHHHHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHH----HH-------h--cCCCCC-ccCCHHHHHHHCC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999994 11 1 223222 1113677777653 4455567777655433222
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.+ ....|+.+.+...+..
T Consensus 371 r~---~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 371 RE---RRIHVTQEDFELAVGK 388 (405)
T ss_dssp HT---TCSBCCHHHHHHHHHH
T ss_pred Hc---CCCCcCHHHHHHHHHH
Confidence 11 1234565555554443
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-22 Score=252.34 Aligned_cols=312 Identities=15% Similarity=0.230 Sum_probs=196.1
Q ss_pred ecCCeEEEEccCHHHHHHhhhccchhhh--hhccccceEEecCCCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2392 27 RRGNKVSLGGDGQVTFGNVIMKNSAKKV--RKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQGNLMRASVELAKEWRN 104 (1165)
Q Consensus 27 ARGel~~IgATT~~Eyr~~IekD~Al~R--R~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~~al~~~v~ls~rYi~ 104 (1165)
.++.+.+||||..-+- -|+||.| | |. ..+.|+-|+.++-..||+.+..++......-|..++..++.|..
T Consensus 337 ~~~~V~VIaaTN~~d~-----LD~ALrR~GR--Fd-~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 337 QRAHVIVMAATNRPNS-----IDPALRRFGR--FD-REVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVG 408 (806)
T ss_dssp GGGCEEEEEECSSTTT-----SCTTTTSTTS--SC-EEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCH
T ss_pred ccCCEEEEEecCChhh-----cCHHHhCCcc--cc-eEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCH
Confidence 5788999999987653 3999999 8 99 78889999999999999865443321111335556666555543
Q ss_pred CCCchhH-HHHHhhhhhhhhhhc---cCCCCccCccccccccc-ccchhhHHHHHHhhhccccCchhhhhhhhHHHHHHH
Q psy2392 105 DRTLRRL-EAMLLTANRETTLII---TGNGDVLEPENGIGAIG-SGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVS 179 (1165)
Q Consensus 105 ~r~lPDk-alld~a~a~~~~~~~---~~~~~~~~~e~~~~~~~-~~~~~~~~va~~l~~~t~l~~~~i~~~~~~~~~l~~ 179 (1165)
-|+ ++..+|+-....... +........+. ...+. ...++. .++.. +.+....+.. .+...
T Consensus 409 ----aDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~-~~~~~v~~~Df~----~Al~~---~~ps~~r~~~---~~~p~ 473 (806)
T 3cf2_A 409 ----ADLAALCSEAALQAIRKKMDLIDLEDETIDAEV-MNSLAVTMDDFR----WALSQ---SNPSALRETV---VEVPQ 473 (806)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHH-HHHCEECTTHHH----HHHSS---SSCCCCCCCC---CBCCC
T ss_pred ----HHHHHHHHHHHHHHHHhccccccccccccchhh-hccceeeHHHHH----HHHHh---CCCccccccc---ccCCC
Confidence 343 344444333321111 10000000000 00000 011111 11111 1110000000 00011
Q ss_pred HhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccc
Q psy2392 180 ELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGY 259 (1165)
Q Consensus 180 ~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gy 259 (1165)
.-+.+|.|++++++.|.+++..+++++.+....+.. ++.++||+||||||||++|+++|.+++.+|+.++.+++.++ |
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~-~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~-~ 551 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-W 551 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCC-CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT-T
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc-c
Confidence 124689999999999999998887777666543322 35899999999999999999999999999999999999986 9
Q ss_pred cccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCC
Q psy2392 260 VGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339 (1165)
Q Consensus 260 vG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 339 (1165)
+|.+ +..++.+|..+
T Consensus 552 vGes-e~~vr~lF~~A---------------------------------------------------------------- 566 (806)
T 3cf2_A 552 FGES-EANVREIFDKA---------------------------------------------------------------- 566 (806)
T ss_dssp CSSC-HHHHHHHHHHH----------------------------------------------------------------
T ss_pred cchH-HHHHHHHHHHH----------------------------------------------------------------
Confidence 9999 56688888763
Q ss_pred CcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhcc
Q psy2392 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ 419 (1165)
Q Consensus 340 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 419 (1165)
.. ..
T Consensus 567 --------------------------------------------------------------------------r~--~~ 570 (806)
T 3cf2_A 567 --------------------------------------------------------------------------RQ--AA 570 (806)
T ss_dssp --------------------------------------------------------------------------HT--TC
T ss_pred --------------------------------------------------------------------------HH--cC
Confidence 01 14
Q ss_pred ceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--C
Q psy2392 420 NGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R 496 (1165)
++||||||||.+++.+..+. ........+.+.||..|+|-. ..+++++|+|+ +.|+.++|+|+. |
T Consensus 571 P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~--------~~~~V~vi~aT----N~p~~lD~AllRpgR 638 (806)
T 3cf2_A 571 PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPGR 638 (806)
T ss_dssp SEEEECSCGGGCC--------------CHHHHHHHHHHHSSC--------SSSSEEEECC-----CCSSSSCHHHHSTTT
T ss_pred CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC--------CCCCEEEEEeC----CCchhCCHhHcCCCc
Confidence 79999999999998875422 122223457788999999842 34578888884 689999999985 9
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|+.+|.+..++.++..+|++
T Consensus 639 fd~~i~v~lPd~~~R~~il~ 658 (806)
T 3cf2_A 639 LDQLIYIPLPDEKSRVAILK 658 (806)
T ss_dssp SCCEEEC-----CHHHHTTT
T ss_pred ceEEEEECCcCHHHHHHHHH
Confidence 99999999999999999995
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-22 Score=228.79 Aligned_cols=180 Identities=23% Similarity=0.406 Sum_probs=142.9
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|++++++.|.+++..+++...+...... .+|+++|||||||||||++|+++|++++.+|+.++++++.++ |+|
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk-~vG 224 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK-YIG 224 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS-STT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc-ccc
Confidence 589999999999999999887665544432111 126899999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++++|..|..+
T Consensus 225 es-e~~vr~lF~~Ar~~--------------------------------------------------------------- 240 (405)
T 4b4t_J 225 EG-SRMVRELFVMAREH--------------------------------------------------------------- 240 (405)
T ss_dssp HH-HHHHHHHHHHHHHT---------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHHHHh---------------------------------------------------------------
Confidence 98 56789988776222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 241 -----------------------------------------------------------------------------aP~ 243 (405)
T 4b4t_J 241 -----------------------------------------------------------------------------APS 243 (405)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 567
Q ss_pred eeeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
||||||||.|++.+..++ +.+.....+-..||..|+|. -..+++++|+++ +.|+.|.|+|++ ||+
T Consensus 244 IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------~~~~~V~vIaAT----Nrpd~LDpAllRpGRfD 311 (405)
T 4b4t_J 244 IIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF--------ETSKNIKIIMAT----NRLDILDPALLRPGRID 311 (405)
T ss_dssp EEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT--------TCCCCEEEEEEE----SCSSSSCHHHHSTTSSC
T ss_pred eEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc--------CCCCCeEEEecc----CChhhCCHhHcCCCcCc
Confidence 999999999998764322 22222222344567777753 345678888886 589999999985 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|+.++.++..+||+
T Consensus 312 ~~I~i~lPd~~~R~~Il~ 329 (405)
T 4b4t_J 312 RKIEFPPPSVAARAEILR 329 (405)
T ss_dssp CEEECCCCCHHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHH
Confidence 999999999999999997
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=225.46 Aligned_cols=238 Identities=17% Similarity=0.277 Sum_probs=168.2
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|.+++|+.|.+.+..+++++.+....+.. +|.++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~-~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk-~vG 258 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIK-PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK-YLG 258 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC-CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS-SSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc-cCc
Confidence 4689999999999999999877776655433222 35899999999999999999999999999999999999885 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++.+|..+
T Consensus 259 es-ek~ir~lF~~A------------------------------------------------------------------ 271 (437)
T 4b4t_I 259 DG-PRLCRQIFKVA------------------------------------------------------------------ 271 (437)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 88 56677777662
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 272 ------------------------------------------------------------------------r~--~aP~ 277 (437)
T 4b4t_I 272 ------------------------------------------------------------------------GE--NAPS 277 (437)
T ss_dssp ------------------------------------------------------------------------HH--TCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCc
Confidence 11 1479
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.++..+..++ +.+.....+...||..++|. -..+++++|+|+ +.|+.++|+|+ |||+
T Consensus 278 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~--------~~~~~ViVIaAT----Nrpd~LDpALlRpGRfD 345 (437)
T 4b4t_I 278 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF--------DDRGDVKVIMAT----NKIETLDPALIRPGRID 345 (437)
T ss_dssp EEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC--------CCSSSEEEEEEE----SCSTTCCTTSSCTTTEE
T ss_pred EEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc--------CCCCCEEEEEeC----CChhhcCHHHhcCCcee
Confidence 999999999998876533 22222233444567767752 245678899884 78999999998 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..|+|..++.++..+||+ .. ++ ++.+. ++-.++.||+.+. ++-++-|.+++........
T Consensus 346 ~~I~v~lPd~~~R~~Il~----~~-------l~--~~~l~-~dvdl~~LA~~T~-------GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 346 RKILFENPDLSTKKKILG----IH-------TS--KMNLS-EDVNLETLVTTKD-------DLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EEECCCCCCHHHHHHHHH----HH-------HT--TSCBC-SCCCHHHHHHHCC-------SCCHHHHHHHHHHHHHHHH
T ss_pred EEEEcCCcCHHHHHHHHH----HH-------hc--CCCCC-CcCCHHHHHHhCC-------CCCHHHHHHHHHHHHHHHH
Confidence 999999999999999994 11 11 22222 1112677777653 4445567777655433222
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
.+ ....|+.+.+.+.+.
T Consensus 405 r~---~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 405 RE---RRMQVTAEDFKQAKE 421 (437)
T ss_dssp HT---TCSCBCHHHHHHHHH
T ss_pred Hc---CCCccCHHHHHHHHH
Confidence 11 113456555555443
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.1e-21 Score=224.96 Aligned_cols=217 Identities=24% Similarity=0.348 Sum_probs=159.0
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|.+++|+.|.+.+..+++++.+....+.. +|+++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~-~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~-~vG 257 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR-APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIG 257 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC-CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS-CSS
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc-ccc
Confidence 4699999999999999998887776655432221 36899999999999999999999999999999999999885 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++.+|..+
T Consensus 258 es-e~~ir~lF~~A------------------------------------------------------------------ 270 (434)
T 4b4t_M 258 EG-AKLVRDAFALA------------------------------------------------------------------ 270 (434)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 88 56677777662
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 271 ------------------------------------------------------------------------~~--~aP~ 276 (434)
T 4b4t_M 271 ------------------------------------------------------------------------KE--KAPT 276 (434)
T ss_dssp ------------------------------------------------------------------------HH--HCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCe
Confidence 11 1489
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.+++++.++. +++.....+...||..++|-. ..+++++|+|+ +.|+.++|+|+ |||+
T Consensus 277 IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~--------~~~~ViVIaaT----Nrp~~LD~AllRpGRfD 344 (434)
T 4b4t_M 277 IIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS--------SDDRVKVLAAT----NRVDVLDPALLRSGRLD 344 (434)
T ss_dssp EEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC--------SSCSSEEEEEC----SSCCCCCTTTCSTTSEE
T ss_pred EEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC--------CCCCEEEEEeC----CCchhcCHhHhcCCcee
Confidence 999999999998876522 122222234456888888732 34578888884 68999999996 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
..|+|..++.++..+|++ .+++ ...+.-.+ .++.||+.+. ++-++-|.+++....
T Consensus 345 ~~I~i~lPd~~~R~~Il~----~~~~-------~~~~~~dv---dl~~lA~~t~-------G~sGADi~~l~~eA~ 399 (434)
T 4b4t_M 345 RKIEFPLPSEDSRAQILQ----IHSR-------KMTTDDDI---NWQELARSTD-------EFNGAQLKAVTVEAG 399 (434)
T ss_dssp EEEECCCCCHHHHHHHHH----HHHH-------HSCBCSCC---CHHHHHHHCS-------SCCHHHHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH----HHhc-------CCCCCCcC---CHHHHHHhCC-------CCCHHHHHHHHHHHH
Confidence 999999999999999994 2211 11111111 2567777653 444556777766543
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.5e-21 Score=226.58 Aligned_cols=180 Identities=25% Similarity=0.375 Sum_probs=143.3
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|+|.+++++.|.+++..+++++.++...+.. +|+++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~-~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk-~~G 257 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK-YIG 257 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS-SSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc-cch
Confidence 4689999999999999999887777665433221 35899999999999999999999999999999999999885 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++.+|..+
T Consensus 258 es-e~~ir~~F~~A------------------------------------------------------------------ 270 (437)
T 4b4t_L 258 ES-ARIIREMFAYA------------------------------------------------------------------ 270 (437)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 87 55677777552
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 271 ------------------------------------------------------------------------~~--~~P~ 276 (437)
T 4b4t_L 271 ------------------------------------------------------------------------KE--HEPC 276 (437)
T ss_dssp ------------------------------------------------------------------------HH--SCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCc
Confidence 01 1589
Q ss_pred EEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.++.++.+.+ +.+.....+...||..|+|.. ..+++++|+|+ +.|+.++|+|+ |||+
T Consensus 277 IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~--------~~~~vivI~AT----Nrp~~LDpAllRpGRfD 344 (437)
T 4b4t_L 277 IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD--------NLGQTKIIMAT----NRPDTLDPALLRPGRLD 344 (437)
T ss_dssp EEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS--------CTTSSEEEEEE----SSTTSSCTTTTSTTSEE
T ss_pred eeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc--------CCCCeEEEEec----CCchhhCHHHhCCCccc
Confidence 999999999998875422 222223345557888888732 34678888884 78999999997 6799
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
..|+|..++.++..+|++
T Consensus 345 ~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 345 RKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp EEECCCCCCHHHHHHHHH
T ss_pred eeeecCCcCHHHHHHHHH
Confidence 999999999999999994
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.3e-21 Score=223.31 Aligned_cols=216 Identities=22% Similarity=0.326 Sum_probs=158.7
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|++++|+.|.+.+..+++++.+....+.. +|.++|||||||||||++|+++|.+++.+|+.++++++.+. |+|
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~-pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk-~vG 285 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGID-PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK-YVG 285 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC-SSS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC-CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc-cCC
Confidence 4689999999999999998777666555432211 36899999999999999999999999999999999999885 999
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.+ +..++.+|..+
T Consensus 286 es-ek~ir~lF~~A------------------------------------------------------------------ 298 (467)
T 4b4t_H 286 EG-ARMVRELFEMA------------------------------------------------------------------ 298 (467)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 88 56677777662
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 299 ------------------------------------------------------------------------r~--~aP~ 304 (467)
T 4b4t_H 299 ------------------------------------------------------------------------RT--KKAC 304 (467)
T ss_dssp ------------------------------------------------------------------------HH--TCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCc
Confidence 11 1489
Q ss_pred EEEEecchhhhccCCCCCC-CccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCC
Q psy2392 422 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 498 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~-~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~ 498 (1165)
||||||||.++.++.+.++ .+.....+...||..|+|. -...++++|+|+ +.|+.++|+|+ |||+
T Consensus 305 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------~~~~~ViVIaAT----Nrpd~LDpALlRpGRFD 372 (467)
T 4b4t_H 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF--------DPRGNIKVMFAT----NRPNTLDPALLRPGRID 372 (467)
T ss_dssp EEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS--------CCTTTEEEEEEC----SCTTSBCHHHHSTTTCC
T ss_pred eEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc--------CCCCcEEEEeCC----CCcccCChhhhcccccc
Confidence 9999999999988765322 2222223445667777763 245678899884 78999999997 5999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
..|+|..++.++..+||+ .+ + .++.+.- +-.++.||+.+. ++-++-|.+++...
T Consensus 373 ~~I~i~lPd~~~R~~Ilk----~~-------l--~~~~l~~-dvdl~~LA~~T~-------GfSGADI~~l~~eA 426 (467)
T 4b4t_H 373 RKVEFSLPDLEGRANIFR----IH-------S--KSMSVER-GIRWELISRLCP-------NSTGAELRSVCTEA 426 (467)
T ss_dssp EEECCCCCCHHHHHHHHH----HH-------H--TTSCBCS-SCCHHHHHHHCC-------SCCHHHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH----HH-------h--cCCCCCC-CCCHHHHHHHCC-------CCCHHHHHHHHHHH
Confidence 999999999999999994 11 1 2222221 112567777663 34455677776554
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=220.12 Aligned_cols=217 Identities=20% Similarity=0.369 Sum_probs=160.4
Q ss_pred hcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 181 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 181 L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
-.++|.|.+++|+.|.+.+..+.+++.+....+.. +|+++|||||||||||++|+++|..++.+|+.++++++.+. |+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~-~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~-~~ 247 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGID-PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK-YL 247 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS-SC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc-cc
Confidence 35699999999999999998877766555432221 35899999999999999999999999999999999999885 99
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|.+ +..++++|..+
T Consensus 248 Ge~-e~~ir~lF~~A----------------------------------------------------------------- 261 (428)
T 4b4t_K 248 GEG-PRMVRDVFRLA----------------------------------------------------------------- 261 (428)
T ss_dssp SHH-HHHHHHHHHHH-----------------------------------------------------------------
T ss_pred chh-HHHHHHHHHHH-----------------------------------------------------------------
Confidence 988 56677777662
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
.. ..+
T Consensus 262 -------------------------------------------------------------------------~~--~aP 266 (428)
T 4b4t_K 262 -------------------------------------------------------------------------RE--NAP 266 (428)
T ss_dssp -------------------------------------------------------------------------HH--TCS
T ss_pred -------------------------------------------------------------------------HH--cCC
Confidence 11 147
Q ss_pred eEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCC
Q psy2392 421 GIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRF 497 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~ 497 (1165)
+||||||||.++..+.+.. +.+.....+...||..++|- ....++++|+|+ +.|+.++|+|+ |||
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~--------~~~~~v~vI~aT----N~~~~LD~AllRpGRf 334 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF--------DQSTNVKVIMAT----NRADTLDPALLRPGRL 334 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS--------CSSCSEEEEEEE----SCSSSCCHHHHSSSSE
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC--------CCCCCEEEEEec----CChhhcChhhhcCCcc
Confidence 9999999999998875432 22323334566788888873 245678899884 68999999998 599
Q ss_pred CeeEecC-CCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 498 PIRVELD-SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 498 ~~~v~~~-~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
+..|+|. .++.++...|++ .+ +. ++.+. ++-.++.||..+. ++-++-|.+++...
T Consensus 335 d~~I~~p~lPd~~~R~~Il~----~~-------~~--~~~l~-~~~dl~~lA~~t~-------G~sgadi~~l~~eA 390 (428)
T 4b4t_K 335 DRKIEFPSLRDRRERRLIFG----TI-------AS--KMSLA-PEADLDSLIIRND-------SLSGAVIAAIMQEA 390 (428)
T ss_dssp EEEEECCSSCCHHHHHHHHH----HH-------HH--SSCBC-TTCCHHHHHHHTT-------TCCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH----HH-------hc--CCCCC-cccCHHHHHHHCC-------CCCHHHHHHHHHHH
Confidence 9999995 689999999984 12 11 22221 1123677887663 34455677776554
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.4e-21 Score=220.48 Aligned_cols=180 Identities=20% Similarity=0.353 Sum_probs=139.5
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|++++++.|.+.+..+++...+...... .+|+++|||||||||||++|+++|++++.+|+.++++++.++ |+|
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk-~vG 258 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK-YLG 258 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS-SSS
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc-cCc
Confidence 479999999999999999876544333321111 126999999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++.+|..|..+
T Consensus 259 es-ek~ir~lF~~Ar~~--------------------------------------------------------------- 274 (437)
T 4b4t_I 259 DG-PRLCRQIFKVAGEN--------------------------------------------------------------- 274 (437)
T ss_dssp HH-HHHHHHHHHHHHHT---------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 98 46788888766222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 275 -----------------------------------------------------------------------------aP~ 277 (437)
T 4b4t_I 275 -----------------------------------------------------------------------------APS 277 (437)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 567
Q ss_pred eeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
||||||||.|+..+...++ .+.....+...||..++| .-..+++++|+|+ +.|+.|.|+|++ ||.
T Consensus 278 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg--------~~~~~~ViVIaAT----Nrpd~LDpALlRpGRfD 345 (437)
T 4b4t_I 278 IVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG--------FDDRGDVKVIMAT----NKIETLDPALIRPGRID 345 (437)
T ss_dssp EEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH--------CCCSSSEEEEEEE----SCSTTCCTTSSCTTTEE
T ss_pred EEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC--------cCCCCCEEEEEeC----CChhhcCHHHhcCCcee
Confidence 9999999999988644221 121111233345555554 3345678899986 589999999985 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..|+|+.++.++..+||+
T Consensus 346 ~~I~v~lPd~~~R~~Il~ 363 (437)
T 4b4t_I 346 RKILFENPDLSTKKKILG 363 (437)
T ss_dssp EEECCCCCCHHHHHHHHH
T ss_pred EEEEcCCcCHHHHHHHHH
Confidence 999999999999999997
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=221.58 Aligned_cols=180 Identities=26% Similarity=0.390 Sum_probs=139.7
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|.+++++.|.+.+..+++...+..... ..+|+++|||||||||||++|+++|++++.+|+.++++++.++ |+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g-~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~-~vG 257 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMG-IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM-YIG 257 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC-CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS-CSS
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc-ccc
Confidence 58999999999999999887655443332111 1126899999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++.+|..|..+
T Consensus 258 es-e~~ir~lF~~A~~~--------------------------------------------------------------- 273 (434)
T 4b4t_M 258 EG-AKLVRDAFALAKEK--------------------------------------------------------------- 273 (434)
T ss_dssp HH-HHHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 88 46788888766222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
.++
T Consensus 274 -----------------------------------------------------------------------------aP~ 276 (434)
T 4b4t_M 274 -----------------------------------------------------------------------------APT 276 (434)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCe
Confidence 578
Q ss_pred eeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
||||||||.|+..+....+ ++.....+-..||..|+|. -..+++++|+++ +.|+.|.|+|++ ||.
T Consensus 277 IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~--------~~~~~ViVIaaT----Nrp~~LD~AllRpGRfD 344 (434)
T 4b4t_M 277 IIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGF--------SSDDRVKVLAAT----NRVDVLDPALLRSGRLD 344 (434)
T ss_dssp EEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTS--------CSSCSSEEEEEC----SSCCCCCTTTCSTTSEE
T ss_pred EEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhcc--------CCCCCEEEEEeC----CCchhcCHhHhcCCcee
Confidence 9999999999987643211 1111112234577777763 234578888886 589999999965 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|+.++.++..+||+
T Consensus 345 ~~I~i~lPd~~~R~~Il~ 362 (434)
T 4b4t_M 345 RKIEFPLPSEDSRAQILQ 362 (434)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH
Confidence 999999999999999997
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=219.42 Aligned_cols=180 Identities=24% Similarity=0.363 Sum_probs=139.7
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++++++.|.+.+..+++...+..... ..+|+++|||||||||||++|+++|++++.+|+.++++++.++ |+|
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G-i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk-~vG 285 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLG-IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK-YVG 285 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC-SSS
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC-CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc-cCC
Confidence 57999999999999999886554433322111 1126999999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++++|..|..+
T Consensus 286 es-ek~ir~lF~~Ar~~--------------------------------------------------------------- 301 (467)
T 4b4t_H 286 EG-ARMVRELFEMARTK--------------------------------------------------------------- 301 (467)
T ss_dssp HH-HHHHHHHHHHHHHT---------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 98 46688888766222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 302 -----------------------------------------------------------------------------aP~ 304 (467)
T 4b4t_H 302 -----------------------------------------------------------------------------KAC 304 (467)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 567
Q ss_pred eeeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
||||||||.|+..+.... +.+.....+...||..|+| .-..+++++|+++ +.|+.|.|+|++ ||.
T Consensus 305 IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg--------~~~~~~ViVIaAT----Nrpd~LDpALlRpGRFD 372 (467)
T 4b4t_H 305 IIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDG--------FDPRGNIKVMFAT----NRPNTLDPALLRPGRID 372 (467)
T ss_dssp EEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHS--------SCCTTTEEEEEEC----SCTTSBCHHHHSTTTCC
T ss_pred eEeecccccccccccCcCCCccHHHHHHHHHHHHHhhc--------cCCCCcEEEEeCC----CCcccCChhhhcccccc
Confidence 999999999998764322 2121122233455666664 2345678999986 589999999985 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|+.++.++..+||+
T Consensus 373 ~~I~i~lPd~~~R~~Ilk 390 (467)
T 4b4t_H 373 RKVEFSLPDLEGRANIFR 390 (467)
T ss_dssp EEECCCCCCHHHHHHHHH
T ss_pred EEEEeCCcCHHHHHHHHH
Confidence 999999999999999997
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=204.46 Aligned_cols=231 Identities=26% Similarity=0.377 Sum_probs=166.4
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCe
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPF 844 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~f 844 (1165)
+.....++.+.|.+.++||+.+++.+...+... ..++..+.++ ..+++|+||||||||++|+++++.+ +.+|
T Consensus 4 ~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~--~~~~~~~~~~---~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 4 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRP---IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp HHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHH--HHTCSCTTSC---SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH--hcCCCCCCCC---ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 355677899999999999999999999999765 4455444333 4689999999999999999999998 5679
Q ss_pred EEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhH
Q psy2392 845 IKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTR 924 (1165)
Q Consensus 845 i~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r 924 (1165)
+.++++.+... ....++++.. ++.
T Consensus 79 ~~~~~~~~~~~--------~~~~~l~g~~-------------------------------------~~~----------- 102 (311)
T 4fcw_A 79 IRIDMTEYMEK--------HAVSRLIGAP-------------------------------------PGY----------- 102 (311)
T ss_dssp EEEEGGGCCST--------THHHHHHCCC-------------------------------------TTS-----------
T ss_pred EEeeccccccc--------ccHHHhcCCC-------------------------------------Ccc-----------
Confidence 99999886543 1222222100 000
Q ss_pred HHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCH
Q psy2392 925 QIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNE 1004 (1165)
Q Consensus 925 ~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~ 1004 (1165)
. |... .
T Consensus 103 -------------------------~--------~~~~------------------~----------------------- 108 (311)
T 4fcw_A 103 -------------------------V--------GYEE------------------G----------------------- 108 (311)
T ss_dssp -------------------------T--------TTTT------------------C-----------------------
T ss_pred -------------------------c--------cccc------------------c-----------------------
Confidence 0 0000 0
Q ss_pred HHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeee-eeccCceEEEEecCCCCC--
Q psy2392 1005 DEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY-GIIKTDHILFIASGAFHL-- 1081 (1165)
Q Consensus 1005 ~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~-~~~~t~~ilfI~~gaf~~-- 1081 (1165)
..+ ..++.. ...+|+||||||++... +|..||.++|...+.... ..++..+++||+++....
T Consensus 109 ~~~-~~~~~~-~~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~ 173 (311)
T 4fcw_A 109 GQL-TEAVRR-RPYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPL 173 (311)
T ss_dssp CHH-HHHHHH-CSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHH
T ss_pred chH-HHHHHh-CCCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHH
Confidence 000 111111 14589999999999654 999999999976654321 245667888999977510
Q ss_pred --------CC------------CCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHH
Q psy2392 1082 --------AK------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG 1141 (1165)
Q Consensus 1082 --------~~------------p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~a 1141 (1165)
.. +..|.|+|.+||+..+.|.|++.+++.+|+. ..+.++...+...+..+.|++++
T Consensus 174 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~----~~l~~~~~~~~~~~~~~~~~~~~ 249 (311)
T 4fcw_A 174 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQMSYLRARLAEKRISLELTEAA 249 (311)
T ss_dssp HHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHTHHHHHHHHTTTCEEEECHHH
T ss_pred HHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHH----HHHHHHHHHHHhCCcEEEeCHHH
Confidence 00 2357899999999999999999999999999 66677777777778899999999
Q ss_pred HHHHHHHHhcc
Q psy2392 1142 IQRLAEIAYCI 1152 (1165)
Q Consensus 1142 i~~ia~~a~~~ 1152 (1165)
++.|+..++..
T Consensus 250 ~~~l~~~~~~~ 260 (311)
T 4fcw_A 250 KDFLAERGYDP 260 (311)
T ss_dssp HHHHHHHSCBT
T ss_pred HHHHHHhCCCc
Confidence 99999988854
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=219.69 Aligned_cols=180 Identities=25% Similarity=0.364 Sum_probs=141.0
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|++++++.|.+.+..+++...+...... .+|+++|||||||||||++|+++|+.++.+|+.++++++.++ |+|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk-~~G 257 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK-YIG 257 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS-SSS
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc-cch
Confidence 489999999999999999876655444322111 126999999999999999999999999999999999999998 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
++ +..++.+|..|..+
T Consensus 258 es-e~~ir~~F~~A~~~--------------------------------------------------------------- 273 (437)
T 4b4t_L 258 ES-ARIIREMFAYAKEH--------------------------------------------------------------- 273 (437)
T ss_dssp HH-HHHHHHHHHHHHHS---------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHHHhc---------------------------------------------------------------
Confidence 88 45688887666222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 274 -----------------------------------------------------------------------------~P~ 276 (437)
T 4b4t_L 274 -----------------------------------------------------------------------------EPC 276 (437)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCc
Confidence 578
Q ss_pred eeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1020 IIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
||||||||.|+..+.+. .+.+.....+-..||..|+|. -..+++++|+|+ +.|+.|.|+|+ |||.
T Consensus 277 IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~--------~~~~~vivI~AT----Nrp~~LDpAllRpGRfD 344 (437)
T 4b4t_L 277 IIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF--------DNLGQTKIIMAT----NRPDTLDPALLRPGRLD 344 (437)
T ss_dssp EEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS--------SCTTSSEEEEEE----SSTTSSCTTTTSTTSEE
T ss_pred eeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc--------cCCCCeEEEEec----CCchhhCHHHhCCCccc
Confidence 99999999999876432 122222222345678888863 345678888885 58999999997 5799
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..|+|+.++.++..+||+
T Consensus 345 ~~I~i~lPd~~~R~~Il~ 362 (437)
T 4b4t_L 345 RKVEIPLPNEAGRLEIFK 362 (437)
T ss_dssp EEECCCCCCHHHHHHHHH
T ss_pred eeeecCCcCHHHHHHHHH
Confidence 999999999999999998
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=215.58 Aligned_cols=181 Identities=22% Similarity=0.395 Sum_probs=139.8
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
-+++|+|++++|+.|.+.+..+++...+..... ..+|+++|||||||||||++|+++|+.++.+|+.++++++.++ |+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g-~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~-~~ 247 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIG-IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK-YL 247 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCS-SC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC-CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhcc-cc
Confidence 358999999999999999987654433322111 1126899999999999999999999999999999999999998 99
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|++ +..++++|..|..+
T Consensus 248 Ge~-e~~ir~lF~~A~~~-------------------------------------------------------------- 264 (428)
T 4b4t_K 248 GEG-PRMVRDVFRLAREN-------------------------------------------------------------- 264 (428)
T ss_dssp SHH-HHHHHHHHHHHHHT--------------------------------------------------------------
T ss_pred chh-HHHHHHHHHHHHHc--------------------------------------------------------------
Confidence 988 45688888766222
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
.+
T Consensus 265 ------------------------------------------------------------------------------aP 266 (428)
T 4b4t_K 265 ------------------------------------------------------------------------------AP 266 (428)
T ss_dssp ------------------------------------------------------------------------------CS
T ss_pred ------------------------------------------------------------------------------CC
Confidence 46
Q ss_pred CeeeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cC
Q psy2392 1019 GIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~ 1095 (1165)
+|+||||||.++..+.... +.+.....+-..||..++| .....++++||++ +.|+.+.|+|++ ||
T Consensus 267 ~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg--------~~~~~~v~vI~aT----N~~~~LD~AllRpGRf 334 (428)
T 4b4t_K 267 SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG--------FDQSTNVKVIMAT----NRADTLDPALLRPGRL 334 (428)
T ss_dssp EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH--------SCSSCSEEEEEEE----SCSSSCCHHHHSSSSE
T ss_pred CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC--------CCCCCCEEEEEec----CChhhcChhhhcCCcc
Confidence 8999999999998864322 2222222244567777775 3345678899886 589999999984 99
Q ss_pred CeEEEcC-CCCHHHHHHHHh
Q psy2392 1096 PIRVELD-SLSISDFTRIMT 1114 (1165)
Q Consensus 1096 ~i~v~l~-~l~~~~l~~il~ 1114 (1165)
...|+|+ .++.++...||+
T Consensus 335 d~~I~~p~lPd~~~R~~Il~ 354 (428)
T 4b4t_K 335 DRKIEFPSLRDRRERRLIFG 354 (428)
T ss_dssp EEEEECCSSCCHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 9999996 678999888887
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-19 Score=218.30 Aligned_cols=284 Identities=18% Similarity=0.238 Sum_probs=186.1
Q ss_pred HhhhccccCchhhhhhhhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHH
Q psy2392 155 ALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEI 234 (1165)
Q Consensus 155 ~l~~~t~l~~~~i~~~~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~l 234 (1165)
.+...+.+||.....+...+.++.+.|+++++|+++++..+...+... ..... . +..+++|+||||||||++
T Consensus 53 ~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~--~~~~~--~----~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 53 YIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQ--KLTKS--L----KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp HHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH--HHSSS--C----CSCEEEEESSSSSSHHHH
T ss_pred HHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHH--Hhccc--C----CCCEEEEECCCCCCHHHH
Confidence 344446788877776666677778889999999999999988766543 21111 1 246999999999999999
Q ss_pred HHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCcc
Q psy2392 235 ARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDT 314 (1165)
Q Consensus 235 Ak~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 314 (1165)
|+++|..++.++..++++.+... ..++..... .+
T Consensus 125 ar~ia~~l~~~~~~i~~~~~~~~-----------~~~~g~~~~-------------------------~i---------- 158 (543)
T 3m6a_A 125 AKSIAKSLGRKFVRISLGGVRDE-----------SEIRGHRRT-------------------------YV---------- 158 (543)
T ss_dssp HHHHHHHHTCEEEEECCCC-------------------------------------------------------------
T ss_pred HHHHHHhcCCCeEEEEecccchh-----------hhhhhHHHH-------------------------Hh----------
Confidence 99999999999999998764321 111111000 00
Q ss_pred ccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHH
Q psy2392 315 DFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKL 394 (1165)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1165)
| .+...+.+.|
T Consensus 159 ---------------------g---------------------------~~~~~~~~~~--------------------- 169 (543)
T 3m6a_A 159 ---------------------G---------------------------AMPGRIIQGM--------------------- 169 (543)
T ss_dssp -----------------------------------------------------CHHHHH---------------------
T ss_pred ---------------------c---------------------------cCchHHHHHH---------------------
Confidence 0 0000000000
Q ss_pred HHHHHHHhhcChhHHHHHHHhhh-ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceee---eece--ee
Q psy2392 395 LIDEEANKLLNEDEIQQKAINNV-EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN---TKYG--II 468 (1165)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~a~~~~-~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~---~~~~--~~ 468 (1165)
..+ ..++|+||||||++.+..++ .+|..||.++|..... ..+. .+
T Consensus 170 --------------------~~a~~~~~vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~ 220 (543)
T 3m6a_A 170 --------------------KKAGKLNPVFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETF 220 (543)
T ss_dssp --------------------HTTCSSSEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCC
T ss_pred --------------------HHhhccCCEEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeee
Confidence 111 14569999999999876432 2567899999864322 2222 34
Q ss_pred cCceEEEEEeCCcccCCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHH
Q psy2392 469 KTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLA 548 (1165)
Q Consensus 469 ~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la 548 (1165)
+..+++||+|. +.++.+.|+|++||.+ +.|.+|+.++..+|+. ..++.++.+........+.+++++++.|+
T Consensus 221 ~~~~v~iI~tt----N~~~~l~~aL~~R~~v-i~~~~~~~~e~~~Il~---~~l~~~~~~~~~~~~~~i~i~~~~l~~l~ 292 (543)
T 3m6a_A 221 DLSKVLFIATA----NNLATIPGPLRDRMEI-INIAGYTEIEKLEIVK---DHLLPKQIKEHGLKKSNLQLRDQAILDII 292 (543)
T ss_dssp BCSSCEEEEEC----SSTTTSCHHHHHHEEE-EECCCCCHHHHHHHHH---HTHHHHHHHHTTCCGGGCEECHHHHHHHH
T ss_pred cccceEEEecc----CccccCCHHHHhhcce-eeeCCCCHHHHHHHHH---HHHHHHHHHHcCCCcccccCCHHHHHHHH
Confidence 55789999885 4577899999999974 7999999999999996 44444333322222237899999999998
Q ss_pred HHHHhccccCCccCcchhHHHHHHHHHHhhcccCCC---eeEEcccccccccccCcccc
Q psy2392 549 EIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNI---SLLVDADYVNSRLGDLSINE 604 (1165)
Q Consensus 549 ~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~---~~~i~~~~v~~~~~~~~~~~ 604 (1165)
+ .|. ...|+|.|++.|++++......+... .+.||.+.+++.++......
T Consensus 293 ~-~~~-----~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~~~~~ 345 (543)
T 3m6a_A 293 R-YYT-----REAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKRIFRY 345 (543)
T ss_dssp H-HHC-----CCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSCCSCC
T ss_pred H-hCC-----hhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCcccCc
Confidence 8 443 25899999999999987766543322 27899999999888765433
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=194.95 Aligned_cols=217 Identities=19% Similarity=0.327 Sum_probs=163.4
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh-CCCceEEecccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i~ld~s~~~~~Gyv 260 (1165)
.++|+|++++++.|.+++..+.++..+..+... ++.++||+||||||||++|+++|+.+ +.+|+.++++++.+. |+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~--~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~-~~ 87 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRT--PWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WL 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCC--CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS-SC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCC--CCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh-hh
Confidence 358999999999999999888777777654322 35899999999999999999999999 899999999998764 88
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|.. +..++.+|..+
T Consensus 88 g~~-~~~~~~lf~~a----------------------------------------------------------------- 101 (322)
T 1xwi_A 88 GES-EKLVKNLFQLA----------------------------------------------------------------- 101 (322)
T ss_dssp CSC-HHHHHHHHHHH-----------------------------------------------------------------
T ss_pred hHH-HHHHHHHHHHH-----------------------------------------------------------------
Confidence 876 44455555441
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
. ...+
T Consensus 102 -------------------------------------------------------------------------~--~~~~ 106 (322)
T 1xwi_A 102 -------------------------------------------------------------------------R--ENKP 106 (322)
T ss_dssp -------------------------------------------------------------------------H--HTSS
T ss_pred -------------------------------------------------------------------------H--hcCC
Confidence 0 0147
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCee
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 500 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~ 500 (1165)
+||||||||.+++.+.... .+ ....+++.||..++|.. ....++++|+++ +.|..+.|+|++||+.+
T Consensus 107 ~vl~iDEid~l~~~~~~~~-~~-~~~~~~~~ll~~ld~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~ 173 (322)
T 1xwi_A 107 SIIFIDEIDSLCGSRSENE-SE-AARRIKTEFLVQMQGVG-------VDNDGILVLGAT----NIPWVLDSAIRRRFEKR 173 (322)
T ss_dssp EEEEEETTTGGGCCSSSCC-TT-HHHHHHHHHHHHHHCSS-------SCCTTEEEEEEE----SCTTTSCHHHHHTCCEE
T ss_pred cEEEeecHHHhcccccccc-ch-HHHHHHHHHHHHHhccc-------ccCCCEEEEEec----CCcccCCHHHHhhcCeE
Confidence 8999999999998765421 12 23346778888888732 134678888885 67889999999999999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
+.+..++.++..+|++ ..+. +..+.+++..++.|++.+. ++-.+-|..++.....
T Consensus 174 i~i~~P~~~~r~~il~-----------~~l~--~~~~~l~~~~l~~la~~t~-------G~sgadl~~l~~~A~~ 228 (322)
T 1xwi_A 174 IYIPLPEPHARAAMFK-----------LHLG--TTQNSLTEADFRELGRKTD-------GYSGADISIIVRDALM 228 (322)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHT--TCCBCCCHHHHHHHHHTCT-------TCCHHHHHHHHHHHHT
T ss_pred EEeCCcCHHHHHHHHH-----------HHHh--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 9999999999999984 1222 3344568899999988663 4555677777766553
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=196.67 Aligned_cols=200 Identities=21% Similarity=0.359 Sum_probs=150.5
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc-CCCeEEEecCCccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~~se~~~~Gyv 858 (1165)
+++|+|++++++.|.+.+..+.+...+..+.. .+++++||+||||||||++|+++|+.+ +.+|+.++++++.+. |+
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~--~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~-~~ 87 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKR--TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WL 87 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTC--CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCS-SC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCC--CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhh-hh
Confidence 57999999999999999987766665554322 235899999999999999999999999 899999999999887 88
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|.. +..++.+|..+..
T Consensus 88 g~~-~~~~~~lf~~a~~--------------------------------------------------------------- 103 (322)
T 1xwi_A 88 GES-EKLVKNLFQLARE--------------------------------------------------------------- 103 (322)
T ss_dssp CSC-HHHHHHHHHHHHH---------------------------------------------------------------
T ss_pred hHH-HHHHHHHHHHHHh---------------------------------------------------------------
Confidence 877 3456666544310
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
.++
T Consensus 104 -----------------------------------------------------------------------------~~~ 106 (322)
T 1xwi_A 104 -----------------------------------------------------------------------------NKP 106 (322)
T ss_dssp -----------------------------------------------------------------------------TSS
T ss_pred -----------------------------------------------------------------------------cCC
Confidence 146
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
+||||||||.++...... ..+. ...++..||..++|.. ....++++|+++ +.|+.+.|.|++||+.+
T Consensus 107 ~vl~iDEid~l~~~~~~~-~~~~-~~~~~~~ll~~ld~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~ 173 (322)
T 1xwi_A 107 SIIFIDEIDSLCGSRSEN-ESEA-ARRIKTEFLVQMQGVG-------VDNDGILVLGAT----NIPWVLDSAIRRRFEKR 173 (322)
T ss_dssp EEEEEETTTGGGCCSSSC-CTTH-HHHHHHHHHHHHHCSS-------SCCTTEEEEEEE----SCTTTSCHHHHHTCCEE
T ss_pred cEEEeecHHHhccccccc-cchH-HHHHHHHHHHHHhccc-------ccCCCEEEEEec----CCcccCCHHHHhhcCeE
Confidence 799999999998775432 1122 2346778888888632 134678888886 57889999999999999
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.++.++.++..+||+ .+++..+. .++++.++.||+.+
T Consensus 174 i~i~~P~~~~r~~il~-----------~~l~~~~~--~l~~~~l~~la~~t 211 (322)
T 1xwi_A 174 IYIPLPEPHARAAMFK-----------LHLGTTQN--SLTEADFRELGRKT 211 (322)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHTTCCB--CCCHHHHHHHHHTC
T ss_pred EEeCCcCHHHHHHHHH-----------HHHhcCCC--CCCHHHHHHHHHHc
Confidence 9999999999999998 22332232 44566666666543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=195.13 Aligned_cols=201 Identities=18% Similarity=0.334 Sum_probs=148.3
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.|...+..+.+...+..... .++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~~g 93 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMG 93 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTC--CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT-TGG
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCC--CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc-ccc
Confidence 47899999999999999987655554443322 235899999999999999999999999999999999998776 777
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
.. +..++.+|..+.
T Consensus 94 ~~-~~~~~~~f~~a~----------------------------------------------------------------- 107 (322)
T 3eie_A 94 ES-EKLVKQLFAMAR----------------------------------------------------------------- 107 (322)
T ss_dssp GH-HHHHHHHHHHHH-----------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHHH-----------------------------------------------------------------
Confidence 65 344555554330
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
..+++
T Consensus 108 ---------------------------------------------------------------------------~~~~~ 112 (322)
T 3eie_A 108 ---------------------------------------------------------------------------ENKPS 112 (322)
T ss_dssp ---------------------------------------------------------------------------HTSSE
T ss_pred ---------------------------------------------------------------------------hcCCe
Confidence 01468
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
||||||||.+....... ..+ ....++..||..+++.. ....++++|++. +.|+.+.|.|++||...+
T Consensus 113 vl~iDEid~l~~~~~~~-~~~-~~~~~~~~ll~~l~~~~-------~~~~~v~vi~at----n~~~~ld~al~~Rf~~~i 179 (322)
T 3eie_A 113 IIFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNGVG-------NDSQGVLVLGAT----NIPWQLDSAIRRRFERRI 179 (322)
T ss_dssp EEEEECGGGGSCC-------C-CTHHHHHHHHHHHGGGG-------TSCCCEEEEEEE----SCGGGSCHHHHHHCCEEE
T ss_pred EEEechhhhhhccCCCC-cch-HHHHHHHHHHHHhcccc-------ccCCceEEEEec----CChhhCCHHHHcccCeEE
Confidence 99999999998765321 122 23347888998888632 134568888886 478899999999999999
Q ss_pred EcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1100 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1100 ~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.++.++.++..+||+ .+++..+ +.++++.++.||+.+.
T Consensus 180 ~~~~p~~~~r~~il~-----------~~~~~~~--~~~~~~~l~~la~~t~ 217 (322)
T 3eie_A 180 YIPLPDLAARTTMFE-----------INVGDTP--CVLTKEDYRTLGAMTE 217 (322)
T ss_dssp ECCCCCHHHHHHHHH-----------HHHTTCC--CCCCHHHHHHHHHTTT
T ss_pred EeCCCCHHHHHHHHH-----------HHhccCC--CCCCHHHHHHHHHHcC
Confidence 999999999999998 2333333 3556777777776543
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=193.43 Aligned_cols=215 Identities=17% Similarity=0.338 Sum_probs=157.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+++..+.++..+...... ++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~--~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~~g~ 94 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRK--PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMGE 94 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCC--CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT-TGGG
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCC--CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc-ccch
Confidence 47999999999999999877666655444322 35899999999999999999999999999999999988664 7765
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.+|..+
T Consensus 95 ~-~~~~~~~f~~a------------------------------------------------------------------- 106 (322)
T 3eie_A 95 S-EKLVKQLFAMA------------------------------------------------------------------- 106 (322)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 33344444331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 107 -----------------------------------------------------------------------~--~~~~~v 113 (322)
T 3eie_A 107 -----------------------------------------------------------------------R--ENKPSI 113 (322)
T ss_dssp -----------------------------------------------------------------------H--HTSSEE
T ss_pred -----------------------------------------------------------------------H--hcCCeE
Confidence 0 014789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+...+... ..+ ....++..||..+++.. -...++++|+++ +.|..+.|+|++||+..+.
T Consensus 114 l~iDEid~l~~~~~~~-~~~-~~~~~~~~ll~~l~~~~-------~~~~~v~vi~at----n~~~~ld~al~~Rf~~~i~ 180 (322)
T 3eie_A 114 IFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNGVG-------NDSQGVLVLGAT----NIPWQLDSAIRRRFERRIY 180 (322)
T ss_dssp EEEECGGGGSCC-------C-CTHHHHHHHHHHHGGGG-------TSCCCEEEEEEE----SCGGGSCHHHHHHCCEEEE
T ss_pred EEechhhhhhccCCCC-cch-HHHHHHHHHHHHhcccc-------ccCCceEEEEec----CChhhCCHHHHcccCeEEE
Confidence 9999999998865431 112 23457788898888632 124568888884 5788899999999999999
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+..++.++..+|++ ..+. +..+.++++.++.|++.+. ++-.+-|..++....
T Consensus 181 ~~~p~~~~r~~il~-----------~~~~--~~~~~~~~~~l~~la~~t~-------g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 181 IPLPDLAARTTMFE-----------INVG--DTPCVLTKEDYRTLGAMTE-------GYSGSDIAVVVKDAL 232 (322)
T ss_dssp CCCCCHHHHHHHHH-----------HHHT--TCCCCCCHHHHHHHHHTTT-------TCCHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHH-----------HHhc--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 99999999999984 1222 3445678999999988763 344566777766543
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=192.70 Aligned_cols=229 Identities=16% Similarity=0.247 Sum_probs=158.9
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhh-----hhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC---
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRW-----RRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--- 243 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~-----~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~--- 243 (1165)
..+.++...|+++|+||+.+++.+.+.+...+ .+.|+... ..+.++||+||||||||++|+++|+.++
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~----~~~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE----TPTLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS----CCCCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC----CCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45678888899899999999999998765432 12333332 1246899999999999999999999983
Q ss_pred ----CCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCc
Q psy2392 244 ----APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE 319 (1165)
Q Consensus 244 ----~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 319 (1165)
.+++.++++++... |.|.... .+..++..
T Consensus 96 ~~~~~~~~~~~~~~l~~~-~~g~~~~-~~~~~~~~--------------------------------------------- 128 (309)
T 3syl_A 96 YVRKGHLVSVTRDDLVGQ-YIGHTAP-KTKEVLKR--------------------------------------------- 128 (309)
T ss_dssp SSSSCCEEEECGGGTCCS-STTCHHH-HHHHHHHH---------------------------------------------
T ss_pred CcCCCcEEEEcHHHhhhh-cccccHH-HHHHHHHh---------------------------------------------
Confidence 37888998887543 5554421 11111111
Q ss_pred CcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHH
Q psy2392 320 NNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEE 399 (1165)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1165)
T Consensus 129 -------------------------------------------------------------------------------- 128 (309)
T 3syl_A 129 -------------------------------------------------------------------------------- 128 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeC
Q psy2392 400 ANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASG 479 (1165)
Q Consensus 400 ~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~g 479 (1165)
+ .++||||||||.+.....+ +.....++..|+.++|.. ..++.+|+++
T Consensus 129 -----------------~-~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~----------~~~~~~i~~~ 176 (309)
T 3syl_A 129 -----------------A-MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN----------RDDLVVILAG 176 (309)
T ss_dssp -----------------H-TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC----------TTTCEEEEEE
T ss_pred -----------------c-CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC----------CCCEEEEEeC
Confidence 1 4679999999999865432 122345788999999852 3566788876
Q ss_pred Cccc-CCCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 480 AFHL-AKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 480 af~~-~~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
+... .....+.|.|++||+..|.|++++.+++.+|+. .. +...+ +.+++++++.+++.+.......
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~----~~-------l~~~~--~~~~~~~~~~l~~~~~~~~~~~ 243 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAG----HM-------LDDQN--YQMTPEAETALRAYIGLRRNQP 243 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHH----HH-------HHHTT--CEECHHHHHHHHHHHHHHTTSS
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHH----HH-------HHHcC--CCCCHHHHHHHHHHHHHhccCC
Confidence 4221 001124599999999999999999999999994 22 22334 5789999999999875432222
Q ss_pred CccCcchhHHHHHHHHHH
Q psy2392 559 ENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 559 ~~~GAR~l~~~ie~~l~~ 576 (1165)
..+.+|.|++++++++..
T Consensus 244 ~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 244 HFANARSIRNALDRARLR 261 (309)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHH
Confidence 234499999999998754
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=191.35 Aligned_cols=218 Identities=17% Similarity=0.329 Sum_probs=155.3
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.|..++..+.++..+...... ++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~--~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~-~~g~ 127 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRK--PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WMGE 127 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCC--CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC-C---
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCC--CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh-hcch
Confidence 58999999999999998876666655543221 34799999999999999999999999999999999987653 7766
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.+|..+
T Consensus 128 ~-~~~~~~~f~~a------------------------------------------------------------------- 139 (355)
T 2qp9_X 128 S-EKLVKQLFAMA------------------------------------------------------------------- 139 (355)
T ss_dssp C-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 33344444331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 140 -----------------------------------------------------------------------~--~~~~~v 146 (355)
T 2qp9_X 140 -----------------------------------------------------------------------R--ENKPSI 146 (355)
T ss_dssp -----------------------------------------------------------------------H--HTSSEE
T ss_pred -----------------------------------------------------------------------H--HcCCeE
Confidence 0 014789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+...+... ..+ ....+++.||..++|.. ....+++||+++ +.|..+.|+|++||+..+.
T Consensus 147 l~iDEid~l~~~r~~~-~~~-~~~~~~~~ll~~l~~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~i~ 213 (355)
T 2qp9_X 147 IFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNGVG-------NDSQGVLVLGAT----NIPWQLDSAIRRRFERRIY 213 (355)
T ss_dssp EEEECGGGGTC-------CT-HHHHHHHHHHHHHHHCC----------CCEEEEEEE----SCGGGSCHHHHHTCCEEEE
T ss_pred EEEechHhhcccCCCC-cch-HHHHHHHHHHHHhhccc-------ccCCCeEEEeec----CCcccCCHHHHcccCEEEE
Confidence 9999999998765431 112 23446778888888632 123568888884 5678899999999999999
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
+..++.++..+|+. ..+. +..+.+++..++.|++.+. ++-.|-|..++..++...
T Consensus 214 i~~P~~~~r~~il~-----------~~l~--~~~~~~~~~~l~~la~~t~-------G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 214 IPLPDLAARTTMFE-----------INVG--DTPSVLTKEDYRTLGAMTE-------GYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp CCCCCHHHHHHHHH-----------HHHT--TSCBCCCHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHH-----------HHHh--hCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHH
Confidence 99999999999984 1222 2334578999999998773 345677888887765443
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=195.52 Aligned_cols=216 Identities=20% Similarity=0.342 Sum_probs=154.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh-CCCceEEeccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i~ld~s~~~~~GyvG 261 (1165)
++|+|++.+++.|.+++..+.++..+..... .++.++||+||||||||++|+++|+.+ +.+|+.++++++.+. |+|
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~--~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~-~~g 210 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKR--TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WLG 210 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGG--CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccC--CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh-hcc
Confidence 5799999999999999877666655544322 134899999999999999999999999 899999999988764 777
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.. +..++.+|..+
T Consensus 211 ~~-~~~~~~~f~~a------------------------------------------------------------------ 223 (444)
T 2zan_A 211 ES-EKLVKNLFQLA------------------------------------------------------------------ 223 (444)
T ss_dssp -C-CCTHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 65 33344444331
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
. ...++
T Consensus 224 ------------------------------------------------------------------------~--~~~~~ 229 (444)
T 2zan_A 224 ------------------------------------------------------------------------R--ENKPS 229 (444)
T ss_dssp ------------------------------------------------------------------------H--HSCSE
T ss_pred ------------------------------------------------------------------------H--HcCCe
Confidence 0 01478
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeE
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 501 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v 501 (1165)
||||||||.+++.+... ..+ ....+++.||..++|.. ....+++||+++ +.|..+.|+|++||+.++
T Consensus 230 vl~iDEid~l~~~~~~~-~~~-~~~~~~~~lL~~l~~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~i 296 (444)
T 2zan_A 230 IIFIDEIDSLCGSRSEN-ESE-AARRIKTEFLVQMQGVG-------VDNDGILVLGAT----NIPWVLDSAIRRRFEKRI 296 (444)
T ss_dssp EEEESCTTTTCCCSSCC-CCG-GGHHHHHHHHTTTTCSS-------CCCSSCEEEEEE----SCGGGSCHHHHTTCCEEE
T ss_pred EEEEechHhhccCCCCc-ccc-HHHHHHHHHHHHHhCcc-------cCCCCEEEEecC----CCccccCHHHHhhcceEE
Confidence 99999999998775542 122 23357788999998732 134678888885 567889999999999999
Q ss_pred ecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 502 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 502 ~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
.+..++.++...|+. ..+. +..+.+++..++.|++.+. ++-.+-|..++...+.
T Consensus 297 ~i~~P~~~~r~~il~-----------~~l~--~~~~~l~~~~l~~la~~t~-------G~sgadl~~l~~~a~~ 350 (444)
T 2zan_A 297 YIPLPEAHARAAMFR-----------LHLG--STQNSLTEADFQELGRKTD-------GYSGADISIIVRDALM 350 (444)
T ss_dssp ECCCCCHHHHHHHHH-----------HHHT--TSCEECCHHHHHHHHHHTT-------TCCHHHHHHHHHHHHT
T ss_pred EeCCcCHHHHHHHHH-----------HHHh--cCCCCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHHHH
Confidence 999999999999984 1222 3445678999999998773 4556778777776653
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=196.40 Aligned_cols=201 Identities=21% Similarity=0.347 Sum_probs=142.4
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc-CCCeEEEecCCccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~~se~~~~Gyv 858 (1165)
+++|+|++.+++.|...+..+.+...+..... .++.++||+||||||||++|+++|+.+ +.+|+.++++++.+. |+
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~--~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~-~~ 209 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKR--TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK-WL 209 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGG--CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC--------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccC--CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh-hc
Confidence 47899999999999999876655444433211 235899999999999999999999999 899999999998876 88
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|... ..++.+|..+.
T Consensus 210 g~~~-~~~~~~f~~a~---------------------------------------------------------------- 224 (444)
T 2zan_A 210 GESE-KLVKNLFQLAR---------------------------------------------------------------- 224 (444)
T ss_dssp --CC-CTHHHHHHHHH----------------------------------------------------------------
T ss_pred chHH-HHHHHHHHHHH----------------------------------------------------------------
Confidence 7763 34555554330
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
..++
T Consensus 225 ----------------------------------------------------------------------------~~~~ 228 (444)
T 2zan_A 225 ----------------------------------------------------------------------------ENKP 228 (444)
T ss_dssp ----------------------------------------------------------------------------HSCS
T ss_pred ----------------------------------------------------------------------------HcCC
Confidence 0156
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
+||||||||.++...... ..+. ...++..||..++|.. ....+++||+++ +.|+.+.|.|++||+.+
T Consensus 229 ~vl~iDEid~l~~~~~~~-~~~~-~~~~~~~lL~~l~~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~ 295 (444)
T 2zan_A 229 SIIFIDEIDSLCGSRSEN-ESEA-ARRIKTEFLVQMQGVG-------VDNDGILVLGAT----NIPWVLDSAIRRRFEKR 295 (444)
T ss_dssp EEEEESCTTTTCCCSSCC-CCGG-GHHHHHHHHTTTTCSS-------CCCSSCEEEEEE----SCGGGSCHHHHTTCCEE
T ss_pred eEEEEechHhhccCCCCc-cccH-HHHHHHHHHHHHhCcc-------cCCCCEEEEecC----CCccccCHHHHhhcceE
Confidence 899999999998765432 1222 2347888999888732 134678899886 47888999999999999
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.++.++.++...|++ .++... .+.+++..+..||+.+.
T Consensus 296 i~i~~P~~~~r~~il~-----------~~l~~~--~~~l~~~~l~~la~~t~ 334 (444)
T 2zan_A 296 IYIPLPEAHARAAMFR-----------LHLGST--QNSLTEADFQELGRKTD 334 (444)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHTTS--CEECCHHHHHHHHHHTT
T ss_pred EEeCCcCHHHHHHHHH-----------HHHhcC--CCCCCHHHHHHHHHHcC
Confidence 9999999999999988 223333 33567777777777653
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=191.05 Aligned_cols=202 Identities=18% Similarity=0.328 Sum_probs=143.1
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
-+++|+|++.+++.|..++..+.+...+..... .++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~--~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~-~~ 125 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR--KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK-WM 125 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSC--CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC-C-
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCC--CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh-hc
Confidence 357899999999999999876655444433321 225789999999999999999999999999999999988776 77
Q ss_pred ccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCC
Q psy2392 859 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 938 (1165)
Q Consensus 859 G~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~ 938 (1165)
|.. +..++.+|..+.
T Consensus 126 g~~-~~~~~~~f~~a~---------------------------------------------------------------- 140 (355)
T 2qp9_X 126 GES-EKLVKQLFAMAR---------------------------------------------------------------- 140 (355)
T ss_dssp --C-HHHHHHHHHHHH----------------------------------------------------------------
T ss_pred chH-HHHHHHHHHHHH----------------------------------------------------------------
Confidence 765 334555543330
Q ss_pred eEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcC
Q psy2392 939 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 1018 (1165)
Q Consensus 939 r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~ 1018 (1165)
...+
T Consensus 141 ----------------------------------------------------------------------------~~~~ 144 (355)
T 2qp9_X 141 ----------------------------------------------------------------------------ENKP 144 (355)
T ss_dssp ----------------------------------------------------------------------------HTSS
T ss_pred ----------------------------------------------------------------------------HcCC
Confidence 0146
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
+||||||||.+....... ..+ ....++..||..++|.. ....+++||++. +.|+.+.|.|++||..+
T Consensus 145 ~vl~iDEid~l~~~r~~~-~~~-~~~~~~~~ll~~l~~~~-------~~~~~v~vI~at----n~~~~ld~al~rRf~~~ 211 (355)
T 2qp9_X 145 SIIFIDQVDALTGTRGEG-ESE-ASRRIKTELLVQMNGVG-------NDSQGVLVLGAT----NIPWQLDSAIRRRFERR 211 (355)
T ss_dssp EEEEEECGGGGTC-------CT-HHHHHHHHHHHHHHHCC----------CCEEEEEEE----SCGGGSCHHHHHTCCEE
T ss_pred eEEEEechHhhcccCCCC-cch-HHHHHHHHHHHHhhccc-------ccCCCeEEEeec----CCcccCCHHHHcccCEE
Confidence 899999999998764321 112 22346788888888632 123568888886 46888999999999999
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.+..++.++..+||+ .++...+. .+++..++.||+.+.
T Consensus 212 i~i~~P~~~~r~~il~-----------~~l~~~~~--~~~~~~l~~la~~t~ 250 (355)
T 2qp9_X 212 IYIPLPDLAARTTMFE-----------INVGDTPS--VLTKEDYRTLGAMTE 250 (355)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHTTSCB--CCCHHHHHHHHHHTT
T ss_pred EEeCCcCHHHHHHHHH-----------HHHhhCCC--CCCHHHHHHHHHHcC
Confidence 9999999999999998 23333332 456777777776653
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=199.79 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=86.3
Q ss_pred cCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHH
Q psy2392 626 RGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELAKEW 700 (1165)
Q Consensus 626 RG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS~ry 700 (1165)
+|.++||||||..+|+++++.|+++.|| |+ .|. +.+|+.+++..||+++...|+.||+ +++.+++.++.+|
T Consensus 289 ~g~v~vI~at~~~e~~~~~~~~~al~~R--f~-~i~-v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~ 364 (468)
T 3pxg_A 289 RGELQCIGATTLDEYRKYIEKDAALERR--FQ-PIQ-VDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (468)
T ss_dssp SSSCEEEEECCTTTTHHHHTTCSHHHHS--EE-EEE-CCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCHHHHHHHhhcCHHHHHh--Cc-cce-eCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999 99 555 9999999999999999999999998 9999999999999
Q ss_pred hcccccchH--HHHhhhhhhhhhhhhcCCCC
Q psy2392 701 RNDRTLRRL--EAMLLTANRETTLIITGNGD 729 (1165)
Q Consensus 701 i~~R~lPDk--dlid~a~a~~~~~~~s~~~~ 729 (1165)
+.+|++||+ ++++.+++..+....+.+..
T Consensus 365 ~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~ 395 (468)
T 3pxg_A 365 ISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN 395 (468)
T ss_dssp SCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred hccCcCCcHHHHHHHHHHHHHHhccCCCchH
Confidence 999999996 55777777666543333333
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=186.42 Aligned_cols=201 Identities=25% Similarity=0.418 Sum_probs=142.9
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.|.+.+..++....+..... ..+.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~-~~g 159 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR--GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVG 159 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS-STT
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhcc--CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc-ccc
Confidence 37899999999999999876544443332211 235899999999999999999999999999999999998776 766
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
.. ...++.+|..+
T Consensus 160 ~~-~~~~~~~~~~a------------------------------------------------------------------ 172 (357)
T 3d8b_A 160 EG-EKMVRALFAVA------------------------------------------------------------------ 172 (357)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 54 22333333222
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+ ..+++
T Consensus 173 ---------------------------------------------------------------------~-----~~~~~ 178 (357)
T 3d8b_A 173 ---------------------------------------------------------------------R-----CQQPA 178 (357)
T ss_dssp ---------------------------------------------------------------------H-----HTCSE
T ss_pred ---------------------------------------------------------------------H-----hcCCe
Confidence 0 11468
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRV 1099 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v 1099 (1165)
||||||||.+...... +.......+|..||..++|.... ...+++||+++ +.|..+.|.|++||..++
T Consensus 179 vl~iDEid~l~~~~~~--~~~~~~~~~~~~lL~~l~~~~~~------~~~~v~vI~at----n~~~~l~~~l~~Rf~~~i 246 (357)
T 3d8b_A 179 VIFIDEIDSLLSQRGD--GEHESSRRIKTEFLVQLDGATTS------SEDRILVVGAT----NRPQEIDEAARRRLVKRL 246 (357)
T ss_dssp EEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----------CCCCEEEEEEE----SCGGGBCHHHHTTCCEEE
T ss_pred EEEEeCchhhhccCCC--CcchHHHHHHHHHHHHHhccccc------CCCCEEEEEec----CChhhCCHHHHhhCceEE
Confidence 9999999999876432 11223345788899999874321 23578888886 467789999999999999
Q ss_pred EcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1100 ELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1100 ~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+..++.++..+|+. .++..+++ .+++++++.|++.+
T Consensus 247 ~i~~p~~~~r~~il~-----------~~~~~~~~--~l~~~~l~~la~~t 283 (357)
T 3d8b_A 247 YIPLPEASARKQIVI-----------NLMSKEQC--CLSEEEIEQIVQQS 283 (357)
T ss_dssp ECCCCCHHHHHHHHH-----------HHHHTSCB--CCCHHHHHHHHHHT
T ss_pred EeCCcCHHHHHHHHH-----------HHHhhcCC--CccHHHHHHHHHHc
Confidence 999999999999987 23333343 46677777776654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=184.35 Aligned_cols=206 Identities=17% Similarity=0.275 Sum_probs=146.4
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHh-----hhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRW-----RRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN-- 841 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~-----~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~-- 841 (1165)
.....++...|+++|+|++.+++.+...+...+ .+.|+... ..+.++||+||||||||++|+++|+.++
T Consensus 19 ~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~----~~~~~vll~G~~GtGKT~la~~la~~l~~~ 94 (309)
T 3syl_A 19 GSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE----TPTLHMSFTGNPGTGKTTVALKMAGLLHRL 94 (309)
T ss_dssp HTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS----CCCCEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC----CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 445677888898899999999999998776432 23343332 2247899999999999999999999983
Q ss_pred -----CCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCC
Q psy2392 842 -----APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNN 916 (1165)
Q Consensus 842 -----~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~ 916 (1165)
.+++.++++++... |.|.... .+..+|
T Consensus 95 ~~~~~~~~~~~~~~~l~~~-~~g~~~~-~~~~~~---------------------------------------------- 126 (309)
T 3syl_A 95 GYVRKGHLVSVTRDDLVGQ-YIGHTAP-KTKEVL---------------------------------------------- 126 (309)
T ss_dssp TSSSSCCEEEECGGGTCCS-STTCHHH-HHHHHH----------------------------------------------
T ss_pred CCcCCCcEEEEcHHHhhhh-cccccHH-HHHHHH----------------------------------------------
Confidence 38899998887655 6654421 122211
Q ss_pred cccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHH
Q psy2392 917 ENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDE 996 (1165)
Q Consensus 917 ~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~ 996 (1165)
T Consensus 127 -------------------------------------------------------------------------------- 126 (309)
T 3syl_A 127 -------------------------------------------------------------------------------- 126 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEec
Q psy2392 997 EANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIAS 1076 (1165)
Q Consensus 997 ~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~ 1076 (1165)
+.+ ..+|+||||||.+.....+ +.....+|..|+.++|.. ..++.||++
T Consensus 127 ------------~~~-----~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~----------~~~~~~i~~ 175 (309)
T 3syl_A 127 ------------KRA-----MGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENN----------RDDLVVILA 175 (309)
T ss_dssp ------------HHH-----TTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC----------TTTCEEEEE
T ss_pred ------------Hhc-----CCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcC----------CCCEEEEEe
Confidence 111 4689999999999865322 122345889999999853 356678888
Q ss_pred CCCCC-CCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1077 GAFHL-AKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1077 gaf~~-~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|.... .....+.|.|.+||+..++|++++.+++.+|++ ..+...++ .+++++++.|+..+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~-----------~~l~~~~~--~~~~~~~~~l~~~~~ 237 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAG-----------HMLDDQNY--QMTPEAETALRAYIG 237 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHH-----------HHHHHTTC--EECHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHHH
Confidence 65221 000123599999999999999999999999998 33344454 789999999998765
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.3e-17 Score=189.37 Aligned_cols=202 Identities=24% Similarity=0.382 Sum_probs=138.9
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+...+........+..... ..+.++||+||||||||++|+++|+.++.+|+.++++++... |+|.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~~g~ 191 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLR--APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK-YVGE 191 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccC--CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc-ccch
Confidence 6899999999999999876544333332222 125799999999999999999999999999999999998876 7776
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++.+|..+.
T Consensus 192 ~~-~~~~~~~~~a~------------------------------------------------------------------ 204 (389)
T 3vfd_A 192 GE-KLVRALFAVAR------------------------------------------------------------------ 204 (389)
T ss_dssp CH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 63 33444443330
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
..+++|
T Consensus 205 --------------------------------------------------------------------------~~~~~i 210 (389)
T 3vfd_A 205 --------------------------------------------------------------------------ELQPSI 210 (389)
T ss_dssp --------------------------------------------------------------------------HSSSEE
T ss_pred --------------------------------------------------------------------------hcCCeE
Confidence 014689
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 1100 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~ 1100 (1165)
|||||||.+...... +.......+|..||..++|... ....+++||++.. .|+.+.|.|++||...+.
T Consensus 211 l~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~l~~~~~------~~~~~v~vI~atn----~~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 211 IFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQS------AGDDRVLVMGATN----RPQELDEAVLRRFIKRVY 278 (389)
T ss_dssp EEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----------CEEEEEEES----CGGGCCHHHHTTCCEEEE
T ss_pred EEEECchhhcccCCC--ccchHHHHHHHHHHHHhhcccc------cCCCCEEEEEecC----CchhcCHHHHcCcceEEE
Confidence 999999999776432 1112234588889999886322 1235788888864 678899999999998899
Q ss_pred cCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1101 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1101 l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
|..++.++..+|+. .++..+++ .++++++..|++.+..
T Consensus 279 i~~p~~~~r~~il~-----------~~~~~~~~--~l~~~~~~~la~~~~g 316 (389)
T 3vfd_A 279 VSLPNEETRLLLLK-----------NLLCKQGS--PLTQKELAQLARMTDG 316 (389)
T ss_dssp CCCCCHHHHHHHHH-----------HHHTTSCC--CSCHHHHHHHHHHTTT
T ss_pred cCCcCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHcCC
Confidence 99999999999988 34444454 5677777777776543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=183.86 Aligned_cols=216 Identities=23% Similarity=0.384 Sum_probs=153.1
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+..++++..+..... ..+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~-~~g~ 160 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLR--GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK-WVGE 160 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG--SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS-STTH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhcc--CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc-ccch
Confidence 4799999999999999887655554433222 235799999999999999999999999999999999988663 6654
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.++..+
T Consensus 161 ~-~~~~~~~~~~a------------------------------------------------------------------- 172 (357)
T 3d8b_A 161 G-EKMVRALFAVA------------------------------------------------------------------- 172 (357)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 22233332220
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 173 -----------------------------------------------------------------------~--~~~~~v 179 (357)
T 3d8b_A 173 -----------------------------------------------------------------------R--CQQPAV 179 (357)
T ss_dssp -----------------------------------------------------------------------H--HTCSEE
T ss_pred -----------------------------------------------------------------------H--hcCCeE
Confidence 0 014789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+...+.. +.......++..||..++|.... ...+++||+++ +.|..+.|+|++||+..+.
T Consensus 180 l~iDEid~l~~~~~~--~~~~~~~~~~~~lL~~l~~~~~~------~~~~v~vI~at----n~~~~l~~~l~~Rf~~~i~ 247 (357)
T 3d8b_A 180 IFIDEIDSLLSQRGD--GEHESSRRIKTEFLVQLDGATTS------SEDRILVVGAT----NRPQEIDEAARRRLVKRLY 247 (357)
T ss_dssp EEEETHHHHTBC--------CHHHHHHHHHHHHHHC----------CCCCEEEEEEE----SCGGGBCHHHHTTCCEEEE
T ss_pred EEEeCchhhhccCCC--CcchHHHHHHHHHHHHHhccccc------CCCCEEEEEec----CChhhCCHHHHhhCceEEE
Confidence 999999999876543 12223445788899988874321 23578888885 5677899999999999999
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
+..++.++..+|+. .++...+ +.+++++++.|++.+. ++-.+.|+.++....
T Consensus 248 i~~p~~~~r~~il~-----------~~~~~~~--~~l~~~~l~~la~~t~-------G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 248 IPLPEASARKQIVI-----------NLMSKEQ--CCLSEEEIEQIVQQSD-------AFSGADMTQLCREAS 299 (357)
T ss_dssp CCCCCHHHHHHHHH-----------HHHHTSC--BCCCHHHHHHHHHHTT-------TCCHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHH-----------HHHhhcC--CCccHHHHHHHHHHcC-------CCCHHHHHHHHHHHH
Confidence 99999999999883 2233333 4578999999998773 344566777766654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=177.82 Aligned_cols=201 Identities=27% Similarity=0.431 Sum_probs=141.2
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+...+..+.....+..+.. .++.++||+||||||||++|+++|+.++.+|+.++++++... |+|.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~--~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~-~~~~ 97 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLR--APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK-YVGD 97 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG--CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS-SCSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCC--CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc-ccch
Confidence 6899999999999998876544333332222 125799999999999999999999999999999999998765 7665
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
. +..++.+|..+
T Consensus 98 ~-~~~~~~~~~~~------------------------------------------------------------------- 109 (297)
T 3b9p_A 98 G-EKLVRALFAVA------------------------------------------------------------------- 109 (297)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 4 23344433222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...+++|
T Consensus 110 -------------------------------------------------------------------------~~~~~~v 116 (297)
T 3b9p_A 110 -------------------------------------------------------------------------RHMQPSI 116 (297)
T ss_dssp -------------------------------------------------------------------------HHTCSEE
T ss_pred -------------------------------------------------------------------------HHcCCcE
Confidence 0115689
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeEEE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 1100 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~ 1100 (1165)
|||||||.+....... ..+. ...+|..||..+++.... ...+++++|+++ +.|+++.|.+++||..++.
T Consensus 117 l~iDEid~l~~~~~~~-~~~~-~~~~~~~ll~~l~~~~~~-----~~~~~v~vi~~t----n~~~~l~~~l~~R~~~~i~ 185 (297)
T 3b9p_A 117 IFIDEVDSLLSERSSS-EHEA-SRRLKTEFLVEFDGLPGN-----PDGDRIVVLAAT----NRPQELDEAALRRFTKRVY 185 (297)
T ss_dssp EEEETGGGTSBCC------CC-SHHHHHHHHHHHHHCC-----------CEEEEEEE----SCGGGBCHHHHHHCCEEEE
T ss_pred EEeccHHHhccccccC-cchH-HHHHHHHHHHHHhccccc-----CCCCcEEEEeec----CChhhCCHHHHhhCCeEEE
Confidence 9999999998775431 1222 234677788888763321 123568888885 4778899999999999999
Q ss_pred cCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1101 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1101 l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
++.++.++...|+. .++...+. .+++++++.|++.+
T Consensus 186 ~~~p~~~~r~~il~-----------~~~~~~~~--~~~~~~~~~la~~~ 221 (297)
T 3b9p_A 186 VSLPDEQTRELLLN-----------RLLQKQGS--PLDTEALRRLAKIT 221 (297)
T ss_dssp CCCCCHHHHHHHHH-----------HHHGGGSC--CSCHHHHHHHHHHT
T ss_pred eCCcCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc
Confidence 99999999988887 23333343 46677777777654
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=185.27 Aligned_cols=215 Identities=23% Similarity=0.368 Sum_probs=145.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.|...+.....+..+...... .+.++||+||||||||++|+++|..++.+|+.++++++... |+|.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~-~~g~ 191 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRA--PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK-YVGE 191 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC--CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCC--CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc-ccch
Confidence 47999999999999988766444444333322 24799999999999999999999999999999999998763 6665
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.+|..+
T Consensus 192 ~-~~~~~~~~~~a------------------------------------------------------------------- 203 (389)
T 3vfd_A 192 G-EKLVRALFAVA------------------------------------------------------------------- 203 (389)
T ss_dssp C-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 23333333331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 204 -----------------------------------------------------------------------~--~~~~~i 210 (389)
T 3vfd_A 204 -----------------------------------------------------------------------R--ELQPSI 210 (389)
T ss_dssp -----------------------------------------------------------------------H--HSSSEE
T ss_pred -----------------------------------------------------------------------H--hcCCeE
Confidence 0 014689
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+...... +.......+|..||..++|... ....+++||+++ +.|..+.|.|++||...+.
T Consensus 211 l~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~l~~~~~------~~~~~v~vI~at----n~~~~l~~~l~~R~~~~i~ 278 (389)
T 3vfd_A 211 IFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQS------AGDDRVLVMGAT----NRPQELDEAVLRRFIKRVY 278 (389)
T ss_dssp EEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----------CEEEEEEE----SCGGGCCHHHHTTCCEEEE
T ss_pred EEEECchhhcccCCC--ccchHHHHHHHHHHHHhhcccc------cCCCCEEEEEec----CCchhcCHHHHcCcceEEE
Confidence 999999999776443 1122234578889988886321 123568888885 4677899999999998899
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|..++.+++.+|+. .++...+ ..+++++++.|++.+.. +-.+.|..++...
