Psyllid ID: psy2395
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 570 | 2.2.26 [Sep-21-2011] | |||||||
| A6SUF6 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.651 | 1e-122 | |
| B2SZ27 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.609 | 1e-112 | |
| B2JHK8 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.603 | 1e-112 | |
| Q39K18 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.609 | 1e-112 | |
| Q13TU2 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.606 | 1e-111 | |
| B2UDM7 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.587 | 1e-111 | |
| Q8XVD0 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.583 | 1e-111 | |
| Q0BIQ0 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.603 | 1e-111 | |
| B1YSD5 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.603 | 1e-111 | |
| Q46WS9 | 360 | Peptide chain release fac | yes | N/A | 0.543 | 0.861 | 0.583 | 1e-111 |
| >sp|A6SUF6|RF1_JANMA Peptide chain release factor 1 OS=Janthinobacterium sp. (strain Marseille) GN=prfA PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 439 bits (1129), Expect = e-122, Method: Compositional matrix adjust.
Identities = 202/310 (65%), Positives = 251/310 (80%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ML+KL++ ++RL EL+ LL Q++ +N+ +Y K REH+ L P+V LY NY++ +
Sbjct: 1 MKPSMLAKLDQLTERLDELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYRQADS 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI A+ ML+D +M+ FA +EI AK R+ +E++++K++LPKD ND RNIF+EIRAGTG
Sbjct: 61 DIQDAQGMLSDPDMKEFAQEEIAAAKTRMEQLEIDLQKMLLPKDPNDDRNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDE+ALF DLLRMY RF+ERN W+ E++S S SE+GGYKE+I RIIG YSKLKFESG
Sbjct: 121 GDEAALFAGDLLRMYSRFAERNRWQIEMVSESASEVGGYKEVIVRIIGFGAYSKLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVA++PEADE+ED+NINPADLRIDTYRASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAIMPEADEVEDVNINPADLRIDTYRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVRITHIPTGIVV+CQ+DRSQHKNKA ALK+L ARIKD +LREQQS A R+ LIGS
Sbjct: 241 DSAVRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Janthinobacterium sp. (strain Marseille) (taxid: 375286) |
| >sp|B2SZ27|RF1_BURPP Peptide chain release factor 1 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/310 (60%), Positives = 241/310 (77%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK M KL++ + RL EL+ LL+++++ +N+ Y K REH+ L P+V+ Y +++
Sbjct: 1 MKTSMQRKLDQLTTRLAELNDLLSREDITSNLDQYRKLTREHAELGPVVDHYALWRQAMN 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D TA+E+L D MR+FA DEI A++R+ + E++K++LPKD ND RNIF+EIRAGTG
Sbjct: 61 DATTAQELLADASMRDFAEDEIRAARERMEKLGAELQKMLLPKDPNDDRNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY+RF+ERN W+ E++S S S++GGYKE+I RI G YSKLKFESG
Sbjct: 121 GDESALFAGDLLRMYLRFAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADEI ++ INPADLRIDT+RASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVR+TH+PTGIVV+CQ+DRSQHKNK ALK+L ARIKD + EQQ+ A R+ LIGS
Sbjct: 241 DSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Burkholderia phytofirmans (strain DSM 17436 / PsJN) (taxid: 398527) |
| >sp|B2JHK8|RF1_BURP8 Peptide chain release factor 1 OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/310 (60%), Positives = 243/310 (78%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK M +KL++ + RL EL+ LL+++++ +NI Y K REH+ L P+VE Y +++
Sbjct: 1 MKTSMQAKLDQLTTRLAELNDLLSREDITSNIDQYRKLTREHAELQPVVEQYGLWRQTMN 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D TA+E+L+D M++FA +EI +++R+ +E E++K++LPKD ND RNIF+EIRAGTG
Sbjct: 61 DAATAQELLSDASMKDFAEEEIRASRERMETLESELQKMLLPKDPNDDRNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY+R++ERN W+ E++S S S++GGYKE+I RI G YSKLKFESG
Sbjct: 121 GDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADEI ++ INPADLRIDT+RASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVR+TH+PTGIVV+CQ+DRSQHKNK ALK+L ARIKD + EQ + A R+ LIGS
Sbjct: 241 DSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Burkholderia phymatum (strain DSM 17167 / STM815) (taxid: 391038) |
| >sp|Q39K18|RF1_BURS3 Peptide chain release factor 1 OS=Burkholderia sp. (strain 383) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1040), Expect = e-112, Method: Compositional matrix adjust.
Identities = 189/310 (60%), Positives = 238/310 (76%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK M KL++ S RL EL+ LL+++ V ++ Y K REH+ L P+VE Y +++
Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRS 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D A+E+L DL MR+FA DEI A++ + +E E++K++LPKD ND+RNIF+EIRAGTG
Sbjct: 61 DETAAQELLGDLSMRDFAEDEIRSARESMSRLETELQKMLLPKDPNDERNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY+RF+ER W+ E++S S S++GGYKE+I RI G YS+LKFESG
Sbjct: 121 GDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADEI ++ INPADLRIDT+RASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVR+THIPTGIVV+CQ+DRSQHKNK ALK+L ARIKD + EQ + A R+ LIGS
Sbjct: 241 DSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Burkholderia sp. (strain 383) (taxid: 269483) |
| >sp|Q13TU2|RF1_BURXL Peptide chain release factor 1 OS=Burkholderia xenovorans (strain LB400) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust.
Identities = 188/310 (60%), Positives = 241/310 (77%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK M KL++ + RL EL+ LL+++++ +N+ Y K REH+ L P+VE Y +++
Sbjct: 1 MKTSMQRKLDQLTTRLAELNDLLSREDITSNLDQYRKLTREHAELGPVVEHYALWRQAMN 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D TA+E+L D MR+FA +EI A++R+ + E++K++LPKD ND RNIF+EIRAGTG
Sbjct: 61 DAATAQELLADASMRDFAEEEIRAARERMDKLGAELQKMLLPKDPNDDRNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY+R++ERN W+ E++S S S++GGYKE+I RI G YSKLKFESG
Sbjct: 121 GDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADEI ++ INPADLRIDT+RASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVR+TH+PTGIVV+CQ+DRSQHKNK ALK+L ARIKD + EQQ+ A R+ LIGS
Sbjct: 241 DSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Burkholderia xenovorans (strain LB400) (taxid: 266265) |
| >sp|B2UDM7|RF1_RALPJ Peptide chain release factor 1 OS=Ralstonia pickettii (strain 12J) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1036), Expect = e-111, Method: Compositional matrix adjust.
Identities = 182/310 (58%), Positives = 240/310 (77%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK MLSKL++ ++R+ E++ LL +++ N+ Y K REH+ L P+V + +K+ E
Sbjct: 1 MKPSMLSKLDQLAERIVEINALLAREDATANLDQYRKLTREHAELEPVVAQFAAWKQAEE 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI TA+E+ D +M+ FA DE+ A++R+ +E E+++L+LPKD ND RNIF+EIRAGTG
Sbjct: 61 DIATAQELAADPDMKAFAEDELRAARERMESLEGELQRLLLPKDPNDHRNIFVEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY R++ER W+ EI+S S S++GGYKE+IAR++G YS+LKFESG
Sbjct: 121 GDESALFAGDLLRMYTRYAERQRWQVEIVSESPSDLGGYKEVIARLVGEGAYSRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TE QGRIHTSACTVAV+PEAD + DI INPADLRIDT+RASGAGGQHINKT
Sbjct: 181 GHRVQRVPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVRITH+PTG+VV+CQ+DRSQH+NK A+++L AR+KD + RE Q+ A R+ LIGS
Sbjct: 241 DSAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSDRIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Ralstonia pickettii (strain 12J) (taxid: 402626) |
| >sp|Q8XVD0|RF1_RALSO Peptide chain release factor 1 OS=Ralstonia solanacearum (strain GMI1000) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust.
Identities = 181/310 (58%), Positives = 239/310 (77%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK MLSKL++ ++R E++ LL +++ N+ Y K REH+ L P+V Y +K+ +
Sbjct: 1 MKPSMLSKLDQLAERTVEINALLAREDATANLDQYRKLTREHAELEPVVAQYAAWKQAED 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D+ TA+E+L D +M+ FA DEI A++R+ +E E+++L+LPKD ND RNIF+EIRAGTG
Sbjct: 61 DVTTAQELLADPDMKAFAEDEIRAARERMTTLEAELQRLLLPKDPNDHRNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY R++ER W+ EI+S S S++GGYKE+I R++G YS+LKFESG
Sbjct: 121 GDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIVRLVGEGAYSRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TE QGRIHTSACTVAV+PEAD + DI INPADLRIDT+RASGAGGQHINKT
Sbjct: 181 GHRVQRVPATEAQGRIHTSACTVAVMPEADPLADIQINPADLRIDTFRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVR+TH+PTG+VV+CQ+DRSQH+NK A+++L AR+KD + RE Q+ A R+ LIGS
Sbjct: 241 DSAVRLTHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSDRIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
| >sp|Q0BIQ0|RF1_BURCM Peptide chain release factor 1 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/310 (60%), Positives = 236/310 (76%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK M KL++ S RL EL+ LL+++ V ++ Y + REH+ L P+VE Y +++
Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRRLTREHAELGPVVEQYALWRQSRN 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D A+E+L D MR+FA DEI A++R+ +E E++K++LPKD ND RNIF+EIRAG G
Sbjct: 61 DETAAQELLADASMRDFAEDEIRSARERMVRLEAELQKMLLPKDPNDDRNIFLEIRAGAG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY+RF+ER W+ E++S S S++GGYKE+I RI G YS+LKFESG
Sbjct: 121 GDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADEI ++ INPADLRIDT+RASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVR+THIPTGIVV+CQ+DRSQHKNK ALK+L ARIKD + EQ + A R+ LIGS
Sbjct: 241 DSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670) |
| >sp|B1YSD5|RF1_BURA4 Peptide chain release factor 1 OS=Burkholderia ambifaria (strain MC40-6) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 402 bits (1032), Expect = e-111, Method: Compositional matrix adjust.
Identities = 187/310 (60%), Positives = 236/310 (76%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK M KL++ S RL EL+ LL+++ V ++ Y + REH+ L P+VE Y +++
Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRRLTREHAELGPVVEQYALWRQSRN 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D A+E+L D MR+FA DEI A++R+ +E E++K++LPKD ND RNIF+EIRAG G
Sbjct: 61 DETAAQELLADASMRDFAEDEIRSARERMVRLEAELQKMLLPKDPNDDRNIFLEIRAGAG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY+RF+ER W+ E++S S S++GGYKE+I RI G YS+LKFESG
Sbjct: 121 GDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADEI ++ INPADLRIDT+RASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVR+THIPTGIVV+CQ+DRSQHKNK ALK+L ARIKD + EQ + A R+ LIGS
Sbjct: 241 DSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Burkholderia ambifaria (strain MC40-6) (taxid: 398577) |
| >sp|Q46WS9|RF1_CUPPJ Peptide chain release factor 1 OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=prfA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 401 bits (1031), Expect = e-111, Method: Compositional matrix adjust.
Identities = 181/310 (58%), Positives = 240/310 (77%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ML+KL++ ++RL+E++ LL +++ NI Y K REH+ L P+ E Y Y++ +
Sbjct: 1 MKASMLAKLDQLAERLEEVNALLAREDATANIDQYRKLSREHAELSPVAEQYGFYRQAQD 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D+ TA+ +L+D EM++FA DEI A++R+ +E ++KL+LPKD ND RN+ +EIRAGTG
Sbjct: 61 DLATAQALLDDPEMKDFAADEIASARERLESLEGSLQKLLLPKDPNDDRNLILEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
G+ESALF DLLRMY RF+ER W+ EI+S S S++GGYKE+I RI G +S+LKFESG
Sbjct: 121 GEESALFAGDLLRMYTRFAERQRWQVEIMSESESDLGGYKEVIVRIAGDAAFSRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TE QGRIHTSACTVAV+PEADE+ D+ INP+DLRIDT+RASGAGGQH+NKT
Sbjct: 181 GHRVQRVPATEAQGRIHTSACTVAVMPEADEVGDVEINPSDLRIDTFRASGAGGQHVNKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVR+TH+PTGIVV+CQ+DRSQH+NK A+K+L ARIKD ++R Q+ A RR LIGS
Sbjct: 241 DSAVRLTHLPTGIVVECQDDRSQHRNKDKAMKVLAARIKDQQMRAAQAKEASTRRNLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSDRIRTY 310
|
Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 570 | ||||||
| 193222210 | 361 | Peptide chain release factor 1 (RF-1) [H | 0.543 | 0.858 | 0.654 | 1e-120 | |
| 152980137 | 360 | peptide chain release factor 1 [Janthino | 0.543 | 0.861 | 0.651 | 1e-120 | |
| 134093473 | 356 | peptide chain release factor 1 [Herminii | 0.536 | 0.859 | 0.656 | 1e-120 | |
| 445494095 | 371 | peptide chain release factor 1 [Janthino | 0.543 | 0.835 | 0.651 | 1e-120 | |
| 398832820 | 359 | peptide chain release factor 1 [Herbaspi | 0.543 | 0.863 | 0.641 | 1e-118 | |
| 399019154 | 356 | peptide chain release factor 1 [Herbaspi | 0.536 | 0.859 | 0.647 | 1e-118 | |
| 409408061 | 355 | peptide chain release factor 1 [Herbaspi | 0.536 | 0.861 | 0.640 | 1e-117 | |
| 415942784 | 355 | Peptide chain release factor 1 [Herbaspi | 0.536 | 0.861 | 0.637 | 1e-117 | |
| 300313560 | 359 | peptide chain release factor 1 [Herbaspi | 0.543 | 0.863 | 0.635 | 1e-117 | |
| 395760366 | 358 | peptide chain release factor 1 [Janthino | 0.543 | 0.865 | 0.638 | 1e-117 |
| >gi|193222210|emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 440 bits (1131), Expect = e-120, Method: Compositional matrix adjust.
Identities = 203/310 (65%), Positives = 251/310 (80%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ML+KL++ ++RL EL+ LL Q++ +N+ +Y K REH+ L P+V LY NY + +
Sbjct: 2 MKPSMLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADN 61
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI A+ ML+D +M+ FA +E+ AK R+ +EL+++K++LPKD ND+RNIF+EIRAGTG
Sbjct: 62 DIKDAQGMLSDPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTG 121
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY RF+ERN W+ E++S S SE+GGYKE+I RI+G YSKLKFESG
Sbjct: 122 GDESALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESG 181
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADE+ED+NINPADLRIDTYRASGAGGQHINKT
Sbjct: 182 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKT 241
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVRITHIPTGIVV+CQ+DRSQHKNKA ALK+L ARIKD +LREQQS A R+ LIGS
Sbjct: 242 DSAVRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKSLIGS 301
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 302 GDRSERIRTY 311
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980137|ref|YP_001351903.1| peptide chain release factor 1 [Janthinobacterium sp. Marseille] gi|166223564|sp|A6SUF6.1|RF1_JANMA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|151280214|gb|ABR88624.1| RF-1 peptide chain release factor [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/310 (65%), Positives = 251/310 (80%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ML+KL++ ++RL EL+ LL Q++ +N+ +Y K REH+ L P+V LY NY++ +
Sbjct: 1 MKPSMLAKLDQLTERLDELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYRQADS 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI A+ ML+D +M+ FA +EI AK R+ +E++++K++LPKD ND RNIF+EIRAGTG
Sbjct: 61 DIQDAQGMLSDPDMKEFAQEEIAAAKTRMEQLEIDLQKMLLPKDPNDDRNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDE+ALF DLLRMY RF+ERN W+ E++S S SE+GGYKE+I RIIG YSKLKFESG
Sbjct: 121 GDEAALFAGDLLRMYSRFAERNRWQIEMVSESASEVGGYKEVIVRIIGFGAYSKLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVA++PEADE+ED+NINPADLRIDTYRASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAIMPEADEVEDVNINPADLRIDTYRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVRITHIPTGIVV+CQ+DRSQHKNKA ALK+L ARIKD +LREQQS A R+ LIGS
Sbjct: 241 DSAVRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134093473|ref|YP_001098548.1| peptide chain release factor 1 [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/306 (65%), Positives = 249/306 (81%)
Query: 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIIT 64
ML+KL++ ++RL EL+ LL Q++ +N+ +Y K REH+ L P+V LY NY + + DI
Sbjct: 1 MLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADNDIKD 60
Query: 65 AKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
A+ ML+D +M+ FA +E+ AK R+ +EL+++K++LPKD ND+RNIF+EIRAGTGGDES
Sbjct: 61 AQGMLSDPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 120
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
ALF DLLRMY RF+ERN W+ E++S S SE+GGYKE+I RI+G YSKLKFESG HRV
Sbjct: 121 ALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHRV 180
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
QRVP TETQGRIHTSACTVAV+PEADE+ED+NINPADLRIDTYRASGAGGQHINKTDSAV
Sbjct: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSAV 240
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKK 304
RITHIPTGIVV+CQ+DRSQHKNKA ALK+L ARIKD +LREQQS A R+ LIGS +
Sbjct: 241 RITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKSLIGSGDRS 300
Query: 305 SPLNIF 310
+ +
Sbjct: 301 ERIRTY 306
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|445494095|ref|ZP_21461139.1| peptide chain release factor 1 [Janthinobacterium sp. HH01] gi|444790256|gb|ELX11803.1| peptide chain release factor 1 [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/310 (65%), Positives = 250/310 (80%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ML+KL++ + RL ELD LL + NN+ Y K REH+ L P+V LY +Y++
Sbjct: 14 MKPSMLAKLDQLANRLVELDELLMSEGATNNMDAYRKMTREHAELGPLVALYKSYQEAIG 73
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
D+ A+EML D EM++FA DEI AK R+ ++ELE++K++LPKD ND+RNIF+EIRAGTG
Sbjct: 74 DLAAAQEMLGDPEMKDFAQDEIEAAKTRLAELELELQKMLLPKDANDERNIFLEIRAGTG 133
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY RF+ERN W+ E++S S S++GGY+E+I R+IG +VYSKLKFESG
Sbjct: 134 GDESALFAGDLLRMYTRFAERNRWQVEVVSESASDLGGYREVIVRLIGNSVYSKLKFESG 193
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADE+ED+NINPADLRIDTYRASGAGGQHINKT
Sbjct: 194 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKT 253
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVRITH+PTGIVV+CQ+DRSQHKNKA A+++L RIKD +LREQQS A R+ LIGS
Sbjct: 254 DSAVRITHLPTGIVVECQDDRSQHKNKAQAMRVLATRIKDVQLREQQSKEAATRKSLIGS 313
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 314 GDRSERIRTY 323
|
Source: Janthinobacterium sp. HH01 Species: Janthinobacterium sp. HH01 Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398832820|ref|ZP_10590970.1| peptide chain release factor 1 [Herbaspirillum sp. YR522] gi|398222599|gb|EJN08969.1| peptide chain release factor 1 [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 199/310 (64%), Positives = 253/310 (81%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ML+KL++ S+RL+EL+ LL Q++ ++ Y K REH+ L P+V LY++Y +
Sbjct: 1 MKPSMLAKLDQLSERLEELNSLLAQEDATASMDVYRKMTREHAELGPLVALYHDYVQAGA 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI TA+E+L+D +M++FA DEI+ A+ R+ +E +++K++LPKD ND+RNIF+EIRAGTG
Sbjct: 61 DIGTAQELLSDPDMKDFAQDEIDAARARMAALEGDLQKMLLPKDPNDERNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY R++ER W+ EI+S S SE+GGYKE+IARI GL YS+LKFESG
Sbjct: 121 GDESALFAGDLLRMYTRYAERMRWQVEIVSASESELGGYKEVIARIAGLGAYSRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADE+ED++INPADLRIDTYRASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVRITH+PTGIVV+CQ+DRSQHKNKA A+K+L ARIKD +LR+QQS A R+ LIGS
Sbjct: 241 DSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399019154|ref|ZP_10721303.1| peptide chain release factor 1 [Herbaspirillum sp. CF444] gi|398098301|gb|EJL88588.1| peptide chain release factor 1 [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 198/306 (64%), Positives = 250/306 (81%)
Query: 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIIT 64
ML+KL++ ++RL+EL+ LL Q++ +++ +Y K REH+ L P+V LY+ Y + DI T
Sbjct: 1 MLAKLDQLAERLEELNNLLMQEDATSDMDNYRKMTREHAELGPLVALYHTYSQAANDIAT 60
Query: 65 AKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
A+E+L+D +M+ FA +EIN AK R+ +E +++K++LPKD ND+RNIF+EIRAGTGGDES
Sbjct: 61 AQELLSDPDMKEFAQEEINGAKARMEALEGDLQKMLLPKDPNDERNIFLEIRAGTGGDES 120
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
ALF DLLRMY RF+ERN W+ E++S S SEIGGYKE+I RI G YS+LKFESG HRV
Sbjct: 121 ALFAGDLLRMYTRFAERNRWQVEMMSASESEIGGYKEVIVRIAGFGAYSRLKFESGGHRV 180
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
QRVP TETQGRIHTSACTVAV+PEADE+ED++INPAD+RIDTYRASGAGGQHINKTDSAV
Sbjct: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKK 304
RITH+PTGIVV+CQ+DRSQHKNKA ALK+L ARIKD +LREQQS A R+ LIGS +
Sbjct: 241 RITHMPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300
Query: 305 SPLNIF 310
+ +
Sbjct: 301 ERIRTY 306
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|409408061|ref|ZP_11256505.1| peptide chain release factor 1 [Herbaspirillum sp. GW103] gi|386432517|gb|EIJ45344.1| peptide chain release factor 1 [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1106), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/306 (64%), Positives = 252/306 (82%)
Query: 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIIT 64
ML+KL++ ++RL+EL+ LL Q++ ++ ++ K REH+ L P+V LY++Y + +EDI T
Sbjct: 1 MLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHDYVQASEDIRT 60
Query: 65 AKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
A E+L+D +M+ FA +EI+ A+ R+ +EL+++K++LPKD ND+RNIF+EIRAGTGGDES
Sbjct: 61 AGELLSDPDMKAFAQEEIDAARARMEALELDLQKMLLPKDPNDERNIFLEIRAGTGGDES 120
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
ALF DLLRMY R++ER W+ EI+S S SE+GGYKE+IARI G YS+LKFESG HRV
Sbjct: 121 ALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIAGFGAYSRLKFESGGHRV 180
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
QRVP TETQGRIHTSACTVAV+PEADE+ED++INPADLRIDTYRASGAGGQHINKTDSAV
Sbjct: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADLRIDTYRASGAGGQHINKTDSAV 240
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKK 304
RITH+PTGIVV+CQ+DRSQHKNKA A+K+L ARIKD +LREQQS A R+ LIGS +
Sbjct: 241 RITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300
Query: 305 SPLNIF 310
+ +
Sbjct: 301 ERIRTY 306
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415942784|ref|ZP_11555980.1| Peptide chain release factor 1 [Herbaspirillum frisingense GSF30] gi|407758794|gb|EKF68568.1| Peptide chain release factor 1 [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 430 bits (1105), Expect = e-117, Method: Compositional matrix adjust.
Identities = 195/306 (63%), Positives = 253/306 (82%)
Query: 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIIT 64
ML+KL++ ++RL+EL+ LL Q++ N+ ++ K REH+ L P+V LY++Y + +DI T
Sbjct: 1 MLAKLDQLAERLEELNSLLAQEDATANMDNFRKMTREHAELGPLVALYHDYVQAGDDIRT 60
Query: 65 AKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
A+E+L+D +M+ FA +EI+ AK R+ +EL+++K++LP+D ND+RNIF+EIRAGTGGDES
Sbjct: 61 AQELLSDPDMKAFAQEEIDGAKARMEALELDLQKMLLPRDPNDERNIFLEIRAGTGGDES 120
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
ALF DLLRMY R++ER W+ EI+S S SE+GGYKE+IARI+G YS+LKFESG HRV
Sbjct: 121 ALFAGDLLRMYTRYAERQRWQVEIVSSSESELGGYKEVIARIVGFGAYSRLKFESGGHRV 180
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
QRVP TETQGRIHTSACTVAV+PEADE+ED++INPAD+RIDTYRASGAGGQHINKTDSAV
Sbjct: 181 QRVPATETQGRIHTSACTVAVMPEADEVEDVDINPADIRIDTYRASGAGGQHINKTDSAV 240
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKK 304
RITH+PTGIVV+CQ+DRSQHKNKA A+K+L ARIKD +LREQQS A R+ LIGS +
Sbjct: 241 RITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLREQQSKEAATRKSLIGSGDRS 300
Query: 305 SPLNIF 310
+ +
Sbjct: 301 ERIRTY 306
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300313560|ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirillum seropedicae SmR1] gi|300076345|gb|ADJ65744.1| peptide chain release factor 1 (RF-1) protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 197/310 (63%), Positives = 252/310 (81%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ML+KL++ ++RL+EL+ LL Q++ ++ ++ K REH+ L P+V LY+ Y + E
Sbjct: 1 MKPSMLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHEYVQAAE 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI TA+E+L D +M+ FA +EI+ AK R+ +EL+++K++LPKD ND+RNIF+EIRAGTG
Sbjct: 61 DIRTAQELLADPDMKAFAQEEIDGAKARMEGLELDLQKMLLPKDPNDERNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY R++ER W+ EI+S S SE+GGYKE+IARI+GL YS+LKFESG
Sbjct: 121 GDESALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGLGAYSRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADE+ D+ INPAD+RIDTYRASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVGDVEINPADIRIDTYRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVRITH+PTGIVV+CQ+DRSQHKNKA A+K+L ARIKD +LR+QQS A R+ LIGS
Sbjct: 241 DSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSEEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|395760366|ref|ZP_10441035.1| peptide chain release factor 1 [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 198/310 (63%), Positives = 245/310 (79%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ML+KL++ + RL ELD LL + +N+ Y K REH+ L P+V LY Y++ +
Sbjct: 1 MKPSMLAKLDQLANRLVELDELLMHPDATSNMDSYRKMTREHAELGPLVALYRCYQEAGD 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI TA+EML D +M+ FA +EI AK + +E E++ ++LPKD ND+RNIF+EIRAGTG
Sbjct: 61 DITTAQEMLGDPDMKQFAQEEIEAAKATMARLERELQTMLLPKDVNDERNIFLEIRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDESALF DLLRMY RF+ERN W+ E++S S S++GGY+E+I R++G YSKLKFESG
Sbjct: 121 GDESALFAGDLLRMYSRFAERNRWQVELVSSSDSDLGGYREVIVRVVGNGAYSKLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TETQGRIHTSACTVAV+PEADE+ED+NINPADLRIDTYRASGAGGQHINKT
Sbjct: 181 GHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSAVRITH+PTGIVV+CQ+DRSQHKNKA A+K+L ARIKD +LREQQS A R+ LIGS
Sbjct: 241 DSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLREQQSKEAATRKSLIGS 300
Query: 301 VQKKSPLNIF 310
+ + +
Sbjct: 301 GDRSERIRTY 310
|
Source: Janthinobacterium lividum PAMC 25724 Species: Janthinobacterium lividum Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 570 | ||||||
| TIGR_CMR|GSU_3104 | 355 | GSU_3104 "peptide chain releas | 0.535 | 0.859 | 0.549 | 8e-85 | |
| UNIPROTKB|P0A7I0 | 360 | prfA "peptide chain release fa | 0.526 | 0.833 | 0.54 | 8.5e-81 | |
| TIGR_CMR|CBU_1965 | 361 | CBU_1965 "peptide chain releas | 0.543 | 0.858 | 0.490 | 4.2e-79 | |
| UNIPROTKB|Q9KQ25 | 362 | prfA "Peptide chain release fa | 0.543 | 0.856 | 0.503 | 4.3e-77 | |
| TIGR_CMR|VC_2179 | 362 | VC_2179 "peptide chain release | 0.543 | 0.856 | 0.503 | 4.3e-77 | |
| TIGR_CMR|CPS_3552 | 362 | CPS_3552 "peptide chain releas | 0.543 | 0.856 | 0.477 | 3.9e-76 | |
| TIGR_CMR|SO_3833 | 363 | SO_3833 "peptide chain release | 0.526 | 0.826 | 0.516 | 2.7e-75 | |
| TIGR_CMR|CHY_2563 | 358 | CHY_2563 "peptide chain releas | 0.535 | 0.851 | 0.482 | 5.7e-75 | |
| TIGR_CMR|CJE_1784 | 355 | CJE_1784 "peptide chain releas | 0.536 | 0.861 | 0.482 | 6.7e-72 | |
| TIGR_CMR|NSE_0406 | 367 | NSE_0406 "peptide chain releas | 0.473 | 0.735 | 0.516 | 3e-69 |
| TIGR_CMR|GSU_3104 GSU_3104 "peptide chain release factor 1" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
Identities = 168/306 (54%), Positives = 223/306 (72%)
Query: 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIIT 64
M K+E+ R EL+ LL V N ++ + REH+ L P++E Y YKK+ E++
Sbjct: 1 MFEKIEELEVRYHELESLLADPAVLGNQPEFRRLSREHNDLTPLIESYRTYKKVLEEMEG 60
Query: 65 AKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
+E+L D EM+ A E+ ++R ++E EIK L+LP+D ND RN+ +EIRAGTGGDES
Sbjct: 61 NRELLADPEMKEMAQAELEELEQRQEELEGEIKLLLLPRDPNDDRNVILEIRAGTGGDES 120
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
ALF DL RMY RF+ERN WK E++S S SE GG+KEI+A I G V++KLK+ESG HRV
Sbjct: 121 ALFAGDLFRMYSRFAERNRWKVEVMSASESERGGFKEIVALIEGQGVFAKLKYESGTHRV 180
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
QRVP+TE QGRIHTSACTVAV+PEA++IE ++INPADL+ID YRASGAGGQH+NKT+SAV
Sbjct: 181 QRVPETEAQGRIHTSACTVAVLPEAEDIE-VDINPADLKIDVYRASGAGGQHVNKTESAV 239
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKK 304
RITHIPTGIVV+CQ++RSQ KN+A A+K+L +I D +EQ + A R+ +GS +
Sbjct: 240 RITHIPTGIVVECQDERSQIKNRAKAMKVLKTKILDGLHQEQNARIAADRKQQVGSGDRS 299
Query: 305 SPLNIF 310
+ +
Sbjct: 300 ERIRTY 305
|
|
| UNIPROTKB|P0A7I0 prfA "peptide chain release factor RF1" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 162/300 (54%), Positives = 221/300 (73%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK +++KLE +R +E+ LL + + + + RE++ L + + +++++ E
Sbjct: 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI TA+ ML+D EMR A DE+ AK++ +E +++ L+LPKD +D+RN F+E+RAGTG
Sbjct: 61 DIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDE+ALF DL RMY R++E W+ EI+S S E GGYKEIIA+I G VY +LKFESG
Sbjct: 121 GDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TE+QGRIHTSACTVAV+PE + E +INPADLRIDT+R+SGAGGQH+N T
Sbjct: 181 GHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSA+RITH+PTGIVV+CQ++RSQHKNKA AL +L ARI +++ ++Q A RR L+GS
Sbjct: 241 DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGS 300
|
|
| TIGR_CMR|CBU_1965 CBU_1965 "peptide chain release factor 1" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 153/312 (49%), Positives = 223/312 (71%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ++ KL+ + R E+ LL+ V N+ Y + +E++ L PIV+ + +++ +
Sbjct: 1 MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQLEPIVKCFQQFQQNEK 60
Query: 61 DIITAKEMLN--DLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAG 118
I +A+EM D E+R A +E+ + ++E ++K L++PKD ND+RN+F+EIRAG
Sbjct: 61 AIESAEEMQQEKDPELRKLAEEELEQLTLKKEELEDQLKLLLVPKDPNDERNVFLEIRAG 120
Query: 119 TGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
TGG+E+A+F DL RMY R++E W+ I+S E GG+KE+IAR+IG VYS+LKFE
Sbjct: 121 TGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEGEHGGFKEVIARVIGEGVYSQLKFE 180
Query: 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238
SG HRVQRVP TE+QGRIHTSACTVA++PE DEI+ I INPA+LRIDT+RASGAGGQH+N
Sbjct: 181 SGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIKINPAELRIDTFRASGAGGQHVN 240
Query: 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLI 298
+TDSA+RITH+PTG+VV+CQ++RSQHKNKA A+ +L +++ ++ +Q A R+ L+
Sbjct: 241 RTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLLQSKLLAAERAKQDQEQAAKRKSLV 300
Query: 299 GSVQKKSPLNIF 310
GS + + +
Sbjct: 301 GSGDRSERIRTY 312
|
|
| UNIPROTKB|Q9KQ25 prfA "Peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 157/312 (50%), Positives = 212/312 (67%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK +LSKLE +R +E+ LL V + + +E+S L I + + Y++ E
Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60
Query: 61 DIITAKEML--NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAG 118
D++ A+EM +D EMR A DEI AK I + E++ L+LPKD ND RN F+EIRAG
Sbjct: 61 DLVAAEEMAQEDDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAG 120
Query: 119 TGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
GGDE+ +F DL RMY RF+E+ W+ E++S S +E GGYKE+IA++ G Y LKFE
Sbjct: 121 AGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFE 180
Query: 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238
SG HRVQRVP TE QGRIHTSACTVAV+PE E E I +DL+IDT+R+SGAGGQH+N
Sbjct: 181 SGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVN 240
Query: 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLI 298
TDSA+RITH+PTGIVV+CQ++RSQHKNKA A+ +L ARI ++ ++ + + RR L+
Sbjct: 241 TTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLL 300
Query: 299 GSVQKKSPLNIF 310
GS + + +
Sbjct: 301 GSGDRSDRIRTY 312
|
|
| TIGR_CMR|VC_2179 VC_2179 "peptide chain release factor 1" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
Identities = 157/312 (50%), Positives = 212/312 (67%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK +LSKLE +R +E+ LL V + + +E+S L I + + Y++ E
Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60
Query: 61 DIITAKEML--NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAG 118
D++ A+EM +D EMR A DEI AK I + E++ L+LPKD ND RN F+EIRAG
Sbjct: 61 DLVAAEEMAQEDDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIRAG 120
Query: 119 TGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
GGDE+ +F DL RMY RF+E+ W+ E++S S +E GGYKE+IA++ G Y LKFE
Sbjct: 121 AGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLKFE 180
Query: 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238
SG HRVQRVP TE QGRIHTSACTVAV+PE E E I +DL+IDT+R+SGAGGQH+N
Sbjct: 181 SGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQHVN 240
Query: 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLI 298
TDSA+RITH+PTGIVV+CQ++RSQHKNKA A+ +L ARI ++ ++ + + RR L+
Sbjct: 241 TTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRNLL 300
Query: 299 GSVQKKSPLNIF 310
GS + + +
Sbjct: 301 GSGDRSDRIRTY 312
|
|
| TIGR_CMR|CPS_3552 CPS_3552 "peptide chain release factor 1" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 149/312 (47%), Positives = 212/312 (67%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK + KLE +R +E+ LL+ ++ + + +E L + ++NNYK +
Sbjct: 1 MKSSVYQKLEVLVERFEEVQALLSDPATISDQEKFRALSKEFKQLDAVTSVFNNYKSAED 60
Query: 61 DIITAKEML--NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAG 118
D TA+ ML +D +MR A +E AKK + DI E++ L+LP+D ND N F+EIRAG
Sbjct: 61 DFSTAELMLKDDDPDMREMAQEEFKDAKKAVADIADELQILLLPRDPNDDNNCFVEIRAG 120
Query: 119 TGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
GGDE+A+F DL RMY R++E+ WK E+++ + SE GGYKE+I ++ G V+ +KFE
Sbjct: 121 AGGDEAAIFAGDLFRMYSRYAEKKGWKIEVMNSNESEQGGYKELIMKVNGEGVFGHMKFE 180
Query: 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238
SG HRVQRVP TE+QGR+HTSACTV V+PE E + I IN ADL++DT+RASGAGGQH+N
Sbjct: 181 SGGHRVQRVPATESQGRVHTSACTVVVMPEIPEADAIEINKADLKVDTFRASGAGGQHVN 240
Query: 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLI 298
KTDSA+RITHIPTG+VV+CQ RSQHKN+A A+ +L AR++ ++ +++S RR L+
Sbjct: 241 KTDSAIRITHIPTGVVVECQEQRSQHKNRAQAMSVLQARLQQAEDEKRRSEEESSRRNLV 300
Query: 299 GSVQKKSPLNIF 310
S + + +
Sbjct: 301 ASGDRSERIRTY 312
|
|
| TIGR_CMR|SO_3833 SO_3833 "peptide chain release factor 1" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 759 (272.2 bits), Expect = 2.7e-75, P = 2.7e-75
Identities = 156/302 (51%), Positives = 210/302 (69%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK ++ KLE +R +E+ LL V + + +E+S L +V + Y++
Sbjct: 1 MKESVIRKLEGLLERNEEVLALLGDASVIADQDRFRALSKEYSQLEEVVAGFKAYQQAQA 60
Query: 61 DIITAKEML--NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAG 118
D+ +AKEML +D EMR A +EI AK + +E E++ L+LPKD ND N FIEIRAG
Sbjct: 61 DLESAKEMLEEDDAEMREMAQEEIKAAKVELERLEAELQILLLPKDPNDDTNAFIEIRAG 120
Query: 119 TGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
GGDE+A+F DL RMY R++E N W+ EI+S + E GG+KEII ++ G Y KLKFE
Sbjct: 121 AGGDEAAIFAGDLFRMYSRYAEANRWQLEIMSSNEGEHGGFKEIIVKVSGEGAYGKLKFE 180
Query: 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238
SG HRVQRVP+TE+QGR+HTSA TV V+ E E E I+INPADL++DT+R+SGAGGQH+N
Sbjct: 181 SGGHRVQRVPETESQGRVHTSAVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQHVN 240
Query: 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLI 298
KTDSA+RITHIPTGIVV+CQ+ RSQHKN+A A+ +L ARI+ + +++S RR L+
Sbjct: 241 KTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRSLV 300
Query: 299 GS 300
S
Sbjct: 301 AS 302
|
|
| TIGR_CMR|CHY_2563 CHY_2563 "peptide chain release factor 1" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 149/309 (48%), Positives = 217/309 (70%)
Query: 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIIT 64
M KL++ ++ +EL L++ EV + + + V+ H+ + IV++Y YKK ++I
Sbjct: 1 MFDKLDQLEEKYEELSRLISDPEVIADTQRWQGYVKAHAEIEEIVQVYREYKKTVKEIED 60
Query: 65 AKEMLN---DLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGG 121
A+ ML+ D + R E++ K+R ++E ++K L+LPKD ND++N+ +EIRAG GG
Sbjct: 61 AERMLDEKLDPDFRELVQSELHDLKERREELEAKLKILLLPKDPNDEKNVIMEIRAGAGG 120
Query: 122 DESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGV 181
+E+ALF DL RMY ++++R WK EI+ +++GG+KE+I I G VYS++KFESGV
Sbjct: 121 EEAALFAGDLFRMYSKYADRMGWKVEIMDSHPTDLGGFKEVIFTIEGKGVYSRMKFESGV 180
Query: 182 HRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTD 241
HRVQRVP TE+ GRIHTS TVAV+PEA+E+E + INP DLRID + ASGAGGQH+NKT+
Sbjct: 181 HRVQRVPTTESGGRIHTSTATVAVLPEAEEVE-VEINPNDLRIDVFCASGAGGQHVNKTE 239
Query: 242 SAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSV 301
SAVRITHIPTGIVV CQ+++SQHKNK A+KIL AR+ D +EQ++ A R+ +G+
Sbjct: 240 SAVRITHIPTGIVVTCQDEKSQHKNKERAMKILRARLLDKARQEQEAELASARKSQVGTG 299
Query: 302 QKKSPLNIF 310
+ + +
Sbjct: 300 DRSERIRTY 308
|
|
| TIGR_CMR|CJE_1784 CJE_1784 "peptide chain release factor 1" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 148/307 (48%), Positives = 208/307 (67%)
Query: 4 LMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDII 63
++ SKL+ F KR +EL+ LL+ ++ N+I +E L PIV Y K ++I
Sbjct: 1 MLASKLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEPIVLKAKEYLKTLDNIE 60
Query: 64 TAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDE 123
K +LND E+ A +E+ ++ +E EIK L+LPKD ND+RNIF+EIRAG GGDE
Sbjct: 61 ENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGAGGDE 120
Query: 124 SALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHR 183
++LFV DL++ Y R++E +K EI+S S +GG+KEII + G YS+LK+E G HR
Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180
Query: 184 VQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSA 243
VQRVP+TE+QGR+HTSA TVAV+PE D+IE I INP DL++D R+SG GGQ +N TDSA
Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIE-IEINPNDLKVDVMRSSGHGGQSVNTTDSA 239
Query: 244 VRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQK 303
VRITHIPTGIVV Q+ +SQHKNK A+K+L AR+ + + E+ + ++ R+ +GS +
Sbjct: 240 VRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDR 299
Query: 304 KSPLNIF 310
+ +
Sbjct: 300 SERIRTY 306
|
|
| TIGR_CMR|NSE_0406 NSE_0406 "peptide chain release factor 1" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 142/275 (51%), Positives = 195/275 (70%)
Query: 33 KDYCKKVREHSFLYPIVELYNNYKKINEDI----ITAKEMLNDLEMRNFALDEINLAKKR 88
+++ K +E++ L P VEL YKK+ E+ + K L D E+R ++ +
Sbjct: 31 QEFSKLSKEYAELKPKVELIARYKKLKEEQAYLELLVKNPLEDQEIREIGKSDLQAIQDV 90
Query: 89 IFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEI 148
I +ELEIK+++LPKDK+D N+ +E+RAGTGGDE+ALF L MY +++ER W+FEI