T Consensus 279 i~~p~~~~r~~il~-----------~~~~~~~--~~l~~~~~~~la~~~~g-------~~~~~l~~L~~~a 329 (389)
T 3vfd_A 279 VSLPNEETRLLLLK-----------NLLCKQG--SPLTQKELAQLARMTDG-------YSGSDLTALAKDA 329 (389)
T ss_dssp CCCCCHHHHHHHHH-----------HHHTTSC--CCSCHHHHHHHHHHTTT-------CCHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHcCC-------CCHHHHHHHHHHH
Confidence 99999999999983 2233344 46789999999887743 3344555555443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=176.22 Aligned_cols=216 Identities=26% Similarity=0.396 Sum_probs=149.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+..+..+..+..+... ++.++||+||||||||++|+++|+.++.+|+.++++++... |+|.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~--~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~-~~~~ 97 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRA--PAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK-YVGD 97 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGC--CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS-SCSC
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCC--CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc-ccch
Confidence 47999999999999988766544444433222 25799999999999999999999999999999999987653 6654
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.++..+
T Consensus 98 ~-~~~~~~~~~~~------------------------------------------------------------------- 109 (297)
T 3b9p_A 98 G-EKLVRALFAVA------------------------------------------------------------------- 109 (297)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 22233333220
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 110 -----------------------------------------------------------------------~--~~~~~v 116 (297)
T 3b9p_A 110 -----------------------------------------------------------------------R--HMQPSI 116 (297)
T ss_dssp -----------------------------------------------------------------------H--HTCSEE
T ss_pred -----------------------------------------------------------------------H--HcCCcE
Confidence 0 015789
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCeeEe
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVE 502 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~~v~ 502 (1165)
|||||||.+....... ..+. ...++..||..+++.... ....++++|+++ +.|..+.|++++||+..+.
T Consensus 117 l~iDEid~l~~~~~~~-~~~~-~~~~~~~ll~~l~~~~~~-----~~~~~v~vi~~t----n~~~~l~~~l~~R~~~~i~ 185 (297)
T 3b9p_A 117 IFIDEVDSLLSERSSS-EHEA-SRRLKTEFLVEFDGLPGN-----PDGDRIVVLAAT----NRPQELDEAALRRFTKRVY 185 (297)
T ss_dssp EEEETGGGTSBCC------CC-SHHHHHHHHHHHHHCC-----------CEEEEEEE----SCGGGBCHHHHHHCCEEEE
T ss_pred EEeccHHHhccccccC-cchH-HHHHHHHHHHHHhccccc-----CCCCcEEEEeec----CChhhCCHHHHhhCCeEEE
Confidence 9999999998775431 1122 234667788888763221 123567888874 5677899999999999999
Q ss_pred cCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 503 LDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 503 ~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
+..++.++...|+. .++...+ ..+++++++.|++.+. ++-.+.|..+++..
T Consensus 186 ~~~p~~~~r~~il~-----------~~~~~~~--~~~~~~~~~~la~~~~-------g~~~~~l~~l~~~a 236 (297)
T 3b9p_A 186 VSLPDEQTRELLLN-----------RLLQKQG--SPLDTEALRRLAKITD-------GYSGSDLTALAKDA 236 (297)
T ss_dssp CCCCCHHHHHHHHH-----------HHHGGGS--CCSCHHHHHHHHHHTT-------TCCHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHcC-------CCCHHHHHHHHHHH
Confidence 99999999988883 2233333 3578999999988763 33345666666554
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=182.80 Aligned_cols=218 Identities=18% Similarity=0.295 Sum_probs=147.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+++..+.+++.+...... ..+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~-~~g~ 92 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFGE 92 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH-HHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh-hcCc
Confidence 47999999999999998765444432221110 124799999999999999999999999999999998877543 5555
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.+|..+
T Consensus 93 ~-~~~~~~~f~~a------------------------------------------------------------------- 104 (301)
T 3cf0_A 93 S-EANVREIFDKA------------------------------------------------------------------- 104 (301)
T ss_dssp C-TTHHHHHHHHH-------------------------------------------------------------------
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 4 22233333331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 105 -----------------------------------------------------------------------~~--~~p~i 111 (301)
T 3cf0_A 105 -----------------------------------------------------------------------RQ--AAPCV 111 (301)
T ss_dssp -----------------------------------------------------------------------HH--TCSEE
T ss_pred -----------------------------------------------------------------------Hh--cCCeE
Confidence 00 14789
Q ss_pred EEEecchhhhccCCCCCC-CccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCe
Q psy2392 423 IFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~-~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~ 499 (1165)
|||||||.+...++...+ .......++..||..++|.. ...++++|+++ +.|..+.|++++ ||+.
T Consensus 112 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~v~vi~at----n~~~~ld~al~r~gRf~~ 179 (301)
T 3cf0_A 112 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPGRLDQ 179 (301)
T ss_dssp EEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC--------TTSSEEEEEEE----SCGGGSCGGGGSTTSSCE
T ss_pred EEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc--------CCCCEEEEEec----CCccccChHHhcCCccce
Confidence 999999999987543211 11122347778999998632 24578888884 567789999886 9999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
.+.|..++.++..+|++ ..+...++.-.+ .++.|+..++ ++-.+-|++++++.+..
T Consensus 180 ~i~i~~p~~~~r~~il~-----------~~l~~~~~~~~~---~~~~la~~~~-------g~sg~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 180 LIYIPLPDEKSRVAILK-----------ANLRKSPVAKDV---DLEFLAKMTN-------GFSGADLTEICQRACKL 235 (301)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHTTSCBCSSC---CHHHHHHTCS-------SCCHHHHHHHHHHHHHH
T ss_pred EEecCCcCHHHHHHHHH-----------HHHccCCCCccc---hHHHHHHHcC-------CCCHHHHHHHHHHHHHH
Confidence 99999999999999884 223333332122 2455665443 23334788888776543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.5e-17 Score=197.27 Aligned_cols=245 Identities=18% Similarity=0.237 Sum_probs=152.0
Q ss_pred HHhhhccCCChHHHHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhH
Q psy2392 752 KALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 831 (1165)
Q Consensus 752 ~~l~~~t~~~~~~i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~ 831 (1165)
..+...+.+++.....+...+.+..+.|+++++|++++++.+...+... .....- +..+++|+||||||||+
T Consensus 52 ~~l~~~~~lp~~~~~~~~~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~--~~~~~~------~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 52 NYIDWLVALPWTDETDDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQ--KLTKSL------KGPILCLAGPPGVGKTS 123 (543)
T ss_dssp HHHHHHHHSCSSCCCCCCCCTTTGGGTHHHHCSSCHHHHHHHHHHHHHH--HHSSSC------CSCEEEEESSSSSSHHH
T ss_pred HHHHHHhcCCCCccccccccHHHHHHHHHHHhccHHHHHHHHHHHHHHH--HhcccC------CCCEEEEECCCCCCHHH
Confidence 3333334444444333445556667778899999999999998776643 221111 24789999999999999
Q ss_pred HHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCc
Q psy2392 832 IARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLD 911 (1165)
Q Consensus 832 lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~ 911 (1165)
+|+++|+.++.+|..++++.+... .++++.... .+..
T Consensus 124 lar~ia~~l~~~~~~i~~~~~~~~-----------~~~~g~~~~---------------------~ig~----------- 160 (543)
T 3m6a_A 124 LAKSIAKSLGRKFVRISLGGVRDE-----------SEIRGHRRT---------------------YVGA----------- 160 (543)
T ss_dssp HHHHHHHHHTCEEEEECCCC------------------------------------------------------------
T ss_pred HHHHHHHhcCCCeEEEEecccchh-----------hhhhhHHHH---------------------Hhcc-----------
Confidence 999999999999999988764321 111100000 0000
Q ss_pred cccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHH
Q psy2392 912 TDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIK 991 (1165)
Q Consensus 912 ~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~ 991 (1165)
+...+
T Consensus 161 ---------------------------------------------------~~~~~------------------------ 165 (543)
T 3m6a_A 161 ---------------------------------------------------MPGRI------------------------ 165 (543)
T ss_dssp ------------------------------------------------------CH------------------------
T ss_pred ---------------------------------------------------CchHH------------------------
Confidence 00000
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHhh-hcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce---eeee--e
Q psy2392 992 LLIDEEANKLLNEDEIQQKAINNV-EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN---TKYG--I 1065 (1165)
Q Consensus 992 ~l~~~~~~~~~~~~~~~~~a~~~~-~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~---~k~~--~ 1065 (1165)
..+...+ ..++|+||||||++.....+ .+|..||.++|+.... ..+. .
T Consensus 166 -----------------~~~~~~a~~~~~vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~ 219 (543)
T 3m6a_A 166 -----------------IQGMKKAGKLNPVFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEET 219 (543)
T ss_dssp -----------------HHHHHTTCSSSEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCC
T ss_pred -----------------HHHHHHhhccCCEEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCee
Confidence 0011111 14569999999999876322 2788999999875432 2222 3
Q ss_pred ccCceEEEEecCCCCCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHH
Q psy2392 1066 IKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRL 1145 (1165)
Q Consensus 1066 ~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~i 1145 (1165)
++..+++||++.+ .++.+.|+|++||.+ ++|++++.++..+|++ ..++.++.+........+.|+++++..|
T Consensus 220 ~~~~~v~iI~ttN----~~~~l~~aL~~R~~v-i~~~~~~~~e~~~Il~---~~l~~~~~~~~~~~~~~i~i~~~~l~~l 291 (543)
T 3m6a_A 220 FDLSKVLFIATAN----NLATIPGPLRDRMEI-INIAGYTEIEKLEIVK---DHLLPKQIKEHGLKKSNLQLRDQAILDI 291 (543)
T ss_dssp CBCSSCEEEEECS----STTTSCHHHHHHEEE-EECCCCCHHHHHHHHH---HTHHHHHHHHTTCCGGGCEECHHHHHHH
T ss_pred ecccceEEEeccC----ccccCCHHHHhhcce-eeeCCCCHHHHHHHHH---HHHHHHHHHHcCCCcccccCCHHHHHHH
Confidence 4557899998864 577899999999975 7999999999999998 4454444333322223779999999999
Q ss_pred HHHHhccCcCCc
Q psy2392 1146 AEIAYCINERTE 1157 (1165)
Q Consensus 1146 a~~a~~~~~~~~ 1157 (1165)
+. .|....+.+
T Consensus 292 ~~-~~~~~~~vR 302 (543)
T 3m6a_A 292 IR-YYTREAGVR 302 (543)
T ss_dssp HH-HHCCCSSSH
T ss_pred HH-hCChhhchh
Confidence 87 555443333
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=179.15 Aligned_cols=180 Identities=19% Similarity=0.301 Sum_probs=130.6
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.+.+.+..+++...+..... ..++.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|
T Consensus 14 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~-~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~-~~g 91 (301)
T 3cf0_A 14 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFG 91 (301)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC-CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHH-HHT
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC-CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhh-hcC
Confidence 47899999999999999876433221111000 0125789999999999999999999999999999999887665 666
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
... ..++.+|..+.
T Consensus 92 ~~~-~~~~~~f~~a~----------------------------------------------------------------- 105 (301)
T 3cf0_A 92 ESE-ANVREIFDKAR----------------------------------------------------------------- 105 (301)
T ss_dssp TCT-THHHHHHHHHH-----------------------------------------------------------------
T ss_pred chH-HHHHHHHHHHH-----------------------------------------------------------------
Confidence 653 33454443330
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
...++
T Consensus 106 ---------------------------------------------------------------------------~~~p~ 110 (301)
T 3cf0_A 106 ---------------------------------------------------------------------------QAAPC 110 (301)
T ss_dssp ---------------------------------------------------------------------------HTCSE
T ss_pred ---------------------------------------------------------------------------hcCCe
Confidence 01468
Q ss_pred eeeehhhhhhhccCCCCCC-CCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCC
Q psy2392 1020 IIFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~-~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~ 1096 (1165)
|+||||||.++...++..+ .......++..||..++|.. ...++++|++. +.|+.+.|.+++ ||.
T Consensus 111 il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~v~vi~at----n~~~~ld~al~r~gRf~ 178 (301)
T 3cf0_A 111 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS--------TKKNVFIIGAT----NRPDIIDPAILRPGRLD 178 (301)
T ss_dssp EEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC--------TTSSEEEEEEE----SCGGGSCGGGGSTTSSC
T ss_pred EEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc--------CCCCEEEEEec----CCccccChHHhcCCccc
Confidence 9999999999977433211 11122347888999998632 23578888886 477788899886 999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..+.|+.++.++..+|++
T Consensus 179 ~~i~i~~p~~~~r~~il~ 196 (301)
T 3cf0_A 179 QLIYIPLPDEKSRVAILK 196 (301)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred eEEecCCcCHHHHHHHHH
Confidence 999999999999999987
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.5e-16 Score=183.50 Aligned_cols=140 Identities=24% Similarity=0.370 Sum_probs=96.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCC-CCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p-~~l~pel~~R~ 497 (1165)
.++||||||||.+.+. .|..||+.+|.+. +.||+++. .+| ..+.+.|++|+
T Consensus 106 ~~~iLfIDEI~~l~~~-------------~q~~LL~~le~~~------------v~lI~att---~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKS-------------QQDAFLPHIEDGT------------ITFIGATT---ENPSFELNSALLSRA 157 (447)
T ss_dssp CCEEEEEETTTCC-------------------CCHHHHHTTS------------CEEEEEES---SCGGGSSCHHHHTTE
T ss_pred CCcEEEEeChhhhCHH-------------HHHHHHHHHhcCc------------eEEEecCC---CCcccccCHHHhCce
Confidence 4789999999999866 4458999998632 45666642 344 36899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
.+ +.|++|+.+++.+++. ..+.+....+ .+..+.+++++++.|++.+ ++++|.+.+++++++.-.
T Consensus 158 ~v-~~l~~l~~edi~~il~----~~l~~~~~~~--~~~~~~i~~~al~~L~~~~--------~Gd~R~lln~Le~a~~~a 222 (447)
T 3pvs_A 158 RV-YLLKSLSTEDIEQVLT----QAMEDKTRGY--GGQDIVLPDETRRAIAELV--------NGDARRALNTLEMMADMA 222 (447)
T ss_dssp EE-EECCCCCHHHHHHHHH----HHHHCTTTSS--TTSSEECCHHHHHHHHHHH--------CSCHHHHHHHHHHHHHHS
T ss_pred eE-EeeCCcCHHHHHHHHH----HHHHHHhhhh--ccccCcCCHHHHHHHHHHC--------CCCHHHHHHHHHHHHHhc
Confidence 85 5799999999999984 1111110000 1155789999999999986 678999999999987543
Q ss_pred hcccCCCeeEEcccccccccccCcc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGDLSI 602 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~~~~ 602 (1165)
... ......||.+.|++.++....
T Consensus 223 ~~~-~~~~~~It~e~v~~~l~~~~~ 246 (447)
T 3pvs_A 223 EVD-DSGKRVLKPELLTEIAGERSA 246 (447)
T ss_dssp CBC-TTSCEECCHHHHHHHHTCCCC
T ss_pred ccc-cCCCCccCHHHHHHHHhhhhh
Confidence 111 112257999999888776543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-16 Score=171.91 Aligned_cols=241 Identities=19% Similarity=0.305 Sum_probs=154.4
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+...+........+....+. ..+.++||+||||||||++|+++|+.++.+++.++++++... |.|.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~~~ 94 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGI-EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGE 94 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCC-CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC-STTH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh-ccch
Confidence 47899999999999988654333322211110 124789999999999999999999999999999999887653 5554
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...+..++..+
T Consensus 95 ~-~~~~~~~~~~~------------------------------------------------------------------- 106 (285)
T 3h4m_A 95 G-ASLVKDIFKLA------------------------------------------------------------------- 106 (285)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 22222222220
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
. ...++|
T Consensus 107 -----------------------------------------------------------------------~--~~~~~v 113 (285)
T 3h4m_A 107 -----------------------------------------------------------------------K--EKAPSI 113 (285)
T ss_dssp -----------------------------------------------------------------------H--HTCSEE
T ss_pred -----------------------------------------------------------------------H--HcCCeE
Confidence 0 014689
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~ 500 (1165)
|||||||.+..+..+... ......|+.|+.+++... +.....++++|+++ +.|..+.|.+++ ||+..
T Consensus 114 l~iDEid~l~~~~~~~~~--~~~~~~~~~l~~ll~~~~-----~~~~~~~~~vI~tt----n~~~~l~~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 114 IFIDEIDAIAAKRTDALT--GGDREVQRTLMQLLAEMD-----GFDARGDVKIIGAT----NRPDILDPAILRPGRFDRI 182 (285)
T ss_dssp EEEETTHHHHBCCSSSCC--GGGGHHHHHHHHHHHHHH-----TTCSSSSEEEEEEC----SCGGGBCHHHHSTTSEEEE
T ss_pred EEEECHHHhcccCccccC--CccHHHHHHHHHHHHHhh-----CCCCCCCEEEEEeC----CCchhcCHHHcCCCcCCeE
Confidence 999999999987654211 122235555655543210 01123468888885 467789999987 99999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcc
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN 580 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~ 580 (1165)
+.|++++.++..+|+. ..+...++ . .+..++.|+..+. ++-.|.++.++..+.......
T Consensus 183 i~~~~p~~~~r~~il~-----------~~~~~~~~--~-~~~~~~~l~~~~~-------g~~~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 183 IEVPAPDEKGRLEILK-----------IHTRKMNL--A-EDVNLEEIAKMTE-------GCVGAELKAICTEAGMNAIRE 241 (285)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHTTSCB--C-TTCCHHHHHHHCT-------TCCHHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCHHHHHHHHH-----------HHHhcCCC--C-CcCCHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999984 11222222 1 2233566666553 345677888777765544322
Q ss_pred cCCCeeEEcccccccccccCc
Q psy2392 581 SNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 581 ~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
.. -.|+.+.+++.+.+..
T Consensus 242 ~~---~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 242 LR---DYVTMDDFRKAVEKIM 259 (285)
T ss_dssp TC---SSBCHHHHHHHHHHHH
T ss_pred cc---CcCCHHHHHHHHHHHH
Confidence 11 2477777776665443
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-16 Score=185.68 Aligned_cols=305 Identities=17% Similarity=0.234 Sum_probs=164.7
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCccccc
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVG 856 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~G 856 (1165)
.+++|+||+++++.+...+... +.+.. ++.++||+||||||||++|+++|+.++ .+|+.++++++.++
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~--~~~~~-------~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~- 104 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELI--KSKKM-------AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST- 104 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHH--HTTCC-------TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS-
T ss_pred chhhccCHHHHHHHHHHHHHHH--HhCCC-------CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH-
Confidence 3578999999999988776532 22211 257999999999999999999999998 99999999999877
Q ss_pred ccccChhhHHHHHHHHHH---hhhhh-------hHHHHhhhHH----HHHHHH-------------------HHHHhhcC
Q psy2392 857 YVGRDVDTIIRDLIDISI---KQTRE-------FEINKVRTRA----EDAAED-------------------RVIDILVP 903 (1165)
Q Consensus 857 yvG~~~~~~l~~lf~~a~---~~~~~-------~~~~~~~~~~----~~~a~~-------------------~vv~~ll~ 903 (1165)
|+|... . ++++|..|. ...++ +.+...+... ...... .+++.+..
T Consensus 105 ~~~~~~-~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 105 EIKKTE-V-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSCHHH-H-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred hhhhhH-H-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 888763 3 888888772 22111 0000001000 000011 12222210
Q ss_pred CcccCCCccccCCcccchhhHHHH--HHhhccCCCCCe-EEEEEecCC--CCcccccCCcchHHH---------HHHHHH
Q psy2392 904 SKEKSNLDTDFNNENNNISTRQIF--RKRLREGALDNK-EIEIELNDT--GPHMEIMSPPGMEEM---------TAQIKT 969 (1165)
Q Consensus 904 ~~~~~~~~~~~~~~~~~~~~r~~~--~~~l~~g~ld~r-~v~i~~~~~--~~~~~~~~~~~~~~~---------~~~~~~ 969 (1165)
..... .+..+ -.+.+++... ++..|+||+|-. .++|.+|+. ..+.+++..-...++ +..+.+
T Consensus 183 ~~~~~-~~~v~---i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~ 258 (456)
T 2c9o_A 183 ERVEA-GDVIY---IEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILS 258 (456)
T ss_dssp TTCCT-TEEEE---EETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC-----------
T ss_pred ccCCC-CCEEE---EEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 00000 00000 0001111111 345789999731 345555543 224444431111111 112222
Q ss_pred HHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhc---CCeeeehhhhhhhccCCCCCCCCccchhh
Q psy2392 970 MFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQ---NGIIFLDEIDKITTRSSQNNNTDISRAGV 1046 (1165)
Q Consensus 970 ~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~---~gIvfiDEiDki~~~~~~~~~~~~~~~gv 1046 (1165)
++..+.. .+...++..- +..+. .+...-.+.+.. ++|+||||+|++... .
T Consensus 259 l~~~i~~--p~~~~I~~~l-r~~I~-----------~~l~~~~~~g~~~v~~~VliIDEa~~l~~~-------------a 311 (456)
T 2c9o_A 259 MMGQLMK--PKKTEITDKL-RGEIN-----------KVVNKYIDQGIAELVPGVLFVDEVHMLDIE-------------C 311 (456)
T ss_dssp ---------------------CHHH-----------HHHHHHHHTTSEEEEECEEEEESGGGCBHH-------------H
T ss_pred HHhhhcc--cchhhHHHHH-HHHHH-----------HHHHHHHHhccccccceEEEEechhhcCHH-------------H
Confidence 2221110 0001111100 00000 011111111211 379999999999765 8
Q ss_pred hhhccccccCccceeeeeeccCceEEEEecC--------CC-CCCCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhH
Q psy2392 1047 QRDLLPLVEGTTVNTKYGIIKTDHILFIASG--------AF-HLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTN 1117 (1165)
Q Consensus 1047 q~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~g--------af-~~~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~ 1117 (1165)
|+.||+.+|... .++ ||.++ +. ....|..+.|.+++||.+. .|.+++.+++.+||+
T Consensus 312 ~~aLlk~lEe~~----------~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~-~~~~~~~~e~~~iL~--- 376 (456)
T 2c9o_A 312 FTYLHRALESSI----------API-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMII-RTMLYTPQEMKQIIK--- 376 (456)
T ss_dssp HHHHHHHTTSTT----------CCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEE-ECCCCCHHHHHHHHH---
T ss_pred HHHHHHHhhccC----------CCE-EEEecCCccccccccccccccccCChhHHhhccee-eCCCCCHHHHHHHHH---
Confidence 999999999642 222 33222 11 1334889999999999985 999999999999998
Q ss_pred HHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1118 VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1118 ~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
..+..+|+ .++++++..|+..|.+
T Consensus 377 --------~~~~~~~~--~~~~~~~~~i~~~a~~ 400 (456)
T 2c9o_A 377 --------IRAQTEGI--NISEEALNHLGEIGTK 400 (456)
T ss_dssp --------HHHHHHTC--CBCHHHHHHHHHHHHH
T ss_pred --------HHHHHhCC--CCCHHHHHHHHHHccC
Confidence 12233455 6899999999998843
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=170.42 Aligned_cols=138 Identities=16% Similarity=0.261 Sum_probs=96.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee--------eceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~--------~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
.+++|||||||.+... +|..|+..++...+.. +...++..++.||++++ .+..+.
T Consensus 106 ~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn----~~~~l~ 168 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT----RAGMLS 168 (338)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES----CGGGSC
T ss_pred CCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC----CccccC
Confidence 5789999999999754 6778999998765432 11122333678888853 455689
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
|.|++||+..+.|.+|+.+++..++. ..+...+ +.+++++++.|++.+ .+..|.+.+++
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~-----------~~~~~~~--~~~~~~~~~~l~~~~--------~G~~r~l~~~l 227 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQ-----------KAALKLN--KTCEEKAALEIAKRS--------RSTPRIALRLL 227 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHH-----------HHHHHTT--CEECHHHHHHHHHTT--------TTCHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHH--------CcCHHHHHHHH
Confidence 99999999999999999999999884 1122234 478999999998833 46689999999
Q ss_pred HHHHHHhhcccCCCeeEEccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
+++..-...... -.|+.+.++..+
T Consensus 228 ~~~~~~a~~~~~---~~i~~~~~~~~~ 251 (338)
T 3pfi_A 228 KRVRDFADVNDE---EIITEKRANEAL 251 (338)
T ss_dssp HHHHHHHHHTTC---SEECHHHHHHHH
T ss_pred HHHHHHHHhhcC---CccCHHHHHHHH
Confidence 987644322211 246666665544
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-15 Score=181.60 Aligned_cols=217 Identities=24% Similarity=0.362 Sum_probs=143.1
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+.. ++.+........ ..|.++||+||||||||++|+++|..++.+|+.++++++.+. |+|.
T Consensus 16 ~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~-~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~-~~g~ 92 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIGA-RMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGV 92 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTC-CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC-CTTH
T ss_pred HHhCCcHHHHHHHHHHHHH-hhChHHHhhcCC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH-Hhcc
Confidence 4799999999999887653 222211111111 124789999999999999999999999999999999998764 6665
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|..+
T Consensus 93 ~-~~~~r~lf~~A------------------------------------------------------------------- 104 (476)
T 2ce7_A 93 G-AARVRDLFAQA------------------------------------------------------------------- 104 (476)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred c-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 4 22233343331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 105 -----------------------------------------------------------------------~~--~~p~I 111 (476)
T 2ce7_A 105 -----------------------------------------------------------------------KA--HAPCI 111 (476)
T ss_dssp -----------------------------------------------------------------------HH--TCSEE
T ss_pred -----------------------------------------------------------------------Hh--cCCCE
Confidence 11 14789
Q ss_pred EEEecchhhhccCCCC-CCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 423 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~-~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|||||||.+...++.+ ++.+..++.+++.||..++|-. ...++++|++. +.|..+.|+++ |||+.
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------~~~~viVIaaT----n~~~~Ld~allR~gRFd~ 179 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------SKEGIIVMAAT----NRPDILDPALLRPGRFDK 179 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--------GGGTEEEEEEE----SCGGGSCGGGGSTTSSCE
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--------CCCCEEEEEec----CChhhhchhhcccCccee
Confidence 9999999998876532 2344455667888998887521 23467788884 56777889987 59999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
.|.|.+++.++..+|++ . .+. +..+. ++..++.|+... +++-+|-|.+++.+....
T Consensus 180 ~i~i~~Pd~~~R~~Il~----~-------~~~--~~~l~-~~v~l~~la~~t-------~G~sgadL~~lv~~Aal~ 235 (476)
T 2ce7_A 180 KIVVDPPDMLGRKKILE----I-------HTR--NKPLA-EDVNLEIIAKRT-------PGFVGADLENLVNEAALL 235 (476)
T ss_dssp EEECCCCCHHHHHHHHH----H-------HHT--TSCBC-TTCCHHHHHHTC-------TTCCHHHHHHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHH----H-------HHH--hCCCc-chhhHHHHHHhc-------CCCcHHHHHHHHHHHHHH
Confidence 99999999999999884 1 111 22221 122255555433 333457788888776543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-15 Score=162.15 Aligned_cols=236 Identities=23% Similarity=0.331 Sum_probs=151.7
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+...+.. +........... ..+.+++|+||||||||++|+++|+.++.+++.++++++.+. |.|.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-~~~~ 88 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGG-KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGV 88 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCCC
T ss_pred HHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-hhhh
Confidence 4799999999998887653 222211111111 124689999999999999999999999999999999987653 5555
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.+|+.+
T Consensus 89 ~-~~~~~~~~~~a------------------------------------------------------------------- 100 (257)
T 1lv7_A 89 G-ASRVRDMFEQA------------------------------------------------------------------- 100 (257)
T ss_dssp C-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 4 22233333221
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..+++
T Consensus 101 -----------------------------------------------------------------------~~--~~~~i 107 (257)
T 1lv7_A 101 -----------------------------------------------------------------------KK--AAPCI 107 (257)
T ss_dssp -----------------------------------------------------------------------HT--TCSEE
T ss_pred -----------------------------------------------------------------------HH--cCCee
Confidence 00 13679
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCe
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~ 499 (1165)
+||||||.+....+... +........++.+|..+++.. ...++++|++. +.|..+.|.+.+ ||+.
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~~t----n~~~~l~~~l~r~~rf~~ 175 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPGRFDR 175 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--------SSSCEEEEEEE----SCTTTSCGGGGSTTSSCE
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc--------cCCCEEEEEee----CCchhCCHHHcCCCcCCe
Confidence 99999999988755422 122223345667777777632 24567788774 567889999986 9999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH-HHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a-~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|..++.++..+|+. . .+.. . .+++++ +..++. . .+++.+|.|.++++++.....
T Consensus 176 ~i~i~~P~~~~r~~il~----~-------~~~~--~--~l~~~~~~~~la~---~----~~G~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 176 QVVVGLPDVRGREQILK----V-------HMRR--V--PLAPDIDAAIIAR---G----TPGFSGADLANLVNEAALFAA 233 (257)
T ss_dssp EEECCCCCHHHHHHHHH----H-------HHTT--S--CBCTTCCHHHHHH---T----CTTCCHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHH----H-------HHhc--C--CCCccccHHHHHH---H----cCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998884 1 1221 2 223332 344433 2 134568999999988765443
Q ss_pred cccCCCeeEEccccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.... -.|+.+.+++.+..
T Consensus 234 ~~~~---~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 234 RGNK---RVVSMVEFEKAKDK 251 (257)
T ss_dssp HTTC---SSBCHHHHHHHHHH
T ss_pred HhCC---CcccHHHHHHHHHH
Confidence 2211 24666666655543
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-15 Score=164.00 Aligned_cols=238 Identities=23% Similarity=0.281 Sum_probs=135.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+.. ++.......... ..+.++||+||||||||++|+++|+.++.+++.++++++.+. |.|.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~-~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~~ 82 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDY-LKSPERFLQLGA-KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV-IGGL 82 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCCC------C-CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSS-STTH
T ss_pred HHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhh-ccCh
Confidence 4799999999999887653 222221111111 135789999999999999999999999999999999987643 4333
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.++..
T Consensus 83 ~-~~~~~~~~~~-------------------------------------------------------------------- 93 (262)
T 2qz4_A 83 G-AARVRSLFKE-------------------------------------------------------------------- 93 (262)
T ss_dssp H-HHHHHHHHHH--------------------------------------------------------------------
T ss_pred h-HHHHHHHHHH--------------------------------------------------------------------
Confidence 2 1222222221
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
|.. ..++|
T Consensus 94 ----------------------------------------------------------------------a~~--~~~~v 101 (262)
T 2qz4_A 94 ----------------------------------------------------------------------ARA--RAPCI 101 (262)
T ss_dssp ----------------------------------------------------------------------HHH--TCSEE
T ss_pred ----------------------------------------------------------------------HHh--cCCeE
Confidence 111 14789
Q ss_pred EEEecchhhhccCCCCCC--CccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCC
Q psy2392 423 IFLDEIDKITTRSSQNNN--TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFP 498 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~--~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~ 498 (1165)
|||||||.+...+..... .+.........||..+++.. ...++++|+++ +.|..+.|++++ ||+
T Consensus 102 l~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~--------~~~~~~vi~~t----n~~~~ld~~l~~~~R~~ 169 (262)
T 2qz4_A 102 VYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG--------TTDHVIVLAST----NRADILDGALMRPGRLD 169 (262)
T ss_dssp EEEECC-------------------CHHHHHHHHHHHTCC--------TTCCEEEEEEE----SCGGGGGSGGGSTTSCC
T ss_pred EEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC--------CCCCEEEEecC----CChhhcCHHHhcCCcCC
Confidence 999999999876433110 01111122334555455421 24577888875 456778899987 999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHH-HHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDD-GIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~-a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..+.|.+++.++..+|+. .. +...+. ..+++ ..+.|+..+. .+-.|.|.+++..+....
T Consensus 170 ~~i~i~~p~~~~r~~il~----~~-------~~~~~~--~~~~~~~~~~l~~~~~-------g~~~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 170 RHVFIDLPTLQERREIFE----QH-------LKSLKL--TQSSTFYSQRLAELTP-------GFSGADIANICNEAALHA 229 (262)
T ss_dssp EEEECCSCCHHHHHHHHH----HH-------HHHTTC--CBTHHHHHHHHHHTCT-------TCCHHHHHHHHHHHHTC-
T ss_pred eEEEeCCcCHHHHHHHHH----HH-------HHhCCC--CcchhhHHHHHHHHCC-------CCCHHHHHHHHHHHHHHH
Confidence 999999999999999884 12 222333 33444 2455655442 333467777777654322
Q ss_pred hcccCCCeeEEccccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.. ...-.|+.+.+.+.+..
T Consensus 230 ~~---~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 230 AR---EGHTSVHTLNFEYAVER 248 (262)
T ss_dssp ----------CCBCCHHHHHHH
T ss_pred HH---cCCCCCCHHHHHHHHHH
Confidence 11 11134666666555443
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=180.13 Aligned_cols=135 Identities=18% Similarity=0.215 Sum_probs=95.5
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCC-------c-ccCCCCCCch
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGA-------F-HLAKPSDLIP 491 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~ga-------f-~~~~p~~l~p 491 (1165)
++|+||||+|+++.. .++.||+.+|.. ..++++++++. . ....|..+.|
T Consensus 296 ~~VliIDEa~~l~~~-------------a~~aLlk~lEe~----------~~~~~il~tn~~~~~i~~~~~~~~~~~l~~ 352 (456)
T 2c9o_A 296 PGVLFVDEVHMLDIE-------------CFTYLHRALESS----------IAPIVIFASNRGNCVIRGTEDITSPHGIPL 352 (456)
T ss_dssp ECEEEEESGGGCBHH-------------HHHHHHHHTTST----------TCCEEEEEECCSEEECBTTSSCEEETTCCH
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhhcc----------CCCEEEEecCCccccccccccccccccCCh
Confidence 379999999999765 777999999953 23333324311 1 1233788999
Q ss_pred hhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 492 ELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
.+++||.++ .|.+++.+++.+||.. .+..+++ .+++++++.|++.+.+ ++.|....+++
T Consensus 353 ~i~sR~~~~-~~~~~~~~e~~~iL~~-----------~~~~~~~--~~~~~~~~~i~~~a~~-------g~~r~a~~ll~ 411 (456)
T 2c9o_A 353 DLLDRVMII-RTMLYTPQEMKQIIKI-----------RAQTEGI--NISEEALNHLGEIGTK-------TTLRYSVQLLT 411 (456)
T ss_dssp HHHTTEEEE-ECCCCCHHHHHHHHHH-----------HHHHHTC--CBCHHHHHHHHHHHHH-------SCHHHHHHTHH
T ss_pred hHHhhccee-eCCCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHHccC-------CCHHHHHHHHH
Confidence 999999985 9999999999999941 1223344 6899999999998843 57899999888
Q ss_pred HHHHHhhcccCCCeeEEcccccccccccCc
Q psy2392 572 KLLEEVSFNSNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 572 ~~l~~~~~~~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
.+..-...+-. -.|+.+.|++.+.-++
T Consensus 412 ~a~~~A~~~~~---~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 412 PANLLAKINGK---DSIEKEHVEEISELFY 438 (456)
T ss_dssp HHHHHHHHTTC---SSBCHHHHHHHHHHSC
T ss_pred HHHHHHhhcCC---CccCHHHHHHHHHHhc
Confidence 87543322111 2488888888766544
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=171.18 Aligned_cols=155 Identities=17% Similarity=0.184 Sum_probs=102.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 895 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~ 895 (1165)
|.++||+||||||||++|+++|+.++.+|+.++++++.+. |+|... ..++++|..|...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~-~~g~~~-~~i~~~f~~a~~~------------------- 94 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG-NAGEPA-KLIRQRYREAAEI------------------- 94 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC----HHH-HHHHHHHHHHHHH-------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhc-cCchhH-HHHHHHHHHHHHH-------------------
Confidence 6899999999999999999999999999999999998876 887763 4466665544111
Q ss_pred HHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhC
Q psy2392 896 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 975 (1165)
Q Consensus 896 ~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 975 (1165)
T Consensus 95 -------------------------------------------------------------------------------- 94 (293)
T 3t15_A 95 -------------------------------------------------------------------------------- 94 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhcccccc
Q psy2392 976 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 1055 (1165)
Q Consensus 976 ~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~E 1055 (1165)
. ...+++|+||||||+++....+..........+|..||.+++
T Consensus 95 ------------------------------------~-~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld 137 (293)
T 3t15_A 95 ------------------------------------I-RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 137 (293)
T ss_dssp ------------------------------------H-TTSSCCCEEEECCC--------------CHHHHHHHHHHHHH
T ss_pred ------------------------------------H-hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhc
Confidence 0 011578999999999998644322222334468999999999
Q ss_pred Cccce---eeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1056 GTTVN---TKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1056 g~~v~---~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
+.... ..++.....+++||++++ .|+.+.|+|+ |||...+.+ ++.++..+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~v~vI~ttN----~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~ 195 (293)
T 3t15_A 138 NPTNVQLPGMYNKQENARVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCT 195 (293)
T ss_dssp CCC-----------CCCCCCEEEECS----SCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHH
T ss_pred cccccccccccccccCCCcEEEEecC----CcccCCHHHhCCCCCceeEeC--cCHHHHHHHHH
Confidence 65432 223345667899999974 7888999998 699988765 39999999987
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=171.29 Aligned_cols=155 Identities=17% Similarity=0.188 Sum_probs=100.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHH
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAED 297 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1165)
|.++||+||||||||++|+++|+.++.+|++++++++.+. |+|.. +..++.+|..+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~-~~g~~-~~~i~~~f~~a~~-------------------- 93 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAAE-------------------- 93 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC----HH-HHHHHHHHHHHHH--------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhc-cCchh-HHHHHHHHHHHHH--------------------
Confidence 5799999999999999999999999999999999998764 77765 3445555544200
Q ss_pred HHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcC
Q psy2392 298 RVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIG 377 (1165)
Q Consensus 298 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (1165)
T Consensus 94 -------------------------------------------------------------------------------- 93 (293)
T 3t15_A 94 -------------------------------------------------------------------------------- 93 (293)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhccccc
Q psy2392 378 NHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVE 457 (1165)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~E 457 (1165)
... ..+++||||||||++++...+..........++..||.+++
T Consensus 94 -----------------------------------~~~-~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld 137 (293)
T 3t15_A 94 -----------------------------------IIR-KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 137 (293)
T ss_dssp -----------------------------------HHT-TSSCCCEEEECCC--------------CHHHHHHHHHHHHH
T ss_pred -----------------------------------HHh-cCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhc
Confidence 000 12578999999999998654322223344568899999998
Q ss_pred Cceeee---eceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCeeEecCCCCHHHHHHHHh
Q psy2392 458 GTTVNT---KYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 458 g~~v~~---~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+..... .+......+++||+|+ +.|+.+.|+|+ +||+..+.+ ++.++..+|++
T Consensus 138 ~~~~~~~~~~~~~~~~~~v~vI~tt----N~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~ 195 (293)
T 3t15_A 138 NPTNVQLPGMYNKQENARVPIIVTG----NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCT 195 (293)
T ss_dssp CCC-----------CCCCCCEEEEC----SSCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHH
T ss_pred cccccccccccccccCCCcEEEEec----CCcccCCHHHhCCCCCceeEeC--cCHHHHHHHHH
Confidence 654221 1233456788999996 57888999998 699988764 49999999984
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-15 Score=167.92 Aligned_cols=142 Identities=17% Similarity=0.160 Sum_probs=97.1
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
++||||||||.+... .++.|+..+|...... ........+.+|++. ..+.|..+.|.|++||.+
T Consensus 190 ~~vl~IDEi~~l~~~-------------~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t--~~~~~~~l~~~l~sR~~~ 253 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-------------SFSFLNRALESDMAPV-LIMATNRGITRIRGT--SYQSPHGIPIDLLDRLLI 253 (368)
T ss_dssp BCEEEEESGGGSBHH-------------HHHHHHHHTTCTTCCE-EEEEESCSEEECBTS--SCEEETTCCHHHHTTEEE
T ss_pred CceEEEhhccccChH-------------HHHHHHHHhhCcCCCe-eeeecccceeeeecc--CCCCcccCCHHHHhhccE
Confidence 579999999999754 6678888888643211 000111122222222 223467799999999988
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhc
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~ 579 (1165)
+.|++|+.+++.+|+. ..+..+++ .+++++++.|++.+.. ++.|.+.++++++......
T Consensus 254 -i~~~~~~~~e~~~il~-----------~~~~~~~~--~~~~~~l~~l~~~~~~-------G~~r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILR-----------IRCEEEDV--EMSEDAYTVLTRIGLE-------TSLRYAIQLITAASLVCRK 312 (368)
T ss_dssp -EEECCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHHHH-------SCHHHHHHHHHHHHHHHHH
T ss_pred -EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHHHHH
Confidence 6999999999999994 12233444 6899999999998842 6789999999998765432
Q ss_pred ccCCCeeEEcccccccccccCc
Q psy2392 580 NSNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 580 ~~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
.- .-.||.+.|++.+...+
T Consensus 313 ~~---~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 313 RK---GTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp TT---CSSBCHHHHHHHHHHSB
T ss_pred hC---CCCCCHHHHHHHHHHhc
Confidence 21 13588888888776544
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=164.07 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=90.7
Q ss_pred cceEEEEecchhhh-ccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~-~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~ 497 (1165)
.++||||||+|.+. +. .|+.|+.++|.. ..++.||+++ +.+..+.|.|++||
T Consensus 105 ~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~----------~~~~~iI~~~----n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAY----------SSNCSIIITA----NNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHH-------------HHHHHHHHHHHH----------GGGCEEEEEE----SSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHH-------------HHHHHHHHHHhC----------CCCcEEEEEe----CCccccCHHHHhhC
Confidence 46899999999997 43 677899988852 2345566653 35567999999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCH-HHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVD-DGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~-~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
. ++.|++++.+++.+|+. .+.......+..+|+ .+++ ++++.|++.+ +++.|.+.+.++++..
T Consensus 158 ~-~i~~~~~~~~e~~~il~----~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~--------~gd~R~a~~~L~~~~~- 221 (324)
T 3u61_B 158 R-VITFGQPTDEDKIEMMK----QMIRRLTEICKHEGI--AIADMKVVAALVKKN--------FPDFRKTIGELDSYSS- 221 (324)
T ss_dssp E-EEECCCCCHHHHHHHHH----HHHHHHHHHHHHHTC--CBSCHHHHHHHHHHT--------CSCTTHHHHHHHHHGG-
T ss_pred c-EEEeCCCCHHHHHHHHH----HHHHHHHHHHHHcCC--CCCcHHHHHHHHHhC--------CCCHHHHHHHHHHHhc-
Confidence 7 48999999999988884 445555566667776 5777 9999999875 5789999999888751
Q ss_pred hhcccCCCeeEEccccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
.-.||.+.|++.+..
T Consensus 222 --------~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 222 --------KGVLDAGILSLVTND 236 (324)
T ss_dssp --------GTCBCC---------
T ss_pred --------cCCCCHHHHHHHhCC
Confidence 013777777665543
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=179.39 Aligned_cols=215 Identities=20% Similarity=0.337 Sum_probs=148.5
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+++.+.+.+....++..+....+. ..+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~-~~g~ 281 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 281 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS-CTTH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh-hcch
Confidence 47999999999999988765444433322111 135799999999999999999999999999999999988754 6655
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
.. +.++.+|..+
T Consensus 282 ~~-~~~~~~f~~A------------------------------------------------------------------- 293 (489)
T 3hu3_A 282 SE-SNLRKAFEEA------------------------------------------------------------------- 293 (489)
T ss_dssp HH-HHHHHHHHHH-------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHH-------------------------------------------------------------------
Confidence 42 2233333331
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 294 -----------------------------------------------------------------------~~--~~p~i 300 (489)
T 3hu3_A 294 -----------------------------------------------------------------------EK--NAPAI 300 (489)
T ss_dssp -----------------------------------------------------------------------HH--TCSEE
T ss_pred -----------------------------------------------------------------------Hh--cCCcE
Confidence 00 14689
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~ 500 (1165)
|||||||.+.+.++.. ..+ ....+|..||..+++.. ...++++|+++ +.|..+.|+|++ ||+..
T Consensus 301 LfLDEId~l~~~~~~~-~~~-~~~~~~~~LL~~ld~~~--------~~~~v~vIaaT----n~~~~Ld~al~r~gRf~~~ 366 (489)
T 3hu3_A 301 IFIDELDAIAPKREKT-HGE-VERRIVSQLLTLMDGLK--------QRAHVIVMAAT----NRPNSIDPALRRFGRFDRE 366 (489)
T ss_dssp EEEESHHHHCBCTTSC-CCH-HHHHHHHHHHHHHHHSC--------TTSCEEEEEEE----SCGGGBCGGGGSTTSSCEE
T ss_pred EEecchhhhccccccc-cch-HHHHHHHHHHHHhhccc--------cCCceEEEEec----CCccccCHHHhCCCcCceE
Confidence 9999999999876541 122 22358889999998532 34568888884 567778999986 99999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
+.|..++.++..+||. .++ .++.+. .+..++.++..+. ++-+|-|..++.....
T Consensus 367 i~i~~P~~~eR~~IL~-----------~~~--~~~~l~-~~~~l~~la~~t~-------g~s~~dL~~L~~~A~~ 420 (489)
T 3hu3_A 367 VDIGIPDATGRLEILQ-----------IHT--KNMKLA-DDVDLEQVANETH-------GHVGADLAALCSEAAL 420 (489)
T ss_dssp EECCCCCHHHHHHHHH-----------HHT--TTSCBC-TTCCHHHHHHTCT-------TCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHH-----------HHH--hcCCCc-chhhHHHHHHHcc-------CCcHHHHHHHHHHHHH
Confidence 9999999999999994 111 222222 2223556665442 3445667777766543
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-15 Score=167.93 Aligned_cols=101 Identities=18% Similarity=0.301 Sum_probs=77.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee--------eeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~--------k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
..+++||||||.+... +|..|+..+|...+.. +...++..++.||+++. .+..+.
T Consensus 106 ~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn----~~~~l~ 168 (338)
T 3pfi_A 106 EGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT----RAGMLS 168 (338)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES----CGGGSC
T ss_pred CCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC----CccccC
Confidence 5789999999999754 8899999998765432 11123333678888865 455688
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHH
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAE 1147 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~ 1147 (1165)
|.|.+||...+.|.+++.+++..++. ..+...++ .+++++++.|+.
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~-----------~~~~~~~~--~~~~~~~~~l~~ 214 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQ-----------KAALKLNK--TCEEKAALEIAK 214 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHH-----------HHHHHTTC--EECHHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHH
Confidence 99999999999999999999999888 22333454 789999999988
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-15 Score=178.25 Aligned_cols=177 Identities=23% Similarity=0.405 Sum_probs=130.8
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+.+.+....+...+..... ...+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|+
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g-~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~-~~g~ 281 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIG-VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 281 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHT-CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS-CTTH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh-hcch
Confidence 6899999999999998875432222111110 1125789999999999999999999999999999999998766 7665
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++.+|..|.
T Consensus 282 ~~-~~~~~~f~~A~------------------------------------------------------------------ 294 (489)
T 3hu3_A 282 SE-SNLRKAFEEAE------------------------------------------------------------------ 294 (489)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 53 23444443320
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...++|
T Consensus 295 --------------------------------------------------------------------------~~~p~i 300 (489)
T 3hu3_A 295 --------------------------------------------------------------------------KNAPAI 300 (489)
T ss_dssp --------------------------------------------------------------------------HTCSEE
T ss_pred --------------------------------------------------------------------------hcCCcE
Confidence 014579
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~ 1098 (1165)
+||||||.++...+.. ..+. ...+|..||.++++.. ...++.+|++.. .|..+.|.|++ ||...
T Consensus 301 LfLDEId~l~~~~~~~-~~~~-~~~~~~~LL~~ld~~~--------~~~~v~vIaaTn----~~~~Ld~al~r~gRf~~~ 366 (489)
T 3hu3_A 301 IFIDELDAIAPKREKT-HGEV-ERRIVSQLLTLMDGLK--------QRAHVIVMAATN----RPNSIDPALRRFGRFDRE 366 (489)
T ss_dssp EEEESHHHHCBCTTSC-CCHH-HHHHHHHHHHHHHHSC--------TTSCEEEEEEES----CGGGBCGGGGSTTSSCEE
T ss_pred EEecchhhhccccccc-cchH-HHHHHHHHHHHhhccc--------cCCceEEEEecC----CccccCHHHhCCCcCceE
Confidence 9999999999875431 1222 2348899999999532 345678888864 67778899987 99999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
+.|..++.++..+||+
T Consensus 367 i~i~~P~~~eR~~IL~ 382 (489)
T 3hu3_A 367 VDIGIPDATGRLEILQ 382 (489)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHH
Confidence 9999999999999998
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-15 Score=162.73 Aligned_cols=180 Identities=23% Similarity=0.410 Sum_probs=125.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+...+........+..... ...+.++||+||||||||++|+++|+.++.+|+.++++++... |.|.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~~~ 94 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVG-IEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGE 94 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC-CCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC-STTH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC-CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh-ccch
Confidence 6899999999999988865432211111000 0125789999999999999999999999999999999988766 6654
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..+..+|..+
T Consensus 95 ~~-~~~~~~~~~~------------------------------------------------------------------- 106 (285)
T 3h4m_A 95 GA-SLVKDIFKLA------------------------------------------------------------------- 106 (285)
T ss_dssp HH-HHHHHHHHHH-------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHH-------------------------------------------------------------------
Confidence 42 2233333222
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
. ...++|
T Consensus 107 -----------------------------------------------------------------------~--~~~~~v 113 (285)
T 3h4m_A 107 -----------------------------------------------------------------------K--EKAPSI 113 (285)
T ss_dssp -----------------------------------------------------------------------H--HTCSEE
T ss_pred -----------------------------------------------------------------------H--HcCCeE
Confidence 0 014579
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCeE
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 1098 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i~ 1098 (1165)
+||||||.+........ .......|+.|+.+++.-. +.....++.+|+++. .|..+.|.+++ ||...
T Consensus 114 l~iDEid~l~~~~~~~~--~~~~~~~~~~l~~ll~~~~-----~~~~~~~~~vI~ttn----~~~~l~~~l~~~~Rf~~~ 182 (285)
T 3h4m_A 114 IFIDEIDAIAAKRTDAL--TGGDREVQRTLMQLLAEMD-----GFDARGDVKIIGATN----RPDILDPAILRPGRFDRI 182 (285)
T ss_dssp EEEETTHHHHBCCSSSC--CGGGGHHHHHHHHHHHHHH-----TTCSSSSEEEEEECS----CGGGBCHHHHSTTSEEEE
T ss_pred EEEECHHHhcccCcccc--CCccHHHHHHHHHHHHHhh-----CCCCCCCEEEEEeCC----CchhcCHHHcCCCcCCeE
Confidence 99999999987654311 1122346677766654210 111234688888864 67788899988 99999
Q ss_pred EEcCCCCHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~ 1114 (1165)
+.|++++.++..+|++
T Consensus 183 i~~~~p~~~~r~~il~ 198 (285)
T 3h4m_A 183 IEVPAPDEKGRLEILK 198 (285)
T ss_dssp EECCCCCHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHH
Confidence 9999999999999997
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=6.4e-16 Score=170.22 Aligned_cols=236 Identities=24% Similarity=0.383 Sum_probs=144.3
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccC--CCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITG--PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 260 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~--~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~Gyv 260 (1165)
++++|++.+++.+...+.. +....... ... .+.++||+||||||||++|+++|+.++.+++.++++.+.+. |.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~---~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~-~~ 85 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDF-LKYPERYANLGAK---IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FV 85 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCC---CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS-CS
T ss_pred HHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCC---CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh-hc
Confidence 4799999999999887653 22211111 111 23679999999999999999999999999999999887653 54
Q ss_pred ccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCC
Q psy2392 261 GRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDN 340 (1165)
Q Consensus 261 G~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 340 (1165)
|.... .++.+|..
T Consensus 86 ~~~~~-~~~~~~~~------------------------------------------------------------------ 98 (268)
T 2r62_A 86 GLGAS-RVRDLFET------------------------------------------------------------------ 98 (268)
T ss_dssp SSCSS-SSSTTHHH------------------------------------------------------------------
T ss_pred chHHH-HHHHHHHH------------------------------------------------------------------
Confidence 44311 11111111
Q ss_pred cEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccc
Q psy2392 341 KEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQN 420 (1165)
Q Consensus 341 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 420 (1165)
|.. ..+
T Consensus 99 ------------------------------------------------------------------------a~~--~~~ 104 (268)
T 2r62_A 99 ------------------------------------------------------------------------AKK--QAP 104 (268)
T ss_dssp ------------------------------------------------------------------------HHH--SCS
T ss_pred ------------------------------------------------------------------------HHh--cCC
Confidence 111 146
Q ss_pred eEEEEecchhhhccCCCCC--CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--C
Q psy2392 421 GIIFLDEIDKITTRSSQNN--NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 496 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~--~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R 496 (1165)
+||||||||.+...+..+. +.+.....++..||..+++.. -...++++|+++ +.|..+.|++++ |
T Consensus 105 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~v~vi~tt----n~~~~ld~~l~r~~R 173 (268)
T 2r62_A 105 SIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG-------SENAPVIVLAAT----NRPEILDPALMRPGR 173 (268)
T ss_dssp CEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS-------CSCSCCEEEECB----SCCTTSCGGGGSSSS
T ss_pred eEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc-------cCCCCEEEEEec----CCchhcCHhHcCCCC
Confidence 8999999999987653211 122223346677888887632 123457778774 567778899987 9
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
|+..+.|.+++.++..+|+. ..+. ++.+. ++..++.|++.+ .++-.|.|+++++++...
T Consensus 174 f~~~i~i~~p~~~~r~~il~-----------~~~~--~~~~~-~~~~~~~la~~~-------~g~~g~dl~~l~~~a~~~ 232 (268)
T 2r62_A 174 FDRQVLVDKPDFNGRVEILK-----------VHIK--GVKLA-NDVNLQEVAKLT-------AGLAGADLANIINEAALL 232 (268)
T ss_dssp SCCCCBCCCCCTTTHHHHHH-----------HHTS--SSCCC-SSCCTTTTTSSS-------CSSCHHHHHHHHHHHHHT
T ss_pred CCeEEEecCcCHHHHHHHHH-----------HHHh--cCCCC-CccCHHHHHHHc-------CCCCHHHHHHHHHHHHHH
Confidence 99999999999999999984 1122 22211 222244454433 233347888888877643
Q ss_pred hhcccCCCeeEEccccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
... .....|+.+.+.+.+..
T Consensus 233 a~~---~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 233 AGR---NNQKEVRQQHLKEAVER 252 (268)
T ss_dssp TSS---SCCCSCCHHHHHTSCTT
T ss_pred HHH---hccCCcCHHHHHHHHHH
Confidence 211 11124666666555543
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-15 Score=178.06 Aligned_cols=98 Identities=28% Similarity=0.423 Sum_probs=68.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCC-CCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKP-SDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p-~dl~pel~gR~ 1095 (1165)
..+|+||||||.+... .|..||+.+|... +.||+++. .+| ..+.+.|.+||
T Consensus 106 ~~~iLfIDEI~~l~~~-------------~q~~LL~~le~~~------------v~lI~att---~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 106 RRTILFVDEVHRFNKS-------------QQDAFLPHIEDGT------------ITFIGATT---ENPSFELNSALLSRA 157 (447)
T ss_dssp CCEEEEEETTTCC-------------------CCHHHHHTTS------------CEEEEEES---SCGGGSSCHHHHTTE
T ss_pred CCcEEEEeChhhhCHH-------------HHHHHHHHHhcCc------------eEEEecCC---CCcccccCHHHhCce
Confidence 4689999999999765 7889999999632 55666653 344 46889999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+ +.|++|+.+++.++|. ..+.+...-+. +..+.+++++++.|+..+
T Consensus 158 ~v-~~l~~l~~edi~~il~----~~l~~~~~~~~--~~~~~i~~~al~~L~~~~ 204 (447)
T 3pvs_A 158 RV-YLLKSLSTEDIEQVLT----QAMEDKTRGYG--GQDIVLPDETRRAIAELV 204 (447)
T ss_dssp EE-EECCCCCHHHHHHHHH----HHHHCTTTSST--TSSEECCHHHHHHHHHHH
T ss_pred eE-EeeCCcCHHHHHHHHH----HHHHHHhhhhc--cccCcCCHHHHHHHHHHC
Confidence 86 5799999999999998 22221111111 145689999999999884
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-14 Score=173.46 Aligned_cols=178 Identities=28% Similarity=0.450 Sum_probs=126.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++++++.+.+.+.. ++......... ...|+++||+||||||||++|+++|+.++.+|+.++++++.+. |+|.
T Consensus 16 ~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g-~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~-~~g~ 92 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIG-ARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGV 92 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHH-HHCTHHHHTTT-CCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC-CTTH
T ss_pred HHhCCcHHHHHHHHHHHHH-hhChHHHhhcC-CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH-Hhcc
Confidence 6899999999999987753 22111100000 0125789999999999999999999999999999999999876 7775
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
+. ..++.+|..|.
T Consensus 93 ~~-~~~r~lf~~A~------------------------------------------------------------------ 105 (476)
T 2ce7_A 93 GA-ARVRDLFAQAK------------------------------------------------------------------ 105 (476)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred cH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 42 33444443330
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...++|
T Consensus 106 --------------------------------------------------------------------------~~~p~I 111 (476)
T 2ce7_A 106 --------------------------------------------------------------------------AHAPCI 111 (476)
T ss_dssp --------------------------------------------------------------------------HTCSEE
T ss_pred --------------------------------------------------------------------------hcCCCE
Confidence 014679
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~i 1097 (1165)
|||||||.+....+.. ++.+..++.+++.||..++|.. ...++.+|++.. .|..+.|.++ |||..
T Consensus 112 LfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~--------~~~~viVIaaTn----~~~~Ld~allR~gRFd~ 179 (476)
T 2ce7_A 112 VFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD--------SKEGIIVMAATN----RPDILDPALLRPGRFDK 179 (476)
T ss_dssp EEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC--------GGGTEEEEEEES----CGGGSCGGGGSTTSSCE
T ss_pred EEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC--------CCCCEEEEEecC----ChhhhchhhcccCccee
Confidence 9999999998875432 3344455567888998888521 234678888864 5777888887 59999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.+++++.++..+||+
T Consensus 180 ~i~i~~Pd~~~R~~Il~ 196 (476)
T 2ce7_A 180 KIVVDPPDMLGRKKILE 196 (476)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred EeecCCCCHHHHHHHHH
Confidence 99999999999999886
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=155.84 Aligned_cols=78 Identities=31% Similarity=0.425 Sum_probs=57.3
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+++.+...+.. +......... ....+.++||+||||||||++|+++|+.++.+|+.++++++.+. |.|
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~-g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~-~~~ 81 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDY-LKSPERFLQL-GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEV-IGG 81 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHH-HHCCC-------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSS-STT
T ss_pred HHHhCCHHHHHHHHHHHHHH-HHCHHHHHHc-CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhh-ccC
Confidence 36899999999999887753 1111111100 01125789999999999999999999999999999999998765 544
Q ss_pred c
Q psy2392 860 R 860 (1165)
Q Consensus 860 ~ 860 (1165)
.
T Consensus 82 ~ 82 (262)
T 2qz4_A 82 L 82 (262)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-14 Score=162.21 Aligned_cols=161 Identities=15% Similarity=0.131 Sum_probs=98.0
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceee-cCceEEEEEeCCccc-CCCCCCchhhhCCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII-KTDHILFIASGAFHL-AKPSDLIPELQGRF 497 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~-~t~~ilfI~~gaf~~-~~p~~l~pel~~R~ 497 (1165)
.+|+||||||++.+. +|+.|++.+|...++...... ...++++|++.+-.. .....+.|+|++||
T Consensus 110 ~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 110 SNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (331)
T ss_dssp SSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred ccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe
Confidence 479999999998655 677899999876655422111 123456666632110 01123899999999
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHh-------------HHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC------
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVC-------------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT------ 558 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~-------------l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~------ 558 (1165)
.+.+.+.+++.++..+||...... -+....+.. . ++.+++++++.+++.+.......
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~--~v~~~~~~~~~i~~~~~~~r~~~~~~~~~ 252 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI--N--KVTISESLEKYIIELVFATRFPAEYGLEA 252 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH--H--TCBCCHHHHHHHHHHHHHHHSGGGGTCHH
T ss_pred eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh--c--cCCCCHHHHHHHHHHHHHHhccccccccc
Confidence 999999999999999999632110 011111111 2 45788999999998875431111
Q ss_pred ------CccCcchhHHHHHHHHHHhhcccCCCeeEEcccccccccccC
Q psy2392 559 ------ENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 559 ------~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
-..+.|.+.+++..+..-...+ .. -.|+.+.|++.+...
T Consensus 253 ~~~~~~~~~s~R~~~~ll~~a~a~A~l~--g~-~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 253 EASYILYGASTRAAINLNRVAKAMAFFN--NR-DYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHEEECCCHHHHHHHHHHHHHHHHHT--TC-SBCCHHHHHHHHHHH
T ss_pred cccccccCcChhHHHHHHHHHHHHHHHc--CC-CCCCHHHHHHHHHHH
Confidence 1235788888877654333222 11 236777776655543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.54 E-value=8.4e-14 Score=152.56 Aligned_cols=178 Identities=28% Similarity=0.434 Sum_probs=123.9
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|++.+++.+...+.. +.......... ...+.+++|+||||||||++|+++|+.++.+|+.++++++.+. |.|.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~-~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~-~~~~ 88 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGV 88 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCCC
T ss_pred HHhcCcHHHHHHHHHHHHH-HhCHHHHHHcC-CCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH-hhhh
Confidence 6899999999999887653 21111111100 0125789999999999999999999999999999999998766 6666
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++.+|..+.
T Consensus 89 ~~-~~~~~~~~~a~------------------------------------------------------------------ 101 (257)
T 1lv7_A 89 GA-SRVRDMFEQAK------------------------------------------------------------------ 101 (257)
T ss_dssp CH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred hH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 53 23444433220
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
...+++
T Consensus 102 --------------------------------------------------------------------------~~~~~i 107 (257)
T 1lv7_A 102 --------------------------------------------------------------------------KAAPCI 107 (257)
T ss_dssp --------------------------------------------------------------------------TTCSEE
T ss_pred --------------------------------------------------------------------------HcCCee
Confidence 013579
Q ss_pred eeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCe
Q psy2392 1021 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i 1097 (1165)
+||||||.+........ +........+..+|..+++.. ...++++|++. +.|..+.|.+.+ ||..
T Consensus 108 l~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~~vI~~t----n~~~~l~~~l~r~~rf~~ 175 (257)
T 1lv7_A 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPGRFDR 175 (257)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--------SSSCEEEEEEE----SCTTTSCGGGGSTTSSCE
T ss_pred ehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc--------cCCCEEEEEee----CCchhCCHHHcCCCcCCe
Confidence 99999999987654321 112222235566777777531 24567788875 467788899986 9999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.+..++.++..+|++
T Consensus 176 ~i~i~~P~~~~r~~il~ 192 (257)
T 1lv7_A 176 QVVVGLPDVRGREQILK 192 (257)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHH
Confidence 99999999999998887
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-13 Score=157.23 Aligned_cols=157 Identities=16% Similarity=0.206 Sum_probs=99.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-ecee--ecCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~--~~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
.++|+||||||++... +|..|+..+|.+.... ..|. ....++.+|++++. .+..+.|+|++
T Consensus 144 ~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~---~~~~l~~~L~~ 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP---EEGDLRPQLLD 207 (350)
T ss_dssp TTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS---CSCCCCHHHHT
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC---CCCCCCHHHHh
Confidence 4789999999999765 6778999888643221 1111 11236778887542 12469999999
Q ss_pred CCCeeEecCCC-CHHHHHHHHhhhh----------------HhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 496 RFPIRVELDSL-SISDFTRIMTSTN----------------VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 496 R~~~~v~~~~L-~~~~l~~Il~~~~----------------~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
||++.+.|.++ +.++..+|+.... ...+...........-.+.+++++++.|++.+...
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~---- 283 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIAL---- 283 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHS----
T ss_pred hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh----
Confidence 99999999999 5666667875310 00011111111112224589999999999999874
Q ss_pred Ccc-CcchhHHHHHHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 559 ENI-GARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 559 ~~~-GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+. ++|.+.++++.+..-...+ +. -.|+.+.|++.+..
T Consensus 284 -~~~~~R~~~~ll~~a~~~A~~~--~~-~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 284 -GSDGLRGELTLLRSARALAALE--GA-TAVGRDHLKRVATM 321 (350)
T ss_dssp -SSCSHHHHHHHHHHHHHHHHHT--TC-SBCCHHHHHHHHHH
T ss_pred -CCCCccHHHHHHHHHHHHHHHc--CC-CcCCHHHHHHHHHH
Confidence 44 7899999998765433221 11 23677777665543
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=159.11 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=75.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
++|+||||||.+... .|..|+.++|...... +.......+.+|++. ..+.|..+.|.|++||.+
T Consensus 190 ~~vl~IDEi~~l~~~-------------~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t--~~~~~~~l~~~l~sR~~~ 253 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIE-------------SFSFLNRALESDMAPV-LIMATNRGITRIRGT--SYQSPHGIPIDLLDRLLI 253 (368)
T ss_dssp BCEEEEESGGGSBHH-------------HHHHHHHHTTCTTCCE-EEEEESCSEEECBTS--SCEEETTCCHHHHTTEEE
T ss_pred CceEEEhhccccChH-------------HHHHHHHHhhCcCCCe-eeeecccceeeeecc--CCCCcccCCHHHHhhccE
Confidence 479999999999754 7889999998754332 111122223333333 233467899999999988
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+.|++|+.+++.+||+ ..+..+++ .+++++++.|++.+..
T Consensus 254 -i~~~~~~~~e~~~il~-----------~~~~~~~~--~~~~~~l~~l~~~~~~ 293 (368)
T 3uk6_A 254 -VSTTPYSEKDTKQILR-----------IRCEEEDV--EMSEDAYTVLTRIGLE 293 (368)
T ss_dssp -EEECCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHHHH
T ss_pred -EEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHhcC
Confidence 6999999999999998 22344565 6899999999998873
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=168.86 Aligned_cols=235 Identities=23% Similarity=0.357 Sum_probs=148.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|+++++..+.+.+.. ++........... .+.+++|+||||||||+||+++|..++.+|+.++++++.+. |+|.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~-ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~-~~g~ 107 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGV 107 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCC-CCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS-CTTH
T ss_pred HHcCCcHHHHHHHHHHHHH-hhchhhhhhccCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh-hhhh
Confidence 4799999999999887653 2232222222111 24679999999999999999999999999999999988653 5543
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.+|+.+
T Consensus 108 ~-~~~v~~lfq~a------------------------------------------------------------------- 119 (499)
T 2dhr_A 108 G-AARVRDLFETA------------------------------------------------------------------- 119 (499)
T ss_dssp H-HHHHHHHTTTS-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 3 11122222110
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
....++|
T Consensus 120 -------------------------------------------------------------------------~~~~p~i 126 (499)
T 2dhr_A 120 -------------------------------------------------------------------------KRHAPCI 126 (499)
T ss_dssp -------------------------------------------------------------------------SSSSSCE
T ss_pred -------------------------------------------------------------------------HhcCCCE
Confidence 0013689
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCe
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~ 499 (1165)
+||||||.+........ +.....+...+.||..++|.. ....+++|++. +.|..+.|+|++ ||+.
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~--------~~~~viviAat----n~p~~LD~aLlr~gRfdr 194 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPGRFDR 194 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC--------SSCCCEEEECC----SCGGGSCTTTSSTTSSCC
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc--------cCccEEEEEec----CChhhcCcccccccccce
Confidence 99999999987654311 112223345567787777643 23456677774 567779999985 9999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH-HHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a-~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.|.|..++.++..+||+. . ..++ .+++++ +..|+... +.+-+|-|.++++++.....
T Consensus 195 ~i~i~~Pd~~~R~~IL~~----~---------~~~~--~l~~dv~l~~lA~~t-------~G~~gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 195 QIAIDAPDVKGREQILRI----H---------ARGK--PLAEDVDLALLAKRT-------PGFVGADLENLLNEAALLAA 252 (499)
T ss_dssp EEECCCCCHHHHHHHHHH----T---------TSSS--CCCCSSTTHHHHTTS-------CSCCHHHHHHHHHHHHHHHT
T ss_pred EEecCCCCHHHHHHHHHH----H---------HhcC--CCChHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999841 1 1233 333333 45554433 33445788888887654332
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
.. ....|+.+.+.+.+.
T Consensus 253 ~~---~~~~It~~dl~~al~ 269 (499)
T 2dhr_A 253 RE---GRRKITMKDLEEAAD 269 (499)
T ss_dssp TT---CCSSCCSHHHHHHHH
T ss_pred Hh---CCCccCHHHHHHHHH
Confidence 11 112356555555444
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-14 Score=159.85 Aligned_cols=174 Identities=28% Similarity=0.459 Sum_probs=119.2
Q ss_pred hcccchHHHHHHHHHHHHhH-----hhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNR-----WRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~-----~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
++|+|++.+++.+...+... +...+.. .+.++||+||||||||++|+++|+.++.+|+.++++.+.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAK-------IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCC-------CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCC-------CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 68999999999998876531 1111111 14679999999999999999999999999999999887665
Q ss_pred cccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCC
Q psy2392 856 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 935 (1165)
Q Consensus 856 GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ 935 (1165)
|.|.... .++.+|..
T Consensus 84 -~~~~~~~-~~~~~~~~--------------------------------------------------------------- 98 (268)
T 2r62_A 84 -FVGLGAS-RVRDLFET--------------------------------------------------------------- 98 (268)
T ss_dssp -CSSSCSS-SSSTTHHH---------------------------------------------------------------
T ss_pred -hcchHHH-HHHHHHHH---------------------------------------------------------------
Confidence 5554421 11111111
Q ss_pred CCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhh
Q psy2392 936 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 1015 (1165)
Q Consensus 936 ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~ 1015 (1165)
|..
T Consensus 99 ---------------------------------------------------------------------------a~~-- 101 (268)
T 2r62_A 99 ---------------------------------------------------------------------------AKK-- 101 (268)
T ss_dssp ---------------------------------------------------------------------------HHH--
T ss_pred ---------------------------------------------------------------------------HHh--
Confidence 110
Q ss_pred hcCCeeeehhhhhhhccCCCC--CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1016 EQNGIIFLDEIDKITTRSSQN--NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1016 ~~~gIvfiDEiDki~~~~~~~--~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
..++|+||||||.+....... .+.+......+..||..+++.. -...++++|++. +.|..+.|.+++
T Consensus 102 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~v~vi~tt----n~~~~ld~~l~r 170 (268)
T 2r62_A 102 QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG-------SENAPVIVLAAT----NRPEILDPALMR 170 (268)
T ss_dssp SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS-------CSCSCCEEEECB----SCCTTSCGGGGS
T ss_pred cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc-------cCCCCEEEEEec----CCchhcCHhHcC
Confidence 146899999999998764221 1122233346778888888632 123457777775 366778889987
Q ss_pred --cCCeEEEcCCCCHHHHHHHHh
Q psy2392 1094 --RFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1094 --R~~i~v~l~~l~~~~l~~il~ 1114 (1165)
||...+.|++++.++..+|++
T Consensus 171 ~~Rf~~~i~i~~p~~~~r~~il~ 193 (268)
T 2r62_A 171 PGRFDRQVLVDKPDFNGRVEILK 193 (268)
T ss_dssp SSSSCCCCBCCCCCTTTHHHHHH
T ss_pred CCCCCeEEEecCcCHHHHHHHHH
Confidence 999999999999999999987
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=160.61 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=97.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC-CCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS-DLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~-~l~pel~~R~ 497 (1165)
...||||||||.+. . |+.|+++++= ......++.+|+.++-. ..|. .+.|.+++||
T Consensus 132 ~~~ii~lDE~d~l~--~-------------q~~L~~l~~~-------~~~~~s~~~vI~i~n~~-d~~~~~L~~~v~SR~ 188 (318)
T 3te6_A 132 RKTLILIQNPENLL--S-------------EKILQYFEKW-------ISSKNSKLSIICVGGHN-VTIREQINIMPSLKA 188 (318)
T ss_dssp CEEEEEEECCSSSC--C-------------THHHHHHHHH-------HHCSSCCEEEEEECCSS-CCCHHHHHTCHHHHT
T ss_pred CceEEEEecHHHhh--c-------------chHHHHHHhc-------ccccCCcEEEEEEecCc-ccchhhcchhhhccC
Confidence 46799999999998 2 2355555541 01234577888887632 3343 3567788999
Q ss_pred C-eeEecCCCCHHHHHHHHhhhhHhHHHHHHH-HH-------------------------hhcCCeeEeCHHHHHHHHHH
Q psy2392 498 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEA-LL-------------------------ATEGIKIEFVDDGIQRLAEI 550 (1165)
Q Consensus 498 ~-~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~-ll-------------------------~~~~i~l~~~~~a~~~la~~ 550 (1165)
. .++.|+|++.+++.+||+ + .+..... .+ ...++.+.++++|++.+|+.
T Consensus 189 ~~~~i~F~pYt~~el~~Il~---~-Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~ 264 (318)
T 3te6_A 189 HFTEIKLNKVDKNELQQMII---T-RLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKN 264 (318)
T ss_dssp TEEEEECCCCCHHHHHHHHH---H-HHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHH---H-HHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHH
Confidence 6 578999999999999995 1 1111100 00 00013457899999999998
Q ss_pred HHhccccCCccCcchhHHHHHHHHHHhhccc------CCCeeEEccccccccccc
Q psy2392 551 AYCINERTENIGARRLYTAMEKLLEEVSFNS------NNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 551 a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~------~~~~~~i~~~~v~~~~~~ 599 (1165)
+... +++||+...++++.++-..-+. .+...+||.+.+.+..++
T Consensus 265 vA~~-----~GD~R~Al~ilr~A~~~ae~e~~~k~~~~~~~~~i~~~~~~~~~~~ 314 (318)
T 3te6_A 265 VANV-----SGSTEKAFKICEAAVEISKKDFVRKGGLQKGKLVVSQEMVPRYFSE 314 (318)
T ss_dssp HHHH-----HCSHHHHHHHHHHHHHHHHHHHHHHTTEETTEECCSEECCTHHHHH
T ss_pred HHhh-----CChHHHHHHHHHHHHHHHHHHHHhccCCCCCcEEeeHHHHHHHHHH
Confidence 7663 7899999999999887553321 122267777777665543
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-14 Score=161.82 Aligned_cols=100 Identities=20% Similarity=0.352 Sum_probs=79.0
Q ss_pred cCCeeeehhhhhhh-ccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccC
Q psy2392 1017 QNGIIFLDEIDKIT-TRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~-~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~ 1095 (1165)
..+|+||||||.+. .. .|..|+.++|... .++.||+++ +.+..+.|.|.+||
T Consensus 105 ~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~~----------~~~~iI~~~----n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAYS----------SNCSIIITA----NNIDGIIKPLQSRC 157 (324)
T ss_dssp CEEEEEEESCCCGGGHH-------------HHHHHHHHHHHHG----------GGCEEEEEE----SSGGGSCTTHHHHS
T ss_pred CCeEEEEECCcccCcHH-------------HHHHHHHHHHhCC----------CCcEEEEEe----CCccccCHHHHhhC
Confidence 35799999999997 43 7889999998532 345566654 35667999999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCH-HHHHHHHHHHh
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVD-DGIQRLAEIAY 1150 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~-~ai~~ia~~a~ 1150 (1165)
.+ ++|++++.++..+|+. .+.......+..+|+ .+++ ++++.|++.+.
T Consensus 158 ~~-i~~~~~~~~e~~~il~----~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~ 206 (324)
T 3u61_B 158 RV-ITFGQPTDEDKIEMMK----QMIRRLTEICKHEGI--AIADMKVVAALVKKNF 206 (324)
T ss_dssp EE-EECCCCCHHHHHHHHH----HHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTC
T ss_pred cE-EEeCCCCHHHHHHHHH----HHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCC
Confidence 74 8999999999999888 566666777788888 6778 99999998753
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-14 Score=155.32 Aligned_cols=181 Identities=22% Similarity=0.357 Sum_probs=119.6
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccc
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVG 856 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~G 856 (1165)
..-|++|+|.+++++.|.+.+..++........... ..+++++|+||||||||+|++++|..++.+++.++++++.+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l-~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGL-VTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM- 83 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTC-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS-
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh-
Confidence 344689999999999999988765543322111110 114679999999999999999999999999999999988765
Q ss_pred ccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCC
Q psy2392 857 YVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 936 (1165)
Q Consensus 857 yvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~l 936 (1165)
|+|.. +..++.+|..+.
T Consensus 84 ~~~~~-~~~i~~vf~~a~-------------------------------------------------------------- 100 (274)
T 2x8a_A 84 YVGES-ERAVRQVFQRAK-------------------------------------------------------------- 100 (274)
T ss_dssp TTHHH-HHHHHHHHHHHH--------------------------------------------------------------
T ss_pred hhhHH-HHHHHHHHHHHH--------------------------------------------------------------
Confidence 66544 223444433220
Q ss_pred CCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy2392 937 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE 1016 (1165)
Q Consensus 937 d~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~ 1016 (1165)
..