Sbjct: 91 IPKLELEIKRMLLPKDKDDALNVMLEVRAGTGGDEAALFAASLFHMYQKYAERMKWRFEI 150
Query: 149 ISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPE 208
IS S +EIGGYKE A I G +V++KLKFESGVHRVQRVP+TE+ GRIHTS TVAV+PE
Sbjct: 151 ISISHNEIGGYKEANASISGSDVFAKLKFESGVHRVQRVPETESAGRIHTSTATVAVLPE 210
Query: 209 ADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKA 268
+++ D+ IN DLRID YR+SG GGQ +N TDSAVRITHIPTGIVV Q+++SQHKN+A
Sbjct: 211 PEDV-DVKINDKDLRIDVYRSSGPGGQSVNTTDSAVRITHIPTGIVVIQQDEKSQHKNRA 269
Query: 269 FALKILLARIKDSKLREQQSNTAKMRRLLIGSVQK 303
A+K+L R+ + + + Q + MR+ IGS ++
Sbjct: 270 KAMKVLRVRLYEIERNKVQQEISSMRKSQIGSGER 304
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B2JHK8 | RF1_BURP8 | No assigned EC number | 0.6032 | 0.5438 | 0.8611 | yes | N/A |
| Q7P1Y2 | RF1_CHRVO | No assigned EC number | 0.5677 | 0.5438 | 0.8659 | yes | N/A |
| Q7W023 | RF1_BORPE | No assigned EC number | 0.5709 | 0.5438 | 0.8611 | yes | N/A |
| A3MFT4 | RF1_BURM7 | No assigned EC number | 0.5903 | 0.5438 | 0.8611 | yes | N/A |
| Q5F750 | RF1_NEIG1 | No assigned EC number | 0.6 | 0.5438 | 0.8659 | yes | N/A |
| A9AJ68 | RF1_BURM1 | No assigned EC number | 0.6 | 0.5438 | 0.8611 | yes | N/A |
| Q39K18 | RF1_BURS3 | No assigned EC number | 0.6096 | 0.5438 | 0.8611 | yes | N/A |
| A6SUF6 | RF1_JANMA | No assigned EC number | 0.6516 | 0.5438 | 0.8611 | yes | N/A |
| C5CXW3 | RF1_VARPS | No assigned EC number | 0.5612 | 0.5438 | 0.8563 | yes | N/A |
| Q5P7G7 | RF1_AROAE | No assigned EC number | 0.5612 | 0.5438 | 0.8635 | yes | N/A |
| Q3SG10 | RF1_THIDA | No assigned EC number | 0.5838 | 0.5438 | 0.8611 | yes | N/A |
| Q0AHU1 | RF1_NITEC | No assigned EC number | 0.5741 | 0.5438 | 0.8635 | yes | N/A |
| Q9JT75 | RF1_NEIMA | No assigned EC number | 0.6064 | 0.5438 | 0.8659 | yes | N/A |
| Q1GYE8 | RF1_METFK | No assigned EC number | 0.6129 | 0.5438 | 0.8611 | yes | N/A |
| B1YSD5 | RF1_BURA4 | No assigned EC number | 0.6032 | 0.5438 | 0.8611 | yes | N/A |
| B4RN52 | RF1_NEIG2 | No assigned EC number | 0.5967 | 0.5438 | 0.8659 | yes | N/A |
| Q13TU2 | RF1_BURXL | No assigned EC number | 0.6064 | 0.5438 | 0.8611 | yes | N/A |
| B1XSY0 | RF1_POLNS | No assigned EC number | 0.5548 | 0.5438 | 0.8635 | yes | N/A |
| Q3JN85 | RF1_BURP1 | No assigned EC number | 0.5935 | 0.5438 | 0.8611 | yes | N/A |
| Q7WCE3 | RF1_BORPA | No assigned EC number | 0.5677 | 0.5438 | 0.8611 | yes | N/A |
| B3R722 | RF1_CUPTR | No assigned EC number | 0.5709 | 0.5438 | 0.8611 | yes | N/A |
| Q7WQE9 | RF1_BORBR | No assigned EC number | 0.5709 | 0.5438 | 0.8611 | yes | N/A |
| A2RYL2 | RF1_BURM9 | No assigned EC number | 0.5903 | 0.5438 | 0.8611 | yes | N/A |
| A1UWC9 | RF1_BURMS | No assigned EC number | 0.5903 | 0.5438 | 0.8611 | yes | N/A |
| Q82TH4 | RF1_NITEU | No assigned EC number | 0.5741 | 0.5438 | 0.8635 | yes | N/A |
| Q1LIF3 | RF1_RALME | No assigned EC number | 0.5645 | 0.5438 | 0.8611 | yes | N/A |
| A4JB50 | RF1_BURVG | No assigned EC number | 0.6 | 0.5438 | 0.8611 | yes | N/A |
| A3NE24 | RF1_BURP6 | No assigned EC number | 0.5935 | 0.5438 | 0.8611 | yes | N/A |
| B2UDM7 | RF1_RALPJ | No assigned EC number | 0.5870 | 0.5438 | 0.8611 | yes | N/A |
| A1W4B8 | RF1_ACISJ | No assigned EC number | 0.5283 | 0.5438 | 0.8446 | yes | N/A |
| Q46WS9 | RF1_CUPPJ | No assigned EC number | 0.5838 | 0.5438 | 0.8611 | yes | N/A |
| A3NZS4 | RF1_BURP0 | No assigned EC number | 0.5935 | 0.5438 | 0.8611 | yes | N/A |
| Q2SUG2 | RF1_BURTA | No assigned EC number | 0.5935 | 0.5438 | 0.8611 | yes | N/A |
| Q63QF0 | RF1_BURPS | No assigned EC number | 0.5935 | 0.5438 | 0.8611 | yes | N/A |
| Q0BIQ0 | RF1_BURCM | No assigned EC number | 0.6032 | 0.5438 | 0.8611 | yes | N/A |
| Q2Y5P3 | RF1_NITMU | No assigned EC number | 0.6096 | 0.5438 | 0.8659 | yes | N/A |
| B4E6U6 | RF1_BURCJ | No assigned EC number | 0.6064 | 0.5438 | 0.8611 | yes | N/A |
| A1KV95 | RF1_NEIMF | No assigned EC number | 0.6032 | 0.5438 | 0.8659 | yes | N/A |
| A4SV43 | RF1_POLSQ | No assigned EC number | 0.5741 | 0.5438 | 0.8635 | yes | N/A |
| Q2KZZ3 | RF1_BORA1 | No assigned EC number | 0.5774 | 0.5438 | 0.8611 | yes | N/A |
| A1K443 | RF1_AZOSB | No assigned EC number | 0.5548 | 0.5438 | 0.8587 | yes | N/A |
| B1JUS4 | RF1_BURCC | No assigned EC number | 0.6064 | 0.5438 | 0.8611 | yes | N/A |
| Q62DF3 | RF1_BURMA | No assigned EC number | 0.5903 | 0.5438 | 0.8611 | yes | N/A |
| Q1BSB1 | RF1_BURCA | No assigned EC number | 0.6064 | 0.5438 | 0.8611 | yes | N/A |
| A0K437 | RF1_BURCH | No assigned EC number | 0.6064 | 0.5438 | 0.8611 | yes | N/A |
| Q8XVD0 | RF1_RALSO | No assigned EC number | 0.5838 | 0.5438 | 0.8611 | yes | N/A |
| B2SZ27 | RF1_BURPP | No assigned EC number | 0.6096 | 0.5438 | 0.8611 | yes | N/A |
| A9M1Q8 | RF1_NEIM0 | No assigned EC number | 0.6 | 0.5438 | 0.8659 | yes | N/A |
| Q9JY93 | RF1_NEIMB | No assigned EC number | 0.6064 | 0.5438 | 0.8659 | yes | N/A |
| A9IER8 | RF1_BORPD | No assigned EC number | 0.5677 | 0.5438 | 0.8611 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 570 | |||
| PRK00591 | 359 | PRK00591, prfA, peptide chain release factor 1; Va | 1e-175 | |
| COG0216 | 363 | COG0216, PrfA, Protein chain release factor A [Tra | 1e-162 | |
| TIGR00019 | 360 | TIGR00019, prfA, peptide chain release factor 1 | 1e-139 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 2e-98 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 2e-92 | |
| PRK00578 | 367 | PRK00578, prfB, peptide chain release factor 2; Va | 3e-85 | |
| TIGR00020 | 364 | TIGR00020, prfB, peptide chain release factor 2 | 5e-73 | |
| COG2890 | 280 | COG2890, HemK, Methylase of polypeptide chain rele | 5e-71 | |
| TIGR00536 | 284 | TIGR00536, hemK_fam, HemK family putative methylas | 7e-64 | |
| COG1186 | 239 | COG1186, PrfB, Protein chain release factor B [Tra | 2e-63 | |
| PRK14966 | 423 | PRK14966, PRK14966, unknown domain/N5-glutamine S- | 6e-60 | |
| PRK07342 | 339 | PRK07342, PRK07342, peptide chain release factor 2 | 4e-58 | |
| PRK05589 | 325 | PRK05589, PRK05589, peptide chain release factor 2 | 5e-58 | |
| PRK08787 | 313 | PRK08787, PRK08787, peptide chain release factor 2 | 3e-55 | |
| PRK06746 | 326 | PRK06746, PRK06746, peptide chain release factor 2 | 1e-47 | |
| smart00937 | 116 | smart00937, PCRF, This domain is found in peptide | 2e-46 | |
| pfam03462 | 115 | pfam03462, PCRF, PCRF domain | 1e-45 | |
| PRK01544 | 506 | PRK01544, PRK01544, bifunctional N5-glutamine S-ad | 8e-40 | |
| pfam00472 | 114 | pfam00472, RF-1, RF-1 domain | 9e-39 | |
| TIGR03533 | 284 | TIGR03533, L3_gln_methyl, protein-(glutamine-N5) m | 1e-26 | |
| TIGR03072 | 200 | TIGR03072, release_prfH, putative peptide chain re | 2e-26 | |
| PRK08179 | 200 | PRK08179, prfH, peptide chain release factor-like | 2e-26 | |
| PRK11805 | 307 | PRK11805, PRK11805, N5-glutamine S-adenosyl-L-meth | 2e-25 | |
| TIGR03704 | 251 | TIGR03704, PrmC_rel_meth, putative protein-(glutam | 2e-21 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 1e-17 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 8e-11 | |
| PRK14967 | 223 | PRK14967, PRK14967, putative methyltransferase; Pr | 8e-09 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 1e-08 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 4e-08 | |
| TIGR00537 | 179 | TIGR00537, hemK_rel_arch, HemK-related putative me | 4e-08 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 6e-08 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 1e-07 | |
| PRK09256 | 138 | PRK09256, PRK09256, hypothetical protein; Provisio | 2e-07 | |
| COG2813 | 300 | COG2813, RsmC, 16S RNA G1207 methylase RsmC [Trans | 4e-06 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 9e-06 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 1e-04 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-04 | |
| pfam01170 | 172 | pfam01170, UPF0020, Putative RNA methylase family | 3e-04 | |
| TIGR02987 | 524 | TIGR02987, met_A_Alw26, type II restriction m6 ade | 3e-04 | |
| COG2264 | 300 | COG2264, PrmA, Ribosomal protein L11 methylase [Tr | 5e-04 | |
| PRK09489 | 342 | PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltr | 7e-04 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 0.001 | |
| PRK14903 | 431 | PRK14903, PRK14903, 16S rRNA methyltransferase B; | 0.001 | |
| pfam06325 | 294 | pfam06325, PrmA, Ribosomal protein L11 methyltrans | 0.001 | |
| COG1092 | 393 | COG1092, COG1092, Predicted SAM-dependent methyltr | 0.001 | |
| PRK00517 | 250 | PRK00517, prmA, ribosomal protein L11 methyltransf | 0.002 |
| >gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated | Back alignment and domain information |
|---|
Score = 498 bits (1284), Expect = e-175
Identities = 176/302 (58%), Positives = 229/302 (75%), Gaps = 4/302 (1%)
Query: 2 KHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINED 61
K ML KLE +R +EL+ LL+ EV ++ K + K +E++ L PIVE Y YK+ ED
Sbjct: 1 KPSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQED 60
Query: 62 IITAKEMLN---DLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAG 118
+ AKEML D EMR A +E+ ++R+ ++E E+K L+LPKD ND +N+ +EIRAG
Sbjct: 61 LEEAKEMLEEESDPEMREMAKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAG 120
Query: 119 TGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
TGGDE+ALF DL RMY R++ER WK EI+S S E+GGYKE+IA I G VYSKLKFE
Sbjct: 121 TGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKFE 180
Query: 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238
SGVHRVQRVP TE+QGRIHTSA TVAV+PEA+E+ ++ INP DLRIDT+R+SGAGGQH+N
Sbjct: 181 SGVHRVQRVPATESQGRIHTSAATVAVLPEAEEV-EVEINPKDLRIDTFRSSGAGGQHVN 239
Query: 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLI 298
TDSAVRITH+PTGIVV+CQ++RSQHKNKA A+K+L AR+ D++ ++ Q+ A R+ +
Sbjct: 240 TTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQV 299
Query: 299 GS 300
GS
Sbjct: 300 GS 301
|
Length = 359 |
| >gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 466 bits (1201), Expect = e-162
Identities = 180/303 (59%), Positives = 229/303 (75%), Gaps = 3/303 (0%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK +L KLE +R +EL+ LL+ EV ++ +Y K +E++ L PIVE Y YKK E
Sbjct: 1 MKPSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQE 60
Query: 61 DIITAKEMLN---DLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRA 117
D+ AKEML D EMR A +EI + +I ++E E+K L+LPKD ND +NI +EIRA
Sbjct: 61 DLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRA 120
Query: 118 GTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKF 177
GTGGDE+ALF DL RMY R++E WK EI+S S SE+GGYKEIIA I G VYS+LKF
Sbjct: 121 GTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELGGYKEIIASISGKGVYSRLKF 180
Query: 178 ESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHI 237
ESGVHRVQRVP TE+QGRIHTSA TVAV+PE +E+E+I INP DLRIDT+R+SGAGGQH+
Sbjct: 181 ESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHV 240
Query: 238 NKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLL 297
N TDSAVRITH+PTGIVV+CQ++RSQHKNKA A+K+L AR+ D++ ++ Q+ A R+
Sbjct: 241 NTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQ 300
Query: 298 IGS 300
+GS
Sbjct: 301 VGS 303
|
Length = 363 |
| >gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1 | Back alignment and domain information |
|---|
Score = 408 bits (1051), Expect = e-139
Identities = 168/305 (55%), Positives = 230/305 (75%), Gaps = 3/305 (0%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK +L KLE +R +EL+ LL+ EV ++ K +E+S L IV+ Y Y++ E
Sbjct: 1 MKPSLLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQE 60
Query: 61 DIITAKEML--NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAG 118
DI AKE+L +D EMR A +E+ +++I ++E ++K L+LPKD ND++N+ +EIRAG
Sbjct: 61 DIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAG 120
Query: 119 TGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
TGGDE+A+F DL RMY R++E WK EI+S + +E+GGYKE+IA I G VYS+LKFE
Sbjct: 121 TGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKFE 180
Query: 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238
SGVHRVQRVP TE+QGRIHTSA TVAV+PE +E+E ++INPADLRIDT+R+SGAGGQH+N
Sbjct: 181 SGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVE-VDINPADLRIDTFRSSGAGGQHVN 239
Query: 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLI 298
TDSAVRITH+PTGIVV+CQ++RSQHKNK A+K+L AR+ +++ +QQ+ A R+ +
Sbjct: 240 TTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQV 299
Query: 299 GSVQK 303
GS +
Sbjct: 300 GSGDR 304
|
This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift [Protein synthesis, Translation factors]. Length = 360 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (768), Expect = 2e-98
Identities = 105/260 (40%), Positives = 167/260 (64%), Gaps = 8/260 (3%)
Query: 311 ETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVL 370
+ +LL +V LS +L++N E++L +E+ L+ RR GEP+ YI+G+ EF+GL
Sbjct: 21 DAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDF 80
Query: 371 NITSDVLIPRPETELLVDLIVKKTFEKK-IKLLEMGTGSGAIAIAIAIYSKNKIEIIATD 429
++ VLIPRPETE LV+ ++ K+ +++L++GTGSGAIA+A+A + E+ A D
Sbjct: 81 KVSPGVLIPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPD-AEVTAVD 139
Query: 430 ISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLN 489
IS AL +A++NAK L ++F++ +W+ L + F++IV+NPPYIP+ DIHL
Sbjct: 140 ISPEALAVARRNAKHGLGA---RVEFLQGDWFEPLPGGR--FDLIVSNPPYIPEADIHLL 194
Query: 490 KGDLR-FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG 548
+ ++R EP AL +GL + I++ A +YL G LL+E GY+Q VR LL G
Sbjct: 195 QPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAG 254
Query: 549 FSDIKSWRDLSGIERVTQGK 568
F+D+++ +DL+G +RV G+
Sbjct: 255 FADVETRKDLAGRDRVVLGR 274
|
Length = 275 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 283 bits (727), Expect = 2e-92
Identities = 101/257 (39%), Positives = 162/257 (63%), Gaps = 9/257 (3%)
Query: 311 ETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVL 370
+ +LL +V +L+++ E++L +E+ + L+ RR GEP+AYI+G++EFYGL
Sbjct: 1 DAELLLAHVLGKDRADLLLHPEEELTPEELARFDALLARRAKGEPVAYILGEREFYGLDF 60
Query: 371 NITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDI 430
++ VLIPRPETE LV+ +++ + +++L++GTGSGAIA+A+A + + A DI
Sbjct: 61 KVSPGVLIPRPETEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPD-ARVTAVDI 119
Query: 431 SKFALKIAKKNAKK-KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLN 489
S AL +A+KNA + L ++F++S+W+ L K F++IV+NPPYIP+ DIHL
Sbjct: 120 SPEALAVARKNAARLGLDN----VEFLQSDWFEPLPGGK--FDLIVSNPPYIPEADIHLL 173
Query: 490 KGDLR-FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG 548
++R EP AL +GL + I+ A + L G LL+E GY+Q VR L G
Sbjct: 174 DPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAG 233
Query: 549 FSDIKSWRDLSGIERVT 565
F+D+++ +DL+G +RV
Sbjct: 234 FADVETRKDLAGKDRVV 250
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|234799 PRK00578, prfB, peptide chain release factor 2; Validated | Back alignment and domain information |
|---|
Score = 269 bits (689), Expect = 3e-85
Identities = 116/290 (40%), Positives = 174/290 (60%), Gaps = 7/290 (2%)
Query: 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKE 67
++ +RL+EL+ + N+ + K +E S L ++ ++ +D+ E
Sbjct: 24 DVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLE 83
Query: 68 ML---NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
+ +D E A E+ +K++ +ELE L + D N + I AG GG E+
Sbjct: 84 LAEEEDDEETLAEAEAELKALEKKLAALELER----LLSGEYDANNAILTIHAGAGGTEA 139
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
+ + LLRMY+R++ER+ +K E++ S E G K +I G Y LK E+GVHR+
Sbjct: 140 QDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGVHRL 199
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
R+ ++ GR HTS +V V PE D+ +I INP DLRIDTYR+SGAGGQH+NKTDSAV
Sbjct: 200 VRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAV 259
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMR 294
RITHIPTGIVVQCQN+RSQH+NKA A+K+L A++ + +L ++ + ++
Sbjct: 260 RITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALK 309
|
Length = 367 |
| >gnl|CDD|232785 TIGR00020, prfB, peptide chain release factor 2 | Back alignment and domain information |
|---|
Score = 237 bits (606), Expect = 5e-73
Identities = 120/290 (41%), Positives = 169/290 (58%), Gaps = 7/290 (2%)
Query: 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKE 67
EK RL+EL+ + N+ + ++E S L +++ K ED+ E
Sbjct: 24 DPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLE 83
Query: 68 ML---NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
+ +D E N E+ +K++ ++EL + + D N ++ I+AG GG E+
Sbjct: 84 LAVEEDDEETFNELDAELKALEKKLAELELRT----MLSGEYDANNAYLTIQAGAGGTEA 139
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
+ + L RMY+R++ER +K EII S E G K + I G Y LK E GVHR+
Sbjct: 140 QDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRL 199
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
R+ + GR HTS +V V+PE D+ DI I P DLRIDTYRASGAGGQH+NKTDSAV
Sbjct: 200 VRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAV 259
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMR 294
RITHIPTGIVVQCQNDRSQHKNK A+K+L A++ + ++ ++Q+
Sbjct: 260 RITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKE 309
|
In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a PFAM model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc [Protein synthesis, Translation factors]. Length = 364 |
| >gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 5e-71
Identities = 93/271 (34%), Positives = 152/271 (56%), Gaps = 10/271 (3%)
Query: 302 QKKSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIG 361
+ +LL ++ +L+ + E +L ++E+ L +L++RR GEP+AYI+G
Sbjct: 15 SAAGGTPNLDAELLLLHLLGKPRDQLLAHPEAELSEEELERLRELLERRAEGEPVAYILG 74
Query: 362 KKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN 421
EF GL + VLIPRP+TELLV+ + + ++L++GTGSGAIAIA+A +
Sbjct: 75 SAEFGGLRFKVDEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD 134
Query: 422 KIEIIATDISKFALKIAKKNAKKKLTKYN-IPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480
E+IA DIS AL +A++NA+ + + + ++S+ + L + F++IV+NPPY
Sbjct: 135 -AEVIAVDISPDALALARENAE----RNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPY 186
Query: 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLV 540
IP D L +R+EP+ AL +GL + I+ A L G+L++E G Q V
Sbjct: 187 IPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAV 246
Query: 541 RKLLFKYG-FSDIKSWRDLSGIERVTQGKIS 570
+ L G F +++ +DL G +RV K+
Sbjct: 247 KALFEDTGFFEIVETLKDLFGRDRVVLAKLR 277
|
Length = 280 |
| >gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases | Back alignment and domain information |
|---|
Score = 210 bits (537), Expect = 7e-64
Identities = 98/259 (37%), Positives = 151/259 (58%), Gaps = 8/259 (3%)
Query: 314 ILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNIT 373
+LL + L+ ++L E + +L+ RR+ G P+AY++G KEFYGL +
Sbjct: 29 LLLLHDLGRERDLLLAFLTEELTPDEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVN 88
Query: 374 SDVLIPRPETELLVDLIVKKTFEK--KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDIS 431
VLIPRPETE LV+ + + + +L++GTGSG IA+A+A N E+IA DIS
Sbjct: 89 EHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNA-EVIAVDIS 147
Query: 432 KFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKG 491
AL +A++NA+K + ++FI+SN + L K +IIV+NPPYI + D+
Sbjct: 148 PDALAVAEENAEK--NQLEHRVEFIQSNLFEPLAGQK--IDIIVSNPPYIDEEDLADLPN 203
Query: 492 DLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-SNLVRKLLFKYGFS 550
+RFEP+ AL +GL+ +++I++ A YL NG L+ E G Q +L L K+ +
Sbjct: 204 VVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWY 263
Query: 551 DIKSWRDLSGIERVTQGKI 569
D+++ RDL+G ERV G
Sbjct: 264 DVENGRDLNGKERVVLGFY 282
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain [Protein fate, Protein modification and repair]. Length = 284 |
| >gnl|CDD|224107 COG1186, PrfB, Protein chain release factor B [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 207 bits (530), Expect = 2e-63
Identities = 91/186 (48%), Positives = 119/186 (63%)
Query: 111 IFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLN 170
++ I AG GG E+ + + LLRMY R++ER +K E++ S E G K +I G N
Sbjct: 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGEN 60
Query: 171 VYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRAS 230
Y LK E+GVHR+ R+ ++ GR HTS +V V PE D +I I DLRIDTYRAS
Sbjct: 61 AYGYLKTETGVHRLVRISPFDSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRAS 120
Query: 231 GAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNT 290
GAGGQH+NKTDSAVR+TH+PTGIVV CQN+RSQH NKA A K+L ++ ++
Sbjct: 121 GAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALARKMLKGKLYILAQEKRSQEK 180
Query: 291 AKMRRL 296
+ R L
Sbjct: 181 NRERAL 186
|
Length = 239 |
| >gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 6e-60
Identities = 107/265 (40%), Positives = 170/265 (64%), Gaps = 8/265 (3%)
Query: 304 KSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKK 363
K P N E +LL+Y + + V+L+ +++ + ++L QRR+ GEP+AYI+G +
Sbjct: 161 KLPKN--EARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVR 218
Query: 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKI 423
EFYG + +VLIPRPETE LV+ ++ + E ++ ++GTGSGA+A+ +A+ +
Sbjct: 219 EFYGRRFAVNPNVLIPRPETEHLVEAVLARLPENG-RVWDLGTGSGAVAVTVALERPDAF 277
Query: 424 EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPK 483
+ A+DIS AL+ A+KNA + ++F +W++ + ++IIV+NPPYI
Sbjct: 278 -VRASDISPPALETARKNAADLGAR----VEFAHGSWFDTDMPSEGKWDIIVSNPPYIEN 332
Query: 484 GDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKL 543
GD HL +GDLRFEP ALTD+S+GLS I+ + + A L + G LL+EHG++Q VR +
Sbjct: 333 GDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGV 392
Query: 544 LFKYGFSDIKSWRDLSGIERVTQGK 568
L + GFS +++ DL+G++RVT GK
Sbjct: 393 LAENGFSGVETLPDLAGLDRVTLGK 417
|
Length = 423 |
| >gnl|CDD|235997 PRK07342, PRK07342, peptide chain release factor 2; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (502), Expect = 4e-58
Identities = 95/198 (47%), Positives = 129/198 (65%), Gaps = 5/198 (2%)
Query: 104 DKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEII 163
D ND ++E+ AG GG ES + + LLRMY R++ER K E++ E G K
Sbjct: 86 DANDT---YLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSAT 142
Query: 164 ARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLR 223
+ G N Y LK ESGVHR+ R+ ++ R HTS ++ V P D+ ++++N +D+R
Sbjct: 143 ILVKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVR 202
Query: 224 IDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKL 283
IDTYR+SGAGGQH+N TDSAVRITHIPTGIVVQCQ +RSQHKN+A A +L AR+ + +L
Sbjct: 203 IDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQERSQHKNRAKAWSMLRARLYEEEL 262
Query: 284 --REQQSNTAKMRRLLIG 299
RE+ +N A + IG
Sbjct: 263 KKREEATNAAAASKTDIG 280
|
Length = 339 |
| >gnl|CDD|235520 PRK05589, PRK05589, peptide chain release factor 2; Provisional | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 5e-58
Identities = 104/260 (40%), Positives = 153/260 (58%), Gaps = 6/260 (2%)
Query: 30 NNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML--NDLEMRNFALDEINLAKK 87
N+IK+ + E +L ++ YN+ + EDI EM+ D EM+ + E+ K+
Sbjct: 8 NDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSEEDDEMKKEIISEVKNIKE 67
Query: 88 RIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFE 147
I ++E L + D+ N + + +G GG ++ + LLRMY R++E+ +K E
Sbjct: 68 EIDRFKIET----LLSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVE 123
Query: 148 IISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIP 207
II + G K + +I G Y LK E G+HR+ R+ G+ TS +V V+P
Sbjct: 124 IIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFASVEVLP 183
Query: 208 EADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNK 267
E + +DI I DL+IDTYRA GAGGQH+NKT+SAVRITHIPTGIVVQCQN+RSQH NK
Sbjct: 184 ELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQHSNK 243
Query: 268 AFALKILLARIKDSKLREQQ 287
A+K+L +++ + K R +
Sbjct: 244 ETAMKMLKSKLVELKERAHK 263
|
Length = 325 |
| >gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 3e-55
Identities = 98/236 (41%), Positives = 142/236 (60%), Gaps = 16/236 (6%)
Query: 57 KINEDIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIR 116
+ +D TA ++ DL+ ++++ +R+F ++ D N F++I+
Sbjct: 27 ESEQDEDTALAVIADLDKYQAHVEKLEF--QRMFSGQM------------DGANAFVDIQ 72
Query: 117 AGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLK 176
AG GG E+ + LLRMY+R++E WK E++ S E+ G K RI G Y LK
Sbjct: 73 AGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLK 132
Query: 177 FESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQH 236
E GVHR+ R ++ R HTS +V V PE D+ +I+INPADLR D YR+SGAGGQH
Sbjct: 133 TEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQH 192
Query: 237 INKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAK 292
+NKT+SAVRITHIPT VV CQ RSQH+N+ A+K+L A++ + ++ Q+ N K
Sbjct: 193 VNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEV--QKRNAEK 246
|
Length = 313 |
| >gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional | Back alignment and domain information |
|---|
Score = 169 bits (428), Expect = 1e-47
Identities = 94/214 (43%), Positives = 130/214 (60%), Gaps = 10/214 (4%)
Query: 91 DIELEIKKLI----------LPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSE 140
++E E+K LI L D DK N +E+ G GG ES + + LLRMY R++E
Sbjct: 58 ELESEVKGLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAE 117
Query: 141 RNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSA 200
+ +K E + + G K + I G N Y LK E GVHR+ R+ ++ GR HTS
Sbjct: 118 KRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSF 177
Query: 201 CTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQND 260
+ V+PE ++ +I + DL+IDTYRASGAGGQH+N TDSAVRITH PT VV CQ++
Sbjct: 178 VSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSE 237
Query: 261 RSQHKNKAFALKILLARIKDSKLREQQSNTAKMR 294
RSQ KN+ A+K+L A++ KL EQQ+ ++R
Sbjct: 238 RSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIR 271
|
Length = 326 |
| >gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release factors | Back alignment and domain information |
|---|
Score = 158 bits (403), Expect = 2e-46
Identities = 56/113 (49%), Positives = 73/113 (64%), Gaps = 1/113 (0%)
Query: 67 EMLNDLEMRNFALDEIN-LAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESA 125
E D EMR A +E+ L + ++E +K L+LPKD ND +N +EIRAG GGDE+A
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKLLLLPKDPNDDKNAILEIRAGAGGDEAA 63
Query: 126 LFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
LF DLLRMY+R++ER WK E++ S E+GG KE +I G Y KLKFE
Sbjct: 64 LFAGDLLRMYLRYAERKGWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
Length = 116 |
| >gnl|CDD|217573 pfam03462, PCRF, PCRF domain | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 1e-45
Identities = 51/112 (45%), Positives = 67/112 (59%)
Query: 67 EMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESAL 126
E +D E+R A +E+ +K + ++E E+ L+LP D D +N +EIRAG GG E+ L
Sbjct: 4 EEEDDPELREEAEEELEELEKELEELEKELLNLLLPLDPYDDKNAILEIRAGAGGTEAQL 63
Query: 127 FVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178
F DLLRMY R++ER WK E+I S E GG KE I G Y LKFE
Sbjct: 64 FAEDLLRMYQRYAERKGWKVEVIDYSEGEEGGIKEATLEIEGEGAYGYLKFE 115
|
This domain is found in peptide chain release factors. Length = 115 |
| >gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 8e-40
Identities = 101/287 (35%), Positives = 152/287 (52%), Gaps = 43/287 (14%)
Query: 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLV 369
E ILL++V L+IN +++L++ EI KL++RR+ EPIAYI G KEFY
Sbjct: 26 LEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSRE 85
Query: 370 LNITSDVLIPRPETELLVDLIVKKTFE-------------------------KKIKLLEM 404
+ VLIPR +TE+LVD++ + K + +LE+
Sbjct: 86 FIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILEL 145
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP--IKFIKSNWYN 462
GTGSG IAI++ N +IATDIS A+++AK NA KY + I+ I SNW+
Sbjct: 146 GTGSGCIAISLLCELPNA-NVIATDISLDAIEVAKSNA----IKYEVTDRIQIIHSNWFE 200
Query: 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPIN-----ALTDYSNGLSSIKEIVKN 517
N++ K F+ IV+NPPYI H K ++ E IN AL +GL + I +N
Sbjct: 201 NIEKQK--FDFIVSNPPYIS----HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAEN 254
Query: 518 ASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERV 564
A ++L NG +++E G+ Q V ++ +G++ ++DL G RV
Sbjct: 255 AKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRV 301
|
Length = 506 |
| >gnl|CDD|201249 pfam00472, RF-1, RF-1 domain | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 9e-39
Identities = 48/99 (48%), Positives = 73/99 (73%), Gaps = 1/99 (1%)
Query: 207 PEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKN 266
P +E+E I I +DLRIDT+R+SG GGQ++NKT+SAVR+TH+PTGIVV+CQ +RSQHKN
Sbjct: 1 PLDEEVE-IEIPESDLRIDTFRSSGPGGQNVNKTESAVRLTHLPTGIVVKCQEERSQHKN 59
Query: 267 KAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKS 305
+ AL+ L A++ +++L++++ T R + +K
Sbjct: 60 REKALERLKAKLYEAELQKKREKTKPTRASQVRRGDRKE 98
|
This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis. Length = 114 |
| >gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 69/220 (31%), Positives = 113/220 (51%), Gaps = 26/220 (11%)
Query: 334 KLHKQEINILNKLIQRRILGE-PIAYIIGKKEFYGLVLNITSDVLIPR-PETELLVD--- 388
+L E + +LI+RRI P+AY+ + F GL + VLIPR P EL+ D
Sbjct: 55 RLTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFA 114
Query: 389 -LIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT 447
+ + ++ +L++ TGSG IAIA A E+ A DIS AL +A+ N ++
Sbjct: 115 PWLEPEPVKR---ILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIER--- 167
Query: 448 KYNIP--IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL----RFEPINAL 501
+ + + I+S+ + L K +++IV+NPPY+ D+ DL EP AL
Sbjct: 168 -HGLEDRVTLIQSDLFAALPGRK--YDLIVSNPPYVDAEDM----ADLPAEYHHEPELAL 220
Query: 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR 541
+GL ++ I+ A+ +L +NG+L++E G + L
Sbjct: 221 ASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALEE 260
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 284 |
| >gnl|CDD|213768 TIGR03072, release_prfH, putative peptide chain release factor H | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 53/205 (25%), Positives = 98/205 (47%), Gaps = 15/205 (7%)
Query: 111 IFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLN 170
I +++ + G E L V L R + + E++ + E+ G + + ++ L+
Sbjct: 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPG--TLRSALVSLD 58
Query: 171 -----VYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRID 225
+ ++E + + P R + V + E ++R +
Sbjct: 59 GEAAAALAD-RWEGTLLWICPSPYRPHHRR---KNWFIGVQRFSASEE---ATEDEIRFE 111
Query: 226 TYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLRE 285
T R+SG GGQH+NKT+SAVR TH+ +GI V+ Q++RSQH NK A +L R+ D + +
Sbjct: 112 TLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLATLLLAVRLADLQQEQ 171
Query: 286 QQSNTAKMRRLLIGSVQKKSPLNIF 310
+ A+ RR +++ +P+ +F
Sbjct: 172 AAALRAE-RRTAHHQIERGNPVRVF 195
|
Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon [Protein synthesis, Translation factors]. Length = 200 |
| >gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 36/94 (38%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
Query: 217 INPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLA 276
++R +T R+SG GGQH+NKTDSAVR TH+ +GI V+ Q++RSQH NK A ++
Sbjct: 104 EQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAW 163
Query: 277 RIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIF 310
+++ + EQ + RR+ +++ +P +F
Sbjct: 164 KLEQQQQ-EQSAALKSQRRMFHHQIERGNPRRVF 196
|
Length = 200 |
| >gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 28/219 (12%)
Query: 334 KLHKQEINILNKLIQRRILGE--PIAYIIGKKEFYGLVLNITSDVLIPR-PETELLVD-- 388
+L E + +LI+RRI E P AY+ + F GL + VL+PR P EL+ D
Sbjct: 67 RLTPSEKARILELIERRI-NERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGF 125
Query: 389 --LIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL 446
+ + +L++ TGSG IAIA A + E+ A DIS AL +A+ N +
Sbjct: 126 APWLEDPPVTR---ILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEIN----I 177
Query: 447 TKYNIP--IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL----RFEPINA 500
++ + + I+S+ + L + +++IV+NPPY+ D+ DL R EP A
Sbjct: 178 ERHGLEDRVTLIESDLFAALPGRR--YDLIVSNPPYVDAEDM----ADLPAEYRHEPELA 231
Query: 501 LTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL 539
L +GL ++ I+ A YL ++G+L++E G ++ +L
Sbjct: 232 LAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVHL 270
|
Length = 307 |
| >gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 2e-21
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 13/212 (6%)
Query: 343 LNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKL- 401
L ++ RR+ G P+ +++G EF GL + + V +PR TE LVD + L
Sbjct: 30 LAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLV 89
Query: 402 -LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN-AKKKLTKYNIPIKFIKSN 459
+++ GSGA+ A+A + + IE+ A DI A++ A++N A T + + +
Sbjct: 90 VVDLCCGSGAVGAALAA-ALDGIELHAADIDPAAVRCARRNLADAGGTVH-------EGD 141
Query: 460 WYNNL-QNYKKLFNIIVANPPYIPKGDIHLNKGDLRF-EPINALTDYSNGLSSIKEIVKN 517
Y+ L + +I+ AN PY+P I L + R EP AL ++GL ++ +
Sbjct: 142 LYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAG 201
Query: 518 ASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGF 549
A +L G LL+E Q+ L + + G
Sbjct: 202 APDWLAPGGHLLVETSERQAPLAVEAFARAGL 233
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 251 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-17
Identities = 55/181 (30%), Positives = 91/181 (50%), Gaps = 22/181 (12%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
+V P ++ LL + V K K ++LE+GTGSG +AI A KN +++ DI+ +A
Sbjct: 4 EVYEPAEDSFLLAENAVDK---KGDRVLEVGTGSGIVAIVAA---KNGKKVVGVDINPYA 57
Query: 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR 494
++ AK NAK + N ++ I+S+ + + K F++I+ NPPY+P + L
Sbjct: 58 VECAKCNAKLNNIR-NNGVEVIRSDLFEPFRGDK--FDVILFNPPYLPTEEEEEWDDWLN 114
Query: 495 FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL-----VRKLLFKYGF 549
+ AL+ +G I + +YL G +L+ QS+L V + L K GF
Sbjct: 115 Y----ALSGGKDGREVIDRFLDEVGRYLKPGGRILLL----QSSLTGEDEVLEYLEKLGF 166
Query: 550 S 550
Sbjct: 167 E 167
|
Length = 188 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 8e-11
Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
Query: 383 TELLVDLIVKKTFEKKI--KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
+ LL+ K + K+L++G G G + A+A S +E+ DI+ AL+ A+
Sbjct: 20 SRLLLS-----HLPKPLGGKVLDLGCGYGVLGAALAKRSP-DLEVTMVDINARALESARA 73
Query: 441 NAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINA 500
N + + S+ Y+ ++ F++I++NPP H K
Sbjct: 74 NLAANGLE---NGEVFWSDLYSAVEP--GKFDLIISNPP------FHAGKA--------- 113
Query: 501 LTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530
TDY + + A+++L G L I
Sbjct: 114 -TDYDVA----QRFIAGAARHLKPGGELWI 138
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
| >gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 14/159 (8%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
V P+ +T+LL D + + ++L++ TGSGA+A+A A + + A DIS+ A
Sbjct: 14 GVYRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAA--AAGAGSVTAVDISRRA 71
Query: 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIP-KGDIHLNKGDL 493
++ A+ NA + + + +W ++ F+++V+NPPY+P D ++G
Sbjct: 72 VRSARLNA----LLAGVDVDVRRGDWARAVEFRP--FDVVVSNPPYVPAPPDAPPSRG-- 123
Query: 494 RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532
P A +G + + + A L G LL+
Sbjct: 124 ---PARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159
|
Length = 223 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-08
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 30/147 (20%)
Query: 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK 454
+ IK+L++G G+G + +A E++ DIS+ A++ AK+NAKK Y ++
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKL--GYE-NVE 57
Query: 455 FIKSNWYN--NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIK 512
FI+ + LQ F+++++N E +N L D
Sbjct: 58 FIQGDIEELPQLQLEDNSFDVVISN------------------EVLNHLPD-------PD 92
Query: 513 EIVKNASKYLVKNGLLLIEHGYNQSNL 539
++++ + L G+L++ S L
Sbjct: 93 KVLEEIIRVLKPGGVLIVSDPVLLSEL 119
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 4e-08
Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 29/132 (21%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++L++G G+GA+A+A+A + DIS AL++A+K A L ++ +K +
Sbjct: 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADN---VEVLKGD 55
Query: 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519
+ F++I+++PP + + ++ A
Sbjct: 56 AEELPPEADESFDVIISDPPLHH------------------------LVEDLARFLEEAR 91
Query: 520 KYLVKNGLLLIE 531
+ L G+L++
Sbjct: 92 RLLKPGGVLVLT 103
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-08
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 13/107 (12%)
Query: 379 PRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
P ++ LL + + K +LE+G G+G +AI + I+ TDI+ FA+K
Sbjct: 4 PAEDSLLLEANLREL---KPDDVLEIGAGTGLVAIRL---KGKGKCILTTDINPFAVKEL 57
Query: 439 KKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGD 485
++NAK N+ + + ++ + + + F++I+ NPPY+P D
Sbjct: 58 RENAKLN----NVGLDVVMTDLFKGV---RGKFDVILFNPPYLPLED 97
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 6e-08
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++L+ G GSGA +A A ++ ++ A +A++ + + + +
Sbjct: 3 RVLDPGAGSGAFLLAAARAGP-DARVVGVELDPEAAALARRRLALAGLAPRV--RVVVGD 59
Query: 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL 493
L+ F++++ NPPY P+ + DL
Sbjct: 60 ARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDL 93