T Consensus 101 ------------------------------------------------------------------------------~~ 102 (274)
T 2x8a_A 101 ------------------------------------------------------------------------------NS 102 (274)
T ss_dssp ------------------------------------------------------------------------------HT
T ss_pred ------------------------------------------------------------------------------hc
Confidence 01
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--c
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 1094 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R 1094 (1165)
.++|+|+||||.++...... ..+. ...+.+.++..+.|. .....++++++. ++|..+.|+|++ |
T Consensus 103 ~p~i~~~Deid~~~~~r~~~-~~~~-~~~~~~~~l~~Lsgg--------~~~~~~i~ia~t----n~p~~LD~al~r~gR 168 (274)
T 2x8a_A 103 APCVIFFDEVDALCPRRSDR-ETGA-SVRVVNQLLTEMDGL--------EARQQVFIMAAT----NRPDIIDPAILRPGR 168 (274)
T ss_dssp CSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTC--------CSTTCEEEEEEE----SCGGGSCHHHHSTTS
T ss_pred CCCeEeeehhhhhhcccCCC-cchH-HHHHHHHHHHhhhcc--------cccCCEEEEeec----CChhhCCHhhcCccc
Confidence 45799999999987653221 1111 112444555556553 233445666664 588889999985 9
Q ss_pred CCeEEEcCCCCHHHHHHHHh
Q psy2392 1095 FPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|...+.++.++.++..+||+
T Consensus 169 fd~~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 169 LDKTLFVGLPPPADRLAILK 188 (274)
T ss_dssp SCEEEECCSCCHHHHHHHHH
T ss_pred CCeEEEeCCcCHHHHHHHHH
Confidence 99999999999999999997
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=154.48 Aligned_cols=178 Identities=22% Similarity=0.373 Sum_probs=120.3
Q ss_pred cccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccccccc
Q psy2392 182 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 261 (1165)
Q Consensus 182 ~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG 261 (1165)
.++|.|.+++++.+.+.+..+++...+....... .+.+++|+||||||||+|++++|..++.+++.++..++.+. |+|
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~-~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~-~~~ 86 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLV-TPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM-YVG 86 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS-TTH
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCC-CCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh-hhh
Confidence 4589999999999999887665554332221111 23569999999999999999999999999999999887653 554
Q ss_pred cchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCc
Q psy2392 262 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 341 (1165)
Q Consensus 262 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~ 341 (1165)
.. ...+..+|+.+
T Consensus 87 ~~-~~~i~~vf~~a------------------------------------------------------------------ 99 (274)
T 2x8a_A 87 ES-ERAVRQVFQRA------------------------------------------------------------------ 99 (274)
T ss_dssp HH-HHHHHHHHHHH------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHHH------------------------------------------------------------------
Confidence 33 22233333220
Q ss_pred EEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccce
Q psy2392 342 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 421 (1165)
Q Consensus 342 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 421 (1165)
.. ..++
T Consensus 100 ------------------------------------------------------------------------~~--~~p~ 105 (274)
T 2x8a_A 100 ------------------------------------------------------------------------KN--SAPC 105 (274)
T ss_dssp ------------------------------------------------------------------------HH--TCSE
T ss_pred ------------------------------------------------------------------------Hh--cCCC
Confidence 00 1478
Q ss_pred EEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCe
Q psy2392 422 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 499 (1165)
Q Consensus 422 IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~ 499 (1165)
|+|+||||.+...+.... .+. ...+.+.++..++|+. ....++++++ +++|..++|+|+. ||+.
T Consensus 106 i~~~Deid~~~~~r~~~~-~~~-~~~~~~~~l~~Lsgg~--------~~~~~i~ia~----tn~p~~LD~al~r~gRfd~ 171 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRE-TGA-SVRVVNQLLTEMDGLE--------ARQQVFIMAA----TNRPDIIDPAILRPGRLDK 171 (274)
T ss_dssp EEEEETCTTTCC-----------CTTHHHHHHHHHHTCC--------STTCEEEEEE----ESCGGGSCHHHHSTTSSCE
T ss_pred eEeeehhhhhhcccCCCc-chH-HHHHHHHHHHhhhccc--------ccCCEEEEee----cCChhhCCHhhcCcccCCe
Confidence 999999999876533211 111 1234556777777642 2345566666 3688899999985 9999
Q ss_pred eEecCCCCHHHHHHHHh
Q psy2392 500 RVELDSLSISDFTRIMT 516 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~ 516 (1165)
.|.+..++.++..+|++
T Consensus 172 ~i~~~~P~~~~r~~il~ 188 (274)
T 2x8a_A 172 TLFVGLPPPADRLAILK 188 (274)
T ss_dssp EEECCSCCHHHHHHHHH
T ss_pred EEEeCCcCHHHHHHHHH
Confidence 99999999999999994
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=152.27 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=80.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch-hhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP-ELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p-el~~R~ 497 (1165)
+++||||||||++...... +.. ....+++.|+.++++.. ....++++|++. +.|..+.+ .+.+||
T Consensus 124 ~~~vl~iDEid~l~~~~~~--~~~-~~~~~l~~L~~~~~~~~-------~~~~~~~ii~tt----n~~~~l~~~~l~~rf 189 (272)
T 1d2n_A 124 QLSCVVVDDIERLLDYVPI--GPR-FSNLVLQALLVLLKKAP-------PQGRKLLIIGTT----SRKDVLQEMEMLNAF 189 (272)
T ss_dssp SEEEEEECCHHHHTTCBTT--TTB-CCHHHHHHHHHHTTCCC-------STTCEEEEEEEE----SCHHHHHHTTCTTTS
T ss_pred CCcEEEEEChhhhhccCCC--Chh-HHHHHHHHHHHHhcCcc-------CCCCCEEEEEec----CChhhcchhhhhccc
Confidence 4789999999999755322 111 12345667777776521 123467777774 34444555 678999
Q ss_pred CeeEecCCCCH-HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 498 PIRVELDSLSI-SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 498 ~~~v~~~~L~~-~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
..++.|++|+. +++.+++.. . ..+++++++.|++.+..+. -.+++|.+.++++.+.
T Consensus 190 ~~~i~~p~l~~r~~i~~i~~~--------------~----~~~~~~~~~~l~~~~~g~~---~~g~ir~l~~~l~~a~ 246 (272)
T 1d2n_A 190 STTIHVPNIATGEQLLEALEL--------------L----GNFKDKERTTIAQQVKGKK---VWIGIKKLLMLIEMSL 246 (272)
T ss_dssp SEEEECCCEEEHHHHHHHHHH--------------H----TCSCHHHHHHHHHHHTTSE---EEECHHHHHHHHHHHT
T ss_pred ceEEcCCCccHHHHHHHHHHh--------------c----CCCCHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHh
Confidence 99999999988 777776631 1 1468999999998874310 1237999999988764
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-13 Score=156.34 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=76.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec-cCceEEEEecCCCCC-CCCCCCchhhhccC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII-KTDHILFIASGAFHL-AKPSDLIPELQGRF 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~-~t~~ilfI~~gaf~~-~~p~dl~pel~gR~ 1095 (1165)
.+|+||||||++... +|..|+..+|...+...-... ...++.+|++..-.. .....+.|.|++||
T Consensus 110 ~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf 176 (331)
T 2r44_A 110 SNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF 176 (331)
T ss_dssp SSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS
T ss_pred ccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe
Confidence 479999999998654 889999999876655411111 122455665533100 01113889999999
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHH-------------hHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVC-------------LTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~-------------l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+++.+++++.++..+||+.--.. -+....... .+ +.+++++++.|+.++..
T Consensus 177 ~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~--v~~~~~~~~~i~~~~~~ 241 (331)
T 2r44_A 177 MMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEI--NK--VTISESLEKYIIELVFA 241 (331)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHH--HT--CBCCHHHHHHHHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHh--cc--CCCCHHHHHHHHHHHHH
Confidence 999999999999999999732110 011111221 24 47899999999987753
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-13 Score=150.48 Aligned_cols=118 Identities=14% Similarity=0.261 Sum_probs=84.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeec--------eeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKY--------GIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~--------~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
.+++|||||||.+... .|..|+..++...+..-. ......++.+|+++ +.+..+.
T Consensus 90 ~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t----~~~~~~~ 152 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT----TRPGLIT 152 (324)
T ss_dssp TTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE----SCCSSCS
T ss_pred CCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC----CCcccCC
Confidence 4689999999998754 566888888765432100 01122356778774 4566789
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
|.|.+||+..+.|.+|+.+++.+++. ..+...+ +.+++++++.|+..+ .+..|.+.+++
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~-----------~~~~~~~--~~~~~~~~~~l~~~~--------~G~~r~l~~~l 211 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVM-----------RDARLLG--VRITEEAALEIGRRS--------RGTMRVAKRLF 211 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHH-----------HHHHTTT--CCCCHHHHHHHHHHS--------CSCHHHHHHHH
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHH-----------HHHHhcC--CCCCHHHHHHHHHHc--------cCCHHHHHHHH
Confidence 99999998889999999999988874 1223334 468999999998875 35568888888
Q ss_pred HHHH
Q psy2392 571 EKLL 574 (1165)
Q Consensus 571 e~~l 574 (1165)
+++.
T Consensus 212 ~~~~ 215 (324)
T 1hqc_A 212 RRVR 215 (324)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7764
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-13 Score=147.44 Aligned_cols=125 Identities=21% Similarity=0.298 Sum_probs=77.7
Q ss_pred cceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--
Q psy2392 419 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~-- 495 (1165)
.++++||||||.+........ ............++..++|.. ....++++++ +++|..+.|++++
T Consensus 108 ~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~--------~~~~~i~~a~----t~~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 108 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAA----TNRPDILDPALLRPG 175 (254)
T ss_dssp SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC--------TTCCEEEEEE----ESCGGGSCGGGGSTT
T ss_pred CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC--------CCCCEEEEEc----cCCchhCCHHHcCCC
Confidence 368999999999986643211 111122334556777777642 2234555555 3678889999986
Q ss_pred CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH-HHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 496 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a-~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
||+..+.|..++.++..+|++ .. . .+. .+++++ +..|+... +++-+|-|.++++++.
T Consensus 176 rf~~~i~i~~p~~~~r~~il~----~~-------~--~~~--~~~~~~~~~~la~~~-------~G~~~~dl~~~~~~a~ 233 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILR----IH-------A--RGK--PLAEDVDLALLAKRT-------PGFVGADLENLLNEAA 233 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHH----HH-------H--TTS--CBCTTCCHHHHHHTC-------TTCCHHHHHHHHHHHH
T ss_pred cCCeEEeeCCcCHHHHHHHHH----HH-------H--cCC--CCCcccCHHHHHHHc-------CCCCHHHHHHHHHHHH
Confidence 999999999999999999984 11 1 233 233333 55665544 2344578888888776
Q ss_pred HHh
Q psy2392 575 EEV 577 (1165)
Q Consensus 575 ~~~ 577 (1165)
...
T Consensus 234 ~~a 236 (254)
T 1ixz_A 234 LLA 236 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=152.38 Aligned_cols=129 Identities=19% Similarity=0.247 Sum_probs=87.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeecee--ecCceEEEEEeCCcccC---CCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHLA---KPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~--~~t~~ilfI~~gaf~~~---~p~~l~pel 493 (1165)
.+++|||||||++... +|..|+.+++...+. +.|. ....++.+|++++.... ....|.|.|
T Consensus 100 ~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L 165 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELE-RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165 (265)
T ss_dssp TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEEC-CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCee-cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHH
Confidence 4789999999999764 777899999865432 1111 11235667777543210 012478999
Q ss_pred hCCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCee--EeCHHHHHHHHHHHHhccccCCccCcchhHH
Q psy2392 494 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI--EFVDDGIQRLAEIAYCINERTENIGARRLYT 568 (1165)
Q Consensus 494 ~~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l--~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~ 568 (1165)
.+||. +.+.+++|.. +|+..++. ..+.+.. ...+..+ .+++++++.|....+ .++.|.|++
T Consensus 166 ~~Rl~~~~i~lp~L~~R~~di~~l~~----~~l~~~~---~~~~~~~~~~~~~~a~~~L~~~~~-------~gn~reL~~ 231 (265)
T 2bjv_A 166 LDALAFDVVQLPPLRERESDIMLMAE----YFAIQMC---REIKLPLFPGFTERARETLLNYRW-------PGNIRELKN 231 (265)
T ss_dssp HHHHCSEEEECCCGGGCHHHHHHHHH----HHHHHHH---HHTTCSSCCCBCHHHHHHHHHSCC-------TTHHHHHHH
T ss_pred HHhhcCcEEeCCChhhhhHHHHHHHH----HHHHHHH---HHhCCCcccCcCHHHHHHHHhCCC-------CCCHHHHHH
Confidence 99995 6789999987 77777763 3333322 3345544 799999999986543 367899999
Q ss_pred HHHHHHH
Q psy2392 569 AMEKLLE 575 (1165)
Q Consensus 569 ~ie~~l~ 575 (1165)
++++++.
T Consensus 232 ~l~~~~~ 238 (265)
T 2bjv_A 232 VVERSVY 238 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-13 Score=154.93 Aligned_cols=103 Identities=17% Similarity=0.346 Sum_probs=76.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--------eccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--------IIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--------~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
..+++||||||.+... .|..|+.+++...+..-.+ .....++.+|+++. .+..+.
T Consensus 90 ~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~----~~~~~~ 152 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATT----RPGLIT 152 (324)
T ss_dssp TTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEES----CCSSCS
T ss_pred CCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCC----CcccCC
Confidence 5689999999998754 7888999888654321000 11223577888754 566788
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.|.+||...+.|.+++.+|+..++. ..+...|+ .+++++++.|+..+
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 200 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVM-----------RDARLLGV--RITEEAALEIGRRS 200 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHS
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc
Confidence 99999998889999999999988887 23344454 68899999998875
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=137.56 Aligned_cols=123 Identities=24% Similarity=0.296 Sum_probs=88.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+++|||||+|.+... .+..|+.+++.. ..++.+|+++ +.+..+.|.|.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~~----~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (226)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcCHHHHHhCc
Confidence 4789999999998754 455788777642 2344555553 345678899999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+|+.+++.+++. ..+...|+ .+++++++.|++.+ ++..|.+.++++++....
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS--------GGDFRKAINALQGAAAIG- 211 (226)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTC-
T ss_pred -eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcC-
Confidence 78999999999998884 12233354 48899999998766 467888999988876421
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
-.||.+.|++.++
T Consensus 212 -------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -------EVVDADTIYQITA 224 (226)
T ss_dssp -------SCBCHHHHHHHHH
T ss_pred -------ceecHHHHHHHhc
Confidence 1377777766543
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-14 Score=169.58 Aligned_cols=123 Identities=20% Similarity=0.280 Sum_probs=100.8
Q ss_pred cccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHHHHhh----
Q psy2392 16 EKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG---- 89 (1165)
Q Consensus 16 ~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE~~h~---- 89 (1165)
+.+|+.|+| +|++|+++||||||+.+|+++++.|++|.|| |+ .| .|++|+.+++..||+++..+|+.||+
T Consensus 275 ~~~~a~~~L~~~L~~g~v~vI~at~~~e~~~~~~~~~al~~R--f~-~i-~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~ 350 (468)
T 3pxg_A 275 AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERR--FQ-PI-QVDQPSVDESIQILQGLRDRYEAHHRVSIT 350 (468)
T ss_dssp C--------CCCTTSSSCEEEEECCTTTTHHHHTTCSHHHHS--EE-EE-ECCCCCHHHHHHHHHHTTTTSGGGSSCSCC
T ss_pred CchhHHHHHHHhhcCCCEEEEecCCHHHHHHHhhcCHHHHHh--Cc-cc-eeCCCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 456888988 9999999999999999999999999999999 99 45 59999999999999999999999998
Q ss_pred -HHHHHHHHHHHhhcCCCCchhH--HHHHhhhhhhhhhhccCCCCccCcccccccc
Q psy2392 90 -NLMRASVELAKEWRNDRTLRRL--EAMLLTANRETTLIITGNGDVLEPENGIGAI 142 (1165)
Q Consensus 90 -~al~~~v~ls~rYi~~r~lPDk--alld~a~a~~~~~~~~~~~~~~~~e~~~~~~ 142 (1165)
+++.+++.++++|++++++||+ +++|.+|++.+....+.+.+...+++.+..+
T Consensus 351 ~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l 406 (468)
T 3pxg_A 351 DDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEV 406 (468)
T ss_dssp HHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 9999999999999999999997 4589999988876555555555555555444
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-13 Score=153.53 Aligned_cols=121 Identities=17% Similarity=0.252 Sum_probs=79.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccce-eeeeec--cCceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVN-TKYGII--KTDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~-~k~~~~--~t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
..||+||||||++... +|..|+.++|..... ++.|.. ...++.+|+++.- .+..+.|.|.+
T Consensus 144 ~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~---~~~~l~~~L~~ 207 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNP---EEGDLRPQLLD 207 (350)
T ss_dssp TTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECS---CSCCCCHHHHT
T ss_pred CCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCC---CCCCCCHHHHh
Confidence 5789999999999765 888999999864322 122211 1236788887652 23468999999
Q ss_pred cCCeEEEcCCC-CHHHHHHHHhhh----------------HHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccC
Q psy2392 1094 RFPIRVELDSL-SISDFTRIMTST----------------NVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCIN 1153 (1165)
Q Consensus 1094 R~~i~v~l~~l-~~~~l~~il~~~----------------~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~ 1153 (1165)
||.++++|+++ ..++..+|+..- +...+..+........-.+.+++++++.|+..+...|
T Consensus 208 R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~ 284 (350)
T 1g8p_A 208 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG 284 (350)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS
T ss_pred hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999 566666887631 0011111111111222234899999999999998763
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=147.39 Aligned_cols=107 Identities=27% Similarity=0.377 Sum_probs=81.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.++||||||+|.+.+. .|+.|+..+|.. ..++.||+++ +.+..+.|.+.+|+.
T Consensus 110 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD-------------AQQALRRTMEMF----------SSNVRFILSC----NYSSKIIEPIQSRCA 162 (327)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHHTEE
T ss_pred CCeEEEEeCCCcCCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CCccccCHHHHhhCc
Confidence 4789999999999754 566899888742 2345566653 356678999999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.+.|.+|+.+++.+++. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++++.
T Consensus 163 -~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 163 -IFRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA--------EGDMRRAINILQAAA 216 (327)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--EECHHHHHHHHHHH--------TTCHHHHHHHHHHHH
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHC--------CCCHHHHHHHHHHHH
Confidence 57999999999998884 22334555 68999999999877 467888888887664
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.7e-13 Score=148.18 Aligned_cols=107 Identities=24% Similarity=0.325 Sum_probs=81.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.++||||||+|.+.+. .|+.|+.++|.. ..++.||+++ +.+..+.|.|.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (319)
T ss_dssp CCEEEEEETGGGSCHH-------------HHHTTGGGTSSS----------SSSEEEEEEE----SCGGGSCHHHHTTCE
T ss_pred CceEEEEeCCCcCCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcchHHHhhCe
Confidence 4789999999999754 566899999852 3455566664 356678999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.+.|.+++.+++.+++. ..+..+|+ .+++++++.|+..+ ++..|.+.+.++++.
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~--------~G~~r~~~~~l~~~~ 208 (319)
T 2chq_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS--------GGDFRKAINALQGAA 208 (319)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTCC--CBCHHHHHHHHHTT--------TTCHHHHHHHHHHHH
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 68999999999988883 22344555 68899999998654 567888888888764
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.4e-13 Score=148.23 Aligned_cols=72 Identities=25% Similarity=0.237 Sum_probs=50.6
Q ss_pred HHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 776 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 776 ~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
...+...++|+..+.+.+.............. .. ..+.++||+||||||||++|+++|+.++.+|+.+++++
T Consensus 28 ~~~~~~~~i~~~~~~~~i~~~~~~l~~~l~~~-~~---~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~ 99 (272)
T 1d2n_A 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNS-DR---TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD 99 (272)
T ss_dssp TTTCTTCCCCCSHHHHHHHHHHHHHHHHHHHC-SS---CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHhcc-CC---CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH
Confidence 33445678899888777766422111111100 01 12589999999999999999999999999999998876
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=146.92 Aligned_cols=140 Identities=17% Similarity=0.270 Sum_probs=92.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee--------eceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~--------~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
...|+||||+|.+.+. ++..|++.++...... +........+.+|++ ++.|..+.
T Consensus 102 ~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a----t~~~~~Ls 164 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA----TTRSGLLS 164 (334)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CCCEEEEE----ESCGGGSC
T ss_pred CCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe----cCCcccCC
Confidence 3579999999998753 5556776665432110 000011123445543 35677899
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
+.+++||.+.+.|++++.+++.+||.. . ....+ +.++++++..|++.+ .+.+|.+.+++
T Consensus 165 ~~l~sR~~l~~~Ld~~~~~~l~~iL~~----~-------~~~~~--~~~~~~~~~~ia~~~--------~G~~R~a~~ll 223 (334)
T 1in4_A 165 SPLRSRFGIILELDFYTVKELKEIIKR----A-------ASLMD--VEIEDAAAEMIAKRS--------RGTPRIAIRLT 223 (334)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHH----H-------HHHTT--CCBCHHHHHHHHHTS--------TTCHHHHHHHH
T ss_pred HHHHHhcCceeeCCCCCHHHHHHHHHH----H-------HHHcC--CCcCHHHHHHHHHhc--------CCChHHHHHHH
Confidence 999999999999999999999999951 1 12234 468899999998765 56789999999
Q ss_pred HHHHHHhhcccCCCeeEEccccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+++..-...... -.||.+.|++.+..
T Consensus 224 ~~~~~~a~~~~~---~~It~~~v~~al~~ 249 (334)
T 1in4_A 224 KRVRDMLTVVKA---DRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHTC---SSBCHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCcCHHHHHHHHHH
Confidence 887654322211 23777777776654
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-12 Score=154.59 Aligned_cols=154 Identities=19% Similarity=0.196 Sum_probs=92.8
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
.+|+|||||+++.+. +|..||..|+...++...........++|+|++- ......+.++|+.||.+
T Consensus 110 ~~IL~IDEI~r~~~~-------------~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~-lpe~~~~~~aLldRF~~ 175 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPA-------------ILNTLLTAINERQFRNGAHVEKIPMRLLVAASNE-LPEADSSLEALYDRMLI 175 (500)
T ss_dssp CSEEEEESGGGCCHH-------------HHHHHHHHHHSSEEECSSSEEECCCCEEEEEESS-CCCTTCTTHHHHTTCCE
T ss_pred ceeeeHHhHhhhcHH-------------HHHHHHHHHHHHhccCCCCcCCcchhhhhhcccc-CCCccccHHHHHHHHHH
Confidence 579999999987655 7889999998776654222222233344555331 11112366899999999
Q ss_pred eEecCCCCH-HHHHHHHhhhhH--------------hHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh--ccccCCccC
Q psy2392 500 RVELDSLSI-SDFTRIMTSTNV--------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC--INERTENIG 562 (1165)
Q Consensus 500 ~v~~~~L~~-~~l~~Il~~~~~--------------~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~--~~~~~~~~G 562 (1165)
.+.+++++. +++..|+..... .-+..+.+.. -.+.+++++++++++.... -.+....++
T Consensus 176 ~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~----~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS 251 (500)
T 3nbx_X 176 RLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI----GEITLPDHVFELIFMLRQQLDKLPDAPYVS 251 (500)
T ss_dssp EEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH----TTCBCCHHHHHHHHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC----CcccCchHHHHHHHHHHHHhhcCCCCCccc
Confidence 999999997 778888863210 0111122211 2357889999999988742 112234567
Q ss_pred cchhHHHHHHHHHHhhcccCCCeeEEcccccc
Q psy2392 563 ARRLYTAMEKLLEEVSFNSNNISLLVDADYVN 594 (1165)
Q Consensus 563 AR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~ 594 (1165)
.|.+..++...-....++- + -.|+++.|.
T Consensus 252 ~R~~~~llr~A~A~A~l~g--r-~~Vt~eDv~ 280 (500)
T 3nbx_X 252 DRRWKKAIRLLQASAFFSG--R-SAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHHHHTT--C-SBCCGGGGG
T ss_pred hhHHHHHHHHHHHHHhhcC--C-ccccchHHH
Confidence 8888877765433332221 1 235566665
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=157.64 Aligned_cols=178 Identities=28% Similarity=0.468 Sum_probs=121.6
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+|+++++..+.+.+.. ++.......... ..+++++|+||||||||+||+++|..++.+|+.++++++.+. |+|.
T Consensus 31 ~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~-~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~-~~g~ 107 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEF-LKNPSRFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGV 107 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS-CTTH
T ss_pred HHcCCcHHHHHHHHHHHHH-hhchhhhhhccC-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh-hhhh
Confidence 6899999999999887753 222211111111 124679999999999999999999999999999999998765 6654
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
.. ..++.+|..+
T Consensus 108 ~~-~~v~~lfq~a------------------------------------------------------------------- 119 (499)
T 2dhr_A 108 GA-ARVRDLFETA------------------------------------------------------------------- 119 (499)
T ss_dssp HH-HHHHHHTTTS-------------------------------------------------------------------
T ss_pred HH-HHHHHHHHHH-------------------------------------------------------------------
Confidence 31 1233322111
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
. ...++|
T Consensus 120 ----------------------------------~---------------------------------------~~~p~i 126 (499)
T 2dhr_A 120 ----------------------------------K---------------------------------------RHAPCI 126 (499)
T ss_dssp ----------------------------------S---------------------------------------SSSSCE
T ss_pred ----------------------------------H---------------------------------------hcCCCE
Confidence 0 003589
Q ss_pred eeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCe
Q psy2392 1021 IFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 1097 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i 1097 (1165)
+||||||.+....... .+.....+...+.||..++|.. ....+++|++. +.|..+.|.|++ ||..
T Consensus 127 l~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~--------~~~~viviAat----n~p~~LD~aLlr~gRfdr 194 (499)
T 2dhr_A 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPGRFDR 194 (499)
T ss_dssp EEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC--------SSCCCEEEECC----SCGGGSCTTTSSTTSSCC
T ss_pred EEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc--------cCccEEEEEec----CChhhcCcccccccccce
Confidence 9999999998764321 1111122234466777777532 23446666664 467778889986 8999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.+.++.++.++..+||+
T Consensus 195 ~i~i~~Pd~~~R~~IL~ 211 (499)
T 2dhr_A 195 QIAIDAPDVKGREQILR 211 (499)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHH
Confidence 99999999999999987
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-12 Score=142.82 Aligned_cols=141 Identities=18% Similarity=0.258 Sum_probs=82.2
Q ss_pred cceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--
Q psy2392 419 QNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG-- 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~-- 495 (1165)
.++++|+||||.+........ ............++..++|+. ....++++++ ++.|..+.|++++
T Consensus 132 ~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~--------~~~~~i~~a~----t~~p~~ld~~l~r~~ 199 (278)
T 1iy2_A 132 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAA----TNRPDILDPALLRPG 199 (278)
T ss_dssp CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC--------TTCCEEEEEE----ESCTTSSCHHHHSTT
T ss_pred CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC--------CCCCEEEEEe----cCCchhCCHhHcCCC
Confidence 368999999999976543211 111111223345666666532 2334556665 3678889999986
Q ss_pred CCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHH-HHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 496 RFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDG-IQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a-~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
||+..|.|.+++.++..+|+. .. + .+. .+++++ +..|+... +++-+|-|.++++++.
T Consensus 200 rf~~~i~i~~p~~~~r~~il~----~~-------~--~~~--~~~~~~~~~~la~~~-------~G~~~~dl~~l~~~a~ 257 (278)
T 1iy2_A 200 RFDRQIAIDAPDVKGREQILR----IH-------A--RGK--PLAEDVDLALLAKRT-------PGFVGADLENLLNEAA 257 (278)
T ss_dssp SSCCEEECCCCCHHHHHHHHH----HH-------H--TTS--CBCTTCCHHHHHHTC-------TTCCHHHHHHHHHHHH
T ss_pred cCCeEEEeCCcCHHHHHHHHH----HH-------H--ccC--CCCcccCHHHHHHHc-------CCCCHHHHHHHHHHHH
Confidence 999999999999999999984 11 1 122 333333 55555433 2333477888888776
Q ss_pred HHhhcccCCCeeEEcccccccc
Q psy2392 575 EEVSFNSNNISLLVDADYVNSR 596 (1165)
Q Consensus 575 ~~~~~~~~~~~~~i~~~~v~~~ 596 (1165)
.....+. ...|+.+.+++.
T Consensus 258 ~~a~~~~---~~~I~~~dl~~a 276 (278)
T 1iy2_A 258 LLAAREG---RRKITMKDLEEA 276 (278)
T ss_dssp HHHHHTT---CCSBCHHHHHHH
T ss_pred HHHHHhC---CCCcCHHHHHHH
Confidence 5432211 123555555443
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.39 E-value=6.9e-13 Score=151.07 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=81.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.++||||||+|.+.+. .|+.|+.++|... .+..||+++ +.|..+.|.+.+|+.
T Consensus 133 ~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~~----------~~~~~il~~----~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-------------AQSALRRTMETYS----------GVTRFCLIC----NYVTRIIDPLASQCS 185 (353)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHHHSE
T ss_pred CceEEEEECCCccCHH-------------HHHHHHHHHHhcC----------CCceEEEEe----CchhhCcchhhccCc
Confidence 4679999999999765 5668998887521 233445443 356679999999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
.+.|.+++.+++.+++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.++++..
T Consensus 186 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~--------~G~~r~~~~~l~~~~~ 240 (353)
T 1sxj_D 186 -KFRFKALDASNAIDRLR-----------FISEQENV--KCDDGVLERILDIS--------AGDLRRGITLLQSASK 240 (353)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHT--------SSCHHHHHHHHHHTHH
T ss_pred -eEEeCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Confidence 67999999999999884 22334454 68899999999876 4678988888887653
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=147.83 Aligned_cols=130 Identities=22% Similarity=0.316 Sum_probs=88.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeecee--ecCceEEEEEeCCcccC---CCCCCchhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI--IKTDHILFIASGAFHLA---KPSDLIPEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~--~~t~~ilfI~~gaf~~~---~p~~l~pel 493 (1165)
.+|++||||||.+... +|..||.+++...+. +.|. ....++.+|++++.... ....|.+.|
T Consensus 96 ~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L 161 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQ-RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDL 161 (304)
T ss_dssp TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCC-BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEee-ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHH
Confidence 4689999999999754 777899999875542 2221 11235667777643210 112478899
Q ss_pred hCCC-CeeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 494 QGRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 494 ~~R~-~~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
..|| .+.|.++||. .+|+..++. .++.++...+.. -...|++++++.|..+.+ .++.|.|++++
T Consensus 162 ~~Rl~~~~i~lPpL~eR~edi~~l~~----~~l~~~~~~~~~--~~~~~s~~a~~~L~~~~w-------pGnvReL~~~l 228 (304)
T 1ojl_A 162 YYRLNVVAIEMPSLRQRREDIPLLAD----HFLRRFAERNRK--VVKGFTPQAMDLLIHYDW-------PGNIRELENAI 228 (304)
T ss_dssp HHHHSSEEEECCCSGGGGGGHHHHHH----HHHHHHHHHTTC--CCCCBCHHHHHHHHHCCC-------SSHHHHHHHHH
T ss_pred HhhcCeeEEeccCHHHhHhhHHHHHH----HHHHHHHHHhcc--CccCCCHHHHHHHHcCCC-------CCCHHHHHHHH
Confidence 9998 5668899999 688888773 344443332221 235789999999987542 36789999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++++.
T Consensus 229 ~~~~~ 233 (304)
T 1ojl_A 229 ERAVV 233 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=3e-12 Score=143.62 Aligned_cols=123 Identities=21% Similarity=0.298 Sum_probs=88.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|++... .++.|+..+|.. ..++.||+++ +.+..+.|.+.+|+.
T Consensus 107 ~~~viiiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~il~~----~~~~~l~~~l~sr~~ 159 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-------------AQQALRRTMELY----------SNSTRFAFAC----NQSNKIIEPLQSQCA 159 (323)
T ss_dssp CCEEEEEESGGGSCHH-------------HHHTTHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEECcccCCHH-------------HHHHHHHHHhcc----------CCCceEEEEe----CChhhchhHHHhhce
Confidence 3679999999999754 466888888742 2345555553 356678999999987
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+|+.+++.+++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.+++.....
T Consensus 160 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~G~~r~a~~~l~~~~~~~- 216 (323)
T 1sxj_B 160 -ILRYSKLSDEDVLKRLL-----------QIIKLEDV--KYTNDGLEAIIFTA--------EGDMRQAINNLQSTVAGH- 216 (323)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHH-
T ss_pred -EEeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhcC-
Confidence 67999999999999884 11223454 58899999999887 567888888888875321
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
-.|+.+.|.+.++
T Consensus 217 -------~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 217 -------GLVNADNVFKIVD 229 (323)
T ss_dssp -------SSBCHHHHHHHHT
T ss_pred -------CCcCHHHHHHHHC
Confidence 1256666655544
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-13 Score=146.06 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=77.9
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCCC---CCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHLA---KPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~~---~p~dl~pel 1091 (1165)
..|++||||||++... +|..|+.++|...+. +.|.. ...++.+|+++.-... ....|.|.|
T Consensus 100 ~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L 165 (265)
T 2bjv_A 100 DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELE-RVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165 (265)
T ss_dssp TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEEC-CCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCee-cCCCcccccCCeEEEEecCcCHHHHHHcCCccHHH
Confidence 5689999999999764 899999999865432 22211 2235678888653210 012477999
Q ss_pred hccCC-eEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCce--EeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKI--EFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l--~~~~~ai~~ia~~a~~~ 1152 (1165)
..||. +.+.++||.+ +|+..++. ..+.++. ...|..+ .|++++++.|....+..
T Consensus 166 ~~Rl~~~~i~lp~L~~R~~di~~l~~----~~l~~~~---~~~~~~~~~~~~~~a~~~L~~~~~~g 224 (265)
T 2bjv_A 166 LDALAFDVVQLPPLRERESDIMLMAE----YFAIQMC---REIKLPLFPGFTERARETLLNYRWPG 224 (265)
T ss_dssp HHHHCSEEEECCCGGGCHHHHHHHHH----HHHHHHH---HHTTCSSCCCBCHHHHHHHHHSCCTT
T ss_pred HHhhcCcEEeCCChhhhhHHHHHHHH----HHHHHHH---HHhCCCcccCcCHHHHHHHHhCCCCC
Confidence 99995 6789999987 78877766 3344333 3345544 79999999998665543
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.37 E-value=4.7e-13 Score=149.91 Aligned_cols=92 Identities=26% Similarity=0.366 Sum_probs=72.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..+||||||+|.+... .|+.|+.++|.. ..++.||+++ +.+..+.|.|.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~i~~~----~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (319)
T ss_dssp CCEEEEEETGGGSCHH-------------HHHTTGGGTSSS----------SSSEEEEEEE----SCGGGSCHHHHTTCE
T ss_pred CceEEEEeCCCcCCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcchHHHhhCe
Confidence 3579999999999764 788999999862 2345566654 356789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.++|.+++.+++.++|. ..+..+|+ .+++++++.|+..+
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~ 193 (319)
T 2chq_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS 193 (319)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTCC--CBCHHHHHHHHHTT
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 68999999999988887 34556676 68899999998644
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=147.11 Aligned_cols=92 Identities=29% Similarity=0.421 Sum_probs=72.2
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..++|||||+|.+... .|..|+.++|... .++.||+++ +.|..+.|.+.+|+.
T Consensus 110 ~~~vliiDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~i~~~----~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD-------------AQQALRRTMEMFS----------SNVRFILSC----NYSSKIIEPIQSRCA 162 (327)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHHTEE
T ss_pred CCeEEEEeCCCcCCHH-------------HHHHHHHHHHhcC----------CCCeEEEEe----CCccccCHHHHhhCc
Confidence 4679999999999654 7889999998532 344556553 356678999999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.++|.+|+.+++.++|. ..+..+|+ .+++++++.|+..+
T Consensus 163 -~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 201 (327)
T 1iqp_A 163 -IFRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA 201 (327)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--EECHHHHHHHHHHH
T ss_pred -EEEecCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHC
Confidence 57999999999998887 33455676 68999999999876
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=148.52 Aligned_cols=109 Identities=9% Similarity=0.112 Sum_probs=72.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCC-CchhhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSD-LIPELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~d-l~pel~gR~ 1095 (1165)
...||||||||.+. .|+.|+++++ |......++.+|+.++-. ..|.. |.|.+++||
T Consensus 132 ~~~ii~lDE~d~l~---------------~q~~L~~l~~-------~~~~~~s~~~vI~i~n~~-d~~~~~L~~~v~SR~ 188 (318)
T 3te6_A 132 RKTLILIQNPENLL---------------SEKILQYFEK-------WISSKNSKLSIICVGGHN-VTIREQINIMPSLKA 188 (318)
T ss_dssp CEEEEEEECCSSSC---------------CTHHHHHHHH-------HHHCSSCCEEEEEECCSS-CCCHHHHHTCHHHHT
T ss_pred CceEEEEecHHHhh---------------cchHHHHHHh-------cccccCCcEEEEEEecCc-ccchhhcchhhhccC
Confidence 35699999999997 1556777765 122345678899988732 23332 456778999
Q ss_pred C-eEEEcCCCCHHHHHHHHhhhHHHhHHHHHH-HH-------------------------hhcCCceEeCHHHHHHHHHH
Q psy2392 1096 P-IRVELDSLSISDFTRIMTSTNVCLTKQYEA-LL-------------------------ATEGIKIEFVDDGIQRLAEI 1148 (1165)
Q Consensus 1096 ~-i~v~l~~l~~~~l~~il~~~~~~l~~q~~~-l~-------------------------~~egv~l~~~~~ai~~ia~~ 1148 (1165)
. -++.|+|++.+++.+||+ + -+..... .+ ....+++.++++||+.+|+.
T Consensus 189 ~~~~i~F~pYt~~el~~Il~---~-Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~ 264 (318)
T 3te6_A 189 HFTEIKLNKVDKNELQQMII---T-RLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKN 264 (318)
T ss_dssp TEEEEECCCCCHHHHHHHHH---H-HHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHHH---H-HHHhhhccccccccccccccccccccccccccccccccccccccCHHHHHHHHHH
Confidence 5 578999999999999999 2 2222110 00 00013457899999999997
Q ss_pred Hhcc
Q psy2392 1149 AYCI 1152 (1165)
Q Consensus 1149 a~~~ 1152 (1165)
++..
T Consensus 265 vA~~ 268 (318)
T 3te6_A 265 VANV 268 (318)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6553
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.6e-12 Score=143.27 Aligned_cols=116 Identities=19% Similarity=0.189 Sum_probs=79.2
Q ss_pred eEEEEecchhhhccCCCCCCCccchhhh-hhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 421 GIIFLDEIDKITTRSSQNNNTDISRAGV-QRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 421 ~IifiDEidki~~~~~~~~~~~~~~~~v-q~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
.||||||+|.+...... .+ ...|+... .++.||++++-. .-+..+.|.+.+||..
T Consensus 135 ~vlilDEi~~l~~~~~~---------~~~l~~l~~~~--------------~~~~iI~~t~~~-~~~~~l~~~l~sr~~~ 190 (384)
T 2qby_B 135 AIIYLDEVDTLVKRRGG---------DIVLYQLLRSD--------------ANISVIMISNDI-NVRDYMEPRVLSSLGP 190 (384)
T ss_dssp EEEEEETTHHHHHSTTS---------HHHHHHHHTSS--------------SCEEEEEECSST-TTTTTSCHHHHHTCCC
T ss_pred CEEEEECHHHhccCCCC---------ceeHHHHhcCC--------------cceEEEEEECCC-chHhhhCHHHHhcCCC
Confidence 39999999999865311 12 33343322 456777775421 1125688999999977
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
.+.|++|+.+++.+|+.. . +....-...+++++++.+++.+.. ..+.+|.+.++++.+..-
T Consensus 191 ~i~l~~l~~~~~~~il~~----~-------~~~~~~~~~~~~~~~~~i~~~~~~-----~~G~~r~a~~~l~~a~~~ 251 (384)
T 2qby_B 191 SVIFKPYDAEQLKFILSK----Y-------AEYGLIKGTYDDEILSYIAAISAK-----EHGDARKAVNLLFRAAQL 251 (384)
T ss_dssp EEEECCCCHHHHHHHHHH----H-------HHHTSCTTSCCSHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHHH
T ss_pred eEEECCCCHHHHHHHHHH----H-------HHhhcccCCcCHHHHHHHHHHHHh-----ccCCHHHHHHHHHHHHHH
Confidence 999999999999999951 1 111001236889999999998853 246789999999887654
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-12 Score=147.73 Aligned_cols=144 Identities=15% Similarity=0.064 Sum_probs=88.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.+..... ...+...|+..++.... ..++.+|+++.-. .-+..+.|.+.+||.
T Consensus 130 ~~~vlilDEi~~l~~~~~--------~~~~l~~l~~~~~~~~~--------~~~~~~I~~t~~~-~~~~~l~~~l~~r~~ 192 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPG--------GQDLLYRITRINQELGD--------RVWVSLVGITNSL-GFVENLEPRVKSSLG 192 (387)
T ss_dssp SEEEEEEETTTHHHHSTT--------HHHHHHHHHHGGGCC-------------CEEEEECSCS-TTSSSSCHHHHTTTT
T ss_pred CeEEEEEccHhhhcccCC--------CChHHHhHhhchhhcCC--------CceEEEEEEECCC-chHhhhCHHHHhcCC
Confidence 356999999999976520 00122233333332110 3456677775421 112568899999997
Q ss_pred e-eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 ~-~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
. .+.|++|+.+++.+|+.. .+ ........+++++++.+++.+.. ..+.+|.+.++++.+....
T Consensus 193 ~~~i~l~~l~~~~~~~il~~----~~-------~~~~~~~~~~~~~~~~l~~~~~~-----~~G~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 193 EVELVFPPYTAPQLRDILET----RA-------EEAFNPGVLDPDVVPLCAALAAR-----EHGDARRALDLLRVAGEIA 256 (387)
T ss_dssp SEECCBCCCCHHHHHHHHHH----HH-------HHHBCTTTBCSSHHHHHHHHHHS-----SSCCHHHHHHHHHHHHHHH
T ss_pred CeEEeeCCCCHHHHHHHHHH----HH-------HhhccCCCCCHHHHHHHHHHHHH-----hccCHHHHHHHHHHHHHHH
Confidence 6 889999999999999941 11 11011236789999999998854 2477999999999887543
Q ss_pred hcccCCCeeEEcccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
..+. .-.|+.+.|++.+.
T Consensus 257 ~~~~---~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 257 ERRR---EERVRREHVYSARA 274 (387)
T ss_dssp HHTT---CSCBCHHHHHHHHH
T ss_pred HHcC---CCCcCHHHHHHHHH
Confidence 2211 12366666665544
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=141.59 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=89.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.+.+. .++.|+..+|.. ..++.||+++ +++..+.|.+.+|+
T Consensus 119 ~~~vliiDe~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sr~- 170 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTILSRC- 170 (373)
T ss_dssp SSEEEEEECGGGSCHH-------------HHHHHHHHHHSC----------CSSEEEEEEE----SCGGGSCHHHHTTS-
T ss_pred CeEEEEEECcchhcHH-------------HHHHHHHHHhcC----------CCceEEEEEe----CChHhCcHHHHhhe-
Confidence 4679999999999654 566899988752 3456666664 35667889999998
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..+.|.+|+.+++.+++. ..+..+|+ .+++++++.|++.+ ++..|.+.+.+++++...
T Consensus 171 ~~i~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~a~~~l~~~~--------~G~~r~~~~~l~~~~~~~- 228 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA--------EGSLRDALSLTDQAIASG- 228 (373)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHS--------SSCHHHHHHHHHHHHHHT-
T ss_pred eEeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHC--------CCCHHHHHHHHHHHHHhc-
Confidence 568999999999999884 12333454 67899999998876 567899999998875321
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
. . .||.+.|++.++
T Consensus 229 ---~-~--~i~~~~v~~~~~ 242 (373)
T 1jr3_A 229 ---D-G--QVSTQAVSAMLG 242 (373)
T ss_dssp ---T-T--CBCHHHHHHHTT
T ss_pred ---C-C--cccHHHHHHHhC
Confidence 1 1 266666655443
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-13 Score=151.99 Aligned_cols=93 Identities=20% Similarity=0.254 Sum_probs=72.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..+||||||+|.+... .|..|+.++|... .+..||+++ +.|..+.|.|.+|+.
T Consensus 133 ~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~~----------~~~~~il~~----~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 133 PYKIIILDEADSMTAD-------------AQSALRRTMETYS----------GVTRFCLIC----NYVTRIIDPLASQCS 185 (353)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHHHSE
T ss_pred CceEEEEECCCccCHH-------------HHHHHHHHHHhcC----------CCceEEEEe----CchhhCcchhhccCc
Confidence 3469999999999765 7889999998532 233445443 467789999999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.+.|.+++.+++.++|. ..+..+|+ .+++++++.|++.+.
T Consensus 186 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 186 -KFRFKALDASNAIDRLR-----------FISEQENV--KCDDGVLERILDISA 225 (353)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHTS
T ss_pred -eEEeCCCCHHHHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcC
Confidence 67999999999998888 33445666 688999999998764
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.3e-12 Score=131.42 Aligned_cols=92 Identities=26% Similarity=0.366 Sum_probs=69.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..++|||||+|.+... .|..|+.+++.. ..+..||+++ +.+..+.|.|.+|+.
T Consensus 102 ~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~~----~~~~~~~~~l~~r~~ 154 (226)
T 2chg_A 102 PFKIIFLDEADALTAD-------------AQAALRRTMEMY----------SKSCRFILSC----NYVSRIIEPIQSRCA 154 (226)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CceEEEEeChhhcCHH-------------HHHHHHHHHHhc----------CCCCeEEEEe----CChhhcCHHHHHhCc
Confidence 4679999999998654 677888888752 2344555554 355678899999998
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.++|.+|+.+++.+++. ..+..+|+ .+++++++.|++.+
T Consensus 155 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 193 (226)
T 2chg_A 155 -VFRFKPVPKEAMKKRLL-----------EICEKEGV--KITEDGLEALIYIS 193 (226)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH
T ss_pred -eeecCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 68999999999998888 23334465 58899999998755
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-12 Score=148.39 Aligned_cols=116 Identities=21% Similarity=0.275 Sum_probs=80.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCCC---CCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHLA---KPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~~---~p~dl~pel 1091 (1165)
..|++||||||.+... +|..||.++|...+. +.|.. ...++.+|+++.-... ....|.+.|
T Consensus 96 ~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L 161 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQ-RVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDL 161 (304)
T ss_dssp TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCC-BTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEee-ecCCcccccCCeEEEEecCccHHHHHHhCCcHHHH
Confidence 5799999999999765 899999999876542 33322 1235678888763210 113477889
Q ss_pred hccC-CeEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|| .+.+.++||. .+|+..++. ..+.++..-++... ..|++++++.|...++..
T Consensus 162 ~~Rl~~~~i~lPpL~eR~edi~~l~~----~~l~~~~~~~~~~~--~~~s~~a~~~L~~~~wpG 219 (304)
T 1ojl_A 162 YYRLNVVAIEMPSLRQRREDIPLLAD----HFLRRFAERNRKVV--KGFTPQAMDLLIHYDWPG 219 (304)
T ss_dssp HHHHSSEEEECCCSGGGGGGHHHHHH----HHHHHHHHHTTCCC--CCBCHHHHHHHHHCCCSS
T ss_pred HhhcCeeEEeccCHHHhHhhHHHHHH----HHHHHHHHHhccCc--cCCCHHHHHHHHcCCCCC
Confidence 9998 6668999999 688887777 45555544333222 478999999998766544
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=130.33 Aligned_cols=124 Identities=19% Similarity=0.338 Sum_probs=87.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.+|||||+|.+.+. .++.|+..++.. ..++.+|+++ +.+..+.+.+.+|+
T Consensus 126 ~~~vlviDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~t----~~~~~~~~~l~~r~- 177 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTILSRC- 177 (250)
T ss_dssp SSEEEEEETGGGSCHH-------------HHHHHHHHHHSC----------CTTEEEEEEE----SCGGGSCHHHHTTS-
T ss_pred CceEEEEECcccccHH-------------HHHHHHHHHhcC----------CCceEEEEEe----CChHhCCHHHHHHh-
Confidence 4679999999998644 556788888742 2345566654 34567889999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
..+.|++|+.+++.+++. ..+...++ .+++++++.|++.+ .+..|.+.+++++++..
T Consensus 178 ~~i~l~~l~~~e~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~G~~~~~~~~~~~~~~~-- 234 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA--------EGSLRDALSLTDQAIAS-- 234 (250)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHTT--
T ss_pred hhccCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhc--
Confidence 568999999999999884 12233444 67899999999887 45688888888887532
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
... .||.+.|++.++
T Consensus 235 --~~~---~i~~~~v~~~~~ 249 (250)
T 1njg_A 235 --GDG---QVSTQAVSAMLG 249 (250)
T ss_dssp --TTS---SBCHHHHHHHSC
T ss_pred --cCc---eecHHHHHHHhC
Confidence 111 477777766543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-12 Score=144.33 Aligned_cols=105 Identities=23% Similarity=0.340 Sum_probs=78.8
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCCe
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 499 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~~ 499 (1165)
+.|++|||+|.++.. .|+.|+..+|.. ..+..||.++ +.+..+.|.+++|+.
T Consensus 111 ~~viiiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~il~~----n~~~~i~~~i~sR~~- 162 (340)
T 1sxj_C 111 FKLIILDEADAMTNA-------------AQNALRRVIERY----------TKNTRFCVLA----NYAHKLTPALLSQCT- 162 (340)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE-
T ss_pred ceEEEEeCCCCCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEe----cCccccchhHHhhce-
Confidence 679999999999754 577899999852 2344455543 456779999999997
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
++.|.+++.+++.+++. ..+..+++ .+++++++.+++.+ ++..|++.+.++.+
T Consensus 163 ~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~i~~~~~~~i~~~s--------~G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIA-----------NVLVHEKL--KLSPNAEKALIELS--------NGDMRRVLNVLQSC 215 (340)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHTTTC--CBCHHHHHHHHHHH--------TTCHHHHHHHTTTT
T ss_pred eEeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHH
Confidence 57999999999988873 23344555 57899999999887 56778777777554
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=144.68 Aligned_cols=91 Identities=22% Similarity=0.348 Sum_probs=70.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..+|||||+|++... .|+.|++++|.. ..++.||+++ +.+..+.|.+.+|+.
T Consensus 108 ~~viiiDe~~~l~~~-------------~~~~L~~~le~~----------~~~~~~il~~----~~~~~l~~~l~sr~~- 159 (323)
T 1sxj_B 108 HKIVILDEADSMTAG-------------AQQALRRTMELY----------SNSTRFAFAC----NQSNKIIEPLQSQCA- 159 (323)
T ss_dssp CEEEEEESGGGSCHH-------------HHHTTHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE-
T ss_pred ceEEEEECcccCCHH-------------HHHHHHHHHhcc----------CCCceEEEEe----CChhhchhHHHhhce-
Confidence 569999999999764 688899999852 2344555554 356788999999998
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+++|.+++.+++.++|. ..++.+|+ .+++++++.|++.+
T Consensus 160 ~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 198 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLL-----------QIIKLEDV--KYTNDGLEAIIFTA 198 (323)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH
T ss_pred EEeecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 57999999999999988 22334566 57899999998876
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=146.74 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=72.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++|||+|.+... .|+.|++++|... .+..||++. +.|..+.|.+++||.
T Consensus 111 ~~viiiDe~~~l~~~-------------~~~~L~~~le~~~----------~~~~~il~~----n~~~~i~~~i~sR~~- 162 (340)
T 1sxj_C 111 FKLIILDEADAMTNA-------------AQNALRRVIERYT----------KNTRFCVLA----NYAHKLTPALLSQCT- 162 (340)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHTTSE-
T ss_pred ceEEEEeCCCCCCHH-------------HHHHHHHHHhcCC----------CCeEEEEEe----cCccccchhHHhhce-
Confidence 469999999999754 7889999998532 233455443 456789999999998
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|.+++.+++.++|. ..++.+|+ .+++++++.|+..+-
T Consensus 163 ~~~~~~l~~~~~~~~l~-----------~~~~~~~~--~i~~~~~~~i~~~s~ 202 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIA-----------NVLVHEKL--KLSPNAEKALIELSN 202 (340)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHTTTC--CBCHHHHHHHHHHHT
T ss_pred eEeccCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHcC
Confidence 57999999999988887 44555676 678999999998874
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-12 Score=142.12 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=82.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.|++|||+|.+.+. .|+.|+..+|.. ..+..||.++ ..|..+.|.+++|+
T Consensus 134 ~~~vlilDE~~~L~~~-------------~~~~L~~~le~~----------~~~~~~Il~t----~~~~~l~~~l~sR~- 185 (354)
T 1sxj_E 134 RYKCVIINEANSLTKD-------------AQAALRRTMEKY----------SKNIRLIMVC----DSMSPIIAPIKSQC- 185 (354)
T ss_dssp CCEEEEEECTTSSCHH-------------HHHHHHHHHHHS----------TTTEEEEEEE----SCSCSSCHHHHTTS-
T ss_pred CCeEEEEeCccccCHH-------------HHHHHHHHHHhh----------cCCCEEEEEe----CCHHHHHHHHHhhc-
Confidence 5779999999997543 566888888742 1234455543 46777999999999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeC-HHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV-DDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~-~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
.++.|++++.+++.++|. ..+..+|+ .++ +++++.|++.+ +++.|.+.+.++++..
T Consensus 186 ~~~~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~l~~i~~~~--------~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILS-----------DVVTNERI--QLETKDILKRIAQAS--------NGNLRVSLLMLESMAL 242 (354)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHHTC--EECCSHHHHHHHHHH--------TTCHHHHHHHHTHHHH
T ss_pred eEEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCcHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Confidence 678999999999999884 22334465 688 99999999877 5789999999988753
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.30 E-value=8.8e-12 Score=133.31 Aligned_cols=135 Identities=15% Similarity=0.225 Sum_probs=86.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+++|||||+|.+.... ..|..|+.+++... ....+.+|+++......-..+.+.|.+||.
T Consensus 104 ~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~--------~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~ 164 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVA--------EQKRGSLIVSASASPMEAGFVLPDLVSRMH 164 (242)
T ss_dssp GSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHH--------HHCSCEEEEEESSCTTTTTCCCHHHHHHHH
T ss_pred CCCEEEEeccccccCCH-----------HHHHHHHHHHHHHH--------HcCCCeEEEEcCCCHHHHHHhhhhhhhHhh
Confidence 46799999999986542 13556777765311 111221333332211111245699999996
Q ss_pred --eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 499 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 499 --~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
..+.|.+++.+++.+++. ..+...|+ .+++++++.|++.+ .+..|.+.++++++...
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQ-----------RRAAMRGL--QLPEDVGRFLLNRM--------ARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHHT--------TTCHHHHHHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------cCCHHHHHHHHHHHHHH
Confidence 788999999999999984 12233454 68899999999865 46789999999988754
Q ss_pred hhcccCCCeeEEccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
...+ + -.||.+.|++.+
T Consensus 224 a~~~--~--~~It~~~v~~~l 240 (242)
T 3bos_A 224 SMVH--Q--RKLTIPFVKEML 240 (242)
T ss_dssp HHHH--T--CCCCHHHHHHHH
T ss_pred HHHh--C--CCCcHHHHHHHh
Confidence 3211 1 237777666544
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.3e-12 Score=136.87 Aligned_cols=85 Identities=25% Similarity=0.409 Sum_probs=56.0
Q ss_pred CCeeeehhhhhhhccCCCCC-CCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--c
Q psy2392 1018 NGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--R 1094 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~-~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R 1094 (1165)
+.++|+||||.+........ +...........++..++|.. ....++++++. ++|..+.|.+++ |
T Consensus 109 ~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~--------~~~~~i~~a~t----~~p~~ld~~l~r~~r 176 (254)
T 1ixz_A 109 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPGR 176 (254)
T ss_dssp SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC--------TTCCEEEEEEE----SCGGGSCGGGGSTTS
T ss_pred CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC--------CCCCEEEEEcc----CCchhCCHHHcCCCc
Confidence 57999999999986643211 111112234556676666532 22334555553 578888999987 8
Q ss_pred CCeEEEcCCCCHHHHHHHHh
Q psy2392 1095 FPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|+..++++.++.++..+||+
T Consensus 177 f~~~i~i~~p~~~~r~~il~ 196 (254)
T 1ixz_A 177 FDRQIAIDAPDVKGREQILR 196 (254)
T ss_dssp SCEEEECCSCCHHHHHHHHH
T ss_pred CCeEEeeCCcCHHHHHHHHH
Confidence 99999999999999999987
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=142.35 Aligned_cols=91 Identities=21% Similarity=0.369 Sum_probs=71.1
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||||||+|.+... .|+.|+.++|.. ..++.||+++. ++..+.|.+.+|+ .
T Consensus 120 ~~vliiDe~~~l~~~-------------~~~~Ll~~le~~----------~~~~~~Il~~~----~~~~l~~~l~sr~-~ 171 (373)
T 1jr3_A 120 FKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLATT----DPQKLPVTILSRC-L 171 (373)
T ss_dssp SEEEEEECGGGSCHH-------------HHHHHHHHHHSC----------CSSEEEEEEES----CGGGSCHHHHTTS-E
T ss_pred eEEEEEECcchhcHH-------------HHHHHHHHHhcC----------CCceEEEEEeC----ChHhCcHHHHhhe-e
Confidence 469999999999654 688999999852 34556666643 5667899999998 5
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+++|++++.+++.++|. ..++.+|+ .+++++++.|++.+
T Consensus 172 ~i~~~~l~~~~~~~~l~-----------~~~~~~~~--~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 172 QFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA 210 (373)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHS
T ss_pred EeeCCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHC
Confidence 68999999999999888 33444566 67899999998765
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=2e-11 Score=147.58 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=54.9
Q ss_pred ccEecchhhHHHHHHHHHhhhhh---hcccCCCC-CccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRR---QQITGPLQ-QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 256 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r---~~l~~~~~-~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~ 256 (1165)
++++|++.+++.+..++... .. .++..... ....+.++||+||||||||++|+++|+.++.+++.+++++...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~-~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANW-ENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 115 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTH-HHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHh-HhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcch
Confidence 37999999999999988642 11 12211111 1112479999999999999999999999999999999988643
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.4e-12 Score=150.29 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=74.8
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+|+|||||+++... +|..||.+||...+.. .| .......++|++.. .......+.++|..||.
T Consensus 110 ~~IL~IDEI~r~~~~-------------~q~~LL~~lee~~v~i-~G~~~~~~~~~iI~ATN-~lpe~~~~~~aLldRF~ 174 (500)
T 3nbx_X 110 AEIVFLDEIWKAGPA-------------ILNTLLTAINERQFRN-GAHVEKIPMRLLVAASN-ELPEADSSLEALYDRML 174 (500)
T ss_dssp CSEEEEESGGGCCHH-------------HHHHHHHHHHSSEEEC-SSSEEECCCCEEEEEES-SCCCTTCTTHHHHTTCC
T ss_pred ceeeeHHhHhhhcHH-------------HHHHHHHHHHHHhccC-CCCcCCcchhhhhhccc-cCCCccccHHHHHHHHH
Confidence 579999999987654 8999999998776654 22 12222333455543 11112236689999999
Q ss_pred eEEEcCCCCH-HHHHHHHhhhHH--------------HhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSI-SDFTRIMTSTNV--------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~-~~l~~il~~~~~--------------~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+++.+++++. ++...||+.-.. .-+.+++... .+ +.++++++++|+.+..
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~--~~--v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI--GE--ITLPDHVFELIFMLRQ 239 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH--TT--CBCCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC--Cc--ccCchHHHHHHHHHHH
Confidence 9999999987 778888874210 1122222222 23 4788999999998874
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-12 Score=129.35 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=50.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCccc-CCCCCCchhhhCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~-~~p~~l~pel~~R~ 497 (1165)
.+.||||||+|.+....... ....+++.|.++++. .++.+|++++... ..-..+.|.|.+||
T Consensus 115 ~~~vl~iDe~~~l~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~ 177 (195)
T 1jbk_A 115 GNVILFIDELHTMVGAGKAD-----GAMDAGNMLKPALAR------------GELHCVGATTLDEYRQYIEKDAALERRF 177 (195)
T ss_dssp TTEEEEEETGGGGTT-----------CCCCHHHHHHHHHT------------TSCCEEEEECHHHHHHHTTTCHHHHTTE
T ss_pred CCeEEEEeCHHHHhccCccc-----chHHHHHHHHHhhcc------------CCeEEEEeCCHHHHHHHHhcCHHHHHHh
Confidence 46699999999998653210 112255566666653 2445666653211 00125789999999
Q ss_pred CeeEecCCCCHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIM 515 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il 515 (1165)
. .+.|.+++.+++.+||
T Consensus 178 ~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 178 Q-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp E-EEECCCCCHHHHHTTC
T ss_pred c-eeecCCCCHHHHHHHh
Confidence 8 4799999999988876
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-12 Score=156.15 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=62.7
Q ss_pred HHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhh--hcccCCCCC-CCCCceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 765 IIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRR--QQITGPLQQ-EITPKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 765 i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r--~~l~~~~~~-~~~~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.|-++.+|..+ ++++|++.+++.+..++...... .++...... ...+.++||+||||||||++|+++|+.++
T Consensus 28 lW~ekyrP~~~-----~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 28 LWTVKYAPTNL-----QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CHHHHTCCSSG-----GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcccccCCCCH-----HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 34567777665 78999999999999998752111 122211111 11247999999999999999999999999
Q ss_pred CCeEEEecCCccc
Q psy2392 842 APFIKIEATKFTE 854 (1165)
Q Consensus 842 ~~fi~l~~se~~~ 854 (1165)
.+++.++++++..
T Consensus 103 ~~~i~in~s~~~~ 115 (516)
T 1sxj_A 103 YDILEQNASDVRS 115 (516)
T ss_dssp CEEEEECTTSCCC
T ss_pred CCEEEEeCCCcch
Confidence 9999999988654
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=139.90 Aligned_cols=112 Identities=17% Similarity=0.256 Sum_probs=76.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC---CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~---~l~pel~~ 495 (1165)
..+++||||||.+.... ..|..|+.+++.. ......+++++ . ..|. .+.|.|.+
T Consensus 98 ~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~--------~~~~~~iii~~-~---~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTL--------YLLEKQIILAS-D---RHPQKLDGVSDRLVS 154 (324)
T ss_dssp TCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHH--------HHTTCEEEEEE-S---SCGGGCTTSCHHHHH
T ss_pred CCCEEEEcCcccccCCh-----------HHHHHHHHHHHHH--------HHCCCeEEEEe-c---CChHHHHHhhhHhhh
Confidence 36899999999987431 2455676665421 11122334444 2 2233 58899999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..+.|++ +.+++.+|+. . .+...++ .+++++++.|++.+ +++|.|.++++++
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~----~-------~~~~~~~--~l~~~~l~~l~~~~---------g~~r~l~~~l~~~ 211 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIK----E-------KLKEFNL--ELRKEVIDYLLENT---------KNVREIEGKIKLI 211 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHH----H-------HHHHTTC--CCCHHHHHHHHHHC---------SSHHHHHHHHHHH
T ss_pred cccCceEEEeCC-CHHHHHHHHH----H-------HHHhcCC--CCCHHHHHHHHHhC---------CCHHHHHHHHHHH
Confidence 996 7789999 9999999984 1 1223444 78899999998755 3579999999988
Q ss_pred HHH
Q psy2392 574 LEE 576 (1165)
Q Consensus 574 l~~ 576 (1165)
+..
T Consensus 212 ~~~ 214 (324)
T 1l8q_A 212 KLK 214 (324)
T ss_dssp HHH
T ss_pred HHc
Confidence 754
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=137.24 Aligned_cols=103 Identities=20% Similarity=0.361 Sum_probs=71.0
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee--------eeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT--------KYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~--------k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
...|+||||+|.+... +|..|++.+|...+.. +.....-.++.+|++ .++|..|.
T Consensus 102 ~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~a----t~~~~~Ls 164 (334)
T 1in4_A 102 RGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGA----TTRSGLLS 164 (334)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CCCEEEEE----ESCGGGSC
T ss_pred CCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEe----cCCcccCC
Confidence 3569999999998753 6778888777542210 000011123445543 35678899
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+.+++||.+.+.|++++.+++.+||+. ..+..|+ .++++++..||..+
T Consensus 165 ~~l~sR~~l~~~Ld~~~~~~l~~iL~~-----------~~~~~~~--~~~~~~~~~ia~~~ 212 (334)
T 1in4_A 165 SPLRSRFGIILELDFYTVKELKEIIKR-----------AASLMDV--EIEDAAAEMIAKRS 212 (334)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHH-----------HHHHTTC--CBCHHHHHHHHHTS
T ss_pred HHHHHhcCceeeCCCCCHHHHHHHHHH-----------HHHHcCC--CcCHHHHHHHHHhc
Confidence 999999999999999999999999981 1223354 68899999998765
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=137.87 Aligned_cols=96 Identities=18% Similarity=0.195 Sum_probs=65.3
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhh-hhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGV-QRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gv-q~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
||||||+|.+...... .+ +..|+... .++.||+++.-. .-+..+.|.+.+||...
T Consensus 136 vlilDEi~~l~~~~~~---------~~~l~~l~~~~--------------~~~~iI~~t~~~-~~~~~l~~~l~sr~~~~ 191 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGG---------DIVLYQLLRSD--------------ANISVIMISNDI-NVRDYMEPRVLSSLGPS 191 (384)
T ss_dssp EEEEETTHHHHHSTTS---------HHHHHHHHTSS--------------SCEEEEEECSST-TTTTTSCHHHHHTCCCE
T ss_pred EEEEECHHHhccCCCC---------ceeHHHHhcCC--------------cceEEEEEECCC-chHhhhCHHHHhcCCCe
Confidence 9999999999865210 12 33333322 467788876521 11256889999998779
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.|+||+.+++.+||. ..+.+ .-.+ ..+++++++.|++.+.
T Consensus 192 i~l~~l~~~~~~~il~----~~~~~-----~~~~--~~~~~~~~~~i~~~~~ 232 (384)
T 2qby_B 192 VIFKPYDAEQLKFILS----KYAEY-----GLIK--GTYDDEILSYIAAISA 232 (384)
T ss_dssp EEECCCCHHHHHHHHH----HHHHH-----TSCT--TSCCSHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHH----HHHHh-----hccc--CCcCHHHHHHHHHHHH
Confidence 9999999999999998 11110 0112 3688999999998876
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=140.19 Aligned_cols=92 Identities=18% Similarity=0.304 Sum_probs=71.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
++.|++|||+|.+... .|+.|+.++|... .+..||.++ .+|..+.|.+++||
T Consensus 134 ~~~vlilDE~~~L~~~-------------~~~~L~~~le~~~----------~~~~~Il~t----~~~~~l~~~l~sR~- 185 (354)
T 1sxj_E 134 RYKCVIINEANSLTKD-------------AQAALRRTMEKYS----------KNIRLIMVC----DSMSPIIAPIKSQC- 185 (354)
T ss_dssp CCEEEEEECTTSSCHH-------------HHHHHHHHHHHST----------TTEEEEEEE----SCSCSSCHHHHTTS-
T ss_pred CCeEEEEeCccccCHH-------------HHHHHHHHHHhhc----------CCCEEEEEe----CCHHHHHHHHHhhc-
Confidence 4569999999996543 6889999998521 234455554 36778999999999
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeC-HHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFV-DDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~-~~ai~~ia~~a 1149 (1165)
.++.|++++.+++.++|. ..++.+|+ .++ +++++.|++.+
T Consensus 186 ~~~~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~l~~i~~~~ 226 (354)
T 1sxj_E 186 LLIRCPAPSDSEISTILS-----------DVVTNERI--QLETKDILKRIAQAS 226 (354)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHHTC--EECCSHHHHHHHHHH
T ss_pred eEEecCCcCHHHHHHHHH-----------HHHHHcCC--CCCcHHHHHHHHHHc
Confidence 678999999999999988 33445676 788 99999999876
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.3e-12 Score=158.25 Aligned_cols=162 Identities=17% Similarity=0.191 Sum_probs=94.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeee-eceee--cCceEEEEEeCCcccCC--C-------
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGII--KTDHILFIASGAFHLAK--P------- 486 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~-~~~~~--~t~~ilfI~~gaf~~~~--p------- 486 (1165)
.+||+||||||++.+. +|..|+..||.+.++. +.|.. ...++.+|||.+-.... +
T Consensus 391 ~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~n 457 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN 457 (595)
T ss_dssp SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTT
T ss_pred CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhc
Confidence 5799999999999765 7779999999877653 22211 12456677775422100 0
Q ss_pred CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhH-------------hHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHh
Q psy2392 487 SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNV-------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 553 (1165)
Q Consensus 487 ~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~-------------~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~ 553 (1165)
-.+.|+|++||++++.+.++..++...|+..... ..++++..... ..+.-.+++++.+.|.+....
T Consensus 458 i~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar-~~~~p~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 458 INLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR-KYVTPKITSEAKNLITDFFVE 536 (595)
T ss_dssp TCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH-HHHCCCCCCCTHHHHHHHHTT
T ss_pred cCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHH
Confidence 1789999999997667766666554444431100 11222222211 122336788899999887654
Q ss_pred cccc-------CCccCcchhHHHHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 554 INER-------TENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 554 ~~~~-------~~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
+-.. .-.+.+|.|.+++...-.-+..+.. -.|+.+.|++++
T Consensus 537 lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~---~~V~~~dv~~Ai 584 (595)
T 3f9v_A 537 MRKKSSETPDSPILITPRQLEALIRISEAYAKMALK---AEVTREDAERAI 584 (595)
T ss_dssp SSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS---CCSSHHHHHHHH
T ss_pred HHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCc---CCCCHHHHHHHH
Confidence 2111 1356789999988765433322211 235666665543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=145.59 Aligned_cols=135 Identities=22% Similarity=0.270 Sum_probs=93.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC---CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~---~l~pel~~ 495 (1165)
...|+||||||.+... +..|..|+.+++... .....++|++. ..|. .+.+.|.+
T Consensus 194 ~~~vL~IDEi~~l~~~-----------~~~q~~l~~~l~~l~--------~~~~~iIitt~----~~~~~l~~l~~~L~s 250 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGK-----------TGVQTELFHTFNELH--------DSGKQIVICSD----REPQKLSEFQDRLVS 250 (440)
T ss_dssp TCSEEEEECGGGGSSC-----------HHHHHHHHHHHHHHH--------TTTCEEEEEES----SCGGGCSSCCHHHHH
T ss_pred CCCEEEEeCcccccCC-----------hHHHHHHHHHHHHHH--------HCCCeEEEEEC----CCHHHHHHHHHHHHh
Confidence 4679999999999753 125667777765311 11223344431 1222 38899999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..+.|.+++.+++.+||. . .+...|+ .+++++++.|+..+ .+.+|.|.++++++
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~----~-------~~~~~~~--~i~~e~l~~la~~~--------~gn~R~l~~~L~~~ 309 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIAR----K-------MLEIEHG--ELPEEVLNFVAENV--------DDNLRRLRGAIIKL 309 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHH----H-------HHHHHTC--CCCTTHHHHHHHHC--------CSCHHHHHHHHHHH
T ss_pred hccCCeEEEeCCCCHHHHHHHHH----H-------HHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHH
Confidence 996 778999999999999984 1 1222344 67899999998755 57899999999998
Q ss_pred HHHhhcccCCCeeEEcccccccccccCc
Q psy2392 574 LEEVSFNSNNISLLVDADYVNSRLGDLS 601 (1165)
Q Consensus 574 l~~~~~~~~~~~~~i~~~~v~~~~~~~~ 601 (1165)
....... + ..||.+.+++.+++..
T Consensus 310 ~~~a~~~--~--~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 310 LVYKETT--G--KEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHS--S--SCCCHHHHHHHTSTTT
T ss_pred HHHHHHh--C--CCCCHHHHHHHHHHHh
Confidence 7654432 1 2488888888887765
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=8.3e-11 Score=124.66 Aligned_cols=92 Identities=21% Similarity=0.370 Sum_probs=69.4
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
.+.+|||||+|.+... .++.|+.+++.. ..++.+|+++. .+..+.+.+.+|+
T Consensus 126 ~~~vlviDe~~~l~~~-------------~~~~l~~~l~~~----------~~~~~~i~~t~----~~~~~~~~l~~r~- 177 (250)
T 1njg_A 126 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLATT----DPQKLPVTILSRC- 177 (250)
T ss_dssp SSEEEEEETGGGSCHH-------------HHHHHHHHHHSC----------CTTEEEEEEES----CGGGSCHHHHTTS-
T ss_pred CceEEEEECcccccHH-------------HHHHHHHHHhcC----------CCceEEEEEeC----ChHhCCHHHHHHh-
Confidence 3579999999998543 678899888752 23455666543 4567889999996
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
..++|++|+.+++.+++. ..+..+|+ .+++++++.|++.+
T Consensus 178 ~~i~l~~l~~~e~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 178 LQFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA 217 (250)
T ss_dssp EEEECCCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHHc
Confidence 568999999999999888 23344565 67899999998876
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=132.47 Aligned_cols=70 Identities=33% Similarity=0.554 Sum_probs=51.0
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhc-ccC-CCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQ-ITG-PLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 854 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~-l~~-~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~ 854 (1165)
++|+|+++++..+...+.. |.... +.. .... +.+++|+||||||||+++++++..++.+++.+++.++.+
T Consensus 40 ~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~---~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARI---PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCC---CCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCC---CCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 6899999999888876543 21110 110 1111 356999999999999999999999999999988866543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-10 Score=132.76 Aligned_cols=127 Identities=13% Similarity=0.110 Sum_probs=81.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.+.. .++..|+.+++...- ....++.||+++.-. .-+..+.|.+.+||.
T Consensus 125 ~~~vlilDE~~~l~~-------------~~~~~L~~~~~~~~~------~~~~~~~iI~~~~~~-~~~~~l~~~~~~r~~ 184 (389)
T 1fnn_A 125 LYMFLVLDDAFNLAP-------------DILSTFIRLGQEADK------LGAFRIALVIVGHND-AVLNNLDPSTRGIMG 184 (389)
T ss_dssp CCEEEEEETGGGSCH-------------HHHHHHHHHTTCHHH------HSSCCEEEEEEESST-HHHHTSCHHHHHHHT
T ss_pred CeEEEEEECccccch-------------HHHHHHHHHHHhCCC------CCcCCEEEEEEECCc-hHHHHhCHHhhhcCC
Confidence 467999999999832 266788888764210 001355666654311 011457889999988
Q ss_pred e-eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCC-ccCcchhHHHHHHHHHH
Q psy2392 499 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTE-NIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 499 ~-~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~-~~GAR~l~~~ie~~l~~ 576 (1165)
. .+.|+||+.+++.+++.. . +...+....+++++++.+++.+...-.... .+..|.+.+++..+...
T Consensus 185 ~~~i~~~pl~~~~~~~~l~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 185 KYVIRFSPYTKDQIFDILLD----R-------AKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp TCEEECCCCBHHHHHHHHHH----H-------HHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHH----H-------HHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 5 789999999999999841 1 111111226899999999998853100000 35689999999887654
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=127.07 Aligned_cols=79 Identities=18% Similarity=0.252 Sum_probs=51.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCC-CCCCCCchhhhccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~-~~p~dl~pel~gR~~ 1096 (1165)
..|+||||+|.+...... .....+++.|+++++. .++.+|+++.-.. ..-..+.|.|.+||.
T Consensus 116 ~~vl~iDe~~~l~~~~~~-----~~~~~~~~~l~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~l~~r~~ 178 (195)
T 1jbk_A 116 NVILFIDELHTMVGAGKA-----DGAMDAGNMLKPALAR------------GELHCVGATTLDEYRQYIEKDAALERRFQ 178 (195)
T ss_dssp TEEEEEETGGGGTT-----------CCCCHHHHHHHHHT------------TSCCEEEEECHHHHHHHTTTCHHHHTTEE
T ss_pred CeEEEEeCHHHHhccCcc-----cchHHHHHHHHHhhcc------------CCeEEEEeCCHHHHHHHHhcCHHHHHHhc
Confidence 459999999999865321 1112367777777764 2455677654110 000257799999998
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
.+.|.+++.++..+||+
T Consensus 179 -~i~~~~p~~~~~~~il~ 195 (195)
T 1jbk_A 179 -KVFVAEPSVEDTIAILR 195 (195)
T ss_dssp -EEECCCCCHHHHHTTCC
T ss_pred -eeecCCCCHHHHHHHhC
Confidence 47999999999988763
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-11 Score=136.84 Aligned_cols=68 Identities=10% Similarity=0.260 Sum_probs=56.0
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|+++.. .|+.||+.+|.. ..+++||.+. ++|+.+.|.+++|
T Consensus 82 ~~kvviIdead~lt~~-------------a~naLLk~LEep----------~~~t~fIl~t----~~~~kl~~tI~SR-- 132 (305)
T 2gno_A 82 TRKYVIVHDCERMTQQ-------------AANAFLKALEEP----------PEYAVIVLNT----RRWHYLLPTIKSR-- 132 (305)
T ss_dssp SSEEEEETTGGGBCHH-------------HHHHTHHHHHSC----------CTTEEEEEEE----SCGGGSCHHHHTT--
T ss_pred CceEEEeccHHHhCHH-------------HHHHHHHHHhCC----------CCCeEEEEEE----CChHhChHHHHce--
Confidence 3679999999999765 577999999962 3556676663 4688999999999
Q ss_pred eeEecCCCCHHHHHHHHh
Q psy2392 499 IRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~ 516 (1165)
++.|++|+.+++.+.|.
T Consensus 133 -~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 133 -VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp -SEEEECCCCHHHHHHHH
T ss_pred -eEeCCCCCHHHHHHHHH
Confidence 67999999999999884
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-11 Score=135.51 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=88.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|.+...... .+...|+..++.. ...++.+|+++.-. .-...+.+.+.+||.
T Consensus 128 ~~~vlilDE~~~l~~~~~~---------~~l~~l~~~~~~~---------~~~~~~~I~~~~~~-~~~~~~~~~~~~r~~ 188 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYND---------DILYKLSRINSEV---------NKSKISFIGITNDV-KFVDLLDPRVKSSLS 188 (386)
T ss_dssp SCEEEEEETHHHHHHSSCS---------THHHHHHHHHHSC---------CC--EEEEEEESCG-GGGGGCTTHHHHTTT
T ss_pred CeEEEEEcChhhhhccCcC---------HHHHHHhhchhhc---------CCCeEEEEEEECCC-ChHhhhCHHHhccCC
Confidence 3679999999999865311 1444565555431 23456677775421 111346788889986
Q ss_pred -eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHh
Q psy2392 499 -IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEV 577 (1165)
Q Consensus 499 -~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~ 577 (1165)
..+.|++|+.+++.+++.. . +...+-...+++++++.+++.+.. ..+..|.+.++++.+....
T Consensus 189 ~~~i~l~~l~~~~~~~il~~----~-------~~~~~~~~~~~~~~~~~l~~~~~~-----~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 189 EEEIIFPPYNAEELEDILTK----R-------AQMAFKPGVLPDNVIKLCAALAAR-----EHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp TEEEEECCCCHHHHHHHHHH----H-------HHHHBCSSCSCHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHH
T ss_pred CeeEEeCCCCHHHHHHHHHH----H-------HHhhccCCCCCHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHH
Confidence 4789999999999999951 1 111122346899999999998853 1366888888888776543
Q ss_pred hcccCCCeeEEcccccccccc
Q psy2392 578 SFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 578 ~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
..+. ...|+.+.|++.+.
T Consensus 253 ~~~~---~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 253 ERMK---DTKVKEEYVYMAKE 270 (386)
T ss_dssp HHTT---CSSCCHHHHHHHHH
T ss_pred HhcC---CCccCHHHHHHHHH
Confidence 2211 12366666655443
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.8e-11 Score=135.16 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeecc-CceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIK-TDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~-t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..++||||+|.+.... ..|..|..+++-... .. ..++.||+++.-. .-+..+.|.+.+||.
T Consensus 131 ~~vlilDEi~~l~~~~-----------~~~~~l~~l~~~~~~------~~~~~~~~~I~~t~~~-~~~~~l~~~l~~r~~ 192 (387)
T 2v1u_A 131 IYIIVLDEIDFLPKRP-----------GGQDLLYRITRINQE------LGDRVWVSLVGITNSL-GFVENLEPRVKSSLG 192 (387)
T ss_dssp EEEEEEETTTHHHHST-----------THHHHHHHHHHGGGC------C-----CEEEEECSCS-TTSSSSCHHHHTTTT
T ss_pred eEEEEEccHhhhcccC-----------CCChHHHhHhhchhh------cCCCceEEEEEEECCC-chHhhhCHHHHhcCC
Confidence 4499999999997652 134445544431100 01 3456777776521 112568899999997
Q ss_pred e-EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 I-RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i-~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
. .+.|++|+.+++.+|+. ..+.. .+ .+ ..+++++++.|++.+.
T Consensus 193 ~~~i~l~~l~~~~~~~il~----~~~~~---~~--~~--~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 193 EVELVFPPYTAPQLRDILE----TRAEE---AF--NP--GVLDPDVVPLCAALAA 236 (387)
T ss_dssp SEECCBCCCCHHHHHHHHH----HHHHH---HB--CT--TTBCSSHHHHHHHHHH
T ss_pred CeEEeeCCCCHHHHHHHHH----HHHHh---hc--cC--CCCCHHHHHHHHHHHH
Confidence 6 78999999999999998 11111 01 22 3578999999998876
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-10 Score=131.18 Aligned_cols=101 Identities=11% Similarity=0.125 Sum_probs=78.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||+|+++.. .++.||..+|.. ..+++||.++ ++|+.+.|.+++|+.
T Consensus 108 ~~kvviIdead~l~~~-------------a~naLLk~lEep----------~~~~~~Il~t----~~~~~l~~ti~SRc~ 160 (334)
T 1a5t_A 108 GAKVVWVTDAALLTDA-------------AANALLKTLEEP----------PAETWFFLAT----REPERLLATLRSRCR 160 (334)
T ss_dssp SCEEEEESCGGGBCHH-------------HHHHHHHHHTSC----------CTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CcEEEEECchhhcCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChHhCcHHHhhcce
Confidence 4789999999999765 567999999862 3456666653 467889999999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
++.|++++.+++.++|.. . . .+++++++.+++.+ +++.|.+.+.+++.
T Consensus 161 -~~~~~~~~~~~~~~~L~~-----------~----~---~~~~~~~~~l~~~s--------~G~~r~a~~~l~~~ 208 (334)
T 1a5t_A 161 -LHYLAPPPEQYAVTWLSR-----------E----V---TMSQDALLAALRLS--------AGSPGAALALFQGD 208 (334)
T ss_dssp -EEECCCCCHHHHHHHHHH-----------H----C---CCCHHHHHHHHHHT--------TTCHHHHHHTTSSH
T ss_pred -eeeCCCCCHHHHHHHHHH-----------h----c---CCCHHHHHHHHHHc--------CCCHHHHHHHhccc
Confidence 579999999999988841 0 1 57899999998876 56778777776554
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.1e-11 Score=134.97 Aligned_cols=96 Identities=19% Similarity=0.298 Sum_probs=67.1
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~g 1093 (1165)
+.+++||||||.+.... ..|..|+.+++.. ......++|++ . ..|. .+.|.|.+
T Consensus 98 ~~~vL~iDEi~~l~~~~-----------~~~~~l~~~l~~~--------~~~~~~iii~~-~---~~~~~l~~l~~~L~s 154 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTL--------YLLEKQIILAS-D---RHPQKLDGVSDRLVS 154 (324)
T ss_dssp TCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHH--------HHTTCEEEEEE-S---SCGGGCTTSCHHHHH
T ss_pred CCCEEEEcCcccccCCh-----------HHHHHHHHHHHHH--------HHCCCeEEEEe-c---CChHHHHHhhhHhhh
Confidence 46899999999997531 2677777776521 11222333333 2 2333 58899999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
||. ..++|+| +.+++.+||. ..+...|+ .+++++++.|+..+
T Consensus 155 R~~~~~~i~l~~-~~~e~~~il~-----------~~~~~~~~--~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 155 RFEGGILVEIEL-DNKTRFKIIK-----------EKLKEFNL--ELRKEVIDYLLENT 198 (324)
T ss_dssp HHHTSEEEECCC-CHHHHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHHC
T ss_pred cccCceEEEeCC-CHHHHHHHHH-----------HHHHhcCC--CCCHHHHHHHHHhC
Confidence 996 6789999 9999999998 22334455 78899999999876
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.7e-11 Score=123.11 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=46.9
Q ss_pred cccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCcc
Q psy2392 782 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFT 853 (1165)
Q Consensus 782 ~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~~ 853 (1165)
+++|+..+...+...+... . ....++||+||||||||++|+++++.. +.+|+ ++|+.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----a--------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----S--------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----T--------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHH----h--------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 5789999999888887642 0 013679999999999999999999987 77899 9998754
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.4e-11 Score=121.99 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=47.2
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKFT 255 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~~ 255 (1165)
+++|+..+++.+...+... . ....++||+||||||||++|+++++.. +.+|+ ++++.+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----a--------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~ 63 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----S--------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPD 63 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----T--------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTT
T ss_pred CceeCCHHHHHHHHHHHHH----h--------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCC
Confidence 6889999999988877642 0 013689999999999999999999987 67899 9998754
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.15 E-value=8.1e-11 Score=133.04 Aligned_cols=67 Identities=10% Similarity=0.264 Sum_probs=55.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||||||+|.+... .|+.||+.+|... .+..||.+. ++|+.++|.+++|
T Consensus 83 ~kvviIdead~lt~~-------------a~naLLk~LEep~----------~~t~fIl~t----~~~~kl~~tI~SR--- 132 (305)
T 2gno_A 83 RKYVIVHDCERMTQQ-------------AANAFLKALEEPP----------EYAVIVLNT----RRWHYLLPTIKSR--- 132 (305)
T ss_dssp SEEEEETTGGGBCHH-------------HHHHTHHHHHSCC----------TTEEEEEEE----SCGGGSCHHHHTT---
T ss_pred ceEEEeccHHHhCHH-------------HHHHHHHHHhCCC----------CCeEEEEEE----CChHhChHHHHce---
Confidence 459999999999865 7899999999643 345566553 4688999999999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
+++|++|+.+++.+.|.
T Consensus 133 ~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 133 VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp SEEEECCCCHHHHHHHH
T ss_pred eEeCCCCCHHHHHHHHH
Confidence 57899999999999987
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=124.32 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=67.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
..+++||||+|.+.... ..|..|+.+++... ....+.+|+++......-..+.+.|.+||.
T Consensus 104 ~~~vliiDe~~~~~~~~-----------~~~~~l~~~l~~~~--------~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~ 164 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHP-----------LWEEAIFDLYNRVA--------EQKRGSLIVSASASPMEAGFVLPDLVSRMH 164 (242)
T ss_dssp GSSEEEEETGGGGTTCH-----------HHHHHHHHHHHHHH--------HHCSCEEEEEESSCTTTTTCCCHHHHHHHH
T ss_pred CCCEEEEeccccccCCH-----------HHHHHHHHHHHHHH--------HcCCCeEEEEcCCCHHHHHHhhhhhhhHhh
Confidence 56899999999986541 13777888776321 111222333333221111245599999996
Q ss_pred --eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1097 --IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1097 --i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
..++|++++.+++.+++. ..++..|+ .+++++++.|++.+
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~ 206 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQ-----------RRAAMRGL--QLPEDVGRFLLNRM 206 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHHT
T ss_pred cCceEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc
Confidence 778999999999999888 23344565 68899999998765
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.5e-12 Score=124.71 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=45.2
Q ss_pred cccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 782 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 782 ~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+++|++.+++.+...+.... . ...+++|+||||||||++|+++++... +|+.++++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-K-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-T-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHh-C-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence 57899999998888876421 1 136799999999999999999999888 8888888764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.3e-11 Score=148.41 Aligned_cols=154 Identities=15% Similarity=0.230 Sum_probs=92.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-----------eecCceEEEEEeCCcccCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-----------IIKTDHILFIASGAFHLAKPS 487 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-----------~~~t~~ilfI~~gaf~~~~p~ 487 (1165)
.+|++||||||++.+. +|..|+..+|...+..... .....++.+|++++.. -..
T Consensus 201 ~~gvL~LDEi~~l~~~-------------~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~--~~~ 265 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLK-------------MQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD--TVD 265 (604)
T ss_dssp TTSEEEETTGGGSCHH-------------HHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH--HHH
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH--HHh
Confidence 6889999999998654 7889999998665542110 0011355678886421 013
Q ss_pred CCchhhhCCCC---eeEecCCCC---HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCC--
Q psy2392 488 DLIPELQGRFP---IRVELDSLS---ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTE-- 559 (1165)
Q Consensus 488 ~l~pel~~R~~---~~v~~~~L~---~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~-- 559 (1165)
.+.|+|++||+ +.+.|.++. .+.+..++. ...+.+...+....+++++++.|++.+........
T Consensus 266 ~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l 337 (604)
T 3k1j_A 266 KMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQ--------FVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHL 337 (604)
T ss_dssp HSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHH--------HHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEE
T ss_pred hcCHHHHHHhhccceEeeccccccCCHHHHHHHHH--------HHHHHHhhccCcccCCHHHHHHHHHHHhhhhcccccc
Confidence 58999999997 677876543 344444442 22223333345568999999999998875311100
Q ss_pred ccCcchhHHHHHHHHHHhhcccCCCeeEEcccccccccc
Q psy2392 560 NIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 560 ~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
..-.|.|.++++....-...+. .-.|+.+.|++.+.
T Consensus 338 ~~~~R~l~~llr~A~~~A~~~~---~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 338 TLRLRDLGGIVRAAGDIAVKKG---KKYVEREDVIEAVK 373 (604)
T ss_dssp ECCHHHHHHHHHHHHHHHHHTT---CSSBCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcC---cccccHHHHHHHHH
Confidence 0126777777776532211111 12467777766553
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-11 Score=123.04 Aligned_cols=58 Identities=14% Similarity=0.282 Sum_probs=45.7
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+++|++.+++.+.+.+.... . ...+++|+||||||||++|++++.... +|+.++++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-K-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-T-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHHh-C-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhC
Confidence 68899999999888876420 0 136899999999999999999999887 8998988764
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.10 E-value=7.5e-10 Score=127.37 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=68.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
+.||||||+|.+.. .+|..|+.+++...- ....++.||+++.-. .-+..+.+.+.+||..
T Consensus 126 ~~vlilDE~~~l~~-------------~~~~~L~~~~~~~~~------~~~~~~~iI~~~~~~-~~~~~l~~~~~~r~~~ 185 (389)
T 1fnn_A 126 YMFLVLDDAFNLAP-------------DILSTFIRLGQEADK------LGAFRIALVIVGHND-AVLNNLDPSTRGIMGK 185 (389)
T ss_dssp CEEEEEETGGGSCH-------------HHHHHHHHHTTCHHH------HSSCCEEEEEEESST-HHHHTSCHHHHHHHTT
T ss_pred eEEEEEECccccch-------------HHHHHHHHHHHhCCC------CCcCCEEEEEEECCc-hHHHHhCHHhhhcCCC
Confidence 45999999999922 378888888874210 011356666664311 0114578899999875
Q ss_pred -EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 -RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 -~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|+||+.+++.+++.. . +...+....|++++++.|++.+.
T Consensus 186 ~~i~~~pl~~~~~~~~l~~----~-------~~~~~~~~~~~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 186 YVIRFSPYTKDQIFDILLD----R-------AKAGLAEGSYSEDILQMIADITG 228 (389)
T ss_dssp CEEECCCCBHHHHHHHHHH----H-------HHHHBCTTSSCHHHHHHHHHHHS
T ss_pred ceEEeCCCCHHHHHHHHHH----H-------HHhhcCCCCCCHHHHHHHHHHHh
Confidence 789999999999999982 1 11101122689999999998885
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.09 E-value=6.7e-10 Score=126.82 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=67.7
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..||+|||+|++... .|+.||+.+|.. ..++.||.+. ++|+.+.|.+++|+.
T Consensus 109 ~kvviIdead~l~~~-------------a~naLLk~lEep----------~~~~~~Il~t----~~~~~l~~ti~SRc~- 160 (334)
T 1a5t_A 109 AKVVWVTDAALLTDA-------------AANALLKTLEEP----------PAETWFFLAT----REPERLLATLRSRCR- 160 (334)
T ss_dssp CEEEEESCGGGBCHH-------------HHHHHHHHHTSC----------CTTEEEEEEE----SCGGGSCHHHHTTSE-
T ss_pred cEEEEECchhhcCHH-------------HHHHHHHHhcCC----------CCCeEEEEEe----CChHhCcHHHhhcce-
Confidence 569999999999765 788999999963 2455666553 468889999999997
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
+++|++++.+++.++|.. . . .++++++..++..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~-----------~----~---~~~~~~~~~l~~~s 194 (334)
T 1a5t_A 161 LHYLAPPPEQYAVTWLSR-----------E----V---TMSQDALLAALRLS 194 (334)
T ss_dssp EEECCCCCHHHHHHHHHH-----------H----C---CCCHHHHHHHHHHT
T ss_pred eeeCCCCCHHHHHHHHHH-----------h----c---CCCHHHHHHHHHHc
Confidence 579999999999988871 1 1 46788888887765
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-11 Score=150.12 Aligned_cols=121 Identities=19% Similarity=0.250 Sum_probs=75.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeeecc--CceEEEEecCCCCC-----CC----C
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGIIK--TDHILFIASGAFHL-----AK----P 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~~~--t~~ilfI~~gaf~~-----~~----p 1084 (1165)
..||+||||||++... +|..|+..||...++. +.|... ..++.+||+.+-.. .+ .
T Consensus 391 ~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~n 457 (595)
T 3f9v_A 391 DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDN 457 (595)
T ss_dssp SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTT
T ss_pred CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhc
Confidence 6799999999998655 8999999999877753 333221 23466777754210 00 0
Q ss_pred CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhH-------------HHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1085 SDLIPELQGRFPIRVELDSLSISDFTRIMTSTN-------------VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1085 ~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~-------------~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
-.|.|+|++||++++.+.++...+...|++... ...+++|....+. .+.-.++++|.+.|+....+
T Consensus 458 i~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~ 536 (595)
T 3f9v_A 458 INLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK-YVTPKITSEAKNLITDFFVE 536 (595)
T ss_dssp TCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH-HHCCCCCCCTHHHHHHHHTT
T ss_pred cCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 178899999998766676766555444443111 1223444443332 22336788899988887554
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.6e-11 Score=120.29 Aligned_cols=46 Identities=37% Similarity=0.485 Sum_probs=38.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+.++|++..++.+...+... .+.+++|+||||||||++|+++++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--------------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--------------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--------------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 47899999888887776431 23789999999999999999999987
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.03 E-value=8.4e-10 Score=126.30 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=67.6
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
+.||||||+|.+...... .++..|+..++.. ...++.+|++|.-. .-...+.+.+.+||..
T Consensus 129 ~~vlilDE~~~l~~~~~~---------~~l~~l~~~~~~~---------~~~~~~~I~~~~~~-~~~~~~~~~~~~r~~~ 189 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYND---------DILYKLSRINSEV---------NKSKISFIGITNDV-KFVDLLDPRVKSSLSE 189 (386)
T ss_dssp CEEEEEETHHHHHHSSCS---------THHHHHHHHHHSC---------CC--EEEEEEESCG-GGGGGCTTHHHHTTTT
T ss_pred eEEEEEcChhhhhccCcC---------HHHHHHhhchhhc---------CCCeEEEEEEECCC-ChHhhhCHHHhccCCC
Confidence 569999999999865311 2555666655431 23467777776511 0113467889999863
Q ss_pred -EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 -RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 -~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.+.|+||+.+++.++|.. . +...+-...+++++++.|+..+.
T Consensus 190 ~~i~l~~l~~~~~~~il~~----~-------~~~~~~~~~~~~~~~~~l~~~~~ 232 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTK----R-------AQMAFKPGVLPDNVIKLCAALAA 232 (386)
T ss_dssp EEEEECCCCHHHHHHHHHH----H-------HHHHBCSSCSCHHHHHHHHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHH----H-------HHhhccCCCCCHHHHHHHHHHHH
Confidence 789999999999999982 1 11111133688999999988776
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-08 Score=139.48 Aligned_cols=90 Identities=16% Similarity=0.106 Sum_probs=57.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCcee-eee-ceeecCceEEEEEeCCccc-CCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTV-NTK-YGIIKTDHILFIASGAFHL-AKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v-~~~-~~~~~t~~ilfI~~gaf~~-~~p~~l~pel~~ 495 (1165)
...|+|||||+.......+ .. .+...|.+++|.+.+ ..+ ...+...++.||||.+-.. .-...+.|.|++
T Consensus 1336 k~~VlFiDEinmp~~d~yg---~q----~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllR 1408 (2695)
T 4akg_A 1336 KNLVLFCDEINLPKLDKYG---SQ----NVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTR 1408 (2695)
T ss_dssp SCEEEEEETTTCSCCCSSS---CC----HHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHT
T ss_pred ceEEEEecccccccccccC---ch----hHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhh
Confidence 3579999999975544332 11 244456667774322 211 1122336788998843111 111369999999
Q ss_pred CCCeeEecCCCCHHHHHHHHh
Q psy2392 496 RFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
||. ++.++.++.+++.+|+.
T Consensus 1409 rf~-vi~i~~P~~~~l~~I~~ 1428 (2695)
T 4akg_A 1409 HAA-ILYLGYPSGKSLSQIYE 1428 (2695)
T ss_dssp TEE-EEECCCCTTTHHHHHHH
T ss_pred eee-EEEeCCCCHHHHHHHHH
Confidence 995 57999999999999994
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.5e-10 Score=133.16 Aligned_cols=97 Identities=20% Similarity=0.331 Sum_probs=66.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~g 1093 (1165)
+..|+||||||.+... +..|..|+.+++.-. .....++|++ . ..|. .+.+.|.+
T Consensus 194 ~~~vL~IDEi~~l~~~-----------~~~q~~l~~~l~~l~--------~~~~~iIitt-~---~~~~~l~~l~~~L~s 250 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGK-----------TGVQTELFHTFNELH--------DSGKQIVICS-D---REPQKLSEFQDRLVS 250 (440)
T ss_dssp TCSEEEEECGGGGSSC-----------HHHHHHHHHHHHHHH--------TTTCEEEEEE-S---SCGGGCSSCCHHHHH
T ss_pred CCCEEEEeCcccccCC-----------hHHHHHHHHHHHHHH--------HCCCeEEEEE-C---CCHHHHHHHHHHHHh
Confidence 4679999999999763 126788888876311 1122333332 1 1222 37899999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
||. ..+.|.+++.+++.+||. ..+..+|+ .+++++++.||..+
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~-----------~~~~~~~~--~i~~e~l~~la~~~ 295 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIAR-----------KMLEIEHG--ELPEEVLNFVAENV 295 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHH-----------HHHHHHTC--CCCTTHHHHHHHHC
T ss_pred hccCCeEEEeCCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhc
Confidence 995 668999999999999998 22233455 67899999998755
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-10 Score=144.14 Aligned_cols=110 Identities=17% Similarity=0.367 Sum_probs=73.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeee------------ccCceEEEEecCCCCCCCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGI------------IKTDHILFIASGAFHLAKP 1084 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~------------~~t~~ilfI~~gaf~~~~p 1084 (1165)
+.|++||||||++... +|..|+..+|...+..- |. ....++.+|++|.-.. .
T Consensus 201 ~~gvL~LDEi~~l~~~-------------~q~~Ll~~Le~~~~~~~-g~~~~~~~~~l~~~~~p~~~~vI~atn~~~--~ 264 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLK-------------MQQSLLTAMQEKKFPIT-GQSEMSSGAMVRTEPVPCDFVLVAAGNLDT--V 264 (604)
T ss_dssp TTSEEEETTGGGSCHH-------------HHHHHHHHHHHSEECCB-CSCTTSGGGGCBCSCEECCCEEEEEECHHH--H
T ss_pred CCCEEEEechhhCCHH-------------HHHHHHHHHHcCcEEec-ccccccccccCCCCccceeEEEEEecCHHH--H
Confidence 6799999999998543 89999999996554321 11 0113566888875210 1
Q ss_pred CCCchhhhccCC---eEEEcCCC---CHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1085 SDLIPELQGRFP---IRVELDSL---SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1085 ~dl~pel~gR~~---i~v~l~~l---~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
..+.|+|..||. +.+.|+++ +.+.+..++. .....+...+....|+++|++.|++.+.
T Consensus 265 ~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~--------~~~~~~~~~~~~~~ls~eAl~~Li~~~~ 328 (604)
T 3k1j_A 265 DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQ--------FVAQEVKRDGKIPHFTKEAVEEIVREAQ 328 (604)
T ss_dssp HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHH--------HHHHHHHHHCSSCCBBHHHHHHHHHHHH
T ss_pred hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHH--------HHHHHHhhccCcccCCHHHHHHHHHHHh
Confidence 368899999997 67787654 4444555444 2223333334556899999999999876
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.6e-10 Score=118.27 Aligned_cols=46 Identities=37% Similarity=0.485 Sum_probs=38.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+.++|++..++.+...+... .+.+++|+||||||||++|+.+++.+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--------------~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--------------TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--------------SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--------------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 67899999888877766421 14789999999999999999999987
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-09 Score=126.95 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=89.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
.+|++|||||+.+... +|..||..++.+.+..-.+ .....++-+|++++... .....|.+.|.
T Consensus 231 ~~gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~ 297 (387)
T 1ny5_A 231 DGGTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLY 297 (387)
T ss_dssp TTSEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCcEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHH
Confidence 5799999999999766 7889999998655432111 11223455777754221 12345888998
Q ss_pred CCCC-eeEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.|+. +.+.++||.+ +|+..++ ..++.++... .+.. ..+++++++.|..+.+ .++.|-|++++
T Consensus 298 ~rl~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~---~~~~~~~~~~~a~~~l~~~~w-------pGNvreL~~~i 363 (387)
T 1ny5_A 298 YRLGVIEIEIPPLRERKEDIIPLA----NHFLKKFSRK---YAKEVEGFTKSAQELLLSYPW-------YGNVRELKNVI 363 (387)
T ss_dssp HHHTTEEEECCCGGGCHHHHHHHH----HHHHHHHHHH---TTCCCCEECHHHHHHHHHSCC-------TTHHHHHHHHH
T ss_pred HhhcCCeecCCcchhccccHHHHH----HHHHHHHHHH---cCCCCCCCCHHHHHHHHhCCC-------CcHHHHHHHHH
Confidence 8874 6688999976 7888777 3445444433 2433 4699999999986443 46799999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++.+.
T Consensus 364 ~~~~~ 368 (387)
T 1ny5_A 364 ERAVL 368 (387)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=125.48 Aligned_cols=131 Identities=21% Similarity=0.283 Sum_probs=90.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
..|.+|||||+.+... +|..||+.+|.+.+..-.+ ....-++-+|++++-.. .....|.+.|.
T Consensus 222 ~~gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLY 288 (368)
T ss_dssp TTSEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCCeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 5789999999999876 7889999998665432111 01112445677754221 12345888999
Q ss_pred CCCCe-eEecCCCCH--HHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHH
Q psy2392 495 GRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAME 571 (1165)
Q Consensus 495 ~R~~~-~v~~~~L~~--~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie 571 (1165)
.|+.+ .|.++||.+ +|+..++ ..++.++...+.. -...++++|++.|..+.+ .+..|.|+++|+
T Consensus 289 ~rl~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~~~~--~~~~~~~~a~~~L~~~~w-------pGNvreL~n~i~ 355 (368)
T 3dzd_A 289 YRLSVFQIYLPPLRERGKDVILLA----EYFLKKFAKEYKK--NCFELSEETKEYLMKQEW-------KGNVRELKNLIE 355 (368)
T ss_dssp HHHTSEEEECCCGGGSTTHHHHHH----HHHHHHHHHHTTC--CCCCBCHHHHHHHHTCCC-------TTHHHHHHHHHH
T ss_pred HHhCCeEEeCCChhhchhhHHHHH----HHHHHHHHHHcCC--CCCCcCHHHHHHHHhCCC-------CcHHHHHHHHHH
Confidence 99876 488999998 8988887 4455554443322 235799999999986553 366899999999
Q ss_pred HHHH
Q psy2392 572 KLLE 575 (1165)
Q Consensus 572 ~~l~ 575 (1165)
+++.
T Consensus 356 ~~~~ 359 (368)
T 3dzd_A 356 RAVI 359 (368)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9864
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-09 Score=125.14 Aligned_cols=116 Identities=21% Similarity=0.305 Sum_probs=81.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++|||||+.+... +|..||+.+|...+. +.|.- ..-++-+|++..-.. .....|.+.|
T Consensus 222 ~~gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~-~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL 287 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQR-------------VQAKLLRVLETGSFT-RLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDL 287 (368)
T ss_dssp TTSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEC-CBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred CCCeEEecChhhCCHH-------------HHHHHHHHHHhCCcc-cCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHH
Confidence 6799999999999876 999999999865543 22321 122455777765221 1234577889
Q ss_pred hccCCe-EEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFPI-RVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~i-~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+.+ .+.++||.+ +|+..++. ..+.++..-+.... +.|+++|++.|..+.+..
T Consensus 288 ~~rl~~~~i~lPpLreR~~Di~~l~~----~~l~~~~~~~~~~~--~~~~~~a~~~L~~~~wpG 345 (368)
T 3dzd_A 288 YYRLSVFQIYLPPLRERGKDVILLAE----YFLKKFAKEYKKNC--FELSEETKEYLMKQEWKG 345 (368)
T ss_dssp HHHHTSEEEECCCGGGSTTHHHHHHH----HHHHHHHHHTTCCC--CCBCHHHHHHHHTCCCTT
T ss_pred HHHhCCeEEeCCChhhchhhHHHHHH----HHHHHHHHHcCCCC--CCcCHHHHHHHHhCCCCc
Confidence 999876 478999998 89988877 56666655443322 479999999998776655
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.4e-09 Score=121.86 Aligned_cols=115 Identities=19% Similarity=0.296 Sum_probs=79.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeec--cCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGII--KTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~--~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|++|||||+.+... +|..||..+|...+. +.|.- ..-++-+|++..-.. .....|.+.|
T Consensus 231 ~~gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~-~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl 296 (387)
T 1ny5_A 231 DGGTLFLDEIGELSLE-------------AQAKLLRVIESGKFY-RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDL 296 (387)
T ss_dssp TTSEEEEESGGGCCHH-------------HHHHHHHHHHHSEEC-CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred CCcEEEEcChhhCCHH-------------HHHHHHHHHhcCcEE-eCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHH
Confidence 6799999999999876 999999999865543 22321 223456777755221 1224577888
Q ss_pred hccC-CeEEEcCCCCH--HHHHHHHhhhHHHhHHHHHHHHhhcCCc-eEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRF-PIRVELDSLSI--SDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~-~i~v~l~~l~~--~~l~~il~~~~~~l~~q~~~l~~~egv~-l~~~~~ai~~ia~~a~~~ 1152 (1165)
..|+ .+.+.++||-+ +|+..++. ..+.++..-+ |.. ..|+++|++.|....+..
T Consensus 297 ~~rl~~~~i~lPpLreR~~Di~~l~~----~~l~~~~~~~---~~~~~~~~~~a~~~l~~~~wpG 354 (387)
T 1ny5_A 297 YYRLGVIEIEIPPLRERKEDIIPLAN----HFLKKFSRKY---AKEVEGFTKSAQELLLSYPWYG 354 (387)
T ss_dssp HHHHTTEEEECCCGGGCHHHHHHHHH----HHHHHHHHHT---TCCCCEECHHHHHHHHHSCCTT
T ss_pred HHhhcCCeecCCcchhccccHHHHHH----HHHHHHHHHc---CCCCCCCCHHHHHHHHhCCCCc
Confidence 8886 56789999976 88887777 5555554443 333 369999999998766654
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.2e-08 Score=119.97 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=90.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCccc-CC------CCCCch
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL-AK------PSDLIP 491 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~-~~------p~~l~p 491 (1165)
..||+|||||+++.++ +|..||..||.++++.. |..-..++.+|||.+-.. .. -..|.+
T Consensus 300 dgGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~-G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 300 DGGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVD-GIALNARCAVLAAINPGEQWPSDPPIARIDLDQ 365 (506)
T ss_dssp TTSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEET-TEEEECCCEEEEEECCCC--CCSCGGGGCCSCH
T ss_pred CCCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEEC-CEEcCCCeEEEEEeCcccccCCCCCccccCCCh
Confidence 5799999999999766 77799999998877654 431123456777743211 00 016888
Q ss_pred hhhCCCCeeEecCCCCHHHH-----HHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccc----------
Q psy2392 492 ELQGRFPIRVELDSLSISDF-----TRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINE---------- 556 (1165)
Q Consensus 492 el~~R~~~~v~~~~L~~~~l-----~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~---------- 556 (1165)
.+++||++.+.+......+- ...+. ...++.+....+...+...+++++.+.|.+.....-.
T Consensus 366 alLDRFDLi~i~~d~pd~e~d~e~~~~~ls---~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~ 442 (506)
T 3f8t_A 366 DFLSHFDLIAFLGVDPRPGEPEEQDTEVPS---YTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGL 442 (506)
T ss_dssp HHHTTCSEEEETTC--------------CC---HHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhheeeEEEecCCCChhHhhcccCCCCC---HHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccccccc
Confidence 99999998765544322221 11221 3344555555544566789999999999876543210
Q ss_pred cCCccCcchhHHHHHHHHHHhhcccCCCeeEEccccccccc
Q psy2392 557 RTENIGARRLYTAMEKLLEEVSFNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 557 ~~~~~GAR~l~~~ie~~l~~~~~~~~~~~~~i~~~~v~~~~ 597 (1165)
..-....|.+..++.-.-.-.. ...+ -.++.++|++.+
T Consensus 443 ~~~giSpR~leaLiRlA~A~A~--L~gR-~~V~~eDV~~Ai 480 (506)
T 3f8t_A 443 PTLPVTRRQLESVERLAKAHAR--MRLS-DDVEPEDVDIAA 480 (506)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHH--HTTC-SEECHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHH--HcCc-CCCCHHHHHHHH
Confidence 1113445777776643222111 1111 346666666543
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.1e-07 Score=127.79 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=57.2
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-e-eeeccCceEEEEecCCCCCCCC-----CCCchhh
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-K-YGIIKTDHILFIASGAFHLAKP-----SDLIPEL 1091 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k-~~~~~t~~ilfI~~gaf~~~~p-----~dl~pel 1091 (1165)
.|+||||||.-.....+ + ..+...|..++|...+.. + ...+...++.||||.+ .| ..+.|.|
T Consensus 1338 ~VlFiDEinmp~~d~yg---~----q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~N----pp~~gGR~~l~~rl 1406 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYG---S----QNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACN----PPTDPGRIPMSERF 1406 (2695)
T ss_dssp EEEEEETTTCSCCCSSS---C----CHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEEC----CTTSTTCCCCCHHH
T ss_pred EEEEecccccccccccC---c----hhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecC----CCccCCCccCChhh
Confidence 49999999974443221 1 125566777777543321 1 1122336789998853 34 3689999
Q ss_pred hccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1092 QGRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1092 ~gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
++||.+ +.++.++.+++.+|+.
T Consensus 1407 lRrf~v-i~i~~P~~~~l~~I~~ 1428 (2695)
T 4akg_A 1407 TRHAAI-LYLGYPSGKSLSQIYE 1428 (2695)
T ss_dssp HTTEEE-EECCCCTTTHHHHHHH
T ss_pred hheeeE-EEeCCCCHHHHHHHHH
Confidence 999965 7999999999999998
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=7.7e-08 Score=111.54 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=75.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecC--ceEEEEEeCCcccCCCCCCc---hhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHLAKPSDLI---PEL 493 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t--~~ilfI~~gaf~~~~p~~l~---pel 493 (1165)
.+.||+|||+|.+...... ...+...|+..++.. ..+. .++.+|+++... .-...+. |.+
T Consensus 138 ~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~~~-------~~~~~~~~v~lI~~~~~~-~~~~~l~~~~~~~ 202 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEEI-------PSRDGVNRIGFLLVASDV-RALSYMREKIPQV 202 (412)
T ss_dssp CEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHHS-------CCTTSCCBEEEEEEEEET-HHHHHHHHHCHHH
T ss_pred CeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHHhc-------ccCCCCceEEEEEEeccc-cHHHHHhhhcchh
Confidence 4679999999999753110 012334455544321 0112 566777665310 0001234 777
Q ss_pred hCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCc---cCcchhHHHH
Q psy2392 494 QGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTEN---IGARRLYTAM 570 (1165)
Q Consensus 494 ~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~---~GAR~l~~~i 570 (1165)
.+|+..++.|.+|+.+++.+++.. . +...+....+++++++.+++.+... . +..|.+..++
T Consensus 203 ~~~~~~~i~l~~l~~~e~~~ll~~----~-------~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 203 ESQIGFKLHLPAYKSRELYTILEQ----R-------AELGLRDTVWEPRHLELISDVYGED-----KGGDGSARRAIVAL 266 (412)
T ss_dssp HTTCSEEEECCCCCHHHHHHHHHH----H-------HHHHBCTTSCCHHHHHHHHHHHCGG-----GTSCCCHHHHHHHH
T ss_pred hhhcCCeeeeCCCCHHHHHHHHHH----H-------HHhcCCCCCCChHHHHHHHHHHHHh-----ccCCCcHHHHHHHH
Confidence 788887899999999999999841 1 1111122357899999999888421 2 5578888887
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
..++.
T Consensus 267 ~~a~~ 271 (412)
T 1w5s_A 267 KMACE 271 (412)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-07 Score=107.53 Aligned_cols=105 Identities=11% Similarity=0.173 Sum_probs=63.6
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccC--ceEEEEecCCCCCCCCC---CCc---
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKT--DHILFIASGAFHLAKPS---DLI--- 1088 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t--~~ilfI~~gaf~~~~p~---dl~--- 1088 (1165)
.+.+|||||+|.+...... ...++..|+..++.. .... .++.+|+++. .|. .+.
T Consensus 138 ~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~~~-------~~~~~~~~v~lI~~~~----~~~~~~~l~~~~ 199 (412)
T 1w5s_A 138 HYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEEI-------PSRDGVNRIGFLLVAS----DVRALSYMREKI 199 (412)
T ss_dssp CEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHHS-------CCTTSCCBEEEEEEEE----ETHHHHHHHHHC
T ss_pred CeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHHhc-------ccCCCCceEEEEEEec----cccHHHHHhhhc
Confidence 3569999999999754110 112444555555421 1112 5677776653 121 233
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
|.+.+|+..++.|+||+.+++.+++... . ...+....+++++++.|+..+.
T Consensus 200 ~~~~~~~~~~i~l~~l~~~e~~~ll~~~----~-------~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 200 PQVESQIGFKLHLPAYKSRELYTILEQR----A-------ELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHH----H-------HHHBCTTSCCHHHHHHHHHHHC
T ss_pred chhhhhcCCeeeeCCCCHHHHHHHHHHH----H-------HhcCCCCCCChHHHHHHHHHHH
Confidence 6777888888999999999999999721 1 1111112467788877777665
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-08 Score=115.50 Aligned_cols=121 Identities=16% Similarity=0.135 Sum_probs=74.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCC----CC---CCCCch
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHL----AK---PSDLIP 1089 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~----~~---p~dl~p 1089 (1165)
..||+|||||+++... +|..||..||..+|+.- |..-..+..+||+.+=.. ++ -..|-+
T Consensus 300 dgGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~-G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~ 365 (506)
T 3f8t_A 300 DGGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVD-GIALNARCAVLAAINPGEQWPSDPPIARIDLDQ 365 (506)
T ss_dssp TTSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEET-TEEEECCCEEEEEECCCC--CCSCGGGGCCSCH
T ss_pred CCCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEEC-CEEcCCCeEEEEEeCcccccCCCCCccccCCCh
Confidence 6799999999999776 89999999998877653 431112345666643111 00 016778
Q ss_pred hhhccCCeEEEcCCCCHHHHH--HHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1090 ELQGRFPIRVELDSLSISDFT--RIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1090 el~gR~~i~v~l~~l~~~~l~--~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.+++||.+.+.+.+....+-. ..-.......++.|....+...++..+++++.++|+++...
T Consensus 366 alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~ 429 (506)
T 3f8t_A 366 DFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYET 429 (506)
T ss_dssp HHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHH
T ss_pred HHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHH
Confidence 999999887655444322111 00001113456677777664566779999999999876543
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-06 Score=118.49 Aligned_cols=89 Identities=26% Similarity=0.205 Sum_probs=57.1
Q ss_pred ceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--ceeecCceEEEEEeCCccc-CCCCCCchhhhCC
Q psy2392 420 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--YGIIKTDHILFIASGAFHL-AKPSDLIPELQGR 496 (1165)
Q Consensus 420 ~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--~~~~~t~~ilfI~~gaf~~-~~p~~l~pel~~R 496 (1165)
..|+|||||+.-.....+ .. .+...|.+++|.+....+ ...+.-.++.||||.+-.. .-...+.|.|++|
T Consensus 1375 ~~VlFiDDiNmp~~D~yG---tQ----~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~ 1447 (3245)
T 3vkg_A 1375 WLVVFCDEINLPSTDKYG---TQ----RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRH 1447 (3245)
T ss_dssp EEEEEETTTTCCCCCTTS---CC----HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred eEEEEecccCCCCccccc---cc----cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhh
Confidence 469999999975544332 11 134456677774333221 1122336778888843111 1124589999999
Q ss_pred CCeeEecCCCCHHHHHHHHh
Q psy2392 497 FPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~ 516 (1165)
|.+ +.+..++.+++.+|..
T Consensus 1448 F~v-i~i~~ps~esL~~If~ 1466 (3245)
T 3vkg_A 1448 API-LLVDFPSTSSLTQIYG 1466 (3245)
T ss_dssp CCE-EECCCCCHHHHHHHHH
T ss_pred ceE-EEeCCCCHHHHHHHHH
Confidence 998 6999999999999984
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.5e-06 Score=116.11 Aligned_cols=88 Identities=26% Similarity=0.221 Sum_probs=54.6
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee--eeeccCceEEEEecCCCCC-CCCCCCchhhhccC
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--YGIIKTDHILFIASGAFHL-AKPSDLIPELQGRF 1095 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k--~~~~~t~~ilfI~~gaf~~-~~p~dl~pel~gR~ 1095 (1165)
.|+|||||+.-.....| +. -+...|.+++|.....-+ ...+.-.++.||||-+=.. .--..+.|.|++||
T Consensus 1376 ~VlFiDDiNmp~~D~yG---tQ----~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1376 LVVFCDEINLPSTDKYG---TQ----RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp EEEEETTTTCCCCCTTS---CC----HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred EEEEecccCCCCccccc---cc----cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 39999999863332221 11 144566677774333221 1122336778888732000 01135889999999
Q ss_pred CeEEEcCCCCHHHHHHHHh
Q psy2392 1096 PIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~ 1114 (1165)
.+ +.++.++.+++.+|..
T Consensus 1449 ~v-i~i~~ps~esL~~If~ 1466 (3245)
T 3vkg_A 1449 PI-LLVDFPSTSSLTQIYG 1466 (3245)
T ss_dssp CE-EECCCCCHHHHHHHHH
T ss_pred eE-EEeCCCCHHHHHHHHH
Confidence 98 6899999999999976
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=9.6e-06 Score=92.36 Aligned_cols=131 Identities=16% Similarity=0.135 Sum_probs=92.3
Q ss_pred cceEEEEecchh-hhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcc-cCCCCCCchhhhCC
Q psy2392 419 QNGIIFLDEIDK-ITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-LAKPSDLIPELQGR 496 (1165)
Q Consensus 419 ~~~IifiDEidk-i~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~-~~~p~~l~pel~~R 496 (1165)
.+.||+|||+|. +.+. .++.|++.+|.. ..+.+++++++... ..+...+.|.+.+|
T Consensus 76 ~~kvvii~~~~~kl~~~-------------~~~aLl~~le~p---------~~~~~~il~~~~~~~~~~~~k~~~~i~sr 133 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAA-------------INEQLLTLTGLL---------HDDLLLIVRGNKLSKAQENAAWFTALANR 133 (343)
T ss_dssp SCEEEEEECCSSCCCTT-------------HHHHHHHHHTTC---------BTTEEEEEEESCCCTTTTTSHHHHHHTTT
T ss_pred CCeEEEEECCCCCCChH-------------HHHHHHHHHhcC---------CCCeEEEEEcCCCChhhHhhHHHHHHHhC
Confidence 467999999998 7543 566899999852 22334444443221 11234588999999
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
+. ++.|.+++.+++.+.+. +.+..+|+ .+++++++.|++.+ +++.|.+.+.++++..
T Consensus 134 ~~-~~~~~~l~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~--------~gdl~~~~~elekl~l- 190 (343)
T 1jr3_D 134 SV-QVTCQTPEQAQLPRWVA-----------ARAKQLNL--ELDDAANQVLCYCY--------EGNLLALAQALERLSL- 190 (343)
T ss_dssp CE-EEEECCCCTTHHHHHHH-----------HHHHHTTC--EECHHHHHHHHHSS--------TTCHHHHHHHHHHHHH-
T ss_pred ce-EEEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh--------chHHHHHHHHHHHHHH-
Confidence 86 57999999999888773 33455666 78899999999866 5788999999999864
Q ss_pred hhcccCCCeeEEccccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGD 599 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~ 599 (1165)
+ .++. .||.+.|++.+..
T Consensus 191 --~-~~~~--~It~e~V~~~~~~ 208 (343)
T 1jr3_D 191 --L-WPDG--KLTLPRVEQAVND 208 (343)
T ss_dssp --H-CTTC--EECHHHHHHHHHH
T ss_pred --h-cCCC--CCCHHHHHHHHhh
Confidence 2 1222 5888888776654
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.8e-05 Score=85.57 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=42.6
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
..++|.+..++.+..++... ..++++||+|+|||+|++.+++..+ .+.+++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----------------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----------------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----------------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----------------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 36789998888888876531 5899999999999999999999875 56666543
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=89.78 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=42.4
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
..++|.++.++.|...+... +.++++||+|+|||++++.+++..+ .+.+++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----------------~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----------------PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----------------SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----------------CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeec
Confidence 46789998888888776521 5799999999999999999999875 56666643
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3.4e-05 Score=87.76 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=69.3
Q ss_pred CCeeeehhhhh-hhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCC-CCCCCCCchhhhccC
Q psy2392 1018 NGIIFLDEIDK-ITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH-LAKPSDLIPELQGRF 1095 (1165)
Q Consensus 1018 ~gIvfiDEiDk-i~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~-~~~p~dl~pel~gR~ 1095 (1165)
.-||+|||+|+ +... .|+.|++.+|... .+.+++++++... .++...+.|.+.+|+
T Consensus 77 ~kvvii~~~~~kl~~~-------------~~~aLl~~le~p~---------~~~~~il~~~~~~~~~~~~k~~~~i~sr~ 134 (343)
T 1jr3_D 77 RQTLLLLLPENGPNAA-------------INEQLLTLTGLLH---------DDLLLIVRGNKLSKAQENAAWFTALANRS 134 (343)
T ss_dssp CEEEEEECCSSCCCTT-------------HHHHHHHHHTTCB---------TTEEEEEEESCCCTTTTTSHHHHHHTTTC
T ss_pred CeEEEEECCCCCCChH-------------HHHHHHHHHhcCC---------CCeEEEEEcCCCChhhHhhHHHHHHHhCc
Confidence 45999999998 7543 7889999999522 2233344443321 122456889999998
Q ss_pred CeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHH
Q psy2392 1096 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIA 1149 (1165)
Q Consensus 1096 ~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a 1149 (1165)
.+ ++|.+++.+++.+.++ ..++.+|+ .++++|++.|++.+
T Consensus 135 ~~-~~~~~l~~~~l~~~l~-----------~~~~~~g~--~i~~~a~~~l~~~~ 174 (343)
T 1jr3_D 135 VQ-VTCQTPEQAQLPRWVA-----------ARAKQLNL--ELDDAANQVLCYCY 174 (343)
T ss_dssp EE-EEECCCCTTHHHHHHH-----------HHHHHTTC--EECHHHHHHHHHSS
T ss_pred eE-EEeeCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHh
Confidence 64 7999999999988777 44566787 78899999998764
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00018 Score=80.99 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=42.4
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
..++|.+..++.+.. +.. ..++++||+|+|||+|++.+++.++..++.+++..+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHhcChHHHHHHHHH-hcC-----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 367888877776665 310 489999999999999999999998777777887653
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.5e-05 Score=80.37 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
..++|+||+|+|||+|+++++..+ |...+.+++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 689999999999999999999988 44445555443
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00045 Score=77.69 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=42.5
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
..++|.++.++.|.. +.. +.++++||+|+|||++++.+++.++..++.+++..+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~ 66 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKF 66 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHhcChHHHHHHHHH-hcC-----------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhh
Confidence 467788877777665 320 378999999999999999999998777778887653
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=97.68 E-value=4.1e-05 Score=84.50 Aligned_cols=69 Identities=16% Similarity=0.203 Sum_probs=43.1
Q ss_pred hhhhccccccCcccee--eee-eccCceEEEEecCCCCCCC------CC-CCchhhhccCCeEEEcC--------CCCHH
Q psy2392 1046 VQRDLLPLVEGTTVNT--KYG-IIKTDHILFIASGAFHLAK------PS-DLIPELQGRFPIRVELD--------SLSIS 1107 (1165)
Q Consensus 1046 vq~~lL~~~Eg~~v~~--k~~-~~~t~~ilfI~~gaf~~~~------p~-dl~pel~gR~~i~v~l~--------~l~~~ 1107 (1165)
.|..+-.+++|..+.. |+. ...+.+..+|.+.+..... +| +..+.|++|+-+ +.|. +|+.+
T Consensus 163 ~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~~~-f~F~~~~p~~~~~lt~~ 241 (267)
T 1u0j_A 163 VVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFK-FELTRRLDHDFGKVTKQ 241 (267)
T ss_dssp THHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEE-EECCSCCCTTSCCCCHH
T ss_pred HHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhEEE-EECCCcCCcccCCCCHH
Confidence 4445666778766654 332 3344444445554433222 33 677899999876 5898 89999
Q ss_pred HHHHHHhh
Q psy2392 1108 DFTRIMTS 1115 (1165)
Q Consensus 1108 ~l~~il~~ 1115 (1165)
+....|++
T Consensus 242 ~~~~f~~w 249 (267)
T 1u0j_A 242 EVKDFFRW 249 (267)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888873
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=4.2e-05 Score=78.67 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh----CCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l----~~~~i~ld~ 251 (1165)
...++|+||||||||+|+++++..+ +...+.+++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 3689999999999999999999987 444444443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.63 E-value=4.8e-05 Score=76.63 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
..++|+||+|+|||+|+++++..+ +...+.+++.+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 679999999999999999999988 44455555544
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00014 Score=80.26 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.+++|+||||||||++|++||..++
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5899999999999999999999864
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00025 Score=95.34 Aligned_cols=73 Identities=14% Similarity=0.093 Sum_probs=44.2
Q ss_pred hhhcccchHHHHHHHHHHHHhHhhhh---------c-ccCC--------C---------CCCCCCceEEEEccCCCChhH
Q psy2392 779 LDKYVIGQNRAKRAVAIALRNRWRRQ---------Q-ITGP--------L---------QQEITPKNILMIGPTGVGKTE 831 (1165)
Q Consensus 779 L~~~IvGQ~~ak~~l~~~i~~~~~r~---------~-l~~~--------~---------~~~~~~~~iLL~GPpG~GKT~ 831 (1165)
=|.+|.|.++++..+.+++.++++.. + .... . ...+..+.+|+|||||||||+
T Consensus 1018 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~ 1097 (1706)
T 3cmw_A 1018 STGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTT 1097 (1706)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHH
T ss_pred eeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHH
Confidence 34789999999988888887765320 0 0000 0 001112459999999999999
Q ss_pred HHHHHHHHc---CCCeEEEecCC
Q psy2392 832 IARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 832 lAk~lA~~l---~~~fi~l~~se 851 (1165)
+|++++.+. +.|-+.++..+
T Consensus 1098 la~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1098 LTLQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTS
T ss_pred HHHHHHHHhhhcCCceeEEEccc
Confidence 999999877 45555555544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=72.39 Aligned_cols=25 Identities=36% Similarity=0.512 Sum_probs=23.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+++|+||||||||++++++++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999999887
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00047 Score=71.88 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=29.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
.+++|+||||||||++|+++++.+ +.+++.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 789999999999999999999988 45666665543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0012 Score=88.72 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=44.0
Q ss_pred ccEecchhhHHHHHHHHHhhhhh----------hcccCC---------------C--CCccCCcEEEEEcCCCCCchHHH
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRR----------QQITGP---------------L--QQEITPKNILMIGPTGVGKTEIA 235 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r----------~~l~~~---------------~--~~~~~~~~~Ll~GPpG~GKT~lA 235 (1165)
.+|.|.+.++..+.+++.+++.+ ...+.. + +-.++...+|++||||||||++|
T Consensus 1020 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la 1099 (1706)
T 3cmw_A 1020 GSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLT 1099 (1706)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHH
T ss_pred eecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHH
Confidence 47888999998888888766533 001100 0 11112346999999999999999
Q ss_pred HHHHHHh---CCCceEEeccc
Q psy2392 236 RRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 236 k~lA~~l---~~~~i~ld~s~ 253 (1165)
++++.+. +.|-+-++..+
T Consensus 1100 ~~~~~~~~~~g~~~~fi~~~~ 1120 (1706)
T 3cmw_A 1100 LQVIAAAQREGKTCAFIDAEH 1120 (1706)
T ss_dssp HHHHHHHHHTTCCEEEECTTS
T ss_pred HHHHHHhhhcCCceeEEEccc
Confidence 9999877 45545555433
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00051 Score=69.92 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
+..++++||||+||||+|+.|++.++.+++.++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 367999999999999999999999998888766543
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00037 Score=71.52 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+..++|+|||||||||+|+.||+.++.+++..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 368999999999999999999999988877554
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00039 Score=71.42 Aligned_cols=33 Identities=36% Similarity=0.562 Sum_probs=29.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
+..++|+|||||||||+++.||+.++.+|+..|
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 468999999999999999999999998877543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00064 Score=69.19 Aligned_cols=36 Identities=22% Similarity=0.447 Sum_probs=31.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
+..++|.||||+||||+++.|++.++.+|+.++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~ 38 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDS 38 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccch
Confidence 357899999999999999999999998888876543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0012 Score=74.66 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC--ceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~--~i~l 249 (1165)
..++++||||||||+||.++|...+.+ |+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 567999999999999999999875433 4444
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00072 Score=70.50 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
.+++|+||||||||++|++++..+ +.+++.+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 92 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE 92 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence 799999999999999999999988 45555555543
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00072 Score=70.71 Aligned_cols=32 Identities=34% Similarity=0.681 Sum_probs=28.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
..++|+|||||||||+++.||+.++.+++..|
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 68999999999999999999999988876554
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00075 Score=70.56 Aligned_cols=33 Identities=33% Similarity=0.637 Sum_probs=28.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
...++|+|||||||||+++.||+.++.+|+..|
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 368999999999999999999999998876543
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00099 Score=69.53 Aligned_cols=33 Identities=33% Similarity=0.549 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.+..++|+|||||||||+|+.|++.++.+++..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 346899999999999999999999998765543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=66.63 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.|||||||||+++.|++.++.+++..|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 6899999999999999999999987765444
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=68.98 Aligned_cols=31 Identities=35% Similarity=0.575 Sum_probs=27.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+|+.|++.++.+++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 4679999999999999999999999877654
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00093 Score=68.54 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
..++|+|+|||||||+|+.||+.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 46899999999999999999999998766544
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=73.74 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=28.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC----CCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~----~~fi~l~~s 850 (1165)
..+++|+||||||||+||.++++.+. .+++.++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 37899999999999999999998764 555555554
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0013 Score=66.28 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=26.9
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.|||||||||+++.|++.++.+|+..|
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998775433
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.001 Score=68.18 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=27.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
..++|.|+|||||||+|+.|++.++.+++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 45899999999999999999999998876533
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=66.89 Aligned_cols=32 Identities=22% Similarity=0.461 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.+++|.|+|||||||+|+.||+.++.+++..|
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 58999999999999999999999998876544
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=67.96 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4689999999999999999999999876554
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0011 Score=67.98 Aligned_cols=32 Identities=41% Similarity=0.674 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
+..++|+||||||||++++.|++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 36899999999999999999999997665543
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00098 Score=67.98 Aligned_cols=29 Identities=45% Similarity=0.650 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
.++|.|||||||||+|+.||+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68999999999999999999999876654
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.001 Score=67.84 Aligned_cols=30 Identities=47% Similarity=0.664 Sum_probs=26.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..++|.|||||||||+|+.||+.++.+|+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 368999999999999999999999987654
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0013 Score=66.59 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=27.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+++|.|+|||||||+++.||+.++.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id 37 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLD 37 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 3689999999999999999999999988765
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0014 Score=67.38 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 4678999999999999999999999877654
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0012 Score=67.57 Aligned_cols=32 Identities=41% Similarity=0.674 Sum_probs=27.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+..++|+|||||||||+++.|++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 36799999999999999999999998766543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=66.77 Aligned_cols=29 Identities=45% Similarity=0.847 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..+.|+|||||||||+++.||+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 57999999999999999999999976443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0013 Score=67.93 Aligned_cols=32 Identities=31% Similarity=0.489 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHH-hCCCceEE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKL-SNAPFIKI 249 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~-l~~~~i~l 249 (1165)
+..++|+|||||||||+++.||+. ++.+++..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 468999999999999999999999 66555433
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0018 Score=72.93 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC----CCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~----~~~i~ld~s 252 (1165)
..+++|+||||||||+||.++|..+. .+++.++++
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 37999999999999999999998764 444545543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0014 Score=66.24 Aligned_cols=29 Identities=45% Similarity=0.847 Sum_probs=25.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.|+|||||||||+++.||+.++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 56899999999999999999999987544
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0036 Score=70.79 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=24.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCC--CeEEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNA--PFIKI 847 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~--~fi~l 847 (1165)
..++++||||||||+||..++...+. .|+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 56799999999999999999986433 35555
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0015 Score=67.46 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=26.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHH-cCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKL-SNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~-l~~~fi~ 846 (1165)
+..++|+|||||||||+++.|++. ++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 468999999999999999999999 6765543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0015 Score=67.03 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
|..++|.|+|||||||+|+.|++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 468999999999999999999999976543
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0016 Score=67.06 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 3689999999999999999999999765443
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=67.10 Aligned_cols=32 Identities=31% Similarity=0.656 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
+..++|+||||+||||+|+.|++.++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 46899999999999999999999997655543
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0044 Score=67.41 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
.|..++|+|||||||||+|+.|++.++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 35789999999999999999999999866777777655
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0019 Score=66.54 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=27.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+|+.|++.++.+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 3679999999999999999999999876543
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=66.36 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=26.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|+|||||||+|+.|++.++.+++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i 32 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL 32 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 467899999999999999999999987554
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0023 Score=69.93 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
.++++|||||||||+|+.||+.++.+++..|..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 578999999999999999999999887776653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0016 Score=66.75 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..++|+|||||||||+++.||+.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 57999999999999999999999975443
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=65.13 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|.|+|||||||+|+.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 468999999999999999999999988766
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0018 Score=65.37 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..++|+|+|||||||+|+.|++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4689999999999999999999998765543
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0021 Score=68.11 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 3689999999999999999999999865543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0021 Score=66.05 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=31.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
...+.|+|||||||||++++|+..++.+.+.++..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3578899999999999999999988777788876554
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0025 Score=69.52 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=28.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
.++++|||||||||+|+.||+.++.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999988877665
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0021 Score=64.35 Aligned_cols=29 Identities=45% Similarity=0.557 Sum_probs=24.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..++|.|||||||||+|+.| +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 35889999999999999999 888876554
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0026 Score=64.82 Aligned_cols=30 Identities=37% Similarity=0.524 Sum_probs=23.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|+|||||||+|+.|++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 467899999999999999999999998766
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0021 Score=64.38 Aligned_cols=29 Identities=45% Similarity=0.557 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
..++|+|||||||||+|+.| +.++.+++.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 36899999999999999999 888766543
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0022 Score=68.03 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.+++|+||||||||++|.++|+.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999984
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0023 Score=67.80 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=27.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4679999999999999999999999876544
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=64.07 Aligned_cols=31 Identities=29% Similarity=0.533 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.|+|||||||+|+.|++.++.+++..|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d 32 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVD 32 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5899999999999999999999987765443
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0029 Score=65.87 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4678999999999999999999999875543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0025 Score=66.50 Aligned_cols=31 Identities=32% Similarity=0.725 Sum_probs=27.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.||||+||||+|+.|++.++.+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 3579999999999999999999999876554
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0055 Score=66.69 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=32.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~ 853 (1165)
+..++|.|||||||||+|+.|++.++.+++.++...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r 69 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR 69 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence 57899999999999999999999998667777776653
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0028 Score=66.06 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 4679999999999999999999999764443
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.002 Score=66.22 Aligned_cols=37 Identities=30% Similarity=0.522 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+..+.|+|||||||||++++|+..++...+.++..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3678999999999999999999987767777765543
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0021 Score=64.85 Aligned_cols=30 Identities=33% Similarity=0.638 Sum_probs=26.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..++|.|+|||||||+|+.|++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999876654
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0032 Score=67.46 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
++.++|.||||+||+|.|+.|++.++.+.+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 467888999999999999999999986443
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0015 Score=66.21 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHH-HhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAK-LSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~-~l~ 243 (1165)
|..++|.|||||||||+|+.|++ .++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 35789999999999999999998 343
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0023 Score=66.11 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 368999999999999999999999974433
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0023 Score=65.45 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 357999999999999999999999975444
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.002 Score=65.88 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..++|.|||||||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999886
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0028 Score=66.69 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.++|.|||||||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 578999999999999999999997655433
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0027 Score=66.87 Aligned_cols=30 Identities=27% Similarity=0.532 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.++|+|||||||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 588999999999999999999997654433
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0026 Score=65.70 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=26.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i 41 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHL 41 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 357999999999999999999999986443
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0031 Score=64.54 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=25.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..++|.|||||||||+++.|++.++.+++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 56899999999999999999999986543
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0027 Score=67.43 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=23.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
.++||+||||||||++|.++|+.+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999999853
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0023 Score=68.22 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 3689999999999999999999999765443
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.012 Score=62.16 Aligned_cols=66 Identities=14% Similarity=0.158 Sum_probs=38.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||+|||++.+.+.+.. ..+ .. .+|..++-.. ...+-+|..| ..|+.+...|+.|+.
T Consensus 87 ~~~vliIDEAq~l~~~~~~--~~e-----~~-rll~~l~~~r---------~~~~~iil~t----q~~~~l~~~lr~ri~ 145 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSA--GSK-----IP-ENVQWLNTHR---------HQGIDIFVLT----QGPKLLDQNLRTLVR 145 (199)
T ss_dssp TTCEEEETTGGGTSBCCCT--TCC-----CC-HHHHGGGGTT---------TTTCEEEEEE----SCGGGBCHHHHTTEE
T ss_pred CceEEEEEChhhhccCccc--cch-----hH-HHHHHHHhcC---------cCCeEEEEEC----CCHHHHhHHHHHHhh
Confidence 4789999999999654321 011 11 2344343211 1112233343 236778889999999
Q ss_pred eeEecCC
Q psy2392 499 IRVELDS 505 (1165)
Q Consensus 499 ~~v~~~~ 505 (1165)
..+.|.+
T Consensus 146 ~~~~l~~ 152 (199)
T 2r2a_A 146 KHYHIAS 152 (199)
T ss_dssp EEEEEEE
T ss_pred eEEEEcC
Confidence 9988876
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0031 Score=67.60 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++.++|.|||||||+|.|+.||+.++.+ +++.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIst 60 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSS 60 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCE--EECH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcH
Confidence 4678899999999999999999999654 4444
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.05 E-value=0.002 Score=68.33 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=26.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|.|||||||||+++.||+.++.+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 368999999999999999999999975443
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0027 Score=65.00 Aligned_cols=30 Identities=17% Similarity=0.332 Sum_probs=26.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i 35 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHL 35 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 467899999999999999999999986544
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0033 Score=63.81 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
..++|+||||+||||+++.|+..+|.. .++..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~--~i~~d~ 41 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAA--FLDGDF 41 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCE--EEEGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcE--EEeCcc
Confidence 578999999999999999999998754 444433
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.003 Score=63.59 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=26.2
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|+|||||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999987664
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0046 Score=68.83 Aligned_cols=38 Identities=26% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
.+..++|.|||||||||+|+.|++.++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 35789999999999999999999998656677775433
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0027 Score=67.62 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=26.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+++.|++.++.+++.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 3679999999999999999999999875543
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0037 Score=66.31 Aligned_cols=28 Identities=39% Similarity=0.605 Sum_probs=24.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.++|.||||+||+|.|+.||+.++.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 4788999999999999999999987543
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0029 Score=64.08 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.5
Q ss_pred CceEEEEccCCCChhHHHHHHHH-HcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAK-LSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~-~l~ 841 (1165)
|..++|.||||+||||+|+.|++ .++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~ 28 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG 28 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC
Confidence 35689999999999999999998 344
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.003 Score=67.68 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3689999999999999999999999865443
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0025 Score=65.28 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=23.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..++|.|||||||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999886
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0032 Score=66.27 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=25.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|||||||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47899999999999999999999876543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0039 Score=63.32 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=28.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
...++|+||||+||||+++.|++.++..+ ++...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 35789999999999999999999987644 454443
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0033 Score=67.44 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=27.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|||||||||+|+.||+.++.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 46 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLA 46 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3679999999999999999999999876544
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0034 Score=66.02 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=25.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|||||||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 30 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIS 30 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEee
Confidence 47899999999999999999999876553
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0038 Score=66.29 Aligned_cols=30 Identities=37% Similarity=0.582 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
.++|.||||+||+|.|+.||+.++.+ +++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~--~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV--HIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE--EEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe--EEcH
Confidence 57899999999999999999999654 4554
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0032 Score=68.25 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
|..++|+|||||||||+|+.|++.++.+++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 468999999999999999999999965444
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0023 Score=67.86 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=26.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|||||||||+++.||+.++.+++
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 467999999999999999999999986443
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0059 Score=68.00 Aligned_cols=37 Identities=27% Similarity=0.481 Sum_probs=30.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+..++|.|||||||||+|+.|++.++..++.+++..+
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 5788999999999999999999998655677776444
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0033 Score=66.67 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=26.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..++|.|||||||||+|+.||+.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5799999999999999999999998655543
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0098 Score=62.77 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=38.7
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...||+|||++.+...... + .| ..+ +|.-++-. ....+-+|..|. .|+.+...|.+|+.
T Consensus 87 ~~~vliIDEAq~l~~~~~~--~----~e-~~r-ll~~l~~~---------r~~~~~iil~tq----~~~~l~~~lr~ri~ 145 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSA--G----SK-IPE-NVQWLNTH---------RHQGIDIFVLTQ----GPKLLDQNLRTLVR 145 (199)
T ss_dssp TTCEEEETTGGGTSBCCCT--T----CC-CCH-HHHGGGGT---------TTTTCEEEEEES----CGGGBCHHHHTTEE
T ss_pred CceEEEEEChhhhccCccc--c----ch-hHH-HHHHHHhc---------CcCCeEEEEECC----CHHHHhHHHHHHhh
Confidence 3679999999999654211 0 01 112 33333311 111223344443 36778889999999
Q ss_pred eEEEcCC
Q psy2392 1097 IRVELDS 1103 (1165)
Q Consensus 1097 i~v~l~~ 1103 (1165)
..+.|.+
T Consensus 146 ~~~~l~~ 152 (199)
T 2r2a_A 146 KHYHIAS 152 (199)
T ss_dssp EEEEEEE
T ss_pred eEEEEcC
Confidence 9999887
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0036 Score=66.35 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=26.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..++|.|||||||||+|+.||+.++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 35 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLS 35 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEe
Confidence 578999999999999999999999876554
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0039 Score=67.53 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=26.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++|.|||||||||+|+.|++.++.+++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~i 58 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHL 58 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 468999999999999999999999976544
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0041 Score=65.61 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=25.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.++|.|||||||||+|+.|++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 589999999999999999999997655443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0047 Score=64.47 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+..+.|+||+||||||+++.|++.+|. +.++...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 368999999999999999999999964 44555443
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0071 Score=61.74 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
..+.|+|++||||||+++.|++.+ |.+++.++...+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 578999999999999999999998 888888875443
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0046 Score=65.23 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=25.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|||||||||+|+.|++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~ 30 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 47899999999999999999999876554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0083 Score=61.22 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
...+.|.|++||||||+++.|++.+ +.+++.+|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 3578899999999999999999998 88888887543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.0066 Score=63.39 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=28.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+..+.|.||+||||||+++.|++.+|. +.++...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 367899999999999999999999975 45555544
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0058 Score=69.23 Aligned_cols=37 Identities=32% Similarity=0.617 Sum_probs=32.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+..++++||||||||++|+.||+.++.+++.+|.-.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qv 41 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALI 41 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhh
Confidence 3578999999999999999999999988888876543
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.005 Score=69.74 Aligned_cols=36 Identities=33% Similarity=0.624 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
+..++++||||||||++|+.||+.++..++.+|.-.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 357999999999999999999999998888777644
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0066 Score=69.53 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=27.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.+++|+|||||||||++++||+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 579999999999999999999999888754
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0054 Score=62.68 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=25.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCC---CceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNA---PFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~---~~i~ld~ 251 (1165)
.++|.|||||||||+|+.|++.++. ++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 5899999999999999999999852 3444443
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0047 Score=64.48 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+..++|.|+|||||||+++.|++.++.+++.++
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 468999999999999999999999876666554
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0077 Score=61.66 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---CCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld 250 (1165)
.+.|.|+|||||||+++.|++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 77777665
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.009 Score=62.34 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=29.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
+..+.|.||+||||||++++|+..+ |...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3688999999999999999999998 444346665444
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0066 Score=64.15 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
..+.|+|||||||||+++.|++.++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~ 33 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHL 33 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 5799999999999999999999997543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0071 Score=63.91 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.|.|||||||||+++.|++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 57899999999999999999999986544
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0091 Score=61.14 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=27.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHc---CCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~ 848 (1165)
.+.|.|+|||||||+++.|++.+ +.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88887765
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0059 Score=66.75 Aligned_cols=32 Identities=22% Similarity=0.515 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
..+.|+||+||||||+++.||+.++.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 68999999999999999999999987666544
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.01 Score=64.83 Aligned_cols=38 Identities=29% Similarity=0.461 Sum_probs=31.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHH---cCCCeEEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKL---SNAPFIKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~---l~~~fi~l~~se~~ 853 (1165)
+..++|.|+|||||||+|+.|++. .+.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 367899999999999999999998 67777766654443
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0056 Score=69.68 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
..+++.||||||||+|+..||+.++.+++..|.-.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qv 76 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQV 76 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccccc
Confidence 579999999999999999999999888887776543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.008 Score=62.08 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=25.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.+.|.|+|||||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999987654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0071 Score=62.47 Aligned_cols=28 Identities=25% Similarity=0.468 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
.+.|.|+|||||||+++.|++.++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 5789999999999999999999987554
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0097 Score=65.01 Aligned_cols=37 Identities=30% Similarity=0.476 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHH---hCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKL---SNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~---l~~~~i~ld~s~~ 254 (1165)
+..++|+|+|||||||+|+.|++. .|.+++.++...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 358999999999999999999998 5677765565433
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.012 Score=61.25 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=29.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
+..+.|.||+||||||++++|+..+ |...+.++...+
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 3678899999999999999999998 544346665444
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0056 Score=63.78 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.+.++||+||||||+++.|++ +|.+++..|
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 688999999999999999999 875554443
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0069 Score=68.95 Aligned_cols=35 Identities=26% Similarity=0.420 Sum_probs=30.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
..++++||||||||+|+..||+.++.+++..|.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 57899999999999999999999998887776653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=64.08 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..+.|+|||||||||+++.|++.++...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 468999999999999999999999976443
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0062 Score=63.63 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+..++|.|+|||||||+++.|++.++..++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~ 41 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAE 41 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 468999999999999999999999865555443
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0064 Score=63.30 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=24.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.+.+.||+||||||+++.|++ ++.+++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 588999999999999999999 8765544
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0065 Score=64.72 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
.++|.|||||||||+|+.|++.++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~ 28 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAH 28 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 578999999999999999999997543
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0087 Score=62.14 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.+.+.||+||||||+++.||+.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 789999999999999999999998665543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.01 Score=66.68 Aligned_cols=37 Identities=35% Similarity=0.649 Sum_probs=31.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
+.-+++.||||||||+||..||+.++.+++..|.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4678899999999999999999999887777776554
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.011 Score=67.85 Aligned_cols=31 Identities=26% Similarity=0.577 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.+++|+||||||||+++++||+.++.+|+.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l 55 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHTF 55 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeeee
Confidence 5799999999999999999999998888553
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0078 Score=65.78 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=27.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
..+.|+||+||||||+++.||+.++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5799999999999999999999999866553
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0066 Score=64.68 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=24.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.++|.|||||||||+++.|++.++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i 29 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHI 29 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 4789999999999999999999986443
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.008 Score=62.29 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh-CCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i~ld 250 (1165)
+..+.|.|||||||||+++.|++.+ +.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3679999999999999999999998 45665543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0073 Score=62.44 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..+.+.|++||||||+++.|++. |.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 468999999999999999999997 655443
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0062 Score=62.21 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=22.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHcC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.++|.|||||||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999885
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=61.54 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=28.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc-CCCeEEEe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS-NAPFIKIE 848 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~ 848 (1165)
+..+.|.|||||||||+++.|++.+ +.+++.++
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3578999999999999999999998 56676654
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0094 Score=67.06 Aligned_cols=37 Identities=35% Similarity=0.649 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
+.-+++.||||||||+||..||+.++..++..|.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4578999999999999999999999888777776554
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0063 Score=63.50 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=27.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+..++|.|+|||||||+++.|++.++.+++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 46789999999999999999999987655444
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=95.22 E-value=0.012 Score=63.51 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=25.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+..++|.|||||||||+++.|++.++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 46799999999999999999999998643
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0076 Score=62.92 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
..+.|+||+||||||+++.|++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3688999999999999999998 7766553
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.01 Score=61.61 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=26.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.+.+.||+||||||+++.|++.++.+++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 68899999999999999999999976654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=61.35 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
..++|.|||||||||+|+.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999999764
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.011 Score=64.09 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
+..+.+.|||||||||+++.||+.++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 46899999999999999999999997543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0084 Score=62.57 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+.|.||+||||||+++.+++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999998 7776653
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0095 Score=61.59 Aligned_cols=30 Identities=30% Similarity=0.454 Sum_probs=25.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..+.+.|++||||||+++.|++. +.+++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 467999999999999999999998 765543
|
| >1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.09 E-value=0.057 Score=50.09 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCC-
Q psy2392 505 SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNN- 583 (1165)
Q Consensus 505 ~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~- 583 (1165)
.++.++-..|.+ +.|+..+.+......-++.|+++|+..|++.... ..|.|.|.+.|++++..+....-.
T Consensus 2 GYt~~EK~~IAk---~~LiPkql~~~GL~~~~~~i~d~al~~iI~~YTR------EaGVRnLer~i~~i~RK~a~~i~~~ 72 (94)
T 1qzm_A 2 GYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR------EAGVRGLEREISKLCRKAVKQLLLD 72 (94)
T ss_dssp CCCHHHHHHHHH---HTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCC------CSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHH---HhccHHHHHHhCCChhhceECHHHHHHHHHHhcc------cccchHHHHHHHHHHHHHHHHHHHc
Confidence 468888889986 6677666555555555799999999999987654 789999999999888777665432
Q ss_pred ---CeeEEccccccccccc
Q psy2392 584 ---ISLLVDADYVNSRLGD 599 (1165)
Q Consensus 584 ---~~~~i~~~~v~~~~~~ 599 (1165)
..++||.+.+.+.|+.
T Consensus 73 ~~~~~v~v~~~~l~~~LG~ 91 (94)
T 1qzm_A 73 KSLKHIEINGDNLHDYLGV 91 (94)
T ss_dssp TTCCCEEECTTTTHHHHCS
T ss_pred CCCCCeeECHHHHHHHcCC
Confidence 2388999988888774
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.019 Score=59.66 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=24.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
..++|.|||||||||+++.|++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 578999999999999999999998763
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.013 Score=63.29 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=25.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+..+.+.|||||||||+++.|++.++.++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~ 37 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARY 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45799999999999999999999998654
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.014 Score=63.18 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce--------EEeccccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI--------KIEATKFT 255 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i--------~ld~s~~~ 255 (1165)
+..+.+.|||||||||+|+.|++.++.+++ .+++.+|.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 467999999999999999999999987642 57776653
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.0083 Score=62.65 Aligned_cols=31 Identities=23% Similarity=0.225 Sum_probs=25.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..++|.|+|||||||+++.|++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~ 39 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHR 39 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCc
Confidence 4678999999999999999999988644433
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=66.28 Aligned_cols=36 Identities=36% Similarity=0.484 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
.-+++.||||||||+||..||+.++..++..|.-.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Qv 39 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQV 39 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcccc
Confidence 578899999999999999999999877666665543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.023 Score=58.24 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC---CCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~---~~~i~ld~ 251 (1165)
+..++|+|+|||||||+++.|++.++ .++..++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 46889999999999999999999983 33444543
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.012 Score=61.65 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..+.++|++||||||+++.|++.+|.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 4688999999999999999999988655443
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.017 Score=62.69 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=31.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe--------EEEecCCcc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF--------IKIEATKFT 853 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f--------i~l~~se~~ 853 (1165)
+..+.+.|||||||||+|+.|++.++.++ ..+++.++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 46789999999999999999999998763 357776654
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=94.74 E-value=0.015 Score=65.56 Aligned_cols=35 Identities=37% Similarity=0.497 Sum_probs=29.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
.-+++.||||||||+||..||+.++..++..|.-.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 56888999999999999999999987666666543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=60.93 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..++|+|||||||||+++.|++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 36789999999999999999999884
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.013 Score=61.67 Aligned_cols=31 Identities=32% Similarity=0.537 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..+.++||+|||||++++.|++.+|.+++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 3578999999999999999999999865543
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.68 E-value=0.014 Score=61.15 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=26.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+.++|++||||||+++.+++.+|.+++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 567889999999999999999998876554
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.014 Score=61.54 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
..+.|.|++||||||+++.|++ +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5789999999999999999998 77654443
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.021 Score=62.06 Aligned_cols=29 Identities=31% Similarity=0.479 Sum_probs=25.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.+.||+||||||+++.|++.++.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 57889999999999999999999987543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.57 E-value=0.018 Score=59.54 Aligned_cols=24 Identities=29% Similarity=0.645 Sum_probs=22.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.+.|+||+|||||||.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999986
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.012 Score=61.43 Aligned_cols=29 Identities=38% Similarity=0.382 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh-CCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS-NAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l-~~~~i 247 (1165)
..+.++|||||||||+++.|++.+ +.+++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 578899999999999999999987 44333
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.021 Score=62.13 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
..+.+.||+||||||+++.||+.+|.++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~ 55 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRL 55 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCc
Confidence 5789999999999999999999997543
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.016 Score=61.02 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=26.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+.+.||+|||||++++.|++.++.+++.