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456
KK ++L++G G+GA+ + +A K +I+ +I + A ++A++N L I+ I
Sbjct: 44 KKGRILDLGAGNGALGLLLA-QRTEKAKIVGVEIQEEAAEMAQRNV--ALNPLEERIQVI 100
Query: 457 KSNWYNNLQNYKKL--FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEI 514
+++ F++I+ NPPY +G LN+ LR A+ + L ++++
Sbjct: 101 EAD-IKEFLKALVFASFDLIICNPPYFKQGSR-LNENPLR-----AIARHEITL-DLEDL 152
Query: 515 VKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553
++ A+K L G L H + + +LL Y +
Sbjct: 153 IRAAAKLLKPGGRLAFVHRPERLAEIIELLKSYNLEPKR 191
|
Length = 248 |
| >gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-07
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 28/93 (30%)
Query: 214 DININPADLRIDTYRASGAGGQHINKTDSAV-------------------------RITH 248
+ I +L RASG GGQ++NK +AV RIT
Sbjct: 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRIT- 65
Query: 249 IPTG-IVVQCQNDRSQHKNKAFALKILLARIKD 280
G IV++ Q RSQ +N+ AL+ L+A I++
Sbjct: 66 -KDGVIVIKAQEFRSQERNREDALERLVALIRE 97
|
Length = 138 |
| >gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 34/150 (22%)
Query: 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442
+ LL++ + K +L++G G G + + +A S ++ D++ A++ A+KN
Sbjct: 147 SRLLLETLPPDLGGK---VLDLGCGYGVLGLVLAKKSPQA-KLTLVDVNARAVESARKNL 202
Query: 443 KKKLTKYNIP--IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINA 500
N + SN Y + + F++I++NPP H K
Sbjct: 203 AA-----NGVENTEVWASNLYEPV---EGKFDLIISNPP------FHAGKA--------- 239
Query: 501 LTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530
+S +EI+ A+++L G L I
Sbjct: 240 -VVHSLA----QEIIAAAARHLKPGGELWI 264
|
Length = 300 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-06
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456
++L++G G+G++AI +A + D+S L++A++NAK L I F+
Sbjct: 1 PGARVLDIGCGTGSLAIELA-RLFPGARVTGVDLSPEMLELARENAKLALGP---RITFV 56
Query: 457 KSNWYNNLQNYKKLFNIIVAN 477
+ + + L + F+ +
Sbjct: 57 QGDAPDALDLLEG-FDAVFIG 76
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460
+L++G G+G + A+ + DISK AL++AK+ + K ++F+ ++
Sbjct: 1 ILDLGCGTGRVLRAL--ARAGPSSVTGVDISKEALELAKERLRDK----GPKVRFVVADA 54
Query: 461 YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR 494
+ F++++ + +L+ LR
Sbjct: 55 RDLPFEEGS-FDLVICAGLSLD----YLSPKQLR 83
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445
L+ L+ K K+L++ G+G +A+ +A S E++ DIS+ L++A++ KK
Sbjct: 43 LISLLGIK---PGDKVLDVACGTGDMALLLA-KSVGTGEVVGLDISESMLEVAREKLKK- 97
Query: 446 LTKYNIPIKFIKSN 459
K ++F+ +
Sbjct: 98 --KGVQNVEFVVGD 109
|
Length = 238 |
| >gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020 | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN-NLQ 465
GSG I I A+ N + +DI ++ A+ NA+ + K L
Sbjct: 38 GSGTILIEAALMGANIAPLYGSDIDWRMVQGARINAE----NAGVGDKIEFVQADAAKLP 93
Query: 466 NYKKLFNIIVANPPY 480
+ IV NPPY
Sbjct: 94 LLNGSVDAIVTNPPY 108
|
This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains. Length = 172 |
| >gnl|CDD|234080 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 3e-04
Identities = 41/169 (24%), Positives = 66/169 (39%), Gaps = 30/169 (17%)
Query: 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKI--------EIIATDISKFAL 435
LV+ I K K K+++ G G + IA + +I I DI K L
Sbjct: 18 ANLVNEIGKNDKSTKTKIIDPCCGDGRL-IAALLKKNEEINYFKEVELNIYFADIDKTLL 76
Query: 436 KIAKKN-AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL- 493
K AKK + L + N+ S N+++Y LF+I++ NPPY G + +K +L
Sbjct: 77 KRAKKLLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPY---GRLKPDKKELT 133
Query: 494 RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRK 542
E + + +K L + S+ +RK
Sbjct: 134 NIETLEYEKY--------IDFLKEFDDLLSRV--------LPYSDPIRK 166
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted [DNA metabolism, Restriction/modification]. Length = 524 |
| >gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440
P T L ++ + K + K +L++G GSG +AIA A +++ DI A++ A++
Sbjct: 147 PTTSLCLEALEKLLKKGK-TVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARE 203
Query: 441 NAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477
NA+ + + K + F++IVAN
Sbjct: 204 NARLNGVELLVQAKG----FLLLEVPENGPFDVIVAN 236
|
Length = 300 |
| >gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 394 TFEKKI--KLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYN 450
T K+L++G G+G ++ +A + KI + +D+S AL+ ++ L
Sbjct: 191 TLTPHTKGKVLDVGCGAGVLSAVLA--RHSPKIRLTLSDVSAAALESSRAT----LAANG 244
Query: 451 IPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480
+ + SN +++++ F++I++NPP+
Sbjct: 245 LEGEVFASNVFSDIKGR---FDMIISNPPF 271
|
Length = 342 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
K+L++ G+G +AI +A + ++ ++ D S L++AKK ++ L I+FI+++
Sbjct: 42 KVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPL-----NIEFIQAD 96
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 37/149 (24%), Positives = 68/149 (45%), Gaps = 10/149 (6%)
Query: 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
E+ +V L+++ E +++L+ G AIA K++ +I+A DIS+ +++ +K+
Sbjct: 224 ESSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKH 281
Query: 442 AKK-KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINA 500
AK+ KL+ I+ ++ + + F+ I+ + P G + LR
Sbjct: 282 AKRLKLS----SIEIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKED 337
Query: 501 LTDYSNGLSSIKEIVKNASKYLVKNGLLL 529
S IV A K L K G+LL
Sbjct: 338 FKKLS---EIQLRIVSQAWKLLEKGGILL 363
|
Length = 431 |
| >gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA) | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
+L++G GSG +AIA +++ DI A++ AK+NA+ + + +
Sbjct: 163 TVLDVGCGSGILAIAALKL--GAKKVVGVDIDPVAVRAAKENAELNGVEAQLEV------ 214
Query: 460 WYNNLQNYKKLFNIIVAN 477
Y + +++VAN
Sbjct: 215 -YLPGDLPEGKADVVVAN 231
|
This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294 |
| >gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 26/129 (20%)
Query: 406 TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK-KLTKYNIPIKFIKSN---WY 461
TG ++ A+ E+ + D+SK AL+ A++NA+ L +FI + W
Sbjct: 228 TGGFSVHAALG----GASEVTSVDLSKRALEWARENAELNGLDG--DRHRFIVGDVFKWL 281
Query: 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521
+ + F++I+ +PP + + + +A DY K++ A +
Sbjct: 282 RKAERRGEKFDLIILDPPSFARS---------KKQEFSAQRDY-------KDLNDLALRL 325
Query: 522 LVKNGLLLI 530
L G L+
Sbjct: 326 LAPGGTLVT 334
|
Length = 393 |
| >gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 34/165 (20%), Positives = 66/165 (40%), Gaps = 54/165 (32%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNK---IEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456
+L++G GSG +AIA A K +++A DI A++ A++NA+ N ++
Sbjct: 122 TVLDVGCGSGILAIAAA-----KLGAKKVLAVDIDPQAVEAARENAEL-----N-GVELN 170
Query: 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516
+L+ ++IVAN I A + + E+
Sbjct: 171 VYLPQGDLK-----ADVIVAN--------------------ILA--------NPLLELAP 197
Query: 517 NASKYLVKNGLLL----IEHGYNQSNLVRKLLFKYGFSDIKSWRD 557
+ ++ L G L+ +E Q++ V + + GF+ +
Sbjct: 198 DLARLLKPGGRLILSGILEE---QADEVLEAYEEAGFTLDEVLER 239
|
Length = 250 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 570 | |||
| COG0216 | 363 | PrfA Protein chain release factor A [Translation, | 100.0 | |
| TIGR00019 | 360 | prfA peptide chain release factor 1. This model de | 100.0 | |
| PRK00591 | 359 | prfA peptide chain release factor 1; Validated | 100.0 | |
| TIGR00020 | 364 | prfB peptide chain release factor 2. In many but n | 100.0 | |
| PRK06746 | 326 | peptide chain release factor 2; Provisional | 100.0 | |
| PRK00578 | 367 | prfB peptide chain release factor 2; Validated | 100.0 | |
| PRK05589 | 325 | peptide chain release factor 2; Provisional | 100.0 | |
| PRK07342 | 339 | peptide chain release factor 2; Provisional | 100.0 | |
| PRK08787 | 313 | peptide chain release factor 2; Provisional | 100.0 | |
| KOG2726|consensus | 386 | 100.0 | ||
| COG1186 | 239 | PrfB Protein chain release factor B [Translation, | 100.0 | |
| TIGR03072 | 200 | release_prfH putative peptide chain release factor | 100.0 | |
| PRK08179 | 200 | prfH peptide chain release factor-like protein; Re | 100.0 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 100.0 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 100.0 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 100.0 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 100.0 | |
| KOG2904|consensus | 328 | 100.0 | ||
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 100.0 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 100.0 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 100.0 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 100.0 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 100.0 | |
| PF03462 | 115 | PCRF: PCRF domain; InterPro: IPR005139 This domain | 99.97 | |
| PF00472 | 113 | RF-1: RF-1 domain; InterPro: IPR000352 Peptide cha | 99.96 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.96 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.85 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.84 | |
| PRK09256 | 138 | hypothetical protein; Provisional | 99.83 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.82 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.82 | |
| KOG3191|consensus | 209 | 99.8 | ||
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.78 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.75 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.75 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.74 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.72 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.69 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.68 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.68 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.67 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.65 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.63 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.62 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.61 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.61 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.61 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.6 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.6 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.59 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.59 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.58 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.57 | |
| KOG3429|consensus | 172 | 99.57 | ||
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.56 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.56 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.56 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.56 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.56 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.56 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.54 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.53 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.53 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.52 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.52 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.52 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.52 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.52 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.5 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.5 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.49 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.49 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.49 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.49 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.49 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.48 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.47 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 99.47 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.46 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.45 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.44 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.44 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.43 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.43 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.42 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.42 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.42 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.41 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.41 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.41 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.41 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.4 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.4 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.4 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.39 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.39 | |
| KOG1540|consensus | 296 | 99.38 | ||
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.38 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.38 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.38 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.37 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.36 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.36 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.35 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.35 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.35 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.35 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.34 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.34 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.34 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.34 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 99.33 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.33 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.32 | |
| KOG1271|consensus | 227 | 99.31 | ||
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.31 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.31 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.3 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.3 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.29 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.28 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.28 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.28 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.28 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.27 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.27 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.26 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.26 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.26 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.26 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.25 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.25 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.24 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 99.24 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.23 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.23 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.23 | |
| PLN02476 | 278 | O-methyltransferase | 99.23 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.23 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.22 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.21 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 99.21 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.21 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.21 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.21 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.21 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.2 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.2 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.19 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.19 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.19 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.18 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.17 | |
| KOG3420|consensus | 185 | 99.15 | ||
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.15 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 99.14 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.13 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 99.12 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.12 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.12 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.11 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.11 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.11 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.1 | |
| KOG1270|consensus | 282 | 99.1 | ||
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.09 | |
| PLN02366 | 308 | spermidine synthase | 99.08 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.08 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.07 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.06 | |
| KOG1541|consensus | 270 | 99.05 | ||
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.05 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.05 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.02 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.02 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 99.02 | |
| KOG2187|consensus | 534 | 99.01 | ||
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.99 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.98 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.98 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.98 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.96 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.96 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.94 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.93 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.91 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 98.9 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.89 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.88 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.87 | |
| PLN02823 | 336 | spermine synthase | 98.84 | |
| KOG4300|consensus | 252 | 98.83 | ||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.82 | |
| KOG2899|consensus | 288 | 98.77 | ||
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.77 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.77 | |
| KOG2915|consensus | 314 | 98.75 | ||
| KOG2361|consensus | 264 | 98.73 | ||
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.65 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.65 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.64 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.62 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.61 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.6 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 98.6 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.58 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.57 | |
| KOG1663|consensus | 237 | 98.57 | ||
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.55 | |
| KOG1499|consensus | 346 | 98.54 | ||
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.54 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.54 | |
| KOG1661|consensus | 237 | 98.53 | ||
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.51 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.45 | |
| KOG2912|consensus | 419 | 98.42 | ||
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 98.42 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.4 | |
| KOG2671|consensus | 421 | 98.4 | ||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.4 | |
| KOG0820|consensus | 315 | 98.4 | ||
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.38 | |
| KOG2730|consensus | 263 | 98.37 | ||
| KOG1975|consensus | 389 | 98.37 | ||
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.37 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.35 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.33 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.32 | |
| KOG3010|consensus | 261 | 98.31 | ||
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.31 | |
| KOG1500|consensus | 517 | 98.28 | ||
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.28 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.26 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.25 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.25 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.2 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.2 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.19 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 98.18 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.16 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.11 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.08 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.06 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.01 | |
| KOG3045|consensus | 325 | 98.01 | ||
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.98 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 97.83 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.82 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.81 | |
| KOG2940|consensus | 325 | 97.8 | ||
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 97.78 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.75 | |
| KOG1122|consensus | 460 | 97.7 | ||
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.63 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.62 | |
| PRK13699 | 227 | putative methylase; Provisional | 97.6 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.6 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.57 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.56 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.52 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.49 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.49 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.46 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 97.46 | |
| KOG4589|consensus | 232 | 97.46 | ||
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.45 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.4 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.33 | |
| KOG3201|consensus | 201 | 97.28 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.28 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.26 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.26 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 97.25 | |
| KOG2198|consensus | 375 | 97.22 | ||
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 97.19 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.17 | |
| KOG1709|consensus | 271 | 97.1 | ||
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.02 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 96.95 | |
| KOG3178|consensus | 342 | 96.95 | ||
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 96.87 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.87 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.82 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.8 | |
| KOG3115|consensus | 249 | 96.71 | ||
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.61 | |
| PRK13699 | 227 | putative methylase; Provisional | 96.47 | |
| KOG3987|consensus | 288 | 96.44 | ||
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.39 | |
| PF07669 | 106 | Eco57I: Eco57I restriction-modification methylase; | 96.33 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 96.33 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 96.32 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.22 | |
| KOG1269|consensus | 364 | 96.07 | ||
| KOG1253|consensus | 525 | 96.03 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.01 | |
| KOG2793|consensus | 248 | 95.99 | ||
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.91 | |
| KOG2798|consensus | 369 | 95.89 | ||
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 95.48 | |
| KOG1331|consensus | 293 | 95.42 | ||
| KOG2078|consensus | 495 | 95.41 | ||
| COG4798 | 238 | Predicted methyltransferase [General function pred | 95.34 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.32 | |
| PHA01634 | 156 | hypothetical protein | 95.31 | |
| KOG4058|consensus | 199 | 95.26 | ||
| KOG2352|consensus | 482 | 95.25 | ||
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.84 | |
| KOG1562|consensus | 337 | 94.83 | ||
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.73 | |
| KOG1596|consensus | 317 | 94.32 | ||
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 94.29 | |
| KOG1501|consensus | 636 | 93.92 | ||
| KOG1099|consensus | 294 | 93.86 | ||
| KOG0822|consensus | 649 | 93.68 | ||
| KOG1227|consensus | 351 | 93.64 | ||
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 93.63 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 92.33 | |
| KOG3350|consensus | 217 | 92.14 | ||
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 91.93 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 91.66 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 90.95 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 89.89 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 89.81 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 89.75 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 89.74 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 89.57 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 89.47 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 88.55 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 87.66 | |
| KOG2352|consensus | 482 | 87.28 | ||
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 86.97 | |
| KOG2651|consensus | 476 | 86.93 | ||
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 86.92 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 86.36 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 86.02 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 85.95 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 84.91 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 84.91 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 84.16 | |
| PF05063 | 176 | MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladen | 83.81 | |
| KOG2360|consensus | 413 | 83.72 | ||
| KOG3924|consensus | 419 | 82.66 | ||
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 82.5 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 82.47 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 81.74 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 80.75 | |
| PRK10884 | 206 | SH3 domain-containing protein; Provisional | 80.4 |
| >COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-102 Score=763.46 Aligned_cols=314 Identities=57% Similarity=0.864 Sum_probs=310.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhC---ChhHHHH
Q psy2395 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLN---DLEMRNF 77 (570)
Q Consensus 1 ~~~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~---D~~~~~~ 77 (570)
|+++|+++|+++..||.+|+.+|++|++.+|++++++++||+++|+++++.|.+|++..++++++++|+. |+||++|
T Consensus 1 ~~~~~~~kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~~~l~~~~D~em~em 80 (363)
T COG0216 1 MKPSLLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREM 80 (363)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999994 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCC
Q psy2395 78 ALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIG 157 (570)
Q Consensus 78 a~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~ 157 (570)
|++|+..++.++..++++|+.+|+|+||+|.+|||||||||+||+||++||.+||+||.+||+.+||++++++.++++.|
T Consensus 81 a~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFagDLfrMY~rYAe~kgWk~ei~s~se~~~G 160 (363)
T COG0216 81 AEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFAGDLFRMYSRYAESKGWKVEILSASESELG 160 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHHHHHHHHHHHHHHhCCCEEEEeecCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCccc
Q psy2395 158 GYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHI 237 (570)
Q Consensus 158 g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~v 237 (570)
|||++++.|+|.+||+.||||+|||||||||.|+++||+|||+|||+|+|++++..++.|+++||+|+||||||+|||||
T Consensus 161 G~kEii~~I~G~gvys~LKfEsGvHRVQRVP~TEsqGRIHTStaTVaVlPE~ee~~ei~I~~~DlrIDt~RsSGaGGQhV 240 (363)
T COG0216 161 GYKEIIASISGKGVYSRLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEVEEVEEIEINPKDLRIDTFRSSGAGGQHV 240 (363)
T ss_pred CceEEEEEEeccchhhhhhhccCccceeccccccCCCceeecceeEEeccCCCcccccccChHHceeeeeecCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999998876799999999999999999999999
Q ss_pred ccccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 238 NKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 238 nk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
|||+|||||||+||||+|.||++||||+||++||+.|++||++++.++++++.++.|++|+|+|+||++|||||||+
T Consensus 241 NtTdSAVRiTHlPTGIvV~cQderSQ~kNk~kAmkvL~ARl~~~~~~~~~~~~~~~RksqVGSGDRSErIRTYNfPQ 317 (363)
T COG0216 241 NTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEASERKSQVGSGDRSERIRTYNFPQ 317 (363)
T ss_pred CccchhheeeecCCceEEEecchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987
|
|
| >TIGR00019 prfA peptide chain release factor 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-86 Score=678.01 Aligned_cols=321 Identities=53% Similarity=0.817 Sum_probs=310.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHH
Q psy2395 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML--NDLEMRNFA 78 (570)
Q Consensus 1 ~~~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~--~D~~~~~~a 78 (570)
|+|+|..+++++.+++.+|++.+++|+||+|++++++++++++.|+++++.|++|.+...+++++.+|+ +|+||+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~~~~~~~~~~~~el~~~~D~e~~~~a 80 (360)
T TIGR00019 1 MKPSLLEKLESLLERYEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMA 80 (360)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999998 499999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCC
Q psy2395 79 LDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGG 158 (570)
Q Consensus 79 ~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g 158 (570)
++|+..+..++++++.+|..+++|++|+|.++|+|||+||+||+||++||++|++||.+||+++||++++++..+++.+|
T Consensus 81 ~~e~~~l~~~~~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g 160 (360)
T TIGR00019 81 KEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAIFAGDLFRMYSRYAESKGWKVEILSANETELGG 160 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccc
Q psy2395 159 YKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238 (570)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vn 238 (570)
+|+|++.|+|++||++|++|+|||||||+|||++++|+||||++|.|+|.+++.. +.|+++||+++|+|||||||||||
T Consensus 161 ~ksa~l~i~G~~ay~~lk~E~GvHrv~Rvp~~~s~~R~hTsfa~V~v~P~~~~~~-~~i~~~dl~~~~~RssG~GGQ~VN 239 (360)
T TIGR00019 161 YKEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEEVE-VDINPADLRIDTFRSSGAGGQHVN 239 (360)
T ss_pred ceEEEEEEecccHHHHHhhcCeeEEEECCCCCCCCCCeecceeEEEEEcCCCccc-cccCcccEEEEEEECCCCCCCCcC
Confidence 9999999999999999999999999999999999999999999999999997754 899999999999999999999999
Q ss_pred cccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh--hh
Q psy2395 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI--LL 316 (570)
Q Consensus 239 k~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~--LL 316 (570)
||+|||||+|+||||+|.||++|||++||+.|+++|+++|++...+++..+....|+.+++.++||++|||||||+ +-
T Consensus 240 kt~SaVrl~h~ptgi~V~~~~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rs~~IRtY~~~~~rV~ 319 (360)
T TIGR00019 240 TTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERIRTYNFPQNRVT 319 (360)
T ss_pred ceeeeEEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceecccCCeEEEECCCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999975 33
Q ss_pred Hhhhcc
Q psy2395 317 KYVTRL 322 (570)
Q Consensus 317 ~~~l~~ 322 (570)
.|.+|.
T Consensus 320 DhRtg~ 325 (360)
T TIGR00019 320 DHRINL 325 (360)
T ss_pred eeccCC
Confidence 444443
|
This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. |
| >PRK00591 prfA peptide chain release factor 1; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-85 Score=668.24 Aligned_cols=312 Identities=56% Similarity=0.868 Sum_probs=305.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHH
Q psy2395 2 KHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFA 78 (570)
Q Consensus 2 ~~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a 78 (570)
.|.|+++++.+.+++.+|++.+++|+||+|+++++++.++++.|+++++.|+++....++++++++|+ +|++|++++
T Consensus 1 ~~~~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~ 80 (359)
T PRK00591 1 KPSMLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMA 80 (359)
T ss_pred CchHHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999998 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCC
Q psy2395 79 LDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGG 158 (570)
Q Consensus 79 ~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g 158 (570)
++|+..+..++++++.+|..+++|++|+|.++|+|||+||+||+||++||++|++||.+||+++||++++++..+++.+|
T Consensus 81 ~~e~~~l~~~l~~~e~~l~~~ll~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g 160 (359)
T PRK00591 81 KEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEILSASEGELGG 160 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCeEEEEECCCChHHHHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccc
Q psy2395 159 YKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238 (570)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vn 238 (570)
+++|++.|+|++||++|++|+|||||||+|+|++++|+||||++|.|+|.+++. ++.|+++||+++|+|||||||||||
T Consensus 161 ~ksa~l~i~G~~ay~~Lk~E~GvHrv~R~p~~~s~~R~~tsfa~V~v~P~~~~~-~~~i~~~dl~~~~~RssG~GGQ~VN 239 (359)
T PRK00591 161 YKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVLPEAEEV-EVEINPKDLRIDTFRSSGAGGQHVN 239 (359)
T ss_pred eeEEEEEEecccHHHHHhhcCeeEEEEeeCCCCCCCceecceEEEEEEcCCCcc-ccccCcccEEEEEEECCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999999999875 4999999999999999999999999
Q ss_pred cccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 239 k~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
||+|||||+|+||||+|.|+++|||++||+.|+++|+++|++.+.+++.++.+..|+.+++.++||++||||||++
T Consensus 240 kt~saVrl~H~ptGi~v~~~~eRSQ~~Nk~~Al~~L~~~L~~~~~~~~~~~~~~~r~~~~~~~~Rse~IRtY~f~~ 315 (359)
T PRK00591 240 TTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRSERIRTYNFPQ 315 (359)
T ss_pred ceeeeEEEEECCCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976
|
|
| >TIGR00020 prfB peptide chain release factor 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-83 Score=658.62 Aligned_cols=312 Identities=39% Similarity=0.528 Sum_probs=294.4
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHH
Q psy2395 7 SKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEIN 83 (570)
Q Consensus 7 ~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~ 83 (570)
-+|+++.+|+.+|+..|++|+||+|++++++++++++.|+++++.|++|.+..+|++++.+|+ +|++|+++|.+|+.
T Consensus 23 ~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~e~~~~a~~e~~ 102 (364)
T TIGR00020 23 LDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDEETFNELDAELK 102 (364)
T ss_pred CCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999998 48999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEE
Q psy2395 84 LAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEII 163 (570)
Q Consensus 84 ~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 163 (570)
.+.+++++++ ...+|++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++.++++.+|+++|+
T Consensus 103 ~l~~~l~~le----~~~ll~~~~D~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~g~ks~~ 178 (364)
T TIGR00020 103 ALEKKLAELE----LRTMLSGEYDANNAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVT 178 (364)
T ss_pred HHHHHHHHHH----HHhccCCCCccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEE
Confidence 9999999998 446688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccce
Q psy2395 164 ARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSA 243 (570)
Q Consensus 164 ~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~ 243 (570)
+.|+|++||++|++|+|||||||+|||+++||+||||++|.|+|.+++..++.|+++||+++++|||||||||||||+||
T Consensus 179 ~~i~G~~ay~~lk~E~GvHrv~rvs~~~~~~rrhts~a~V~vlP~~~~~~~~~i~~~d~~~~~~rssG~GGQ~VNkt~sa 258 (364)
T TIGR00020 179 ILIKGPYAYGYLKSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSA 258 (364)
T ss_pred EEEeccCHHHHHhhccceEEEEecCCCCCCCCeEeeeEEEEEecCCCcccceecccccEEEEEeeCCCCCCccccccceE
Confidence 99999999999999999999999999999999999999999999996544589999999999999999999999999999
Q ss_pred EEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh---hhHhhh
Q psy2395 244 VRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI---LLKYVT 320 (570)
Q Consensus 244 v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~---LL~~~l 320 (570)
|||+|+||||+|.||++|||++||+.|+++|++||++.+.+++.++.+..|+++... +||++||||||++ +-.|..