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 568999999999999999999999876543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=94.52 E-value=0.018 Score=60.13 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..++|+|||||||||+++.|++.++
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 36789999999999999999999885
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=60.93 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
..+.|.|++||||||+++.|++ ++.+++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 5789999999999999999998 7765544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.47 E-value=0.021 Score=58.64 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.|+||||||||||++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999999874
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.013 Score=64.93 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
|..++|.|||||||||+|+.|++.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999999964
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.038 Score=75.50 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=28.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
+.+++|+||||||||+||.+++... +.....+++.+.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 5799999999999999999998776 444555555543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.023 Score=58.29 Aligned_cols=25 Identities=28% Similarity=0.585 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.-+.|+||+|||||||++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999999874
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.015 Score=60.71 Aligned_cols=34 Identities=35% Similarity=0.382 Sum_probs=26.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc-CCCeEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS-NAPFIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi~l~~se~ 852 (1165)
..+.+.|||||||||+++.|++.+ +.+ .++...+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~--~i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCS--VISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEE--EEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcE--EEeCCcc
Confidence 567899999999999999999987 443 4444443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.40 E-value=0.02 Score=59.10 Aligned_cols=26 Identities=27% Similarity=0.579 Sum_probs=23.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
.+.|+||+|||||||.+.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999999743
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.034 Score=56.97 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=27.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC---CCeEEEec
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEA 849 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~ 849 (1165)
+..++|.|+|||||||+++.|++.++ .++..++.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 46789999999999999999999884 33455554
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.02 Score=61.31 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..+.|.||+||||||+++.|++.+|.+++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 368999999999999999999999985543
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.31 E-value=0.014 Score=64.51 Aligned_cols=29 Identities=38% Similarity=0.385 Sum_probs=24.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc-CCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS-NAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l-~~~fi 845 (1165)
..++|.|||||||||+|+.|++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 568999999999999999999974 54333
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.02 Score=59.25 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..+.|+|||||||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3578999999999999999999987
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.21 E-value=0.021 Score=65.14 Aligned_cols=33 Identities=36% Similarity=0.504 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
..+++.||||||||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 478999999999999999999999865555554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.028 Score=59.09 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC----CCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~----~~~i~ld~s 252 (1165)
+..++|.|+|||||||+++.|++.++ .+++.++..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 36789999999999999999999874 456666643
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.03 Score=60.02 Aligned_cols=30 Identities=27% Similarity=0.435 Sum_probs=26.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..+.|.||+||||||+++.|++.++.+++
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~ 45 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYL 45 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcee
Confidence 467899999999999999999999987554
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=0.027 Score=65.49 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=28.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
.-+++.||||+|||+||..||+.++..++..|.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 568899999999999999999999876666554
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.026 Score=58.45 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
.-+.|.||+||||||+++.|+..+. -+.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~ 40 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA--EIKISISH 40 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC--CeEEecee
Confidence 5788999999999999999999863 44454433
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.022 Score=59.95 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+.-+.|+||+|+||||+++.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999999874
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.078 Score=59.42 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+..+.|+||+||||||+++.+|..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678899999999999999999987
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.051 Score=74.33 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
++.+++|+||||||||+||.+++... |.....+++.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 35799999999999999999998776 44555555544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.033 Score=58.50 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=28.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC----CCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~----~~fi~l~~s 850 (1165)
+..++|.|+|||||||+++.|++.++ .+++.++..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 35788999999999999999999874 556777643
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.08 E-value=0.072 Score=55.57 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
+..+.+.||+||||||+++.|+..+ +.+++.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3678999999999999999999987 44555554443
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.057 Score=60.56 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..+.|+||+||||||+++.||..+
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999999987
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.024 Score=64.61 Aligned_cols=33 Identities=36% Similarity=0.504 Sum_probs=27.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
..+++.||||+|||++|+.||+.++..++..|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999865555543
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.025 Score=62.64 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
+..+.++|+|||||||+|+.|+ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 4679999999999999999999 57655443
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=94.05 E-value=0.034 Score=65.84 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=34.5
Q ss_pred cchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 187 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 187 GQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+|.+|+..+...+... .+.+++.||||||||+++..++..+
T Consensus 29 ~Q~~av~~~~~~i~~~---------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK---------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSS---------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7888888877777542 2599999999999999999999888
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.026 Score=65.62 Aligned_cols=36 Identities=33% Similarity=0.541 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
..+++.||||||||+||..||+.++..++..|.-.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~Qv 38 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQV 38 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccce
Confidence 578899999999999999999999877666665443
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.031 Score=57.87 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=26.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
..+.|.||+||||||+++.|+..+. -+.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~~~ 40 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA--EIKISISH 40 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS--SEEECCCE
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC--CeEEecee
Confidence 4678999999999999999999863 34554433
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.025 Score=58.08 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++|.||+|+||||+++.|+..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 467899999999999999999855
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.025 Score=58.58 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=22.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.|.||+||||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999987
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=93.92 E-value=0.094 Score=54.66 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=28.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..+.+.||+||||||+++.++..+ +.+.+.++...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3678899999999999999999986 45555554443
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=93.91 E-value=0.029 Score=57.60 Aligned_cols=34 Identities=35% Similarity=0.511 Sum_probs=25.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
..++|.||+|+||||+++.|++..+. .+.++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence 35789999999999999999986542 24444433
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.032 Score=58.50 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.||+|+|||||+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 36788999999999999999999984
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.026 Score=62.49 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=24.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
+..+.+.|+|||||||+|+.|+ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 4678999999999999999999 57765443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.028 Score=59.05 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=23.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+.-+.|.||+|+||||+++.|++.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999999875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.019 Score=67.33 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+.-++++|||||||||+|+.|++.++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 568999999999999999999998865444
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.023 Score=59.35 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+.+.||+||||||+++.|+..++
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999986
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.046 Score=64.74 Aligned_cols=41 Identities=24% Similarity=0.461 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 785 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 785 GQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+|.+|+..+...+... .+.+++.||||||||+++..++..+
T Consensus 29 ~Q~~av~~~~~~i~~~---------------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEK---------------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHHHHSS---------------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC---------------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7888888887776532 2489999999999999999999887
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.034 Score=64.32 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++++||||+||||++++|+..++..++
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 368999999999999999999998865443
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=93.66 E-value=0.035 Score=64.29 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=25.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+..++++||||+||||++++++..++..++
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 368899999999999999999998865443
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=93.63 E-value=0.04 Score=58.04 Aligned_cols=27 Identities=30% Similarity=0.585 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..-+.|.||+|||||||+++|++.+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346889999999999999999999874
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.08 Score=60.07 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
++..+.|+||+||||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999987
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.028 Score=58.75 Aligned_cols=26 Identities=38% Similarity=0.447 Sum_probs=23.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999999987
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.049 Score=57.25 Aligned_cols=29 Identities=28% Similarity=0.309 Sum_probs=26.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.+.||+|||||++++.||+.+|.+|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 46889999999999999999999999876
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.16 Score=56.96 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
++..++++||+||||||++..||..+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34689999999999999999999887
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.041 Score=57.70 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
...+.+.||+|+|||||+++|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35788999999999999999999985
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.53 E-value=0.034 Score=58.07 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+.|+||+|+|||||.+.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999874
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.05 Score=66.81 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
+..++|+|+|||||||+|++|++.+ +.+++.+|.-.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4689999999999999999999999 88998887543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=93.47 E-value=0.14 Score=57.86 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s 252 (1165)
++..++++||+|+||||++..||..+ +....-+++.
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34689999999999999999999887 4444545543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=93.46 E-value=0.095 Score=61.67 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
++..++++||+|+||||++..||..+ +.....+++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 35789999999999999999999888 55555555543
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.045 Score=57.54 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 248 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ 248 (1165)
..+.+.||+|||||++++.||+.+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 478999999999999999999999988773
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.12 Score=61.03 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
+|..++++||||+||||++..||..+ |.....+++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 36799999999999999999999888 55556666544
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.12 Score=59.36 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=23.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+..++|+||+||||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4678899999999999999999987
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=93.35 E-value=0.063 Score=56.54 Aligned_cols=26 Identities=31% Similarity=0.621 Sum_probs=23.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..-+.|.||+|||||||++.|++.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46788999999999999999999875
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=93.35 E-value=0.022 Score=66.73 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+.-++++|||||||||+|+.|++.++..++
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 567899999999999999999998876443
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=93.27 E-value=0.19 Score=56.34 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=26.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEec
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 849 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~ 849 (1165)
+..++++||+||||||++..+|..+ +.....+++
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 5678999999999999999999887 333444444
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.14 Score=58.03 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=23.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+..+.|+||+||||||+++.||..+
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5788999999999999999999987
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=93.24 E-value=0.12 Score=57.82 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh----CCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l----~~~~i~ld~ 251 (1165)
+..++|+||+|+||||++..||..+ |.....+++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 4789999999999999999999877 334444444
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.065 Score=65.86 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=31.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..++|.|+||+||||+|+.|++.+ +.+++.+|.-.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 4679999999999999999999999 89999887543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.043 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.659 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.|+||+|+|||||.+.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5689999999999999999999874
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.096 Score=60.16 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..+.|+||+||||||+++.||..+
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4689999999999999999999987
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=93.11 E-value=0.2 Score=56.55 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=27.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~s 850 (1165)
+..++++||+|+||||++..||..+ +.....+++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 5688999999999999999999887 4445555553
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.035 Score=58.59 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
...++|.||||+|||+||..|++..+ +++..|...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 36799999999999999999998876 6666666554
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=92.99 E-value=0.051 Score=56.67 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
-++|.||+|+|||||++.|.+.....|
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 378999999999999999988875433
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.06 Score=56.13 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=22.7
Q ss_pred EEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
++|.||+|+|||||++.|.+.....|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 88999999999999999988875444
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.057 Score=56.56 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.|.||+|||||||.++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5788999999999999999999984
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.091 Score=54.98 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||||+|||++++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999765
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=92.81 E-value=0.12 Score=61.75 Aligned_cols=25 Identities=48% Similarity=0.667 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..++|+||+||||||+++.||..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4688999999999999999999987
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.065 Score=57.77 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..+-|.|||||||||+|+.|++.++.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 46788999999999999999999976554
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.045 Score=57.81 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=29.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
...++|.||||+|||++|..|++..+ +++..|...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v 69 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDV 69 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhhe
Confidence 36799999999999999999999876 6666555444
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.083 Score=55.03 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
..++++||||+|||++++.++...+.+.+.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 5789999999999999999998445555555543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=92.74 E-value=0.063 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.|.||+|||||||.++|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999999984
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.17 Score=59.48 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=28.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..++++||+|+||||++..||..+ +.....+++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5788999999999999999999887 55555555543
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.1 Score=54.39 Aligned_cols=34 Identities=24% Similarity=0.283 Sum_probs=27.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 850 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~s 850 (1165)
..++++||||+|||++++.++...+.+.+.++..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 5689999999999999999998445555666554
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.057 Score=57.30 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.|+||+|||||||+++|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578899999999999999999987
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.17 Score=60.38 Aligned_cols=25 Identities=48% Similarity=0.667 Sum_probs=22.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+..++|+||+||||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 4678899999999999999999887
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.067 Score=56.75 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=22.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.|+||+|||||||+++|+..+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 568899999999999999999987
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.082 Score=56.99 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
-.+-|.||||+||||+|+.|++.++.+++
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i 37 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI 37 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee
Confidence 35678899999999999999999987655
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.31 Score=57.46 Aligned_cols=37 Identities=27% Similarity=0.408 Sum_probs=30.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
|..++++||||+||||++..||..+ +.....+++..+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 6789999999999999999999887 555666666543
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=92.39 E-value=0.033 Score=58.04 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
-+.|.||+||||||+++.|++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999985
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.13 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..++++||||+|||++++.++..+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999665
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=92.32 E-value=0.072 Score=59.33 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC---CCceEEeccccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATKFT 255 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~---~~~i~ld~s~~~ 255 (1165)
.-+.+.||+||||||+|+.|++.++ ..+..+++..|.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4789999999999999999999875 445667766653
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=92.29 E-value=0.15 Score=56.67 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788999999999999999999985
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=92.28 E-value=0.068 Score=54.35 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.2
Q ss_pred CceEEEEccCCCChhHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRL 836 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~l 836 (1165)
..-+.|+||+|||||||++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 356889999999999999973
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.072 Score=55.88 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.++||+|||||||++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999865
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=92.22 E-value=0.08 Score=53.85 Aligned_cols=20 Identities=30% Similarity=0.684 Sum_probs=18.1
Q ss_pred cEEEEEcCCCCCchHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRL 238 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~l 238 (1165)
.-+.++||+|||||||++++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999974
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=92.16 E-value=0.089 Score=59.05 Aligned_cols=25 Identities=32% Similarity=0.590 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+..+.++||+||||||+++.||..+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4689999999999999999999988
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.042 Score=57.24 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.3
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
-+.|.||+||||||+++.|++.++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3788999999999999999999853
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.071 Score=55.91 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.++||+|||||||++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999865
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=92.01 E-value=0.27 Score=54.96 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s 252 (1165)
+..++++||+|+||||++..||..+ +.....+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5688899999999999999999887 4555555553
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.086 Score=57.81 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||+||||||+.++++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 678999999999999999999987
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=91.98 E-value=0.62 Score=55.19 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
...++|+||||||||+|++.++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3689999999999999999998765
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.089 Score=56.40 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
..-+.|.|||||||||+++.|++.++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 357899999999999999999999964
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.17 Score=56.34 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46889999999999999999999985
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=91.91 E-value=0.2 Score=55.91 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=28.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc----CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l----~~~fi~l~~se 851 (1165)
+..++|+||+|+||||++..||..+ |.....+++..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 5789999999999999999999876 33455555543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=91.84 E-value=0.099 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.|.||.|+|||||.++|+..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 478899999999999999999998
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=91.81 E-value=0.1 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++|+||||+|||++++.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 688999999999999999999853
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=91.73 E-value=0.13 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
..++|+||||+|||++++.++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 57899999999999999999985
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.11 Score=58.44 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=27.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC--CeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA--PFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~--~fi~l~~se~ 852 (1165)
+..+.++||+||||||+++.+|..+.. --+.+.+.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 468889999999999999999988721 1244444443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.065 Score=56.97 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=15.8
Q ss_pred cEEEEEcCCCCCchHHHHHHH-HHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLA-KLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA-~~l~ 243 (1165)
.-+.|+||+||||||+++.|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 578899999999999999999 8763
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.1 Score=56.20 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=24.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
..+-+.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 578899999999999999999998754
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.14 Score=54.21 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~ 251 (1165)
..++++||||+|||+++..++..+ +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 578999999999999998887654 445555554
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=91.63 E-value=0.1 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
..-+.|.|||||||||+++.|++.++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 356888999999999999999999863
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=91.60 E-value=0.11 Score=52.48 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=22.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.|.||.|+|||||.++++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999998
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.11 Score=55.64 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=26.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..+.+.|++|||||++++.||+.++.+|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 46888999999999999999999998764
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.1 Score=55.69 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.|.||+|+|||||.++|+..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5788999999999999999999874
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.52 E-value=0.1 Score=57.14 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..++++||+||||||+.++++..+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC
Confidence 5788999999999999999998873
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.47 E-value=0.094 Score=58.35 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=26.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC---CCeEEEecCCcc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN---APFIKIEATKFT 853 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~se~~ 853 (1165)
.-+.+.||+||||||+|+.|++.++ ..+..+++..|.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 4688999999999999999999875 445667776653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=91.37 E-value=0.096 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.++||+|+||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 357899999999999999999987
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.12 Score=55.26 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.-+.|.||+|+|||||.++|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5678999999999999999999875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.22 Score=56.28 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
|..+.+.||+||||||+++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46788999999999999999999985
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.11 Score=63.24 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC----CCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~----~~~i~ld~s~ 253 (1165)
+..++|.|+|||||||+|++|++.++ .+++.+|...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 46899999999999999999999985 6777777543
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=91.23 E-value=0.12 Score=55.56 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
..+.+.||+|+||||+++.|+..++..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 467899999999999999999988754
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.59 Score=49.09 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld 250 (1165)
+.+++++++|.|||++|-.+|-.. |.....+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 789999999999999999888555 55555444
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.11 Score=55.73 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..+.+.|++|||||++|+.||+.+|.+|+
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~ 43 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFY 43 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEE
Confidence 57899999999999999999999987764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.077 Score=56.43 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=15.6
Q ss_pred ceEEEEccCCCChhHHHHHHH-HHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLA-KLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA-~~l~ 841 (1165)
..+.|.||+||||||+++.|+ ..+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC----
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 567899999999999999999 8764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=91.14 E-value=0.11 Score=54.29 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=21.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHc
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+.++||+||||||+.+.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999987
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.15 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.|.||+||||||+++.|++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999984
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=0.12 Score=57.98 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.|+||+|+|||||+++|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 588999999999999999999998
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=91.06 E-value=0.089 Score=62.46 Aligned_cols=30 Identities=33% Similarity=0.478 Sum_probs=26.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|+|.||+|||++++.|++.++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~ 68 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGV 68 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCC
Confidence 468999999999999999999999865443
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.12 Score=62.31 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
+..++|+|+||+||||+|+.||+.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 45789999999999999999999985443
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.12 Score=58.29 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.||+|||||||++.|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 46788999999999999999999883
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=90.92 E-value=0.22 Score=52.71 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=24.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEec
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 849 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~ 849 (1165)
..++++||||+|||+++..++... +.+.+.++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 578999999999999998777554 445555554
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=90.86 E-value=0.33 Score=58.25 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s 252 (1165)
++..++|+|+|||||||++..||..+ |.....+++.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 35789999999999999999999887 5666666653
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.82 E-value=0.12 Score=58.36 Aligned_cols=26 Identities=35% Similarity=0.454 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
|.-+.+.||+||||||++++|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46889999999999999999999985
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.78 E-value=0.17 Score=58.12 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
..++++||||||||+|+..++..+ +...+.++..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 578999999999999999999876 45556666544
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=1.7 Score=52.75 Aligned_cols=75 Identities=16% Similarity=0.255 Sum_probs=47.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccc-cCceeeeeceeecCceEEEEEeCCcccCCCC--CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV-EGTTVNTKYGIIKTDHILFIASGAFHLAKPS--DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~-Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~--~l~pel~~ 495 (1165)
++-+|+|||++.+..... ..+...|..+. +|.. -.|.+|.+ +.+|+ .+.+.+.+
T Consensus 343 P~ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar~GRa----------~GIhLIla----TQRPs~d~I~~~Ira 399 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVG---------KKVEELIARIAQKARA----------AGIHLILA----TQRPSVDVITGLIKA 399 (574)
T ss_dssp CEEEEEESCCTTHHHHTC---------HHHHHHHHHHHHHCTT----------TTEEEEEE----ESCCCTTTSCHHHHH
T ss_pred CcEEEEEeCHHHHhhhhh---------HHHHHHHHHHHHHHhh----------CCeEEEEE----ecCcccccccHHHHh
Confidence 345899999998875421 11332333332 2321 12333433 25677 57777888
Q ss_pred CCCeeEecCCCCHHHHHHHHh
Q psy2392 496 RFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 496 R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
-|+.+|.|.--+..|...||.
T Consensus 400 n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 400 NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TCCEEEEECCSCHHHHHHHHS
T ss_pred hhccEEEEEcCCHHHHHHhcC
Confidence 999999999999988887773
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.15 Score=62.18 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC----CCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~----~~fi~l~~se 851 (1165)
+..++|.|+||+||||+|++|++.++ .+++.+|...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 46789999999999999999999985 7788887543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=90.66 E-value=0.41 Score=56.16 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEec
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 251 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~ 251 (1165)
++..++++||+|+||||++..||..+ +.....+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 35688999999999999999999988 344455554
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=90.60 E-value=0.56 Score=52.30 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=28.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..+++.||+|+||||++..+|..+ +.....+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5678889999999999999999887 55555556543
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=90.60 E-value=0.14 Score=61.74 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=28.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC---CeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA---PFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~---~fi~l~~se~ 852 (1165)
+..++|+|+||+||||+|+.|++.++. +...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 457899999999999999999999843 3444555443
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.13 Score=58.90 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+.++++||+||||||+.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 689999999999999999999987
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.14 Score=57.71 Aligned_cols=26 Identities=38% Similarity=0.431 Sum_probs=23.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.||+|||||||+++|+..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 45788899999999999999999884
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.15 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=22.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..+.++||+|+|||||+++|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 578899999999999999999998
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=0.12 Score=57.75 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=23.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35788999999999999999999876
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.22 E-value=0.16 Score=52.79 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+++++|++|+|||+|..++....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4699999999999999999998754
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=90.21 E-value=0.64 Score=55.74 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=28.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
+..++|+|+|||||||++..||..+ +.....+++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 5789999999999999999999776 56666666533
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.24 Score=56.85 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=27.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
..++++||||||||+|+..++..+ +.+.+.++..+
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 578889999999999999999875 44556666654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.15 Score=58.72 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||+|+||||+.++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 679999999999999999999987
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=0.16 Score=58.30 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+.+++.||+||||||+.++++..+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhccc
Confidence 5789999999999999999998873
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.02 E-value=0.15 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.|++||||||+++.|++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999994
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=89.96 E-value=0.11 Score=61.79 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=24.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+..++|+|.||+||||+++.|++.++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 46799999999999999999999875433
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=89.96 E-value=0.71 Score=54.16 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=27.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEec
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 849 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~ 849 (1165)
+..++++||+|+||||++..+|..+ +.....+++
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 5778899999999999999999887 344555555
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.23 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..++++|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999998874
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.18 Score=56.41 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+..+.+.||+||||||+++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35789999999999999999999875
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.53 Score=55.36 Aligned_cols=38 Identities=29% Similarity=0.497 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh----CCCceEEecccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEATKF 254 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l----~~~~i~ld~s~~ 254 (1165)
++..++++|++|+||||++-.||..+ |....-+++..+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 35789999999999999999999877 556667776543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=89.80 E-value=0.17 Score=55.77 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.-+++.||||+|||+|++.+|..+
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999887
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=89.75 E-value=0.19 Score=51.05 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
++-.+++||+|||||++.++|+-.++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 36789999999999999999999885
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=89.63 E-value=0.19 Score=57.96 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..++++||+|+||||+.++++..+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 6789999999999999999998873
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=89.60 E-value=0.33 Score=59.90 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=17.9
Q ss_pred cEEEEEcCCCCCchHHH-HHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIA-RRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lA-k~lA~~l 242 (1165)
.-.|++||||||||++. .+++..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999754 5555544
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=89.58 E-value=0.16 Score=61.00 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
...++|.|++||||||+|++||+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999974
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=89.56 E-value=0.18 Score=55.22 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||||+|||+|+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 688999999999999999999765
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=89.55 E-value=0.17 Score=60.95 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC--CCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN--APFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld 250 (1165)
.++++.||+||||||+.++++..+. ...+.++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitie 294 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIE 294 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEc
Confidence 5799999999999999999999883 3334443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=89.51 E-value=0.18 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
..+.+.||+|||||||.++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57889999999999999999987
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.27 Score=52.83 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~ 251 (1165)
-++++.|+||||||+++-.+|..+ |.....++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 579999999999999999999887 555544444
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.15 Score=58.41 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..++++||+|+||||+.++|+..+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6899999999999999999999874
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=89.27 E-value=0.21 Score=53.43 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+..+.+.|++||||||+++.|++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999999994
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=89.14 E-value=0.28 Score=56.04 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 252 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s 252 (1165)
..++++||||+|||+||..++..+ +.....++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 678999999999999999998765 4555666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1165 | ||||
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 1e-136 | |
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 1e-116 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 6e-49 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 7e-33 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 8e-24 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 8e-24 | |
| d1um8a_ | 364 | c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 | 2e-47 | |
| d1um8a_ | 364 | c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 | 7e-36 | |
| d1m4ya_ | 171 | d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma | 1e-36 | |
| d1m4ya_ | 171 | d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga ma | 1e-36 | |
| d1g3ka_ | 173 | d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i | 6e-34 | |
| d1g3ka_ | 173 | d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus i | 6e-34 | |
| d2z3ba1 | 180 | d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus | 4e-32 | |
| d2z3ba1 | 180 | d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus | 4e-32 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 3e-16 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 3e-16 | |
| d1iru2_ | 217 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 4e-14 | |
| d1iru2_ | 217 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 4e-14 | |
| d1iruj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 2e-13 | |
| d1iruj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 2e-13 | |
| d1ryp1_ | 222 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 5e-13 | |
| d1ryp1_ | 222 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 5e-13 | |
| d1iruk_ | 199 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 1e-12 | |
| d1iruk_ | 199 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 1e-12 | |
| d1iru1_ | 213 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 1e-12 | |
| d1iru1_ | 213 | d.153.1.4 (1:) Proteasome beta subunit (catalytic) | 1e-12 | |
| d1rypj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 4e-12 | |
| d1rypj_ | 204 | d.153.1.4 (J:) Proteasome beta subunit (catalytic) | 4e-12 | |
| d1iruh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 1e-11 | |
| d1iruh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 1e-11 | |
| d1ryph_ | 205 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 1e-11 | |
| d1ryph_ | 205 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 1e-11 | |
| d1ryp2_ | 233 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 2e-11 | |
| d1ryp2_ | 233 | d.153.1.4 (2:) Proteasome beta subunit (catalytic) | 2e-11 | |
| d1r6bx3 | 315 | c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A | 2e-11 | |
| d1r6bx3 | 315 | c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A | 2e-11 | |
| d1q5qh_ | 224 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 4e-11 | |
| d1q5qh_ | 224 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 4e-11 | |
| d1rypi_ | 222 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 3e-09 | |
| d1rypi_ | 222 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 3e-09 | |
| d1yarh1 | 203 | d.153.1.4 (H:1-203) Proteasome beta subunit (catal | 7e-08 | |
| d1yarh1 | 203 | d.153.1.4 (H:1-203) Proteasome beta subunit (catal | 7e-08 | |
| d1irul_ | 201 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 1e-07 | |
| d1irul_ | 201 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 1e-07 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 4e-07 | |
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 4e-07 | |
| d1irui_ | 220 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 6e-07 | |
| d1irui_ | 220 | d.153.1.4 (I:) Proteasome beta subunit (catalytic) | 6e-07 | |
| d1j2qh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 9e-07 | |
| d1j2qh_ | 202 | d.153.1.4 (H:) Proteasome beta subunit (catalytic) | 9e-07 | |
| d1rypl_ | 212 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 2e-06 | |
| d1rypl_ | 212 | d.153.1.4 (L:) Proteasome beta subunit (catalytic) | 2e-06 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 3e-06 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 3e-06 | |
| d1rypk_ | 198 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 5e-06 | |
| d1rypk_ | 198 | d.153.1.4 (K:) Proteasome beta subunit (catalytic) | 5e-06 | |
| d1qvra3 | 315 | c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus | 6e-06 | |
| d1qvra3 | 315 | c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus | 6e-06 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 6e-06 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 6e-06 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 7e-06 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 7e-06 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 1e-05 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 1e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 1e-05 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 1e-05 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 1e-04 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 1e-04 | |
| d1kaga_ | 169 | c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia | 1e-04 | |
| d1kaga_ | 169 | c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia | 1e-04 | |
| d1viaa_ | 161 | c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact | 1e-04 | |
| d1viaa_ | 161 | c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact | 1e-04 | |
| d1e6ca_ | 170 | c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr | 3e-04 | |
| d1e6ca_ | 170 | c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr | 3e-04 | |
| d2iyva1 | 165 | c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba | 3e-04 | |
| d2iyva1 | 165 | c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba | 3e-04 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 4e-04 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 4e-04 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 8e-04 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 8e-04 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 8e-04 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 8e-04 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 0.001 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 0.001 | |
| d1y63a_ | 174 | c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma | 0.002 | |
| d1y63a_ | 174 | c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma | 0.002 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.002 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.002 | |
| d1rkba_ | 173 | c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien | 0.003 | |
| d1rkba_ | 173 | c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien | 0.003 | |
| d1rypc_ | 244 | d.153.1.4 (C:) Proteasome alpha subunit (non-catal | 0.004 | |
| d1rypc_ | 244 | d.153.1.4 (C:) Proteasome alpha subunit (non-catal | 0.004 |
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 418 bits (1076), Expect = e-136
Identities = 266/438 (60%), Positives = 354/438 (80%), Gaps = 7/438 (1%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 66
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 67 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 126
Query: 296 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELND-TGPHM 354
E+R++D L+P + + N +++ STRQ FRK+LREG LD+KEIEI+++ +
Sbjct: 127 EERILDALLPPAKNQ--WGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGV 184
Query: 355 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 414
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKAI
Sbjct: 185 EIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAI 244
Query: 415 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 474
+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHIL
Sbjct: 245 DAVEQNGIVFIDEIDKICKK-GEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 303
Query: 475 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 534
FIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATEG
Sbjct: 304 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 363
Query: 535 IKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFN---SNNISLLVDAD 591
+ I F D ++++AE A+ +NE+TENIGARRL+T ME+L++++SF+ N ++ +DA
Sbjct: 364 VNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAA 423
Query: 592 YVNSRLGDLSINEDLSRY 609
YV LG++ NEDLSR+
Sbjct: 424 YVADALGEVVENEDLSRF 441
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 365 bits (938), Expect = e-116
Identities = 242/387 (62%), Positives = 317/387 (81%), Gaps = 4/387 (1%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 66
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D ++K R+ EI K R RAED A
Sbjct: 67 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVA 126
Query: 894 EDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELND-TGPHM 952
E+R++D L+P + + N +++ STRQ FRK+LREG LD+KEIEI+++ +
Sbjct: 127 EERILDALLPPAKNQ--WGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGV 184
Query: 953 EIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAI 1012
EIM+PPGMEEMT Q++++F +G+ + K RK+KI++A+K LID+EA KL+N +E++QKAI
Sbjct: 185 EIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAI 244
Query: 1013 NNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHIL 1072
+ VEQNGI+F+DEIDKI + + + D+SR GVQRDLLPLVEG+TV+TK+G++KTDHIL
Sbjct: 245 DAVEQNGIVFIDEIDKICKK-GEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHIL 303
Query: 1073 FIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEG 1132
FIASGAF +A+PSDLIPELQGR PIRVEL +LS +DF RI+T + LT+QY+AL+ATEG
Sbjct: 304 FIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEG 363
Query: 1133 IKIEFVDDGIQRLAEIAYCINERTENI 1159
+ I F D ++++AE A+ +NE+TENI
Sbjct: 364 VNIAFTTDAVKKIAEAAFRVNEKTENI 390
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 174 bits (441), Expect = 6e-49
Identities = 127/282 (45%), Positives = 186/282 (65%), Gaps = 12/282 (4%)
Query: 331 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIRE 390
+R++ E+ ++ ++ P G+ + T + + + K K E
Sbjct: 35 RRMQLQEPLRHEVTP------KNILMIGPTGVGK-TEIARRLAKLANAPFIKVEATKFTE 87
Query: 391 AIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQR 450
+ + ++ D I+ VEQNGI+F+DEIDKI + + + D+SR GVQR
Sbjct: 88 VGYVGKEVDSIIRDLTDSAGGA-IDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQR 145
Query: 451 DLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISD 510
DLLPLVEG+TV+TK+G++KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +D
Sbjct: 146 DLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAAD 205
Query: 511 FTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570
F RI+T + LT+QY+AL+ATEG+ I F D ++++AE A+ +NE+TENIGARRL+T M
Sbjct: 206 FERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVM 265
Query: 571 EKLLEEVSFN---SNNISLLVDADYVNSRLGDLSINEDLSRY 609
E+L++++SF+ N ++ +DA YV LG++ NEDLSR+
Sbjct: 266 ERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRF 307
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 127 bits (320), Expect = 7e-33
Identities = 103/231 (44%), Positives = 149/231 (64%), Gaps = 9/231 (3%)
Query: 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIRE 988
+R++ E+ ++ ++ P G+ + T + + + K K E
Sbjct: 35 RRMQLQEPLRHEVTP------KNILMIGPTGVGK-TEIARRLAKLANAPFIKVEATKFTE 87
Query: 989 AIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQR 1048
+ + ++ D I+ VEQNGI+F+DEIDKI + + + D+SR GVQR
Sbjct: 88 VGYVGKEVDSIIRDLTDSAGGA-IDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQR 145
Query: 1049 DLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISD 1108
DLLPLVEG+TV+TK+G++KTDHILFIASGAF +A+PSDLIPELQGR PIRVEL +LS +D
Sbjct: 146 DLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAAD 205
Query: 1109 FTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENI 1159
F RI+T + LT+QY+AL+ATEG+ I F D ++++AE A+ +NE+TENI
Sbjct: 206 FERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENI 256
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 101 bits (251), Expect = 8e-24
Identities = 88/138 (63%), Positives = 102/138 (73%), Gaps = 7/138 (5%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 235
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 66
Query: 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 295
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + E N + E
Sbjct: 67 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDE--- 123
Query: 296 EDRVIDILVPSKEKSNLD 313
ID + E S D
Sbjct: 124 ----IDKICKKGEYSGAD 137
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 101 bits (251), Expect = 8e-24
Identities = 88/138 (63%), Positives = 102/138 (73%), Gaps = 7/138 (5%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIA 833
EIVSELD+++IGQ AKRAVAIALRNRWRR Q+ PL+ E+TPKNILMIGPTGVGKTEIA
Sbjct: 7 EIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 66
Query: 834 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAA 893
RRLAKL+NAPFIK+EATKFTEVGYVG++VD+IIRDL D + E N + E
Sbjct: 67 RRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDE--- 123
Query: 894 EDRVIDILVPSKEKSNLD 911
ID + E S D
Sbjct: 124 ----IDKICKKGEYSGAD 137
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Score = 171 bits (434), Expect = 2e-47
Identities = 96/446 (21%), Positives = 161/446 (36%), Gaps = 111/446 (24%)
Query: 176 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQ----------------ITGPLQQEITPK 219
E+ + LD YVIGQ +AK+ ++A+ N ++R + + E++
Sbjct: 10 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKS 69
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQT 279
NIL+IGPTG GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+ S
Sbjct: 70 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 129
Query: 280 REFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339
++ A+ ++ I +D N TR + + +++ L
Sbjct: 130 QK-------------AQKGIVFI-------DEIDKISRLSENRSITRDVSGEGVQQALLK 169
Query: 340 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEE 399
E + PP K RK I
Sbjct: 170 IVE----------GSLVNIPP--------------------KGGRKHPEGNFI------- 192
Query: 400 ANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT 459
Q +++ D + +I + + N
Sbjct: 193 -----------QIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF---------------- 225
Query: 460 TVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTN 519
T+ + K + + H LIPEL GR P+ LDS+S+ I+
Sbjct: 226 ---TQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPK 282
Query: 520 VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSF 579
L KQY+ L + + + F ++ I+ +A++A GAR L +E ++ F
Sbjct: 283 NALIKQYQQLFKMDEVDLIFEEEAIKEIAQLAL-----ERKTGARGLRAIIEDFCLDIMF 337
Query: 580 N---SNNISLLVDADYVNSRLGDLSI 602
+ + + D V + L I
Sbjct: 338 DLPKLKGSEVRITKDCVLKQAEPLII 363
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Score = 138 bits (347), Expect = 7e-36
Identities = 86/393 (21%), Positives = 144/393 (36%), Gaps = 103/393 (26%)
Query: 774 EIVSELDKYVIGQNRAKRAVAIALRNRWRRQQ----------------ITGPLQQEITPK 817
E+ + LD YVIGQ +AK+ ++A+ N ++R + + E++
Sbjct: 10 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKS 69
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQT 877
NIL+IGPTG GKT +A+ LAK + P +AT TE GYVG DV+ I+ L+ S
Sbjct: 70 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNV 129
Query: 878 REFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937
++ A+ ++ I +D N TR + + +++ L
Sbjct: 130 QK-------------AQKGIVFI-------DEIDKISRLSENRSITRDVSGEGVQQALLK 169
Query: 938 NKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEE 997
E + PP K RK I
Sbjct: 170 IVE----------GSLVNIPP--------------------KGGRKHPEGNFI------- 192
Query: 998 ANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGT 1057
Q +++ D + +I + + N
Sbjct: 193 -----------QIDTSDILFICAGAFDGLAEIIKKRTTQNVLGF---------------- 225
Query: 1058 TVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTN 1117
T+ + K + + H LIPEL GR P+ LDS+S+ I+
Sbjct: 226 ---TQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPK 282
Query: 1118 VCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150
L KQY+ L + + + F ++ I+ +A++A
Sbjct: 283 NALIKQYQQLFKMDEVDLIFEEEAIKEIAQLAL 315
|
| >d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Thermotoga maritima [TaxId: 2336]
Score = 134 bits (337), Expect = 1e-36
Identities = 92/164 (56%), Positives = 122/164 (74%), Gaps = 3/164 (1%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTIL VRR + +GGDGQVTFG+ ++K +A+KVRKL + +VLAG AGS ADA TL D F
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 140
EA L + GNL +A+VELAK+WR DR LRRLEA+LL A++E II+GNG+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 141 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY 184
AIGSGG +A +AAKAL NT+L EI++K++ IA E+ Y
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIA---GEICIY 161
|
| >d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Thermotoga maritima [TaxId: 2336]
Score = 134 bits (337), Expect = 1e-36
Identities = 92/164 (56%), Positives = 122/164 (74%), Gaps = 3/164 (1%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTIL VRR + +GGDGQVTFG+ ++K +A+KVRKL + +VLAG AGS ADA TL D F
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGIG 738
EA L + GNL +A+VELAK+WR DR LRRLEA+LL A++E II+GNG+V++P++
Sbjct: 61 EAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAA 120
Query: 739 AIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY 782
AIGSGG +A +AAKAL NT+L EI++K++ IA E+ Y
Sbjct: 121 AIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIA---GEICIY 161
|
| >d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Haemophilus influenzae [TaxId: 727]
Score = 126 bits (317), Expect = 6e-34
Identities = 97/165 (58%), Positives = 128/165 (77%), Gaps = 4/165 (2%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+SVRR +V +GGDGQV+ GN +MK +A+KVR+LY +VLAG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP-ENGI 139
E LE HQG+L++++VELAK+WR DR LR+LEAML+ A+ + +LIITG GDV++P E+ I
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 140 GAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY 184
AIGSGG +A SAA+AL ENTEL EI++KSL IA ++ +
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIA---GDICVF 162
|
| >d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae [TaxId: 727]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Haemophilus influenzae [TaxId: 727]
Score = 126 bits (317), Expect = 6e-34
Identities = 97/165 (58%), Positives = 128/165 (77%), Gaps = 4/165 (2%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+SVRR +V +GGDGQV+ GN +MK +A+KVR+LY +VLAG AG TADAFTL + F
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP-ENGI 737
E LE HQG+L++++VELAK+WR DR LR+LEAML+ A+ + +LIITG GDV++P E+ I
Sbjct: 61 ERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQI 120
Query: 738 GAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY 782
AIGSGG +A SAA+AL ENTEL EI++KSL IA ++ +
Sbjct: 121 LAIGSGGNYALSAARALVENTELSAHEIVEKSLRIA---GDICVF 162
|
| >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Bacillus subtilis [TaxId: 1423]
Score = 121 bits (304), Expect = 4e-32
Identities = 87/170 (51%), Positives = 125/170 (73%), Gaps = 6/170 (3%)
Query: 18 FQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFTL 76
F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADAFTL
Sbjct: 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTL 62
Query: 77 LDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPE 136
+ FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+EP+
Sbjct: 63 FEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPD 122
Query: 137 NGIGAIGSGGIFAQSAAKALQEN--TELMPDEIIKKSLVIAEIVSELDKY 184
+GI AIGSGG +A +A +AL+++ + EI + +L A E+ Y
Sbjct: 123 DGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETA---GEICVY 169
|
| >d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis [TaxId: 1423]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: HslV (ClpQ) protease species: Bacillus subtilis [TaxId: 1423]
Score = 121 bits (304), Expect = 4e-32
Identities = 87/170 (51%), Positives = 125/170 (73%), Gaps = 6/170 (3%)
Query: 616 FQGTTILSVRRGNKVSLGGDGQVTFGN-VIMKNSAKKVRKLYQNQVLAGIAGSTADAFTL 674
F TTI +V+ + ++ GDGQVTFG V+MK++A+KVRKL+ +VLAG AGS ADAFTL
Sbjct: 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTL 62
Query: 675 LDFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPE 734
+ FEA LE++ GNL RA+VELAKEWR+D+ LR+LEAML+ N++T L+++G G+V+EP+
Sbjct: 63 FEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPD 122
Query: 735 NGIGAIGSGGIFAQSAAKALQEN--TELMPDEIIKKSLVIAEIVSELDKY 782
+GI AIGSGG +A +A +AL+++ + EI + +L A E+ Y
Sbjct: 123 DGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETA---GEICVY 169
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 76.3 bits (186), Expect = 3e-16
Identities = 23/188 (12%), Positives = 57/188 (30%), Gaps = 4/188 (2%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 278
K + ++G GK+ + +LA + N +F G + D +++
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 67
Query: 279 TREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 338
R + + + I + F + +
Sbjct: 68 QRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT-- 125
Query: 339 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI-KLLID 397
+ + ++++ + K + I + R +++ I K+L +
Sbjct: 126 -EWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNE 184
Query: 398 EEANKLLN 405
EE ++L N
Sbjct: 185 EEISELQN 192
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 76.3 bits (186), Expect = 3e-16
Identities = 23/188 (12%), Positives = 57/188 (30%), Gaps = 4/188 (2%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQ 876
K + ++G GK+ + +LA + N +F G + D +++
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 67
Query: 877 TREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 936
R + + + I + F + +
Sbjct: 68 QRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNT-- 125
Query: 937 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAI-KLLID 995
+ + ++++ + K + I + R +++ I K+L +
Sbjct: 126 -EWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEKVLNE 184
Query: 996 EEANKLLN 1003
EE ++L N
Sbjct: 185 EEISELQN 192
|
| >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.6 bits (172), Expect = 4e-14
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT++L V+ V + D ++G++ + ++ ++ + + G +G AD L
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNS-TMLGASGDYADFQYLKQV 66
Query: 80 F--EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTAN--------RETTLIITGN 129
E+ G+ S W R M N + + +
Sbjct: 67 LGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVD 126
Query: 130 GDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDE----IIKKSLVIA 175
+ E A G G AQ + + E ++ ++++ + +
Sbjct: 127 MLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVL 176
|
| >d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.6 bits (172), Expect = 4e-14
Identities = 26/170 (15%), Positives = 58/170 (34%), Gaps = 15/170 (8%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GT++L V+ V + D ++G++ + ++ ++ + + G +G AD L
Sbjct: 8 GTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNS-TMLGASGDYADFQYLKQV 66
Query: 678 F--EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTAN--------RETTLIITGN 727
E+ G+ S W R M N + + +
Sbjct: 67 LGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVD 126
Query: 728 GDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDE----IIKKSLVIA 773
+ E A G G AQ + + E ++ ++++ + +
Sbjct: 127 MLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVL 176
|
| >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.9 bits (165), Expect = 2e-13
Identities = 19/170 (11%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 18 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLL 77
+ G +++++ N V++ D + ++ +K+ + + +AG D T+
Sbjct: 5 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIG-LAGLATDVQTVA 63
Query: 78 DFFEANLEKHQGNLMR-----ASVELAKEWRNDRTLRRLEAMLLTA--NRETTLIITGNG 130
+ L ++ R + + ++ + A + +T +
Sbjct: 64 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 123
Query: 131 DVLEPENGIGAIGSGGIFAQSAAKALQ-----ENTELMPDEIIKKSLVIA 175
D++ G A+ + E I ++++ A
Sbjct: 124 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNA 173
|
| >d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 67.9 bits (165), Expect = 2e-13
Identities = 19/170 (11%), Positives = 55/170 (32%), Gaps = 13/170 (7%)
Query: 616 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLL 675
+ G +++++ N V++ D + ++ +K+ + + +AG D T+
Sbjct: 5 YNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIG-LAGLATDVQTVA 63
Query: 676 DFFEANLEKHQGNLMR-----ASVELAKEWRNDRTLRRLEAMLLTA--NRETTLIITGNG 728
+ L ++ R + + ++ + A + +T +
Sbjct: 64 QRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 123
Query: 729 DVLEPENGIGAIGSGGIFAQSAAKALQ-----ENTELMPDEIIKKSLVIA 773
D++ G A+ + E I ++++ A
Sbjct: 124 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNA 173
|
| >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.5 bits (164), Expect = 5e-13
Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 12/144 (8%)
Query: 18 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLL 77
G TIL + + L GD + I KV N ++ G AD L+
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDN-IVMSANGFAADGDALV 65
Query: 78 DFFEANLEKHQGNLMRASVELAKEWRNDRTLRR----------LEAMLLTANRETTLIIT 127
F+ +++ + + + + RN + L L + + +
Sbjct: 66 KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125
Query: 128 GNGDVLEPENGIGAIGSGGIFAQS 151
E E A G+
Sbjct: 126 DPVGSYEREQCR-AGGAAASLIMP 148
|
| >d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.5 bits (164), Expect = 5e-13
Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 12/144 (8%)
Query: 616 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLL 675
G TIL + + L GD + I KV N ++ G AD L+
Sbjct: 7 DNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDN-IVMSANGFAADGDALV 65
Query: 676 DFFEANLEKHQGNLMRASVELAKEWRNDRTLRR----------LEAMLLTANRETTLIIT 725
F+ +++ + + + + RN + L L + + +
Sbjct: 66 KRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125
Query: 726 GNGDVLEPENGIGAIGSGGIFAQS 749
E E A G+
Sbjct: 126 DPVGSYEREQCR-AGGAAASLIMP 148
|
| >d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.7 bits (159), Expect = 1e-12
Identities = 19/167 (11%), Positives = 47/167 (28%), Gaps = 13/167 (7%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
++ ++ + V + D V MK+ K+ K+ + +L G D ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEK-ILLLCVGEAGDTVQFAEYI 60
Query: 81 EANLEKHQGNLMRASVELA------------KEWRNDRTLRRLEAMLLTANRETTLIITG 128
+ N++ ++ A R + L A +
Sbjct: 61 QKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDY 120
Query: 129 NGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 175
+ + G+ + + E+++K L
Sbjct: 121 LAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEEL 167
|
| >d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.7 bits (159), Expect = 1e-12
Identities = 19/167 (11%), Positives = 47/167 (28%), Gaps = 13/167 (7%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
++ ++ + V + D V MK+ K+ K+ + +L G D ++
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEK-ILLLCVGEAGDTVQFAEYI 60
Query: 679 EANLEKHQGNLMRASVELA------------KEWRNDRTLRRLEAMLLTANRETTLIITG 726
+ N++ ++ A R + L A +
Sbjct: 61 QKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDY 120
Query: 727 NGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIA 773
+ + G+ + + E+++K L
Sbjct: 121 LAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEEL 167
|
| >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.1 bits (160), Expect = 1e-12
Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 20/177 (11%)
Query: 18 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLL 77
F G TIL++ + + D +++ G I + K K ++ + G +G D TL
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYK-LTDKTVIGCSGFHGDCLTLT 65
Query: 78 DFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPEN 137
EA L+ ++ + +A A L + + +
Sbjct: 66 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 125
Query: 138 GI--------GAIGSGGIFAQSAAKALQENTELMPD-----------EIIKKSLVIA 175
+ A GS Q + ++K + A
Sbjct: 126 PVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISA 182
|
| >d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.1 bits (160), Expect = 1e-12
Identities = 27/177 (15%), Positives = 52/177 (29%), Gaps = 20/177 (11%)
Query: 616 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLL 675
F G TIL++ + + D +++ G I + K K ++ + G +G D TL
Sbjct: 7 FNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYK-LTDKTVIGCSGFHGDCLTLT 65
Query: 676 DFFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPEN 735
EA L+ ++ + +A A L + + +
Sbjct: 66 KIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 125
Query: 736 GI--------GAIGSGGIFAQSAAKALQENTELMPD-----------EIIKKSLVIA 773
+ A GS Q + ++K + A
Sbjct: 126 PVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISA 182
|
| >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.4 bits (156), Expect = 4e-12
Identities = 27/209 (12%), Positives = 69/209 (33%), Gaps = 23/209 (11%)
Query: 18 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLL 77
G ++++ + V++ D ++ ++ + N +K+ V GI G D TL
Sbjct: 6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY--GHVFLGITGLATDVTTLN 63
Query: 78 DFFEANLEKHQGNLMRA----------SVELAKEWRNDRTLRRLEAMLLTANRETTLIIT 127
+ F ++ RA S L + + + A + + + + +
Sbjct: 64 EMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123
Query: 128 GNGDVLEPENGIGAIGSGGIFAQSAAKA--LQENTELMPDEIIKKSLVIAEIVSELDKYV 185
++ G+ ++ E I ++L+ A ++ D
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNA---ADRDALS 180
Query: 186 IGQNRAKRAVAIALRNRWRRQQITGPLQQ 214
V I ++ ++ + ++Q
Sbjct: 181 GWGAV----VYIIKKDEVVKRYL--KMRQ 203
|
| >d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 64.4 bits (156), Expect = 4e-12
Identities = 27/209 (12%), Positives = 69/209 (33%), Gaps = 23/209 (11%)
Query: 616 FQGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLL 675
G ++++ + V++ D ++ ++ + N +K+ V GI G D TL
Sbjct: 6 INGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY--GHVFLGITGLATDVTTLN 63
Query: 676 DFFEANLEKHQGNLMRA----------SVELAKEWRNDRTLRRLEAMLLTANRETTLIIT 725
+ F ++ RA S L + + + A + + + + +
Sbjct: 64 EMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123
Query: 726 GNGDVLEPENGIGAIGSGGIFAQSAAKA--LQENTELMPDEIIKKSLVIAEIVSELDKYV 783
++ G+ ++ E I ++L+ A ++ D
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNA---ADRDALS 180
Query: 784 IGQNRAKRAVAIALRNRWRRQQITGPLQQ 812
V I ++ ++ + ++Q
Sbjct: 181 GWGAV----VYIIKKDEVVKRYL--KMRQ 203
|
| >d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.2 bits (153), Expect = 1e-11
Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 17/199 (8%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI++V+ V LG D + T G+ I K+ ++ + +GS AD + D
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDR-IFCCRSGSAADTQAVADAV 59
Query: 81 EANLEKHQGNLMR-ASVELAKEWRNDRTLRR---LEAMLLTA---NRETTLIITGNGDVL 133
L H L V A + R L A ++ A +E + + +
Sbjct: 60 TYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGM 119
Query: 134 EPENGIGAIGSGGIFAQSAAKALQENTELMPD--EIIKKSLVIAEIVSELDKYVIGQNRA 191
GSG + A + + +L +A E D G R
Sbjct: 120 MVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALA---MERDGSSGGVIR- 175
Query: 192 KRAVAIALRNRWRRQQITG 210
+A + RQ + G
Sbjct: 176 ---LAAIAESGVERQVLLG 191
|
| >d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.2 bits (153), Expect = 1e-11
Identities = 41/199 (20%), Positives = 67/199 (33%), Gaps = 17/199 (8%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI++V+ V LG D + T G+ I K+ ++ + +GS AD + D
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDR-IFCCRSGSAADTQAVADAV 59
Query: 679 EANLEKHQGNLMR-ASVELAKEWRNDRTLRR---LEAMLLTA---NRETTLIITGNGDVL 731
L H L V A + R L A ++ A +E + + +
Sbjct: 60 TYQLGFHSIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGM 119
Query: 732 EPENGIGAIGSGGIFAQSAAKALQENTELMPD--EIIKKSLVIAEIVSELDKYVIGQNRA 789
GSG + A + + +L +A E D G R
Sbjct: 120 MVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALA---MERDGSSGGVIR- 175
Query: 790 KRAVAIALRNRWRRQQITG 808
+A + RQ + G
Sbjct: 176 ---LAAIAESGVERQVLLG 191
|
| >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.8 bits (152), Expect = 1e-11
Identities = 38/201 (18%), Positives = 61/201 (30%), Gaps = 18/201 (8%)
Query: 19 QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLD 78
G +I++V + V LG D + T G I K+ +++ + +GS AD + D
Sbjct: 8 LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDK-IWCCRSGSAADTQAIAD 66
Query: 79 FFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENG 138
+ +LE + S E A + + L G+V G
Sbjct: 67 IVQYHLELYTSQYGTPSTETAASVFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIPLG 125
Query: 139 -------IGAIGSGGIFAQSAAKALQENTELMPD--EIIKKSLVIAEIVSELDKYVIGQN 189
GSG F + + IK SL A + D G
Sbjct: 126 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQA---IKWDGSSGGVI 182
Query: 190 RAKRAVAIALRNRWRRQQITG 210
R + + R
Sbjct: 183 R----MVVLTAAGVERLIFYP 199
|
| >d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.8 bits (152), Expect = 1e-11
Identities = 38/201 (18%), Positives = 61/201 (30%), Gaps = 18/201 (8%)
Query: 617 QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLD 676
G +I++V + V LG D + T G I K+ +++ + +GS AD + D
Sbjct: 8 LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDK-IWCCRSGSAADTQAIAD 66
Query: 677 FFEANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENG 736
+ +LE + S E A + + L G+V G
Sbjct: 67 IVQYHLELYTSQYGTPSTETAASVFKELCYENKD-NLTAGIIVAGYDDKNKGEVYTIPLG 125
Query: 737 -------IGAIGSGGIFAQSAAKALQENTELMPD--EIIKKSLVIAEIVSELDKYVIGQN 787
GSG F + + IK SL A + D G
Sbjct: 126 GSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQA---IKWDGSSGGVI 182
Query: 788 RAKRAVAIALRNRWRRQQITG 808
R + + R
Sbjct: 183 R----MVVLTAAGVERLIFYP 199
|
| >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.8 bits (152), Expect = 2e-11
Identities = 24/179 (13%), Positives = 63/179 (35%), Gaps = 25/179 (13%)
Query: 20 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 79
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 66
Query: 80 FEANLEKHQGNLMRASVE-------LAKEWRN---------DRTLRRLEAMLLTANRETT 123
+ + ++ + A E + + + + + +N +
Sbjct: 67 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQF 126
Query: 124 LIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPD-------EIIKKSLVIA 175
L V + G G A + + + +P E I ++ +
Sbjct: 127 LRYVNLLGVTYSSPTLA-TGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184
|
| >d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 62.8 bits (152), Expect = 2e-11
Identities = 24/179 (13%), Positives = 63/179 (35%), Gaps = 25/179 (13%)
Query: 618 GTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDF 677
GT+++S++ N V + D ++G+++ N +++ + N + GI+G +D +
Sbjct: 8 GTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDN-TVVGISGDISDMQHIERL 66
Query: 678 FEANLEKHQGNLMRASVE-------LAKEWRN---------DRTLRRLEAMLLTANRETT 721
+ + ++ + A E + + + + + +N +
Sbjct: 67 LKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQF 126
Query: 722 LIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQENTELMPD-------EIIKKSLVIA 773
L V + G G A + + + +P E I ++ +
Sbjct: 127 LRYVNLLGVTYSSPTLA-TGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 64.1 bits (155), Expect = 2e-11
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 174 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKT 232
+ + L V GQ++A A+ A++ L E P + L GPTGVGKT
Sbjct: 13 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAG------LGHEHKPVGSFLFAGPTGVGKT 66
Query: 233 EIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 266
E+ +L+K ++ + +++ E V R +
Sbjct: 67 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 100
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 64.1 bits (155), Expect = 2e-11
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 772 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPK-NILMIGPTGVGKT 830
+ + L V GQ++A A+ A++ L E P + L GPTGVGKT
Sbjct: 13 LKNLGDRLKMLVFGQDKAIEALTEAIKMARAG------LGHEHKPVGSFLFAGPTGVGKT 66
Query: 831 EIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDT 864
E+ +L+K ++ + +++ E V R +
Sbjct: 67 EVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 100
|
| >d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Score = 62.2 bits (150), Expect = 4e-11
Identities = 45/208 (21%), Positives = 71/208 (34%), Gaps = 27/208 (12%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+++ V L GD + T GN+I +KV + AGIAG+ A L+ F
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEY-SAAGIAGTAGIAIELVRLF 59
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTL--------RRLEAMLLTANRETT--------- 123
LE ++ K R + + L + L +
Sbjct: 60 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119
Query: 124 -LIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQEN--TELMPDEIIKKSLVIAEIVSE 180
+ G E G A+GSG +FA+SA K + E +SL A ++
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDA---AD 176
Query: 181 LDKYVIGQNRAKR---AVAIALRNRWRR 205
D G + + +
Sbjct: 177 DDSATGGPDLTRGIYPTAVTITQAGAVH 204
|
| >d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Rhodococcus erythropolis [TaxId: 1833]
Score = 62.2 bits (150), Expect = 4e-11
Identities = 45/208 (21%), Positives = 71/208 (34%), Gaps = 27/208 (12%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+++ V L GD + T GN+I +KV + AGIAG+ A L+ F
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEY-SAAGIAGTAGIAIELVRLF 59
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTL--------RRLEAMLLTANRETT--------- 721
LE ++ K R + + L + L +
Sbjct: 60 AVELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGR 119
Query: 722 -LIITGNGDVLEPENGIGAIGSGGIFAQSAAKALQEN--TELMPDEIIKKSLVIAEIVSE 778
+ G E G A+GSG +FA+SA K + E +SL A ++
Sbjct: 120 IVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDA---AD 176
Query: 779 LDKYVIGQNRAKR---AVAIALRNRWRR 803
D G + + +
Sbjct: 177 DDSATGGPDLTRGIYPTAVTITQAGAVH 204
|
| >d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (135), Expect = 3e-09
Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 9/160 (5%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQLI 59
Query: 81 EANLEKHQGNLMR--ASVELAKEWRN--DRTLRRLEAMLLTA--NRETTLIITGNGDVLE 134
+N+E H R V + + + + A L+ A + + + + +
Sbjct: 60 GSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST 119
Query: 135 PENGIGAIGSGGIFAQSAAKALQENTELMPD--EIIKKSL 172
++GSG + A + ++ + + ++ ++
Sbjct: 120 DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAI 159
|
| >d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (135), Expect = 3e-09
Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 9/160 (5%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI+ V+ N V + D + T G ++ + K+ ++ + AG+ AD +
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPK-IWCAGAGTAADTEAVTQLI 59
Query: 679 EANLEKHQGNLMR--ASVELAKEWRN--DRTLRRLEAMLLTA--NRETTLIITGNGDVLE 732
+N+E H R V + + + + A L+ A + + + + +
Sbjct: 60 GSNIELHSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGST 119
Query: 733 PENGIGAIGSGGIFAQSAAKALQENTELMPD--EIIKKSL 770
++GSG + A + ++ + + ++ ++
Sbjct: 120 DVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAI 159
|
| >d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 52.1 bits (124), Expect = 7e-08
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 9/163 (5%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT + + + V + + +VT N IM + KK+ ++ IAG DA L+ +
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTY-TGMTIAGLVGDAQVLVRYM 59
Query: 81 EAN-----LEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP 135
+A L++ + A L N LL +T +
Sbjct: 60 KAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGS 119
Query: 136 -ENGIGAIGSGGIFAQSAAKAL--QENTELMPDEIIKKSLVIA 175
E+ + GSG F ++ ++ T +++ +++ A
Sbjct: 120 VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAA 162
|
| >d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 203 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 52.1 bits (124), Expect = 7e-08
Identities = 31/163 (19%), Positives = 61/163 (37%), Gaps = 9/163 (5%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT + + + V + + +VT N IM + KK+ ++ IAG DA L+ +
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTY-TGMTIAGLVGDAQVLVRYM 59
Query: 679 EAN-----LEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEP 733
+A L++ + A L N LL +T +
Sbjct: 60 KAELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVFSIDAAGGS 119
Query: 734 -ENGIGAIGSGGIFAQSAAKAL--QENTELMPDEIIKKSLVIA 773
E+ + GSG F ++ ++ T +++ +++ A
Sbjct: 120 VEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAA 162
|
| >d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (121), Expect = 1e-07
Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 15/187 (8%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT L+ + + V + D + T G I + KKV ++ +L +AG AD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPY-LLGTMAGGAADCSFWERLL 59
Query: 81 EANLEKHQ-GNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGI 139
++ N R SV A + + + L G G G
Sbjct: 60 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGN 119
Query: 140 ------GAIGSGGIFAQSAAKALQEN--TELMPDEIIKKSLVIA---EIVS--ELDKYVI 186
++GSG ++A ++ ++++ A + S ++ Y +
Sbjct: 120 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 179
Query: 187 GQNRAKR 193
++ R
Sbjct: 180 REDGWIR 186
|
| >d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.9 bits (121), Expect = 1e-07
Identities = 33/187 (17%), Positives = 64/187 (34%), Gaps = 15/187 (8%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT L+ + + V + D + T G I + KKV ++ +L +AG AD
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPY-LLGTMAGGAADCSFWERLL 59
Query: 679 EANLEKHQ-GNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGI 737
++ N R SV A + + + L G G G
Sbjct: 60 ARQCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYYVDSEGN 119
Query: 738 ------GAIGSGGIFAQSAAKALQEN--TELMPDEIIKKSLVIA---EIVS--ELDKYVI 784
++GSG ++A ++ ++++ A + S ++ Y +
Sbjct: 120 RISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHV 179
Query: 785 GQNRAKR 791
++ R
Sbjct: 180 REDGWIR 186
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 50.2 bits (120), Expect = 4e-07
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 185 VIGQNRAKRA---VAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 241
V G AK + L+N R ++ + PK +L++GP GVGKT +AR +A
Sbjct: 11 VAGAEEAKEELKEIVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGE 65
Query: 242 SNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 273
+ PFI + F E +VG +RDL +
Sbjct: 66 ARVPFITASGSDFVE-MFVG-VGAARVRDLFE 95
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 50.2 bits (120), Expect = 4e-07
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 783 VIGQNRAKRA---VAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 839
V G AK + L+N R ++ + PK +L++GP GVGKT +AR +A
Sbjct: 11 VAGAEEAKEELKEIVEFLKNPSRFHEMGARI-----PKGVLLVGPPGVGKTHLARAVAGE 65
Query: 840 SNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 871
+ PFI + F E +VG +RDL +
Sbjct: 66 ARVPFITASGSDFVE-MFVG-VGAARVRDLFE 95
|
| >d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.4 bits (117), Expect = 6e-07
Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 9/160 (5%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TTI V + + LG D + T G V+ + K+ + N + AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPN-IYCCGAGTAADTDMTTQLI 59
Query: 81 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGI- 139
+NLE H + R + + L R + A + +TG +G
Sbjct: 60 SSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST 119
Query: 140 -----GAIGSGGIFAQSAAKAL--QENTELMPDEIIKKSL 172
+GSG + A + + + E ++ +++
Sbjct: 120 DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAI 159
|
| >d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow (Bos taurus) [TaxId: 9913]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.4 bits (117), Expect = 6e-07
Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 9/160 (5%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TTI V + + LG D + T G V+ + K+ + N + AG+ AD
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPN-IYCCGAGTAADTDMTTQLI 59
Query: 679 EANLEKHQGNLMRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGI- 737
+NLE H + R + + L R + A + +TG +G
Sbjct: 60 SSNLELHSLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGST 119
Query: 738 -----GAIGSGGIFAQSAAKAL--QENTELMPDEIIKKSL 770
+GSG + A + + + E ++ +++
Sbjct: 120 DKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAI 159
|
| >d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.6 bits (115), Expect = 9e-07
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT + + + V + + + T GN I +AKK+ ++ + AGS DA L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADR-MAMTTAGSVGDAQFLARII 59
Query: 81 EANLEKHQGNLMR-----ASVELAKEWRNDRTLRRLEAMLLTA----NRETTLIITGNGD 131
+ ++ R A L N LL ++ I G
Sbjct: 60 KIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGG 119
Query: 132 VLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY 184
+E ++ I A GSG + A + + E+ DE ++ ++ + D
Sbjct: 120 AIEEKD-IVATGSGSLTAYGVLED-RFTPEIGVDEAVELAVRAIYSAMKRDSA 170
|
| >d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.6 bits (115), Expect = 9e-07
Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT + + + V + + + T GN I +AKK+ ++ + AGS DA L
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADR-MAMTTAGSVGDAQFLARII 59
Query: 679 EANLEKHQGNLMR-----ASVELAKEWRNDRTLRRLEAMLLTA----NRETTLIITGNGD 729
+ ++ R A L N LL ++ I G
Sbjct: 60 KIEANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGG 119
Query: 730 VLEPENGIGAIGSGGIFAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKY 782
+E ++ I A GSG + A + + E+ DE ++ ++ + D
Sbjct: 120 AIEEKD-IVATGSGSLTAYGVLED-RFTPEIGVDEAVELAVRAIYSAMKRDSA 170
|
| >d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.8 bits (113), Expect = 2e-06
Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 13/166 (7%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
TT L+ R + + D + T GN + + K+V ++ +L +AG AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPF-LLGTMAGGAADCQFWETWL 59
Query: 81 EANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGI 139
+ H+ R SV A + ++ + A L G + +
Sbjct: 60 GSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGT-MICGYTRKEGPTIYYVDSD 118
Query: 140 G--------AIGSGGIFAQSAAKALQENTELMPD--EIIKKSLVIA 175
G +GSG FA + + + D + K+S++ A
Sbjct: 119 GTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAA 164
|
| >d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.8 bits (113), Expect = 2e-06
Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 13/166 (7%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
TT L+ R + + D + T GN + + K+V ++ +L +AG AD +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPF-LLGTMAGGAADCQFWETWL 59
Query: 679 EANLEKHQGNL-MRASVELAKEWRNDRTLRRLEAMLLTANRETTLIITGNGDVLEPENGI 737
+ H+ R SV A + ++ + A L G + +
Sbjct: 60 GSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGT-MICGYTRKEGPTIYYVDSD 118
Query: 738 G--------AIGSGGIFAQSAAKALQENTELMPD--EIIKKSLVIA 773
G +GSG FA + + + D + K+S++ A
Sbjct: 119 GTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAA 164
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 47.9 bits (114), Expect = 3e-06
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 185 VIGQNRAKRAVA---IALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 241
V G + AK VA LR R Q++ G + PK +LM+GP G GKT +A+ +A
Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 242 SNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 273
+ PF I + F E +VG + +RD+ +
Sbjct: 69 AKVPFFTISGSDFVE-MFVG-VGASRVRDMFE 98
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 47.9 bits (114), Expect = 3e-06
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 10/92 (10%)
Query: 783 VIGQNRAKRAVA---IALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 839
V G + AK VA LR R Q++ G + PK +LM+GP G GKT +A+ +A
Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKI-----PKGVLMVGPPGTGKTLLAKAIAGE 68
Query: 840 SNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 871
+ PF I + F E +VG + +RD+ +
Sbjct: 69 AKVPFFTISGSDFVE-MFVG-VGASRVRDMFE 98
|
| >d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (109), Expect = 5e-06
Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 14/168 (8%)
Query: 21 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 80
IL +R + V L VT G ++K+S K R+L + L AG D ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPH-TLMSFAGEAGDTVQFAEYI 60
Query: 81 EANLEKHQGNLMR-------ASVELAKEWRNDRTLRRLEAMLLTA----NRETTLIITGN 129
+AN++ + +S + ++ R+ R + +L + + +
Sbjct: 61 QANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQID 120
Query: 130 GDVLEPENGIGAIGSGGIFAQSAAKALQEN--TELMPDEIIKKSLVIA 175
+ E GA G G + S T +++K +
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQEL 168
|
| >d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome beta subunit (catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.3 bits (109), Expect = 5e-06
Identities = 31/168 (18%), Positives = 60/168 (35%), Gaps = 14/168 (8%)
Query: 619 TTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFF 678
IL +R + V L VT G ++K+S K R+L + L AG D ++
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPH-TLMSFAGEAGDTVQFAEYI 60
Query: 679 EANLEKHQGNLMR-------ASVELAKEWRNDRTLRRLEAMLLTA----NRETTLIITGN 727
+AN++ + +S + ++ R+ R + +L + + +
Sbjct: 61 QANIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQID 120
Query: 728 GDVLEPENGIGAIGSGGIFAQSAAKALQEN--TELMPDEIIKKSLVIA 773
+ E GA G G + S T +++K +
Sbjct: 121 YLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQEL 168
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 47.4 bits (112), Expect = 6e-06
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 174 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 233
+ + EL K V+GQ+ A RAVA A+R R R G + L +GPTGVGKTE
Sbjct: 14 LLRLEEELHKRVVGQDEAIRAVADAIR-RAR----AGLKDPNRPIGSFLFLGPTGVGKTE 68
Query: 234 IARRLAKL---SNAPFIKIEATKFTEV-----------GYVGRDVDTIIRDLI 272
+A+ LA + I+I+ T++ E GYVG + + + +
Sbjct: 69 LAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV 121
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 47.4 bits (112), Expect = 6e-06
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 772 IAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTE 831
+ + EL K V+GQ+ A RAVA A+R R R G + L +GPTGVGKTE
Sbjct: 14 LLRLEEELHKRVVGQDEAIRAVADAIR-RAR----AGLKDPNRPIGSFLFLGPTGVGKTE 68
Query: 832 IARRLAKL---SNAPFIKIEATKFTEV-----------GYVGRDVDTIIRDLI 870
+A+ LA + I+I+ T++ E GYVG + + + +
Sbjct: 69 LAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV 121
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 47.2 bits (111), Expect = 6e-06
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA 244
++GQ K A+ + + +L+ G G GK+ R LA L
Sbjct: 9 IVGQEDMKLALLLTAVDPGIG--------------GVLVFGDRGTGKSTAVRALAALLP- 53
Query: 245 PFIKIEATKFT 255
+E +
Sbjct: 54 EIEAVEGCPVS 64
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 47.2 bits (111), Expect = 6e-06
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA 842
++GQ K A+ + + +L+ G G GK+ R LA L
Sbjct: 9 IVGQEDMKLALLLTAVDPGIG--------------GVLVFGDRGTGKSTAVRALAALLP- 53
Query: 843 PFIKIEATKFT 853
+E +
Sbjct: 54 EIEAVEGCPVS 64
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 46.5 bits (109), Expect = 7e-06
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA 244
IGQ R K+ + + L R++ +++L+ GP G+GKT +A +A
Sbjct: 11 YIGQERLKQKLRVYLEAAKARKEP---------LEHLLLFGPPGLGKTTLAHVIAHELGV 61
Query: 245 PFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILV 304
+ G + + + + + I + + A ED V+DI++
Sbjct: 62 NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRL-SRQAEEHLYPAMEDFVMDIVI 120
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 46.5 bits (109), Expect = 7e-06
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA 842
IGQ R K+ + + L R++ +++L+ GP G+GKT +A +A
Sbjct: 11 YIGQERLKQKLRVYLEAAKARKEP---------LEHLLLFGPPGLGKTTLAHVIAHELGV 61
Query: 843 PFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILV 902
+ G + + + + + I + + A ED V+DI++
Sbjct: 62 NLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRL-SRQAEEHLYPAMEDFVMDIVI 120
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 46.1 bits (108), Expect = 1e-05
Identities = 26/240 (10%), Positives = 75/240 (31%), Gaps = 4/240 (1%)
Query: 206 QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVD 265
+++ + +P L+ G G GKT + + + + I I+ F + ++
Sbjct: 20 EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELV 79
Query: 266 TIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNIST 325
+ + + + +R D + VI+ + + +
Sbjct: 80 KLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETK 139
Query: 326 RQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQI--KTMFSVIGNHRKKT 383
+ L E + P +P ++ + + ++
Sbjct: 140 MYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSD 199
Query: 384 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDI 443
++ RE +KL E + ++ ++++ V +++I + N + +
Sbjct: 200 IRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKE--IQPTLERIEQKMVLNKHQET 257
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 46.1 bits (108), Expect = 1e-05
Identities = 26/240 (10%), Positives = 75/240 (31%), Gaps = 4/240 (1%)
Query: 804 QQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVD 863
+++ + +P L+ G G GKT + + + + I I+ F + ++
Sbjct: 20 EELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELV 79
Query: 864 TIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNIST 923
+ + + + +R D + VI+ + + +
Sbjct: 80 KLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETK 139
Query: 924 RQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQI--KTMFSVIGNHRKKT 981
+ L E + P +P ++ + + ++
Sbjct: 140 MYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSD 199
Query: 982 RKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDI 1041
++ RE +KL E + ++ ++++ V +++I + N + +
Sbjct: 200 IRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKE--IQPTLERIEQKMVLNKHQET 257
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 12/80 (15%), Positives = 22/80 (27%)
Query: 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISI 276
T + I++ G + GK+ I R L + P++ E + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 277 KQTREFEINKVRTRAEDAAE 296
AE
Sbjct: 62 VSIGPEFRALEGAWAEGVVA 81
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 45.0 bits (105), Expect = 1e-05
Identities = 12/80 (15%), Positives = 22/80 (27%)
Query: 815 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISI 874
T + I++ G + GK+ I R L + P++ E + +
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 875 KQTREFEINKVRTRAEDAAE 894
AE
Sbjct: 62 VSIGPEFRALEGAWAEGVVA 81
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 43.5 bits (102), Expect = 1e-04
Identities = 31/271 (11%), Positives = 71/271 (26%), Gaps = 27/271 (9%)
Query: 148 FAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQ- 206
A +N + + K VS + + R + L
Sbjct: 51 VESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCS 110
Query: 207 -QITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA--PFIKIEATKFTEVGYVGRD 263
+ +++ G GKT + L + + + + GY D
Sbjct: 111 PVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNT-D 168
Query: 264 VDTIIRDLIDISIKQTREF--EINKV----RTRAEDAAEDRVIDILVPSKEKSNLDTDF- 316
+ + D+ ++ + V R L+
Sbjct: 169 FNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCV 228
Query: 317 ----NNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMS--PPGMEEMTAQIK 370
N +N I + + D ++++ G++ +T ++
Sbjct: 229 VIASLNPTSNDDK--IVELVKEASRSN-STSLVISTDVDGEWQVLTRTGEGLQRLTHTLQ 285
Query: 371 TMFS-----VIGNHRKKTRKIKIREAIKLLI 396
T + I ++ K +AI+ +I
Sbjct: 286 TSYGEHSVLTIHTSKQSGGKQASGKAIQTVI 316
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 43.5 bits (102), Expect = 1e-04
Identities = 31/271 (11%), Positives = 71/271 (26%), Gaps = 27/271 (9%)
Query: 746 FAQSAAKALQENTELMPDEIIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQ- 804
A +N + + K VS + + R + L
Sbjct: 51 VESGDAIVFDKNAQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCS 110
Query: 805 -QITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA--PFIKIEATKFTEVGYVGRD 861
+ +++ G GKT + L + + + + GY D
Sbjct: 111 PVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNT-D 168
Query: 862 VDTIIRDLIDISIKQTREF--EINKV----RTRAEDAAEDRVIDILVPSKEKSNLDTDF- 914
+ + D+ ++ + V R L+
Sbjct: 169 FNVFVDDIARAMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCV 228
Query: 915 ----NNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMS--PPGMEEMTAQIK 968
N +N I + + D ++++ G++ +T ++
Sbjct: 229 VIASLNPTSNDDK--IVELVKEASRSN-STSLVISTDVDGEWQVLTRTGEGLQRLTHTLQ 285
Query: 969 TMFS-----VIGNHRKKTRKIKIREAIKLLI 994
T + I ++ K +AI+ +I
Sbjct: 286 TSYGEHSVLTIHTSKQSGGKQASGKAIQTVI 316
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 263
+NI ++GP G GK+ I R+LA+ N F + G
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGW 47
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRD 861
+NI ++GP G GK+ I R+LA+ N F + G
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGW 47
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247
KNI+ IG G GK+ +AR LAK + F+
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845
KNI+ IG G GK+ +AR LAK + F+
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254
+ I M+G G G T + R LA+ F+ +
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQ 38
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Score = 40.7 bits (94), Expect = 3e-04
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852
+ I M+G G G T + R LA+ F+ +
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQ 38
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250
+++G G GK+ I RRLAK + +
Sbjct: 2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 40.4 bits (93), Expect = 3e-04
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848
+++G G GK+ I RRLAK + +
Sbjct: 2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 26/257 (10%), Positives = 63/257 (24%), Gaps = 16/257 (6%)
Query: 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIAR----RL 238
K + + + + + I L N R ++G G GKT R
Sbjct: 16 KRLPHREQQLQQLDILLGNWLRNP--------GHHYPRATLLGRPGTGKTVTLRKLWELY 67
Query: 239 AKLSNAPFIKIEATKFTE--VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 296
+ A F+ I + I + + + +
Sbjct: 68 KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 127
Query: 297 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEI 356
+ D + + + E + + +I + ++ I
Sbjct: 128 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 187
Query: 357 MSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINN 416
P ++ I + G + ++ + + D + AI+
Sbjct: 188 RFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD--ARLAIDI 245
Query: 417 VEQNGIIFLDEIDKITT 433
+ ++ K
Sbjct: 246 LYRSAYAAQQNGRKHIA 262
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 41.3 bits (95), Expect = 4e-04
Identities = 26/257 (10%), Positives = 63/257 (24%), Gaps = 16/257 (6%)
Query: 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIAR----RL 836
K + + + + + I L N R ++G G GKT R
Sbjct: 16 KRLPHREQQLQQLDILLGNWLRNP--------GHHYPRATLLGRPGTGKTVTLRKLWELY 67
Query: 837 AKLSNAPFIKIEATKFTE--VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 894
+ A F+ I + I + + + +
Sbjct: 68 KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 127
Query: 895 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEI 954
+ D + + + E + + +I + ++ I
Sbjct: 128 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 187
Query: 955 MSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINN 1014
P ++ I + G + ++ + + D + AI+
Sbjct: 188 RFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD--ARLAIDI 245
Query: 1015 VEQNGIIFLDEIDKITT 1031
+ ++ K
Sbjct: 246 LYRSAYAAQQNGRKHIA 262
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 40.5 bits (93), Expect = 8e-04
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 214 QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 273
+ + L++G GK+ I + N P+I ++ KF E Y+ + +L
Sbjct: 25 KGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI--SYKDFLLELQK 82
Query: 274 ISIKQTREFE 283
K +
Sbjct: 83 EINKLVKRLP 92
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 40.5 bits (93), Expect = 8e-04
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 812 QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 871
+ + L++G GK+ I + N P+I ++ KF E Y+ + +L
Sbjct: 25 KGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI--SYKDFLLELQK 82
Query: 872 ISIKQTREFE 881
K +
Sbjct: 83 EINKLVKRLP 92
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 40.3 bits (93), Expect = 8e-04
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 185 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA 244
IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 11 FIGQENVKKKLSLALEAAKMRGEV---------LDHVLLAGPPGLGKTTLAHIIASELQT 61
Query: 245 PFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILV 304
+ G + + T + + I + V A ED IDI++
Sbjct: 62 NIHVTSGPVLVKQGDM-AAILTSLERGDVLFIDEIHRLN-KAVEELLYSAIEDFQIDIMI 119
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 40.3 bits (93), Expect = 8e-04
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 11/120 (9%)
Query: 783 VIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNA 842
IGQ K+ +++AL R ++ ++L+ GP G+GKT +A +A
Sbjct: 11 FIGQENVKKKLSLALEAAKMRGEV---------LDHVLLAGPPGLGKTTLAHIIASELQT 61
Query: 843 PFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILV 902
+ G + + T + + I + V A ED IDI++
Sbjct: 62 NIHVTSGPVLVKQGDM-AAILTSLERGDVLFIDEIHRLN-KAVEELLYSAIEDFQIDIMI 119
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 40.0 bits (93), Expect = 0.001
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 273
+ L GP GKT +A L +L + + +G +D + +
Sbjct: 154 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQ-FLVVFE 208
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 40.0 bits (93), Expect = 0.001
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 871
+ L GP GKT +A L +L + + +G +D + +
Sbjct: 154 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQ-FLVVFE 208
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Score = 38.4 bits (88), Expect = 0.002
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 1/143 (0%)
Query: 214 QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 273
++ NIL+ G G GKT +A +A + E + + +I+
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE 60
Query: 274 ISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRL 333
+ + + + D L P + ++ + + R R+
Sbjct: 61 EKDEDRLLDFMEPIMVSRGNHVVDYHSSELFP-ERWFHMVVVLHTSTEVLFERLTKRQYS 119
Query: 334 REGALDNKEIEIELNDTGPHMEI 356
+N E EI+ +
Sbjct: 120 EAKRAENMEAEIQCICEEEARDA 142
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Score = 38.4 bits (88), Expect = 0.002
Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 1/143 (0%)
Query: 812 QEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLID 871
++ NIL+ G G GKT +A +A + E + + +I+
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE 60
Query: 872 ISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRL 931
+ + + + D L P + ++ + + R R+
Sbjct: 61 EKDEDRLLDFMEPIMVSRGNHVVDYHSSELFP-ERWFHMVVVLHTSTEVLFERLTKRQYS 119
Query: 932 REGALDNKEIEIELNDTGPHMEI 954
+N E EI+ +
Sbjct: 120 EAKRAENMEAEIQCICEEEARDA 142
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.4 bits (88), Expect = 0.002
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 215 EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 256
++ +L+ G G GK+ IA LA L P + +
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 42
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.4 bits (88), Expect = 0.002
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 813 EITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 854
++ +L+ G G GK+ IA LA L P + +
Sbjct: 1 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 42
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.003
Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 6/137 (4%)
Query: 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQT 279
NIL+ G GVGKT + + LA S +I + E Y G D + + +
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD-----EEYDCPILDED 60
Query: 280 REFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 339
R + + R D P + ++ + N + R R + D
Sbjct: 61 RVVDELDNQMREGGVIVDYHGCDFFP-ERWFHIVFVLRTDTNVLYERLETRGYNEKKLTD 119
Query: 340 NKEIEIELNDTGPHMEI 356
N + EI
Sbjct: 120 NIQCEIFQVLYEEATAS 136
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.003
Identities = 28/137 (20%), Positives = 45/137 (32%), Gaps = 6/137 (4%)
Query: 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQT 877
NIL+ G GVGKT + + LA S +I + E Y G D + + +
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYD-----EEYDCPILDED 60
Query: 878 REFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALD 937
R + + R D P + ++ + N + R R + D
Sbjct: 61 RVVDELDNQMREGGVIVDYHGCDFFP-ERWFHIVFVLRTDTNVLYERLETRGYNEKKLTD 119
Query: 938 NKEIEIELNDTGPHMEI 954
N + EI
Sbjct: 120 NIQCEIFQVLYEEATAS 136
|
| >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.8 bits (87), Expect = 0.004
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 19 QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLD 78
T + + + + L + +VT + S +K+ KL +A +AG TADA L++
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVA-VAGLTADAEILIN 88
Query: 79 FF--EANLEKHQGNLMRASVELAKEWRN 104
A N L + +
Sbjct: 89 TARIHAQNYLKTYNEDIPVEILVRRLSD 116
|
| >d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ntn hydrolase-like superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) family: Proteasome subunits domain: Proteasome alpha subunit (non-catalytic) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.8 bits (87), Expect = 0.004
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 617 QGTTILSVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLD 676
T + + + + L + +VT + S +K+ KL +A +AG TADA L++
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVA-VAGLTADAEILIN 88
Query: 677 FF--EANLEKHQGNLMRASVELAKEWRN 702
A N L + +
Sbjct: 89 TARIHAQNYLKTYNEDIPVEILVRRLSD 116
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1165 | |||
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 100.0 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 100.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 100.0 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 100.0 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 100.0 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 100.0 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 100.0 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.97 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.95 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.94 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.93 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.92 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.91 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 99.85 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 99.83 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 99.82 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 99.81 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.78 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.76 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.74 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.74 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.74 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.72 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.71 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.7 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.69 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.67 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.64 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.64 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.63 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.61 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.6 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.59 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.57 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.57 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.57 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.56 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.52 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.49 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.47 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.47 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.46 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.42 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.37 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.36 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.35 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.33 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.31 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.25 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.23 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.2 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.11 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.11 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.01 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 98.93 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 98.79 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 98.75 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 98.59 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 98.57 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 98.57 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.33 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 98.28 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.22 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.16 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 98.05 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.65 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.64 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.63 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.62 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.41 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.39 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.38 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.38 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.37 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.33 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.32 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.31 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.29 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.22 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.21 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.2 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.14 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.13 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.07 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.06 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.02 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.97 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.97 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.96 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.95 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.93 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.91 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.91 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.9 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.88 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.83 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.82 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.82 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.79 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.78 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.77 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.74 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.73 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.71 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.69 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.67 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.66 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.65 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.64 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.64 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.63 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.62 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.62 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.62 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.6 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.59 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.56 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 96.43 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.42 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.32 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 96.31 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.24 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.21 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.17 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.16 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.15 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.13 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.07 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.99 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.8 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.74 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.56 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.54 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.43 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.38 | |
| d1qzma_ | 94 | ATPase domain of protease Lon (La) {Escherichia co | 95.16 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.09 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.88 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.57 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.52 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.43 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.38 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.35 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.34 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.34 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.34 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.24 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.14 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.11 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.05 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.03 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.88 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 93.77 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.59 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.43 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 93.35 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.34 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.17 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.71 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.68 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.6 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.29 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.97 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.88 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 91.75 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 91.75 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.7 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.7 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.52 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 91.33 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 91.16 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.01 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.99 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 90.92 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.88 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 90.87 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 90.77 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.74 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.62 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.59 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 90.26 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.14 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.88 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 89.85 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.72 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.55 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 89.51 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 89.48 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 89.41 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 89.33 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 89.26 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.25 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 89.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.16 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 89.11 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 89.09 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 89.08 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.06 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.04 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.02 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 89.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 88.98 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 88.97 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 88.96 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.73 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.71 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 88.69 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 88.54 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.36 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 88.36 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 88.34 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 88.26 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.2 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 88.16 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 88.13 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 88.06 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.05 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 88.0 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.98 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 87.97 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 87.93 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 87.93 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 87.89 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 87.88 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 87.84 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.82 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 87.72 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 87.72 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 87.7 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 87.67 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.57 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 87.55 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 87.46 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.45 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 87.4 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 87.38 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 87.32 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 87.27 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.24 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 87.22 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 87.21 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 87.15 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 87.1 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.98 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 86.92 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.85 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 86.82 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 86.8 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 86.8 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 86.72 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 86.68 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 86.67 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 86.64 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 86.62 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 86.62 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 86.56 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 86.55 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 86.5 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.41 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.33 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 86.31 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 86.3 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 86.27 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 86.17 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 86.12 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 86.04 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 86.0 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 85.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 85.96 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 85.94 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.87 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 85.85 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 85.8 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 85.79 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.63 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 85.61 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 85.59 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 85.47 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 85.41 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.39 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 85.39 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 85.35 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 85.34 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 85.34 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 85.3 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 85.22 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 85.19 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 85.09 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 85.03 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 85.02 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 85.02 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 85.02 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 84.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 84.96 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.95 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 84.92 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 84.88 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 84.78 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.66 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 84.61 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 84.61 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.6 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 84.54 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 84.41 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 84.32 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 84.31 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.24 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 84.19 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.16 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 84.14 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 84.12 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 84.1 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.01 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 83.87 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 83.86 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 83.76 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 83.76 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 83.75 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 83.73 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.71 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 83.7 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 83.67 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 83.66 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 83.59 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.53 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 83.53 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 83.51 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 83.43 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 83.39 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.38 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.36 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 83.29 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 83.26 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 83.13 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 83.11 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 83.07 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 83.05 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 83.01 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 82.94 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 82.89 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 82.87 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.87 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 82.8 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 82.76 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 82.76 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 82.69 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 82.59 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 82.49 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 82.48 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 82.46 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.44 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 82.44 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 82.36 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 82.36 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.31 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.17 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 82.13 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.09 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 81.95 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 81.95 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.85 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 81.83 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.82 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 81.8 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 81.77 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 81.71 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 81.68 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.68 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 81.62 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 81.59 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 81.59 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 81.56 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 81.38 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 81.33 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 81.26 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 81.2 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 81.17 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 81.13 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 81.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 80.85 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 80.8 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 80.76 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 80.64 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 80.61 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 80.52 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 80.41 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 80.36 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 80.28 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 80.19 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 80.13 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 80.13 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 80.1 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 80.08 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 80.07 |
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=3.5e-63 Score=583.35 Aligned_cols=437 Identities=61% Similarity=0.960 Sum_probs=317.5
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
.++|.++.++|++.|+||++||+.|+.+++++|+|..+....+....|+|+||+||||||||+||+.||+.++.||+.+|
T Consensus 2 ~ltP~~i~~~Ld~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~d 81 (443)
T d1g41a_ 2 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81 (443)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 46899999999999999999999999999999999999888887777899999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHH
Q psy2392 251 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 330 (1165)
Q Consensus 251 ~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1165)
|+.|++.||+|.+.+.++++|++.+.......+...+...+.+.++.++++.++.......... ........+++..+
T Consensus 82 aT~fTeaGYvG~DVesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~--~~~~~~~~~~~~~~ 159 (443)
T d1g41a_ 82 ATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEV--ENHDSHSSTRQAFR 159 (443)
T ss_dssp GGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred cceeeecceeecchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccc--ccccchhhhhHHHH
Confidence 9999999999999999999999999888888888888888889999999999987543210000 00112356788899
Q ss_pred HHhhcCCCCCcEEEEEecCCC-CcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHH
Q psy2392 331 KRLREGALDNKEIEIELNDTG-PHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEI 409 (1165)
Q Consensus 331 ~~~~~g~l~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (1165)
..++.|++|++.+.+..+... .....++.+++......+..++++.++.+.+.+++.++++++.+...+++++.+...+
T Consensus 160 ~~L~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~i 239 (443)
T d1g41a_ 160 KKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEEL 239 (443)
T ss_dssp -----------------------------------------------------------------CCGGGSCSSCCHHHH
T ss_pred HHHhcCCccccccccccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhHH
Confidence 999999999999999877653 3334444455555566788889999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCC
Q psy2392 410 QQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDL 489 (1165)
Q Consensus 410 ~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l 489 (1165)
...|+..+.+.+++|+||||+++..... ++.+++++|+|+++|+++||++++++||.+.|+|++||++|+|+..+|++|
T Consensus 240 ~~~ai~~v~~~~~~~~dei~k~~~~~~~-~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gl 318 (443)
T d1g41a_ 240 KQKAIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDL 318 (443)
T ss_dssp HHHHHHHHHHHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGS
T ss_pred HHHHHHHHhccCccccchhhhhhhcccC-CCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccc
Confidence 9999999999999999999999988664 678999999999999999999999999999999999999999999999999
Q ss_pred chhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHH
Q psy2392 490 IPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTA 569 (1165)
Q Consensus 490 ~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ 569 (1165)
+|||+||||++|.|++|++++|.+||++|++++++||+++|+.+|++|.||++|++.||+.|++.|...+++|||+|+++
T Consensus 319 iPEliGRlPi~v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i 398 (443)
T d1g41a_ 319 IPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTV 398 (443)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHH
T ss_pred hhhhccceEEEEEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 570 MEKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 570 ie~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
+|++|++++|++|+.. +.||.++|++.+.+++++.||+|||
T Consensus 399 ~E~~l~~~~f~~p~~~~~~v~Id~~~v~~~l~~~~~~~dl~k~i 442 (443)
T d1g41a_ 399 MERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFI 442 (443)
T ss_dssp HHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCCEEEECHHHHHhhhhchhhcCCccccc
Confidence 9999999999999864 8999999999999999999999997
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=2.8e-60 Score=558.64 Aligned_cols=390 Identities=62% Similarity=0.962 Sum_probs=273.4
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|.++.++|+++|+||++||+.+..++++||+|..+....+....|+|+||+||||||||+||+.||+.++.||+.+|
T Consensus 2 ~ltP~~i~~~Ld~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~d 81 (443)
T d1g41a_ 2 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81 (443)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 46899999999999999999999999999999999999888887777899999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCc--ccchhhHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE--NNNISTRQI 926 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~--~~~~~~r~~ 926 (1165)
|+.|++.||+|.+.++++++++..|...+.......+.....+.+..++++.|+....+. ..+.. .....+++.