T Consensus 259 Vri~H~ptgi~v~~q~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~-~rg~~IRtY~~~~~~rVtDhR~ 337 (364)
T TIGR00020 259 VRITHIPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEI-GWGSQIRSYVLHPYSMVKDLRT 337 (364)
T ss_pred EEEEECCCcEEEEECCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CccCCeEEEECCCCCccccccc
Confidence 999999999999999999999999999999999999999999998888888776655 6999999999944 556555
Q ss_pred ccC
Q psy2395 321 RLS 323 (570)
Q Consensus 321 ~~~ 323 (570)
+++
T Consensus 338 g~~ 340 (364)
T TIGR00020 338 GYE 340 (364)
T ss_pred CCe
Confidence 554
|
In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. |
| >PRK06746 peptide chain release factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-83 Score=645.47 Aligned_cols=296 Identities=34% Similarity=0.479 Sum_probs=281.5
Q ss_pred hcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2395 23 LTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINLAKKRIFDIELEIKKL 99 (570)
Q Consensus 23 l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~ 99 (570)
|..|+||+|+++++++.||++.|+++++.|++|.+..+|++++.+|+ +|++|+++|.+|++.+..++++++ ..
T Consensus 1 ~~~~~fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~~d~e~~~~a~~e~~~l~~~l~~le----~~ 76 (326)
T PRK06746 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVKGLIQEMNEYE----LQ 76 (326)
T ss_pred CCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence 56899999999999999999999999999999999999999999998 489999999999999999999998 67
Q ss_pred cCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhhc
Q psy2395 100 ILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFES 179 (570)
Q Consensus 100 ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e~ 179 (570)
++|++|+|.++|+|||+||+||+||++||++|++||++||+++||++++++..+++.+|+|+|++.|+|++||++|++|+
T Consensus 77 ~l~~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~MY~r~a~~~g~~~evi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E~ 156 (326)
T PRK06746 77 LLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEK 156 (326)
T ss_pred hccCCCCccCCeEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEec
Q psy2395 180 GVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQN 259 (570)
Q Consensus 180 G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~ 259 (570)
|||||||+|||+++||+||||++|.|+|.+++..++.|+++||+++|+|||||||||||||+|||||+|+||||+|.||+
T Consensus 157 GvHrv~Rvsp~~s~~rrhTsfa~V~v~P~~~~~~~i~i~~~dl~~~~~rssG~GGQ~vNkt~saVrl~h~ptgi~v~~q~ 236 (326)
T PRK06746 157 GVHRLVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQS 236 (326)
T ss_pred ceEEEEecCCCCCCCCeEeeEEEEEEecCcCCccccccChHHeEEEEEeCCCCCCCCccceeeEEEEEEeCCeEEEEECC
Confidence 99999999999999999999999999999965455999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh---hhHhhhccC
Q psy2395 260 DRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI---LLKYVTRLS 323 (570)
Q Consensus 260 ~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~---LL~~~l~~~ 323 (570)
+|||++||+.|+++|++||++.+.+++.++.+..|+++++. .||++||||||++ +-.|.++.+
T Consensus 237 ~RSQ~~Nk~~A~~~L~akL~~~~~~~~~~~~~~~r~~~~~~-~rg~~IRtYnf~p~~rVtDhR~~~~ 302 (326)
T PRK06746 237 ERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEI-GWGSQIRSYVFHPYSLVKDHRTNTE 302 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-ccCCCeEEEECCCCceeeeeecCce
Confidence 99999999999999999999999999999999999999876 5999999999933 455555544
|
|
| >PRK00578 prfB peptide chain release factor 2; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-83 Score=657.01 Aligned_cols=311 Identities=37% Similarity=0.536 Sum_probs=293.4
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHH
Q psy2395 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINL 84 (570)
Q Consensus 8 ~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~ 84 (570)
+++.+.+|+.+|++.|++|++|+|++++++++++++.|+++++.|++|++..++++++.+|+ +|+||+++|++|+..
T Consensus 24 ~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~el~~~a~~e~~~ 103 (367)
T PRK00578 24 DVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDEETLAEAEAELKA 103 (367)
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999998 489999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEE
Q psy2395 85 AKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIA 164 (570)
Q Consensus 85 ~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 164 (570)
+..+++.++ ..+++++|+|.++|+|||+||+||+||++||++|++||.+||+.+||++++++.++++.+|+++|++
T Consensus 104 l~~~l~~le----~~~ll~~~~D~~~~~leI~aG~GG~Ea~lfa~~L~~mY~~~a~~~g~~~evi~~~~~~~gg~ks~~~ 179 (367)
T PRK00578 104 LEKKLAALE----LERLLSGEYDANNAILTIHAGAGGTEAQDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATF 179 (367)
T ss_pred HHHHHHHHH----HHHhcCCCcccCCeEEEEecCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCCeeEEEE
Confidence 999999998 3355689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceE
Q psy2395 165 RIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244 (570)
Q Consensus 165 ~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v 244 (570)
.|+|++||++|++|+|||||||+|||+++||+||||++|+|+|.+++..++.|+++||+++++|||||||||||||+|||
T Consensus 180 ~i~G~~a~~~lk~E~GvHrvqrvs~~~~~~r~hts~~~V~vlP~~~~~~~~~i~~~dl~~~~~rssGpGGQ~vNkt~saV 259 (367)
T PRK00578 180 KIKGPYAYGYLKSETGVHRLVRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAV 259 (367)
T ss_pred EEeccCHHHHHhhccceEEEEecCCCCCCCceecceeeEEecCCCCCccccccChhhEEEEEeeCCCCCCCcccceeeEE
Confidence 99999999999999999999999999999999999999999999976555899999999999999999999999999999
Q ss_pred EEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh---hhHhhhc
Q psy2395 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI---LLKYVTR 321 (570)
Q Consensus 245 ~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~---LL~~~l~ 321 (570)
||+|+||||+|.||++|||++||+.|+++|+++|++.+.+++.++.+..|+.+ ...+||++||||||++ +-.|..|
T Consensus 260 rl~h~ptgi~v~~~~~RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~-~~~~rg~~IRtYn~~p~~rVtDhR~g 338 (367)
T PRK00578 260 RITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEK-KEIGWGSQIRSYVLHPYQMVKDLRTG 338 (367)
T ss_pred EEEECCCcEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccccccCCeEEEECCCCceeeeeccC
Confidence 99999999999999999999999999999999999999999999999988776 4567999999999933 4555555
Q ss_pred cC
Q psy2395 322 LS 323 (570)
Q Consensus 322 ~~ 323 (570)
++
T Consensus 339 ~~ 340 (367)
T PRK00578 339 YE 340 (367)
T ss_pred ce
Confidence 44
|
|
| >PRK05589 peptide chain release factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-83 Score=640.88 Aligned_cols=295 Identities=36% Similarity=0.543 Sum_probs=277.5
Q ss_pred hcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2395 23 LTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML--NDLEMRNFALDEINLAKKRIFDIELEIKKLI 100 (570)
Q Consensus 23 l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~--~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~l 100 (570)
+++|+||+|+++++++++|++.|+++++.|++|....+|++++.+|+ +|++|+++|.+|+..+++++++++ ..+
T Consensus 1 ~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~~d~e~~~~a~~e~~~l~~~l~~~e----~~~ 76 (325)
T PRK05589 1 MQEPNFWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSEEDDEMKKEIISEVKNIKEEIDRFK----IET 76 (325)
T ss_pred CCCchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH----HHh
Confidence 57999999999999999999999999999999999999999999999 478899999999999999999988 788
Q ss_pred CCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhhcC
Q psy2395 101 LPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180 (570)
Q Consensus 101 l~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e~G 180 (570)
+|++|+|.++|+|||+||+||+||++||++|++||.+||+++||++++++.++++.+|+|+|++.|+|++||++|++|+|
T Consensus 77 l~~~~~D~~~~~leI~aG~GG~Ea~~fa~~L~~mY~~~a~~~g~~~~vi~~~~~~~~g~ks~~~~i~G~~ay~~lk~E~G 156 (325)
T PRK05589 77 LLSGEYDRNNAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKG 156 (325)
T ss_pred cCCCCCcCCCeEEEEECCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEecc
Q psy2395 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQND 260 (570)
Q Consensus 181 ~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~ 260 (570)
||||||+|||+++||+||||++|.|+|.+++..++.|+++||+++|+|||||||||||||+|||||+|+||||+|.||++
T Consensus 157 vHrv~r~s~~~~~~rr~ts~a~V~VlP~~~~~~~~~i~~~dl~~~~~rssG~GGQ~VNkt~saVrl~H~ptgi~v~~q~e 236 (325)
T PRK05589 157 IHRLVRISPFNANGKRQTSFASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 (325)
T ss_pred eEEEEEcCCCCCCCCeEeeeEEEEEecCcCccccccCCchheEEEEeeCCCCCCCcccceeeEEEEEECCCCEEEEECCc
Confidence 99999999999999999999999999999765459999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh---hhHhhhcc
Q psy2395 261 RSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI---LLKYVTRL 322 (570)
Q Consensus 261 rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~---LL~~~l~~ 322 (570)
|||++||+.|+++|++||++.+.++.+++.+..|+.+ ....||++||||||++ +-.+..+.
T Consensus 237 RSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~-~~~~~g~~IRtY~~~p~~rVtDhR~g~ 300 (325)
T PRK05589 237 RSQHSNKETAMKMLKSKLVELKERAHKEKIEDLTGEL-KDMGWGSQIRSYVFHPYNLVKDHRTGV 300 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccccccCCceeeECCCCceeeeeccCc
Confidence 9999999999999999999999999888888888654 3456999999999933 44444444
|
|
| >PRK07342 peptide chain release factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-81 Score=634.47 Aligned_cols=297 Identities=35% Similarity=0.463 Sum_probs=275.4
Q ss_pred HhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2395 22 LLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINLAKKRIFDIELEIKK 98 (570)
Q Consensus 22 ~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~~~~~~~~~~~~l~~ 98 (570)
++++|+||+|+++++++.++++.|+++++.|++|....++++++.+|+ +|++|+++|.+|+..+.++++.++ +
T Consensus 2 ~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~l~el~~~e~D~el~~~a~~e~~~l~~~l~~~e----l 77 (339)
T PRK07342 2 KAEDPSLWNDAQEAQKLMRERQQLDDSINGINHLEQTLNDNIELIAMGEEEGDKSIVEDAEKTIRDLKDEIDRRQ----I 77 (339)
T ss_pred cccCcchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 468999999999999999999999999999999999999999999998 489999999999999999999866 4
Q ss_pred hcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhh
Q psy2395 99 LILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFE 178 (570)
Q Consensus 99 ~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e 178 (570)
..++.+|+|.++|+|||+||+||+||++||++|++||++||+++||++++++.++++.+|+|+|++.|+|++||++|++|
T Consensus 78 ~~lL~~~~D~~~~~leI~aG~GG~Ea~~~a~~Ll~mY~~~a~~~g~~~~vi~~~~~~~~g~ksa~l~i~G~~ay~~lk~E 157 (339)
T PRK07342 78 DALLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTE 157 (339)
T ss_pred HHHhCCccccCCeeEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCCCCceEEEEEEEeccCHHHHHhhc
Confidence 45556999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEe
Q psy2395 179 SGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQ 258 (570)
Q Consensus 179 ~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~ 258 (570)
+|||||||+|||+++||+||||++|.|+|.+++..++.|+++||+++++|||||||||||||+|||||+|+||||+|.||
T Consensus 158 ~GvHrv~rvsp~~~~~rrhTs~a~V~VlP~~~~~~~~~i~~~dl~~~~~RssG~GGQ~VNkt~saVrl~H~ptgi~v~~~ 237 (339)
T PRK07342 158 SGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQ 237 (339)
T ss_pred cceeEEEecCCCCCCCCeEeEEEEEEEEcCCCcccccccCcccEEEEEEECCCCCCCCccceeeeEEEEEcCCcEEEEEC
Confidence 99999999999999999999999999999997654589999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchh-hh--hhHhhhccC
Q psy2395 259 NDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFET-NI--LLKYVTRLS 323 (570)
Q Consensus 259 ~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~-~~--LL~~~l~~~ 323 (570)
++|||++||+.|+++|+++|++.+.+++..+.+..+...... .||++|||||| |. +-.+..+.+
T Consensus 238 ~eRSQ~~Nk~~A~~~L~~~L~~~~~~~~~~~~~~~~~~~~~i-~~g~~IRtY~~~p~~rVtDhRtg~~ 304 (339)
T PRK07342 238 QERSQHKNRAKAWSMLRARLYEEELKKREEATNAAAASKTDI-GWGHQIRSYVLQPYQLVKDLRTGVE 304 (339)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-cccCCcCCccCCCCceeeeeccCce
Confidence 999999999999999999999999999888888766544433 49999999999 42 445545443
|
|
| >PRK08787 peptide chain release factor 2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-77 Score=595.37 Aligned_cols=265 Identities=35% Similarity=0.501 Sum_probs=251.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCc
Q psy2395 45 LYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGG 121 (570)
Q Consensus 45 L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg 121 (570)
|+..++.|+++....+|+.++.+|+ +|++|++++.+|+..+..++++++ ...++++|+|.++|+|||+||+||
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~l~el~~~~~d~e~~~~~~~e~~~l~~~~~~le----~~~lL~~~~D~~~a~leI~aG~GG 77 (313)
T PRK08787 2 LEKTVIGIADVLSGLADAGELLDLAESEQDEDTALAVIADLDKYQAHVEKLE----FQRMFSGQMDGANAFVDIQAGAGG 77 (313)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCccccCCcEEEEECCCCc
Confidence 6789999999999999999999998 489999999999999999999998 456668999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccce
Q psy2395 122 DESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSAC 201 (570)
Q Consensus 122 ~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~ 201 (570)
+||++||++|++||.+||+++||++++++..+++.+|+|+|++.|+|++||++|++|+|||||||+|||+++||+||||+
T Consensus 78 ~Ea~~~a~~LlrMY~r~A~~~g~~~evi~~~~g~~~Giksa~l~I~G~~ayg~lk~E~GvHRv~R~sp~~s~~rrhTsfa 157 (313)
T PRK08787 78 TEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFT 157 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCceeeEEEEEEecccHHHHHhhccCeeEEEecCCCCCCCCEEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHH
Q psy2395 202 TVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDS 281 (570)
Q Consensus 202 ~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~ 281 (570)
+|.|+|.+++..++.|+++||+++|+|||||||||||||+|||||+|+||||+|.||++|||++||+.|+++|+++|++.
T Consensus 158 sV~V~P~~~~~~~i~i~~~dl~~~~~RssG~GGQ~VNkt~saVri~H~Ptgi~v~~q~eRSQ~~Nk~~A~~~L~~~L~~~ 237 (313)
T PRK08787 158 SVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYEL 237 (313)
T ss_pred EEEEecCcCcccccccChhHeEEEEEECCCCCCCCcCCEeeEEEEEECCCcEEEEECCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999765559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 282 KLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 282 ~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
+.+++.++.+..|...... .||++||||||++
T Consensus 238 ~~e~~~~~~~~~~~~k~~i-~~g~qIRtY~f~~ 269 (313)
T PRK08787 238 EVQKRNAEKDALEATKSDI-GWGSQIRNYVLDQ 269 (313)
T ss_pred HHHHHHHHHHHHhhhhhhC-cccccccceeCCC
Confidence 9999998888877544433 4999999999976
|
|
| >KOG2726|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-75 Score=583.57 Aligned_cols=294 Identities=39% Similarity=0.629 Sum_probs=266.9
Q ss_pred HHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHHHHHHHH
Q psy2395 18 ELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINLAKKRIFDIEL 94 (570)
Q Consensus 18 ~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~~~~~~~~~~~ 94 (570)
..+..+.+-++|+|+. +|..++..+.+..++.+++..++.|. +|++|+++|.+|+..+..++....+
T Consensus 52 ~~~~~~~~~~~~~~~~----------~l~~~~~~l~~~~~~~~~~~~lk~l~~~~e~e~~~~~a~~E~~~~~~~i~~~~~ 121 (386)
T KOG2726|consen 52 VQEAASNDSDLWDDPA----------ELDEVLNALSDRMKLVRELKSLKSLIKEGEDEDMDELAEEEAEEISKEIERSLH 121 (386)
T ss_pred hHHHhhchhhhhhhhH----------HHHHHHHHHHHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888998875 24444555555555555554444444 6899999999999999999999999
Q ss_pred HHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhh
Q psy2395 95 EIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSK 174 (570)
Q Consensus 95 ~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~ 174 (570)
+|+.+++|++++|..+|+|||+||+||+||++|+.+|++||.+||+.+||++++++..+++.+|+++|++.|+|.+||++
T Consensus 122 ~l~~~lLp~~~~D~~~~iiev~aGaGG~Ea~ift~el~~MY~~~a~~~~w~~~~l~~~~~~~~Gi~~At~~i~G~~ayg~ 201 (386)
T KOG2726|consen 122 ELELSLLPSDPYDAEACIIEVRAGAGGQEAQIFTMELVDMYQKYAERLGWKARVLEKAPGESGGIKSATLEIEGESAYGY 201 (386)
T ss_pred HHHHHhcCCCcccccCeEEEEeCCCCcHHHHHHHHHHHHHHHHHHHhcccceeehhcCCcccccceeeeeEecccchhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCcceeEEeCCCCCCCcccccceeEEEecCC--CcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCc
Q psy2395 175 LKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEA--DEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG 252 (570)
Q Consensus 175 ~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~--~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~g 252 (570)
|++|.|||||||+|+|++.||+|||+++|.|+|++ ++.. +.|+++||+++++|||||||||||||+|||||+|+|||
T Consensus 202 l~~E~GvHRv~r~p~~e~~gr~htstasV~ViP~~~~~~~~-~~~~~~dl~i~~~R~~G~GGQhvNktdsaVrl~HiPTG 280 (386)
T KOG2726|consen 202 LKFEAGVHRVQRVPSTETSGRRHTSTASVAVIPQPGRDEVD-VEIDEKDLRIETFRASGPGGQHVNKTDSAVRLTHIPTG 280 (386)
T ss_pred eeccCcccceeecCCcccccccccccceEEEeccCCCCccc-eecCchheeEEecccCCCCcccccccccceEEEeecCc
Confidence 99999999999999999999999999999999999 5554 89999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh--hhHhhhcc
Q psy2395 253 IVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI--LLKYVTRL 322 (570)
Q Consensus 253 i~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~--LL~~~l~~ 322 (570)
|+|+||++|||++||+.|+.+|++||+..+..+...+....|+.++++..|+++||||||++ +..+..+.
T Consensus 281 Ivv~cq~eRSq~~Nr~~A~~~L~akL~~~~~~~~~~~~~~~r~~qv~s~~rsekiRTy~~~q~rv~D~r~~~ 352 (386)
T KOG2726|consen 281 IVVECQEERSQHKNRALALKRLRAKLAVIYREEKSEEEKKKRKAQVGSLKRSEKIRTYNFKQDRVTDHRIGL 352 (386)
T ss_pred eEEEeecHHhHHhhHHHHHHHHHHHHHHHHHhhhhHHhhhhhHHhhcccCchhceeecccCccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999965 45544443
|
|
| >COG1186 PrfB Protein chain release factor B [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-65 Score=483.63 Aligned_cols=203 Identities=45% Similarity=0.649 Sum_probs=196.2
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchhhhhhhhcCcceeEEeCCC
Q psy2395 111 IFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKT 190 (570)
Q Consensus 111 ~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~ 190 (570)
|+|+|+||+||+|||+||.||++||++||+++||++|+++..+|+.+|+||++|.|+|++||++|+.|.||||++|+|||
T Consensus 1 ~~l~i~~g~gg~e~~dw~~~l~rmy~r~a~~~g~~~e~l~~~~g~~~g~ks~~~~~~g~~a~g~~~~e~g~hrlvr~Spf 80 (239)
T COG1186 1 AYLTIHAGAGGTEAQDWASMLLRMYTRWAERKGFKVEVLDTSDGEEAGIKSATLKIKGENAYGYLKTETGVHRLVRISPF 80 (239)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHHHHHHHHHcCCeEEEEeccCCcccccceEEEEEechHHHHHHHhhcceeEEEeecCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHHH
Q psy2395 191 ETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFA 270 (570)
Q Consensus 191 ~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a 270 (570)
++.+|+||||++|.++|.+++..++.|+++||+++|+|||||||||||||+|||||||+||||+|.||.+|||++|++.|
T Consensus 81 ~~~~~R~tsf~~v~v~p~~~~~i~i~I~~~dl~idt~RASGaGGQhVNKt~SAVrlth~ptgivv~cq~eRSq~~n~~~a 160 (239)
T COG1186 81 DSNGRRHTSFASVEVFPELDISIEIEIPDDDLRIDTYRASGAGGQHVNKTDSAVRLTHLPTGIVVLCQNERSQHLNKALA 160 (239)
T ss_pred CcCcccccceeeeeecCCCCcccceecCccceEEEEEEcCCCCCCccccccccEEEEEcCCCCEecCHHHHHHHHHHHHH
Confidence 99999999999999999998666799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 271 LKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 271 ~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
+..|+.+|+..+.+++.++....+..+... .|++++|+|.+++
T Consensus 161 ~~~l~~kL~~~~~~~Rsqe~n~~~a~~k~i-~wg~qirsyv~~p 203 (239)
T COG1186 161 RKMLKGKLYILAQEKRSQEKNRERALKKLI-GWGNQIRSYVLDP 203 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHhccccCCCc
Confidence 999999999999999999999888877665 5999999999874
|
|
| >TIGR03072 release_prfH putative peptide chain release factor H | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-62 Score=460.78 Aligned_cols=198 Identities=25% Similarity=0.368 Sum_probs=185.3
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCC-CCceEEEEEEeccchhhhhhhhcCcceeEEeCC
Q psy2395 111 IFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEI-GGYKEIIARIIGLNVYSKLKFESGVHRVQRVPK 189 (570)
Q Consensus 111 ~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~ 189 (570)
++|||+||+||+||++||++||+||.+||+.+||++++++.++++. +|+++|++.|+|++||++|+.|.|+|+|+|.||
T Consensus 1 ~~leI~aG~GG~Ea~lfa~~L~~my~~~a~~~g~~~eii~~~~~~~~gg~ksa~~~i~G~~ay~~l~~~~G~h~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccceEEEEEcCC
Confidence 4899999999999999999999999999999999999999999987 569999999999999999999999999999999
Q ss_pred CCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHH
Q psy2395 190 TETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 190 ~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~ 269 (570)
+++.+++||||++|.|+|.. +.|+++||+++|+|||||||||||||+|||||+|+||||+|+||++|||++||+.
T Consensus 81 ~r~~~~R~ts~~~V~v~~~~-----~~i~~~dl~~~~~RssGpGGQ~vNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~ 155 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSAS-----EEATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRL 155 (200)
T ss_pred CCCCCCeeEEEEEEEEecCc-----cccChhheEEEEEECCCCCcccccccceeEEEEECCCcEEEEECCccCHHHHHHH
Confidence 99999999999999999842 6799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 270 ALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 270 a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
|+++|+++|++.+.++.+ +....|+.++...+||++||||+++.
T Consensus 156 A~~~L~~~l~~~~~~~~~-~~~~~~r~~~~~~~Rg~~iRty~~~~ 199 (200)
T TIGR03072 156 ATLLLAVRLADLQQEQAA-ALRAERRTAHHQIERGNPVRVFKGEL 199 (200)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhccccccccCceEeeeCCc
Confidence 999999999999888765 44555555666778999999999863
|
Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon. |
| >PRK08179 prfH peptide chain release factor-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=456.64 Aligned_cols=196 Identities=22% Similarity=0.345 Sum_probs=183.6
Q ss_pred eEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCC-CCceEEEEEEeccchhhhhhhhcCcceeEEeCC
Q psy2395 111 IFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEI-GGYKEIIARIIGLNVYSKLKFESGVHRVQRVPK 189 (570)
Q Consensus 111 ~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~ 189 (570)
++|||+||+||+||++||++|++||.+||+.+||++++++.++++. +|+|+|++.|+|++||++|+.|.|+|||++.||
T Consensus 2 ~~leI~aG~Gg~Ea~~fa~~L~~my~~~a~~~g~~~~ii~~~~~~~~gg~ksa~~~i~G~~a~~~l~~~~G~~~~V~~sp 81 (200)
T PRK08179 2 ILLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVLETETGRYPDTLRSALVSLDGDNAEALAESWCGTIQWICPSP 81 (200)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCceEEEEEEEEccCHHHHhhcccCeeEEEecCC
Confidence 7999999999999999999999999999999999999999999998 569999999999999999999999999999999
Q ss_pred CCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHH
Q psy2395 190 TETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 190 ~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~ 269 (570)
+++.+++||||++|.|+|.. +.|+++||+++|+|||||||||||||+|||||+|+||||+|.||++|||++||+.
T Consensus 82 ~~~~~~R~~s~~~V~v~~~~-----~~i~~~dl~~~~~RssGpGGQ~VNkt~saVrl~h~ptgi~v~~~~~RSQ~~Nk~~ 156 (200)
T PRK08179 82 YRPHHGRKNWFVGIGRFSAD-----EEEQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRL 156 (200)
T ss_pred CCCCCCceEEEEEEEEeCCc-----CccCHHHeEEEEEEccCCcccccccccceEEEEEcCCcEEEEECCCCCHHHHHHH
Confidence 99999999999999999764 6899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchh
Q psy2395 270 ALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFET 312 (570)
Q Consensus 270 a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~ 312 (570)
|+++|+++|++.+.++...+ ...++.++...+||++||||..
T Consensus 157 A~~~L~~~L~~~~~~~~~~~-~~~~~~~~~~~~Rg~~IRt~~~ 198 (200)
T PRK08179 157 ARLLIAWKLEQQQQEQSAAL-KSQRRMFHHQIERGNPRRVFTG 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhccccccccCceEeeec
Confidence 99999999999988777655 4455555667789999999963
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=358.21 Aligned_cols=254 Identities=41% Similarity=0.717 Sum_probs=232.8
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDL 389 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~ 389 (570)
.+..+++++++++++.+++.+.+.+++.++.+++.+++.||..|+|+|||+|.++|++.+|.++|++|+|||+|+.+++.
T Consensus 165 ~dA~~LL~~~l~~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeTE~LVe~ 244 (423)
T PRK14966 165 NEARMLLQYASEYTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEA 244 (423)
T ss_pred HHHHHHHHHHHCcCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 390 ~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
++.... ++.+|||+|||||++++.+++..+ +.+|+|+|+|+.|++.|++|+..+ +.+++++++|+++......+
T Consensus 245 aL~~l~-~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~l~~~~ 318 (423)
T PRK14966 245 VLARLP-ENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTDMPSEG 318 (423)
T ss_pred hhhccC-CCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccccccCC
Confidence 987543 456999999999999999998765 689999999999999999999863 45799999999764321235
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGF 549 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf 549 (570)
+||+|+|||||++..+.....++++|||+.||+++.+|+++++.+++.+.++|+|||+++++++..|.+.+.+++.+.||
T Consensus 319 ~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~Q~e~V~~ll~~~Gf 398 (423)
T PRK14966 319 KWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENGF 398 (423)
T ss_pred CccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECccHHHHHHHHHHHCCC
Confidence 79999999999988776667777889999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCceEEEEEe
Q psy2395 550 SDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 550 ~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+++++|++|++|++++++
T Consensus 399 ~~v~v~kDl~G~dR~v~~~~ 418 (423)
T PRK14966 399 SGVETLPDLAGLDRVTLGKY 418 (423)
T ss_pred cEEEEEEcCCCCcEEEEEEE
Confidence 99999999999999999986
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=340.87 Aligned_cols=255 Identities=38% Similarity=0.587 Sum_probs=231.0
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDL 389 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~ 389 (570)
....+|+++++++++..++.+...+++.++.+++..++.+|..|+|++||+|.++|+++.|.+++++|+|||+|+.+++.
T Consensus 25 ~~a~~ll~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~pl~yi~g~~~f~g~~f~v~~~vliPr~ete~lv~~ 104 (284)
T TIGR00536 25 LEALLLLLHDLGRERDLLLAFLTEELTPDEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEK 104 (284)
T ss_pred HHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcceEcCeEEEECCCCcCCCCccHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-CCC-CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC
Q psy2395 390 IVKKTF-EKK-IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY 467 (570)
Q Consensus 390 ~~~~~~-~~~-~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~ 467 (570)
++.... ..+ .+|||+|||||++++.++...+ +.+|+|+|+|+.+++.|++|+..++ ...++.|+++|+++.++.
T Consensus 105 ~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~--~~~~v~~~~~d~~~~~~~- 180 (284)
T TIGR00536 105 ALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQ--LEHRVEFIQSNLFEPLAG- 180 (284)
T ss_pred HHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhccCcC-
Confidence 876542 222 6999999999999999998875 5799999999999999999998753 233599999999875532
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHH-H
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLF-K 546 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~-~ 546 (570)
.+||+|++||||++..+....+.+..|||+.||++|.+|+++++.++..+.++|+|||++++++++.+.+.+.+++. .
T Consensus 181 -~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~ 259 (284)
T TIGR00536 181 -QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIK 259 (284)
T ss_pred -CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHhc
Confidence 48999999999999887666667778999999999999999999999999999999999999999999999999998 4
Q ss_pred CCCeeEEEEecCCCCceEEEEEe
Q psy2395 547 YGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.||..+.+++|++|++|++++++
T Consensus 260 ~~~~~~~~~~D~~g~~R~~~~~~ 282 (284)
T TIGR00536 260 FTWYDVENGRDLNGKERVVLGFY 282 (284)
T ss_pred CCCceeEEecCCCCCceEEEEEe
Confidence 78999999999999999999986
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=335.23 Aligned_cols=252 Identities=37% Similarity=0.611 Sum_probs=228.6
Q ss_pred hhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHH
Q psy2395 312 TNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIV 391 (570)
Q Consensus 312 ~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~ 391 (570)
...++...++.++..+..+....++.++..++.+++.+|..+.|++||+|.++|+++.|.+++++++|||+|+.+++.++
T Consensus 25 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~~vliPr~dTe~Lve~~l 104 (280)
T COG2890 25 AELLLLHLLGKPRDQLLAHPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDEGVLIPRPDTELLVEAAL 104 (280)
T ss_pred HHHHHHHHhCCCHHHHhhccccccCHHHHHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCCCceecCCchHHHHHHHH
Confidence 35677778888999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred hhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 392 KKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 392 ~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
........+|||+|||||++++.+++.++ .++|+|+|+|+.|++.|++|+..++. .++.++.+|+++.+. ++|
T Consensus 105 ~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l---~~~~~~~~dlf~~~~---~~f 177 (280)
T COG2890 105 ALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL---VRVLVVQSDLFEPLR---GKF 177 (280)
T ss_pred HhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC---ccEEEEeeecccccC---Cce
Confidence 33222222799999999999999999986 58999999999999999999998642 567788889988765 489
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCC-Ce
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG-FS 550 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~G-f~ 550 (570)
|+||+||||++.......+.++.|||..|++++.+|+++++.++..+.++|+|||+++++++.++.+.+.+++.+.| |.
T Consensus 178 DlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~~~ 257 (280)
T COG2890 178 DLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDTGFFE 257 (280)
T ss_pred eEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCCce
Confidence 99999999999886667788889999999999999999999999999999999999999999999999999999999 88
Q ss_pred eEEEEecCCCCceEEEEEeC
Q psy2395 551 DIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 551 ~i~~~~D~~g~~R~~~~~~~ 570 (570)
.+.+.+|++|.+|++.+++.
T Consensus 258 ~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 258 IVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred EEEEEecCCCceEEEEEEec
Confidence 89999999999999999874
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=362.44 Aligned_cols=254 Identities=38% Similarity=0.605 Sum_probs=228.6
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDL 389 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~ 389 (570)
....+|+++++++++..++.+.+.+++.++.+.+.++++||..|+|+|||+|.++|||++|.|+|+||||||+|+.|+++
T Consensus 26 ~~a~~Ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~~VLIPRpeTE~Lve~ 105 (506)
T PRK01544 26 LEARILLQHVINKPIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDV 105 (506)
T ss_pred HHHHHHHHHHHCcCHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCCCcccCCCcHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-------------------------CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 390 IVKKTF-------------------------EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 390 ~~~~~~-------------------------~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
++.... .++.+|||+|||||++++.++...+ +++|+|+|+|+.+++.|++|+..
T Consensus 106 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~ 184 (506)
T PRK01544 106 VFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIK 184 (506)
T ss_pred HHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHH
Confidence 876431 1246899999999999999998765 58999999999999999999987
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcc-cCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIH-LNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~-~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
++ ...++.++++|+++.++ .++||+|++||||++..... ....+..|||..||+++.+|+++|+.+++.+.++|+
T Consensus 185 ~~--l~~~v~~~~~D~~~~~~--~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~ 260 (506)
T PRK01544 185 YE--VTDRIQIIHSNWFENIE--KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK 260 (506)
T ss_pred cC--CccceeeeecchhhhCc--CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc
Confidence 53 23469999999876553 36899999999999887654 344566799999999999999999999999999999
Q ss_pred cCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 524 KNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 524 pgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
|||+++++++..+.+.+.+++.+.||..+.+++|++|++|++++.
T Consensus 261 ~gG~l~lEig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~ 305 (506)
T PRK01544 261 PNGKIILEIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILIS 305 (506)
T ss_pred CCCEEEEEECCchHHHHHHHHHhcCCCceEEEecCCCCceEEEec
Confidence 999999999999999999999999999999999999999999864
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=288.78 Aligned_cols=256 Identities=26% Similarity=0.318 Sum_probs=212.4
Q ss_pred chhhhhhHhhhccCcceeeec--hhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIIN--NEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLV 387 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~ 387 (570)
.+++.+.+++++.. -+.+.. -+.||...+++.++.++.+|.++.|+|||+|.++|.++.+.+.|+||||||+|+.++
T Consensus 56 ~~~~~i~shvL~~K-f~si~ds~~~~pl~~~ql~~i~~~~~~R~~r~PlQYIlg~~~F~~l~l~~~pgVlIPRpETEE~V 134 (328)
T KOG2904|consen 56 LSYKWIVSHVLPDK-FWSIEDSIVDDPLVILQLESIRWACLQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWV 134 (328)
T ss_pred hhhHHHHHhhhhhh-hccccchhhccccchhHHHHHHHHHHHHHhcCChhheeccCccCCceEEecCCeeecCccHHHHH
Confidence 45566777776655 222221 256788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCC----CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE----Ecc
Q psy2395 388 DLIVKKTFE----KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI----KSN 459 (570)
Q Consensus 388 ~~~~~~~~~----~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~----~~D 459 (570)
+++++.... ++..+||+|||||++++.++...+ .++|+|||.|+.|+.+|.+|++++. ...++.++ .+|
T Consensus 135 ~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~--l~g~i~v~~~~me~d 211 (328)
T KOG2904|consen 135 EAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLK--LSGRIEVIHNIMESD 211 (328)
T ss_pred HHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHh--hcCceEEEecccccc
Confidence 999886542 456899999999999999999887 6899999999999999999999874 33456655 667
Q ss_pred cccccccCCCceeEEEECCCCCCCCCccc-CCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc--CCC
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHL-NKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG--YNQ 536 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~-~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~--~~~ 536 (570)
++...+...+++|+++|||||++.++... .+++..|||.+||+||.+|++++..++.-+.++|+|||.++++.. ...
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~~~~ 291 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVERKEH 291 (328)
T ss_pred cccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecccccC
Confidence 76655555689999999999999888664 455567999999999999999999999999999999999999887 445
Q ss_pred HHHHHHHHHH---CCCeeEEEEecCCCCceEEEEEe
Q psy2395 537 SNLVRKLLFK---YGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 537 ~~~l~~ll~~---~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
...+..++.. .-+..+.++.|..|.+||++...