T Consensus 82 aT~fTeaGYvG~DVesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~----~~~~~~~~~~~~~~~~ 157 (443)
T d1g41a_ 82 ATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQ----WGEVENHDSHSSTRQA 157 (443)
T ss_dssp GGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred cceeeecceeecchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----ccccccccchhhhhHH
Confidence 999999999999999999999998887777777778888888888999999998753211 01111 125677899
Q ss_pred HHHhhccCCCCCeEEEEEecCCCC-cccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHH
Q psy2392 927 FRKRLREGALDNKEIEIELNDTGP-HMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNED 1005 (1165)
Q Consensus 927 ~~~~l~~g~ld~r~v~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~ 1005 (1165)
++.+|++|++|++.+.++.+.... ...++++++++.....+..+++...+.+++.+++++++++++|...+.++.++.+
T Consensus 158 ~~~~L~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~ 237 (443)
T d1g41a_ 158 FRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPE 237 (443)
T ss_dssp -------------------------------------------------------------------CCGGGSCSSCCHH
T ss_pred HHHHHhcCCccccccccccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchh
Confidence 999999999999999988776543 4555666677777777888888888889999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC
Q psy2392 1006 EIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS 1085 (1165)
Q Consensus 1006 ~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~ 1085 (1165)
.+...|+..+++.|++|+|||||++..... ++.+++++|+|++|||++||++++|+||.++|+|++|||+|+||..+|+
T Consensus 238 ~i~~~ai~~v~~~~~~~~dei~k~~~~~~~-~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~ 316 (443)
T d1g41a_ 238 ELKQKAIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS 316 (443)
T ss_dssp HHHHHHHHHHHHHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG
T ss_pred HHHHHHHHHHhccCccccchhhhhhhcccC-CCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccc
Confidence 999999999999999999999999988654 6789999999999999999999999999999999999999999999999
Q ss_pred CCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1086 DLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1086 dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
+|+|||+||||++|.|.+|++++|++||+||+|++++||+++|+++||+|.||++|++.||+.|++.|..++|+|||.
T Consensus 317 gliPEliGRlPi~v~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~ 394 (443)
T d1g41a_ 317 DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARR 394 (443)
T ss_dssp GSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGH
T ss_pred cchhhhccceEEEEEccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999994
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=5.1e-46 Score=427.30 Aligned_cols=289 Identities=37% Similarity=0.591 Sum_probs=233.3
Q ss_pred hHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCC----------------CccCCcEEEEEcCCCCCchHHH
Q psy2392 172 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQ----------------QEITPKNILMIGPTGVGKTEIA 235 (1165)
Q Consensus 172 ~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~----------------~~~~~~~~Ll~GPpG~GKT~lA 235 (1165)
.+|.++.+.|++.|+||++||++++.|++++|+|..+...++ +..++++|||+||||||||++|
T Consensus 6 ~tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElA 85 (364)
T d1um8a_ 6 PAPKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMA 85 (364)
T ss_dssp CCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHH
Confidence 489999999999999999999999999999999865432211 1224599999999999999999
Q ss_pred HHHHHHhCCCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccc
Q psy2392 236 RRLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 315 (1165)
Q Consensus 236 k~lA~~l~~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 315 (1165)
|+||+.++.+|+++||++|+++||+|++.++.+++++..+..
T Consensus 86 k~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~-------------------------------------- 127 (364)
T d1um8a_ 86 QTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDW-------------------------------------- 127 (364)
T ss_dssp HHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTT--------------------------------------
T ss_pred HHHHhhcccceeehhhhhcccchhhHhhhccchhhhhhhchh--------------------------------------
Confidence 999999999999999999999999999999999999877200
Q ss_pred cCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHH
Q psy2392 316 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 395 (1165)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (1165)
+
T Consensus 128 --------------------------------------~----------------------------------------- 128 (364)
T d1um8a_ 128 --------------------------------------N----------------------------------------- 128 (364)
T ss_dssp --------------------------------------C-----------------------------------------
T ss_pred --------------------------------------H-----------------------------------------
Confidence 0
Q ss_pred HHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeee-----------
Q psy2392 396 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNT----------- 463 (1165)
Q Consensus 396 ~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~----------- 463 (1165)
+. .+++||||+|||||+++.+...+ ..|.++++||+.||+++||+.+++
T Consensus 129 ------------------v~-~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~ 189 (364)
T d1um8a_ 129 ------------------VQ-KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEG 189 (364)
T ss_dssp ------------------HH-HHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC------------
T ss_pred ------------------HH-HhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcc
Confidence 00 12789999999999998765433 578899999999999999877643
Q ss_pred eceeecCceEEEEEeCCcccC-------------------------------------CCCCCchhhhCCCCeeEecCCC
Q psy2392 464 KYGIIKTDHILFIASGAFHLA-------------------------------------KPSDLIPELQGRFPIRVELDSL 506 (1165)
Q Consensus 464 ~~~~~~t~~ilfI~~gaf~~~-------------------------------------~p~~l~pel~~R~~~~v~~~~L 506 (1165)
+...++|.|++|+++|+|... .+++|+|||+||||++|.|++|
T Consensus 190 ~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L 269 (364)
T d1um8a_ 190 NFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSI 269 (364)
T ss_dssp ---CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCC
T ss_pred eeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhh
Confidence 234889999999999998510 1356999999999999999999
Q ss_pred CHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccCCCe-
Q psy2392 507 SISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSNNIS- 585 (1165)
Q Consensus 507 ~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~~~~- 585 (1165)
+++++.+|++++.+.+++|++.+++.+|+.|.|+++|+++||+.||+ +++|||+|+++||+++++++|+.|+..
T Consensus 270 ~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d-----~~~GAR~L~riie~~l~~~~f~~p~~~~ 344 (364)
T d1um8a_ 270 SLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE-----RKTGARGLRAIIEDFCLDIMFDLPKLKG 344 (364)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH-----TTCTGGGHHHHHHHHHHHHHHTGGGGTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhccC-----CCCCchHHHHHHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999999999999999999999999 689999999999999999999998765
Q ss_pred --eEEcccccccccccCc
Q psy2392 586 --LLVDADYVNSRLGDLS 601 (1165)
Q Consensus 586 --~~i~~~~v~~~~~~~~ 601 (1165)
+.||+++|+..+++++
T Consensus 345 ~~v~I~~~~V~~~~~~~~ 362 (364)
T d1um8a_ 345 SEVRITKDCVLKQAEPLI 362 (364)
T ss_dssp SEEEECHHHHTTSSCCEE
T ss_pred CEEEECHHHhCCCCCCee
Confidence 8999999999887654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=7.9e-44 Score=401.41 Aligned_cols=304 Identities=65% Similarity=1.031 Sum_probs=271.4
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+++|+++.+.|++.|+||++||+.|..+++++|+|.++..+.++..+++++||+||||||||+||+++|+.++.+|++++
T Consensus 2 ~~~p~~i~~~L~~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~ 81 (309)
T d1ofha_ 2 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81 (309)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCHHHHHHHhcCcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhccc
Confidence 46899999999999999999999999999999999988877765556799999999999999999999999999999999
Q ss_pred ccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHH
Q psy2392 251 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 330 (1165)
Q Consensus 251 ~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1165)
|++|++.+|++...+..++.+|..+.
T Consensus 82 ~s~~~~~~~~~~~~~~~~~~~f~~a~------------------------------------------------------ 107 (309)
T d1ofha_ 82 ATKFTEVGYVGKEVDSIIRDLTDSAG------------------------------------------------------ 107 (309)
T ss_dssp GGGGSSCCSGGGSTTHHHHHHHHTTT------------------------------------------------------
T ss_pred ccccccceeEeeeccccccccchhhh------------------------------------------------------
Confidence 99999888776665777777776520
Q ss_pred HHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHH
Q psy2392 331 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 410 (1165)
Q Consensus 331 ~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (1165)
+
T Consensus 108 -----~-------------------------------------------------------------------------- 108 (309)
T d1ofha_ 108 -----G-------------------------------------------------------------------------- 108 (309)
T ss_dssp -----T--------------------------------------------------------------------------
T ss_pred -----c--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 411 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 411 ~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
+.....+++|||||||||++++..+ ...+++++|++++||.++||..+++++..++|+|++|||+|+|...+|.+++
T Consensus 109 --~~~~~~~~~IIf~DEIdki~~~~~~-~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~ 185 (309)
T d1ofha_ 109 --AIDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLI 185 (309)
T ss_dssp --CHHHHHHHCEEEEECGGGGSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSC
T ss_pred --ccccccCCceEEehhhhhhhhhccC-cccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccch
Confidence 0000114689999999999987665 4668889999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
|+|+|||+.++.|.+|+.+++.+|++.....+..++...+...+..+.+++.+...++..++...+...++|||.|++++
T Consensus 186 p~l~~R~~~~i~~~~~~~~~~~~Il~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaR~L~~~i 265 (309)
T d1ofha_ 186 PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVM 265 (309)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHH
T ss_pred hhhhhhhheeeeccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHhhcchhcCchHHHHHH
Confidence 99999999999999999999999999888888888888899999999999999999999998887777899999999999
Q ss_pred HHHHHHhhcccCCCe---eEEcccccccccccCcccccccccc
Q psy2392 571 EKLLEEVSFNSNNIS---LLVDADYVNSRLGDLSINEDLSRYD 610 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~---~~i~~~~v~~~~~~~~~~~dls~~i 610 (1165)
|+++.+++|..+... +.|+.+++.+.+++++.+.|++||+
T Consensus 266 e~i~~~~~~~~~~~~~~~v~i~~~~v~~~l~~~~~~~d~~kf~ 308 (309)
T d1ofha_ 266 ERLMDKISFSASDMNGQTVNIDAAYVADALGEVVENEDLSRFI 308 (309)
T ss_dssp HHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSSCCCCTTSC
T ss_pred HHHHHHHHccccccCCCEEEECHHHHHHhcCCcccccchhhhc
Confidence 999999999887654 8899999999999999999999997
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=3.1e-40 Score=378.94 Aligned_cols=252 Identities=40% Similarity=0.621 Sum_probs=198.6
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCC----------------CCCCCceEEEEccCCCChhHHHH
Q psy2392 771 VIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQ----------------QEITPKNILMIGPTGVGKTEIAR 834 (1165)
Q Consensus 771 ~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~----------------~~~~~~~iLL~GPpG~GKT~lAk 834 (1165)
+|.++.+.|+++|+||++||+.++.+++++|+|......++ +..++++|||+||||||||++||
T Consensus 7 tP~ei~~~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk 86 (364)
T d1um8a_ 7 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ 86 (364)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHH
Confidence 79999999999999999999999999999988754322211 12347999999999999999999
Q ss_pred HHHHHcCCCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCcccc
Q psy2392 835 RLAKLSNAPFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDF 914 (1165)
Q Consensus 835 ~lA~~l~~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~ 914 (1165)
+||+.++.||+++||++|+++||+|++.++.+++++..+...
T Consensus 87 ~LA~~~~~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~-------------------------------------- 128 (364)
T d1um8a_ 87 TLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWN-------------------------------------- 128 (364)
T ss_dssp HHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTC--------------------------------------
T ss_pred HHHhhcccceeehhhhhcccchhhHhhhccchhhhhhhchhH--------------------------------------
Confidence 999999999999999999999999999999998886544000
Q ss_pred CCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHH
Q psy2392 915 NNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLI 994 (1165)
Q Consensus 915 ~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~ 994 (1165)
T Consensus 129 -------------------------------------------------------------------------------- 128 (364)
T d1um8a_ 129 -------------------------------------------------------------------------------- 128 (364)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCC-CCCCCccchhhhhhccccccCcccee-----------e
Q psy2392 995 DEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQ-NNNTDISRAGVQRDLLPLVEGTTVNT-----------K 1062 (1165)
Q Consensus 995 ~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~-~~~~~~~~~gvq~~lL~~~Eg~~v~~-----------k 1062 (1165)
+ +.+ +.||||+|||||++..+.. ....|+++++||+.||+++||+.+++ .
T Consensus 129 ------------v-~~~-----~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~~~~~~gr~~~~~~ 190 (364)
T d1um8a_ 129 ------------V-QKA-----QKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGN 190 (364)
T ss_dssp ------------H-HHH-----TTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC-------------
T ss_pred ------------H-HHh-----hcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCceeccCCCCCCcCCcce
Confidence 1 222 7899999999999987543 23467899999999999999877643 2
Q ss_pred eeeccCceEEEEecCCCCC-------------------------------------CCCCCCchhhhccCCeEEEcCCCC
Q psy2392 1063 YGIIKTDHILFIASGAFHL-------------------------------------AKPSDLIPELQGRFPIRVELDSLS 1105 (1165)
Q Consensus 1063 ~~~~~t~~ilfI~~gaf~~-------------------------------------~~p~dl~pel~gR~~i~v~l~~l~ 1105 (1165)
...++|.|++|+++|+|.. ..+++|+|||+||||++|.|.+|+
T Consensus 191 ~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~gRi~~iv~f~~L~ 270 (364)
T d1um8a_ 191 FIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSIS 270 (364)
T ss_dssp --CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCC
T ss_pred eEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHHHHHhcchhhHhhhh
Confidence 4589999999999999951 014569999999999999999999
Q ss_pred HHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1106 ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1106 ~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
++++.+||++|.+++++||+.+|+.+|++|+|||+|+++||+.||+. |+|||.
T Consensus 271 ~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~-----~~GAR~ 323 (364)
T d1um8a_ 271 LEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALER-----KTGARG 323 (364)
T ss_dssp HHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHT-----TCTGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhccCC-----CCCchH
Confidence 99999999999999999999999999999999999999999999997 777774
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=100.00 E-value=1.6e-38 Score=357.90 Aligned_cols=259 Identities=67% Similarity=1.032 Sum_probs=230.5
Q ss_pred hhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 769 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 769 ~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|+++.+.|++.|+||++|++.+..++.++|++.++..+.++..+++++||+||||||||++|+++|+.++.+|+.++
T Consensus 2 ~~~p~~i~~~L~~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~ 81 (309)
T d1ofha_ 2 EMTPREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 81 (309)
T ss_dssp CCCHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCHHHHHHHhcCcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhccc
Confidence 46899999999999999999999999999999999888776654445799999999999999999999999999999999
Q ss_pred cCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHH
Q psy2392 849 ATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFR 928 (1165)
Q Consensus 849 ~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~ 928 (1165)
+++|++.+|++...+..++.+|..|...
T Consensus 82 ~s~~~~~~~~~~~~~~~~~~~f~~a~~~---------------------------------------------------- 109 (309)
T d1ofha_ 82 ATKFTEVGYVGKEVDSIIRDLTDSAGGA---------------------------------------------------- 109 (309)
T ss_dssp GGGGSSCCSGGGSTTHHHHHHHHTTTTC----------------------------------------------------
T ss_pred ccccccceeEeeeccccccccchhhhcc----------------------------------------------------
Confidence 9999998877666677788877554111
Q ss_pred HhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHH
Q psy2392 929 KRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQ 1008 (1165)
Q Consensus 929 ~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~ 1008 (1165)
T Consensus 110 -------------------------------------------------------------------------------- 109 (309)
T d1ofha_ 110 -------------------------------------------------------------------------------- 109 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCc
Q psy2392 1009 QKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLI 1088 (1165)
Q Consensus 1009 ~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~ 1088 (1165)
.....+++|||||||||++....+ .+.+++.+|+|++||.++||..++.++..+.|+|++|||+|+|...+|+++.
T Consensus 110 ---~~~~~~~~IIf~DEIdki~~~~~~-~~~~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ga~~~~~~~~~~ 185 (309)
T d1ofha_ 110 ---IDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLI 185 (309)
T ss_dssp ---HHHHHHHCEEEEECGGGGSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSC
T ss_pred ---cccccCCceEEehhhhhhhhhccC-cccchhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEeccchhhcCcccch
Confidence 000114689999999999976543 5678899999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhccCcCCceeeccc
Q psy2392 1089 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIVIIY 1163 (1165)
Q Consensus 1089 pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~~~~~~nigar~ 1163 (1165)
|+|+|||+.++.|.+|+.+++.+|++...+.+..++...+..++..+.+++++....+..++...+.+.|.|||.
T Consensus 186 p~l~~R~~~~i~~~~~~~~~~~~Il~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GaR~ 260 (309)
T d1ofha_ 186 PELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARR 260 (309)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHH
T ss_pred hhhhhhhheeeeccCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHHHHHHHHhhcchhcCchH
Confidence 999999999999999999999999999888899999999999999999999999999999999988889999984
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-32 Score=308.25 Aligned_cols=238 Identities=23% Similarity=0.378 Sum_probs=201.5
Q ss_pred hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 171 SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 171 ~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
..++.++.+.|++.|+||++|++.|+.++... +.++.++.+|. +++||+||||||||+||++||+.++.+|+++|
T Consensus 10 ~~~l~~l~~~L~~~viGQ~~a~~~v~~~v~~~--~~~l~~~~~p~---~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d 84 (315)
T d1r6bx3 10 RDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA--RAGLGHEHKPV---GSFLFAGPTGVGKTEVTVQLSKALGIELLRFD 84 (315)
T ss_dssp HHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH--HTTCSCTTSCS---EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHHHHhCCeecChHHHHHHHHHHHHHH--HccCCCCCCCc---eEEEEECCCcchhHHHHHHHHhhccCCeeEec
Confidence 46789999999999999999999999999876 77787777664 79999999999999999999999999999999
Q ss_pred ccccccc-----------cccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCc
Q psy2392 251 ATKFTEV-----------GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNE 319 (1165)
Q Consensus 251 ~s~~~~~-----------GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~ 319 (1165)
|++|.++ ||+|+..++.+...+..
T Consensus 85 ~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~--------------------------------------------- 119 (315)
T d1r6bx3 85 MSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIK--------------------------------------------- 119 (315)
T ss_dssp GGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHH---------------------------------------------
T ss_pred cccccchhhhhhhcccCCCccccccCChhhHHHHh---------------------------------------------
Confidence 9999874 45555444333222211
Q ss_pred CcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHH
Q psy2392 320 NNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEE 399 (1165)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (1165)
T Consensus 120 -------------------------------------------------------------------------------- 119 (315)
T d1r6bx3 120 -------------------------------------------------------------------------------- 119 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEe
Q psy2392 400 ANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIAS 478 (1165)
Q Consensus 400 ~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~ 478 (1165)
.+++||++|||||+++. ||+.||+++|.+.++...| .++.+|.++|++
T Consensus 120 ------------------~~~~vvl~DeieKa~~~-------------V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~T 168 (315)
T d1r6bx3 120 ------------------HPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 168 (315)
T ss_dssp ------------------CSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred ------------------Cccchhhhcccccccch-------------HhhhhHHhhccceecCCCCCccCccceEEEec
Confidence 27899999999999876 8899999999888887766 789999999998
Q ss_pred CCcccCC------------C---------CCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCee
Q psy2392 479 GAFHLAK------------P---------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKI 537 (1165)
Q Consensus 479 gaf~~~~------------p---------~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l 537 (1165)
.+..... . ..|.|||++||+.+|.|.+|+.+++.+|+ ...+.++...+...++.+
T Consensus 169 snig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~----~~~l~~~~~~l~~~~i~l 244 (315)
T d1r6bx3 169 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVV----DKFIVELQVQLDQKGVSL 244 (315)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHH----HHHHHHHHHHHHHTTEEE
T ss_pred cchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHH----HHHHHHHHHHHHhcCcch
Confidence 6643111 0 12899999999999999999999999999 567788888899999999
Q ss_pred EeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 538 EFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 538 ~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.++++|+++|++.+|+ +.+|||+|+++|++.+++..
T Consensus 245 ~~~~~a~~~l~~~~yd-----~~~GaR~L~r~Ie~~i~~~l 280 (315)
T d1r6bx3 245 EVSQEARNWLAEKGYD-----RAMGARPMARVIQDNLKKPL 280 (315)
T ss_dssp EECHHHHHHHHHHHCB-----TTTBTTTHHHHHHHHHTHHH
T ss_pred hhHHHHHHHHHHhCCC-----CCCChhhHHHHHHHHHHHHH
Confidence 9999999999999998 68999999999998887653
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.97 E-value=8.5e-32 Score=303.20 Aligned_cols=246 Identities=27% Similarity=0.402 Sum_probs=199.2
Q ss_pred Cchhhhhh-hhHHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHH
Q psy2392 163 MPDEIIKK-SLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 163 ~~~~i~~~-~~~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
|.+.+.+. ..++..+++.|++.|+||++|++.|..++... +.++.++.+|. +++||+||||||||++|+.||+.
T Consensus 2 p~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~v~~~i~~~--~~~l~~~~kp~---~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 2 PVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRPI---GSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp HHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--GGGCSCSSSCS---EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHHHHHHhcCeEeCHHHHHHHHHHHHHHH--hcCCCCCCCCc---eEEEEECCCcchHHHHHHHHHHH
Confidence 44444443 37788999999999999999999999999876 67777776664 68999999999999999999999
Q ss_pred h---CCCceEEecccccc-----------ccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCC
Q psy2392 242 S---NAPFIKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSK 307 (1165)
Q Consensus 242 l---~~~~i~ld~s~~~~-----------~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 307 (1165)
+ +.+|+++||++|.+ |||+|+..++.+.+.+..
T Consensus 77 l~~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~--------------------------------- 123 (315)
T d1qvra3 77 LFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRR--------------------------------- 123 (315)
T ss_dssp HHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHH---------------------------------
T ss_pred hcCCCcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHh---------------------------------
Confidence 8 68999999999976 578887655544433322
Q ss_pred cCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceee
Q psy2392 308 EKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIK 387 (1165)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (1165)
T Consensus 124 -------------------------------------------------------------------------------- 123 (315)
T d1qvra3 124 -------------------------------------------------------------------------------- 123 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-
Q psy2392 388 IREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG- 466 (1165)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~- 466 (1165)
.+++|||+|||||+++. ||+.||+++|.+.++...|
T Consensus 124 ------------------------------~p~~Vvl~DEieK~~~~-------------v~~~ll~~l~~g~~~~~~gr 160 (315)
T d1qvra3 124 ------------------------------RPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLTDSHGR 160 (315)
T ss_dssp ------------------------------CSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEECCSSSC
T ss_pred ------------------------------CCCcEEEEehHhhcCHH-------------HHHHHHHHhccCceeCCCCc
Confidence 26899999999999876 8889999999988876554
Q ss_pred eecCceEEEEEeCCcccC----------------------CCCCCchhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHH
Q psy2392 467 IIKTDHILFIASGAFHLA----------------------KPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTK 524 (1165)
Q Consensus 467 ~~~t~~ilfI~~gaf~~~----------------------~p~~l~pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~ 524 (1165)
.++++|.+||+++++... -...|.|||++||+.++.|.+|+.+++.+|+. ..+.
T Consensus 161 ~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~----~~l~ 236 (315)
T d1qvra3 161 TVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQLS 236 (315)
T ss_dssp CEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHH----HHHH
T ss_pred EecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHH----HHHH
Confidence 689999999999886421 02359999999999999999999999999994 5566
Q ss_pred HHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 525 QYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 525 ~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
++...+...++.+.++++++++|++.+|+ +.+|||+|+++|++.+.+..
T Consensus 237 ~l~~rl~~~~i~l~i~~~~~~~L~~~~y~-----~~~GAR~L~r~Ie~~i~~~L 285 (315)
T d1qvra3 237 YLRARLAEKRISLELTEAAKDFLAERGYD-----PVFGARPLRRVIQRELETPL 285 (315)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHCB-----TTTBTSTHHHHHHHHTHHHH
T ss_pred HHHHHHHhccccccccHHHHHHHHHhCCC-----CCCCcchHHHHHHHHHHHHH
Confidence 67777889999999999999999999998 69999999999999887654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.9e-27 Score=266.13 Aligned_cols=227 Identities=22% Similarity=0.361 Sum_probs=185.2
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
+..++.++++.|++.|+||++|++.+..++... +.++.++.+| .+++||+||||||||+||++||+.++.||+++
T Consensus 9 d~~~l~~l~~~L~~~viGQ~~a~~~v~~~v~~~--~~~l~~~~~p---~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~ 83 (315)
T d1r6bx3 9 DRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA--RAGLGHEHKP---VGSFLFAGPTGVGKTEVTVQLSKALGIELLRF 83 (315)
T ss_dssp HHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHH--HTTCSCTTSC---SEEEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHhCCeecChHHHHHHHHHHHHHH--HccCCCCCCC---ceEEEEECCCcchhHHHHHHHHhhccCCeeEe
Confidence 356788999999999999999999999999876 6667665554 47899999999999999999999999999999
Q ss_pred ecCCccccc-----------ccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCC
Q psy2392 848 EATKFTEVG-----------YVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNN 916 (1165)
Q Consensus 848 ~~se~~~~G-----------yvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~ 916 (1165)
||++|.+.+ |+|+..++.+.+.+
T Consensus 84 d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~---------------------------------------------- 117 (315)
T d1r6bx3 84 DMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV---------------------------------------------- 117 (315)
T ss_dssp EGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHH----------------------------------------------
T ss_pred ccccccchhhhhhhcccCCCccccccCChhhHHH----------------------------------------------
Confidence 999998754 33333222221110
Q ss_pred cccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHH
Q psy2392 917 ENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDE 996 (1165)
Q Consensus 917 ~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~ 996 (1165)
T Consensus 118 -------------------------------------------------------------------------------- 117 (315)
T d1r6bx3 118 -------------------------------------------------------------------------------- 117 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEEEEe
Q psy2392 997 EANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIA 1075 (1165)
Q Consensus 997 ~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~ilfI~ 1075 (1165)
. ..+.+||++|||||.... ||+.||.++|.+.++...| .++..|.++|+
T Consensus 118 ------------~-----~~~~~vvl~DeieKa~~~-------------V~~~lLqild~G~ltd~~Gr~vdf~n~iiI~ 167 (315)
T d1r6bx3 118 ------------I-----KHPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTDNNGRKADFRNVVLVM 167 (315)
T ss_dssp ------------H-----HCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTTEEEECTTEEEEE
T ss_pred ------------H-----hCccchhhhcccccccch-------------HhhhhHHhhccceecCCCCCccCccceEEEe
Confidence 0 125789999999998765 9999999999988877666 68889999998
Q ss_pred cCCCCCC---CC------------------CCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCc
Q psy2392 1076 SGAFHLA---KP------------------SDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIK 1134 (1165)
Q Consensus 1076 ~gaf~~~---~p------------------~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~ 1134 (1165)
+...... +. ..|.|||++|++.+|.|.||+.+++.+|+. ..+.++...+...+++
T Consensus 168 Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~----~~l~~~~~~l~~~~i~ 243 (315)
T d1r6bx3 168 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVD----KFIVELQVQLDQKGVS 243 (315)
T ss_dssp EECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHH----HHHHHHHHHHHHTTEE
T ss_pred ccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHH----HHHHHHHHHHHhcCcc
Confidence 7553311 10 128899999999999999999999999998 7788888899999999
Q ss_pred eEeCHHHHHHHHHHHhccCcCCcee
Q psy2392 1135 IEFVDDGIQRLAEIAYCINERTENI 1159 (1165)
Q Consensus 1135 l~~~~~ai~~ia~~a~~~~~~~~ni 1159 (1165)
+.++++|+++|++.+|+.+.|++.+
T Consensus 244 l~~~~~a~~~l~~~~yd~~~GaR~L 268 (315)
T d1r6bx3 244 LEVSQEARNWLAEKGYDRAMGARPM 268 (315)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTTTH
T ss_pred hhhHHHHHHHHHHhCCCCCCChhhH
Confidence 9999999999999999985555443
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=8.5e-27 Score=262.11 Aligned_cols=228 Identities=27% Similarity=0.389 Sum_probs=181.5
Q ss_pred hhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc---CCCe
Q psy2392 768 KSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS---NAPF 844 (1165)
Q Consensus 768 ~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~f 844 (1165)
+..+...|++.|++.|+||++|++.+..++... +.++.++.+| ..++||+||||||||++|+.||+.+ +.+|
T Consensus 10 ~~~~l~~l~~~L~~~v~GQ~~ai~~v~~~i~~~--~~~l~~~~kp---~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~ 84 (315)
T d1qvra3 10 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRA--RAGLKDPNRP---IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 84 (315)
T ss_dssp HHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHH--GGGCSCSSSC---SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGE
T ss_pred HHHHHHHHHHHhcCeEeCHHHHHHHHHHHHHHH--hcCCCCCCCC---ceEEEEECCCcchHHHHHHHHHHHhcCCCcce
Confidence 466778999999999999999999999999865 6667666554 4689999999999999999999998 6889
Q ss_pred EEEecCCccc-----------ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccc
Q psy2392 845 IKIEATKFTE-----------VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTD 913 (1165)
Q Consensus 845 i~l~~se~~~-----------~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~ 913 (1165)
+++||++|.+ +||+|+..++.+.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~------------------------------------------- 121 (315)
T d1qvra3 85 IRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAV------------------------------------------- 121 (315)
T ss_dssp EEECTTTCCSSGGGGGC--------------CHHHHH-------------------------------------------
T ss_pred EEEeccccccchhhhhhcCCCCCCcCcccCChHHHHH-------------------------------------------
Confidence 9999999986 4677765433222211
Q ss_pred cCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHH
Q psy2392 914 FNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLL 993 (1165)
Q Consensus 914 ~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l 993 (1165)
T Consensus 122 -------------------------------------------------------------------------------- 121 (315)
T d1qvra3 122 -------------------------------------------------------------------------------- 121 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee-eccCceEE
Q psy2392 994 IDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHIL 1072 (1165)
Q Consensus 994 ~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~-~~~t~~il 1072 (1165)
+ ..+.+|||+|||||.... ||+.||+++|.+.++...| .+++.|.+
T Consensus 122 ---------------~-----~~p~~Vvl~DEieK~~~~-------------v~~~ll~~l~~g~~~~~~gr~v~~~~~i 168 (315)
T d1qvra3 122 ---------------R-----RRPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLTDSHGRTVDFRNTV 168 (315)
T ss_dssp ---------------H-----HCSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred ---------------H-----hCCCcEEEEehHhhcCHH-------------HHHHHHHHhccCceeCCCCcEecCcceE
Confidence 0 015789999999998765 9999999999987765545 69999999
Q ss_pred EEecCCCCCC---------C-------------CCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhh
Q psy2392 1073 FIASGAFHLA---------K-------------PSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLAT 1130 (1165)
Q Consensus 1073 fI~~gaf~~~---------~-------------p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~ 1130 (1165)
||+++++... . ...|.|||++||+.++.|.+|+.+++.+|+. ..+.+++..+..
T Consensus 169 ~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~----~~l~~l~~rl~~ 244 (315)
T d1qvra3 169 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVE----IQLSYLRARLAE 244 (315)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHH----HHHHHHHHHHHT
T ss_pred EEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHH----HHHHHHHHHHHh
Confidence 9999987421 0 1348999999999999999999999999999 566777777888
Q ss_pred cCCceEeCHHHHHHHHHHHhccCcCCceee
Q psy2392 1131 EGIKIEFVDDGIQRLAEIAYCINERTENIV 1160 (1165)
Q Consensus 1131 egv~l~~~~~ai~~ia~~a~~~~~~~~nig 1160 (1165)
.++++.++++++++|++.+|+.+.||+.+.
T Consensus 245 ~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~ 274 (315)
T d1qvra3 245 KRISLELTEAAKDFLAERGYDPVFGARPLR 274 (315)
T ss_dssp TTCEEEECHHHHHHHHHHHCBTTTBTSTHH
T ss_pred ccccccccHHHHHHHHHhCCCCCCCcchHH
Confidence 999999999999999999999966655543
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=9.5e-26 Score=246.83 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=89.9
Q ss_pred eeecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHH
Q psy2392 623 SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELA 697 (1165)
Q Consensus 623 aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS 697 (1165)
+|+||+++|||+||++||++|+++|+||.|| |+ +|. |+||+.++|..||++++..||.||+ +|++++|+||
T Consensus 142 ~L~rg~i~vIgatT~eey~~~~e~d~al~rr--F~-~I~-V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls 217 (268)
T d1r6bx2 142 LLSSGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KID-ITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELA 217 (268)
T ss_dssp CSSSCCCEEEEEECHHHHHCCCCCTTSSGGG--EE-EEE-CCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHhCCCCeEEEeCCHHHHHHHHhhcHHHHhh--hc-ccc-cCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHH
Confidence 4679999999999999999999999999999 99 676 9999999999999999999999999 9999999999
Q ss_pred HHHhcccccchHH--HHhhhhhhhhhh
Q psy2392 698 KEWRNDRTLRRLE--AMLLTANRETTL 722 (1165)
Q Consensus 698 ~ryi~~R~lPDkd--lid~a~a~~~~~ 722 (1165)
+||+++|+||||+ ++|++++..+..
T Consensus 218 ~ryi~~~~~PdKAIdllDea~a~~~~~ 244 (268)
T d1r6bx2 218 VKYINDRHLPDKAIDVIDEAGARARLM 244 (268)
T ss_dssp HHHCTTSCTTHHHHHHHHHHHHHHHHS
T ss_pred HhhccCCCCCcHHHHHHHHHHHHHHhh
Confidence 9999999999975 588888887764
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.92 E-value=4.4e-26 Score=262.15 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=89.1
Q ss_pred eeecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHH
Q psy2392 623 SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLEKHQG-----NLMRASVELA 697 (1165)
Q Consensus 623 aLaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~glk~~yE~~h~-----~aL~aav~LS 697 (1165)
+|+||+++||||||++||++ |++|+||.|| || +|. |.||+.++|+.||++++..||.||+ +||.+||+||
T Consensus 146 ~L~rg~~~~I~~tT~~ey~~-~e~d~al~rr--F~-~v~-v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls 220 (387)
T d1qvra2 146 ALARGELRLIGATTLDEYRE-IEKDPALERR--FQ-PVY-VDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLS 220 (387)
T ss_dssp HHHTTCCCEEEEECHHHHHH-HTTCTTTCSC--CC-CEE-ECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred HHhCCCcceeeecCHHHHHH-hcccHHHHHh--cc-ccc-CCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhc
Confidence 46799999999999999986 7999999999 99 677 9999999999999999999999999 9999999999
Q ss_pred HHHhcccccchHH--HHhhhhhhhhhhh
Q psy2392 698 KEWRNDRTLRRLE--AMLLTANRETTLI 723 (1165)
Q Consensus 698 ~ryi~~R~lPDkd--lid~a~a~~~~~~ 723 (1165)
+||+++|+||||+ ++|++|++.++..
T Consensus 221 ~ryi~~r~~PdKAidlld~a~a~~~i~~ 248 (387)
T d1qvra2 221 HRYITERRLPDKAIDLIDEAAARLRMAL 248 (387)
T ss_dssp HHHCCSSCTHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccChhhHHHHHHHHHHHHHhhc
Confidence 9999999999964 5899999888743
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=2.3e-26 Score=264.46 Aligned_cols=114 Identities=18% Similarity=0.254 Sum_probs=92.2
Q ss_pred CccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHHH
Q psy2392 8 SSAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANLE 85 (1165)
Q Consensus 8 ~~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~yE 85 (1165)
-|||.++ +.||++|+| +|+||+|+||||||++||++ ||+|+||.|| || +|. |+|||.++|+.||++++++||
T Consensus 128 ~~~g~~~-g~~d~a~~Lkp~L~rg~~~~I~~tT~~ey~~-~e~d~al~rr--F~-~v~-v~ep~~~~~~~il~~~~~~~e 201 (387)
T d1qvra2 128 VGAGKAE-GAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERR--FQ-PVY-VDEPTVEETISILRGLKEKYE 201 (387)
T ss_dssp -----------------HHHHHTTCCCEEEEECHHHHHH-HTTCTTTCSC--CC-CEE-ECCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCC-CcccHHHHHHHHHhCCCcceeeecCHHHHHH-hcccHHHHHh--cc-ccc-CCCCcHHHHHHHHHHHHHHHH
Confidence 3555544 469999999 99999999999999999986 7999999999 99 675 999999999999999999999
Q ss_pred HHhh-----HHHHHHHHHHHhhcCCCCchhHHH--HHhhhhhhhhhhcc
Q psy2392 86 KHQG-----NLMRASVELAKEWRNDRTLRRLEA--MLLTANRETTLIIT 127 (1165)
Q Consensus 86 ~~h~-----~al~~~v~ls~rYi~~r~lPDkal--ld~a~a~~~~~~~~ 127 (1165)
.||+ +||.+||.||+|||++|+|||||+ +|+||+++++...+
T Consensus 202 ~~h~v~~~~~ai~~~v~ls~ryi~~r~~PdKAidlld~a~a~~~i~~~s 250 (387)
T d1qvra2 202 VHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALES 250 (387)
T ss_dssp HHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHHTTTT
T ss_pred hccCCcccHHHHHHHHHhcccccccccChhhHHHHHHHHHHHHHhhccC
Confidence 9999 999999999999999999999854 99999999986433
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=2.3e-24 Score=235.77 Aligned_cols=114 Identities=20% Similarity=0.300 Sum_probs=106.4
Q ss_pred CCccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHHHHHHHH
Q psy2392 7 VSSAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLDFFEANL 84 (1165)
Q Consensus 7 ~~~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~gl~~~y 84 (1165)
.-++|.+..+.+|.+|+| +|+||+|+||||||++||++|+++||||.|| |+ +|. |+|||.++|+.||++++++|
T Consensus 122 l~~~g~~~g~~~d~a~~Lkp~L~rg~i~vIgatT~eey~~~~e~d~al~rr--F~-~I~-V~Eps~e~t~~IL~~~~~~~ 197 (268)
T d1r6bx2 122 IIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARR--FQ-KID-ITEPSIEETVQIINGLKPKY 197 (268)
T ss_dssp TTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECHHHHHCCCCCTTSSGGG--EE-EEE-CCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCccccHHHHhhHHHhCCCCeEEEeCCHHHHHHHHhhcHHHHhh--hc-ccc-cCCCCHHHHHHHHHHhhHHH
Confidence 456677777789999999 9999999999999999999999999999999 99 565 99999999999999999999
Q ss_pred HHHhh-----HHHHHHHHHHHhhcCCCCchhHH--HHHhhhhhhhhh
Q psy2392 85 EKHQG-----NLMRASVELAKEWRNDRTLRRLE--AMLLTANRETTL 124 (1165)
Q Consensus 85 E~~h~-----~al~~~v~ls~rYi~~r~lPDka--lld~a~a~~~~~ 124 (1165)
|.||+ +||+.||.||+||+++|+||||| ++|+||++.+..
T Consensus 198 e~~h~v~~~~~al~~~v~ls~ryi~~~~~PdKAIdllDea~a~~~~~ 244 (268)
T d1r6bx2 198 EAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLM 244 (268)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHS
T ss_pred hccCCEEeChHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHhh
Confidence 99999 99999999999999999999985 489999999874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.5e-21 Score=208.99 Aligned_cols=215 Identities=25% Similarity=0.388 Sum_probs=155.4
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|.+.+++.|.+.+.. +++.......+.. .|.++||+||||||||++|+++|++++.+++.++++++.++ |+|.
T Consensus 12 ~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~-~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~-~~g~ 88 (256)
T d1lv7a_ 12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGGK-IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGV 88 (256)
T ss_dssp GGSCSCHHHHHHTHHHHHH-HHCGGGC-----C-CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCCC
T ss_pred HHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhc-chhH
Confidence 5899999999999887643 4444333332221 35899999999999999999999999999999999999875 9998
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
+ +..++.+|+.+
T Consensus 89 ~-~~~l~~~f~~A------------------------------------------------------------------- 100 (256)
T d1lv7a_ 89 G-ASRVRDMFEQA------------------------------------------------------------------- 100 (256)
T ss_dssp C-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 8 44566666552
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.+ ..++|
T Consensus 101 -----------------------------------------------------------------------~~--~~P~i 107 (256)
T d1lv7a_ 101 -----------------------------------------------------------------------KK--AAPCI 107 (256)
T ss_dssp -----------------------------------------------------------------------HT--TCSEE
T ss_pred -----------------------------------------------------------------------HH--cCCEE
Confidence 11 15789
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|||||||+++..+.+.. +.......+...||..+|+.. ..+++++|||+ +.|+.+.|+|+ |||+.
T Consensus 108 l~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~--------~~~~v~vIatT----n~~~~ld~al~R~gRfd~ 175 (256)
T d1lv7a_ 108 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE--------GNEGIIVIAAT----NRPDVLDPALLRPGRFDR 175 (256)
T ss_dssp EEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC--------SSSCEEEEEEE----SCTTTSCGGGGSTTSSCE
T ss_pred EEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC--------CCCCEEEEEeC----CCcccCCHhHcCCCCCCE
Confidence 99999999998765433 222333446667888888642 35678999884 68999999998 59999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.|.|.+++.++..+|++ .. +. +..+. .+..+..|++.+ +++-++-|.+++....
T Consensus 176 ~i~i~~P~~~~R~~il~----~~-------l~--~~~~~-~~~~~~~la~~t-------~G~s~adi~~l~~~A~ 229 (256)
T d1lv7a_ 176 QVVVGLPDVRGREQILK----VH-------MR--RVPLA-PDIDAAIIARGT-------PGFSGADLANLVNEAA 229 (256)
T ss_dssp EEECCCCCHHHHHHHHH----HH-------HT--TSCBC-TTCCHHHHHHTC-------TTCCHHHHHHHHHHHH
T ss_pred EEECCCcCHHHHHHHHH----Hh-------cc--CCCcC-cccCHHHHHHhC-------CCCCHHHHHHHHHHHH
Confidence 99999999999999994 11 22 23333 233456666644 3456677888876653
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=99.83 E-value=6.7e-21 Score=206.66 Aligned_cols=215 Identities=25% Similarity=0.406 Sum_probs=149.2
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++.+|+.|.+.+.. +++.......+.. .|.++||+||||||||++|+++|++++.+++.++++.+.+. |+|.
T Consensus 9 ~di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~-~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~-~~g~ 85 (247)
T d1ixza_ 9 KDVAGAEEAKEELKEIVEF-LKNPSRFHEMGAR-IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVGV 85 (247)
T ss_dssp GGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCC-CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS-CTTH
T ss_pred HHHccHHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhhc-cccH
Confidence 4899999999998876542 2222221111111 25799999999999999999999999999999999999875 8987
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.+|..+
T Consensus 86 ~-~~~l~~~f~~a------------------------------------------------------------------- 97 (247)
T d1ixza_ 86 G-AARVRDLFETA------------------------------------------------------------------- 97 (247)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 6 34466666552
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 98 -----------------------------------------------------------------------~~--~~p~I 104 (247)
T d1ixza_ 98 -----------------------------------------------------------------------KR--HAPCI 104 (247)
T ss_dssp -----------------------------------------------------------------------TT--SSSEE
T ss_pred -----------------------------------------------------------------------HH--cCCEE
Confidence 00 14789
Q ss_pred EEEecchhhhccCCCCC-CCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 423 IFLDEIDKITTRSSQNN-NTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~-~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|||||||.++.++.... +.+.....+...||..+|+-. ..++++||+|+ +.|+.+.|+|+ |||+.
T Consensus 105 i~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~--------~~~~vivi~tT----n~~~~ld~al~R~~Rf~~ 172 (247)
T d1ixza_ 105 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE--------KDTAIVVMAAT----NRPDILDPALLRPGRFDR 172 (247)
T ss_dssp EEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC--------TTCCEEEEEEE----SCGGGSCGGGGSTTSSCE
T ss_pred EEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCC--------CCCCEEEEEeC----CCccccCHhHcCCCCCcE
Confidence 99999999998765422 233344567778998888632 34678888874 67899999997 69999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.++|++++.++..+|++ .+ +..... . .+..++.|++.+ +++-++-|.+++....
T Consensus 173 ~i~~~~P~~~eR~~il~----~~-------l~~~~~--~-~~~~~~~la~~t-------~g~s~~di~~lv~~A~ 226 (247)
T d1ixza_ 173 QIAIDAPDVKGREQILR----IH-------ARGKPL--A-EDVDLALLAKRT-------PGFVGADLENLLNEAA 226 (247)
T ss_dssp EEECCSCCHHHHHHHHH----HH-------HTTSCB--C-TTCCHHHHHHTC-------TTCCHHHHHHHHHHHH
T ss_pred EEEECCcCHHHHHHHHH----HH-------hcccCC--c-cccCHHHHHHHC-------CCCCHHHHHHHHHHHH
Confidence 99999999999999994 22 222121 1 222356676654 3445567888776654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1.1e-19 Score=197.94 Aligned_cols=179 Identities=29% Similarity=0.448 Sum_probs=137.0
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
|++|+|++.+++.|.+.+.. ++......... ...|+++||+||||||||++|+++|++++.+++.++++++.++ |+|
T Consensus 11 ~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g-~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~~-~~g 87 (256)
T d1lv7a_ 11 FADVAGCDEAKEEVAELVEY-LREPSRFQKLG-GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVG 87 (256)
T ss_dssp GGGSCSCHHHHHHTHHHHHH-HHCGGGC------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS-CCC
T ss_pred HHHHhchHHHHHHHHHHHHH-HHCHHHHHHcC-CCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhhc-chh
Confidence 58999999999999887753 33322222111 1236899999999999999999999999999999999999987 999
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
..+ ..++++|+.|..+
T Consensus 88 ~~~-~~l~~~f~~A~~~--------------------------------------------------------------- 103 (256)
T d1lv7a_ 88 VGA-SRVRDMFEQAKKA--------------------------------------------------------------- 103 (256)
T ss_dssp CCH-HHHHHHHHHHHTT---------------------------------------------------------------
T ss_pred HHH-HHHHHHHHHHHHc---------------------------------------------------------------
Confidence 884 4577777665111
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 104 -----------------------------------------------------------------------------~P~ 106 (256)
T d1lv7a_ 104 -----------------------------------------------------------------------------APC 106 (256)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCE
Confidence 567
Q ss_pred eeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1020 IIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
|+||||||+|+..+++. .+.......+...||..+++. -..+++++||+. +.|+.+.|+|. |||.
T Consensus 107 il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~--------~~~~~v~vIatT----n~~~~ld~al~R~gRfd 174 (256)
T d1lv7a_ 107 IIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF--------EGNEGIIVIAAT----NRPDVLDPALLRPGRFD 174 (256)
T ss_dssp EEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC--------CSSSCEEEEEEE----SCTTTSCGGGGSTTSSC
T ss_pred EEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCC--------CCCCCEEEEEeC----CCcccCCHhHcCCCCCC
Confidence 99999999999875432 222223334556788888753 245678999885 58999999998 5999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
-.++|++++.++..+|++
T Consensus 175 ~~i~i~~P~~~~R~~il~ 192 (256)
T d1lv7a_ 175 RQVVVGLPDVRGREQILK 192 (256)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred EEEECCCcCHHHHHHHHH
Confidence 999999999999999998
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=99.81 E-value=4.4e-20 Score=200.21 Aligned_cols=174 Identities=29% Similarity=0.509 Sum_probs=132.8
Q ss_pred hhcccchHHHHHHHHHHHHh-----HhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRN-----RWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 854 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~-----~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~ 854 (1165)
+++|+|++++++.|.+.+.. .|.+.|.. .+.++||+||||||||++|+++|++++.+++.++++.+.+
T Consensus 8 ~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~-------~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 80 (247)
T d1ixza_ 8 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR-------IPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 80 (247)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCC-------CCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCC-------CCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence 47899999999999876642 12222221 2589999999999999999999999999999999999988
Q ss_pred ccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccC
Q psy2392 855 VGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREG 934 (1165)
Q Consensus 855 ~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g 934 (1165)
+ |+|+.. ..++++|..|..+
T Consensus 81 ~-~~g~~~-~~l~~~f~~a~~~---------------------------------------------------------- 100 (247)
T d1ixza_ 81 M-FVGVGA-ARVRDLFETAKRH---------------------------------------------------------- 100 (247)
T ss_dssp S-CTTHHH-HHHHHHHHHHTTS----------------------------------------------------------
T ss_pred c-cccHHH-HHHHHHHHHHHHc----------------------------------------------------------
Confidence 7 999763 4577776655111
Q ss_pred CCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHh
Q psy2392 935 ALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINN 1014 (1165)
Q Consensus 935 ~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~ 1014 (1165)
T Consensus 101 -------------------------------------------------------------------------------- 100 (247)
T d1ixza_ 101 -------------------------------------------------------------------------------- 100 (247)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCeeeehhhhhhhccCCCC-CCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh-
Q psy2392 1015 VEQNGIIFLDEIDKITTRSSQN-NNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ- 1092 (1165)
Q Consensus 1015 ~~~~gIvfiDEiDki~~~~~~~-~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~- 1092 (1165)
+++||||||||+|+..+... .+.+.....+...||..|++. ...++++||++. +.|+.+.|.|+
T Consensus 101 --~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~--------~~~~~vivi~tT----n~~~~ld~al~R 166 (247)
T d1ixza_ 101 --APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF--------EKDTAIVVMAAT----NRPDILDPALLR 166 (247)
T ss_dssp --SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTC--------CTTCCEEEEEEE----SCGGGSCGGGGS
T ss_pred --CCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCC--------CCCCCEEEEEeC----CCccccCHhHcC
Confidence 56799999999999875432 223334455777888888863 234678888875 57999999997
Q ss_pred -ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1093 -GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1093 -gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
|||...++|++++.++..+|++
T Consensus 167 ~~Rf~~~i~~~~P~~~eR~~il~ 189 (247)
T d1ixza_ 167 PGRFDRQIAIDAPDVKGREQILR 189 (247)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHH
T ss_pred CCCCcEEEEECCcCHHHHHHHHH
Confidence 6999999999999999999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=1.2e-18 Score=186.38 Aligned_cols=139 Identities=17% Similarity=0.282 Sum_probs=97.8
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--------ceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--------~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
..+++||||+|++.+. +|..+++.+|...+... .......+++||+++ +.+..+.
T Consensus 86 ~~~~~~ide~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at----~~~~~~~ 148 (238)
T d1in4a2 86 RGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGAT----TRSGLLS 148 (238)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CCCEEEEEE----SCGGGSC
T ss_pred cCCchHHHHHHHhhhH-------------HHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEec----CCCcccc
Confidence 4679999999999765 56677777776544321 123345678888885 4566789
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
|.+++||...+.|++++.+++..++. .....+++ .+++++++.+++.+ ++.+|.+.+++
T Consensus 149 ~~~~~r~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~l~~i~~~s--------~gd~R~ai~~l 207 (238)
T d1in4a2 149 SPLRSRFGIILELDFYTVKELKEIIK-----------RAASLMDV--EIEDAAAEMIAKRS--------RGTPRIAIRLT 207 (238)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHTS--------TTCHHHHHHHH
T ss_pred ccceeeeeEEEEecCCCHHHHHHHHH-----------Hhhhhccc--hhhHHHHHHHHHhC--------CCCHHHHHHHH
Confidence 99999999999999999999999884 12334444 68899999998766 57899999999
Q ss_pred HHHHHHhhcccCCCeeEEcccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+++.+.......+ .||.+.+.+.+.
T Consensus 208 ~~~~~~~~~~~~~---~it~~~~~~al~ 232 (238)
T d1in4a2 208 KRVRDMLTVVKAD---RINTDIVLKTME 232 (238)
T ss_dssp HHHHHHHHHHTCS---SBCHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---ccCHHHHHHHHH
Confidence 8876544333222 266666665543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=1.5e-18 Score=189.15 Aligned_cols=213 Identities=21% Similarity=0.355 Sum_probs=149.9
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|++++|+.|.+.+..+.+++.+....+.. .|.++||+||||||||++++++|.+++.+++.++++.+.+. |+|.
T Consensus 4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~-~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~-~~g~ 81 (258)
T d1e32a2 4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAGE 81 (258)
T ss_dssp GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCC-CCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTS-CTTH
T ss_pred hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCC-CCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhccc-cccc
Confidence 579999999999999887655555443332222 35799999999999999999999999999999999998765 7776
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. ...++.+|..+
T Consensus 82 ~-~~~l~~~f~~A------------------------------------------------------------------- 93 (258)
T d1e32a2 82 S-ESNLRKAFEEA------------------------------------------------------------------- 93 (258)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 6 33455555442
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 94 -----------------------------------------------------------------------~~--~~p~i 100 (258)
T d1e32a2 94 -----------------------------------------------------------------------EK--NAPAI 100 (258)
T ss_dssp -----------------------------------------------------------------------HH--TCSEE
T ss_pred -----------------------------------------------------------------------Hh--cCCeE
Confidence 11 15889
Q ss_pred EEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhC--CCCee
Q psy2392 423 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPIR 500 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~--R~~~~ 500 (1165)
|||||+|.+..++....+ + ....+...++..+++. ....++++|+|. +.|..+.|+|++ ||+..
T Consensus 101 l~iDeid~l~~~r~~~~~-~-~~~~~~~~~~~~~~~~--------~~~~~vlvi~tT----n~~~~ld~al~r~gRfd~~ 166 (258)
T d1e32a2 101 IFIDELDAIAPKREKTHG-E-VERRIVSQLLTLMDGL--------KQRAHVIVMAAT----NRPNSIDPALRRFGRFDRE 166 (258)
T ss_dssp EEESSGGGTCCHHHHCCC-T-THHHHHHHHHHHHHTC--------CCSSCEEEEEEE----SCGGGSCGGGTSTTSSCEE
T ss_pred EEehhhhhhccCCCCCCC-c-hHHHHHHHhccccccc--------cccCCccEEEeC----CCccccchhhhhcccccce
Confidence 999999999987543221 1 1223444566555542 245678899884 688999999985 99999
Q ss_pred EecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 501 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 501 v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|+|+.++.++..+|++ .+ +. +..+. ++..++.|++.+. ++-++-|.+++...
T Consensus 167 i~~~~P~~~~R~~il~----~~-------l~--~~~~~-~~~~~~~la~~t~-------G~s~adl~~lv~~A 218 (258)
T d1e32a2 167 VDIGIPDATGRLEILQ----IH-------TK--NMKLA-DDVDLEQVANETH-------GHVGADLAALCSEA 218 (258)
T ss_dssp EECCCCCHHHHHHHHH----HT-------TT--TSCBC-TTCCHHHHHHHCT-------TCCHHHHHHHHHHH
T ss_pred eECCCCCHHHHHHHhh----hh-------cc--Ccccc-cccchhhhhhccc-------CCCHHHHHHHHHHH
Confidence 9999999999999994 11 21 22222 2223677777663 34455677766543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.74 E-value=1.3e-18 Score=189.71 Aligned_cols=178 Identities=24% Similarity=0.414 Sum_probs=133.2
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++.+|+.|.+.+..+++.......... ..|+++||+||||||||++++++|+.++.+|+.++++.+.+. |+|
T Consensus 3 ~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~-~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~-~~g 80 (258)
T d1e32a2 3 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK-LAG 80 (258)
T ss_dssp GGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCC-CCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTS-CTT
T ss_pred hhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCC-CCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhccc-ccc
Confidence 478999999999999988754443322221111 126899999999999999999999999999999999998877 888
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
... ..++.+|..|..+
T Consensus 81 ~~~-~~l~~~f~~A~~~--------------------------------------------------------------- 96 (258)
T d1e32a2 81 ESE-SNLRKAFEEAEKN--------------------------------------------------------------- 96 (258)
T ss_dssp HHH-HHHHHHHHHHHHT---------------------------------------------------------------
T ss_pred cHH-HHHHHHHHHHHhc---------------------------------------------------------------
Confidence 763 4466666555111
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
+++
T Consensus 97 -----------------------------------------------------------------------------~p~ 99 (258)
T d1e32a2 97 -----------------------------------------------------------------------------APA 99 (258)
T ss_dssp -----------------------------------------------------------------------------CSE
T ss_pred -----------------------------------------------------------------------------CCe
Confidence 578
Q ss_pred eeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhc--cCCe
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQG--RFPI 1097 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~g--R~~i 1097 (1165)
|+||||||.++.+.++..+ +. ..-+...++..+++ ....+++++||+. +.|+.+.|+|++ ||..
T Consensus 100 il~iDeid~l~~~r~~~~~-~~-~~~~~~~~~~~~~~--------~~~~~~vlvi~tT----n~~~~ld~al~r~gRfd~ 165 (258)
T d1e32a2 100 IIFIDELDAIAPKREKTHG-EV-ERRIVSQLLTLMDG--------LKQRAHVIVMAAT----NRPNSIDPALRRFGRFDR 165 (258)
T ss_dssp EEEESSGGGTCCHHHHCCC-TT-HHHHHHHHHHHHHT--------CCCSSCEEEEEEE----SCGGGSCGGGTSTTSSCE
T ss_pred EEEehhhhhhccCCCCCCC-ch-HHHHHHHhcccccc--------ccccCCccEEEeC----CCccccchhhhhcccccc
Confidence 9999999999987543211 11 11234445554443 3455678999885 589999999986 9999
Q ss_pred EEEcCCCCHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~ 1114 (1165)
.++|+.++.++..+||+
T Consensus 166 ~i~~~~P~~~~R~~il~ 182 (258)
T d1e32a2 166 EVDIGIPDATGRLEILQ 182 (258)
T ss_dssp EEECCCCCHHHHHHHHH
T ss_pred eeECCCCCHHHHHHHhh
Confidence 99999999999999997
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=1.9e-18 Score=184.64 Aligned_cols=187 Identities=20% Similarity=0.335 Sum_probs=138.6
Q ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 770 LVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 770 ~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
+||+.+ ++|+||+++++.|..++.....+- ..++++||+||||||||++|+++|++++.+++.+++
T Consensus 3 ~RP~~~-----~divGqe~~~~~l~~~i~~~~~~~---------~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~ 68 (238)
T d1in4a2 3 LRPKSL-----DEFIGQENVKKKLSLALEAAKMRG---------EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG 68 (238)
T ss_dssp TSCSSG-----GGCCSCHHHHHHHHHHHHHHHHHT---------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred CCCCcH-----HHcCChHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccC
Confidence 455554 789999999999999987542221 114689999999999999999999999999999888
Q ss_pred CCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHH
Q psy2392 850 TKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRK 929 (1165)
Q Consensus 850 se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~ 929 (1165)
++...+ + .+...+
T Consensus 69 ~~~~~~-------~-~~~~~~----------------------------------------------------------- 81 (238)
T d1in4a2 69 PVLVKQ-------G-DMAAIL----------------------------------------------------------- 81 (238)
T ss_dssp TTCCSH-------H-HHHHHH-----------------------------------------------------------
T ss_pred cccccH-------H-HHHHHH-----------------------------------------------------------
Confidence 765322 1 111110
Q ss_pred hhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHH
Q psy2392 930 RLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQ 1009 (1165)
Q Consensus 930 ~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~ 1009 (1165)
T Consensus 82 -------------------------------------------------------------------------------- 81 (238)
T d1in4a2 82 -------------------------------------------------------------------------------- 81 (238)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee--------eeeccCceEEEEecCCCCC
Q psy2392 1010 KAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHL 1081 (1165)
Q Consensus 1010 ~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k--------~~~~~t~~ilfI~~gaf~~ 1081 (1165)
......+++||||+|++.+. +|..|++.+|...+... .......++.||+++.
T Consensus 82 ---~~~~~~~~~~ide~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~--- 142 (238)
T d1in4a2 82 ---TSLERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT--- 142 (238)
T ss_dssp ---HHCCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CCCEEEEEES---
T ss_pred ---HhhccCCchHHHHHHHhhhH-------------HHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecC---
Confidence 01124579999999999765 78888888887655432 2234566888999865
Q ss_pred CCCCCCchhhhccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1082 AKPSDLIPELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1082 ~~p~dl~pel~gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.+..+.|.+++||...+.|++++.+++..+++ .....+++ .+++++++.|++.+.
T Consensus 143 -~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~l~~i~~~s~ 197 (238)
T d1in4a2 143 -RSGLLSSPLRSRFGIILELDFYTVKELKEIIK-----------RAASLMDV--EIEDAAAEMIAKRSR 197 (238)
T ss_dssp -CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHH-----------HHHHHTTC--CBCHHHHHHHHHTST
T ss_pred -CCccccccceeeeeEEEEecCCCHHHHHHHHH-----------Hhhhhccc--hhhHHHHHHHHHhCC
Confidence 66778899999999989999999999999988 34556666 688999999987764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=7.3e-18 Score=180.33 Aligned_cols=139 Identities=13% Similarity=0.215 Sum_probs=97.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee--------ceeecCceEEEEEeCCcccCCCCCCc
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDLI 490 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~--------~~~~~t~~ilfI~~gaf~~~~p~~l~ 490 (1165)
+.+|+||||+|++.+. .|..+++.+|...+... .......++.||++. +++....
T Consensus 87 ~~~i~~iDe~~~~~~~-------------~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~ 149 (239)
T d1ixsb2 87 EGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT----TRPGLIT 149 (239)
T ss_dssp TTCEEEEETGGGCCHH-------------HHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEE----SCCSSCS
T ss_pred CCCeeeeecccccchh-------------HHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeec----cCccccc
Confidence 4579999999999766 55577777775443321 112334455666653 5677777
Q ss_pred hhhhCCCCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 491 PELQGRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 491 pel~~R~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
+..+.|+...+.|.+++.+++.+|+. ..+..+++ .+++++++.|++.+ ++.+|.+.+++
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~i--~~~~~~l~~ia~~s--------~gd~R~a~~~l 208 (239)
T d1ixsb2 150 APLLSRFGIVEHLEYYTPEELAQGVM-----------RDARLLGV--RITEEAALEIGRRS--------RGTMRVAKRLF 208 (239)
T ss_dssp CGGGGGCSEEEECCCCCHHHHHHHHH-----------HHHGGGCC--CBCHHHHHHHHHHT--------TSSHHHHHHHH
T ss_pred chhhcccceeeEeeccChhhhhHHHH-----------HHHHHhCC--ccchHHHHHHHHHc--------CCCHHHHHHHH
Confidence 88888888899999999999999883 23344454 77899999999988 56789999999
Q ss_pred HHHHHHhhcccCCCeeEEcccccccccc
Q psy2392 571 EKLLEEVSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 571 e~~l~~~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
+.+....... ..-.||.+.+.+.+.
T Consensus 209 ~~~~~~a~~~---~~~~It~~~~~~~l~ 233 (239)
T d1ixsb2 209 RRVRDFAQVA---GEEVITRERALEALA 233 (239)
T ss_dssp HHHHHHHTTS---CCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCCcCHHHHHHHHh
Confidence 8875433211 113477777776654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.72 E-value=4.7e-18 Score=185.89 Aligned_cols=216 Identities=18% Similarity=0.298 Sum_probs=145.9
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccccccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 262 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~GyvG~ 262 (1165)
++|+|.+++++.|.+.+..+.++.......+. ..++++||+||||||||++|+++|..++.+|+.++++++.+. |.|.