T Consensus 292 ~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~r 327 (328)
T KOG2904|consen 292 SYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIHR 327 (328)
T ss_pred cHHHHHHHHhchhhccchhheeecccCCcceEEEEe
Confidence 5555555543 23566889999999999999865
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=304.26 Aligned_cols=237 Identities=29% Similarity=0.370 Sum_probs=210.1
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHh-cCCCceeecCcccccCeeeeecCCccccchhHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRI-LGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVD 388 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~-~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~ 388 (570)
....+|+++++++++..++.+...+++.++.+.+.+++.||. .++|++||+|.++|+++.|.+++++|+|+|+++.++.
T Consensus 31 ~~a~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~f~g~~f~v~~~vlipr~~te~lv~ 110 (284)
T TIGR03533 31 DEAVYLVLHALHLPLDILEPFLDARLTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIE 110 (284)
T ss_pred HHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHhCCCcHHHHcCCCeecCcEEEECCCCccCCCchHHHHH
Confidence 367889999999999999999999999999999999999998 6899999999999999999999999999999999888
Q ss_pred HHHhh-c-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc
Q psy2395 389 LIVKK-T-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN 466 (570)
Q Consensus 389 ~~~~~-~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~ 466 (570)
..+.. . ..++.+|||+|||+|++++.+++..+ +.+|+|+|+|+.+++.|++|+..++ ...++.++++|+++.++
T Consensus 111 ~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~--~~~~i~~~~~D~~~~~~- 186 (284)
T TIGR03533 111 DGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHG--LEDRVTLIQSDLFAALP- 186 (284)
T ss_pred HHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhccC-
Confidence 87653 3 23457999999999999999998875 5799999999999999999998753 23469999999977553
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK 546 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~ 546 (570)
..+||+|++||||++.........++.|||..|++++.+|+++++.++..+.++|+|||+++++++..+ +.+.+++.+
T Consensus 187 -~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~ 264 (284)
T TIGR03533 187 -GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPD 264 (284)
T ss_pred -CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHh
Confidence 358999999999998876655555668999999999999999999999999999999999999999866 689999999
Q ss_pred CCCeeE
Q psy2395 547 YGFSDI 552 (570)
Q Consensus 547 ~Gf~~i 552 (570)
+||...
T Consensus 265 ~~~~~~ 270 (284)
T TIGR03533 265 VPFTWL 270 (284)
T ss_pred CCCcee
Confidence 998754
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=301.20 Aligned_cols=253 Identities=40% Similarity=0.726 Sum_probs=227.4
Q ss_pred hhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHH
Q psy2395 311 ETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLI 390 (570)
Q Consensus 311 ~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~ 390 (570)
....+++++++.++..+..+...+++.++.+++.+++.+|..+.|++|++|..+||+..|.+++++|+|+|+|+.+++.+
T Consensus 21 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~~~~lipr~~te~l~~~~ 100 (275)
T PRK09328 21 DAELLLAHVLGLSRTDLLLNPEEELTPEELERFRALVARRAAGEPLQYILGEAEFWGLDFKVSPGVLIPRPETEELVEWA 100 (275)
T ss_pred HHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceeceEcCcEEEECCCceeCCCCcHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 391 VKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 391 ~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
..... .++.+|||+|||+|.+++.++...+ ..+|+|+|+|+.+++.|++|+... ...++.++++|+++... .+
T Consensus 101 ~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~~~--~~ 174 (275)
T PRK09328 101 LEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEPLP--GG 174 (275)
T ss_pred HHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCcCC--CC
Confidence 75432 4567999999999999999998875 589999999999999999999721 34579999999976543 36
Q ss_pred ceeEEEECCCCCCCCCcccCCCCc-cccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDL-RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG 548 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~-~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~G 548 (570)
+||+|++||||++..........+ .|+|..+++++.+|++++..+++.+.++|+|||+++++++..+.+.+.+++.+.|
T Consensus 175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~g 254 (275)
T PRK09328 175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAG 254 (275)
T ss_pred ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECchHHHHHHHHHHhCC
Confidence 899999999999877665444444 5999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEecCCCCceEEEEEe
Q psy2395 549 FSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 549 f~~i~~~~D~~g~~R~~~~~~ 569 (570)
|..+.+++|+.|.+|++++++
T Consensus 255 f~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 255 FADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred CceeEEecCCCCCceEEEEEC
Confidence 999999999999999999875
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=304.49 Aligned_cols=249 Identities=27% Similarity=0.343 Sum_probs=214.0
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHh-cCCCceeecCcccccCeeeeecCCccccchhHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRI-LGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVD 388 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~-~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~ 388 (570)
+...+|+++++++++..++.+...+++.++.+++.+++.||. .|+|++||+|.++|+++.|.+++++|+|+|+++.++.
T Consensus 43 ~~a~~ll~~~l~~~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~~~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~ 122 (307)
T PRK11805 43 DEAVQLVLHALHLPLDIPEPFLDARLTPSEKARILELIERRINERIPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIE 122 (307)
T ss_pred HHHHHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHHCCccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHH
Confidence 467889999999999999999999999999999999999998 6999999999999999999999999999999998888
Q ss_pred HHHhh-cCCC-CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc
Q psy2395 389 LIVKK-TFEK-KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN 466 (570)
Q Consensus 389 ~~~~~-~~~~-~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~ 466 (570)
.++.. .... +.+|||+|||+|++++.++...+ +.+|+|+|+|+.+++.|++|+..++ ...+++++++|+++.++
T Consensus 123 ~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~~l~- 198 (307)
T PRK11805 123 DGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHG--LEDRVTLIESDLFAALP- 198 (307)
T ss_pred HHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC--CCCcEEEEECchhhhCC-
Confidence 77653 2222 36899999999999999998875 5899999999999999999998753 23469999999977554
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK 546 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~ 546 (570)
.++||+|++||||++......+..++.|||..|++++.+|+++++.+++.+.++|+|||+++++++..+. .+.+++..
T Consensus 199 -~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~-~~~~~~~~ 276 (307)
T PRK11805 199 -GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRV-HLEEAYPD 276 (307)
T ss_pred -CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCHH-HHHHHHhh
Confidence 3589999999999988766555556679999999999999999999999999999999999999998765 58888988
Q ss_pred CCCeeEEEEecCCCCceEEE
Q psy2395 547 YGFSDIKSWRDLSGIERVTQ 566 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~~R~~~ 566 (570)
.||....+.. .+...+++
T Consensus 277 ~~~~~~~~~~--~~~~~~~~ 294 (307)
T PRK11805 277 VPFTWLEFEN--GGDGVFLL 294 (307)
T ss_pred CCCEEEEecC--CCceEEEE
Confidence 8887655533 34444443
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=274.94 Aligned_cols=219 Identities=28% Similarity=0.452 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcCC--CCCEEEEECCcccHHHHHHHH
Q psy2395 340 INILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFE--KKIKLLEMGTGSGAIAIAIAI 417 (570)
Q Consensus 340 ~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~--~~~~VLDlGcGtG~i~l~la~ 417 (570)
...+..+++||..++|+|||+|.++|++++|.++|++|+|+++|+.+++.++..... .+.+|||+|||+|.+++.+++
T Consensus 27 ~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~ 106 (251)
T TIGR03704 27 PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAA 106 (251)
T ss_pred HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCCCcCCCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999998875432 245899999999999999998
Q ss_pred hcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCC-CCccc
Q psy2395 418 YSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNK-GDLRF 495 (570)
Q Consensus 418 ~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~-~~~~~ 495 (570)
..+ +.+|+|+|+|+.+++.|++|+..+ + ++++++|+++.++. ..++||+|++||||++........ .+..|
T Consensus 107 ~~~-~~~v~~vDis~~al~~A~~N~~~~----~--~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ 179 (251)
T TIGR03704 107 ALD-GIELHAADIDPAAVRCARRNLADA----G--GTVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDH 179 (251)
T ss_pred hCC-CCEEEEEECCHHHHHHHHHHHHHc----C--CEEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhC
Confidence 765 579999999999999999999864 2 47899999765432 125799999999999877655433 44469
Q ss_pred cccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCee-EEEEecCCCCceEEEE
Q psy2395 496 EPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSD-IKSWRDLSGIERVTQG 567 (570)
Q Consensus 496 ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~-i~~~~D~~g~~R~~~~ 567 (570)
+|..++++|.+|++.++.++..+.++|+|||+++++++..+...+..++.++||.. +...+|+ ..-+++|
T Consensus 180 ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~~~~v~~~l~~~g~~~~~~~~~~~--~~~~~~~ 250 (251)
T TIGR03704 180 EPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQAPLAVEAFARAGLIARVASSEEL--YATVVIG 250 (251)
T ss_pred CCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHHCCCCceeeEcccc--cceeeec
Confidence 99999999999999999999999999999999999999999999999999999875 5556676 4445554
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=271.25 Aligned_cols=248 Identities=40% Similarity=0.672 Sum_probs=221.6
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
.+++++++++++..++.+....++.++.+.+..++.++..+.|++|++|..+|++..|.+++++++|+++++.+++.++.
T Consensus 3 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~l~ 82 (251)
T TIGR03534 3 ELLLAHVLGKDRTDLLLHPEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVEAALE 82 (251)
T ss_pred HHHHHHHHCcCHHHHhhcccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHHHHHHHHH
Confidence 46888899999888888888889999999999999999999999999999999999999999999999999999999887
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.....+.+|||+|||+|.++..++...+ ..+++|+|+|+.+++.|++|+..++. .++.++++|+.+..+ .++||
T Consensus 83 ~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~~~~--~~~fD 156 (251)
T TIGR03534 83 RLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGL---DNVTFLQSDWFEPLP--GGKFD 156 (251)
T ss_pred hcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCC---CeEEEEECchhccCc--CCcee
Confidence 7655567999999999999999998875 57999999999999999999986421 259999999977543 37899
Q ss_pred EEEECCCCCCCCCcccCCCC-ccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCee
Q psy2395 473 IIVANPPYIPKGDIHLNKGD-LRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~-~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~ 551 (570)
+|++||||+........... ..|+|..+++++.+|+..+..+++.+.++|+|||+++++++..+.+.+.+++.++||..
T Consensus 157 ~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~~~~l~~~gf~~ 236 (251)
T TIGR03534 157 LIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAVRALFEAAGFAD 236 (251)
T ss_pred EEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHHHHHHHhCCCCc
Confidence 99999999987765544444 45899999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCceEEE
Q psy2395 552 IKSWRDLSGIERVTQ 566 (570)
Q Consensus 552 i~~~~D~~g~~R~~~ 566 (570)
+.+++|+.|.+|+++
T Consensus 237 v~~~~d~~~~~r~~~ 251 (251)
T TIGR03534 237 VETRKDLAGKDRVVL 251 (251)
T ss_pred eEEEeCCCCCcCeeC
Confidence 999999999999974
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PF03462 PCRF: PCRF domain; InterPro: IPR005139 This domain is found in peptide chain release factors | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=229.04 Aligned_cols=109 Identities=43% Similarity=0.714 Sum_probs=103.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEE
Q psy2395 70 NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEII 149 (570)
Q Consensus 70 ~D~~~~~~a~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~ 149 (570)
+|+||++++.+|+..+..+++.++.++...++|++++|.++|+|||+||+||+||++||++|++||++||+++||+++++
T Consensus 7 ~D~e~~~~~~~e~~~~~~~l~~l~~~l~~~ll~~~~~d~~~~ileI~aG~GG~EA~lfa~~L~~MY~~~a~~~gw~~~~l 86 (115)
T PF03462_consen 7 EDEEMRELAEEEIEQLEEELEELEKELLDSLLPSDPYDANNAILEIRAGAGGDEACLFAEELFRMYQRYAERRGWKVEVL 86 (115)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHSSTTTSEEEEEEEE-SSTHHHHHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCeEEEEecCCCchHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccCCCCceEEEEEEeccchhhhhhhh
Q psy2395 150 SRSLSEIGGYKEIIARIIGLNVYSKLKFE 178 (570)
Q Consensus 150 ~~~~~~~~g~~~~~~~~~g~~~~~~~~~e 178 (570)
+.++++.+|+|+|++.|+|++||++||+|
T Consensus 87 ~~~~~~~~G~k~a~~~I~G~~aY~~Lk~E 115 (115)
T PF03462_consen 87 DYSPGEEGGIKSATLEISGEGAYGYLKFE 115 (115)
T ss_dssp EEEE-SSSSEEEEEEEEESTTHHHHHGGG
T ss_pred ecCCCCccceeEEEEEEEcCChHHhccCC
Confidence 99999999999999999999999999998
|
Peptide chain release factors are important for protein synthesis since they direct the termination of translation in response to the peptide chain termination codons UAG and UAA. These are structurally distinct but both contain the PCRF domain [].; GO: 0016149 translation release factor activity, codon specific, 0006415 translational termination, 0005737 cytoplasm; PDB: 3D5A_X 3D5C_X 3MR8_V 3MS0_V 3F1G_X 3F1E_X 1ZBT_A 2IHR_1 2X9R_Y 2X9T_Y .... |
| >PF00472 RF-1: RF-1 domain; InterPro: IPR000352 Peptide chain release factors (RFs) are required for the termination of protein biosynthesis [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=220.41 Aligned_cols=100 Identities=38% Similarity=0.658 Sum_probs=93.3
Q ss_pred ccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy2395 214 DININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKM 293 (570)
Q Consensus 214 ~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~ 293 (570)
++.|+++||+++|+|||||||||||||+|+|+|+|+||||+|+|+++|||++||+.|+++|.++|..+..++........
T Consensus 6 ~~~i~~~dl~~~~~RssGpGGQ~VNk~~s~V~l~h~ptgi~v~~~~~Rsq~~Nr~~A~~~L~~~l~~~~~~~~~~~~~~~ 85 (113)
T PF00472_consen 6 EIDIPEKDLEISFSRSSGPGGQNVNKTNSKVRLRHIPTGIVVKCQESRSQHQNREDALEKLREKLDEAYREKRREKTREI 85 (113)
T ss_dssp SSCC-GGGEEEEEEESSSSSSCHHHSSSEEEEEEETTTTEEEEEESSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred ccccCHHHeEEEEEecCCCCCCcccccCCEEEEEEecccEEEEEcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999877777777788
Q ss_pred HHhhhcccccCCCCccchhh
Q psy2395 294 RRLLIGSVQKKSPLNIFETN 313 (570)
Q Consensus 294 r~~~~~~~~~~~~iR~y~~~ 313 (570)
++++....++++++|+|+++
T Consensus 86 ~~~~~~~~~~~~~iR~y~~~ 105 (113)
T PF00472_consen 86 RKSQVKRLERKKKIRTYNFP 105 (113)
T ss_dssp TTTSCCCSSTTSEEEEEETT
T ss_pred HHHHHhHHhhhcceecccCC
Confidence 88888878899999999984
|
At present two classes of RFs can be distinguished. Class I RFs bind to ribosomes that have encountered a stop codon at their decoding site and induce release of the nascent polypeptide. Class II RFs are GTP-binding proteins that interact with class I RFs and enhance class I RF activity. In prokaryotes there are two class I RFs that act in a codon specific manner []: RF-1 (gene prfA) mediates UAA and UAG-dependent termination while RF-2 (gene prfB) mediates UAA and UGA-dependent termination. RF-1 and RF-2 are structurally and evolutionary related proteins which have been shown to be part of a larger family [].; GO: 0003747 translation release factor activity, 0006415 translational termination; PDB: 2JY9_A 1ZBT_A 1GQE_A 3F1G_X 3F1E_X 1RQ0_C 4DH9_Y 2JVA_A 1J26_A 3D5A_X .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=278.72 Aligned_cols=196 Identities=20% Similarity=0.213 Sum_probs=166.4
Q ss_pred cCcccccCeeeeecCCccccchhHHHHHHHHHhhcCC---CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHH
Q psy2395 360 IGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFE---KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436 (570)
Q Consensus 360 ~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~---~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~ 436 (570)
.|.++||++.|.+.|++|+|||+|+.+++. +...+. ++.+|||+|||||++++.+++.++ ..+|+|+|+|+.|++
T Consensus 79 ~G~~~F~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~ 156 (1082)
T PLN02672 79 EGFRNRKKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVK 156 (1082)
T ss_pred CCeEEecCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHH
Confidence 488999999999999999999999999998 443221 246899999999999999999876 479999999999999
Q ss_pred HHHHHHHhhccc-------------CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCc-cccc-----
Q psy2395 437 IAKKNAKKKLTK-------------YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL-RFEP----- 497 (570)
Q Consensus 437 ~A~~n~~~~~~~-------------~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~-~~ep----- 497 (570)
.|++|+..|+.. ...+++|+++|+++.+.....+||+||+||||++.++...+.+++ .|||
T Consensus 157 ~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 157 VAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HHHHHHHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 999999976321 113699999999876643223799999999999988876555555 3664
Q ss_pred ----cccccc---cCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHH-HHHHHCCCeeEEEEec
Q psy2395 498 ----INALTD---YSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR-KLLFKYGFSDIKSWRD 557 (570)
Q Consensus 498 ----~~al~~---~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~-~ll~~~Gf~~i~~~~D 557 (570)
..||++ +.+|+++|++++..+.++|+|||++++++|..|++.+. +++.+.||..+.+|+.
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~gf~~~~~~~~ 304 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRGFRITKLWQT 304 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCCCCeeEEeee
Confidence 789987 48999999999999999999999999999999999999 6999999999888864
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-20 Score=175.21 Aligned_cols=140 Identities=29% Similarity=0.512 Sum_probs=114.2
Q ss_pred eeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 368 LVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 368 ~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
++|...|++|.|. +.|+.|++.+... ++.+|||+|||+|.+++.+++.++ ..+|+++|+|+.+++.|++|+..
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~---~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH---KGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH---TTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc---cCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHh
Confidence 4678899999855 5788888888664 567999999999999999999886 57899999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
|+. . +++++.+|+++..+ ..+||+|++|||+.. +..+|...++++++.+.++|+|
T Consensus 78 n~~--~-~v~~~~~d~~~~~~--~~~fD~Iv~NPP~~~--------------------~~~~~~~~~~~~i~~a~~~Lk~ 132 (170)
T PF05175_consen 78 NGL--E-NVEVVQSDLFEALP--DGKFDLIVSNPPFHA--------------------GGDDGLDLLRDFIEQARRYLKP 132 (170)
T ss_dssp TTC--T-TEEEEESSTTTTCC--TTCEEEEEE---SBT--------------------TSHCHHHHHHHHHHHHHHHEEE
T ss_pred cCc--c-cccccccccccccc--ccceeEEEEccchhc--------------------ccccchhhHHHHHHHHHHhccC
Confidence 632 1 29999999988665 479999999999653 2234677889999999999999
Q ss_pred CeEEEEEEcCCC
Q psy2395 525 NGLLLIEHGYNQ 536 (570)
Q Consensus 525 gG~l~~~~~~~~ 536 (570)
||.++++.....
T Consensus 133 ~G~l~lv~~~~~ 144 (170)
T PF05175_consen 133 GGRLFLVINSHL 144 (170)
T ss_dssp EEEEEEEEETTS
T ss_pred CCEEEEEeecCC
Confidence 999988776544
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.1e-20 Score=179.72 Aligned_cols=177 Identities=24% Similarity=0.338 Sum_probs=143.1
Q ss_pred ccCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 365 FYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
+-+..+.+.+++|.|..+++.+.+.+......++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++|+..
T Consensus 4 ~~~~~~~~~~g~~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~ 81 (223)
T PRK14967 4 TPPDALLRAPGVYRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALL 81 (223)
T ss_pred CCCceeecCCCCcCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 3467788899999999999999888765444567899999999999999998753 35899999999999999999986
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
+ +.++.++++|+.+.++ .++||+|++||||++..... ...+.|..++.++.+|...+..+++.+.++|+|
T Consensus 82 ~----~~~~~~~~~d~~~~~~--~~~fD~Vi~npPy~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 82 A----GVDVDVRRGDWARAVE--FRPFDVVVSNPPYVPAPPDA----PPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred h----CCeeEEEECchhhhcc--CCCeeEEEECCCCCCCCccc----ccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC
Confidence 4 4468899999976443 36899999999998764321 123456667777888888899999999999999
Q ss_pred CeEEEEEEcC-CCHHHHHHHHHHCCCeeEE
Q psy2395 525 NGLLLIEHGY-NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 525 gG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~ 553 (570)
||.+++..+. .+...+.+.+++.||....
T Consensus 152 gG~l~~~~~~~~~~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 152 GGSLLLVQSELSGVERTLTRLSEAGLDAEV 181 (223)
T ss_pred CcEEEEEEecccCHHHHHHHHHHCCCCeEE
Confidence 9999987655 4677888889999986543
|
|
| >PRK09256 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.8e-21 Score=170.16 Aligned_cols=69 Identities=39% Similarity=0.580 Sum_probs=64.6
Q ss_pred cccCCCCeEEEEeeccCCCCcccccccceEEEEe------cC-----------------Cc-eEEEEeccccHHHHHHHH
Q psy2395 215 ININPADLRIDTYRASGAGGQHINKTDSAVRITH------IP-----------------TG-IVVQCQNDRSQHKNKAFA 270 (570)
Q Consensus 215 ~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h------~p-----------------~g-i~~~~~~~rsq~~n~~~a 270 (570)
+.|+.++|++.|+|||||||||||||+|+|+|+| +| +| |+|.|+++|||++|++.|
T Consensus 8 ~~i~~~~l~~~~~RSSGPGGQ~VNKt~SkV~l~~~~~~~~lp~~~~~~l~~~~~~r~~~~g~l~i~~~~~RSQ~~Nr~~a 87 (138)
T PRK09256 8 LVIPENELEWRFIRASGPGGQNVNKVSTAVELRFDIAASSLPEFYKERLLALAGHRITKDGVIVIKAQEFRSQERNREDA 87 (138)
T ss_pred CccCHHHeEEEEEEcCCCCcccccccceeeEEEechhhccCCHHHHHHHHHHhcCcccCCCcEEEEECCcCCHHHHHHHH
Confidence 7899999999999999999999999999999995 77 35 999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2395 271 LKILLARIKDSKL 283 (570)
Q Consensus 271 ~~~l~~~l~~~~~ 283 (570)
+++|.++|.++..
T Consensus 88 l~kL~~~i~~~~~ 100 (138)
T PRK09256 88 LERLVALIREALK 100 (138)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999997664
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-19 Score=166.66 Aligned_cols=165 Identities=24% Similarity=0.294 Sum_probs=128.9
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
+|+|++++..+.+.+.. .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++|+..+ +.++++
T Consensus 1 ~~~~~~d~~~l~~~l~~---~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~ 70 (179)
T TIGR00537 1 VYEPAEDSLLLEANLRE---LKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLN----NVGLDV 70 (179)
T ss_pred CCCCCccHHHHHHHHHh---cCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHc----CCceEE
Confidence 57899999777666532 245789999999999999999765 38999999999999999999863 456899
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
+.+|+.+.. .++||+|++||||++.+...... .....++.++.+|...+..++..+.++|+|||.+++..+..
T Consensus 71 ~~~d~~~~~---~~~fD~Vi~n~p~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 71 VMTDLFKGV---RGKFDVILFNPPYLPLEDDLRRG----DWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred EEccccccc---CCcccEEEECCCCCCCcchhccc----chhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 999987643 25899999999998664321111 11133555667777888999999999999999998876554
Q ss_pred -CHHHHHHHHHHCCCeeEEEEec
Q psy2395 536 -QSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 536 -~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
+...+.+.+.+.||....+..-
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~ 166 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAER 166 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEe
Confidence 4888999999999987655543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=175.25 Aligned_cols=175 Identities=22% Similarity=0.346 Sum_probs=136.4
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
....+..++.+|-+.-++-+|..++.. ....+|||+|||+|.+++.+|.+.+ .++|+|||+++++.+.|++|...|
T Consensus 16 ~~~~I~q~~~~~~~~~DaiLL~~~~~~---~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln 91 (248)
T COG4123 16 KQFFIIQDRCGFRYGTDAILLAAFAPV---PKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALN 91 (248)
T ss_pred cceEEEeCCCccccccHHHHHHhhccc---ccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhC
Confidence 345566678888888888888777632 3478999999999999999998865 489999999999999999999976
Q ss_pred cccCCCCEEEEEcccccccccCC-CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNYK-KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~~-~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
. ...+++++++|+.+...... .+||+|+|||||+...... . -.|..+...+.. ...+..+++.+.++|||
T Consensus 92 ~--l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~-~-----~~~~~~~Ar~e~-~~~le~~i~~a~~~lk~ 162 (248)
T COG4123 92 P--LEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRL-N-----ENPLRAIARHEI-TLDLEDLIRAAAKLLKP 162 (248)
T ss_pred c--chhceeEehhhHHHhhhcccccccCEEEeCCCCCCCcccc-C-----cChhhhhhhhhh-cCCHHHHHHHHHHHccC
Confidence 3 56689999999976554333 4699999999999876541 1 112222222211 12468999999999999
Q ss_pred CeEEEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 525 NGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 525 gG~l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
||.++++++.....++..++++.+|...+
T Consensus 163 ~G~l~~V~r~erl~ei~~~l~~~~~~~k~ 191 (248)
T COG4123 163 GGRLAFVHRPERLAEIIELLKSYNLEPKR 191 (248)
T ss_pred CCEEEEEecHHHHHHHHHHHHhcCCCceE
Confidence 99999999999999999999998887644
|
|
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=158.39 Aligned_cols=185 Identities=24% Similarity=0.344 Sum_probs=153.5
Q ss_pred CccccchhHHHHHHHHHhhcC----CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 375 DVLIPRPETELLVDLIVKKTF----EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~----~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
++|-|..+|..|++.+..... ..+..++|||||||.++..|++...++....++||||.|++.+++.++.| +
T Consensus 17 dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~ 92 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----R 92 (209)
T ss_pred hccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----C
Confidence 789999999999998865421 24678999999999999999987666788999999999999999999974 5
Q ss_pred CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
..+..++.|+...+.. ++.|+++.||||.+.+....-. ..-..++.||.+|.+...+++..+...|.|.|++++
T Consensus 93 ~~~~~V~tdl~~~l~~--~~VDvLvfNPPYVpt~~~~i~~----~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Yl 166 (209)
T KOG3191|consen 93 VHIDVVRTDLLSGLRN--ESVDVLVFNPPYVPTSDEEIGD----EGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYL 166 (209)
T ss_pred CccceeehhHHhhhcc--CCccEEEECCCcCcCCcccchh----HHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEe
Confidence 6689999999988875 8999999999999987542211 111357789999999999999999999999999988
Q ss_pred EE-cCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 531 EH-GYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 531 ~~-~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.. ..+..+++.++++..||.....+....|.+-..+-++
T Consensus 167 v~~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf 206 (209)
T KOG3191|consen 167 VALRANKPKEILKILEKKGYGVRIAMQRKAGGETLSILKF 206 (209)
T ss_pred eehhhcCHHHHHHHHhhcccceeEEEEEecCCceEEEEEE
Confidence 54 5577888999999999998888888888776665543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=158.11 Aligned_cols=182 Identities=26% Similarity=0.370 Sum_probs=141.1
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
++++|+|++++..+++.+.. .++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.+++|+..++.. +..
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~---~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~-~~~ 74 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD---KKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIR-NNG 74 (188)
T ss_pred CCcccCcchhHHHHHHhhhc---cCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCC-Ccc
Confidence 57899999999988887753 45679999999999999999976 379999999999999999999865321 112
Q ss_pred EEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 453 IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 453 v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+.++.+|+.+.+.. .+||+|++||||.+....... .-....++.++.++...+..+++.+.++|+|||.+++.+
T Consensus 75 ~~~~~~d~~~~~~~--~~~d~vi~n~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 75 VEVIRSDLFEPFRG--DKFDVILFNPPYLPTEEEEEW----DDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred eEEEeccccccccc--cCceEEEECCCcCCCCchhhh----hhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 88999998775542 489999999999864321111 001123455666677788999999999999999998877
Q ss_pred cC-CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEE
Q psy2395 533 GY-NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQG 567 (570)
Q Consensus 533 ~~-~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~ 567 (570)
+. ...+.+.+++.++||..+.+.......+++.+.
T Consensus 149 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 184 (188)
T PRK14968 149 SSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVL 184 (188)
T ss_pred cccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEE
Confidence 65 456789999999999988887777777766654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.6e-17 Score=170.06 Aligned_cols=141 Identities=16% Similarity=0.285 Sum_probs=109.7
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
++.+...++||... ..|+.+++.+.. ..+.+|||+|||+|.+++.+++.+| ..+|+++|+|+.|++.|++|+.
T Consensus 198 ~~~~~~~~gVFs~~~LD~GtrllL~~lp~---~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~ 273 (378)
T PRK15001 198 DWTIHNHANVFSRTGLDIGARFFMQHLPE---NLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVE 273 (378)
T ss_pred eEEEEecCCccCCCCcChHHHHHHHhCCc---ccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 56777789999876 457777766532 2346999999999999999999876 6899999999999999999998
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.|+.....+++++.+|+++... ..+||+|+|||||+..... ......+++..+.++|+
T Consensus 274 ~n~~~~~~~v~~~~~D~l~~~~--~~~fDlIlsNPPfh~~~~~--------------------~~~ia~~l~~~a~~~Lk 331 (378)
T PRK15001 274 TNMPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHAL--------------------TDNVAWEMFHHARRCLK 331 (378)
T ss_pred HcCcccCceEEEEEccccccCC--CCCEEEEEECcCcccCccC--------------------CHHHHHHHHHHHHHhcc
Confidence 7632112368999999876553 2589999999999843210 11244689999999999
Q ss_pred cCeEEEEEEc
Q psy2395 524 KNGLLLIEHG 533 (570)
Q Consensus 524 pgG~l~~~~~ 533 (570)
|||.++++..
T Consensus 332 pGG~L~iV~n 341 (378)
T PRK15001 332 INGELYIVAN 341 (378)
T ss_pred cCCEEEEEEe
Confidence 9999999863
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-17 Score=165.55 Aligned_cols=200 Identities=16% Similarity=0.185 Sum_probs=139.9
Q ss_pred ccCee-eeecCCccccc-hhHHHHHHHHHhhcC---------CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHH
Q psy2395 365 FYGLV-LNITSDVLIPR-PETELLVDLIVKKTF---------EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKF 433 (570)
Q Consensus 365 f~~~~-~~v~~~~~~pr-~~t~~l~~~~~~~~~---------~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~ 433 (570)
+||+. +.++++.++|. |..-..+.++.+.+. .++.++||||||+|++...++...+ +++++|+|||+.
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~ 149 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQ 149 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHH
Confidence 45666 36889999988 655556666555431 1457999999999999998887655 689999999999
Q ss_pred HHHHHHHHHHhh-cccCCCCEEEEE-c---ccccccccCCCceeEEEECCCCCCCCCcccCC------CCccccc-c--c
Q psy2395 434 ALKIAKKNAKKK-LTKYNIPIKFIK-S---NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNK------GDLRFEP-I--N 499 (570)
Q Consensus 434 al~~A~~n~~~~-~~~~~~~v~~~~-~---D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~------~~~~~ep-~--~ 499 (570)
+++.|++|+..| + ...++.++. . +++..+....++||+|+|||||+......... ...++.+ . +
T Consensus 150 Al~~A~~Nv~~Np~--l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l 227 (321)
T PRK11727 150 ALASAQAIISANPG--LNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVL 227 (321)
T ss_pred HHHHHHHHHHhccC--CcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCcccc
Confidence 999999999986 3 234677754 3 33333322246899999999999876542111 0011111 0 1
Q ss_pred -------cc--cccCCChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 500 -------AL--TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 500 -------al--~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.+ .||+ ..++..+++++..+++..|++...++ ......+.+.|++.|...+.+..-.+|...-.+--|
T Consensus 228 ~f~g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~vaW 305 (321)
T PRK11727 228 NFGGQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRFIAW 305 (321)
T ss_pred CCcchhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCCCeeeEEEEe
Confidence 11 1222 57889999999999999999877665 478899999999999988888877777653333334
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-17 Score=160.41 Aligned_cols=137 Identities=23% Similarity=0.341 Sum_probs=108.7
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
+++|.-.|+||.-. .-|+.|++.+.. ..+.+|||+|||.|.+++.+++..| ..+++.+|+|..|++.|++|+.
T Consensus 128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~---~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 128 ELTFKTLPGVFSRDKLDKGSRLLLETLPP---DLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred ceEEEeCCCCCcCCCcChHHHHHHHhCCc---cCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHH
Confidence 56677789999655 467777776633 2345999999999999999999987 6899999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.|+. .+..++.+|..+... ++||+|||||||+.... -....-.+++..+.++|+
T Consensus 204 ~N~~---~~~~v~~s~~~~~v~---~kfd~IisNPPfh~G~~--------------------v~~~~~~~~i~~A~~~L~ 257 (300)
T COG2813 204 ANGV---ENTEVWASNLYEPVE---GKFDLIISNPPFHAGKA--------------------VVHSLAQEIIAAAARHLK 257 (300)
T ss_pred HcCC---CccEEEEeccccccc---ccccEEEeCCCccCCcc--------------------hhHHHHHHHHHHHHHhhc
Confidence 8632 123788899877665 48999999999984321 112334699999999999
Q ss_pred cCeEEEEEEc
Q psy2395 524 KNGLLLIEHG 533 (570)
Q Consensus 524 pgG~l~~~~~ 533 (570)
+||.|+++..
T Consensus 258 ~gGeL~iVan 267 (300)
T COG2813 258 PGGELWIVAN 267 (300)
T ss_pred cCCEEEEEEc
Confidence 9999999775
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.3e-17 Score=176.28 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=147.5
Q ss_pred CcceeeechhhhchHHHHHHHHHHHHHHhcCCCcee----ecCcccccCeeeeecCCccccchhHHHHHHHHHhhcCCCC
Q psy2395 323 SDVELIINNEKKLHKQEINILNKLIQRRILGEPIAY----IIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKK 398 (570)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~----i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~ 398 (570)
..-.++.+...+++.++.+.+..++.+ ++| |+|+..||+..|.+.+++. +++.+++.+. ..++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~---~~~~ 267 (475)
T PLN02336 201 KNQNQICWLWQKVSSTNDKGFQRFLDN------VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD---LKPG 267 (475)
T ss_pred CCcceEEEEEEeecCCcchhHHHHhhh------hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC---CCCC
Confidence 344578888899998888888888876 788 9999999999999998877 6777777653 3467
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|||+|||+|.+++.++... +++|+|+|+|+.+++.|++|+.. ...+++|.++|+.+. +.++++||+|+++-
T Consensus 268 ~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~----~~~~v~~~~~d~~~~-~~~~~~fD~I~s~~ 340 (475)
T PLN02336 268 QKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIG----RKCSVEFEVADCTKK-TYPDNSFDVIYSRD 340 (475)
T ss_pred CEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhc----CCCceEEEEcCcccC-CCCCCCEEEEEECC
Confidence 799999999999999999875 47999999999999999998763 345799999998663 32346899999964
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------CCH
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------------NQS 537 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------~~~ 537 (570)
.+.... ....+++++.+.|+|||.+++.... ...