T Consensus 7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~-~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~-~~~~ 84 (265)
T d1r7ra3 7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFGE 84 (265)
T ss_dssp SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCC-CCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS-CTTT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCC-CCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc-cccc
Confidence 47999999999999988655433322111111 125799999999999999999999999999999999988763 7775
Q ss_pred chhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcE
Q psy2392 263 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 342 (1165)
Q Consensus 263 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 342 (1165)
. +..++.+|..+
T Consensus 85 ~-~~~l~~~f~~A------------------------------------------------------------------- 96 (265)
T d1r7ra3 85 S-EANVREIFDKA------------------------------------------------------------------- 96 (265)
T ss_dssp H-HHHHHHHHHHH-------------------------------------------------------------------
T ss_pred h-HHHHHHHHHHH-------------------------------------------------------------------
Confidence 5 34455555442
Q ss_pred EEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceE
Q psy2392 343 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 422 (1165)
Q Consensus 343 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~I 422 (1165)
.. ..++|
T Consensus 97 -----------------------------------------------------------------------~~--~~p~i 103 (265)
T d1r7ra3 97 -----------------------------------------------------------------------RQ--AAPCV 103 (265)
T ss_dssp -----------------------------------------------------------------------HH--TCSEE
T ss_pred -----------------------------------------------------------------------Hh--cCCcc
Confidence 11 14799
Q ss_pred EEEecchhhhccCCCCCC-CccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh--CCCCe
Q psy2392 423 IFLDEIDKITTRSSQNNN-TDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFPI 499 (1165)
Q Consensus 423 ifiDEidki~~~~~~~~~-~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~--~R~~~ 499 (1165)
|||||||.+...+....+ .....+.+.+.||..+++. ..+.+++||+|. +.|+.+.|+|+ |||+.
T Consensus 104 l~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~v~vi~tt----n~~~~ld~al~r~gRf~~ 171 (265)
T d1r7ra3 104 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM--------STKKNVFIIGAT----NRPDIIDPAILRPGRLDQ 171 (265)
T ss_dssp EEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC--------------CCEEEECC----BSCTTTSCGGGSSTTSEE
T ss_pred eeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCc--------CCCCCEEEEEeC----CCchhCCHHHhCCCCccE
Confidence 999999999987543221 1112233456788888753 234568888884 68999999997 59999
Q ss_pred eEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 500 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 500 ~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.|+|.+++.++..+||+ .+++ +..+. .+..++.|++.+. ++-++-|..++.+..
T Consensus 172 ~i~~~~p~~~~R~~il~----~~l~---------~~~~~-~~~~l~~la~~t~-------g~s~~di~~lv~~A~ 225 (265)
T d1r7ra3 172 LIYIPLPDEKSRVAILK----ANLR---------KSPVA-KDVDLEFLAKMTN-------GFSGADLTEICQRAC 225 (265)
T ss_dssp EEECCCCCCHHHHHHHH----HHTT---------CC-----CCCCHHHHHHHC-------SSCCHHHHHHHHHHH
T ss_pred EEEecchHHHHHHHHHH----HHhc---------cCCch-hhhhHHHHHhcCC-------CCCHHHHHHHHHHHH
Confidence 99999999999999994 1111 11111 1113567777763 455666777766554
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=2.4e-17 Score=176.30 Aligned_cols=183 Identities=19% Similarity=0.318 Sum_probs=135.1
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVGR 860 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG~ 860 (1165)
++|+||+++++.+..++.....+ ...++++||+||||||||++|+++|+.++.++..++++.....
T Consensus 9 ddivGq~~~~~~L~~~i~~~~~~---------~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~----- 74 (239)
T d1ixsb2 9 DEYIGQERLKQKLRVYLEAAKAR---------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP----- 74 (239)
T ss_dssp GGSCSCHHHHHHHHHHHHHHTTS---------SSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSH-----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccc-----
Confidence 78999999999999998754111 1125799999999999999999999999999999998775322
Q ss_pred ChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeE
Q psy2392 861 DVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKE 940 (1165)
Q Consensus 861 ~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~ 940 (1165)
......+
T Consensus 75 ---~~~~~~~---------------------------------------------------------------------- 81 (239)
T d1ixsb2 75 ---GDLAAIL---------------------------------------------------------------------- 81 (239)
T ss_dssp ---HHHHHHH----------------------------------------------------------------------
T ss_pred ---hhhHHHH----------------------------------------------------------------------
Confidence 1010000
Q ss_pred EEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCe
Q psy2392 941 IEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGI 1020 (1165)
Q Consensus 941 v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gI 1020 (1165)
.....+..|
T Consensus 82 -----------------------------------------------------------------------~~~~~~~~i 90 (239)
T d1ixsb2 82 -----------------------------------------------------------------------ANSLEEGDI 90 (239)
T ss_dssp -----------------------------------------------------------------------HTTCCTTCE
T ss_pred -----------------------------------------------------------------------HhhccCCCe
Confidence 000114569
Q ss_pred eeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceee--------eeeccCceEEEEecCCCCCCCCCCCchhhh
Q psy2392 1021 IFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK--------YGIIKTDHILFIASGAFHLAKPSDLIPELQ 1092 (1165)
Q Consensus 1021 vfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k--------~~~~~t~~ilfI~~gaf~~~~p~dl~pel~ 1092 (1165)
+||||+|++... +|..+++.+|...+... .......++.||++. ++|....+..+
T Consensus 91 ~~iDe~~~~~~~-------------~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~~~l 153 (239)
T d1ixsb2 91 LFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT----TRPGLITAPLL 153 (239)
T ss_dssp EEEETGGGCCHH-------------HHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEE----SCCSSCSCGGG
T ss_pred eeeecccccchh-------------HHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeec----cCcccccchhh
Confidence 999999999775 77888888886544321 123334455676663 47777888888
Q ss_pred ccCCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1093 GRFPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1093 gR~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
.|+...+.|.+++.+++.+|+. ..+..+++ .+++++++.||+.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~i--~~~~~~l~~ia~~s~g 199 (239)
T d1ixsb2 154 SRFGIVEHLEYYTPEELAQGVM-----------RDARLLGV--RITEEAALEIGRRSRG 199 (239)
T ss_dssp GGCSEEEECCCCCHHHHHHHHH-----------HHHGGGCC--CBCHHHHHHHHHHTTS
T ss_pred cccceeeEeeccChhhhhHHHH-----------HHHHHhCC--ccchHHHHHHHHHcCC
Confidence 8888889999999999999988 45666777 7789999999988754
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.70 E-value=8.2e-17 Score=174.08 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=138.6
Q ss_pred HHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccc
Q psy2392 178 VSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 257 (1165)
Q Consensus 178 ~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~ 257 (1165)
.+++.+.|+|+.+.+..+.+-......... .....| +.++||+||||||||++|+++|+.++.+|+.+++++...
T Consensus 4 ~~~~~~~~i~~~~~i~~i~~~~~~~~~~~~-~~~~~p---~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~- 78 (246)
T d1d2na_ 4 ASYIMNGIIKWGDPVTRVLDDGELLVQQTK-NSDRTP---LVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMI- 78 (246)
T ss_dssp TTTCTTCCCCCSHHHHHHHHHHHHHHHHHH-HCSSCS---EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCT-
T ss_pred HHhhccCCcCcCHHHHHHHHHHHHHHHHHh-ccCCCC---CeEEEEECcCCCCHHHHHHHHhhcccccccccccccccc-
Confidence 456778899988877766665543321211 112222 489999999999999999999999999999999987643
Q ss_pred cccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHHHHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCC
Q psy2392 258 GYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGA 337 (1165)
Q Consensus 258 GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 337 (1165)
||.+......++.+|+.+
T Consensus 79 g~~~~~~~~~i~~if~~A-------------------------------------------------------------- 96 (246)
T d1d2na_ 79 GFSETAKCQAMKKIFDDA-------------------------------------------------------------- 96 (246)
T ss_dssp TCCHHHHHHHHHHHHHHH--------------------------------------------------------------
T ss_pred cccccchhhhhhhhhhhh--------------------------------------------------------------
Confidence 455554444455555442
Q ss_pred CCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhcCCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhh
Q psy2392 338 LDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNV 417 (1165)
Q Consensus 338 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 417 (1165)
..
T Consensus 97 ----------------------------------------------------------------------------~~-- 98 (246)
T d1d2na_ 97 ----------------------------------------------------------------------------YK-- 98 (246)
T ss_dssp ----------------------------------------------------------------------------HT--
T ss_pred ----------------------------------------------------------------------------hh--
Confidence 11
Q ss_pred ccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCch-hhhCC
Q psy2392 418 EQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP-ELQGR 496 (1165)
Q Consensus 418 ~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~p-el~~R 496 (1165)
.+++||||||||++...... +.+.+. .+.+.|+.++++.. ...+++++|+|. +.|+.+.+ .+.+|
T Consensus 99 ~~p~il~iDEid~l~~~~~~--~~~~~~-~~~~~ll~~l~~~~-------~~~~~v~vi~tT----n~~~~ld~~~~~~r 164 (246)
T d1d2na_ 99 SQLSCVVVDDIERLLDYVPI--GPRFSN-LVLQALLVLLKKAP-------PQGRKLLIIGTT----SRKDVLQEMEMLNA 164 (246)
T ss_dssp SSEEEEEECCHHHHTTCBTT--TTBCCH-HHHHHHHHHTTCCC-------STTCEEEEEEEE----SCHHHHHHTTCTTT
T ss_pred cccceeehhhhhhHhhhccc--ccchhH-HHHHHHHHHhcCCC-------ccccceeeeecc----CChhhccchhhcCc
Confidence 15789999999999876543 223333 34457888888632 245678899885 45666665 47899
Q ss_pred CCeeEecCCCC-HHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 497 FPIRVELDSLS-ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 497 ~~~~v~~~~L~-~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
|+..+.|+.+. .+++.++++.. + .|++..+..+++.... ..-+.|++.+.+.++..
T Consensus 165 F~~~i~~P~~~~r~~il~~l~~~---------------~---~~~~~~~~~i~~~~~g---~~~~~~ik~ll~~ie~a 221 (246)
T d1d2na_ 165 FSTTIHVPNIATGEQLLEALELL---------------G---NFKDKERTTIAQQVKG---KKVWIGIKKLLMLIEMS 221 (246)
T ss_dssp SSEEEECCCEEEHHHHHHHHHHH---------------T---CSCHHHHHHHHHHHTT---SEEEECHHHHHHHHHHH
T ss_pred cceEEecCCchhHHHHHHHHHhc---------------c---CCChHHHHHHHHHcCC---CccchhHHHHHHHHHHH
Confidence 99999997665 33343333210 1 3556666666665532 22345666666665543
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.69 E-value=4.9e-17 Score=175.83 Aligned_cols=181 Identities=19% Similarity=0.238 Sum_probs=122.8
Q ss_pred HHhhhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccc
Q psy2392 777 SELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVG 856 (1165)
Q Consensus 777 ~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~G 856 (1165)
+++.+.|+|+.+.++.+............ ..... ++.++||+||||||||++|+++|+.++.+|+.+++++... |
T Consensus 5 ~~~~~~~i~~~~~i~~i~~~~~~~~~~~~-~~~~~---p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-g 79 (246)
T d1d2na_ 5 SYIMNGIIKWGDPVTRVLDDGELLVQQTK-NSDRT---PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMI-G 79 (246)
T ss_dssp TTCTTCCCCCSHHHHHHHHHHHHHHHHHH-HCSSC---SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCT-T
T ss_pred HhhccCCcCcCHHHHHHHHHHHHHHHHHh-ccCCC---CCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccc-c
Confidence 45667888987766666655543222221 11111 2589999999999999999999999999999999988653 3
Q ss_pred ccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCC
Q psy2392 857 YVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGAL 936 (1165)
Q Consensus 857 yvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~l 936 (1165)
|.+......++++|+.|...
T Consensus 80 ~~~~~~~~~i~~if~~A~~~------------------------------------------------------------ 99 (246)
T d1d2na_ 80 FSETAKCQAMKKIFDDAYKS------------------------------------------------------------ 99 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHTS------------------------------------------------------------
T ss_pred ccccchhhhhhhhhhhhhhc------------------------------------------------------------
Confidence 55544344566665554111
Q ss_pred CCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhh
Q psy2392 937 DNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVE 1016 (1165)
Q Consensus 937 d~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~ 1016 (1165)
T Consensus 100 -------------------------------------------------------------------------------- 99 (246)
T d1d2na_ 100 -------------------------------------------------------------------------------- 99 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCch-hhhccC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIP-ELQGRF 1095 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~p-el~gR~ 1095 (1165)
+++|+||||||++...... +++.+.. +...|+.++++. ....+++++||+.+ .|+.+.+ .+.+||
T Consensus 100 ~p~il~iDEid~l~~~~~~--~~~~~~~-~~~~ll~~l~~~-------~~~~~~v~vi~tTn----~~~~ld~~~~~~rF 165 (246)
T d1d2na_ 100 QLSCVVVDDIERLLDYVPI--GPRFSNL-VLQALLVLLKKA-------PPQGRKLLIIGTTS----RKDVLQEMEMLNAF 165 (246)
T ss_dssp SEEEEEECCHHHHTTCBTT--TTBCCHH-HHHHHHHHTTCC-------CSTTCEEEEEEEES----CHHHHHHTTCTTTS
T ss_pred ccceeehhhhhhHhhhccc--ccchhHH-HHHHHHHHhcCC-------CccccceeeeeccC----ChhhccchhhcCcc
Confidence 5689999999999876543 2233332 445678888763 23456788998864 5666654 478999
Q ss_pred CeEEEcCCCC-HHHHHHHHhhh
Q psy2392 1096 PIRVELDSLS-ISDFTRIMTST 1116 (1165)
Q Consensus 1096 ~i~v~l~~l~-~~~l~~il~~~ 1116 (1165)
...++++.+. .+++.++|..+
T Consensus 166 ~~~i~~P~~~~r~~il~~l~~~ 187 (246)
T d1d2na_ 166 STTIHVPNIATGEQLLEALELL 187 (246)
T ss_dssp SEEEECCCEEEHHHHHHHHHHH
T ss_pred ceEEecCCchhHHHHHHHHHhc
Confidence 9999997774 56677777643
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.67 E-value=9e-18 Score=183.67 Aligned_cols=180 Identities=19% Similarity=0.331 Sum_probs=128.8
Q ss_pred hhcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccccccc
Q psy2392 780 DKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYVG 859 (1165)
Q Consensus 780 ~~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~GyvG 859 (1165)
+++|+|++++++.|.+.+..++++....... +...++++||+||||||||++|+++|..++.+|+.++++.+.+. |.|
T Consensus 6 f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~-g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~-~~~ 83 (265)
T d1r7ra3 6 WEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM-WFG 83 (265)
T ss_dssp CSSCSSSSCCCCHHHHHTHHHHHCHHHHHHC-CCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS-CTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhC-CCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc-ccc
Confidence 4789999999999999886543322111100 01125899999999999999999999999999999999988776 777
Q ss_pred cChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCe
Q psy2392 860 RDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAEDRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNK 939 (1165)
Q Consensus 860 ~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r 939 (1165)
.. +..++.+|..|..
T Consensus 84 ~~-~~~l~~~f~~A~~---------------------------------------------------------------- 98 (265)
T d1r7ra3 84 ES-EANVREIFDKARQ---------------------------------------------------------------- 98 (265)
T ss_dssp TH-HHHHHHHHHHHHH----------------------------------------------------------------
T ss_pred ch-HHHHHHHHHHHHh----------------------------------------------------------------
Confidence 65 3446666655411
Q ss_pred EEEEEecCCCCcccccCCcchHHHHHHHHHHHHhhCCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCC
Q psy2392 940 EIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVIGNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNG 1019 (1165)
Q Consensus 940 ~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~g 1019 (1165)
.+++
T Consensus 99 ----------------------------------------------------------------------------~~p~ 102 (265)
T d1r7ra3 99 ----------------------------------------------------------------------------AAPC 102 (265)
T ss_dssp ----------------------------------------------------------------------------TCSE
T ss_pred ----------------------------------------------------------------------------cCCc
Confidence 1578
Q ss_pred eeeehhhhhhhccCCCCCCCC-ccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh--ccCC
Q psy2392 1020 IIFLDEIDKITTRSSQNNNTD-ISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ--GRFP 1096 (1165)
Q Consensus 1020 IvfiDEiDki~~~~~~~~~~~-~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~--gR~~ 1096 (1165)
|+||||||.+...++...+.. ...+-+-..||..+++ ...+.++++||+. +.|+++.|+|+ |||.
T Consensus 103 il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~--------~~~~~~v~vi~tt----n~~~~ld~al~r~gRf~ 170 (265)
T d1r7ra3 103 VLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG--------MSTKKNVFIIGAT----NRPDIIDPAILRPGRLD 170 (265)
T ss_dssp EEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC--------------CCEEEECC----BSCTTTSCGGGSSTTSE
T ss_pred ceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhC--------cCCCCCEEEEEeC----CCchhCCHHHhCCCCcc
Confidence 999999999998743222211 1111133567777764 2345568888875 58999999997 5999
Q ss_pred eEEEcCCCCHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~ 1114 (1165)
..++|++++.++..+||+
T Consensus 171 ~~i~~~~p~~~~R~~il~ 188 (265)
T d1r7ra3 171 QLIYIPLPDEKSRVAILK 188 (265)
T ss_dssp EEEECCCCCCHHHHHHHH
T ss_pred EEEEecchHHHHHHHHHH
Confidence 999999999999999998
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=6.8e-17 Score=167.57 Aligned_cols=49 Identities=24% Similarity=0.366 Sum_probs=45.9
Q ss_pred eecCCcccccCCccccccccccCcchHHHHhhhhcccccccCCCHHHHHHHHH
Q psy2392 624 VRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLD 676 (1165)
Q Consensus 624 LaRG~l~~IGATT~~Eyr~~IekD~Al~RR~lFq~~Vi~v~EPs~edT~~IL~ 676 (1165)
|+||+++|||+||++||+++|++|+||.|| |+ +|. |.||+.++|+.||+
T Consensus 147 L~rg~l~~IgatT~eey~~~~e~d~aL~rr--F~-~I~-V~Ep~~e~t~~IL~ 195 (195)
T d1jbka_ 147 LARGELHCVGATTLDEYRQYIEKDAALERR--FQ-KVF-VAEPSVEDTIAILR 195 (195)
T ss_dssp HHTTSCCEEEEECHHHHHHHTTTCHHHHTT--EE-EEE-CCCCCHHHHHTTCC
T ss_pred HhCCCceEEecCCHHHHHHHHHcCHHHHhc--CC-Eee-cCCCCHHHHHHHhC
Confidence 568999999999999999999999999999 99 677 99999999999874
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.2e-15 Score=163.77 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=92.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.||||||+|++++. .|+.||..||.. ..++.||++. ++++.+.|.+++|+.
T Consensus 115 ~~kviiIde~d~l~~~-------------~q~~Llk~lE~~----------~~~~~~il~t----n~~~~i~~~i~SRc~ 167 (239)
T d1njfa_ 115 RFKVYLIDEVHMLSRH-------------SFNALLKTLEEP----------PEHVKFLLAT----TDPQKLPVTILSRCL 167 (239)
T ss_dssp SSEEEEEETGGGSCHH-------------HHHHHHHHHHSC----------CTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CCEEEEEECcccCCHH-------------HHHHHHHHHhcC----------CCCeEEEEEc----CCccccChhHhhhhc
Confidence 4569999999999755 677999999852 3455566663 567889999999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.+.|.+++.+++.+++. ..+..+++ .+++++++.|+..+ ++..|++.+.+++++...
T Consensus 168 -~i~~~~~~~~~i~~~l~-----------~i~~~e~~--~~~~~~l~~i~~~s--------~Gd~R~ain~l~~~~~~~- 224 (239)
T d1njfa_ 168 -QFHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAA--------EGSLRDALSLTDQAIASG- 224 (239)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHT--------TTCHHHHHHHHHHHHHHT-
T ss_pred -ccccccCcHHHhhhHHH-----------HHHhhhcc--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhC-
Confidence 57999999999998873 23344565 67899999998876 578999999988765432
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
.+ .|+.+.|++.++
T Consensus 225 ---~~---~I~~~~v~~~lg 238 (239)
T d1njfa_ 225 ---DG---QVSTQAVSAMLG 238 (239)
T ss_dssp ---TT---SBCHHHHHHHHT
T ss_pred ---CC---CcCHHHHHHHhC
Confidence 11 267777766553
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.63 E-value=2.6e-16 Score=166.68 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=94.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...|+||||+|.+... .|..|+..+|.. +.++.|+++. +.+..+.|.+++|+.
T Consensus 99 ~~kiiiiDe~d~~~~~-------------~~~~Ll~~le~~----------~~~~~~~~~~----~~~~~i~~~i~sr~~ 151 (227)
T d1sxjc2 99 GFKLIILDEADAMTNA-------------AQNALRRVIERY----------TKNTRFCVLA----NYAHKLTPALLSQCT 151 (227)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred CeEEEEEeccccchhh-------------HHHHHHHHhhhc----------ccceeecccc----CcHHHhHHHHHHHHh
Confidence 3569999999998765 567899999853 3455555542 567789999999986
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
. +.|++++.+++.++|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++.+....
T Consensus 152 ~-i~~~~~~~~~i~~~l~-----------~I~~~e~i--~i~~~~l~~i~~~s--------~Gd~R~ain~Lq~~~~~~- 208 (227)
T d1sxjc2 152 R-FRFQPLPQEAIERRIA-----------NVLVHEKL--KLSPNAEKALIELS--------NGDMRRVLNVLQSCKATL- 208 (227)
T ss_dssp E-EECCCCCHHHHHHHHH-----------HHHHTTTC--CBCHHHHHHHHHHH--------TTCHHHHHHHTTTTTTTT-
T ss_pred h-hccccccccccccccc-----------cccccccc--cCCHHHHHHHHHHc--------CCcHHHHHHHHHHHHHhc-
Confidence 5 6999999999999884 34556676 67899999999988 568999988887653211
Q ss_pred cccCCCeeEEcccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~~ 598 (1165)
..+ ..-.||.+.|++.++
T Consensus 209 -~~~-~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 209 -DNP-DEDEISDDVIYECCG 226 (227)
T ss_dssp -CSS-SCCCBCHHHHHHHTT
T ss_pred -CCC-CCCeeCHHHHHHHhC
Confidence 111 114577777777665
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.61 E-value=1.6e-15 Score=160.97 Aligned_cols=107 Identities=28% Similarity=0.397 Sum_probs=83.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
.+.|+|+||+|.+... .|..|+++++.. ..++.||++. +.++.+.+.|++|+.
T Consensus 109 ~~~iilide~d~~~~~-------------~~~~ll~~l~~~----------~~~~~~i~~~----n~~~~i~~~l~sR~~ 161 (231)
T d1iqpa2 109 SFKIIFLDEADALTQD-------------AQQALRRTMEMF----------SSNVRFILSC----NYSSKIIEPIQSRCA 161 (231)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHHTEE
T ss_pred CceEEeehhhhhcchh-------------HHHHHhhhcccC----------CcceEEEecc----CChhhchHhHhCccc
Confidence 4679999999998766 566888888742 3456677663 456678899999997
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
. +.|.+++.+++..+|+ ..+..+++ .+++++++.|++.+ ++++|.+.+.++.+.
T Consensus 162 ~-i~~~~~~~~~~~~~l~-----------~~~~~e~i--~i~~~~l~~I~~~~--------~gdiR~ai~~Lq~~~ 215 (231)
T d1iqpa2 162 I-FRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIA--------EGDMRRAINILQAAA 215 (231)
T ss_dssp E-EECCCCCHHHHHHHHH-----------HHHHTTTC--EECHHHHHHHHHHH--------TTCHHHHHHHHHHHH
T ss_pred c-ccccccchhhHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHH
Confidence 6 6999999999999984 33455665 67899999999977 578999888887664
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=3.3e-15 Score=158.15 Aligned_cols=108 Identities=20% Similarity=0.334 Sum_probs=83.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...+|||||+|.+... .|+.|+..+|.. ..+..||++. +..+.+.|.|++|+.
T Consensus 101 ~~kviiiDe~d~~~~~-------------~~~~ll~~~e~~----------~~~~~~i~~~----~~~~~i~~~l~sr~~ 153 (224)
T d1sxjb2 101 KHKIVILDEADSMTAG-------------AQQALRRTMELY----------SNSTRFAFAC----NQSNKIIEPLQSQCA 153 (224)
T ss_dssp CCEEEEEESGGGSCHH-------------HHHTTHHHHHHT----------TTTEEEEEEE----SCGGGSCHHHHTTSE
T ss_pred ceEEEEEecccccchh-------------HHHHHhhhcccc----------ccceeeeecc----CchhhhhhHHHHHHH
Confidence 3569999999999866 566888888753 3344455542 345678899999996
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLE 575 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~ 575 (1165)
. +.|++++.+++..+|. ..+..+|+ .+++++++.|++.+ +++.|.+.+.++.++.
T Consensus 154 ~-i~~~~~~~~~i~~~l~-----------~i~~~e~~--~i~~~~l~~I~~~s--------~Gd~R~ai~~Lq~~~~ 208 (224)
T d1sxjb2 154 I-LRYSKLSDEDVLKRLL-----------QIIKLEDV--KYTNDGLEAIIFTA--------EGDMRQAINNLQSTVA 208 (224)
T ss_dssp E-EECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHH--------TTCHHHHHHHHHHHHH
T ss_pred H-hhhcccchhhhHHHHH-----------HHHHhccc--CCCHHHHHHHHHHc--------CCcHHHHHHHHHHHHH
Confidence 5 7999999999999984 23445566 57899999999988 6789999999988764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.59 E-value=1e-15 Score=162.36 Aligned_cols=128 Identities=18% Similarity=0.204 Sum_probs=91.6
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.|+||||+|.+... .++.|+.+++- ...+..||.+. +.++.+.+.+++|+.
T Consensus 108 ~~~viiiDe~d~l~~~-------------~~~~l~~~~~~----------~~~~~~~i~~~----~~~~~~~~~l~sr~~ 160 (237)
T d1sxjd2 108 PYKIIILDEADSMTAD-------------AQSALRRTMET----------YSGVTRFCLIC----NYVTRIIDPLASQCS 160 (237)
T ss_dssp SCEEEEETTGGGSCHH-------------HHHHHHHHHHH----------TTTTEEEEEEE----SCGGGSCHHHHHHSE
T ss_pred CceEEEEecccccCHH-------------HHHHHhhcccc----------ccccccccccc----cccccccccccchhh
Confidence 4569999999999765 44467776653 23344455442 455678899999995
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhh
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVS 578 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~ 578 (1165)
.|.|++++.+++.++|+ ..+..+++ .+++++++.|++.+ ++++|.+.+.|+.......
T Consensus 161 -~i~f~~~~~~~~~~~L~-----------~i~~~e~i--~i~~~~l~~ia~~s--------~gd~R~ai~~L~~~~~~~~ 218 (237)
T d1sxjd2 161 -KFRFKALDASNAIDRLR-----------FISEQENV--KCDDGVLERILDIS--------AGDLRRGITLLQSASKGAQ 218 (237)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHT--------SSCHHHHHHHHHHTHHHHH
T ss_pred -hhccccccccccchhhh-----------hhhhhhcC--cCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHHhch
Confidence 57999999999999984 23455666 68999999999877 5789999999988765544
Q ss_pred cccCCCeeEEccccccccc
Q psy2392 579 FNSNNISLLVDADYVNSRL 597 (1165)
Q Consensus 579 ~~~~~~~~~i~~~~v~~~~ 597 (1165)
+..... .||.+.|++.+
T Consensus 219 ~~~~~~--~It~~~i~e~~ 235 (237)
T d1sxjd2 219 YLGDGK--NITSTQVEELA 235 (237)
T ss_dssp HHCSCC--CCCHHHHHHHH
T ss_pred hcCCCC--ccCHHHHHHhh
Confidence 333322 36777776654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.7e-15 Score=160.92 Aligned_cols=91 Identities=21% Similarity=0.339 Sum_probs=73.6
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
.|+||||+|++... .|+.||++||... .+..||++. ++++.++|.+++||-+
T Consensus 117 kviiIde~d~l~~~-------------~q~~Llk~lE~~~----------~~~~~il~t----n~~~~i~~~i~SRc~~- 168 (239)
T d1njfa_ 117 KVYLIDEVHMLSRH-------------SFNALLKTLEEPP----------EHVKFLLAT----TDPQKLPVTILSRCLQ- 168 (239)
T ss_dssp EEEEEETGGGSCHH-------------HHHHHHHHHHSCC----------TTEEEEEEE----SCGGGSCHHHHTTSEE-
T ss_pred EEEEEECcccCCHH-------------HHHHHHHHHhcCC----------CCeEEEEEc----CCccccChhHhhhhcc-
Confidence 48999999999765 7889999999632 344566653 4788999999999964
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.|.+++.+++.+++. ..+..+|+ .+++++++.|+..|.
T Consensus 169 i~~~~~~~~~i~~~l~-----------~i~~~e~~--~~~~~~l~~i~~~s~ 207 (239)
T d1njfa_ 169 FHLKALDVEQIRHQLE-----------HILNEEHI--AHEPRALQLLARAAE 207 (239)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHTT
T ss_pred cccccCcHHHhhhHHH-----------HHHhhhcc--CCCHHHHHHHHHHcC
Confidence 7999999999988887 45566677 678999999998774
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.6e-15 Score=160.59 Aligned_cols=92 Identities=22% Similarity=0.298 Sum_probs=74.3
Q ss_pred CeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCeE
Q psy2392 1019 GIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPIR 1098 (1165)
Q Consensus 1019 gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i~ 1098 (1165)
.|+||||+|.+... .|..|+.++|.... +..||++ .+.++.+.|.+++||-.
T Consensus 101 kiiiiDe~d~~~~~-------------~~~~Ll~~le~~~~----------~~~~~~~----~~~~~~i~~~i~sr~~~- 152 (227)
T d1sxjc2 101 KLIILDEADAMTNA-------------AQNALRRVIERYTK----------NTRFCVL----ANYAHKLTPALLSQCTR- 152 (227)
T ss_dssp EEEEETTGGGSCHH-------------HHHHHHHHHHHTTT----------TEEEEEE----ESCGGGSCHHHHTTSEE-
T ss_pred EEEEEeccccchhh-------------HHHHHHHHhhhccc----------ceeeccc----cCcHHHhHHHHHHHHhh-
Confidence 49999999999766 78899999996433 3344443 24677899999999865
Q ss_pred EEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1099 VELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1099 v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
+.|++++.+++.++|. ..+..||+ .+++++++.||+.+..
T Consensus 153 i~~~~~~~~~i~~~l~-----------~I~~~e~i--~i~~~~l~~i~~~s~G 192 (227)
T d1sxjc2 153 FRFQPLPQEAIERRIA-----------NVLVHEKL--KLSPNAEKALIELSNG 192 (227)
T ss_dssp EECCCCCHHHHHHHHH-----------HHHHTTTC--CBCHHHHHHHHHHHTT
T ss_pred hccccccccccccccc-----------cccccccc--cCCHHHHHHHHHHcCC
Confidence 6999999999999998 56777888 6789999999998753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=1.8e-15 Score=160.18 Aligned_cols=92 Identities=24% Similarity=0.357 Sum_probs=73.3
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..+|||||+|.+... .|..|+..+|.....+ .||++. +..+.+.|.|++||-+
T Consensus 102 ~kviiiDe~d~~~~~-------------~~~~ll~~~e~~~~~~----------~~i~~~----~~~~~i~~~l~sr~~~ 154 (224)
T d1sxjb2 102 HKIVILDEADSMTAG-------------AQQALRRTMELYSNST----------RFAFAC----NQSNKIIEPLQSQCAI 154 (224)
T ss_dssp CEEEEEESGGGSCHH-------------HHHTTHHHHHHTTTTE----------EEEEEE----SCGGGSCHHHHTTSEE
T ss_pred eEEEEEecccccchh-------------HHHHHhhhccccccce----------eeeecc----CchhhhhhHHHHHHHH
Confidence 459999999999876 7889999998654444 333332 3556788999999975
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+.|++++.+++.++|. ..++.||+ .+++++++.|++.|.
T Consensus 155 -i~~~~~~~~~i~~~l~-----------~i~~~e~~--~i~~~~l~~I~~~s~ 193 (224)
T d1sxjb2 155 -LRYSKLSDEDVLKRLL-----------QIIKLEDV--KYTNDGLEAIIFTAE 193 (224)
T ss_dssp -EECCCCCHHHHHHHHH-----------HHHHHHTC--CBCHHHHHHHHHHHT
T ss_pred -hhhcccchhhhHHHHH-----------HHHHhccc--CCCHHHHHHHHHHcC
Confidence 7999999999999998 55667788 578999999999875
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.56 E-value=3.8e-15 Score=158.09 Aligned_cols=93 Identities=30% Similarity=0.430 Sum_probs=74.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCC
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 1096 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~ 1096 (1165)
...|+++||+|.+... .|..|+++++... .++.||++. +.++.+.+.|++|+.
T Consensus 109 ~~~iilide~d~~~~~-------------~~~~ll~~l~~~~----------~~~~~i~~~----n~~~~i~~~l~sR~~ 161 (231)
T d1iqpa2 109 SFKIIFLDEADALTQD-------------AQQALRRTMEMFS----------SNVRFILSC----NYSSKIIEPIQSRCA 161 (231)
T ss_dssp SCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHHTEE
T ss_pred CceEEeehhhhhcchh-------------HHHHHhhhcccCC----------cceEEEecc----CChhhchHhHhCccc
Confidence 4569999999999876 7888999988543 344566654 356778899999997
Q ss_pred eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1097 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1097 i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
+ +.|.+++.+++..+|+ ..++.+|+ .+++++++.||+.+-
T Consensus 162 ~-i~~~~~~~~~~~~~l~-----------~~~~~e~i--~i~~~~l~~I~~~~~ 201 (231)
T d1iqpa2 162 I-FRFRPLRDEDIAKRLR-----------YIAENEGL--ELTEEGLQAILYIAE 201 (231)
T ss_dssp E-EECCCCCHHHHHHHHH-----------HHHHTTTC--EECHHHHHHHHHHHT
T ss_pred c-ccccccchhhHHHHHH-----------HHHHHhCC--CCCHHHHHHHHHHcC
Confidence 6 6999999999999998 45667787 678999999998763
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.52 E-value=5.1e-16 Score=172.87 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=103.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC--CCceEEeccccccccccccchhhHHHHHHHHHhhhhhhHHHHHHHhHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 296 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~--~~~i~ld~s~~~~~GyvG~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1165)
+++||+||||||||.+|++||.+++ .+|+.++++++.++ |+|.. +..++++|+.+
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~-~~G~~-e~~~~~~f~~a--------------------- 180 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG-YNTDF-NVFVDDIARAM--------------------- 180 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTT-CBCCH-HHHHHHHHHHH---------------------
T ss_pred ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhc-ccchH-HHHHHHHHHHH---------------------
Confidence 5667799999999999999999985 78999999999985 99998 45577777662
Q ss_pred HHHHHhhcCCCcCCCCccccCCcCcchhhHHHHHHHhhcCCCCCcEEEEEecCCCCcccccCCcchhHHhHHHHHHhhhc
Q psy2392 297 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 376 (1165)
Q Consensus 297 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (1165)
T Consensus 181 -------------------------------------------------------------------------------- 180 (321)
T d1w44a_ 181 -------------------------------------------------------------------------------- 180 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccceeeHHHHHHHHHHHHHHhhcChhHHHHHHHhhhccceEEEEecchhhhccCCCCCCCccchhhhhhhhcccc
Q psy2392 377 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 456 (1165)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~ 456 (1165)
.+++||||||||.+..++..+.+.... +.+.+.||..|
T Consensus 181 -----------------------------------------~~~~ilf~DEid~~~~~r~~~~~~~~~-~r~v~~lL~e~ 218 (321)
T d1w44a_ 181 -----------------------------------------LQHRVIVIDSLKNVIGAAGGNTTSGGI-SRGAFDLLSDI 218 (321)
T ss_dssp -----------------------------------------HHCSEEEEECCTTTC-----------C-CHHHHHHHHHH
T ss_pred -----------------------------------------hhccEEEeehhhhhccccccCCCCCcc-hhhhhhhhhhc
Confidence 125799999999999887653332222 23566788888
Q ss_pred cCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhh------CCCCeeEecCCCCHHHHHHHHh
Q psy2392 457 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ------GRFPIRVELDSLSISDFTRIMT 516 (1165)
Q Consensus 457 Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~------~R~~~~v~~~~L~~~~l~~Il~ 516 (1165)
+|.. ..+++++|+++ ||.++.|.+. +||+..|.+..++.++..+||.
T Consensus 219 dg~~--------~~~~v~viaat-----N~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il~ 271 (321)
T d1w44a_ 219 GAMA--------ASRGCVVIASL-----NPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLT 271 (321)
T ss_dssp HHHH--------HHHTCEEEEEC-----CCCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEEE
T ss_pred cccc--------cCCCeEEEEeC-----CCcccccchhhhhhccCcccceeecCCCChHHHHHHHH
Confidence 8632 34578899984 5777666553 8999999999999999888884
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.49 E-value=1.4e-15 Score=169.38 Aligned_cols=140 Identities=15% Similarity=0.149 Sum_probs=101.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC--CCeEEEecCCcccccccccChhhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN--APFIKIEATKFTEVGYVGRDVDTIIRDLIDISIKQTREFEINKVRTRAEDAAE 894 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~--~~fi~l~~se~~~~GyvG~~~~~~l~~lf~~a~~~~~~~~~~~~~~~~~~~a~ 894 (1165)
+++||+||||||||.+|+++|.+++ .+|+.++++++.++ |+|..+ ..++++|+.|
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~-~~G~~e-~~~~~~f~~a--------------------- 180 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSG-YNTDFN-VFVDDIARAM--------------------- 180 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTT-CBCCHH-HHHHHHHHHH---------------------
T ss_pred ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhc-ccchHH-HHHHHHHHHH---------------------
Confidence 4556689999999999999999985 78999999999998 999984 4578877554
Q ss_pred HHHHHhhcCCcccCCCccccCCcccchhhHHHHHHhhccCCCCCeEEEEEecCCCCcccccCCcchHHHHHHHHHHHHhh
Q psy2392 895 DRVIDILVPSKEKSNLDTDFNNENNNISTRQIFRKRLREGALDNKEIEIELNDTGPHMEIMSPPGMEEMTAQIKTMFSVI 974 (1165)
Q Consensus 895 ~~vv~~ll~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ld~r~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 974 (1165)
T Consensus 181 -------------------------------------------------------------------------------- 180 (321)
T d1w44a_ 181 -------------------------------------------------------------------------------- 180 (321)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeeeHHHHHHHHHHHHHhhcCCHHHHHHHHHHhhhcCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccc
Q psy2392 975 GNHRKKTRKIKIREAIKLLIDEEANKLLNEDEIQQKAINNVEQNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLV 1054 (1165)
Q Consensus 975 ~~~~~~~~~~tvk~a~~~l~~~~~~~~~~~~~~~~~a~~~~~~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~ 1054 (1165)
.+++|+||||||.|++.+.++.+..... -+-+.||.-|
T Consensus 181 -----------------------------------------~~~~ilf~DEid~~~~~r~~~~~~~~~~-r~v~~lL~e~ 218 (321)
T d1w44a_ 181 -----------------------------------------LQHRVIVIDSLKNVIGAAGGNTTSGGIS-RGAFDLLSDI 218 (321)
T ss_dssp -----------------------------------------HHCSEEEEECCTTTC-----------CC-HHHHHHHHHH
T ss_pred -----------------------------------------hhccEEEeehhhhhccccccCCCCCcch-hhhhhhhhhc
Confidence 1357999999999998865433322221 2445677777
Q ss_pred cCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhh------ccCCeEEEcCCCCHHHHHHHHh
Q psy2392 1055 EGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQ------GRFPIRVELDSLSISDFTRIMT 1114 (1165)
Q Consensus 1055 Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~------gR~~i~v~l~~l~~~~l~~il~ 1114 (1165)
+|. ....++++|++. +|+++.|.+- |||.-.|.+.+++.++-.+||.
T Consensus 219 dg~--------~~~~~v~viaat-----N~~~~~~~i~~~~~r~~Rf~~~v~v~~pd~~~r~~il~ 271 (321)
T d1w44a_ 219 GAM--------AASRGCVVIASL-----NPTSNDDKIVELVKEASRSNSTSLVISTDVDGEWQVLT 271 (321)
T ss_dssp HHH--------HHHHTCEEEEEC-----CCCCCCHHHHHHHHHHHHHSCSEEEEECSSTTEEEEEE
T ss_pred ccc--------ccCCCeEEEEeC-----CCcccccchhhhhhccCcccceeecCCCChHHHHHHHH
Confidence 753 344578888885 4877766553 8988888999999888888886
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=9.8e-15 Score=154.72 Aligned_cols=92 Identities=21% Similarity=0.257 Sum_probs=71.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|+||||+|.+... .|+.|+.++|-.. .+..||.+. ..++.+.+.+++||.
T Consensus 109 ~~viiiDe~d~l~~~-------------~~~~l~~~~~~~~----------~~~~~i~~~----~~~~~~~~~l~sr~~- 160 (237)
T d1sxjd2 109 YKIIILDEADSMTAD-------------AQSALRRTMETYS----------GVTRFCLIC----NYVTRIIDPLASQCS- 160 (237)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----------TTEEEEEEE----SCGGGSCHHHHHHSE-
T ss_pred ceEEEEecccccCHH-------------HHHHHhhcccccc----------ccccccccc----cccccccccccchhh-
Confidence 348999999999765 6678888777432 333344332 456678899999995
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.+.|++++.+++.++|+ .++..+|+ .+++++++.||+.+.
T Consensus 161 ~i~f~~~~~~~~~~~L~-----------~i~~~e~i--~i~~~~l~~ia~~s~ 200 (237)
T d1sxjd2 161 KFRFKALDASNAIDRLR-----------FISEQENV--KCDDGVLERILDISA 200 (237)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHTTTC--CCCHHHHHHHHHHTS
T ss_pred hhccccccccccchhhh-----------hhhhhhcC--cCCHHHHHHHHHHcC
Confidence 57999999999999998 45667787 689999999999874
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=1.2e-13 Score=147.94 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=55.8
Q ss_pred ccEecchhhHHHHHHHHHhhhhhh----cccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQ----QITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 256 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~----~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~ 256 (1165)
++++|++++++.|..++.. |... .......+...+.++||+||||||||++|+++|++++.+++.+++++..+
T Consensus 14 ~dlig~~~~~~~L~~~l~~-~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~~ 90 (253)
T d1sxja2 14 QQVCGNKGSVMKLKNWLAN-WENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRS 90 (253)
T ss_dssp GGCCSCHHHHHHHHHHHHT-HHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCC
T ss_pred HHhcCCHHHHHHHHHHHHh-hhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccchh
Confidence 4899999999999998864 2211 11112222233579999999999999999999999999999999987653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.46 E-value=4.9e-14 Score=150.91 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=63.8
Q ss_pred HHHhhhHHHHHHHHhhhcccchHHHHHHHHHHHHhHhhhhc---ccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 765 IIKKSLVIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQ---ITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 765 i~~~~~~~~~l~~~L~~~IvGQ~~ak~~l~~~i~~~~~r~~---l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+|-++++|..+ ++++|++++++.|..++........ ......+...++++||+||||||||++|+++|+.++
T Consensus 3 lW~eky~P~~~-----~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 3 LWTVKYAPTNL-----QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp CHHHHTCCSSG-----GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccccCcCCCCH-----HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567788776 8999999999999998864211110 011111222347899999999999999999999999
Q ss_pred CCeEEEecCCcccc
Q psy2392 842 APFIKIEATKFTEV 855 (1165)
Q Consensus 842 ~~fi~l~~se~~~~ 855 (1165)
.+++.+++++..+.
T Consensus 78 ~~~~~~~~~~~~~~ 91 (253)
T d1sxja2 78 YDILEQNASDVRSK 91 (253)
T ss_dssp CEEEEECTTSCCCH
T ss_pred hhhhccccccchhh
Confidence 99999999886543
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.42 E-value=3.7e-13 Score=143.70 Aligned_cols=108 Identities=19% Similarity=0.278 Sum_probs=81.2
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...+++|||+|.+... .|+.|+.++|. ...++.||+++ +.+..+.|.|++||.
T Consensus 131 ~~~iiiide~d~l~~~-------------~~~~l~~~~e~----------~~~~~~~Il~t----n~~~~i~~~l~sR~~ 183 (252)
T d1sxje2 131 RYKCVIINEANSLTKD-------------AQAALRRTMEK----------YSKNIRLIMVC----DSMSPIIAPIKSQCL 183 (252)
T ss_dssp CCEEEEEECTTSSCHH-------------HHHHHHHHHHH----------STTTEEEEEEE----SCSCSSCHHHHTTSE
T ss_pred CceEEEeccccccccc-------------cchhhhccccc----------ccccccceeee----ccccchhhhhhcchh
Confidence 4569999999998655 45578888874 23456677764 456778999999994
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLL 574 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l 574 (1165)
.|.|++++.+++.++|. ..+..+++.+. ++++++.|+..+ +++.|.+.+.++.+.
T Consensus 184 -~i~~~~~~~~~~~~~l~-----------~i~~~e~~~~~-~~~~l~~i~~~s--------~Gd~R~ai~~Lq~~~ 238 (252)
T d1sxje2 184 -LIRCPAPSDSEISTILS-----------DVVTNERIQLE-TKDILKRIAQAS--------NGNLRVSLLMLESMA 238 (252)
T ss_dssp -EEECCCCCHHHHHHHHH-----------HHHHHHTCEEC-CSHHHHHHHHHH--------TTCHHHHHHHHTHHH
T ss_pred -eeeecccchhhHHHHHH-----------HHHHHcCCCCC-cHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Confidence 67999999999999984 23445676543 578999998877 578898888777654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.37 E-value=6.5e-13 Score=142.84 Aligned_cols=152 Identities=14% Similarity=0.121 Sum_probs=90.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcc--cCCCCCCchhhhCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH--LAKPSDLIPELQGR 496 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~--~~~p~~l~pel~~R 496 (1165)
...++++||+|.+...... ...+...|..+++-.. ......+..+|+..+.. ........|.+.+|
T Consensus 132 ~~~~~iide~d~l~~~~~~-------~~~~~~~l~~l~~~l~-----~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r 199 (287)
T d1w5sa2 132 HYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEEIP-----SRDGVNRIGFLLVASDVRALSYMREKIPQVESQ 199 (287)
T ss_dssp CEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHHSC-----CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT
T ss_pred CccccceeEEEEecccccc-------chhHHHHHHHHHHhcc-----hhhcccceeEEeecccHHHHHHHHhhccchhcc
Confidence 4668899999999866443 1112223333332100 00111222233322111 11122356889999
Q ss_pred CCeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHH
Q psy2392 497 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 497 ~~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~ 576 (1165)
++..+.|.+++.+++.+|++. .++.......|++++++.+|+.+..+. ...+.+|...+++...++.
T Consensus 200 ~~~~i~f~~y~~~el~~Il~~-----------r~~~~~~~~~~~~~al~~ia~~~~~~~--~~~gd~R~ai~~l~~a~~~ 266 (287)
T d1w5sa2 200 IGFKLHLPAYKSRELYTILEQ-----------RAELGLRDTVWEPRHLELISDVYGEDK--GGDGSARRAIVALKMACEM 266 (287)
T ss_dssp CSEEEECCCCCHHHHHHHHHH-----------HHHHHBCTTSCCHHHHHHHHHHHCGGG--TSCCCHHHHHHHHHHHHHH
T ss_pred cceeeeccCCcHHHHHHHHhh-----------hHHHhhccCCCCHHHHHHHHHHHhccc--cCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999951 122223344689999999999886531 1245689888888877655
Q ss_pred hhcccCCCeeEEcccccccccc
Q psy2392 577 VSFNSNNISLLVDADYVNSRLG 598 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~ 598 (1165)
...+-. -.||.+.|++++.
T Consensus 267 A~~~~~---~~It~~~V~~A~~ 285 (287)
T d1w5sa2 267 AEAMGR---DSLSEDLVRKAVS 285 (287)
T ss_dssp HHHTTC---SSCCHHHHHHHHH
T ss_pred HHHcCC---CCCCHHHHHHHHh
Confidence 433322 3588888876553
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=4.7e-13 Score=142.88 Aligned_cols=93 Identities=18% Similarity=0.285 Sum_probs=72.4
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..+++|||+|.+... .|..|+.++|.. ..++.||++. +.+..+.|.|++|| .
T Consensus 132 ~~iiiide~d~l~~~-------------~~~~l~~~~e~~----------~~~~~~Il~t----n~~~~i~~~l~sR~-~ 183 (252)
T d1sxje2 132 YKCVIINEANSLTKD-------------AQAALRRTMEKY----------SKNIRLIMVC----DSMSPIIAPIKSQC-L 183 (252)
T ss_dssp CEEEEEECTTSSCHH-------------HHHHHHHHHHHS----------TTTEEEEEEE----SCSCSSCHHHHTTS-E
T ss_pred ceEEEeccccccccc-------------cchhhhcccccc----------cccccceeee----ccccchhhhhhcch-h
Confidence 348999999998665 577899988853 3445667664 46778899999999 4
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
++.|++++.+++.++|. .++..||+.+ .++++++.||+.+.
T Consensus 184 ~i~~~~~~~~~~~~~l~-----------~i~~~e~~~~-~~~~~l~~i~~~s~ 224 (252)
T d1sxje2 184 LIRCPAPSDSEISTILS-----------DVVTNERIQL-ETKDILKRIAQASN 224 (252)
T ss_dssp EEECCCCCHHHHHHHHH-----------HHHHHHTCEE-CCSHHHHHHHHHHT
T ss_pred eeeecccchhhHHHHHH-----------HHHHHcCCCC-CcHHHHHHHHHHcC
Confidence 68999999999999998 4456678754 36889999998764
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3.9e-12 Score=133.27 Aligned_cols=98 Identities=11% Similarity=0.168 Sum_probs=77.1
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
...|++|||+|+++.. .|+.||.+||. ...|+.||++. ++++.+.|.+++|+
T Consensus 108 ~~kviIide~d~l~~~-------------a~n~Llk~lEe----------p~~~~~fIl~t----~~~~~ll~tI~SRc- 159 (207)
T d1a5ta2 108 GAKVVWVTDAALLTDA-------------AANALLKTLEE----------PPAETWFFLAT----REPERLLATLRSRC- 159 (207)
T ss_dssp SCEEEEESCGGGBCHH-------------HHHHHHHHHTS----------CCTTEEEEEEE----SCGGGSCHHHHTTS-
T ss_pred ccceEEechhhhhhhh-------------hhHHHHHHHHh----------hcccceeeeee----cChhhhhhhhccee-
Confidence 4669999999999866 67799999996 35677788763 57788999999999
Q ss_pred eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 499 IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 499 ~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
..+.|.+++.+++..+|++ .+.+++++++.+++.+ ++..|.+.+++
T Consensus 160 ~~i~~~~~~~~~~~~~L~~------------------~~~~~~~~~~~i~~~s--------~Gs~r~al~~l 205 (207)
T d1a5ta2 160 RLHYLAPPPEQYAVTWLSR------------------EVTMSQDALLAALRLS--------AGSPGAALALF 205 (207)
T ss_dssp EEEECCCCCHHHHHHHHHH------------------HCCCCHHHHHHHHHHT--------TTCHHHHHHTT
T ss_pred EEEecCCCCHHHHHHHHHH------------------cCCCCHHHHHHHHHHc--------CCCHHHHHHHh
Confidence 5679999999999888841 1256899999999876 45566665543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=6.5e-14 Score=144.95 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=55.8
Q ss_pred ccccccCcccccceee--eeecCCeEEEEccCHHHHHHhhhccchhhhhhccccceEEecCCCHHHHHHHHH
Q psy2392 9 SAKDSGMEKFQGTTIL--SVRRGNKVSLGGDGQVTFGNVIMKNSAKKVRKLYQNQVLAGIAGSTADAFTLLD 78 (1165)
Q Consensus 9 ~~~~~~~~~~~~~~~l--aLARGel~~IgATT~~Eyr~~IekD~Al~RR~lFq~~V~~v~Eps~~~t~~IL~ 78 (1165)
+++.+. +.+|++|+| +|+||+|+||||||++||++||++|+||.|| || +|. |+|||.++|+.||+
T Consensus 129 ~~g~~~-g~~d~~~~Lkp~L~rg~l~~IgatT~eey~~~~e~d~aL~rr--F~-~I~-V~Ep~~e~t~~IL~ 195 (195)
T d1jbka_ 129 GAGKAD-GAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERR--FQ-KVF-VAEPSVEDTIAILR 195 (195)
T ss_dssp T-------CCCCHHHHHHHHHTTSCCEEEEECHHHHHHHTTTCHHHHTT--EE-EEE-CCCCCHHHHHTTCC
T ss_pred cCCCCC-CcccHHHHHHHHHhCCCceEEecCCHHHHHHHHHcCHHHHhc--CC-Eee-cCCCCHHHHHHHhC
Confidence 455443 568999999 9999999999999999999999999999999 99 665 99999999999985
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.31 E-value=5.9e-12 Score=134.41 Aligned_cols=148 Identities=13% Similarity=0.098 Sum_probs=89.3
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCC-
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRF- 497 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~- 497 (1165)
...++++|++|.+..... ..+..+++-. ......++.||+++.- ......+.|.+.+|+
T Consensus 124 ~~~~~~~~~~d~~~~~~~-------------~~~~~~~~~~------~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~r~~ 183 (276)
T d1fnna2 124 LYMFLVLDDAFNLAPDIL-------------STFIRLGQEA------DKLGAFRIALVIVGHN-DAVLNNLDPSTRGIMG 183 (276)
T ss_dssp CCEEEEEETGGGSCHHHH-------------HHHHHHTTCH------HHHSSCCEEEEEEESS-THHHHTSCHHHHHHHT
T ss_pred cccccchhHHHHhhhhhh-------------hhHHHHHhcc------ccccccceEEeecCCc-hhhhhhcchhhhhhhc
Confidence 466888999998875522 1222222211 1112334556665431 111235778888875
Q ss_pred CeeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhcccc-CCccCcchhHHHHHHHHHH
Q psy2392 498 PIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINER-TENIGARRLYTAMEKLLEE 576 (1165)
Q Consensus 498 ~~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~-~~~~GAR~l~~~ie~~l~~ 576 (1165)
+..|.|.+++.+++.+||.. .+...+....+++++++.|++.+...... ...+.+|.+.+++++++..
T Consensus 184 ~~~i~~~~~~~~e~~~il~~-----------r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R~a~~ll~~a~~~ 252 (276)
T d1fnna2 184 KYVIRFSPYTKDQIFDILLD-----------RAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 252 (276)
T ss_dssp TCEEECCCCBHHHHHHHHHH-----------HHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred chhccccchhHHHHHHHHHH-----------HHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHHHHHHHHHHHHHH
Confidence 45689999999999999941 12222334457999999999987432111 1235589999999888765
Q ss_pred hhcccCCCeeEEcccccccccccC
Q psy2392 577 VSFNSNNISLLVDADYVNSRLGDL 600 (1165)
Q Consensus 577 ~~~~~~~~~~~i~~~~v~~~~~~~ 600 (1165)
...+-. -.|+.+.|+++..++
T Consensus 253 A~~~~~---~~I~~edv~~A~~~~ 273 (276)
T d1fnna2 253 AQQNGR---KHIAPEDVRKSSKEV 273 (276)
T ss_dssp HHHTTC---SSCCHHHHHHHHHHH
T ss_pred HHHcCC---CCcCHHHHHHHHHHH
Confidence 433322 247888887765543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.1e-11 Score=127.60 Aligned_cols=87 Identities=13% Similarity=0.210 Sum_probs=71.0
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++|||+|++... .|+.||.+||.. ..|+.||+.. ++++.++|.+++|| .
T Consensus 109 ~kviIide~d~l~~~-------------a~n~Llk~lEep----------~~~~~fIl~t----~~~~~ll~tI~SRc-~ 160 (207)
T d1a5ta2 109 AKVVWVTDAALLTDA-------------AANALLKTLEEP----------PAETWFFLAT----REPERLLATLRSRC-R 160 (207)
T ss_dssp CEEEEESCGGGBCHH-------------HHHHHHHHHTSC----------CTTEEEEEEE----SCGGGSCHHHHTTS-E
T ss_pred cceEEechhhhhhhh-------------hhHHHHHHHHhh----------cccceeeeee----cChhhhhhhhccee-E
Confidence 459999999999876 899999999963 4556676653 57788999999999 5
Q ss_pred EEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHh
Q psy2392 1098 RVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAY 1150 (1165)
Q Consensus 1098 ~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~ 1150 (1165)
.+.|.+++.+++..+|++ .+.++++++..|++.|.
T Consensus 161 ~i~~~~~~~~~~~~~L~~------------------~~~~~~~~~~~i~~~s~ 195 (207)
T d1a5ta2 161 LHYLAPPPEQYAVTWLSR------------------EVTMSQDALLAALRLSA 195 (207)
T ss_dssp EEECCCCCHHHHHHHHHH------------------HCCCCHHHHHHHHHHTT
T ss_pred EEecCCCCHHHHHHHHHH------------------cCCCCHHHHHHHHHHcC
Confidence 679999999999888861 12468999999998775
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.23 E-value=2.6e-11 Score=135.57 Aligned_cols=132 Identities=18% Similarity=0.305 Sum_probs=81.7
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeee-ce--eecCceEEEEEeCCcccCCCCCCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTK-YG--IIKTDHILFIASGAFHLAKPSDLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~-~~--~~~t~~ilfI~~gaf~~~~p~~l~pel~~ 495 (1165)
..||+|||||.++.++ +|+.||..||.+.++.. .| ..--.+.++|+|.+ ..+..+.+.++.
T Consensus 127 ~~gvl~iDEi~~~~~~-------------~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~N---p~~~~l~~~llD 190 (333)
T d1g8pa_ 127 NRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGN---PEEGDLRPQLLD 190 (333)
T ss_dssp TTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEEC---SCSCCCCHHHHT
T ss_pred cccEeecccHHHHHHH-------------HHHHHhhhhcCCeEEecccCceecCCCCEEEEEecC---ccccccccchhh
Confidence 5799999999999776 88899999997766542 22 11123456677643 223569999999
Q ss_pred CCCeeEecCCCC-HHHHHHHHhhhhH------hHHHH--------HHHH--HhhcCCeeEeCHHHHHHHHHHHHhccccC
Q psy2392 496 RFPIRVELDSLS-ISDFTRIMTSTNV------CLTKQ--------YEAL--LATEGIKIEFVDDGIQRLAEIAYCINERT 558 (1165)
Q Consensus 496 R~~~~v~~~~L~-~~~l~~Il~~~~~------~l~~~--------~~~l--l~~~~i~l~~~~~a~~~la~~a~~~~~~~ 558 (1165)
||++.|.+..+. .++..+++..... ....+ .... ....-..+.++++....++..+...
T Consensus 191 Rf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~---- 266 (333)
T d1g8pa_ 191 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIAL---- 266 (333)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHS----
T ss_pred hhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHc----
Confidence 999999988664 3433334321100 00000 0000 0111123567888888888888774
Q ss_pred CccCcchhHHHH
Q psy2392 559 ENIGARRLYTAM 570 (1165)
Q Consensus 559 ~~~GAR~l~~~i 570 (1165)
...+.|....++
T Consensus 267 ~~~S~R~~~~ll 278 (333)
T d1g8pa_ 267 GSDGLRGELTLL 278 (333)
T ss_dssp SSCSHHHHHHHH
T ss_pred CCCChHHHHHHH
Confidence 344788888776
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.20 E-value=2.1e-11 Score=136.41 Aligned_cols=120 Identities=17% Similarity=0.272 Sum_probs=74.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCcccee-eeee--ccCceEEEEecCCCCCCCCCCCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNT-KYGI--IKTDHILFIASGAFHLAKPSDLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~-k~~~--~~t~~ilfI~~gaf~~~~p~dl~pel~g 1093 (1165)
+.||+|||||.++... +|..||..||...++. +.|. ..-.+.++|++.+ ..+..+.+.++.
T Consensus 127 ~~gvl~iDEi~~~~~~-------------~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~N---p~~~~l~~~llD 190 (333)
T d1g8pa_ 127 NRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGN---PEEGDLRPQLLD 190 (333)
T ss_dssp TTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEEC---SCSCCCCHHHHT
T ss_pred cccEeecccHHHHHHH-------------HHHHHhhhhcCCeEEecccCceecCCCCEEEEEecC---ccccccccchhh
Confidence 6799999999999876 9999999999776653 2221 1123455666644 344679999999
Q ss_pred cCCeEEEcCCCC-HHHHHHHHhhhHH----------------HhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1094 RFPIRVELDSLS-ISDFTRIMTSTNV----------------CLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1094 R~~i~v~l~~l~-~~~l~~il~~~~~----------------~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
||.+++.+..+. .++...++..... ..+.+........--++.++++....++..+...
T Consensus 191 Rf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~ 266 (333)
T d1g8pa_ 191 RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIAL 266 (333)
T ss_dssp TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHS
T ss_pred hhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHHHHHhhcccceecCHHHHHHHHHHHHHc
Confidence 999999998764 3443344331110 0000000000111123567888888888887765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.11 E-value=3.2e-10 Score=120.62 Aligned_cols=64 Identities=25% Similarity=0.319 Sum_probs=48.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcC----CCeEEEecCCc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN----APFIKIEATKF 852 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~----~~fi~l~~se~ 852 (1165)
+.++|++..++.+..++...++..+ ..+++++|+||||||||++++.+++.+. ..++.+++..+
T Consensus 16 ~~l~~Re~ei~~l~~~l~~~l~~~~--------~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~ 83 (276)
T d1fnna2 16 KRLPHREQQLQQLDILLGNWLRNPG--------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 83 (276)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTT--------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCC--------CCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh
Confidence 4678999999999988865422221 1258999999999999999999999983 44566666554
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.11 E-value=8.9e-11 Score=125.79 Aligned_cols=112 Identities=13% Similarity=0.126 Sum_probs=67.5
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCC--CCCCCCCchhhhcc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFH--LAKPSDLIPELQGR 1094 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~--~~~p~dl~pel~gR 1094 (1165)
...++++||+|.+...... ...+...|..++|--. ......+..+|+..... ........|.+.+|
T Consensus 132 ~~~~~iide~d~l~~~~~~-------~~~~~~~l~~l~~~l~-----~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r 199 (287)
T d1w5sa2 132 HYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEEIP-----SRDGVNRIGFLLVASDVRALSYMREKIPQVESQ 199 (287)
T ss_dssp CEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHHSC-----CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT
T ss_pred CccccceeEEEEecccccc-------chhHHHHHHHHHHhcc-----hhhcccceeEEeecccHHHHHHHHhhccchhcc
Confidence 3458899999999876432 1113344444443110 11112233333332211 11122356889999
Q ss_pred CCeEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhc
Q psy2392 1095 FPIRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYC 1151 (1165)
Q Consensus 1095 ~~i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~ 1151 (1165)
++.++.|++++.+++.+|++ . .++.......|++++++.||+.+..
T Consensus 200 ~~~~i~f~~y~~~el~~Il~----~-------r~~~~~~~~~~~~~al~~ia~~~~~ 245 (287)
T d1w5sa2 200 IGFKLHLPAYKSRELYTILE----Q-------RAELGLRDTVWEPRHLELISDVYGE 245 (287)
T ss_dssp CSEEEECCCCCHHHHHHHHH----H-------HHHHHBCTTSCCHHHHHHHHHHHCG
T ss_pred cceeeeccCCcHHHHHHHHh----h-------hHHHhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999998 1 1222233446899999999998854
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.01 E-value=9.5e-10 Score=118.00 Aligned_cols=130 Identities=19% Similarity=0.275 Sum_probs=85.4
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeece-eecCceEEEEEeCCccc---CCCCCCchhhh
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG-IIKTDHILFIASGAFHL---AKPSDLIPELQ 494 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~-~~~t~~ilfI~~gaf~~---~~p~~l~pel~ 494 (1165)
++|.+||||||.+... .|..|+..++...+.-..+ .....++-+|+++.... .....|.++|.
T Consensus 94 ~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L~ 160 (247)
T d1ny5a2 94 DGGTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLY 160 (247)
T ss_dssp TTSEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred CCCEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEECCCCCceecCeEEEEecCCCHHHHHHcCCCcHHHH
Confidence 6899999999999766 6778998887544321100 11122455666643221 11125888999
Q ss_pred CCCC-eeEecCCCC--HHHHHHHHhhhhHhHHHHHHHHHhhcCCe-eEeCHHHHHHHHHHHHhccccCCccCcchhHHHH
Q psy2392 495 GRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIK-IEFVDDGIQRLAEIAYCINERTENIGARRLYTAM 570 (1165)
Q Consensus 495 ~R~~-~~v~~~~L~--~~~l~~Il~~~~~~l~~~~~~ll~~~~i~-l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~i 570 (1165)
.||. ..|.++||. .+|+..|+ ..++.++.... +.. ..|+++|++.|..+.. .+..|-|++++
T Consensus 161 ~~l~~~~i~lPpLreR~~Di~~l~----~~~l~~~~~~~---~~~~~~ls~~al~~L~~~~W-------PGNl~EL~~~l 226 (247)
T d1ny5a2 161 YRLGVIEIEIPPLRERKEDIIPLA----NHFLKKFSRKY---AKEVEGFTKSAQELLLSYPW-------YGNVRELKNVI 226 (247)
T ss_dssp HHHTTEEEECCCGGGCHHHHHHHH----HHHHHHHHHHT---TCCCCEECHHHHHHHHHSCC-------TTHHHHHHHHH
T ss_pred hhcCeeeecCCChhhchhhHhhhh----hhhhhhhhhhc---CCCCCCCCHHHHHHHHhCCC-------CCHHHHHHHHH
Confidence 8865 558899995 57888887 45555444333 333 4699999999975442 24578999999
Q ss_pred HHHHH
Q psy2392 571 EKLLE 575 (1165)
Q Consensus 571 e~~l~ 575 (1165)
++++.
T Consensus 227 ~~a~~ 231 (247)
T d1ny5a2 227 ERAVL 231 (247)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=98.93 E-value=1.8e-09 Score=115.71 Aligned_cols=116 Identities=21% Similarity=0.311 Sum_probs=77.8
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeee--eccCceEEEEecCCCCC---CCCCCCchhh
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYG--IIKTDHILFIASGAFHL---AKPSDLIPEL 1091 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~--~~~t~~ilfI~~gaf~~---~~p~dl~pel 1091 (1165)
+.|.+||||||.+... +|..|+.+++...+. +.| ...+.++-+|++..... .....|.++|
T Consensus 94 ~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~-~~~~~~~~~~~~RlI~~s~~~l~~l~~~~~f~~~L 159 (247)
T d1ny5a2 94 DGGTLFLDEIGELSLE-------------AQAKLLRVIESGKFY-RLGGRKEIEVNVRILAATNRNIKELVKEGKFREDL 159 (247)
T ss_dssp TTSEEEEESGGGCCHH-------------HHHHHHHHHHHSEEC-CBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred CCCEEEEeChHhCCHH-------------HHHHHHHHHHhCCEE-ECCCCCceecCeEEEEecCCCHHHHHHcCCCcHHH
Confidence 6899999999999776 899999999854432 112 11122455676654221 1113578899
Q ss_pred hccCC-eEEEcCCCC--HHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHHHhcc
Q psy2392 1092 QGRFP-IRVELDSLS--ISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCI 1152 (1165)
Q Consensus 1092 ~gR~~-i~v~l~~l~--~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~a~~~ 1152 (1165)
..||. +.|.++||. .+|+..|+. .++.++..-.+..- ..|+++|++.|.......
T Consensus 160 ~~~l~~~~i~lPpLreR~~Di~~l~~----~~l~~~~~~~~~~~--~~ls~~al~~L~~~~WPG 217 (247)
T d1ny5a2 160 YYRLGVIEIEIPPLRERKEDIIPLAN----HFLKKFSRKYAKEV--EGFTKSAQELLLSYPWYG 217 (247)
T ss_dssp HHHHTTEEEECCCGGGCHHHHHHHHH----HHHHHHHHHTTCCC--CEECHHHHHHHHHSCCTT
T ss_pred HhhcCeeeecCCChhhchhhHhhhhh----hhhhhhhhhcCCCC--CCCCHHHHHHHHhCCCCC
Confidence 99964 568999995 578988888 66666554443322 369999999997665544
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.79 E-value=1.1e-08 Score=106.04 Aligned_cols=61 Identities=11% Similarity=0.249 Sum_probs=47.5
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCCCCchhhhCCCC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFP 498 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~~l~pel~~R~~ 498 (1165)
++.|++|||+|+++.. .|++||+.||.. ..|.+||.. +++|+.+.|.+++|+.
T Consensus 79 ~~KviIId~ad~l~~~-------------aqNaLLK~LEEP----------p~~t~fiLi----t~~~~~ll~TI~SRC~ 131 (198)
T d2gnoa2 79 TRKYVIVHDCERMTQQ-------------AANAFLKALEEP----------PEYAVIVLN----TRRWHYLLPTIKSRVF 131 (198)
T ss_dssp SSEEEEETTGGGBCHH-------------HHHHTHHHHHSC----------CTTEEEEEE----ESCGGGSCHHHHTTSE
T ss_pred CCEEEEEeCccccchh-------------hhhHHHHHHhCC----------CCCceeeec----cCChhhCHHHHhcceE
Confidence 4569999999999877 677999999962 345566655 3577889999999996
Q ss_pred eeEecCCCC
Q psy2392 499 IRVELDSLS 507 (1165)
Q Consensus 499 ~~v~~~~L~ 507 (1165)
. +.|++++
T Consensus 132 ~-i~~~~p~ 139 (198)
T d2gnoa2 132 R-VVVNVPK 139 (198)
T ss_dssp E-EECCCCH
T ss_pred E-EeCCCch
Confidence 5 5787664
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=98.75 E-value=2.3e-08 Score=104.68 Aligned_cols=109 Identities=18% Similarity=0.303 Sum_probs=69.9
Q ss_pred cceEEEEecchhhhccCCCCCCCccchhhhhhhhcccccCceeeeeceeecCceEEEEEeCCcccCCCC---CCchhhhC
Q psy2392 419 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 495 (1165)
Q Consensus 419 ~~~IifiDEidki~~~~~~~~~~~~~~~~vq~~lL~~~Eg~~v~~~~~~~~t~~ilfI~~gaf~~~~p~---~l~pel~~ 495 (1165)
...+++||+||.+.... ..|..|.-++... ......++|++. ..|. .+.|-|.+
T Consensus 97 ~~dll~iDDi~~i~~~~-----------~~~~~lf~lin~~--------~~~~~~iiits~----~~p~~l~~~~~dL~S 153 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTL--------YLLEKQIILASD----RHPQKLDGVSDRLVS 153 (213)
T ss_dssp TCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHH--------HHTTCEEEEEES----SCGGGCTTSCHHHHH
T ss_pred hccchhhhhhhhhcCch-----------HHHHHHHHHHHHH--------hhccceEEEecC----CcchhccccchHHHH
Confidence 46799999999997542 2555676666531 122233344442 2343 36688999
Q ss_pred CCC--eeEecCCCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHH
Q psy2392 496 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKL 573 (1165)
Q Consensus 496 R~~--~~v~~~~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~ 573 (1165)
||. ..+.++ ++.+++.+||+ +.+..+|+ .++++++++|++.. -+.|.|..+|..+
T Consensus 154 RL~~g~~~~i~-p~d~~~~~iL~-----------~~a~~rgl--~l~~~v~~yl~~~~---------~~~R~L~~~l~~l 210 (213)
T d1l8qa2 154 RFEGGILVEIE-LDNKTRFKIIK-----------EKLKEFNL--ELRKEVIDYLLENT---------KNVREIEGKIKLI 210 (213)
T ss_dssp HHHTSEEEECC-CCHHHHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHHC---------SSHHHHHHHHHHH
T ss_pred HhhCceEEEEC-CCcHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhc---------CcHHHHHHHHHHh
Confidence 865 566775 57778888873 22345564 78899999998753 1467777777654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=98.59 E-value=9.8e-08 Score=99.74 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=64.3
Q ss_pred cCCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCC---CCchhhhc
Q psy2392 1017 QNGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPS---DLIPELQG 1093 (1165)
Q Consensus 1017 ~~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~---dl~pel~g 1093 (1165)
+-.+++||+||.+++.. ..|..|.-++... ......++|++.. .|. .+.|-|.+
T Consensus 97 ~~dll~iDDi~~i~~~~-----------~~~~~lf~lin~~--------~~~~~~iiits~~----~p~~l~~~~~dL~S 153 (213)
T d1l8qa2 97 SVDLLLLDDVQFLSGKE-----------RTQIEFFHIFNTL--------YLLEKQIILASDR----HPQKLDGVSDRLVS 153 (213)
T ss_dssp TCSEEEEECGGGGTTCH-----------HHHHHHHHHHHHH--------HHTTCEEEEEESS----CGGGCTTSCHHHHH
T ss_pred hccchhhhhhhhhcCch-----------HHHHHHHHHHHHH--------hhccceEEEecCC----cchhccccchHHHH
Confidence 45699999999998652 3677777776632 1222333333322 343 35688999
Q ss_pred cCC--eEEEcCCCCHHHHHHHHhhhHHHhHHHHHHHHhhcCCceEeCHHHHHHHHHH
Q psy2392 1094 RFP--IRVELDSLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEI 1148 (1165)
Q Consensus 1094 R~~--i~v~l~~l~~~~l~~il~~~~~~l~~q~~~l~~~egv~l~~~~~ai~~ia~~ 1148 (1165)
||. ..+.++ ++.++..+||+ ..+...|+ .++++++++|++.
T Consensus 154 RL~~g~~~~i~-p~d~~~~~iL~-----------~~a~~rgl--~l~~~v~~yl~~~ 196 (213)
T d1l8qa2 154 RFEGGILVEIE-LDNKTRFKIIK-----------EKLKEFNL--ELRKEVIDYLLEN 196 (213)
T ss_dssp HHHTSEEEECC-CCHHHHHHHHH-----------HHHHHTTC--CCCHHHHHHHHHH
T ss_pred HhhCceEEEEC-CCcHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHh
Confidence 964 567886 57788888888 34455676 7889999999875
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=8.3e-08 Score=99.22 Aligned_cols=60 Identities=12% Similarity=0.239 Sum_probs=46.8
Q ss_pred CCeeeehhhhhhhccCCCCCCCCccchhhhhhccccccCccceeeeeeccCceEEEEecCCCCCCCCCCCchhhhccCCe
Q psy2392 1018 NGIIFLDEIDKITTRSSQNNNTDISRAGVQRDLLPLVEGTTVNTKYGIIKTDHILFIASGAFHLAKPSDLIPELQGRFPI 1097 (1165)
Q Consensus 1018 ~gIvfiDEiDki~~~~~~~~~~~~~~~gvq~~lL~~~Eg~~v~~k~~~~~t~~ilfI~~gaf~~~~p~dl~pel~gR~~i 1097 (1165)
..|++|||+|+++.. .|+.||+++|...-+| .||.. +++|+.++|.+++||-+
T Consensus 80 ~KviIId~ad~l~~~-------------aqNaLLK~LEEPp~~t----------~fiLi----t~~~~~ll~TI~SRC~~ 132 (198)
T d2gnoa2 80 RKYVIVHDCERMTQQ-------------AANAFLKALEEPPEYA----------VIVLN----TRRWHYLLPTIKSRVFR 132 (198)
T ss_dssp SEEEEETTGGGBCHH-------------HHHHTHHHHHSCCTTE----------EEEEE----ESCGGGSCHHHHTTSEE
T ss_pred CEEEEEeCccccchh-------------hhhHHHHHHhCCCCCc----------eeeec----cCChhhCHHHHhcceEE
Confidence 359999999999987 8899999999754333 44443 35788899999999965
Q ss_pred EEEcCCCC
Q psy2392 1098 RVELDSLS 1105 (1165)
Q Consensus 1098 ~v~l~~l~ 1105 (1165)
+.|+++.
T Consensus 133 -i~~~~p~ 139 (198)
T d2gnoa2 133 -VVVNVPK 139 (198)
T ss_dssp -EECCCCH
T ss_pred -EeCCCch
Confidence 5787664
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=98.57 E-value=1.1e-08 Score=115.53 Aligned_cols=43 Identities=21% Similarity=0.203 Sum_probs=38.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCccccccc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEVGYV 858 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~Gyv 858 (1165)
+.++||+||||||||++|+++|+.++.+|+.+++|+..+..|+
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l 196 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFEL 196 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHH
Confidence 4799999999999999999999999999999999986655333
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.33 E-value=2.1e-07 Score=98.84 Aligned_cols=41 Identities=24% Similarity=0.449 Sum_probs=38.0
Q ss_pred CCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 815 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 815 ~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
.|.++||+||||||||++|+++|+.++.+|+.+++++|.+.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~ 71 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 71 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHH
Confidence 36899999999999999999999999999999999998764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.28 E-value=3.3e-07 Score=97.32 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=37.4
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 256 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~ 256 (1165)
.|.++||+||||||||++|++||+.++.+|+.+++++|..
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~ 70 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence 4689999999999999999999999999999999998865
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.22 E-value=9.3e-06 Score=85.24 Aligned_cols=56 Identities=21% Similarity=0.291 Sum_probs=45.3
Q ss_pred ccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccccc
Q psy2392 183 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTE 256 (1165)
Q Consensus 183 ~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~ 256 (1165)
++++|.++-++.+.+. ....++++||+|||||+|++.+++.++..+..+++..+..