T Consensus 341 ~l~h~~-------------------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 395 (475)
T PLN02336 341 TILHIQ-------------------------DKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDLHDV 395 (475)
T ss_pred cccccC-------------------------CHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCCCCH
Confidence 432211 2368899999999999999875311 124
Q ss_pred HHHHHHHHHCCCeeEEE
Q psy2395 538 NLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 538 ~~l~~ll~~~Gf~~i~~ 554 (570)
..+.+++.++||..+.+
T Consensus 396 ~~~~~~l~~aGF~~i~~ 412 (475)
T PLN02336 396 QAYGQMLKDAGFDDVIA 412 (475)
T ss_pred HHHHHHHHHCCCeeeee
Confidence 56788899999998744
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=165.27 Aligned_cols=198 Identities=14% Similarity=0.209 Sum_probs=141.5
Q ss_pred CcceeeechhhhchHHHHHHHHHHHHHH-------hcCCCceeecCc--------ccccCeeeeecCCccccc--hhHHH
Q psy2395 323 SDVELIINNEKKLHKQEINILNKLIQRR-------ILGEPIAYIIGK--------KEFYGLVLNITSDVLIPR--PETEL 385 (570)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~~~r-------~~~~p~~~i~g~--------~~f~~~~~~v~~~~~~pr--~~t~~ 385 (570)
++..+++.....++..+.+.+.++..++ ..+.|.+++.|. .+|++..|.++|+.|.+. ..++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~ 284 (443)
T PRK13168 205 NGTALVLRHLEPLSEADRAKLRAFAEQHGLQLYLQPKGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQK 284 (443)
T ss_pred CceEEEEEEcCCCChHHHHHHHHHhhcccEEEEEECCCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHH
Confidence 3344444222344444445555554433 136788888885 257899999999999753 56888
Q ss_pred HHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 386 LVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 386 l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
+++.++..+. .++.+|||+|||+|.+++.++... .+|+|+|+|+.|++.|++|+..++. .+++|+++|+.+.+
T Consensus 285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~---~~v~~~~~d~~~~l 358 (443)
T PRK13168 285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL---DNVTFYHANLEEDF 358 (443)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEEeChHHhh
Confidence 9888887654 456799999999999999999764 5899999999999999999987532 25999999997644
Q ss_pred c---cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHH
Q psy2395 465 Q---NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR 541 (570)
Q Consensus 465 ~---~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~ 541 (570)
. ..+.+||+|++||||... ..+++.+.+ ++|++++++.+.+.....-.
T Consensus 359 ~~~~~~~~~fD~Vi~dPPr~g~----------------------------~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl 409 (443)
T PRK13168 359 TDQPWALGGFDKVLLDPPRAGA----------------------------AEVMQALAK-LGPKRIVYVSCNPATLARDA 409 (443)
T ss_pred hhhhhhcCCCCEEEECcCCcCh----------------------------HHHHHHHHh-cCCCeEEEEEeChHHhhccH
Confidence 2 123579999999998621 233343333 69999999988775555445
Q ss_pred HHHHHCCCeeEEEE
Q psy2395 542 KLLFKYGFSDIKSW 555 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~ 555 (570)
..|.+.||+..++.
T Consensus 410 ~~L~~~gY~l~~i~ 423 (443)
T PRK13168 410 GVLVEAGYRLKRAG 423 (443)
T ss_pred HHHhhCCcEEEEEE
Confidence 56667899876544
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=139.54 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=89.4
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv~ 476 (570)
+.+|||+|||+|.+++.+++.+ ..+++|+|++|.+++.|+.|+..++ ...+++++++|+.+... ...++||+|++
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~ 76 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNG--LDDRVEVIVGDARDLPEPLPDGKFDLIVT 76 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCT--TTTTEEEEESHHHHHHHTCTTT-EEEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHcc--CCceEEEEECchhhchhhccCceeEEEEE
Confidence 3589999999999999999887 4799999999999999999998742 33469999999977552 23479999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
||||....... ......+..+++.+.++|+|||.+++.++
T Consensus 77 npP~~~~~~~~-----------------~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 77 NPPYGPRSGDK-----------------AALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp --STTSBTT---------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCccccccc-----------------hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99998542110 01112668999999999999999998775
|
... |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=147.48 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=110.7
Q ss_pred CCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeC
Q psy2395 353 GEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDI 430 (570)
Q Consensus 353 ~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDi 430 (570)
|.+.=+|+|.. |+|..+.+.++.- .||.++.+.+.++..+. .++.+|||+|||||.+++.++..+ ..+|+++|+
T Consensus 9 ~~~~mrIi~g~-~~g~~l~~~~~~~-~Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~ 84 (199)
T PRK10909 9 GSGQIRIIGGQ-WRGRKLPVPDSPG-LRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEM 84 (199)
T ss_pred CCCCEEEEeec-cCCCEeCCCCCCC-cCcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEEC
Confidence 44434677655 8999998866432 38888888777766542 356799999999999999755444 369999999
Q ss_pred CHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHH
Q psy2395 431 SKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSS 510 (570)
Q Consensus 431 s~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~ 510 (570)
++.+++.|++|++.++. .++.++++|+.+.+.....+||+|++||||... .
T Consensus 85 ~~~a~~~a~~Nl~~~~~---~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~~g--------------------------~ 135 (199)
T PRK10909 85 DRAVAQQLIKNLATLKA---GNARVVNTNALSFLAQPGTPHNVVFVDPPFRKG--------------------------L 135 (199)
T ss_pred CHHHHHHHHHHHHHhCC---CcEEEEEchHHHHHhhcCCCceEEEECCCCCCC--------------------------h
Confidence 99999999999987531 269999999977654333579999999999631 2
Q ss_pred HHHHHHHHh--hccccCeEEEEEEcCC
Q psy2395 511 IKEIVKNAS--KYLVKNGLLLIEHGYN 535 (570)
Q Consensus 511 ~~~~l~~~~--~~LkpgG~l~~~~~~~ 535 (570)
+..+++.+. .+|+|+|++++++...
T Consensus 136 ~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 136 LEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred HHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 234444433 3589999999988653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-15 Score=156.71 Aligned_cols=137 Identities=24% Similarity=0.405 Sum_probs=108.7
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
++.+...|++|.+. +.|+.+++.+.. ....+|||+|||+|.+++.+++..+ ..+|+++|+|+.|++.|++|+.
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~~l~~---~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~ 241 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLTP---HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLA 241 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHhccc---cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 56788889999875 456777766532 2345899999999999999998875 5799999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.+ +....++.+|+++.. .++||+|++||||+... .........++..+.++|+
T Consensus 242 ~n----~l~~~~~~~D~~~~~---~~~fDlIvsNPPFH~g~--------------------~~~~~~~~~~i~~a~~~Lk 294 (342)
T PRK09489 242 AN----GLEGEVFASNVFSDI---KGRFDMIISNPPFHDGI--------------------QTSLDAAQTLIRGAVRHLN 294 (342)
T ss_pred Hc----CCCCEEEEccccccc---CCCccEEEECCCccCCc--------------------cccHHHHHHHHHHHHHhcC
Confidence 75 344678888886643 36899999999997421 1123466899999999999
Q ss_pred cCeEEEEEEcC
Q psy2395 524 KNGLLLIEHGY 534 (570)
Q Consensus 524 pgG~l~~~~~~ 534 (570)
|||.++++...
T Consensus 295 pgG~L~iVan~ 305 (342)
T PRK09489 295 SGGELRIVANA 305 (342)
T ss_pred cCCEEEEEEeC
Confidence 99999987654
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=149.92 Aligned_cols=155 Identities=14% Similarity=0.191 Sum_probs=113.8
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
...|+|......++ .. .....+|||+|||+|.+++.++...+ ..+|+|+|+|+.|++.|++|.. ++
T Consensus 46 G~FfTP~~i~~~f~---~~--~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~~--------~v 111 (279)
T PHA03411 46 GAFFTPEGLAWDFT---ID--AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLLP--------EA 111 (279)
T ss_pred eeEcCCHHHHHHHH---hc--cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCc--------CC
Confidence 44566765544332 11 22456999999999999999887653 4699999999999999988742 37
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHH--HHHHHHHHhhccccCeEEEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSS--IKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~--~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.++++|+.+... ..+||+|++||||+...... .....+..|+..|.+. +..++.....+|+|+|.+++.
T Consensus 112 ~~v~~D~~e~~~--~~kFDlIIsNPPF~~l~~~d-------~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 112 EWITSDVFEFES--NEKFDVVISNPPFGKINTTD-------TKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred EEEECchhhhcc--cCCCcEEEEcCCccccCchh-------hhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 899999977543 36899999999998643211 1222345566777766 478999999999999988775
Q ss_pred EcC-------CCHHHHHHHHHHCCCee
Q psy2395 532 HGY-------NQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 532 ~~~-------~~~~~l~~ll~~~Gf~~ 551 (570)
... ....+..+++.++||..
T Consensus 183 yss~~~y~~sl~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 183 YSGRPYYDGTMKSNKYLKWSKQTGLVT 209 (279)
T ss_pred EeccccccccCCHHHHHHHHHhcCcEe
Confidence 533 23678899999999863
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=144.93 Aligned_cols=147 Identities=15% Similarity=0.251 Sum_probs=104.0
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSK--NKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
...|+|......++... ..+.+|||+|||||.+++.+++..+ +..+|+|+|+++.+++.|++|..
T Consensus 31 GqFfTP~~iAr~~~i~~-----~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-------- 97 (241)
T PHA03412 31 GAFFTPIGLARDFTIDA-----CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-------- 97 (241)
T ss_pred CccCCCHHHHHHHHHhc-----cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------
Confidence 44577877666554221 2367999999999999999987642 24689999999999999998864
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccc-cccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL-TDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al-~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
++.++++|+.... .+++||+||+||||++... +. .+..+|..+...++..+.+++++|+. ++
T Consensus 98 ~~~~~~~D~~~~~--~~~~FDlIIsNPPY~~~~~--------------~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-IL 160 (241)
T PHA03412 98 EATWINADALTTE--FDTLFDMAISNPPFGKIKT--------------SDFKGKYTGAEFEYKVIERASQIARQGTF-II 160 (241)
T ss_pred CCEEEEcchhccc--ccCCccEEEECCCCCCccc--------------cccCCcccccHHHHHHHHHHHHHcCCCEE-Ee
Confidence 2789999996532 2468999999999997431 11 12245778889999999996666664 43
Q ss_pred E---EcC-------------CCHHHHHHHHHHCCCe
Q psy2395 531 E---HGY-------------NQSNLVRKLLFKYGFS 550 (570)
Q Consensus 531 ~---~~~-------------~~~~~l~~ll~~~Gf~ 550 (570)
- .+. ..+.+..++.++.|+.
T Consensus 161 P~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (241)
T PHA03412 161 PQMSANFRYSGTHYFRQDESTTSSKCKKFLDETGLE 196 (241)
T ss_pred CcccccCcccCccceeeccCcccHHHHHHHHhcCee
Confidence 1 111 1245667777777653
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=136.35 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=111.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+++.+|||+|||+|.+++.+++..+ +++|+|+|+|+.+++.|++|+..++ . .+++++++|+.+. .. .++||+|+
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~--l-~~i~~~~~d~~~~-~~-~~~fDlV~ 117 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELG--L-KNVTVVHGRAEEF-GQ-EEKFDVVT 117 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcC--C-CCEEEEeccHhhC-CC-CCCccEEE
Confidence 4578999999999999999998765 6899999999999999999998753 2 2499999999663 33 56899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+|. + ..+..+++.+.++|+|||.+++..+......+.++.+..|+...+.+
T Consensus 118 ~~~-~----------------------------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 118 SRA-V----------------------------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGKVEEVI 168 (187)
T ss_pred Ecc-c----------------------------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCceEeeeE
Confidence 962 0 12467889999999999999999999999999999999998854433
Q ss_pred ----ecCCCCceEEEEEe
Q psy2395 556 ----RDLSGIERVTQGKI 569 (570)
Q Consensus 556 ----~D~~g~~R~~~~~~ 569 (570)
..+.|-.-+++-++
T Consensus 169 ~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 169 ELTLPGLDGERHLVIIRK 186 (187)
T ss_pred EEecCCCCCcEEEEEEec
Confidence 34555556666543
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=144.50 Aligned_cols=156 Identities=22% Similarity=0.287 Sum_probs=118.2
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
...+.++|+.=+-. |.|...++++-... .++.+|||+|||||.+++++++.+ ..+|+|+|+||.+++.|+.|+.
T Consensus 130 ~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~-~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~ 206 (300)
T COG2264 130 ELNIELDPGLAFGTGTHPTTSLCLEALEKLL-KKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENAR 206 (300)
T ss_pred ceEEEEccccccCCCCChhHHHHHHHHHHhh-cCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHH
Confidence 34466666654433 78888888876653 478899999999999999999987 4689999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.|+... .++....+...... .++||+||+|-- .+.+..+...+.+.|+
T Consensus 207 ~N~v~~--~~~~~~~~~~~~~~--~~~~DvIVANIL----------------------------A~vl~~La~~~~~~lk 254 (300)
T COG2264 207 LNGVEL--LVQAKGFLLLEVPE--NGPFDVIVANIL----------------------------AEVLVELAPDIKRLLK 254 (300)
T ss_pred HcCCch--hhhcccccchhhcc--cCcccEEEehhh----------------------------HHHHHHHHHHHHHHcC
Confidence 864221 12233333322222 258999999841 1345788899999999
Q ss_pred cCeEEEE-EEcCCCHHHHHHHHHHCCCeeEEEEec
Q psy2395 524 KNGLLLI-EHGYNQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 524 pgG~l~~-~~~~~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
|||++++ .+=.++.+.+.+.+.+.||..+.+...
T Consensus 255 pgg~lIlSGIl~~q~~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 255 PGGRLILSGILEDQAESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred CCceEEEEeehHhHHHHHHHHHHhCCCeEeEEEec
Confidence 9999988 344578899999999999999888776
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.1e-15 Score=152.51 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=104.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+++.+|||+|||||.+++.++.. +.+++|+|+|+.|+..|+.|+..++. . ++.++++|+.+ ++...++||+|+
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~--~-~i~~~~~D~~~-l~~~~~~~D~Iv 253 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGI--E-DFFVKRGDATK-LPLSSESVDAIA 253 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCC--C-CCeEEecchhc-CCcccCCCCEEE
Confidence 56779999999999999988764 46899999999999999999987532 1 37899999976 343347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+||||...... .+......+..++..+.+.|+|||++++.++... .+.++++++|| ++..+
T Consensus 254 ~dPPyg~~~~~----------------~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~--~~~~~~~~~g~-i~~~~ 314 (329)
T TIGR01177 254 TDPPYGRSTTA----------------AGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI--DLESLAEDAFR-VVKRF 314 (329)
T ss_pred ECCCCcCcccc----------------cCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC--CHHHHHhhcCc-chhee
Confidence 99999753211 0111224678999999999999999998887543 44567889999 76555
Q ss_pred e
Q psy2395 556 R 556 (570)
Q Consensus 556 ~ 556 (570)
.
T Consensus 315 ~ 315 (329)
T TIGR01177 315 E 315 (329)
T ss_pred e
Confidence 4
|
This family is found exclusively in the Archaea. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=136.77 Aligned_cols=134 Identities=15% Similarity=0.233 Sum_probs=104.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.+++.++...+ +.+|+|+|+|+.+++.+++|+..++ . .+++++++|+.+. . ..++||+|++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~--~-~~i~~i~~d~~~~-~-~~~~fD~I~s 115 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELG--L-NNVEIVNGRAEDF-Q-HEEQFDVITS 115 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhC--C-CCeEEEecchhhc-c-ccCCccEEEe
Confidence 478999999999999999987765 5799999999999999999998752 1 2599999999663 2 2478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH---CCCeeEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK---YGFSDIK 553 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~---~Gf~~i~ 553 (570)
|. + ..+..+++.+.++|+|||.+++.++......+..+.++ .||..++
T Consensus 116 ~~-~----------------------------~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~ 166 (181)
T TIGR00138 116 RA-L----------------------------ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLE 166 (181)
T ss_pred hh-h----------------------------hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEee
Confidence 74 1 12356778889999999999999988887777777666 6998876
Q ss_pred EEecCCCCceEEE
Q psy2395 554 SWRDLSGIERVTQ 566 (570)
Q Consensus 554 ~~~D~~g~~R~~~ 566 (570)
... ..+-+|-++
T Consensus 167 ~~~-~~~~~~~~~ 178 (181)
T TIGR00138 167 VPP-LTGPDRHLV 178 (181)
T ss_pred ccc-cCCCceEEE
Confidence 543 333355443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-14 Score=143.02 Aligned_cols=147 Identities=16% Similarity=0.154 Sum_probs=109.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||||.++..+++..++.++|+|+|+|+.|++.|+++..........+++++++|+.+ ++..+++||+|+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~-lp~~~~sfD~V~ 150 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD-LPFDDCYFDAIT 150 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc-CCCCCCCEeEEE
Confidence 4678999999999999999987754357999999999999999877542110123469999999854 455457899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC--------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY-------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~-------------------- 534 (570)
++-.++..+ ....+++++.+.|||||.+++.. ..
T Consensus 151 ~~~~l~~~~-------------------------d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~ 205 (261)
T PLN02233 151 MGYGLRNVV-------------------------DRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVP 205 (261)
T ss_pred EecccccCC-------------------------CHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhH
Confidence 964332211 23678999999999999987632 11
Q ss_pred ---------------------CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 535 ---------------------NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 535 ---------------------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
...+++.++++++||..+..+.-..|.-++.+|+
T Consensus 206 ~~~~~~~~~~y~~l~~s~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 206 VATGYGLAKEYEYLKSSINEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HHHHhCChHHHHHHHHHHHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 1345677899999999998776666777777765
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=164.58 Aligned_cols=145 Identities=16% Similarity=0.185 Sum_probs=112.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||||.+++.++..+ ..+|++||+|+.+++.|++|+..|+.. ..+++++++|+++.+....++||+||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~-~~~v~~i~~D~~~~l~~~~~~fDlIil 614 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLS-GRQHRLIQADCLAWLKEAREQFDLIFI 614 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCC-ccceEEEEccHHHHHHHcCCCcCEEEE
Confidence 46799999999999999999764 357999999999999999999987421 136999999998766433468999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
||||+...... .. ..++...|..++..+.++|+|||.+++.+...+.....+.+.+.|+....+..
T Consensus 615 DPP~f~~~~~~--~~------------~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 615 DPPTFSNSKRM--ED------------SFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred CCCCCCCCCcc--ch------------hhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCCeEEEEec
Confidence 99998643110 00 01234567889999999999999999988777666668888889988765554
Q ss_pred cC
Q psy2395 557 DL 558 (570)
Q Consensus 557 D~ 558 (570)
..
T Consensus 681 ~~ 682 (702)
T PRK11783 681 KT 682 (702)
T ss_pred CC
Confidence 33
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=126.07 Aligned_cols=111 Identities=21% Similarity=0.372 Sum_probs=85.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
|+.+|||+|||+|.+++.+++..+ +.+|+|+|+||.+++.|++++... ....+++++++|+ .......++||+|++
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~-~~~~~~~~~~D~v~~ 76 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDA-EFDPDFLEPFDLVIC 76 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCC-HGGTTTSSCEEEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECcc-ccCcccCCCCCEEEE
Confidence 467999999999999999998654 689999999999999999999543 2456899999999 333333468999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+. +.... +. +.+....+++.+.+.|+|||++++..
T Consensus 77 ~~-~~~~~----------------~~----~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 77 SG-FTLHF----------------LL----PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp CS-GSGGG----------------CC----HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-Ccccc----------------cc----chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 65 31000 00 11345788999999999999999864
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.7e-14 Score=138.11 Aligned_cols=145 Identities=13% Similarity=0.170 Sum_probs=112.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.|++++.... -.+++++++|+.+ .+...++||+|+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~-~~~~~~~fD~V~ 119 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVHGNAME-LPFDDNSFDYVT 119 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcC---CCceEEEEechhc-CCCCCCCccEEE
Confidence 467899999999999999999875446799999999999999999987531 2369999999865 333347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-C-------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-N------------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~------------------- 535 (570)
++.++... ..+..+++++.+.|+|||++++.... .
T Consensus 120 ~~~~l~~~-------------------------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (231)
T TIGR02752 120 IGFGLRNV-------------------------PDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPL 174 (231)
T ss_pred EecccccC-------------------------CCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHH
Confidence 97543321 12367888999999999999864321 1
Q ss_pred -----------------------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 536 -----------------------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 536 -----------------------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+++.++|+++||..+++..-..|....++|.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 175 FGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred hhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 1255788999999999988877778888888763
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.3e-15 Score=144.85 Aligned_cols=106 Identities=18% Similarity=0.258 Sum_probs=74.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||||.++..+++...+..+|+|+|+|+.|++.|++.+...+ ..+++++++|+.+ ++..+++||+|+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~---~~~i~~v~~da~~-lp~~d~sfD~v~ 121 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREG---LQNIEFVQGDAED-LPFPDNSFDAVT 121 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT-----SEEEEE-BTTB---S-TT-EEEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhC---CCCeeEEEcCHHH-hcCCCCceeEEE
Confidence 467899999999999999999876556899999999999999999988632 2379999999955 666678999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+---+.. +......++++.++|||||.+++
T Consensus 122 ~~fglrn-------------------------~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 122 CSFGLRN-------------------------FPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp EES-GGG--------------------------SSHHHHHHHHHHHEEEEEEEEE
T ss_pred HHhhHHh-------------------------hCCHHHHHHHHHHHcCCCeEEEE
Confidence 8321110 11347889999999999999875
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.8e-14 Score=137.77 Aligned_cols=143 Identities=22% Similarity=0.315 Sum_probs=108.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||||.+++.+++..+ .++|+|+|+|+.|++.|++.+...+ ..+++|+++|+. .+|.++.+||+|.
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~---~~~i~fv~~dAe-~LPf~D~sFD~vt 124 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKG---VQNVEFVVGDAE-NLPFPDNSFDAVT 124 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccC---ccceEEEEechh-hCCCCCCccCEEE
Confidence 3689999999999999999999887 6899999999999999999988632 123999999994 5778789999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCC------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQ------------------ 536 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~------------------ 536 (570)
+.--.. ....+...+++++|+|||||++++ ++....
T Consensus 125 ~~fglr-------------------------nv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P 179 (238)
T COG2226 125 ISFGLR-------------------------NVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLP 179 (238)
T ss_pred eeehhh-------------------------cCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhh
Confidence 842211 112468999999999999998865 432211
Q ss_pred -------------------------HHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 537 -------------------------SNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 537 -------------------------~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
.+.+.+.+.+.||..+....-..|.--+.+|.
T Consensus 180 ~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 180 LIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred hhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 25677778888998887444445554444443
|
|
| >KOG3429|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-15 Score=133.37 Aligned_cols=69 Identities=38% Similarity=0.532 Sum_probs=62.2
Q ss_pred cccCCCCeEEEEeeccCCCCcccccccceEEEE-------ecC-----------------Cc-eEEEEeccccHHHHHHH
Q psy2395 215 ININPADLRIDTYRASGAGGQHINKTDSAVRIT-------HIP-----------------TG-IVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 215 ~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~-------h~p-----------------~g-i~~~~~~~rsq~~n~~~ 269 (570)
-.||.+.+.+.|.||||||||||||++|+|.++ +|| .| |++.++.+|||+.|.++
T Consensus 35 g~ipld~~~i~y~RSSGPGGQNVNKvNTKv~vrf~vs~a~Wipe~~R~~~~~~~~~rink~gelvI~Sd~TRsq~~NiaD 114 (172)
T KOG3429|consen 35 GKIPLDQLEISYSRSSGPGGQNVNKVNTKVEVRFKVSNAEWIPEFLRNKLLTTEKNRINKDGELVIYSDKTRSQHKNIAD 114 (172)
T ss_pred CCCchhheEEEEeecCCCCCcccccccceEEEEEecchhhhccHHHHHHHHHHHHHhhccCccEEEecchhHHhhccHHH
Confidence 468888999999999999999999999999998 355 24 99999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2395 270 ALKILLARIKDSKL 283 (570)
Q Consensus 270 a~~~l~~~l~~~~~ 283 (570)
|+++|++.|++.+.
T Consensus 115 cleKlr~~I~~~~~ 128 (172)
T KOG3429|consen 115 CLEKLRDIIRAAEQ 128 (172)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999997654
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=127.19 Aligned_cols=145 Identities=19% Similarity=0.286 Sum_probs=104.4
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
+.+|.+.+..++..+.....-.+.+|+|+|||||.+++.++..++ .+|+|+|+++++++.++.|+.+ +..++.|
T Consensus 24 Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~----l~g~v~f 97 (198)
T COG2263 24 YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE----LLGDVEF 97 (198)
T ss_pred cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh----hCCceEE
Confidence 345667666666555432223567899999999999999998874 7999999999999999999997 4667999
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
+++|+.+. ..+||.+++||||..... + ....++...++.+ -.++-.+...
T Consensus 98 ~~~dv~~~----~~~~dtvimNPPFG~~~r------------------h-aDr~Fl~~Ale~s-------~vVYsiH~a~ 147 (198)
T COG2263 98 VVADVSDF----RGKFDTVIMNPPFGSQRR------------------H-ADRPFLLKALEIS-------DVVYSIHKAG 147 (198)
T ss_pred EEcchhhc----CCccceEEECCCCccccc------------------c-CCHHHHHHHHHhh-------heEEEeeccc
Confidence 99999542 368999999999974310 0 1123444444432 2344455566
Q ss_pred CHHHHHHHHHHCCCeeEEEEe
Q psy2395 536 QSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 536 ~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
..+-+.+.....|+.....+.
T Consensus 148 ~~~f~~~~~~~~G~~v~~~~~ 168 (198)
T COG2263 148 SRDFVEKFAADLGGTVTHIER 168 (198)
T ss_pred cHHHHHHHHHhcCCeEEEEEE
Confidence 777788888899988765543
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=148.07 Aligned_cols=168 Identities=20% Similarity=0.260 Sum_probs=115.9
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+++...+..++..++. ..++.+|||+|||+|..++.++....+..+|+|+|+++.+++.+++|+..++. .++
T Consensus 229 ~G~~~~qd~~s~lv~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---~~v 303 (444)
T PRK14902 229 DGLITIQDESSMLVAPALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---TNI 303 (444)
T ss_pred CceEEEEChHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeE
Confidence 4555566555555554443 34677999999999999999998763357999999999999999999987532 249
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~l~ 529 (570)
.++++|+.+......++||+|++|||+..... ..+.|...+.....++ .....++..+.++|+|||.++
T Consensus 304 ~~~~~D~~~~~~~~~~~fD~Vl~D~Pcsg~G~-------~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lv 376 (444)
T PRK14902 304 ETKALDARKVHEKFAEKFDKILVDAPCSGLGV-------IRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILV 376 (444)
T ss_pred EEEeCCcccccchhcccCCEEEEcCCCCCCee-------eccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence 99999997643222368999999999764322 1233433333322222 234678999999999999998
Q ss_pred EEEcC----CCHHHHHHHHHHCC-CeeEE
Q psy2395 530 IEHGY----NQSNLVRKLLFKYG-FSDIK 553 (570)
Q Consensus 530 ~~~~~----~~~~~l~~ll~~~G-f~~i~ 553 (570)
+.+.. .+...+..++++++ |..+.
T Consensus 377 ystcs~~~~Ene~vv~~~l~~~~~~~~~~ 405 (444)
T PRK14902 377 YSTCTIEKEENEEVIEAFLEEHPEFELVP 405 (444)
T ss_pred EEcCCCChhhhHHHHHHHHHhCCCcEEec
Confidence 75432 23445566677653 66544
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-13 Score=131.76 Aligned_cols=125 Identities=18% Similarity=0.217 Sum_probs=100.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.+++.+++.++ +.+|+|+|+|+.+++.|++|+..++. .+++++++|+...+ .++||+|+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~---~~i~~~~~d~~~~~---~~~~D~v~ 102 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGC---GNIDIIPGEAPIEL---PGKADAIF 102 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC---CCeEEEecCchhhc---CcCCCEEE
Confidence 4677999999999999999998875 58999999999999999999987521 35899999984332 35799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHHCCCeeEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
++... ..+..+++.+.+.|+|||++++.. ...+...+.+++.+.||..+++
T Consensus 103 ~~~~~----------------------------~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 103 IGGSG----------------------------GNLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred ECCCc----------------------------cCHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcceE
Confidence 95321 123677888999999999998864 5677788899999999987654
Q ss_pred E
Q psy2395 555 W 555 (570)
Q Consensus 555 ~ 555 (570)
.
T Consensus 155 ~ 155 (187)
T PRK08287 155 V 155 (187)
T ss_pred E
Confidence 3
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-13 Score=145.76 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=123.7
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+.....+..++-.++. ..++.+|||+|||+|..++.++...+ +.+|+|+|+|+.+++.+++|+..+ +.++
T Consensus 223 ~G~~~iQd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~----g~~~ 295 (427)
T PRK10901 223 EGWVSVQDAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRL----GLKA 295 (427)
T ss_pred CceEEEECHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHc----CCCe
Confidence 3444444444444333332 34678999999999999999998875 379999999999999999999874 4457
Q ss_pred EEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhccccCeEE
Q psy2395 454 KFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 454 ~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~LkpgG~l 528 (570)
+++++|+.+.... ..++||.|++|||+....... ..|...+...... ......++..+.++|+|||++
T Consensus 296 ~~~~~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~-------~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~l 368 (427)
T PRK10901 296 TVIVGDARDPAQWWDGQPFDRILLDAPCSATGVIR-------RHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTL 368 (427)
T ss_pred EEEEcCcccchhhcccCCCCEEEECCCCCcccccc-------cCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEE
Confidence 8999999653221 136799999999987543221 1222221111111 134568999999999999999
Q ss_pred EEEEc----CCCHHHHHHHHHHC-CCeeE----------EEEecCCCCceEEEEEe
Q psy2395 529 LIEHG----YNQSNLVRKLLFKY-GFSDI----------KSWRDLSGIERVTQGKI 569 (570)
Q Consensus 529 ~~~~~----~~~~~~l~~ll~~~-Gf~~i----------~~~~D~~g~~R~~~~~~ 569 (570)
++.+. ..+...+..+++++ +|..+ .++++..+.+-|+++++
T Consensus 369 vystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 424 (427)
T PRK10901 369 LYATCSILPEENEQQIKAFLARHPDAELLDTGTPQQPGRQLLPGEEDGDGFFYALL 424 (427)
T ss_pred EEEeCCCChhhCHHHHHHHHHhCCCCEEecCCCCCCCceEECCCCCCCCCeEEEEE
Confidence 88653 34556677777765 46533 34566667788888764
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=139.47 Aligned_cols=160 Identities=24% Similarity=0.321 Sum_probs=115.8
Q ss_pred eeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 368 LVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 368 ~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..+.++|+.-+=. |.|...++++... ..++.+|||+|||||.++++.++.+ ..+|+|+|++|.+++.|++|+..
T Consensus 130 ~~I~idPg~AFGTG~H~TT~lcl~~l~~~-~~~g~~vLDvG~GSGILaiaA~klG--A~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPTTRLCLELLEKY-VKPGKRVLDVGCGSGILAIAAAKLG--AKKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp EEEEESTTSSS-SSHCHHHHHHHHHHHHH-SSTTSEEEEES-TTSHHHHHHHHTT--BSEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHHh-ccCCCEEEEeCCcHHHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHH
Confidence 4566777644433 7888888887665 4567899999999999999999887 46899999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
|+. ..++.+. .. .... .++||+|++|-- .+.+..++..+.++|+|
T Consensus 207 N~~--~~~~~v~--~~-~~~~--~~~~dlvvANI~----------------------------~~vL~~l~~~~~~~l~~ 251 (295)
T PF06325_consen 207 NGV--EDRIEVS--LS-EDLV--EGKFDLVVANIL----------------------------ADVLLELAPDIASLLKP 251 (295)
T ss_dssp TT---TTCEEES--CT-SCTC--CS-EEEEEEES-----------------------------HHHHHHHHHHCHHHEEE
T ss_pred cCC--CeeEEEE--Ee-cccc--cccCCEEEECCC----------------------------HHHHHHHHHHHHHhhCC
Confidence 753 3345442 11 1112 378999999852 13457788888999999
Q ss_pred CeEEEE-EEcCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 525 NGLLLI-EHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 525 gG~l~~-~~~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
||++++ .+-..+.+.+.+.+++ ||..++...+ |.--.+.++
T Consensus 252 ~G~lIlSGIl~~~~~~v~~a~~~-g~~~~~~~~~--~~W~~l~~~ 293 (295)
T PF06325_consen 252 GGYLILSGILEEQEDEVIEAYKQ-GFELVEEREE--GEWVALVFK 293 (295)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHT-TEEEEEEEEE--TTEEEEEEE
T ss_pred CCEEEEccccHHHHHHHHHHHHC-CCEEEEEEEE--CCEEEEEEE
Confidence 999988 3456788889999976 9998766543 444444443
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=128.12 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=113.2
Q ss_pred eecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 371 NITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 371 ~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
..++++-+..++-+.+.-..+. +.++.++||+|||||.+++.++..+| ..+|||+|-++++++..++|+.+.+ -
T Consensus 10 ~~~~~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg---~ 83 (187)
T COG2242 10 ERDEGGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFG---V 83 (187)
T ss_pred ccCCCCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhC---C
Confidence 3344444444555555443333 46788999999999999999997665 7999999999999999999999853 3
Q ss_pred CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.++.++.+|+.+.++... +||.||.. |. ..+..+++.+..+|+|||++++
T Consensus 84 ~n~~vv~g~Ap~~L~~~~-~~daiFIG--------------------------Gg---~~i~~ile~~~~~l~~ggrlV~ 133 (187)
T COG2242 84 DNLEVVEGDAPEALPDLP-SPDAIFIG--------------------------GG---GNIEEILEAAWERLKPGGRLVA 133 (187)
T ss_pred CcEEEEeccchHhhcCCC-CCCEEEEC--------------------------CC---CCHHHHHHHHHHHcCcCCeEEE
Confidence 469999999988777543 79999883 22 3457899999999999999998
Q ss_pred EE-cCCCHHHHHHHHHHCCC-eeEE
Q psy2395 531 EH-GYNQSNLVRKLLFKYGF-SDIK 553 (570)
Q Consensus 531 ~~-~~~~~~~l~~ll~~~Gf-~~i~ 553 (570)
-. .........+.+++.|| +.++
T Consensus 134 naitlE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 134 NAITLETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred EeecHHHHHHHHHHHHHcCCceEEE
Confidence 43 45667778888999999 4443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.5e-13 Score=134.41 Aligned_cols=147 Identities=22% Similarity=0.282 Sum_probs=107.8
Q ss_pred eeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 369 VLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 369 ~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
.+.++|+.-... +.|..+++.+... ..++.+|||+|||+|.+++.+++.+. .+|+|+|+|+.+++.|++|+..+
T Consensus 89 ~i~i~p~~afgtg~h~tt~~~l~~l~~~-~~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~ 165 (250)
T PRK00517 89 NIELDPGMAFGTGTHPTTRLCLEALEKL-VLPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELN 165 (250)
T ss_pred EEEECCCCccCCCCCHHHHHHHHHHHhh-cCCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHc
Confidence 345555533322 5677777766543 34678999999999999998887653 47999999999999999999875
Q ss_pred cccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
+. ...+.+..+| .+||+|++|... +.+..+++.+.++|+||
T Consensus 166 ~~--~~~~~~~~~~---------~~fD~Vvani~~----------------------------~~~~~l~~~~~~~Lkpg 206 (250)
T PRK00517 166 GV--ELNVYLPQGD---------LKADVIVANILA----------------------------NPLLELAPDLARLLKPG 206 (250)
T ss_pred CC--CceEEEccCC---------CCcCEEEEcCcH----------------------------HHHHHHHHHHHHhcCCC
Confidence 31 1223333332 269999998521 24567888999999999
Q ss_pred eEEEEE-EcCCCHHHHHHHHHHCCCeeEEEEec
Q psy2395 526 GLLLIE-HGYNQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 526 G~l~~~-~~~~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
|++++. +...+.+.+.+.+.+.||..+....+
T Consensus 207 G~lilsgi~~~~~~~v~~~l~~~Gf~~~~~~~~ 239 (250)
T PRK00517 207 GRLILSGILEEQADEVLEAYEEAGFTLDEVLER 239 (250)
T ss_pred cEEEEEECcHhhHHHHHHHHHHCCCEEEEEEEe
Confidence 999885 34567788899999999998876653
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.7e-13 Score=143.92 Aligned_cols=154 Identities=20% Similarity=0.308 Sum_probs=108.2
Q ss_pred CeeeeecC------CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 367 GLVLNITS------DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 367 ~~~~~v~~------~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
|..|.++. +.|....+++.++..+ .++.+|||+|||||.+++.++..+ ..+|+++|+|+.+++.|++
T Consensus 189 g~~f~vdl~~g~ktG~flDqr~~R~~~~~~-----~~g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~ 261 (396)
T PRK15128 189 GMKLLVDIQGGHKTGYYLDQRDSRLATRRY-----VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQ 261 (396)
T ss_pred CEEEEEecccccccCcChhhHHHHHHHHHh-----cCCCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHH
Confidence 66777653 3454444455444433 246799999999999998877543 4699999999999999999
Q ss_pred HHHhhcccCC-CCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 441 NAKKKLTKYN-IPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 441 n~~~~~~~~~-~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
|+..|+ .+ .+++++++|+++.+.. ..++||+||+||||+..... ++. .+...|..++.
T Consensus 262 N~~~Ng--l~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~-------------~l~---~~~~~y~~l~~ 323 (396)
T PRK15128 262 NVELNK--LDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKS-------------QLM---GACRGYKDINM 323 (396)
T ss_pred HHHHcC--CCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChH-------------HHH---HHHHHHHHHHH
Confidence 999864 22 3689999999886532 13589999999999754311 111 12345788889
Q ss_pred HHhhccccCeEEEEEEc--CCCHHHHHHHHH
Q psy2395 517 NASKYLVKNGLLLIEHG--YNQSNLVRKLLF 545 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~--~~~~~~l~~ll~ 545 (570)
.+.++|+|||.+++... .-..+.+.+.+.
T Consensus 324 ~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~ 354 (396)
T PRK15128 324 LAIQLLNPGGILLTFSCSGLMTSDLFQKIIA 354 (396)
T ss_pred HHHHHcCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence 99999999999886433 233444444443
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.2e-13 Score=139.93 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=110.5
Q ss_pred CCccccchhHHHHHHHHHhhc--CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKT--FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~--~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
...+.|.+.++.+.+.++... ..++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|+++... .
T Consensus 88 D~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~------~ 160 (340)
T PLN02490 88 DHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL------K 160 (340)
T ss_pred CCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc------c
Confidence 334456666676666555532 23567999999999999999988764 47999999999999999988642 2
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+++++.+|+.+ ++..+++||+|+++..+.... ....+++++.+.|+|||.+++.
T Consensus 161 ~i~~i~gD~e~-lp~~~~sFDvVIs~~~L~~~~-------------------------d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 161 ECKIIEGDAED-LPFPTDYADRYVSAGSIEYWP-------------------------DPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred CCeEEeccHHh-CCCCCCceeEEEEcChhhhCC-------------------------CHHHHHHHHHHhcCCCcEEEEE
Confidence 47889999855 343347899999976543211 1256889999999999998764
Q ss_pred Ec-----------------CCCHHHHHHHHHHCCCeeEEEE
Q psy2395 532 HG-----------------YNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 532 ~~-----------------~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
.+ ....+++.++++++||..+++.
T Consensus 215 ~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~ 255 (340)
T PLN02490 215 GPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLK 255 (340)
T ss_pred EecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEE
Confidence 21 1245778899999999998764
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=127.49 Aligned_cols=109 Identities=28% Similarity=0.423 Sum_probs=86.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv 475 (570)
++.+|||+|||+|.++..++....++.+++|+|+|+.+++.|+++++.++ .. +++|+++|+.+ ++. ..++||+|+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--~~-ni~~~~~d~~~-l~~~~~~~~D~I~ 78 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--LD-NIEFIQGDIED-LPQELEEKFDIII 78 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--ST-TEEEEESBTTC-GCGCSSTTEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--cc-ccceEEeehhc-cccccCCCeeEEE
Confidence 56799999999999999999543336899999999999999999998742 22 69999999988 542 126899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+++++... .....+++.+.+.|+++|.+++....
T Consensus 79 ~~~~l~~~-------------------------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 79 SNGVLHHF-------------------------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EESTGGGT-------------------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EcCchhhc-------------------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 98776322 13467899999999999999886654
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=137.90 Aligned_cols=133 Identities=19% Similarity=0.203 Sum_probs=99.8
Q ss_pred HhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCc
Q psy2395 391 VKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKL 470 (570)
Q Consensus 391 ~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~ 470 (570)
+..+..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...+ ...+++++++|+.+..+...++
T Consensus 38 l~~l~~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g--~~~~v~~~~~d~~~l~~~~~~~ 112 (255)
T PRK11036 38 LAELPPRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKG--VSDNMQFIHCAAQDIAQHLETP 112 (255)
T ss_pred HHhcCCCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CccceEEEEcCHHHHhhhcCCC
Confidence 33334566799999999999999999753 689999999999999999987642 2346899999996643333478
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------- 534 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------- 534 (570)
||+|+++..+... .....+++.+.++|+|||++++.+..
T Consensus 113 fD~V~~~~vl~~~-------------------------~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~~ 167 (255)
T PRK11036 113 VDLILFHAVLEWV-------------------------ADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDY 167 (255)
T ss_pred CCEEEehhHHHhh-------------------------CCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChHH
Confidence 9999997543211 11257888999999999999764311
Q ss_pred ------------------CCHHHHHHHHHHCCCeeEE
Q psy2395 535 ------------------NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 535 ------------------~~~~~l~~ll~~~Gf~~i~ 553 (570)
...+.+.++++++||..+.
T Consensus 168 ~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~ 204 (255)
T PRK11036 168 VQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMG 204 (255)
T ss_pred HHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEee
Confidence 1246788999999998763
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.7e-13 Score=137.70 Aligned_cols=152 Identities=20% Similarity=0.245 Sum_probs=112.5
Q ss_pred eeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 368 LVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 368 ~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..+.++|+.-+.. |.|....+++... ..++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+.+++.|++|+..
T Consensus 128 ~~i~ldpg~aFgtG~h~tt~l~l~~l~~~-~~~g~~VLDvGcGsG~lai~aa~~g--~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 128 LIIMLDPGLAFGTGTHPTTSLCLEWLEDL-DLKDKNVIDVGCGSGILSIAALKLG--AAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHhh-cCCCCEEEEeCCChhHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHH
Confidence 4566677765433 5666666655443 3467899999999999999988764 36899999999999999999987
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
++ ...++.+..+|... ...++||+|++|+.. ..+..++..+.+.|+|
T Consensus 205 n~--~~~~~~~~~~~~~~---~~~~~fDlVvan~~~----------------------------~~l~~ll~~~~~~Lkp 251 (288)
T TIGR00406 205 NQ--VSDRLQVKLIYLEQ---PIEGKADVIVANILA----------------------------EVIKELYPQFSRLVKP 251 (288)
T ss_pred cC--CCcceEEEeccccc---ccCCCceEEEEecCH----------------------------HHHHHHHHHHHHHcCC
Confidence 53 23356777776422 123689999998631 2346788899999999
Q ss_pred CeEEEE-EEcCCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 525 NGLLLI-EHGYNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 525 gG~l~~-~~~~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
||++++ .+...+...+.+.+.+. |..+++..
T Consensus 252 gG~li~sgi~~~~~~~v~~~~~~~-f~~~~~~~ 283 (288)
T TIGR00406 252 GGWLILSGILETQAQSVCDAYEQG-FTVVEIRQ 283 (288)
T ss_pred CcEEEEEeCcHhHHHHHHHHHHcc-CceeeEec
Confidence 999987 44567788888888876 88776544
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=131.62 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=106.5
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+.++.++..++|+.|++.......+ .+..+.+..+..+..| .++..+++
T Consensus 18 ~~v~~a~~~vpR~~fv~~~~~~~ay----------------------------~d~~~~~~~~~~~~~p---~~~~~~~~ 66 (205)
T PRK13944 18 ERVKKAMLSVPREEFVMPEYRMMAY----------------------------EDRPLPLFAGATISAP---HMVAMMCE 66 (205)
T ss_pred HHHHHHHHhCCHhHcCChhHHhcCc----------------------------cCCCcccCCCCEechH---HHHHHHHH
Confidence 5688899999999998743322211 1122222222222222 22333333
Q ss_pred hc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 393 KT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 393 ~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
.+ ..++.+|||+|||+|+++..+++..+...+|+|+|+++.+++.|++|+..++ ...+++++.+|+.+.++. ..+|
T Consensus 67 ~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~--~~~~v~~~~~d~~~~~~~-~~~f 143 (205)
T PRK13944 67 LIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLG--YWGVVEVYHGDGKRGLEK-HAPF 143 (205)
T ss_pred hcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEECCcccCCcc-CCCc
Confidence 32 2467899999999999999999876445799999999999999999998642 223589999999765543 4689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
|+|+++.+.. .+.+.+.+.|+|||++++.++.
T Consensus 144 D~Ii~~~~~~-------------------------------~~~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 144 DAIIVTAAAS-------------------------------TIPSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred cEEEEccCcc-------------------------------hhhHHHHHhcCcCcEEEEEEcC
Confidence 9999975421 1223566789999999886654
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-13 Score=142.34 Aligned_cols=154 Identities=14% Similarity=0.069 Sum_probs=112.4
Q ss_pred ccCeeeeecCCccccc--hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPR--PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+.+..|.++|+.|.+. ...+.+...+...+. .++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|
T Consensus 198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N 274 (374)
T TIGR02085 198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQS 274 (374)
T ss_pred ECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHH
Confidence 4567889999999876 455666666655432 24579999999999999999954 36899999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
++.++. .+++|+++|+.+.+.....+||+|++||||-.. ...+++.+. .
T Consensus 275 ~~~~~~---~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~---------------------------~~~~l~~l~-~ 323 (374)
T TIGR02085 275 AQMLGL---DNLSFAALDSAKFATAQMSAPELVLVNPPRRGI---------------------------GKELCDYLS-Q 323 (374)
T ss_pred HHHcCC---CcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC---------------------------cHHHHHHHH-h
Confidence 987532 269999999966543222469999999997411 133444443 3
Q ss_pred cccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEE
Q psy2395 522 LVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 522 LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
++|++++++++.+.....-...| .||+...+
T Consensus 324 ~~p~~ivyvsc~p~TlaRDl~~L--~gy~l~~~ 354 (374)
T TIGR02085 324 MAPKFILYSSCNAQTMAKDIAEL--SGYQIERV 354 (374)
T ss_pred cCCCeEEEEEeCHHHHHHHHHHh--cCceEEEE
Confidence 79999999998765544444445 68876544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=143.89 Aligned_cols=155 Identities=13% Similarity=0.180 Sum_probs=116.3
Q ss_pred cCeeeeecCCccccc--hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPR--PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
.+..|.++++.|.+. ..++.+++.+..... .++.+|||+|||+|.+++.+++.. .+|+|+|+|+.+++.|++|+
T Consensus 258 ~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~ 334 (431)
T TIGR00479 258 GDLSFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNA 334 (431)
T ss_pred CCEEEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHH
Confidence 478899999999865 466777777766543 455799999999999999999764 58999999999999999999
Q ss_pred HhhcccCCCCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
..++. .+++|+.+|+.+.++. ...+||+|++|||+... ...+++.+.
T Consensus 335 ~~~~~---~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~---------------------------~~~~l~~l~ 384 (431)
T TIGR00479 335 ELNGI---ANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC---------------------------AAEVLRTII 384 (431)
T ss_pred HHhCC---CceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC---------------------------CHHHHHHHH
Confidence 87532 3699999999664332 13579999999996411 134444433
Q ss_pred hccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEE
Q psy2395 520 KYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
.++|++.+++.+.+.....-...|.+.||....+
T Consensus 385 -~l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~ 418 (431)
T TIGR00479 385 -ELKPERIVYVSCNPATLARDLEFLCKEGYGITWV 418 (431)
T ss_pred -hcCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEE
Confidence 3889998888776655555566677788876544
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.7e-13 Score=128.01 Aligned_cols=125 Identities=22% Similarity=0.283 Sum_probs=99.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.+++.+++..++..+|+++|+++.+++.|++|+..++ ...++.++.+|+.+.++...+.||+|+
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g--~~~~v~~~~~d~~~~l~~~~~~~D~V~ 116 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFG--VLNNIVLIKGEAPEILFTINEKFDRIF 116 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCCeEEEEechhhhHhhcCCCCCEEE
Confidence 567899999999999999998765445799999999999999999998752 134689999998765444346899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHHCCCe
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFKYGFS 550 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~~Gf~ 550 (570)
++.. ...+..+++.+.+.|+|||.+++.. ...+...+...+++.||.
T Consensus 117 ~~~~----------------------------~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~ 164 (198)
T PRK00377 117 IGGG----------------------------SEKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFN 164 (198)
T ss_pred ECCC----------------------------cccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCC
Confidence 9642 1134678889999999999998744 345667888889999984
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=132.09 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=108.5
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+.+...+..++..++. +.++.+|||+|||+|..++.++....+...|+|+|+++.+++.+++|+..++. .++
T Consensus 50 ~G~~~~qd~~s~~~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---~~v 124 (264)
T TIGR00446 50 SGLYYIQEASSMIPPLALE--PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---LNV 124 (264)
T ss_pred CCeEEEECHHHHHHHHHhC--CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcE
Confidence 3444455445555544443 35678999999999999999988765456999999999999999999997532 258
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~l~ 529 (570)
.++++|+... ....++||+|++|||+..... ++..|...+......+ .....++..+.++|+|||+++
T Consensus 125 ~~~~~D~~~~-~~~~~~fD~Vl~D~Pcsg~G~-------~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lv 196 (264)
T TIGR00446 125 AVTNFDGRVF-GAAVPKFDAILLDAPCSGEGV-------IRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLV 196 (264)
T ss_pred EEecCCHHHh-hhhccCCCEEEEcCCCCCCcc-------cccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 9999998543 222357999999999864332 2233332221111111 234679999999999999998
Q ss_pred EEEcCCC----HHHHHHHHHHC
Q psy2395 530 IEHGYNQ----SNLVRKLLFKY 547 (570)
Q Consensus 530 ~~~~~~~----~~~l~~ll~~~ 547 (570)
+.+..-. ...+..+++.+
T Consensus 197 Ystcs~~~~Ene~vv~~~l~~~ 218 (264)
T TIGR00446 197 YSTCSLEPEENEAVVDYLLEKR 218 (264)
T ss_pred EEeCCCChHHHHHHHHHHHHhC
Confidence 8654322 33445555553
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-13 Score=129.77 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=100.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~ 473 (570)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++++..++ -.++.++++|+.+.++ ..+++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEG---LTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcC---CCCEEEEecCHHHHHHHHcCccccce
Confidence 3567999999999999999998775 5799999999999999999998642 1369999999833333 23468999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i 552 (570)
|++|.|....... .......+..+++.+.++|+|||.+++.+.. .....+.+.+.+.|+...
T Consensus 115 V~~~~~~p~~~~~-----------------~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 115 IYLNFPDPWPKKR-----------------HHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEECCCCCCCcc-----------------ccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 9998542111000 0000112468899999999999999987654 456678888999998643
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.2e-13 Score=136.59 Aligned_cols=155 Identities=15% Similarity=0.128 Sum_probs=110.6
Q ss_pred ccCeeeeecCCccccc--hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPR--PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+.+..|.+.++.|.+. ..++.+++.+..++. .++.+|||+|||+|.+++.++.. +.+|+|+|+|+.+++.|++|
T Consensus 138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n 214 (315)
T PRK03522 138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQS 214 (315)
T ss_pred ECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHH
Confidence 3467788899999876 345667666655532 24679999999999999999974 36899999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
+..++. .+++|+++|+.+......++||+|++|||+.-.. ..+++.+ ..
T Consensus 215 ~~~~~l---~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~G~~---------------------------~~~~~~l-~~ 263 (315)
T PRK03522 215 AAELGL---TNVQFQALDSTQFATAQGEVPDLVLVNPPRRGIG---------------------------KELCDYL-SQ 263 (315)
T ss_pred HHHcCC---CceEEEEcCHHHHHHhcCCCCeEEEECCCCCCcc---------------------------HHHHHHH-HH
Confidence 987532 3699999999764432335799999999953110 2222222 23
Q ss_pred cccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 522 LVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 522 LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+.|++.+++.+.+.....-.+.| .||...++.
T Consensus 264 ~~~~~ivyvsc~p~t~~rd~~~l--~~y~~~~~~ 295 (315)
T PRK03522 264 MAPRFILYSSCNAQTMAKDLAHL--PGYRIERVQ 295 (315)
T ss_pred cCCCeEEEEECCcccchhHHhhc--cCcEEEEEE
Confidence 67889889888765544333444 588765543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=130.43 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=82.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|+++..+++..+...+|+|+|+++.+++.|++|+..++ -.+++++++|+.+.... ..+||+|+
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g---~~~v~~~~~d~~~~~~~-~~~fD~Ii 151 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLG---LDNVIVIVGDGTQGWEP-LAPYDRIY 151 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCC---CCCeEEEECCcccCCcc-cCCCCEEE
Confidence 567899999999999999999886545689999999999999999998753 13699999999765432 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
++++.. .+...+.+.|+|||++++.++.
T Consensus 152 ~~~~~~-------------------------------~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 152 VTAAGP-------------------------------KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred EcCCcc-------------------------------cccHHHHHhcCcCcEEEEEEcC
Confidence 986421 1123456689999999987654
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=137.08 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=99.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.+ +++|+|+|+|+.+++.|++++..++ ...+++|+++|+.+ ++..+++||+|+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g--~~~~v~~~~~D~~~-~~~~~~~FD~V~ 191 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQG--LSDKVSFQVADALN-QPFEDGQFDLVW 191 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcCccc-CCCCCCCccEEE
Confidence 356799999999999999999876 4799999999999999999987642 23469999999865 444457999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++-.+... .....+++++.++|+|||.+++....
T Consensus 192 s~~~~~h~-------------------------~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (340)
T PLN02244 192 SMESGEHM-------------------------PDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK 246 (340)
T ss_pred ECCchhcc-------------------------CCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence 96432211 12367889999999999999874310
Q ss_pred ----------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 ----------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 ----------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+.+.++++++||..+++.
T Consensus 247 i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 247 ICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred HHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 024567788999999988653
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=141.76 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=114.6
Q ss_pred ecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 372 ITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 372 v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
+.++.+.....+..++..++. ..++.+|||+|||+|..+..++.......+|+|+|+|+.+++.+++|+..++. .
T Consensus 227 ~~~G~~~vqd~~s~l~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~ 301 (445)
T PRK14904 227 LKLGLVSVQNPTQALACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---T 301 (445)
T ss_pred HhCcEEEEeCHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---C
Confidence 346666666555555544443 34678999999999999999987654457999999999999999999987532 2
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGL 527 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~ 527 (570)
+++++++|+.+..+ ..+||+|++|||+....... ..|...+......+ .....++..+.++|+|||+
T Consensus 302 ~v~~~~~Da~~~~~--~~~fD~Vl~D~Pcsg~g~~~-------r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 302 IIETIEGDARSFSP--EEQPDAILLDAPCTGTGVLG-------RRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred eEEEEeCccccccc--CCCCCEEEEcCCCCCcchhh-------cCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 58999999966432 36899999999986543221 12222111111111 2345799999999999999
Q ss_pred EEEEEcC----CCHHHHHHHHHHC-CCee
Q psy2395 528 LLIEHGY----NQSNLVRKLLFKY-GFSD 551 (570)
Q Consensus 528 l~~~~~~----~~~~~l~~ll~~~-Gf~~ 551 (570)
+++.+.. .+...+..+++.+ +|..
T Consensus 373 lvystcs~~~~Ene~~v~~~l~~~~~~~~ 401 (445)
T PRK14904 373 LVYATCSIEPEENELQIEAFLQRHPEFSA 401 (445)
T ss_pred EEEEeCCCChhhHHHHHHHHHHhCCCCEE
Confidence 9986643 3445567777766 4654
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.3e-13 Score=127.76 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=104.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~I 474 (570)
.+.+|||+|||+|.++..+++..+ ..+|+|+|+++.+++.|++++...+ . .++.++++|+.+... ..++.||.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~--l-~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLG--L-KNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhC--C-CCEEEEccCHHHHHHhhCCCCceeEE
Confidence 456999999999999999999876 6899999999999999999988642 1 269999999976432 123589999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHCC-CeeE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKYG-FSDI 552 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~G-f~~i 552 (570)
++|+|-..... ++.++.. ....+++.+.++|+|||.+++.+... ....+.+.+...+ |..+
T Consensus 92 ~~~~pdpw~k~--------~h~~~r~---------~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 92 FLNFPDPWPKK--------RHNKRRI---------TQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENT 154 (194)
T ss_pred EEECCCcCCCC--------Ccccccc---------CCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeEec
Confidence 99965211110 1111110 12678999999999999999887654 3666777777776 8776
Q ss_pred EEEecCCC
Q psy2395 553 KSWRDLSG 560 (570)
Q Consensus 553 ~~~~D~~g 560 (570)
....|+.+
T Consensus 155 ~~~~~~~~ 162 (194)
T TIGR00091 155 SKSTDLNN 162 (194)
T ss_pred ccccccCC
Confidence 65555544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-12 Score=130.37 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=108.6
Q ss_pred ccCeee-eecCCccccc-hhHHHHHHHHHhhcCC------CCCEEEEECCcccHHH-HHHHHhcCCCcEEEEEeCCHHHH
Q psy2395 365 FYGLVL-NITSDVLIPR-PETELLVDLIVKKTFE------KKIKLLEMGTGSGAIA-IAIAIYSKNKIEIIATDISKFAL 435 (570)
Q Consensus 365 f~~~~~-~v~~~~~~pr-~~t~~l~~~~~~~~~~------~~~~VLDlGcGtG~i~-l~la~~~~~~~~V~gvDis~~al 435 (570)
+|++.+ .++++.++|. |..-..+.++.+.+.. ...++||||||..++- +..++.+ +++++|+||++.++
T Consensus 62 dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl 139 (299)
T PF05971_consen 62 DFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSL 139 (299)
T ss_dssp HH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHH
T ss_pred hcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHH
Confidence 346655 7889999999 5555566666554431 2468999999998884 4445554 69999999999999
Q ss_pred HHHHHHHHhh-cccCCCCEEEEEc----ccccccccCCCceeEEEECCCCCCCCCcccCCCCcc-----------ccccc
Q psy2395 436 KIAKKNAKKK-LTKYNIPIKFIKS----NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR-----------FEPIN 499 (570)
Q Consensus 436 ~~A~~n~~~~-~~~~~~~v~~~~~----D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~-----------~ep~~ 499 (570)
+.|++|+..| . +..+|+++.. +++..+....+.||+.+|||||+...+........+ -.|..
T Consensus 140 ~~A~~nv~~N~~--L~~~I~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~ 217 (299)
T PF05971_consen 140 ESARENVERNPN--LESRIELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKL 217 (299)
T ss_dssp HHHHHHHHHT-T---TTTEEEEE--ST-SSTTTSTT--S-EEEEEE-----SS---------------------------
T ss_pred HHHHHHHHhccc--cccceEEEEcCCccccchhhhcccceeeEEecCCccccChhhhcccccccccccccccccccCccc
Confidence 9999999986 4 3446777654 345545444468999999999998765432211111 14555
Q ss_pred cccccCC-------ChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 500 ALTDYSN-------GLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 500 al~~~~~-------gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
++.|... ...|+.++++++..+=..-.|+---+| ......+.+.|++.|-..+.+..-.+|...-.+--||
T Consensus 218 ~~~G~~~El~~~GGEv~FV~rMI~ES~~~~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~~~~~e~~QG~t~rw~lAWs 296 (299)
T PF05971_consen 218 NFTGQSNELWCEGGEVAFVKRMIKESLQLKDQVRWFTSMVGKKSSLKPLKKELKKLGATNYKVTEMCQGQTKRWILAWS 296 (299)
T ss_dssp -----TTTTHHHHTHHHHHHHHHHHHHHHGGGEEEEEEEESSGGGHHHHHHHHHHTT-SEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCCcceEEcCCccHHHHHHHHHHHHHhCCCcEEEeecccCcccHHHHHHHHHhcCCceEEEEEccCCceEEEEEEEe
Confidence 5544322 357899999998866544444433444 4678899999999998887777766777655554453
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-13 Score=128.74 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=104.9
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHH-HHHHHHH
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETE-LLVDLIV 391 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~-~l~~~~~ 391 (570)
+.++.++..++|+.|++.......+. ..|+ .++.+..+..|... .+++.+
T Consensus 22 ~~v~~a~~~v~R~~fvp~~~~~~ay~--------------d~~~--------------~~~~g~~~~~p~~~~~~~~~l- 72 (212)
T PRK13942 22 KKVIDALLKVPRHLFVPEYLEEYAYV--------------DTPL--------------EIGYGQTISAIHMVAIMCELL- 72 (212)
T ss_pred HHHHHHHHcCCHhhcCCchhhhcCcC--------------CCCc--------------cCCCCCEeCcHHHHHHHHHHc-
Confidence 56888899999999986433222111 1222 22223223333222 222222
Q ss_pred hhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 392 KKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 392 ~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
...++.+|||+|||||+++..+++......+|+|+|+++.+++.|++|+..++ -.+++++++|+...... ..+|
T Consensus 73 --~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---~~~v~~~~gd~~~~~~~-~~~f 146 (212)
T PRK13942 73 --DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---YDNVEVIVGDGTLGYEE-NAPY 146 (212)
T ss_pred --CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCCc-CCCc
Confidence 23567899999999999999999876445799999999999999999998642 23699999998765432 3689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
|+|+++-.. ..+...+.+.|+|||++++..+.
T Consensus 147 D~I~~~~~~-------------------------------~~~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 147 DRIYVTAAG-------------------------------PDIPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred CEEEECCCc-------------------------------ccchHHHHHhhCCCcEEEEEEcC
Confidence 999985211 11223455689999999987654
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.6e-12 Score=138.96 Aligned_cols=165 Identities=17% Similarity=0.185 Sum_probs=116.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCce
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLF 471 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~f 471 (570)
..++.+|||+|||+|..+..++....+.++|+|+|+++.+++.+++|+..++. .++.++++|+.+... ...++|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~~~~~~f 326 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---KSIKILAADSRNLLELKPQWRGYF 326 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---CeEEEEeCChhhcccccccccccC
Confidence 34678999999999999999998764457999999999999999999997532 258999999865431 223689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHH
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKL 543 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~l 543 (570)
|.|++|||....... +..|...+...... ......++..+.++|||||++++.+.. .+...+..+
T Consensus 327 D~Vl~DaPCSg~G~~-------~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~ 399 (434)
T PRK14901 327 DRILLDAPCSGLGTL-------HRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQF 399 (434)
T ss_pred CEEEEeCCCCccccc-------ccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHH
Confidence 999999996533221 12222111111111 123468999999999999999875432 445667778
Q ss_pred HHHC-CCeeEE----EEecCCCCceEEEEEe
Q psy2395 544 LFKY-GFSDIK----SWRDLSGIERVTQGKI 569 (570)
Q Consensus 544 l~~~-Gf~~i~----~~~D~~g~~R~~~~~~ 569 (570)
++++ +|.... ++++..|.+-|+++++
T Consensus 400 l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l 430 (434)
T PRK14901 400 LARHPDWKLEPPKQKIWPHRQDGDGFFMAVL 430 (434)
T ss_pred HHhCCCcEecCCCCccCCCCCCCCcEEEEEE
Confidence 8876 576442 5666678888988874
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-12 Score=131.71 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=107.5
Q ss_pred ecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC
Q psy2395 372 ITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY 449 (570)
Q Consensus 372 v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~ 449 (570)
++.+.+.|. +.+..++..+ ...++.+|||+|||+|..+..++... +++|+|+|+|+.+++.|+++...
T Consensus 28 ~g~~~~~~gg~~~~~~~l~~l---~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~----- 97 (263)
T PTZ00098 28 FGEDYISSGGIEATTKILSDI---ELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD----- 97 (263)
T ss_pred hCCCCCCCCchHHHHHHHHhC---CCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc-----
Confidence 345555555 3344444432 23567899999999999999998754 47999999999999999988752
Q ss_pred CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 450 NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 450 ~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
..++.+.++|+.+ .+.++++||+|+++..+... +......+++++.++|+|||.++
T Consensus 98 ~~~i~~~~~D~~~-~~~~~~~FD~V~s~~~l~h~-----------------------~~~d~~~~l~~i~r~LkPGG~lv 153 (263)
T PTZ00098 98 KNKIEFEANDILK-KDFPENTFDMIYSRDAILHL-----------------------SYADKKKLFEKCYKWLKPNGILL 153 (263)
T ss_pred CCceEEEECCccc-CCCCCCCeEEEEEhhhHHhC-----------------------CHHHHHHHHHHHHHHcCCCcEEE
Confidence 3469999999864 33334789999996432211 01234689999999999999998
Q ss_pred EEEcC----------------------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 530 IEHGY----------------------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 530 ~~~~~----------------------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+.... .....+.++++++||..+...
T Consensus 154 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 154 ITDYCADKIENWDEEFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred EEEeccccccCcHHHHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 74310 123567888899999988654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=2e-12 Score=131.35 Aligned_cols=132 Identities=21% Similarity=0.211 Sum_probs=100.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|..++.+++......+|+|+|+++.+++.|++|...++ -.+++++.+|+.+ ++..+++||+|+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---~~~v~~~~~d~~~-l~~~~~~fD~Vi 151 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---YTNVEFRLGEIEA-LPVADNSVDVII 151 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---CCCEEEEEcchhh-CCCCCCceeEEE
Confidence 467899999999999988877765445689999999999999999987642 1368999999854 443346899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-----------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH----------------------- 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~----------------------- 532 (570)
+|..+.... ....+++++.++|+|||++++.-
T Consensus 152 ~~~v~~~~~-------------------------d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (272)
T PRK11873 152 SNCVINLSP-------------------------DKERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVA 206 (272)
T ss_pred EcCcccCCC-------------------------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhcccc
Confidence 986443211 12578899999999999998731
Q ss_pred cCCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 533 GYNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 533 ~~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
+......+.+++.++||..+.+..
T Consensus 207 ~~~~~~e~~~~l~~aGf~~v~i~~ 230 (272)
T PRK11873 207 GALQEEEYLAMLAEAGFVDITIQP 230 (272)
T ss_pred CCCCHHHHHHHHHHCCCCceEEEe
Confidence 112345788899999999876643
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.6e-12 Score=134.62 Aligned_cols=183 Identities=15% Similarity=0.133 Sum_probs=120.4
Q ss_pred CCccccc-hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 374 SDVLIPR-PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 374 ~~~~~pr-~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
.|.+... ..+..++..+ . +.++.+|||+|||+|..+..++...+ .++|+|+|+++.+++.+++|+++++. ...
T Consensus 217 ~G~~~~Qd~~s~~~~~~L-~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~--~~~ 290 (426)
T TIGR00563 217 EGWVTVQDASAQWVATWL-A--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL--TIK 290 (426)
T ss_pred CCeEEEECHHHHHHHHHh-C--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC--CeE
Confidence 4444444 3343333333 2 35678999999999999999998775 57999999999999999999997532 223
Q ss_pred EEEEEcccccccc-cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCC----ChHHHHHHHHHHhhccccCeE
Q psy2395 453 IKFIKSNWYNNLQ-NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSN----GLSSIKEIVKNASKYLVKNGL 527 (570)
Q Consensus 453 v~~~~~D~~~~l~-~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~----gl~~~~~~l~~~~~~LkpgG~ 527 (570)
+.+..+|...... ...++||.|++|||+........ .|...+..... -......++..+.++|+|||.
T Consensus 291 v~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~-------~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~ 363 (426)
T TIGR00563 291 AETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRR-------HPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGT 363 (426)
T ss_pred EEEeccccccccccccccccCEEEEcCCCCCCccccc-------CcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 5557777754221 12367999999999876543321 22221111111 123457899999999999999
Q ss_pred EEEEEcC----CCHHHHHHHHHHCC-Cee-------------EEEEecCCCCceEEEEEe
Q psy2395 528 LLIEHGY----NQSNLVRKLLFKYG-FSD-------------IKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 528 l~~~~~~----~~~~~l~~ll~~~G-f~~-------------i~~~~D~~g~~R~~~~~~ 569 (570)
+++.+.. .+...+..++.+++ |.. ++++++..+.+-++++++
T Consensus 364 lvystcs~~~~Ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 423 (426)
T TIGR00563 364 LVYATCSVLPEENSEQIKAFLQEHPDFPFEKTGTPEQVRDGGLQILPHAEEGDGFFYAKL 423 (426)
T ss_pred EEEEeCCCChhhCHHHHHHHHHhCCCCeeccCCCccccCCCcEEECCCCCCCCCeEEEEE
Confidence 9886533 45666777777763 432 234555556677777764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.2e-12 Score=113.14 Aligned_cols=105 Identities=18% Similarity=0.208 Sum_probs=83.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++..+ ..+|+|+|+|+.+++.|++|+..++ ..+++++.+|+.........+||+|+
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~v~ 93 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFG---VSNIVIVEGDAPEALEDSLPEPDRVF 93 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhC---CCceEEEeccccccChhhcCCCCEEE
Confidence 4567999999999999999998875 4799999999999999999998642 22588999987543333236899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+..+. ..+..+++.+.+.|+|||++++.+
T Consensus 94 ~~~~~----------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 94 IGGSG----------------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ECCcc----------------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 95321 134688999999999999998753
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=137.95 Aligned_cols=170 Identities=22% Similarity=0.292 Sum_probs=112.6
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.|.+.....+..++..++. +.++.+|||+|||+|..+..++....+..+|+|+|+|+.+++.+++|+.+.+. .++
T Consensus 216 ~G~~~~Qd~~s~~~~~~l~--~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---~~v 290 (431)
T PRK14903 216 DGLATVQGESSQIVPLLME--LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---SSI 290 (431)
T ss_pred CCeEEEECHHHHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CeE
Confidence 3334333333344433332 35678999999999999999998764467999999999999999999987531 248
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh-HHHHHHHHHHhhccccCeEEEEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL-SSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl-~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.+.++|+........++||.|++|||+.........+....+.+...+ .++ ....+++..+.++|+|||.+++.+
T Consensus 291 ~~~~~Da~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYsT 366 (431)
T PRK14903 291 EIKIADAERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYST 366 (431)
T ss_pred EEEECchhhhhhhhhccCCEEEECCCCCCCccccCChHHHHhCCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 999999865322224689999999999765433222222111111100 111 245789999999999999998866
Q ss_pred cC----CCHHHHHHHHHHC-CCeeE
Q psy2395 533 GY----NQSNLVRKLLFKY-GFSDI 552 (570)
Q Consensus 533 ~~----~~~~~l~~ll~~~-Gf~~i 552 (570)
.. .+...+..++.++ +|..+
T Consensus 367 Cs~~~eEne~vv~~fl~~~~~~~~~ 391 (431)
T PRK14903 367 CTVTKEENTEVVKRFVYEQKDAEVI 391 (431)
T ss_pred CCCChhhCHHHHHHHHHhCCCcEEe
Confidence 44 3445566666654 46543
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=121.60 Aligned_cols=153 Identities=22% Similarity=0.223 Sum_probs=99.7
Q ss_pred cchhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCc--------EEEEEeCCHHHHHHHHHHHHhhcccC
Q psy2395 379 PRPETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKI--------EIIATDISKFALKIAKKNAKKKLTKY 449 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~--------~V~gvDis~~al~~A~~n~~~~~~~~ 449 (570)
|.+-.+.+...++... ..++..|||..||||.+.+..+....... +++|+|+++.+++.|+.|+...+ .
T Consensus 9 ~a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag--~ 86 (179)
T PF01170_consen 9 PAPLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG--V 86 (179)
T ss_dssp STSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT---
T ss_pred CCCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc--c
Confidence 3333444444444432 24677999999999999999987765322 38999999999999999998753 3
Q ss_pred CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 450 NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 450 ~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
...+.+.+.|+.+. +...+++|+||+||||...-.. ..+...+|..+++.+.+.|++ +.++
T Consensus 87 ~~~i~~~~~D~~~l-~~~~~~~d~IvtnPPyG~r~~~-----------------~~~~~~ly~~~~~~~~~~l~~-~~v~ 147 (179)
T PF01170_consen 87 EDYIDFIQWDAREL-PLPDGSVDAIVTNPPYGRRLGS-----------------KKDLEKLYRQFLRELKRVLKP-RAVF 147 (179)
T ss_dssp CGGEEEEE--GGGG-GGTTSBSCEEEEE--STTSHCH-----------------HHHHHHHHHHHHHHHHCHSTT-CEEE
T ss_pred CCceEEEecchhhc-ccccCCCCEEEECcchhhhccC-----------------HHHHHHHHHHHHHHHHHHCCC-CEEE
Confidence 44699999999663 3345799999999999853210 111246889999999999999 4455
Q ss_pred EEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 530 IEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 530 ~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
+..+.... .+.+...++.....+
T Consensus 148 l~~~~~~~---~~~~~~~~~~~~~~~ 170 (179)
T PF01170_consen 148 LTTSNREL---EKALGLKGWRKRKLY 170 (179)
T ss_dssp EEESCCCH---HHHHTSTTSEEEEEE
T ss_pred EEECCHHH---HHHhcchhhceEEEE
Confidence 55554443 455666677665544
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.8e-13 Score=125.92 Aligned_cols=142 Identities=24% Similarity=0.359 Sum_probs=97.9
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcC---CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTF---EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~---~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.|.|..+...++ ..-||.+..+-+.+...+. -.+.++||++||||.+++.++.++ ..+|+.||.|+.++...++
T Consensus 7 ~~kgr~l~~p~~-~~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~ 83 (183)
T PF03602_consen 7 KYKGRKLKTPKG-DNTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKK 83 (183)
T ss_dssp TTTT-EEE-TT---TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHH
T ss_pred ecCCCEecCCCC-CCcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHH
Confidence 455677766554 4456776666666555433 258899999999999999988877 4799999999999999999
Q ss_pred HHHhhcccCCCCEEEEEcccccccccC---CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 441 NAKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 441 n~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
|++..+ ...++.++++|+...+... ..+||+|++||||.... .+..+++.