T Consensus 12 ~~f~GR~~el~~l~~~------------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~ 67 (283)
T d2fnaa2 12 KDFFDREKEIEKLKGL------------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEE 67 (283)
T ss_dssp GGSCCCHHHHHHHHHT------------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTT
T ss_pred hhCCChHHHHHHHHhc------------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccc
Confidence 5788988877765432 1268999999999999999999999999998888876644
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.16 E-value=4.7e-06 Score=87.60 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=46.3
Q ss_pred hcccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 781 KYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 781 ~~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
++++|.++.++.+... . ...++++||+|||||+|++.+++.++.++..+++..+...
T Consensus 12 ~~f~GR~~el~~l~~~---~---------------~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~ 68 (283)
T d2fnaa2 12 KDFFDREKEIEKLKGL---R---------------APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 68 (283)
T ss_dssp GGSCCCHHHHHHHHHT---C---------------SSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTC
T ss_pred hhCCChHHHHHHHHhc---c---------------CCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEecccccc
Confidence 6788998887776432 0 3678999999999999999999999999999888776544
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=98.05 E-value=1.5e-06 Score=97.69 Aligned_cols=77 Identities=17% Similarity=0.078 Sum_probs=53.4
Q ss_pred HHHHHHHHhcccEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 173 VIAEIVSELDKYVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 173 ~~~~l~~~L~~~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
.-..+...|+..+.|++.++-. .+.. +.+ + .| ++..+||+||||||||++|+++|+.++.+|+.++++
T Consensus 121 ~~~~il~~l~~~~~~~~~~i~~---~l~~-~~~-~-----~~--~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s 188 (362)
T d1svma_ 121 EWMAGVAWLHCLLPKMDSVVYD---FLKC-MVY-N-----IP--KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLP 188 (362)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHH---HHHH-HHH-C-----CT--TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSC
T ss_pred HHHHHHHHHHhcccchHHHHHH---HHHH-HHh-C-----CC--CcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECc
Confidence 3445556666667677655533 3322 111 1 11 346999999999999999999999999999999999
Q ss_pred ccccccccc
Q psy2392 253 KFTEVGYVG 261 (1165)
Q Consensus 253 ~~~~~GyvG 261 (1165)
+..+.-|+|
T Consensus 189 ~~rs~~~l~ 197 (362)
T d1svma_ 189 LDRLNFELG 197 (362)
T ss_dssp TTTHHHHHG
T ss_pred chhhHHHHH
Confidence 876543343
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=1.1e-05 Score=77.66 Aligned_cols=30 Identities=43% Similarity=0.824 Sum_probs=27.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
++++|.|||||||||+|+.||+.++.+|+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id 32 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 32 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 679999999999999999999999998864
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.64 E-value=5.7e-06 Score=81.50 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=34.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcccc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 855 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~~~ 855 (1165)
++.|++.|||||||||+|++||+.++.+++..++..+...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~~~ 46 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFE 46 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHhhh
Confidence 4889999999999999999999999999887776665543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.63 E-value=6.6e-06 Score=81.02 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=35.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccccccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFTEV 257 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~~~~ 257 (1165)
++.++|.|||||||||||++||+.++.+++..++..+...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~~~ 46 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFE 46 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHhhh
Confidence 4899999999999999999999999999888777666553
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=9.1e-06 Score=78.24 Aligned_cols=33 Identities=39% Similarity=0.757 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
++++|+|||||||||+|+.||+.++.+|+..+.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~ 35 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 35 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEeech
Confidence 579999999999999999999999988874443
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.41 E-value=2.5e-05 Score=76.25 Aligned_cols=30 Identities=43% Similarity=0.710 Sum_probs=27.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.+++|.|||||||||+|+.||+.++.+++.
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~ 34 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKSGLKYIN 34 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCcEEe
Confidence 578999999999999999999999988765
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.39 E-value=2.6e-05 Score=76.11 Aligned_cols=31 Identities=42% Similarity=0.720 Sum_probs=27.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.+++|+|||||||||+|+.||+.++.+++..
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~ 35 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKSGLKYINV 35 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence 5789999999999999999999998877643
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=3.1e-05 Score=76.32 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=28.1
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+++|+|||||||||+++.||+.++.+|+.+|
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D 33 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence 5778899999999999999999999998655
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.38 E-value=3.2e-05 Score=76.29 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=27.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.++|+|||||||||+++.||+.++.+|+.+|
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~D 33 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 33 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence 4778899999999999999999999998544
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.37 E-value=2.9e-05 Score=76.51 Aligned_cols=32 Identities=44% Similarity=0.632 Sum_probs=28.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
++++|+|||||||||+++.||+.++.+|+.+|
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d 32 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD 32 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence 36899999999999999999999999988543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.33 E-value=3.4e-05 Score=76.03 Aligned_cols=31 Identities=42% Similarity=0.618 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+++|+|||||||||+++.||+.++.+|+.+|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d 32 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 32 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence 6899999999999999999999999988655
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.32 E-value=3.8e-05 Score=76.07 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
..++|+|||||||||+|+.||+.+|.+|+..|
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D 34 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEehh
Confidence 56889999999999999999999999988654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.31 E-value=4e-05 Score=75.89 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=28.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
..++|+|||||||||+|+.||+.+|.+|+..|
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D 34 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEehh
Confidence 45889999999999999999999999987543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.29 E-value=4.6e-05 Score=74.61 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=32.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCcc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKFT 853 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~~ 853 (1165)
.-++|.|||||||||+|+.|++.++.+++.++...+.
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~ 41 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLW 41 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHH
Confidence 5688999999999999999999999999999876543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.22 E-value=5.5e-05 Score=74.06 Aligned_cols=36 Identities=31% Similarity=0.552 Sum_probs=32.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
.-++|.|||||||||+|+.|++.++.+++.++...+
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~ 40 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence 568899999999999999999999999999887554
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.21 E-value=0.00012 Score=71.40 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=31.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~s 850 (1165)
.+-++|.||||+||||+|+.|++.++.+++.++..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d 37 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecc
Confidence 36789999999999999999999999988887753
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.20 E-value=0.00011 Score=71.50 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
+.-++|+||||+||||+|++|++.++.+++.++..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d 37 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecc
Confidence 36789999999999999999999999888877753
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=9.1e-05 Score=72.31 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
++-++|+|||||||||+|+.||+.++.+++..+
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d 38 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 38 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence 467889999999999999999999987665444
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=9.5e-05 Score=72.16 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=27.8
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
++-++|+|||||||||+|+.|++.++.+++..
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~ 37 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 37 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeech
Confidence 46788899999999999999999998876543
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.07 E-value=0.00017 Score=70.35 Aligned_cols=27 Identities=37% Similarity=0.521 Sum_probs=24.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
+.+++|.|||||||||+|+.||+.++.
T Consensus 5 ~~~I~i~G~~GsGKTT~~~~La~~l~~ 31 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMAEMIAAELDG 31 (174)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999999975
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.06 E-value=0.00015 Score=70.83 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
++.+++|+|||||||||+|+.||+.++.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~~ 31 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELDG 31 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 3578999999999999999999999853
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.02 E-value=9.4e-05 Score=74.28 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
|..++|.|||||||||+|+.||+.++.+++
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~i 32 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAHI 32 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence 568999999999999999999999976554
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.97 E-value=0.00015 Score=72.65 Aligned_cols=30 Identities=17% Similarity=0.301 Sum_probs=26.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
|-.++|.|||||||||+|+.||+.++.+++
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~i 32 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAHI 32 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence 467999999999999999999999987553
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.97 E-value=0.00018 Score=69.64 Aligned_cols=28 Identities=36% Similarity=0.593 Sum_probs=25.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+-+++.|||||||||+|+.|++.++..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~~~~ 30 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLDNSA 30 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 4689999999999999999999997653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.96 E-value=0.00015 Score=70.19 Aligned_cols=27 Identities=37% Similarity=0.644 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
.-++++|||||||||+|+.||+.++..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~~~ 29 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLDNS 29 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999999654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.95 E-value=0.0001 Score=71.98 Aligned_cols=27 Identities=33% Similarity=0.373 Sum_probs=24.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
..++|+|+|||||||+|++||+.|+..
T Consensus 7 ~~I~l~G~~GsGKTTia~~La~~L~~~ 33 (183)
T d1m8pa3 7 FTIFLTGYMNSGKDAIARALQVTLNQQ 33 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 578899999999999999999999543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.93 E-value=0.00024 Score=71.26 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=27.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
|..|+++|||||||||+|+.||+.+|.+ .++.
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~g~~--~i~~ 37 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDFGWV--HLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCE--EEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCc--eEch
Confidence 5788999999999999999999999864 4444
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.91 E-value=0.00021 Score=71.78 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
+|..+++.|||||||||+|+.||+.+|. .++++
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g~--~~i~~ 37 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFGW--VHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC--ceEch
Confidence 4578999999999999999999999975 45554
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.00031 Score=70.66 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=26.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.+.++|.|||||||||+|+.||+.+|.+++
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g~~~i 37 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHL 37 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 467889999999999999999999976443
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.90 E-value=0.0002 Score=70.73 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=25.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
++++.|||||||||+|+.||+.+|.+++
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i 29 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHI 29 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCcee
Confidence 5889999999999999999999976544
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.88 E-value=0.00029 Score=69.55 Aligned_cols=29 Identities=28% Similarity=0.548 Sum_probs=25.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
++++.|||||||||+|+.||+.++.+++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~ 30 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceec
Confidence 47899999999999999999999876553
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.83 E-value=0.00015 Score=70.67 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
+..|+|+|+|||||||+|++||+.++.
T Consensus 6 g~~I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356889999999999999999999854
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.82 E-value=0.00034 Score=70.40 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
...++|.|||||||||+|+.||+.+|. .++++.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g~--~~is~g 40 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYSF--VHLSAG 40 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSC--EEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC--eEEehh
Confidence 468999999999999999999999965 445543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.82 E-value=0.00031 Score=70.36 Aligned_cols=33 Identities=27% Similarity=0.399 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
...++|.|||||||||+|+.||+.+|. .+++..
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~~g~--~~i~~g 35 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKNFCV--CHLATG 35 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTC--EEEEHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCC--eEEeHH
Confidence 357889999999999999999999964 445543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.79 E-value=0.00037 Score=69.76 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=25.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..++|.|||||||||+|+.||+.+|.+++
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~~g~~~i 32 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKNFCVCHL 32 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 46788999999999999999999986443
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.78 E-value=0.00028 Score=70.07 Aligned_cols=28 Identities=39% Similarity=0.665 Sum_probs=24.7
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+++|.|||||||||+|+.||+.++..++
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i 29 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQI 29 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 6889999999999999999999965544
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00014 Score=72.43 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+..++|+|+|||||||+|+.||+.++.++.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~~ 48 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHGI 48 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 367889999999999999999999965443
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.74 E-value=0.00043 Score=69.64 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=28.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
++.++|.|||||||||+|+.||+.+|. ..+++.+
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~--~~is~g~ 41 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGY--THLSTGD 41 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCC--EEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC--eeEeccH
Confidence 467899999999999999999999976 4455543
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.73 E-value=0.00044 Score=68.60 Aligned_cols=28 Identities=39% Similarity=0.665 Sum_probs=25.0
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+++|.|||||||||+|+.||+.++..++
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i 29 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQI 29 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 5789999999999999999999986544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.71 E-value=0.00047 Score=68.55 Aligned_cols=29 Identities=34% Similarity=0.600 Sum_probs=25.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
.++|.|||||||||+|+.||+.++.+++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is 30 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence 47899999999999999999999876553
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.69 E-value=0.00046 Score=68.60 Aligned_cols=28 Identities=36% Similarity=0.621 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
.++|.|||||||||+|+.||+.++.+++
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~~i 29 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTPHI 29 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCcee
Confidence 5789999999999999999999976544
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.67 E-value=0.00042 Score=69.73 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
+..++|.|||||||||+|+.||+.+|. .++++.+
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~--~~is~g~ 41 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGY--THLSTGD 41 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCC--EEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC--eeEeccH
Confidence 468999999999999999999999864 5556543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.00046 Score=69.11 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=25.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
|..+++.||||+||||.|+.||+.++..+
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~g~~~ 29 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKYGYTH 29 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCce
Confidence 35789999999999999999999997543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00057 Score=66.50 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
++++++||||||||+|++++++.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 589999999999999999999998
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.64 E-value=0.00052 Score=69.16 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=25.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
-.++|+|||||||||+|+.||+.++.+++
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g~~~i 35 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFELKHL 35 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBCCEEE
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 57889999999999999999999986443
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00056 Score=67.70 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.9
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.++|.|||||||||+|+.||+.++.+++
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i 29 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4788999999999999999999987554
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.63 E-value=0.00038 Score=70.19 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
..++|.|||||||||+|+.||+.++. .+++..+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g~--~~is~gd 39 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFEL--KHLSSGD 39 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBCC--EEEEHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHCC--eEEcHHH
Confidence 68999999999999999999999974 4455533
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00043 Score=69.28 Aligned_cols=32 Identities=22% Similarity=0.414 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
|..+++.||||+||||+|+.||+.+|. .+++.
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~g~--~~i~~ 32 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKYGY--THLSA 32 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC--ceEcH
Confidence 357899999999999999999999964 44554
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.62 E-value=0.00037 Score=69.32 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~ 253 (1165)
-.++|.|||||||||+|+.||+.++.+ .+++.+
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~g~~--~i~~~d 35 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERFHAA--HLATGD 35 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCE--EEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc--eEeccc
Confidence 468899999999999999999999654 555543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.62 E-value=0.00022 Score=70.88 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.7
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+..++|+|+|||||||+|+.||+.++.++
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l~~~~ 47 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYLVCHG 47 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 35778999999999999999999986443
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.60 E-value=0.00053 Score=67.83 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
+++|.|||||||||+|+.||+.++..++
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i 29 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQI 29 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 5789999999999999999999965433
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.59 E-value=0.00057 Score=67.90 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=26.4
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
.++|.|||||||||+|+.||+.++.+ .+++.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~--~i~~~d 35 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAA--HLATGD 35 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCE--EEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc--eEeccc
Confidence 57888999999999999999999865 444443
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.00072 Score=65.69 Aligned_cols=24 Identities=29% Similarity=0.747 Sum_probs=22.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
++++++||||||||++++.++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999999999998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=96.43 E-value=0.00067 Score=66.40 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
+++++||||||||||+++++..++.....+.
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~ 32 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW 32 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEE
Confidence 6899999999999999999999965544333
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.00086 Score=67.92 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
+-+.+.|||||||+|+|+.||+.+|.+++
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~gl~~i 32 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQWHLL 32 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 46777899999999999999999987654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.37 E-value=0.00055 Score=68.02 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=25.4
Q ss_pred CCceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 815 TPKNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 815 ~~~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
.|.-++|+|+|||||||+|+.++...+..+
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~~~~~ 42 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH 42 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGGTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCCEE
Confidence 367899999999999999999988776533
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.32 E-value=0.00057 Score=67.93 Aligned_cols=33 Identities=15% Similarity=0.373 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
.|.-++++|+|||||||+|+.++...+. .+++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~~~--~~i~~ 45 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGY--VHVNR 45 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGGTC--EEEEH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCC--EEEch
Confidence 4679999999999999999999877653 44443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=96.31 E-value=0.00099 Score=65.14 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=25.6
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 847 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l 847 (1165)
++++.||||||||||+++++..+..+...+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~ 31 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGF 31 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceE
Confidence 489999999999999999999997655433
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0011 Score=66.96 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
+-+.+.|||||||||+|+.||+.+|.++
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~gl~~ 31 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQWHL 31 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 4778889999999999999999996544
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.21 E-value=0.0011 Score=63.10 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
.-++++||||+||||+|+.|++... .+..++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKNP-GFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-TEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-CCEEechH
Confidence 4688999999999999999877652 24444443
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.17 E-value=0.0022 Score=65.53 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh----CCCceEEecccccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEATKFTE 256 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l----~~~~i~ld~s~~~~ 256 (1165)
+..++|+|.||+||||+|+.|++.+ +.+.+.+|+-.+..
T Consensus 24 g~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 4689999999999999999999766 67888898877644
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.16 E-value=0.0014 Score=66.71 Aligned_cols=27 Identities=30% Similarity=0.474 Sum_probs=23.2
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
.+.+-|||||||||+|+.||+.++.++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~ 31 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTY 31 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 456779999999999999999996653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.15 E-value=0.0013 Score=66.89 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
.+.+-|||||||||+|+.||+.++.+++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~i 32 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYL 32 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3556699999999999999999987654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.13 E-value=0.0014 Score=62.40 Aligned_cols=33 Identities=36% Similarity=0.470 Sum_probs=24.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEecC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 850 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~s 850 (1165)
+-++++||||+||||+|+.|++... .+..++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKNP-GFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-TEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-CCEEechH
Confidence 4588999999999999999877653 24444443
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.07 E-value=0.0026 Score=64.98 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=33.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc----CCCeEEEecCCccc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEATKFTE 854 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l----~~~fi~l~~se~~~ 854 (1165)
+..++|+|.||+||||+|+.|++.+ +.+++.+|+..+..
T Consensus 24 g~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 4678999999999999999999765 67889999877554
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.99 E-value=0.0012 Score=66.05 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
|.-++++|+|||||||+|++||+.++
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999884
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.80 E-value=0.0025 Score=61.95 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
+-+++.|||||||||+++.|++.++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999843
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.74 E-value=0.0033 Score=62.77 Aligned_cols=35 Identities=31% Similarity=0.525 Sum_probs=27.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC---CCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN---APFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~---~~fi~l~~s 850 (1165)
|--++|+|+||+||||+|+.||+.++ .+...++..
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D 39 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG 39 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence 45689999999999999999999884 444455543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.56 E-value=0.0027 Score=61.77 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
+-+++.|||||||||+++.|++.++.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999998843
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0031 Score=60.65 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
+.+.|+|+||||||||++.|++.+
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999987
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.43 E-value=0.003 Score=61.74 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=23.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
-++|.|+|||||||+++.||+.++...+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~~~~ 30 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDNQGI 30 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999965443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.0037 Score=60.03 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=22.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+.+.++|+||||||||++.|++.+
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999887
|
| >d1qzma_ c.37.1.20 (A:) ATPase domain of protease Lon (La) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase domain of protease Lon (La) species: Escherichia coli [TaxId: 562]
Probab=95.16 E-value=0.024 Score=50.40 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHhhhhHhHHHHHHHHHhhcCCeeEeCHHHHHHHHHHHHhccccCCccCcchhHHHHHHHHHHhhcccC-C
Q psy2392 505 SLSISDFTRIMTSTNVCLTKQYEALLATEGIKIEFVDDGIQRLAEIAYCINERTENIGARRLYTAMEKLLEEVSFNSN-N 583 (1165)
Q Consensus 505 ~L~~~~l~~Il~~~~~~l~~~~~~ll~~~~i~l~~~~~a~~~la~~a~~~~~~~~~~GAR~l~~~ie~~l~~~~~~~~-~ 583 (1165)
.++.+|-.+|.+ +.|+..+........-++.|++++++.|++.... ..|.|.|.+.|++++..+....- +
T Consensus 2 GYt~~EK~~Iak---~yLiPk~l~~~gl~~~~i~i~~~~l~~iI~~Ytr------EaGVR~Ler~i~~I~Rk~a~~~~~~ 72 (94)
T d1qzma_ 2 GYTEDEKLNIAK---RHLLPKQIERNALKKGELTVDDSAIIGIIRYYTR------EAGVRGLEREISKLCRKAVKQLLLD 72 (94)
T ss_dssp CCCHHHHHHHHH---HTHHHHHHHHTTCCTTTEEECHHHHHHHHHHHCC------CSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHH---HHhHHHHHHHhccccccccchHHHHHHHHHHHcc------HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 467788888886 6666655444444444699999999999985543 68999999999999888766532 1
Q ss_pred ---CeeEEccccccccccc
Q psy2392 584 ---ISLLVDADYVNSRLGD 599 (1165)
Q Consensus 584 ---~~~~i~~~~v~~~~~~ 599 (1165)
..+.||.+.+.+.|+.
T Consensus 73 ~~~~~~~i~~~~l~~~LG~ 91 (94)
T d1qzma_ 73 KSLKHIEINGDNLHDYLGV 91 (94)
T ss_dssp TTCCCEEECTTTTHHHHCS
T ss_pred CCCCCeeeCHHHHHHHcCC
Confidence 1378999999888764
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.09 E-value=0.004 Score=60.79 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=22.9
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
-+++.|+|||||||+++.|++.++..
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~~ 28 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 47889999999999999999999543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.88 E-value=0.018 Score=56.39 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
--+-+.||+||||||+|+.|++.++..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~~ 49 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLREQ 49 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 356699999999999999999988543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.57 E-value=0.028 Score=54.84 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
--+-+.||+||||||+|+.|++.++.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 45668999999999999999998753
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.52 E-value=0.015 Score=59.55 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=27.1
Q ss_pred cCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 216 ITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 216 ~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
.+|..++|+||||+||||.+--||..+ +....-+.+-.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt 49 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 49 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecc
Confidence 356889999999999999877777666 44444444433
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.43 E-value=0.015 Score=59.36 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=23.2
Q ss_pred cCCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 216 ITPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 216 ~~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
..|..++|+||||+||||.+--||..+ +....-+.+-.
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 50 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 50 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence 346889999999999999877777666 44444444433
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.38 E-value=0.019 Score=58.67 Aligned_cols=38 Identities=32% Similarity=0.510 Sum_probs=26.5
Q ss_pred CCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 815 ~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
.|..++|+||||+||||.+-.||..+ +.....+.+-.|
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~ 50 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 50 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence 46788999999999999776677665 444444444333
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.35 E-value=0.011 Score=59.04 Aligned_cols=26 Identities=27% Similarity=0.681 Sum_probs=23.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 221 ILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 221 ~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
++|.||||||||++++.|++.++..|
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~ 28 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIF 28 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCce
Confidence 78999999999999999999986554
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.01 Score=59.03 Aligned_cols=27 Identities=30% Similarity=0.604 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
-++|+||||||||+|++.|++.....|
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCcce
Confidence 378999999999999999999985443
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.34 E-value=0.021 Score=58.06 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
+..++|+||||+||||.+-.||..+ +....-+++-.|
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~ 49 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 49 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence 4568899999999999888888777 555555555443
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.011 Score=58.61 Aligned_cols=26 Identities=31% Similarity=0.639 Sum_probs=23.4
Q ss_pred EEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
++|+||||+|||+|++.|++.....|
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcce
Confidence 89999999999999999999986544
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.24 E-value=0.014 Score=58.30 Aligned_cols=26 Identities=27% Similarity=0.681 Sum_probs=23.4
Q ss_pred EEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
++|+||||||||++++.|++.++.-|
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~ 28 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIF 28 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCce
Confidence 78999999999999999999987554
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.14 E-value=0.022 Score=57.91 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=26.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
++.++|+||||+||||.+-.||..+ +.....+.+-.|
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~ 45 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 45 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccc
Confidence 5789999999999999877777766 444444444443
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.11 E-value=0.022 Score=58.12 Aligned_cols=37 Identities=27% Similarity=0.353 Sum_probs=22.3
Q ss_pred CCceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 815 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 815 ~~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
.|..++|+||||+||||.+-.||..+ +...-.+.+-.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 50 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 50 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence 36788999999999999876677665 44444444433
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.05 E-value=0.031 Score=56.85 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=27.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
+..++|+||||+||||.+-.||..+ +.....+.+..|
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~ 49 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 49 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence 4567889999999999887777766 555555555444
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.03 E-value=0.021 Score=58.12 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 217 TPKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 217 ~~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
++..++|+|||||||||.+--||..+ +....-+.+-.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 35789999999999999877778776 44444444433
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.88 E-value=0.014 Score=57.50 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-++|.||||+||||+++.|.+.+.
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998874
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.77 E-value=0.014 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=22.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+-|+|.||||+||||+++.|.+.+.
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998875
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.59 E-value=0.026 Score=57.54 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
|..++|+||||+||||.+--||..+ +....-+.+-.|
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~ 48 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 48 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence 5789999999999999877778766 455455555443
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.43 E-value=0.032 Score=56.91 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=26.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
|..++|+||||+||||.+-.||..+ +.....+.+..|
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~ 48 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 48 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence 5778899999999999777777666 444455555443
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.35 E-value=0.043 Score=55.48 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-++|+||+|+|||+|.+.|.+...
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999999875
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.018 Score=57.89 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
|--+-+.||+||||||+|+.|++.++.+
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~~~ 29 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLGQN 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 3467799999999999999999999643
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.024 Score=56.96 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=24.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
|--+-+.||+||||||+|+.|++.++.+
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~l~~~ 29 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQLLGQN 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4567789999999999999999998643
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.71 E-value=0.063 Score=56.59 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=36.9
Q ss_pred cccchHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 782 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 782 ~IvGQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.++|.+.-++.|...+... .+. ....+.++|+.|+|||+||+.+.+..
T Consensus 21 ~~~gR~~~~~~i~~~L~~~------~~~-----~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 21 TCYIREYHVDRVIKKLDEM------CDL-----DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp CSCCCHHHHHHHHHHHHHH------TTS-----SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceeCcHHHHHHHHHHHHhc------cCC-----CceEEEEECCCCCCHHHHHHHHHHhh
Confidence 5779888888888887642 010 13567899999999999999998874
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.68 E-value=0.052 Score=57.26 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=37.0
Q ss_pred cEecchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 184 YVIGQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 184 ~IiGQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.++|.+.-++.|...+... .+ . ....+.++|+.|+|||+||+.+.+..
T Consensus 21 ~~~gR~~~~~~i~~~L~~~------~~--~---~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 21 TCYIREYHVDRVIKKLDEM------CD--L---DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp CSCCCHHHHHHHHHHHHHH------TT--S---SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceeCcHHHHHHHHHHHHhc------cC--C---CceEEEEECCCCCCHHHHHHHHHHhh
Confidence 6779888888888887542 01 0 12578899999999999999998774
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.60 E-value=0.042 Score=55.86 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~ 251 (1165)
....+++||||||||++|..+|... +.+...++.
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~ 62 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENACANKERAILFAY 62 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence 3689999999999999999999876 444555544
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.29 E-value=0.043 Score=59.44 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 189 NRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 189 ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+.+...+..++..+ .+++++||||+||||+.++|.....
T Consensus 153 ~~~~~~l~~~v~~~----------------~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 153 EQAISAIKDGIAIG----------------KNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHHHHHHHT----------------CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHHhC----------------CCEEEEeeccccchHHHHHHhhhcc
Confidence 45555666666543 7899999999999999999998884
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.97 E-value=0.066 Score=54.36 Aligned_cols=34 Identities=29% Similarity=0.353 Sum_probs=26.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEec
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 849 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~ 849 (1165)
...++++||||||||++|..+|... +.+...++.
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~ 62 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENACANKERAILFAY 62 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence 3678999999999999999888776 444444443
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.88 E-value=0.047 Score=53.85 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
+-++|+||+|+|||+|.+.|.+.....|
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 31 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRF 31 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCe
Confidence 5689999999999999999998875444
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.056 Score=53.24 Aligned_cols=28 Identities=29% Similarity=0.591 Sum_probs=23.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPF 844 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~f 844 (1165)
+-++|+||+|+|||+|++.|.+.....|
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 31 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRF 31 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCe
Confidence 4589999999999999999998875444
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.045 Score=53.40 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||||+|||++|-.+|...
T Consensus 24 ~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 24 SITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998776
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=91.70 E-value=0.042 Score=51.55 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCchHHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
.++++|+||||||+|.+.+...
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.70 E-value=0.045 Score=52.66 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
-+-++|++|||||||+..|+..|
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 46699999999999999999988
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.52 E-value=0.056 Score=58.55 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=23.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
+++++.||+|+||||+.+++.....
T Consensus 167 ~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 167 KNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEeeccccchHHHHHHhhhcc
Confidence 7899999999999999999998874
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.33 E-value=0.05 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
+.++|+|+||||||+|...+...
T Consensus 1 ~KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 1 GKLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988763
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=0.17 Score=54.20 Aligned_cols=37 Identities=32% Similarity=0.391 Sum_probs=29.6
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcC-----CCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSN-----APFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~-----~~fi~l~~se~ 852 (1165)
|--+.+.||+|+||||+|+.|+..+. .....+.+-.|
T Consensus 80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F 121 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence 56788899999999999999999984 33456666655
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.01 E-value=0.058 Score=51.88 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=20.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHc
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.+-++|++|+|||||+..|++.+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L 25 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAA 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999887
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.99 E-value=0.057 Score=53.11 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=23.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
|--+-++|++||||||+|+.+. .+|.+.+
T Consensus 3 p~IIgitG~~gSGKstva~~l~-~~g~~~~ 31 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR-SWGYPVL 31 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HTTCCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCeEE
Confidence 4567789999999999999984 5776544
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=90.92 E-value=0.083 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
.-++|+||+|+|||+|.+.|.+...
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999875
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.88 E-value=0.044 Score=55.18 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
..++++||||||||++|..++..
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999988754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.87 E-value=0.062 Score=52.33 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..++++||||+|||++|-.+|...
T Consensus 24 ~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 24 SITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999999888765
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=90.77 E-value=0.14 Score=51.50 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=24.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
...++|+|||+||||++|.+|.+.++-
T Consensus 53 kn~i~~~GP~~TGKS~f~~sl~~~l~G 79 (205)
T d1tuea_ 53 KNCLVFCGPANTGKSYFGMSFIHFIQG 79 (205)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHhCC
Confidence 368899999999999999999999864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.74 E-value=0.061 Score=50.36 Aligned_cols=22 Identities=41% Similarity=0.510 Sum_probs=19.3
Q ss_pred eEEEEccCCCChhHHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
.++++|+||||||+|.+.+...
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.62 E-value=0.05 Score=54.72 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
..++++||||||||+++-.++..
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999887644
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.59 E-value=0.061 Score=52.89 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
|--+-++|++||||||+|+.|. .+|.+++
T Consensus 3 p~IIgitG~~gSGKstva~~l~-~~g~~~~ 31 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR-SWGYPVL 31 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HTTCCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCeEE
Confidence 4567799999999999999995 4665443
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.26 E-value=0.073 Score=49.66 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.5
Q ss_pred eEEEEccCCCChhHHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
.++|+|+||||||+|...+.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999987763
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.14 E-value=0.07 Score=54.18 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||||||||++|-.+|...
T Consensus 37 ~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 37 AITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHh
Confidence 588999999999999999998765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.88 E-value=0.084 Score=53.40 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||||||||++|..+|...
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998754
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=89.85 E-value=0.079 Score=49.87 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++|+|+||||||+|.+++..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.72 E-value=0.12 Score=55.51 Aligned_cols=37 Identities=32% Similarity=0.391 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhC-----CCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSN-----APFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~-----~~~i~ld~s~~ 254 (1165)
|--+-+.||+||||||+|+.|+..+. .....+.+-.|
T Consensus 80 P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F 121 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence 46888999999999999999999984 33455666655
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.55 E-value=0.088 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.-++++||||||||++|-.++...
T Consensus 37 ~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 37 AITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999888765
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.51 E-value=0.071 Score=51.08 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred CcEEEEEcCCCCCchHHHHHHH
Q psy2392 218 PKNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
...++|+|+||||||+|..++.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~ 34 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLK 34 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999998874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=89.48 E-value=0.049 Score=53.64 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
|--+.+.|+.||||||+++.|++.++.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~~ 35 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKND 35 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999999854
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=89.41 E-value=0.078 Score=53.38 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
...++|+|||+||||++|.+|.+.++.
T Consensus 53 kn~i~~~GP~~TGKS~f~~sl~~~l~G 79 (205)
T d1tuea_ 53 KNCLVFCGPANTGKSYFGMSFIHFIQG 79 (205)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHhCC
Confidence 478999999999999999999999954
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.33 E-value=0.079 Score=54.64 Aligned_cols=36 Identities=25% Similarity=0.540 Sum_probs=27.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCe--EEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPF--IKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~f--i~l~~se~ 852 (1165)
..+.|.||+|||||||.++++......- +.++.-++
T Consensus 27 ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i 64 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRM 64 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEC
Confidence 5788999999999999999998874322 45555443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.26 E-value=0.079 Score=54.57 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=27.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC--ceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~--~i~ld~s~~ 254 (1165)
..+.+.||+|||||||.++++...... -+.++..++
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i 69 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT 69 (230)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEc
Confidence 588999999999999999999877321 245554443
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.25 E-value=0.3 Score=47.15 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP 843 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~ 843 (1165)
..++|.|+=|+|||+++|.+++.++.+
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEecCCCccHHHHHHHHHhhcccc
Confidence 358889999999999999999999763
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.21 E-value=0.07 Score=54.97 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=26.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se~ 852 (1165)
..+.+.||+|||||||.++++...... -+.++.-++
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i 69 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT 69 (230)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEc
Confidence 578899999999999999999877422 255555443
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.16 E-value=0.34 Score=51.21 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=27.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc------CCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS------NAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l------~~~fi~l~~se~ 852 (1165)
|--+-+.||+||||||++..|...+ ......++.-+|
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence 3456678999999999999887665 234556676666
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.11 E-value=0.081 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.728 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.+.||+|||||||.++++..+.
T Consensus 27 ei~~liGpsGsGKSTLl~~i~Gl~~ 51 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMIAGLET 51 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 5789999999999999999999873
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=89.09 E-value=0.084 Score=54.70 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=22.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.+.||+||||||+.++++....
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl~~ 54 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 5788999999999999999998874
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=89.08 E-value=0.082 Score=54.79 Aligned_cols=25 Identities=36% Similarity=0.719 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+-+.||+||||||+.++++..+.
T Consensus 30 e~~~liG~sGaGKSTll~~i~gl~~ 54 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 5889999999999999999998873
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.06 E-value=0.17 Score=55.42 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=17.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
+-.+++||||||||++...+..
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~l~ 185 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKLLA 185 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHHHH
Confidence 5789999999999998755433
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.04 E-value=0.15 Score=50.71 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHH-h---CCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKL-S---NAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~-l---~~~~i~ld~ 251 (1165)
...++++||||+|||++|..++.. + +.....++.
T Consensus 26 G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~ 63 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 63 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccc
Confidence 368999999999999999776543 2 344444444
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.02 E-value=0.099 Score=52.85 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=21.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
..++++||||||||++|..++...
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999988654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.12 Score=51.97 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh---CCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLS---NAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~l 249 (1165)
=+.|.||.|+||||+++.|++.+ |.+.+.+
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~ 37 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 37 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 46677999999999999999988 4454444
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.98 E-value=0.086 Score=54.58 Aligned_cols=35 Identities=20% Similarity=0.479 Sum_probs=26.1
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCCc
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 852 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se~ 852 (1165)
.+.|.||+|||||||.++++..+... -+.+++.++
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i 62 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEEC
Confidence 45688999999999999999988422 255555443
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=88.97 E-value=0.13 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHh
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.+++.||+|+|||||.+.|.+.+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 37899999999999999999877
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.96 E-value=0.084 Score=54.66 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.-+.|.||+|||||||.++|+..+
T Consensus 25 e~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCChHHHHHHHHHcCC
Confidence 356688999999999999999988
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=88.73 E-value=0.11 Score=48.84 Aligned_cols=22 Identities=45% Similarity=0.655 Sum_probs=19.2
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.++|+|+||||||+|.+++..
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999998764
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.71 E-value=0.068 Score=52.56 Aligned_cols=27 Identities=33% Similarity=0.524 Sum_probs=24.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
|--|.+-|+.||||||+++.|++.++.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~~ 35 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKND 35 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457888999999999999999999865
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=88.69 E-value=0.096 Score=49.88 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-+++|+|+||||||+|.+.+..
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4799999999999999998753
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=88.54 E-value=0.074 Score=55.55 Aligned_cols=25 Identities=28% Similarity=0.639 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+.++||+|||||||+++|+..+.
T Consensus 42 e~iaivG~sGsGKSTLl~ll~gl~~ 66 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLITRFYD 66 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CEEEEECCCCChHHHHHHHHhcccC
Confidence 6899999999999999999998873
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.36 E-value=0.21 Score=49.24 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=25.5
Q ss_pred EEEEccCCCChhHHHHHHHHHc---CCCeEEEecC
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 850 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~s 850 (1165)
|.+.|+.||||||+++.|++.+ |.+.+.+.-+
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P 37 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP 37 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence 6778999999999999999987 5555555433
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.36 E-value=0.065 Score=53.97 Aligned_cols=24 Identities=25% Similarity=0.566 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.+.||.|||||||.++++..+
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCChHHHHHHHHhccc
Confidence 567899999999999999999887
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.34 E-value=0.18 Score=50.67 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=24.8
Q ss_pred eEEEEccCCCChhHHHHHHHHHc---CCCeEEEe
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 848 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~ 848 (1165)
-|.|.||.|+||||+++.|++.+ +.+.+.+.
T Consensus 5 lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 38 (209)
T d1nn5a_ 5 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 38 (209)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 36667999999999999999987 55555544
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.26 E-value=0.1 Score=53.97 Aligned_cols=35 Identities=29% Similarity=0.494 Sum_probs=26.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCe--EEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPF--IKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~f--i~l~~se 851 (1165)
..+-+.||+|||||||.++++..+...- +.++.-+
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~ 69 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRD 69 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEE
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEccee
Confidence 4788999999999999999999884322 4455433
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.20 E-value=0.19 Score=49.62 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=24.3
Q ss_pred EEEEcCCCCCchHHHHHHHHHh---CCCceEEe
Q psy2392 221 ILMIGPTGVGKTEIARRLAKLS---NAPFIKIE 250 (1165)
Q Consensus 221 ~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld 250 (1165)
+.+.|+.||||||+++.|++.+ |.+.+.+.
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~ 35 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA 35 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 6788999999999999999988 44554443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.16 E-value=0.1 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.710 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+-+.||+|||||||.++++..+.
T Consensus 33 e~~~liGpsGaGKSTLl~~i~Gl~~ 57 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAGLEE 57 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 5789999999999999999999883
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.13 E-value=0.12 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
++|+++|+||||||+|..++...
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999888763
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=88.06 E-value=0.084 Score=54.69 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+-+.||+|||||||.++++....
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNLLER 56 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHcCCcc
Confidence 5789999999999999999998773
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.05 E-value=0.16 Score=53.93 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~~ 254 (1165)
.-+-++|++|+||||++++|++.+ +.....+.+-+|
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 478999999999999999999988 455556766665
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.00 E-value=0.13 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++|+|+||||||+|...+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.98 E-value=0.12 Score=51.13 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
+++++.|+||||||+|.+++..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999998875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=87.97 E-value=0.093 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+-+.||+|||||||.++++....
T Consensus 32 e~~~iiG~sGsGKSTLl~~i~Gl~~ 56 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRCVNLLER 56 (240)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHcCCcc
Confidence 5678899999999999999998774
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=87.93 E-value=0.17 Score=48.87 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP 245 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~ 245 (1165)
..++|.|+=|+|||+++|.+++.+|..
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred eEEEEecCCCccHHHHHHHHHhhcccc
Confidence 468899999999999999999999753
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.93 E-value=0.074 Score=53.50 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=22.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.+.||.|||||||.++++..+.
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~gl~~ 52 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTISTYLK 52 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcccc
Confidence 4677999999999999999998773
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.13 Score=49.63 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++++|+||||||+|...+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 689999999999999998764
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=87.88 E-value=0.092 Score=54.80 Aligned_cols=35 Identities=23% Similarity=0.516 Sum_probs=26.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se 851 (1165)
..+.++||+|||||||+++|+..+... -+.++.-+
T Consensus 42 e~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 78 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHD 78 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEE
T ss_pred CEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcc
Confidence 578999999999999999999887432 24555443
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=87.84 E-value=0.082 Score=54.38 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se~ 852 (1165)
..+.+.||+||||||+.++++...... -+.+++.++
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i 64 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV 64 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEec
Confidence 468899999999999999999987433 244544443
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=87.82 E-value=0.13 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++|.|++|||||+|..++..
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 3789999999999999998865
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=87.72 E-value=0.12 Score=49.25 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.1
Q ss_pred CceEEEEccCCCChhHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLA 837 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA 837 (1165)
...++|+|+||||||+|..++.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~ 34 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLK 34 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 3679999999999999987764
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=87.72 E-value=0.12 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.+++++|.||||||+|..++..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 6899999999999999998764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.70 E-value=0.13 Score=50.55 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
..++|+|+||||||+|..+|...
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=87.67 E-value=0.088 Score=54.57 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCC--ceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~--~i~ld~s~~ 254 (1165)
...+.++||+|+|||||+++|+..+... -+.++..++
T Consensus 29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 67 (241)
T d2pmka1 29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 67 (241)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEe
Confidence 3689999999999999999999987422 255554443
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.57 E-value=0.25 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.1
Q ss_pred CceEEEEccCCCChhHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
...++++||||+|||++|..++.
T Consensus 26 G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36789999999999999976553
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=87.55 E-value=0.082 Score=54.39 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
.-+.+.||+||||||+.++|+..+.
T Consensus 27 e~~~liGpsGaGKSTll~~l~Gl~~ 51 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCcC
Confidence 5789999999999999999999873
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.46 E-value=0.14 Score=49.39 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|.+|||||+|.+.+..
T Consensus 7 ~Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 7 HKLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 5899999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.45 E-value=0.13 Score=51.43 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.=+.|.|+.||||||+++.|++.+
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788999999999999999988
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.093 Score=54.70 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC--ceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~--~i~ld~s~~ 254 (1165)
..+.++||+|||||||+++|+..+... -+.+|..++
T Consensus 41 e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 41 EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEec
Confidence 588999999999999999999888422 245555443
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=87.38 E-value=0.092 Score=54.43 Aligned_cols=24 Identities=33% Similarity=0.517 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.++||+|||||||+++|+..+
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 578899999999999999999988
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.32 E-value=0.15 Score=50.23 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
+.++|+|+||||||+|..++.+.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999998765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=87.27 E-value=0.14 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=18.9
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.+++.|+||||||+|.+.+..
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999988743
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.24 E-value=0.25 Score=52.27 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh------CCCceEEecccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS------NAPFIKIEATKF 254 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l------~~~~i~ld~s~~ 254 (1165)
|--+-+.||+||||||++..|...+ ......+++-+|
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence 3466689999999999999887776 234555666665
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=87.22 E-value=0.15 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEccCCCChhHHHHHHHHHc
Q psy2392 819 ILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 819 iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+++.||+|+|||||.+.+.+.+
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHH
Confidence 6889999999999999998776
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.21 E-value=0.11 Score=55.11 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
..+.++||+|||||||.++|+..+.
T Consensus 63 e~vaivG~nGsGKSTLl~~i~Gl~~ 87 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILGELE 87 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCc
Confidence 6788999999999999999998873
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=87.15 E-value=0.12 Score=51.66 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
-+-++|++||||||+|+.+. .+|.+++..
T Consensus 4 iIgITG~igSGKStv~~~l~-~~G~~vida 32 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT-DLGVPLVDA 32 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH-TTTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEEc
Confidence 35689999999999999886 467665543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=87.10 E-value=0.15 Score=51.00 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.-++++||||+|||++|..+|..+
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999776
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=86.98 E-value=0.16 Score=48.62 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCCchHHHHHH
Q psy2392 218 PKNILMIGPTGVGKTEIARRL 238 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~l 238 (1165)
.-.++++|+||||||+|.+.+
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l 36 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQL 36 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
Confidence 368999999999999999876
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.92 E-value=0.16 Score=48.76 Aligned_cols=23 Identities=43% Similarity=0.518 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
-.++++|++|||||+|.+.+...
T Consensus 6 ~Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 6 FKILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHcC
Confidence 36899999999999999988753
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.85 E-value=0.22 Score=50.36 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.0
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
|+-+.+-|+-||||||+++.|++.++...+
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 577899999999999999999999975443
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.82 E-value=0.16 Score=48.47 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
-.++++|++|||||+|...+...
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 47899999999999999988653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.80 E-value=0.15 Score=49.59 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.+++.|+||||||+|++.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 689999999999999987753
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=86.80 E-value=0.28 Score=50.35 Aligned_cols=42 Identities=36% Similarity=0.393 Sum_probs=32.5
Q ss_pred cchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 187 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 187 GQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.|..+.+.+...+... .+...||+|.+|+|||.++-..+...
T Consensus 59 ~Q~~~~~~i~~~~~~~--------------~~~~~LL~GdvGsGKT~V~~~a~~~~ 100 (233)
T d2eyqa3 59 DQAQAINAVLSDMCQP--------------LAMDRLVCGDVGFGKTEVAMRAAFLA 100 (233)
T ss_dssp HHHHHHHHHHHHHHSS--------------SCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcc--------------CccCeEEEcCCCCCcHHHHHHHHHHH
Confidence 4777787777777643 35799999999999999997666544
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.72 E-value=0.14 Score=49.26 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++|+|+||+|||+|..+|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=86.68 E-value=0.11 Score=53.75 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=26.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se 851 (1165)
..+.++||+|||||||+++++..+... -+.++..+
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 65 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEE
Confidence 577899999999999999999887422 25555443
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.67 E-value=0.17 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.761 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|+||||||+|.+.+..
T Consensus 5 ~Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 5 FKVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998765
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=86.64 E-value=0.16 Score=50.69 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
+-|.|-|+.||||||+++.|++.+
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 347788999999999999999987
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=86.62 E-value=0.13 Score=51.31 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=22.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEE
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIK 846 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~ 846 (1165)
-+-++|++||||||+|+.+. .+|.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~-~~G~~vid 31 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT-DLGVPLVD 31 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH-TTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEE
Confidence 35689999999999999886 57876553
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.62 E-value=0.17 Score=48.15 Aligned_cols=21 Identities=29% Similarity=0.657 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++|+|+||||||+|...+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.56 E-value=0.12 Score=53.92 Aligned_cols=36 Identities=22% Similarity=0.470 Sum_probs=27.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se~ 852 (1165)
..+.++||+|||||||+++++..+... -+.+|.-++
T Consensus 41 e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 41 EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred CEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEec
Confidence 578899999999999999999888532 255555443
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.55 E-value=0.13 Score=54.39 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.++||+|||||||.++++..+.
T Consensus 63 e~vaivG~nGsGKSTLl~~i~Gl~~ 87 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILGELE 87 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCc
Confidence 5788999999999999999998874
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=86.50 E-value=0.19 Score=49.43 Aligned_cols=36 Identities=28% Similarity=0.414 Sum_probs=27.4
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se~ 852 (1165)
..++||.||||+|||++|-.+... |..|+.=|...+
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~i 49 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQR-GHRLIADDRVDV 49 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEEE
Confidence 378999999999999999887764 666665444433
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.41 E-value=0.18 Score=48.02 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.8
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++|.|++|||||+|...+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 588999999999999998865
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=86.33 E-value=0.17 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.5
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
..++++|.||||||+|..++..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999988754
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.31 E-value=0.095 Score=54.33 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+.+.||+||||||+.++++....
T Consensus 32 e~~~iiG~sGsGKSTll~~i~gl~~ 56 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCcC
Confidence 5788999999999999999999873
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=86.30 E-value=0.12 Score=53.53 Aligned_cols=37 Identities=16% Similarity=0.368 Sum_probs=28.2
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se~ 852 (1165)
...+.++||+|+|||||+++++..+... -+.+|+-++
T Consensus 29 Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 67 (241)
T d2pmka1 29 GEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDL 67 (241)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEe
Confidence 3678899999999999999999987532 255555443
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.27 E-value=0.17 Score=48.72 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=19.0
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++|+|+||+|||+|..+|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999998864
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.17 E-value=0.19 Score=48.42 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++++|+||||||+|...+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999987654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.12 E-value=0.18 Score=48.28 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++++|++|||||+|.+.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.04 E-value=0.17 Score=48.47 Aligned_cols=22 Identities=45% Similarity=0.789 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|++|||||+|.+.+..
T Consensus 6 ~Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 6 FKIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=86.00 E-value=0.2 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.2
Q ss_pred CceEEEEccCCCChhHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.+.++|+|+||+|||||.++|.+
T Consensus 23 ~~~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 23 LPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHhcC
Confidence 35799999999999999999863
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.97 E-value=0.19 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|.||||||+|.+++..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 5 FKYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998875
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.96 E-value=0.19 Score=48.21 Aligned_cols=21 Identities=33% Similarity=0.797 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++++|+||||||+|.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 689999999999999998764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=0.2 Score=50.60 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHhCCCc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLSNAPF 246 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l~~~~ 246 (1165)
|.-+.|-|+-||||||+++.|++.++...
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~ 30 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWH 30 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence 46789999999999999999999996543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.87 E-value=0.15 Score=51.02 Aligned_cols=32 Identities=25% Similarity=0.305 Sum_probs=24.0
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
-+-++|++||||||+|+.+. .+|. ..+|+..+
T Consensus 5 iIgitG~igSGKStv~~~l~-~~G~--~vidaD~i 36 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA-DLGI--NVIDADII 36 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH-HTTC--EEEEHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH-HCCC--cEEEchHH
Confidence 46689999999999999886 5664 45555443
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.85 E-value=0.094 Score=54.37 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+.+.||+||||||+.++++...
T Consensus 32 e~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 588999999999999999999987
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=85.80 E-value=0.19 Score=48.14 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.+.++|+||+|||+|.++|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998864
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.79 E-value=0.48 Score=47.47 Aligned_cols=32 Identities=28% Similarity=0.209 Sum_probs=26.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
.-|.|-|+-||||||+++.|++.+......+.
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~ 35 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 35 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHTTTSEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhCCEEEE
Confidence 45788999999999999999999977665544
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.63 E-value=0.32 Score=50.83 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=28.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---CCCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~s~ 253 (1165)
.-..|+||||||||++|-.++... +...+.+|...
T Consensus 55 ~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 55 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 678999999999999998888776 56667777644
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.61 E-value=0.24 Score=52.49 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=26.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se~ 852 (1165)
.-+-+.|++|+||||+++++.+.+ +.+...+.+..|
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 468899999999999999999987 455566777665
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=85.59 E-value=0.15 Score=53.38 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..+-++||+|||||||+++|+..+
T Consensus 29 Ei~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 29 DVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCc
Confidence 578999999999999999999876
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=85.47 E-value=0.15 Score=53.21 Aligned_cols=25 Identities=32% Similarity=0.514 Sum_probs=22.1
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSN 841 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~ 841 (1165)
..+-++||+|||||||+++++....
T Consensus 29 Ei~~iiG~sGsGKSTLl~~i~Gl~~ 53 (258)
T d1b0ua_ 29 DVISIIGSSGSGKSTFLRCINFLEK 53 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHHcCcc
Confidence 5788999999999999999998763
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=85.41 E-value=0.2 Score=52.24 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCCchHH-HHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEI-ARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~l-Ak~lA~~l 242 (1165)
+++++.||||||||++ +..++..+
T Consensus 15 ~~~lI~g~aGTGKTt~l~~rv~~ll 39 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVITNKIAHLI 39 (306)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEeeCCccHHHHHHHHHHHHH
Confidence 6799999999999975 45555543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.39 E-value=0.21 Score=47.81 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
-.++++|.+|||||+|...+...
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 36899999999999999988753
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=85.39 E-value=0.2 Score=49.25 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s~~ 254 (1165)
.++||.||||+|||++|-.+.+. |..++.=|...+
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~~i 49 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQR-GHRLIADDRVDV 49 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeEEE
Confidence 78999999999999999887764 666655454443
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.35 E-value=0.2 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|++|||||+|..++..
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999998865
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=85.34 E-value=0.17 Score=50.55 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=23.5
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEecCC
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEATK 851 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~se 851 (1165)
-+-++|++||||||+|+.+. .+|.+ .+|+..
T Consensus 5 iIgitG~igSGKStv~~~l~-~~G~~--vidaD~ 35 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA-DLGIN--VIDADI 35 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH-HTTCE--EEEHHH
T ss_pred EEEEECCCcCCHHHHHHHHH-HCCCc--EEEchH
Confidence 46689999999999999886 66754 445533
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=85.34 E-value=0.2 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
..+.|+|+||+|||||.++|.+
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHhcC
Confidence 5799999999999999999973
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=85.30 E-value=0.38 Score=52.50 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=16.9
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLA 837 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA 837 (1165)
+-.++.||||||||++...+.
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~l 184 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKLL 184 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHHH
Confidence 568889999999999875443
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=85.22 E-value=0.23 Score=49.57 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.-++++||||+|||+++-.+|-..
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577889999999999999998765
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.19 E-value=0.22 Score=47.64 Aligned_cols=22 Identities=45% Similarity=0.591 Sum_probs=19.3
Q ss_pred eEEEEccCCCChhHHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
.++++|++|||||+|...+...
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 5899999999999999987653
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=85.09 E-value=0.2 Score=52.82 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCCchHHH-HHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIA-RRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lA-k~lA~~l 242 (1165)
+++++.||||||||+++ ..++..+
T Consensus 25 g~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCccHHHHHHHHHHHHH
Confidence 67999999999999754 5556555
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.03 E-value=0.23 Score=47.86 Aligned_cols=21 Identities=33% Similarity=0.849 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.+++.|++|||||+|.+.+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988754
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=85.02 E-value=0.22 Score=47.64 Aligned_cols=21 Identities=33% Similarity=0.711 Sum_probs=18.8
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.+.++|+||+|||+|.++|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999998864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.02 E-value=0.25 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.623 Sum_probs=19.4
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.++++|.+|||||+|.+.+..
T Consensus 7 ~Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 7 HKLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 4799999999999999987764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.02 E-value=0.2 Score=48.64 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.3
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.+++.|+||||||+|++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999987753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=84.97 E-value=0.35 Score=52.05 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=27.3
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---C--CCeEEEecCCc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---N--APFIKIEATKF 852 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~--~~fi~l~~se~ 852 (1165)
...+-+.||||+|||||...++..+ + ...+.+|.+.-
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~ 95 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSP 95 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCcee
Confidence 3678899999999999999998776 2 23466666543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.96 E-value=0.21 Score=47.51 Aligned_cols=22 Identities=41% Similarity=0.681 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
.+++.|+||||||+|.+++...
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.95 E-value=0.22 Score=47.45 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++|+|.+|||||+|.+.+..
T Consensus 4 fKivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 4 FKVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.92 E-value=0.23 Score=47.09 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.+++.|++|||||+|.+.+..
T Consensus 3 ~Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 3 FKIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998864
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.88 E-value=0.23 Score=47.23 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.++++|++|||||+|...+..
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999988765
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=84.78 E-value=0.4 Score=49.99 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=28.0
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEATK 851 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~se 851 (1165)
.-..|+||||||||++|-.++... +...+.+|...
T Consensus 55 ~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 55 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 578999999999999998887766 45567777654
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.66 E-value=0.22 Score=54.93 Aligned_cols=34 Identities=29% Similarity=0.594 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CCCceEEec
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEA 251 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~~~i~ld~ 251 (1165)
..|++++|+||+|||++.+.+...+ +.+++.+|.
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3799999999999999987666544 667777775
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=84.61 E-value=0.19 Score=49.57 Aligned_cols=33 Identities=33% Similarity=0.515 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEecc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIEAT 252 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~s 252 (1165)
.++||.||+|+|||++|-.+.+. |..++.=|..
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v 48 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINK-NHLFVGDDAI 48 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeE
Confidence 68999999999999999877653 5555443433
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.61 E-value=0.22 Score=47.74 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.+++.|.||||||+|.+.+..
T Consensus 6 ~KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 6 FKFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.60 E-value=0.22 Score=47.67 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++|+|.||||||+|.+.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998865
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=84.54 E-value=0.22 Score=46.89 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++|+|+||+|||+|.++|..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999998864
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.41 E-value=0.23 Score=47.38 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++++|.+|||||+|...+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987754
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=84.32 E-value=0.22 Score=49.07 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=24.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
..++||.||+|+|||++|-.+... |..++.=|
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD 46 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINK-NHLFVGDD 46 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTT-TCEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCceecCC
Confidence 378999999999999999877653 55555433
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=84.31 E-value=0.49 Score=50.88 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCCchHHHHHHHHHh---CC--CceEEeccc
Q psy2392 218 PKNILMIGPTGVGKTEIARRLAKLS---NA--PFIKIEATK 253 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA~~l---~~--~~i~ld~s~ 253 (1165)
...+-++||||+|||||..+|+..+ |. ..+.+|.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss 94 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 94 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce
Confidence 3679999999999999999999877 32 346666654
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.24 E-value=0.25 Score=47.18 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=19.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|++|||||+|.+.+..
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.19 E-value=0.26 Score=47.19 Aligned_cols=21 Identities=48% Similarity=0.879 Sum_probs=19.0
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++|+|++|||||+|.+.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.16 E-value=0.25 Score=47.86 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++++|.||||||+|...+..
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998865
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.14 E-value=0.24 Score=47.14 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
..+++.|++|||||+|.+.+..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5799999999999999998864
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=84.12 E-value=0.3 Score=46.62 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=18.4
Q ss_pred CceEEEEccCCCChhHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRL 836 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~l 836 (1165)
.-.++++|+||||||+|.+.+
T Consensus 16 ~~kI~vvG~~~vGKSsLi~~l 36 (176)
T d1fzqa_ 16 EVRILLLGLDNAGKTTLLKQL 36 (176)
T ss_dssp CEEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHH
Confidence 357999999999999998766
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.10 E-value=0.26 Score=47.09 Aligned_cols=21 Identities=33% Similarity=0.797 Sum_probs=18.5
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++++|+||||||+|...+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999988764
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.01 E-value=0.3 Score=53.79 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=27.1
Q ss_pred CceEEEEccCCCChhHHHHHHHHHc---CCCeEEEecC
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLS---NAPFIKIEAT 850 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l---~~~fi~l~~s 850 (1165)
..|++++|+||+|||++.+.+...+ +.+++.+|..
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k 87 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 87 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4799999999999999887655443 6667777753
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.87 E-value=0.27 Score=46.96 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++++|++|||||+|.+.+..
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999988765
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.86 E-value=0.27 Score=47.22 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|+||||||+|...+..
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988865
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.76 E-value=0.25 Score=47.58 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
..++++|++|||||+|...+...
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47899999999999999887653
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=83.76 E-value=0.4 Score=53.01 Aligned_cols=26 Identities=35% Similarity=0.390 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
+-+|+.||+|+||||+..++-..++.
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred ceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 78999999999999999999988843
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=83.75 E-value=0.45 Score=52.58 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=29.5
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCC---CeEEE-ecCCccccc
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNA---PFIKI-EATKFTEVG 856 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~---~fi~l-~~se~~~~G 856 (1165)
.+-+|+.||+|+||||+..++-+.++. +++.+ |..++.-+|
T Consensus 158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~ 202 (401)
T d1p9ra_ 158 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDG 202 (401)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSS
T ss_pred hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCC
Confidence 377899999999999999999888743 34333 455554443
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=83.73 E-value=0.11 Score=54.13 Aligned_cols=36 Identities=17% Similarity=0.417 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC--ceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~--~i~ld~s~~ 254 (1165)
..+.++||+|||||||++.|+..+... -+.++..++
T Consensus 45 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 82 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 82 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred CEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc
Confidence 689999999999999999999877422 255554443
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.71 E-value=0.26 Score=46.69 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.+++.|.+|||||+|.+.+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.70 E-value=0.41 Score=48.01 Aligned_cols=31 Identities=29% Similarity=0.203 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEE
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKI 249 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~l 249 (1165)
.=+.|-|+-||||||+++.|++.+......+
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~~L~~~~~~~ 34 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYKKLQPNCKLL 34 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHTTTSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhCCEEE
Confidence 5678999999999999999999997655443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.67 E-value=0.33 Score=50.75 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=32.6
Q ss_pred cchhhHHHHHHHHHhhhhhhcccCCCCCccCCcEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 187 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 187 GQ~~a~~~l~~ai~~~~~r~~l~~~~~~~~~~~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.|..|+..|...+... .+.+.||.|.+|||||.+|-..+...
T Consensus 87 ~Q~~ai~ei~~d~~~~--------------~~m~rLL~GdvGSGKT~Va~~a~~~~ 128 (264)
T d1gm5a3 87 AQKRAHQEIRNDMISE--------------KPMNRLLQGDVGSGKTVVAQLAILDN 128 (264)
T ss_dssp HHHHHHHHHHHHHHSS--------------SCCCCEEECCSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhcc--------------CcceeeeeccccccccHHHHHHHHHH
Confidence 4777888877776543 35789999999999999997766554
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.66 E-value=0.28 Score=46.66 Aligned_cols=21 Identities=29% Similarity=0.705 Sum_probs=18.8
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++++|++|||||+|...+..
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=83.59 E-value=0.17 Score=48.38 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCchHHHHHHH
Q psy2392 218 PKNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 218 ~~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
...+.|+|+|++|||+|.++|.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~ 37 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLT 37 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999998874
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.53 E-value=0.31 Score=44.80 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCceEEe
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 250 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld 250 (1165)
...++.+|||+|||+++-.+....+...+.+-
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~ 40 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLN 40 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 67899999999999988665555555544443
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.53 E-value=0.28 Score=46.69 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|.+|||||+|.+.+..
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999998865
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=83.51 E-value=0.27 Score=46.13 Aligned_cols=21 Identities=24% Similarity=0.506 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++|+|+||+|||+|.+++..
T Consensus 3 kI~lvG~~nvGKSsLin~l~~ 23 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAG 23 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999988763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.43 E-value=0.27 Score=47.00 Aligned_cols=21 Identities=38% Similarity=0.805 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++++|++|||||+|.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~ 23 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGG 23 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhC
Confidence 588999999999999987753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.39 E-value=0.3 Score=46.48 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.+++.|.||||||+|.+.+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.38 E-value=0.29 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
-.++++|.+|||||+|.+.+...
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999988653
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.36 E-value=0.27 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=17.4
Q ss_pred ceEEEEccCCCChhHHH-HHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIA-RRLAKL 839 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lA-k~lA~~ 839 (1165)
+++|+.||||||||+++ ..++..
T Consensus 15 ~~~lI~g~aGTGKTt~l~~rv~~l 38 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVITNKIAHL 38 (306)
T ss_dssp SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeeCCccHHHHHHHHHHHH
Confidence 66899999999999753 444444
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=83.29 E-value=0.28 Score=46.99 Aligned_cols=22 Identities=27% Similarity=0.664 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
..++++|.+|||||+|.+.+..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 6899999999999999998864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.26 E-value=0.12 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSN 243 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~ 243 (1165)
+-+.+-||-||||||+++.|++.+.
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5688999999999999999999984
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=83.13 E-value=0.2 Score=47.81 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.6
Q ss_pred CceEEEEccCCCChhHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLA 837 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA 837 (1165)
...+.|+|+|++|||+|.++|.
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~ 37 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLT 37 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999998774
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.11 E-value=0.77 Score=46.89 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
..++++||..+|||++.|++|-..
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHHHHH
Confidence 578999999999999999998654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=83.07 E-value=0.4 Score=49.44 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh----CCCceEEec
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEA 251 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l----~~~~i~ld~ 251 (1165)
.-+++.|+||+|||+++..+|..+ +.+...++.
T Consensus 36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 478999999999999998888543 555555544
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=83.05 E-value=0.31 Score=50.13 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS 242 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l 242 (1165)
.-.+|+|+||+|||+++-.+|..+
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577899999999999999998765
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.01 E-value=0.29 Score=46.89 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++|.|.||||||+|.+.+..
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999988764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.94 E-value=0.31 Score=46.96 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|++|||||+|.+.+..
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4799999999999999998875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.89 E-value=0.31 Score=46.23 Aligned_cols=21 Identities=43% Similarity=0.776 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.+++.|+||||||+|.+.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998765
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.87 E-value=0.29 Score=47.00 Aligned_cols=21 Identities=38% Similarity=0.725 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++|.|++|||||+|.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988763
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.87 E-value=0.29 Score=46.75 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=18.8
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++|+|.||||||+|.+.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=82.80 E-value=0.3 Score=51.34 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.0
Q ss_pred ceEEEEccCCCChhHHH-HHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIA-RRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lA-k~lA~~l 840 (1165)
+.+++.||||||||+++ ..++..+
T Consensus 25 g~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCccHHHHHHHHHHHHH
Confidence 56899999999999754 4455544
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=82.76 E-value=0.24 Score=51.12 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=27.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se~ 852 (1165)
..+.|.||.|+|||||.++++..+... -+.+++.++
T Consensus 33 ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccc
Confidence 567889999999999999999887432 255555443
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.76 E-value=0.33 Score=45.93 Aligned_cols=21 Identities=38% Similarity=0.668 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.+++.|++|||||+|.+.+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.69 E-value=0.33 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=19.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
-.++++|.+|||||+|...+.+.
T Consensus 7 ~Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 46899999999999999887753
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=82.59 E-value=0.24 Score=51.13 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC--ceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~--~i~ld~s~~ 254 (1165)
.-+-|.||.|+|||||.++++..+... -+.++..++
T Consensus 33 ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDI 70 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccc
Confidence 578899999999999999999987322 245554443
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.49 E-value=0.33 Score=46.27 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.++++|.+|||||+|...+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=82.48 E-value=0.15 Score=53.31 Aligned_cols=36 Identities=17% Similarity=0.417 Sum_probs=27.5
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se~ 852 (1165)
..+.++||+|||||||++.++..+... -+.++..++
T Consensus 45 e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i 82 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNI 82 (255)
T ss_dssp CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEG
T ss_pred CEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEc
Confidence 578999999999999999998877532 255555443
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.46 E-value=0.33 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
..+++.|++|||||+|.+.+..
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4689999999999999988764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.44 E-value=0.31 Score=47.61 Aligned_cols=28 Identities=32% Similarity=0.568 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCCce
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAPFI 247 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~~i 247 (1165)
..+||.||||+|||++|-.+.+. |..++
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~-g~~li 43 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKR-GHRLV 43 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence 69999999999999999776655 44443
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.44 E-value=0.34 Score=46.12 Aligned_cols=21 Identities=29% Similarity=0.593 Sum_probs=18.6
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++|+|.+|||||+|...+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988764
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.36 E-value=0.16 Score=51.19 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
+-|.+-||-||||||+++.|++.+..
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 56889999999999999999999854
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=82.36 E-value=0.22 Score=47.83 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCCchHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLA 239 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA 239 (1165)
-.++++|+||||||+|.+.+.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~ 33 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLK 33 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.31 E-value=0.29 Score=46.62 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=18.0
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++++|.+|||||+|...+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999887653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.17 E-value=0.35 Score=47.20 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=22.9
Q ss_pred CceEEEEccCCCChhHHHHHHHHHcCCCeE
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAKLSNAPFI 845 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~~l~~~fi 845 (1165)
..++||.||+|+|||++|-.+.+. |..++
T Consensus 15 g~gvli~G~sg~GKS~la~~l~~~-g~~li 43 (169)
T d1ko7a2 15 GVGVLITGDSGIGKSETALELIKR-GHRLV 43 (169)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence 378999999999999999776665 44443
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=82.13 E-value=0.22 Score=48.10 Aligned_cols=20 Identities=50% Similarity=0.740 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCCchHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRL 238 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~l 238 (1165)
-.++++|+||||||+|.+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l 37 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRL 37 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 68999999999999999876
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.09 E-value=0.27 Score=49.81 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCchHHHHHHHHHhCCCceEEec
Q psy2392 220 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 251 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~l~~~~i~ld~ 251 (1165)
-+-|+|+.||||||+|+.|++.+| +..++.
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~g--~~~i~~ 32 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNYS--AVKYQL 32 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSC--EEECCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC--CeEEcc
Confidence 467899999999999999999875 345553
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=81.95 E-value=0.47 Score=43.49 Aligned_cols=32 Identities=16% Similarity=0.198 Sum_probs=23.7
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCCeEEEe
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAPFIKIE 848 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~ 848 (1165)
...++.+|||+|||+++-.+....+...+.+-
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~ 40 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLN 40 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 67899999999999988665555565544443
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.95 E-value=0.32 Score=47.65 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|++|||||+|...+..
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhh
Confidence 3689999999999999998864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.85 E-value=0.36 Score=46.67 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=18.7
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.++++|.||||||+|...+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999988765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.83 E-value=0.35 Score=46.17 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=18.9
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.++++|++|||||+|.+.+.+
T Consensus 7 fKi~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 7 FKVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999887754
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.82 E-value=0.35 Score=50.55 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=23.9
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCC
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNA 842 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~ 842 (1165)
..++|+|||++|||+++.+++..++.
T Consensus 105 n~~~l~G~~~tGKS~f~~~i~~~lg~ 130 (267)
T d1u0ja_ 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 57889999999999999999999965
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=81.80 E-value=0.4 Score=51.52 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHh---C--CCceEEeccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLS---N--APFIKIEATK 253 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l---~--~~~i~ld~s~ 253 (1165)
..+=+.||||+|||||...|+..+ + ...+.+|.+.
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss 91 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 91 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccccc
Confidence 578999999999999999999876 3 3446777665
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.77 E-value=0.34 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
..++|.|.+|||||+|.+.+..
T Consensus 3 ~KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.71 E-value=0.36 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|.+|||||+|.+.+..
T Consensus 6 iKivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3799999999999999998765
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=81.68 E-value=0.34 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=20.6
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.-.+++|+||+|||+++-.+|..+
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la~~i 53 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLAAQI 53 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467889999999999998888764
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.68 E-value=0.41 Score=49.99 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCC
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNA 244 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~ 244 (1165)
..++|+|||++|||+++.+|++.+|.
T Consensus 105 n~~~l~G~~~tGKS~f~~~i~~~lg~ 130 (267)
T d1u0ja_ 105 NTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 68899999999999999999999853
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.62 E-value=0.38 Score=45.49 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.4
Q ss_pred eEEEEccCCCChhHHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
.+++.|.+|||||+|.+.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=81.59 E-value=0.31 Score=49.27 Aligned_cols=30 Identities=23% Similarity=0.242 Sum_probs=24.7
Q ss_pred eEEEEccCCCChhHHHHHHHHHcCCCeEEEec
Q psy2392 818 NILMIGPTGVGKTEIARRLAKLSNAPFIKIEA 849 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA~~l~~~fi~l~~ 849 (1165)
-+-|+|+.||||||+|+.+++.+|. ..++.
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~g~--~~i~~ 32 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNYSA--VKYQL 32 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCE--EECCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC--eEEcc
Confidence 4778999999999999999998864 55553
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.59 E-value=0.37 Score=46.27 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.3
Q ss_pred ceEEEEccCCCChhHHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKL 839 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~ 839 (1165)
..+++.|++|||||+|...+.+.
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 45889999999999999877653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.56 E-value=0.38 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.646 Sum_probs=19.2
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.++++|+||||||+|...+..
T Consensus 7 ~KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 7 FKVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999987765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=81.38 E-value=0.35 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
+.+.|+|.||+|||+|.++|..
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~ 27 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLG 27 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999998864
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.33 E-value=0.37 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCCchHHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
...+|.|+||||||+|..+|...
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~ 118 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPG 118 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCCHHHHHHhhcch
Confidence 57789999999999999988543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.26 E-value=0.19 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCchHHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAKL 241 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~~ 241 (1165)
.+.|+|+||+|||+|.++|...
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=81.20 E-value=0.34 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.8
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
+.++|+|.||+|||+|.+++.+
T Consensus 6 ~~I~lvG~~~~GKSSLin~l~~ 27 (178)
T d1wf3a1 6 GFVAIVGKPNVGKSTLLNNLLG 27 (178)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999998864
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.17 E-value=0.4 Score=45.55 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.2
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.++++|.+|||||+|.+.+.+
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3589999999999999988765
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.13 E-value=0.39 Score=45.91 Aligned_cols=22 Identities=23% Similarity=0.573 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|.+|||||+|.+.+..
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999998875
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=81.00 E-value=0.35 Score=46.11 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.8
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
+.|+|+|.||+|||+|.++|.+
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5688999999999999999864
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.85 E-value=0.36 Score=46.12 Aligned_cols=20 Identities=40% Similarity=0.863 Sum_probs=17.5
Q ss_pred eEEEEccCCCChhHHHHHHH
Q psy2392 818 NILMIGPTGVGKTEIARRLA 837 (1165)
Q Consensus 818 ~iLL~GPpG~GKT~lAk~lA 837 (1165)
.++++|++|||||+|.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~ 22 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFG 22 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 47899999999999988764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.80 E-value=0.3 Score=50.75 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=27.5
Q ss_pred cEEEEEcCCCCCchHHHHHHHHHhCCC--ceEEecccc
Q psy2392 219 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 254 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~~l~~~--~i~ld~s~~ 254 (1165)
..+-|.||.|+|||||.++|+..+... -+.++..++
T Consensus 31 ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 31 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 68 (254)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence 578899999999999999999987422 255555444
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.76 E-value=0.31 Score=50.64 Aligned_cols=36 Identities=25% Similarity=0.449 Sum_probs=27.8
Q ss_pred ceEEEEccCCCChhHHHHHHHHHcCCC--eEEEecCCc
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLSNAP--FIKIEATKF 852 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l~~~--fi~l~~se~ 852 (1165)
..+-|.||.|+|||||.++++..+... -+.++..++
T Consensus 31 ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 31 DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 68 (254)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEC
T ss_pred CEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEec
Confidence 467899999999999999999987433 255555554
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.64 E-value=0.43 Score=45.89 Aligned_cols=22 Identities=41% Similarity=0.750 Sum_probs=19.4
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.++++|++|||||+|.+.+..
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999998765
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=80.61 E-value=0.77 Score=46.92 Aligned_cols=42 Identities=36% Similarity=0.393 Sum_probs=31.4
Q ss_pred chHHHHHHHHHHHHhHhhhhcccCCCCCCCCCceEEEEccCCCChhHHHHHHHHHc
Q psy2392 785 GQNRAKRAVAIALRNRWRRQQITGPLQQEITPKNILMIGPTGVGKTEIARRLAKLS 840 (1165)
Q Consensus 785 GQ~~ak~~l~~~i~~~~~r~~l~~~~~~~~~~~~iLL~GPpG~GKT~lAk~lA~~l 840 (1165)
.|..+.+.+...+... .+...||+|.+|+|||.++-..+...
T Consensus 59 ~Q~~~~~~i~~~~~~~--------------~~~~~LL~GdvGsGKT~V~~~a~~~~ 100 (233)
T d2eyqa3 59 DQAQAINAVLSDMCQP--------------LAMDRLVCGDVGFGKTEVAMRAAFLA 100 (233)
T ss_dssp HHHHHHHHHHHHHHSS--------------SCCEEEEECCCCTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcc--------------CccCeEEEcCCCCCcHHHHHHHHHHH
Confidence 5777777777776532 14788999999999999986655443
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=80.52 E-value=0.42 Score=45.65 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=19.9
Q ss_pred CceEEEEccCCCChhHHHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
...++++|.+|||||+|.+.+..
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHHh
Confidence 35789999999999999988764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.41 E-value=0.4 Score=46.94 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=18.9
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.+++.|++|||||+|...+..
T Consensus 7 ~KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 7 FKLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHhh
Confidence 3588999999999999988764
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.36 E-value=0.38 Score=45.85 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
+.++|.|.||+|||+|.++|.+
T Consensus 6 ~~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 6 GFIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEEECSSSSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5689999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.28 E-value=0.4 Score=46.56 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCchHHHHHHHH
Q psy2392 219 KNILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 219 ~~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
-.++++|.+|||||+|.+.+..
T Consensus 10 ~Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 10 LKCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhh
Confidence 5799999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=80.19 E-value=0.32 Score=46.60 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=18.5
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLA 837 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA 837 (1165)
-.++++|+||||||+|.+.+.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~ 33 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLK 33 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999988764
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=80.13 E-value=0.32 Score=46.94 Aligned_cols=21 Identities=48% Similarity=0.697 Sum_probs=18.4
Q ss_pred CceEEEEccCCCChhHHHHHH
Q psy2392 816 PKNILMIGPTGVGKTEIARRL 836 (1165)
Q Consensus 816 ~~~iLL~GPpG~GKT~lAk~l 836 (1165)
.-.++++|+||||||+|.+.+
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l 37 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRL 37 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHT
T ss_pred eEEEEEECCCCCCHHHHHHHH
Confidence 367999999999999998765
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.13 E-value=0.41 Score=46.69 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCchHHHHHHHH
Q psy2392 220 NILMIGPTGVGKTEIARRLAK 240 (1165)
Q Consensus 220 ~~Ll~GPpG~GKT~lAk~lA~ 240 (1165)
.+++.|++|||||+|...+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=80.10 E-value=0.71 Score=47.44 Aligned_cols=33 Identities=18% Similarity=0.169 Sum_probs=24.4
Q ss_pred ceEEEEccCCCChhHHHHHHHHHc----CCCeEEEec
Q psy2392 817 KNILMIGPTGVGKTEIARRLAKLS----NAPFIKIEA 849 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~~l----~~~fi~l~~ 849 (1165)
.-+++.|+||+|||+++..+|-.+ +.+...++.
T Consensus 36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 467889999999999998887432 556555544
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.08 E-value=0.43 Score=45.73 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=18.3
Q ss_pred ceEEEEccCCCChhHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLA 837 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA 837 (1165)
-.++|.|++|||||+|...+.
T Consensus 4 ~Kv~lvG~~~vGKTsLi~~~~ 24 (172)
T d2g3ya1 4 YRVVLIGEQGVGKSTLANIFA 24 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHH
Confidence 358999999999999988765
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.07 E-value=0.46 Score=45.10 Aligned_cols=22 Identities=23% Similarity=0.628 Sum_probs=19.1
Q ss_pred ceEEEEccCCCChhHHHHHHHH
Q psy2392 817 KNILMIGPTGVGKTEIARRLAK 838 (1165)
Q Consensus 817 ~~iLL~GPpG~GKT~lAk~lA~ 838 (1165)
-.++++|.+|||||+|.+.+..
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4589999999999999988764
|