T Consensus 84 N~~~l~--~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~-------------------------~~~~~l~~ 136 (183)
T PF03602_consen 84 NLEKLG--LEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL-------------------------YYEELLEL 136 (183)
T ss_dssp HHHHHT---GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH-------------------------HHHHHHHH
T ss_pred HHHHhC--CCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch-------------------------HHHHHHHH
Confidence 999753 2336899999987665432 47899999999997321 13555655
Q ss_pred Hh--hccccCeEEEEEEcCC
Q psy2395 518 AS--KYLVKNGLLLIEHGYN 535 (570)
Q Consensus 518 ~~--~~LkpgG~l~~~~~~~ 535 (570)
+. .+|+++|++++++...
T Consensus 137 l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 137 LAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHTTSEEEEEEEEEEEETT
T ss_pred HHHCCCCCCCEEEEEEecCC
Confidence 54 7899999999999664
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-12 Score=123.96 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=110.7
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+.++.++..+||+.|+......+.+.|.. .|+ ..+..+..|.....+-.++
T Consensus 18 ~~v~~A~~~vPRe~FVp~~~~~~AY~d~~------------lpi----------------~~gqtis~P~~vA~m~~~L- 68 (209)
T COG2518 18 ERVLKAFLAVPRELFVPAAYKHLAYEDRA------------LPI----------------GCGQTISAPHMVARMLQLL- 68 (209)
T ss_pred HHHHHHHHhCCHHhccCchhhcccccCCc------------ccC----------------CCCceecCcHHHHHHHHHh-
Confidence 67899999999999987655544443322 222 3444454443333222222
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
...++.+|||||||||+.+..||+.. .+|+++|+.++..+.|++|+...+. .+|.++++|....++. ..+||
T Consensus 69 -~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~---~nV~v~~gDG~~G~~~-~aPyD 140 (209)
T COG2518 69 -ELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY---ENVTVRHGDGSKGWPE-EAPYD 140 (209)
T ss_pred -CCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC---CceEEEECCcccCCCC-CCCcC
Confidence 24678999999999999999999886 3999999999999999999997532 1499999999887765 47999
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.|+.+--.- +..+.++ +.|++||++++-++.
T Consensus 141 ~I~Vtaaa~---------------------------~vP~~Ll----~QL~~gGrlv~PvG~ 171 (209)
T COG2518 141 RIIVTAAAP---------------------------EVPEALL----DQLKPGGRLVIPVGS 171 (209)
T ss_pred EEEEeeccC---------------------------CCCHHHH----HhcccCCEEEEEEcc
Confidence 999852110 0113344 489999999998884
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=126.16 Aligned_cols=138 Identities=12% Similarity=0.205 Sum_probs=96.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-------ccCC
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-------QNYK 468 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-------~~~~ 468 (570)
+++.+|||+|||+|.++..+++......+|+|||+++ + . ...++.++++|+.+.. ....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~-----~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------D-----PIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------c-----CCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 5678999999999999999998764457999999998 1 1 1124889999997631 1224
Q ss_pred CceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHH
Q psy2395 469 KLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFK 546 (570)
Q Consensus 469 ~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~ 546 (570)
++||+|++|+ |+...... ..+ + ........+++.+.++|+|||.+++.+ .......+...++
T Consensus 116 ~~~D~V~S~~~~~~~g~~~------~d~-~--------~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~- 179 (209)
T PRK11188 116 SKVQVVMSDMAPNMSGTPA------VDI-P--------RAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR- 179 (209)
T ss_pred CCCCEEecCCCCccCCChH------HHH-H--------HHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH-
Confidence 6899999996 44321100 000 0 001224678999999999999999844 4455555544443
Q ss_pred CCCeeEEEEecCCCCce
Q psy2395 547 YGFSDIKSWRDLSGIER 563 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~~R 563 (570)
..|..+++++|.++++|
T Consensus 180 ~~f~~v~~~Kp~ssr~~ 196 (209)
T PRK11188 180 SLFTKVKVRKPDSSRAR 196 (209)
T ss_pred hCceEEEEECCcccccc
Confidence 37999999999998875
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-12 Score=133.91 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=109.6
Q ss_pred eeeeecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 368 LVLNITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 368 ~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
..|.++|+.|.+. ..++.|++++.......+.+|||+|||+|.+++.+++.. .+|+|||+|+.|++.|++|+..|
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~ 251 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAAN 251 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHh
Confidence 5778888888776 468888888877653334579999999999999999764 48999999999999999999875
Q ss_pred cccCCCCEEEEEcccccccccC---------------CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHH
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNY---------------KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSS 510 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~---------------~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~ 510 (570)
+. .+++|+.+|+.+.+... ..+||+|+.|||+.- .
T Consensus 252 ~~---~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G---------------------------~ 301 (362)
T PRK05031 252 GI---DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG---------------------------L 301 (362)
T ss_pred CC---CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCC---------------------------C
Confidence 32 26999999997654321 125899999999731 1
Q ss_pred HHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 511 IKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 511 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++.+.+ +++++++++.+.....-...|.+ ||+..++.
T Consensus 302 ~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~~-gY~l~~v~ 342 (362)
T PRK05031 302 DDETLKLVQA---YERILYISCNPETLCENLETLSQ-THKVERFA 342 (362)
T ss_pred cHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHcC-CcEEEEEE
Confidence 1444544433 68889998877543333334444 88765443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.3e-12 Score=128.52 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=79.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++...+ +.+|+|+|+|+.|++.|+++ +++++++|+.+. . ..++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~----------~~~~~~~d~~~~-~-~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER----------GVDARTGDVRDW-K-PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc----------CCcEEEcChhhC-C-CCCCceEEE
Confidence 4678999999999999999998875 57999999999999999652 267899998653 2 247899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+|..++..+ ....+++++.+.|+|||.+++.+
T Consensus 95 ~~~~l~~~~-------------------------d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVP-------------------------EHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCC-------------------------CHHHHHHHHHHhCCCCcEEEEEc
Confidence 987654321 12678889999999999998754
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-12 Score=131.25 Aligned_cols=155 Identities=20% Similarity=0.211 Sum_probs=113.6
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
.|+.+-| ..++.++..+. ..++..|||..||||.+.+.+...+ ++++|+|++..|+.-|+.|++..+ -..
T Consensus 177 ~p~s~~P-~lAR~mVNLa~---v~~G~~vlDPFcGTGgiLiEagl~G---~~viG~Did~~mv~gak~Nl~~y~---i~~ 246 (347)
T COG1041 177 RPGSMDP-RLARAMVNLAR---VKRGELVLDPFCGTGGILIEAGLMG---ARVIGSDIDERMVRGAKINLEYYG---IED 246 (347)
T ss_pred CcCCcCH-HHHHHHHHHhc---cccCCEeecCcCCccHHHHhhhhcC---ceEeecchHHHHHhhhhhhhhhhC---cCc
Confidence 4555544 34555555542 3578899999999999999998654 799999999999999999999742 123
Q ss_pred EEEEEc-ccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 453 IKFIKS-NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 453 v~~~~~-D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
..+..+ |+.. ++..+.+||.|+++|||....... +..-.+.|.++++.+.+.|++||+++|.
T Consensus 247 ~~~~~~~Da~~-lpl~~~~vdaIatDPPYGrst~~~----------------~~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 247 YPVLKVLDATN-LPLRDNSVDAIATDPPYGRSTKIK----------------GEGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred eeEEEeccccc-CCCCCCccceEEecCCCCcccccc----------------cccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 555555 8854 444335699999999998654221 1111357899999999999999999998
Q ss_pred EcCCCHHHHHHHHHHCCCeeEEEEecC
Q psy2395 532 HGYNQSNLVRKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 532 ~~~~~~~~l~~ll~~~Gf~~i~~~~D~ 558 (570)
.+... ...+.+.||.++..+...
T Consensus 310 ~p~~~----~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 310 APRDP----RHELEELGFKVLGRFTMR 332 (347)
T ss_pred cCCcc----hhhHhhcCceEEEEEEEe
Confidence 87333 334567899998877765
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=122.65 Aligned_cols=141 Identities=16% Similarity=0.176 Sum_probs=100.7
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.+.+..+...++.. .||.+..+.+.+...+. -.+.+|||+|||||.+++.++.++. .+|++||+++.+++.+++|
T Consensus 15 ~~kg~~l~~p~~~~-~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N 91 (189)
T TIGR00095 15 WRGGRLLKLPPGGS-TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKEN 91 (189)
T ss_pred hhCCcccCCCCCCC-CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHH
Confidence 44566666655544 45666666655554432 2577999999999999999998763 5899999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccC---CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
+..++ ...+++++++|+++.+... ...||+|+.+|||... .+..+++.+
T Consensus 92 ~~~~~--~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~--------------------------~~~~~l~~l 143 (189)
T TIGR00095 92 LALLK--SGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNG--------------------------ALQALLELC 143 (189)
T ss_pred HHHhC--CcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCC--------------------------cHHHHHHHH
Confidence 99863 2336899999997654321 1248999999999632 112222222
Q ss_pred --hhccccCeEEEEEEcCC
Q psy2395 519 --SKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 519 --~~~LkpgG~l~~~~~~~ 535 (570)
..+|+++|.+++++...
T Consensus 144 ~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 144 ENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred HHCCCCCCCeEEEEEecCC
Confidence 35799999999988653
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-12 Score=125.67 Aligned_cols=109 Identities=14% Similarity=0.184 Sum_probs=83.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..++.+|||+|||+|.++..+++.+. ++++|+|+|+|+.|++.|++++...+ ...+++++++|+.+. +. ..+|+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~--~~~~v~~~~~d~~~~-~~--~~~d~ 125 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH--SEIPVEILCNDIRHV-EI--KNASM 125 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEECChhhC-CC--CCCCE
Confidence 35677999999999999999988642 36899999999999999999987531 234689999999653 32 45899
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+++-..+... ......+++++.+.|+|||.+++.
T Consensus 126 v~~~~~l~~~~-----------------------~~~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 126 VILNFTLQFLP-----------------------PEDRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred EeeecchhhCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEe
Confidence 99864322110 113467899999999999999875
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=120.44 Aligned_cols=140 Identities=16% Similarity=0.163 Sum_probs=100.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD 472 (570)
..++.+|||+|||+|.++..++...+ ..+|+|+|+++.|++.+.+++.. ..++.++.+|+..+. ....++||
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-----~~nv~~i~~D~~~~~~~~~l~~~~D 143 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-----RKNIIPILADARKPERYAHVVEKVD 143 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-----cCCcEEEECCCCCcchhhhccccCC
Confidence 35778999999999999999998875 56999999999999988888764 245889999986531 11235799
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------C----HHHHHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------Q----SNLVRK 542 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~----~~~l~~ 542 (570)
+|+++.+. | .....+++.+.++|||||.+++.++.. . .+...+
T Consensus 144 ~i~~d~~~----------------p-----------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~ 196 (226)
T PRK04266 144 VIYQDVAQ----------------P-----------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIR 196 (226)
T ss_pred EEEECCCC----------------h-----------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHH
Confidence 99986431 0 112456889999999999999853321 1 223568
Q ss_pred HHHHCCCeeEEEEecCCCC---ceEEEEE
Q psy2395 543 LLFKYGFSDIKSWRDLSGI---ERVTQGK 568 (570)
Q Consensus 543 ll~~~Gf~~i~~~~D~~g~---~R~~~~~ 568 (570)
.+.++||+.++.. |+... .-.++++
T Consensus 197 ~l~~aGF~~i~~~-~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 197 KLEEGGFEILEVV-DLEPYHKDHAAVVAR 224 (226)
T ss_pred HHHHcCCeEEEEE-cCCCCcCCeEEEEEE
Confidence 8999999988655 34333 4455554
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-11 Score=125.95 Aligned_cols=185 Identities=18% Similarity=0.167 Sum_probs=121.0
Q ss_pred eechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhH-HHHHHHHHhhc-CCCCCEEEEEC
Q psy2395 328 IINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPET-ELLVDLIVKKT-FEKKIKLLEMG 405 (570)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t-~~l~~~~~~~~-~~~~~~VLDlG 405 (570)
-+....+++..+.+.+...+.+.. |..+ | +| .+ .++.+|.... ......++..+ ..++.+|||+|
T Consensus 63 ~~~~~~~~~~~~~~~l~~~l~~l~---p~~~--~--~~-----~l-~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvG 129 (314)
T TIGR00452 63 CNDKSNPLSAGQIKRILEEIMALM---PWRK--G--PF-----EL-SGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVG 129 (314)
T ss_pred ccCCCCCCCHHHHHHHHHHHHhcC---CCCC--C--Cc-----cc-ccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEec
Confidence 345667788888888887765432 2221 1 11 11 2445555432 33334444433 24578999999
Q ss_pred CcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCC
Q psy2395 406 TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGD 485 (570)
Q Consensus 406 cGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~ 485 (570)
||+|.++..++..++ ..|+|+|.|+.++..++...... ....++.+..+++.+ ++. ..+||+|+|+--++...
T Consensus 130 CG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~-lp~-~~~FD~V~s~gvL~H~~- 202 (314)
T TIGR00452 130 CGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQ-LHE-LYAFDTVFSMGVLYHRK- 202 (314)
T ss_pred cCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHH-CCC-CCCcCEEEEcchhhccC-
Confidence 999999999887653 48999999999998754432211 123468888888744 332 25899999974322111
Q ss_pred cccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE----cCC--------------------CHHHHH
Q psy2395 486 IHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH----GYN--------------------QSNLVR 541 (570)
Q Consensus 486 ~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~----~~~--------------------~~~~l~ 541 (570)
....++.++++.|+|||.++++. +.. ....+.
T Consensus 203 ------------------------dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~ 258 (314)
T TIGR00452 203 ------------------------SPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALK 258 (314)
T ss_pred ------------------------CHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHH
Confidence 23578899999999999999752 110 245678
Q ss_pred HHHHHCCCeeEEEEe
Q psy2395 542 KLLFKYGFSDIKSWR 556 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~~ 556 (570)
.+++++||+.+++..
T Consensus 259 ~~L~~aGF~~V~i~~ 273 (314)
T TIGR00452 259 NWLEKVGFENFRILD 273 (314)
T ss_pred HHHHHCCCeEEEEEe
Confidence 899999999987653
|
Known examples to date are restricted to the proteobacteria. |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=132.07 Aligned_cols=128 Identities=15% Similarity=0.198 Sum_probs=97.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..+++. +++|+|||+++.+++.|+.++.... ...++.++++|+.+ ++..+++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~--~~~~i~~~~~dae~-l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDP--VTSTIEYLCTTAEK-LADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcC--cccceeEEecCHHH-hhhccCCCCEEEE
Confidence 4569999999999999999864 4799999999999999998876421 22369999999854 3433478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------------- 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 534 (570)
.-.+.. +.....+++.+.++|||||.+++.+..
T Consensus 205 ~~vLeH-------------------------v~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~ 259 (322)
T PLN02396 205 LEVIEH-------------------------VANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPK 259 (322)
T ss_pred hhHHHh-------------------------cCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCC
Confidence 432111 112367899999999999999875421
Q ss_pred --------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 --------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 --------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++..+++++||..+.+.
T Consensus 260 gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 260 GTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred CCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 125788999999999987763
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.2e-12 Score=122.11 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=93.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|++++..++ -.++++.++|+.+. +. .++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~---~~~v~~~~~d~~~~-~~-~~~fD~I~~ 101 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAEN---LDNLHTAVVDLNNL-TF-DGEYDFILS 101 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcC---CCcceEEecChhhC-Cc-CCCcCEEEE
Confidence 4679999999999999999975 3699999999999999999987642 12488999998653 22 367999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--cC------------CCHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GY------------NQSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~------------~~~~~l~~ 542 (570)
+..++..+ .+....+++.+.+.|+|||.+++.. .. ...+++.+
T Consensus 102 ~~~~~~~~-----------------------~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 158 (197)
T PRK11207 102 TVVLMFLE-----------------------AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRR 158 (197)
T ss_pred ecchhhCC-----------------------HHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHHH
Confidence 76532110 1235789999999999999965432 10 12455677
Q ss_pred HHHHCCCeeEEEEe
Q psy2395 543 LLFKYGFSDIKSWR 556 (570)
Q Consensus 543 ll~~~Gf~~i~~~~ 556 (570)
++. ||..+....
T Consensus 159 ~~~--~~~~~~~~~ 170 (197)
T PRK11207 159 YYE--GWEMVKYNE 170 (197)
T ss_pred HhC--CCeEEEeeC
Confidence 775 898876643
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-12 Score=126.21 Aligned_cols=106 Identities=16% Similarity=0.311 Sum_probs=84.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||-|.++..+|+.+ +.|+|+|+++.+++.|+..+.. .+..+.+.+..+.+ +....++||+|+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e----~gv~i~y~~~~~ed-l~~~~~~FDvV~c 130 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALE----SGVNIDYRQATVED-LASAGGQFDVVTC 130 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhh----ccccccchhhhHHH-HHhcCCCccEEEE
Confidence 67899999999999999999875 7999999999999999999987 35557788887755 3333479999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
.- ++.|- .....++..+.+++||||.+++.+...
T Consensus 131 mE-------------VlEHv------------~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 131 ME-------------VLEHV------------PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred hh-------------HHHcc------------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 42 22221 133679999999999999999876543
|
|
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.1e-12 Score=122.01 Aligned_cols=141 Identities=21% Similarity=0.291 Sum_probs=101.5
Q ss_pred HHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCC-----CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 386 LVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKN-----KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 386 l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~-----~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
+-+..+..+ +.++.++||+|||||-++..+.+.... ..+|+.+||||.|++.+++.+.+..+....++.|+++|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540|consen 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCC
Confidence 334443333 346789999999999999999887642 27999999999999999999976433333459999999
Q ss_pred cccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCCHH
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQSN 538 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~ 538 (570)
+ +.++.++.+||...+-- . -.....+.+.+++++|+|||||++++ +++....+
T Consensus 168 A-E~LpFdd~s~D~yTiaf--G-----------------------IRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~ 221 (296)
T KOG1540|consen 168 A-EDLPFDDDSFDAYTIAF--G-----------------------IRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENE 221 (296)
T ss_pred c-ccCCCCCCcceeEEEec--c-----------------------eecCCCHHHHHHHHHHhcCCCcEEEEEEccccccH
Confidence 9 44777778999988721 1 01122458999999999999999864 66655555
Q ss_pred HHHHHHHHCCCeeE
Q psy2395 539 LVRKLLFKYGFSDI 552 (570)
Q Consensus 539 ~l~~ll~~~Gf~~i 552 (570)
.+..+....-|.++
T Consensus 222 ~l~~fy~~ysf~Vl 235 (296)
T KOG1540|consen 222 PLKWFYDQYSFDVL 235 (296)
T ss_pred HHHHHHHhhhhhhh
Confidence 55555555445544
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=119.40 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=92.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.+++.+++..+ +.+|+|+|+|+.+++.|++|+..++. .+++++.+|+.+.+......+|.++
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~---~~v~~~~~d~~~~~~~~~~~~d~v~ 114 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGV---KNVEVIEGSAPECLAQLAPAPDRVC 114 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---CCeEEEECchHHHHhhCCCCCCEEE
Confidence 4678999999999999999987765 57999999999999999999987531 3589999998653332223456665
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHC---CCee
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKY---GFSD 551 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~---Gf~~ 551 (570)
.+.. ..+..+++.+.+.|+|||.+++..... ....+.+.+.+. ++..
T Consensus 115 ~~~~-----------------------------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (196)
T PRK07402 115 IEGG-----------------------------RPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEV 165 (196)
T ss_pred EECC-----------------------------cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceE
Confidence 5210 123678899999999999998876543 334456666654 5566
Q ss_pred EEE
Q psy2395 552 IKS 554 (570)
Q Consensus 552 i~~ 554 (570)
+++
T Consensus 166 ~~~ 168 (196)
T PRK07402 166 VQA 168 (196)
T ss_pred EEE
Confidence 554
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-12 Score=121.86 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=105.6
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+.+++++..++|+.|++......++. +..+.++.+..+..|.....+-.++.
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~aY~----------------------------d~~l~i~~~~~is~P~~~a~~l~~L~ 69 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLAYE----------------------------DRPLPIGCGQTISAPSMVARMLEALD 69 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGTTS----------------------------SS-EEEETTEEE--HHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHhCchhhhcCCCC----------------------------CCCeeecceeechHHHHHHHHHHHHh
Confidence 56888999999999987644433332 33333344555555543332222222
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.+++.+|||+|||||+.+..++....+...|+++|+++..++.|++|+...+ -.++.++++|....++. ..+||
T Consensus 70 --l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~---~~nv~~~~gdg~~g~~~-~apfD 143 (209)
T PF01135_consen 70 --LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLG---IDNVEVVVGDGSEGWPE-EAPFD 143 (209)
T ss_dssp --C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHT---THSEEEEES-GGGTTGG-G-SEE
T ss_pred --cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhc---cCceeEEEcchhhcccc-CCCcC
Confidence 4678999999999999999999887555689999999999999999999753 22699999999877654 46899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.|+++...-. .... ..+.|++||++++.++.
T Consensus 144 ~I~v~~a~~~---------------------------ip~~----l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 144 RIIVTAAVPE---------------------------IPEA----LLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp EEEESSBBSS-----------------------------HH----HHHTEEEEEEEEEEESS
T ss_pred EEEEeeccch---------------------------HHHH----HHHhcCCCcEEEEEEcc
Confidence 9999643210 1133 44489999999987764
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-11 Score=119.86 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=110.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++..++...+++++|+++.+++.+++++..++ ...++.++.+|+.+. +...++||+|++
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~-~~~~~~~D~I~~ 127 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLG--LSGNVEFVQGDAEAL-PFPDNSFDAVTI 127 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccc--cccCeEEEecccccC-CCCCCCccEEEE
Confidence 56799999999999999999887535899999999999999999986531 234689999998653 233468999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcC--C------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGY--N------------------ 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~--~------------------ 535 (570)
+--.... .....++..+.+.|+|||.+++. ... .
T Consensus 128 ~~~l~~~-------------------------~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (239)
T PRK00216 128 AFGLRNV-------------------------PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLI 182 (239)
T ss_pred ecccccC-------------------------CCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHH
Confidence 5322111 12367888999999999998763 211 1
Q ss_pred ----------------------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 536 ----------------------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 536 ----------------------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
....+..++.++||..+.+.....|.--+++|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 183 GKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 12457788999999999999888888888888753
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.6e-12 Score=122.99 Aligned_cols=125 Identities=14% Similarity=0.184 Sum_probs=91.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.+++++..+ +.++.+..+|+.. .+. .++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~-~~~-~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARE----NLPLRTDAYDINA-AAL-NEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHh----CCCceeEeccchh-ccc-cCCCCEEEE
Confidence 4679999999999999999975 369999999999999999988753 3457788888743 222 357999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-------cC-------CCHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-------GY-------NQSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-------~~-------~~~~~l~~ 542 (570)
+.+|+..+ ......+++.+.++|+|||++++.. +. ....++.+
T Consensus 101 ~~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~~~~~~~el~~ 157 (195)
T TIGR00477 101 TVVFMFLQ-----------------------AGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPFSFTFKEDELRQ 157 (195)
T ss_pred ecccccCC-----------------------HHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCcCccCCHHHHHH
Confidence 88765321 1244688999999999999965532 10 12456666
Q ss_pred HHHHCCCeeEEEE
Q psy2395 543 LLFKYGFSDIKSW 555 (570)
Q Consensus 543 ll~~~Gf~~i~~~ 555 (570)
++. +|.++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 665 57776544
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-12 Score=126.25 Aligned_cols=109 Identities=15% Similarity=0.186 Sum_probs=84.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..++.+|||+|||+|..+..+++.. .++++|+|+|+|+.|++.|++++..++ ...+++++++|+.+. +. ..+|+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~--~~~~v~~~~~d~~~~-~~--~~~D~ 128 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRDI-AI--ENASM 128 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC--CCCCeEEEeCChhhC-CC--CCCCE
Confidence 4567899999999999999988742 236899999999999999999997642 234699999998653 32 45999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|++|..++..+ .+....+++++++.|+|||.+++.
T Consensus 129 vv~~~~l~~l~-----------------------~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 129 VVLNFTLQFLE-----------------------PSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred EehhhHHHhCC-----------------------HHHHHHHHHHHHHhcCCCCEEEEE
Confidence 99986543211 012367899999999999999874
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.7e-12 Score=122.76 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=107.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|+|.|+|||.++.+||+...+..+|+.+|+.++.++.|++|++..+ ...++++..+|+.+.... ..||+|
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~--l~d~v~~~~~Dv~~~~~~--~~vDav 167 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFG--LGDRVTLKLGDVREGIDE--EDVDAV 167 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhc--cccceEEEeccccccccc--cccCEE
Confidence 3578999999999999999999866556899999999999999999999863 444599999999876654 489999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~ 553 (570)
+.+.| +| -.+++.+.+.|+|||.+++..|. +|...+.+.|++.||..++
T Consensus 168 ~LDmp----------------~P--------------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 168 FLDLP----------------DP--------------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred EEcCC----------------Ch--------------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 99865 12 46788889999999999988775 7889999999999998876
Q ss_pred EEe
Q psy2395 554 SWR 556 (570)
Q Consensus 554 ~~~ 556 (570)
.+.
T Consensus 218 ~~E 220 (256)
T COG2519 218 AVE 220 (256)
T ss_pred hhe
Confidence 554
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=126.19 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=82.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++...+ +.+|+|+|+|+.+++.|+++.. ++.++.+|+.+..+ ..+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~~--------~~~~~~~d~~~~~~--~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRLP--------DCQFVEADIASWQP--PQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhCC--------CCeEEECchhccCC--CCCccEEE
Confidence 4578999999999999999998875 5799999999999999987743 37899999865432 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+|..+.... ....+++.+.+.|+|||.+++.++
T Consensus 99 ~~~~l~~~~-------------------------d~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLP-------------------------DHLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCC-------------------------CHHHHHHHHHHhcCCCcEEEEECC
Confidence 987654221 236788999999999999988654
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.7e-11 Score=116.98 Aligned_cols=143 Identities=20% Similarity=0.283 Sum_probs=109.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++...+++|+|+++.+++.++++.. ...++.++.+|+.+. +...++||+|+
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-----~~~~i~~~~~d~~~~-~~~~~~~D~i~ 111 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-----LPLNIEFIQADAEAL-PFEDNSFDAVT 111 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-----cCCCceEEecchhcC-CCCCCcEEEEE
Confidence 367899999999999999999887533689999999999999998875 234688999999663 33346899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cC------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GY------------------ 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~------------------ 534 (570)
++-.+... .....+++.+.+.|+|||++++.. +.
T Consensus 112 ~~~~~~~~-------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (223)
T TIGR01934 112 IAFGLRNV-------------------------TDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPS 166 (223)
T ss_pred EeeeeCCc-------------------------ccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhh
Confidence 85332211 124678899999999999987632 11
Q ss_pred ----------------------CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 535 ----------------------NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 535 ----------------------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
...+.+..++.++||..+.+.+...|...+++|+.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 167 IGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 02345788899999999999988888888888863
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.7e-11 Score=118.74 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=101.5
Q ss_pred HHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 384 ELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 384 ~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
..+.+.++... ..++.+|||+|||+|.++..++....+..+++|+|+|+.+++.|+++... ...++.+..+|+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~----~~~~~~~~~~d~~~ 80 (241)
T PRK08317 5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG----LGPNVEFVRGDADG 80 (241)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC----CCCceEEEeccccc
Confidence 33444444432 24678999999999999999998763357999999999999999998432 34568999999854
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-------
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------- 535 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------- 535 (570)
.+...++||+|+++-.+... .....+++.+.+.|+|||++++..+..
T Consensus 81 -~~~~~~~~D~v~~~~~~~~~-------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~ 134 (241)
T PRK08317 81 -LPFPDGSFDAVRSDRVLQHL-------------------------EDPARALAEIARVLRPGGRVVVLDTDWDTLVWHS 134 (241)
T ss_pred -CCCCCCCceEEEEechhhcc-------------------------CCHHHHHHHHHHHhcCCcEEEEEecCCCceeecC
Confidence 23334789999996443211 123678889999999999998754210
Q ss_pred ---------------------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ---------------------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ---------------------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
....+.+++.++||..+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 175 (241)
T PRK08317 135 GDRALMRKILNFWSDHFADPWLGRRLPGLFREAGLTDIEVE 175 (241)
T ss_pred CChHHHHHHHHHHHhcCCCCcHHHHHHHHHHHcCCCceeEE
Confidence 02356778889999876543
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=129.38 Aligned_cols=119 Identities=20% Similarity=0.284 Sum_probs=95.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC---CceeEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK---KLFNII 474 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~fD~I 474 (570)
+.+|||++|-||.+++.+|..+ ..+|++||+|..+++.|++|+..|+. ...++.|+++|+++.+.... .+||+|
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~-~~~~~~~i~~Dvf~~l~~~~~~g~~fDlI 294 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGL-DGDRHRFIVGDVFKWLRKAERRGEKFDLI 294 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCC-CccceeeehhhHHHHHHHHHhcCCcccEE
Confidence 8899999999999999999765 35999999999999999999998753 23458999999998776443 489999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
|.|||-+...... ..+....|..++..+.++|+|||.+++.....
T Consensus 295 ilDPPsF~r~k~~----------------~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 295 ILDPPSFARSKKQ----------------EFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred EECCcccccCccc----------------chhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 9999955432110 01334678899999999999999998866543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=121.25 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=97.5
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|||+|||+|..+..+++.++ +.+|+|+|+|+.+++.|++++...+ ...+++++.+|+.+. +. .++||+|+++-
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~g--l~~~i~~~~~d~~~~-~~-~~~fD~I~~~~ 75 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALG--LQGRIRIFYRDSAKD-PF-PDTYDLVFGFE 75 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEecccccC-CC-CCCCCEeehHH
Confidence 3799999999999999998875 5799999999999999999987642 344689999998554 22 36899999843
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------CCHHHHHH
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----------------NQSNLVRK 542 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~l~~ 542 (570)
.+... .....+++.+.++|+|||++++.... .....+.+
T Consensus 76 ~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 130 (224)
T smart00828 76 VIHHI-------------------------KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAE 130 (224)
T ss_pred HHHhC-------------------------CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHH
Confidence 22111 12368899999999999999874321 12456788
Q ss_pred HHHHCCCeeEEEEe
Q psy2395 543 LLFKYGFSDIKSWR 556 (570)
Q Consensus 543 ll~~~Gf~~i~~~~ 556 (570)
++.+.||..++...
T Consensus 131 ~l~~~Gf~~~~~~~ 144 (224)
T smart00828 131 LLARNNLRVVEGVD 144 (224)
T ss_pred HHHHCCCeEEEeEE
Confidence 99999999876553
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.7e-12 Score=105.77 Aligned_cols=95 Identities=24% Similarity=0.340 Sum_probs=74.4
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYI 481 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~ 481 (570)
||+|||+|..+..+++. + +.+|+|+|+|+.+++.++++... ..+.+.++|+.+ ++.++++||+|+++--+.
T Consensus 1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~-l~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAED-LPFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTS-SSS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHh-Ccccccccccccccccee
Confidence 79999999999999988 2 58999999999999999998763 246699999865 466678999999953322
Q ss_pred CCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 482 PKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 482 ~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
. ++....+++++.+.|||||++++
T Consensus 72 ~-------------------------~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 H-------------------------LEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp G-------------------------SSHHHHHHHHHHHHEEEEEEEEE
T ss_pred e-------------------------ccCHHHHHHHHHHHcCcCeEEeC
Confidence 1 12458999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=124.13 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=78.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++... ..++++|+.+ ++..+++||+|++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~~--------~~~~~~d~~~-~~~~~~~fD~V~s 109 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDAA--------DHYLAGDIES-LPLATATFDLAWS 109 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCCC--------CCEEEcCccc-CcCCCCcEEEEEE
Confidence 4679999999999999988764 46899999999999999887531 4688999854 4444578999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
|.++.... ....++.++.++|+|||.+++..
T Consensus 110 ~~~l~~~~-------------------------d~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 110 NLAVQWCG-------------------------NLSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred CchhhhcC-------------------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 87654221 23678899999999999998864
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=122.34 Aligned_cols=117 Identities=21% Similarity=0.261 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
+..++..+... .++.+|||+|||+|+.++.++...+.+.+|+++|+++++++.|++|+..++ ...+++++.+|+.+
T Consensus 56 ~g~~L~~l~~~--~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~g--l~~~i~~~~gda~~ 131 (234)
T PLN02781 56 EGLFLSMLVKI--MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAG--VDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHHH--hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEccHHH
Confidence 33344444443 256799999999999999998876656899999999999999999999864 34579999999987
Q ss_pred ccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 463 NLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 463 ~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.++.. .++||+|+.|.+- ..|..+++.+.++|+|||.+++.
T Consensus 132 ~L~~l~~~~~~~~fD~VfiDa~k----------------------------~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 132 ALDQLLNNDPKPEFDFAFVDADK----------------------------PNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred HHHHHHhCCCCCCCCEEEECCCH----------------------------HHHHHHHHHHHHhcCCCeEEEEE
Confidence 65421 3689999997431 24567788889999999998863
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=128.60 Aligned_cols=165 Identities=24% Similarity=0.292 Sum_probs=101.8
Q ss_pred CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhc------CCCcEEEEEeCCHHHHHHHHHHHHhhccc
Q psy2395 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYS------KNKIEIIATDISKFALKIAKKNAKKKLTK 448 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~------~~~~~V~gvDis~~al~~A~~n~~~~~~~ 448 (570)
.+|+|+..+..|+.++. ..++.+|+|.+||+|.+.+.+.+.. ....+++|+|+++.++.+|+.|+..++..
T Consensus 27 ~~~TP~~i~~l~~~~~~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLN---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp GC---HHHHHHHHHHHT---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred eeehHHHHHHHHHhhhh---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 35789888888888872 3456689999999999999887642 12579999999999999999998754321
Q ss_pred CCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcc-cCCCCccccccccccccCCChHHHHHHHHHHhhccccCe
Q psy2395 449 YNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIH-LNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG 526 (570)
Q Consensus 449 ~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~-~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG 526 (570)
.....+..+|.+...... ..+||+|++||||....... ......+|... .......+ ..++..+.+.|++||
T Consensus 104 -~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~Fi~~~l~~Lk~~G 177 (311)
T PF02384_consen 104 -NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAE--YAFIEHALSLLKPGG 177 (311)
T ss_dssp -CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHH--HHHHHHHHHTEEEEE
T ss_pred -cccccccccccccccccccccccccccCCCCcccccccccccccccccccc---CCCccchh--hhhHHHHHhhccccc
Confidence 123568899987644332 36899999999998762211 11111122111 11111222 347888889999999
Q ss_pred EEEEEEcCC------CHHHHHHHHHHCC
Q psy2395 527 LLLIEHGYN------QSNLVRKLLFKYG 548 (570)
Q Consensus 527 ~l~~~~~~~------~~~~l~~ll~~~G 548 (570)
.+.++++.. ....+++.|.+.+
T Consensus 178 ~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 178 RAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred ceeEEecchhhhccchHHHHHHHHHhhc
Confidence 998877642 2356777776544
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-11 Score=124.28 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=93.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|..++.++.. +.+|+|+|+|+.+++.+++++..+ +.++++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~----~l~v~~~~~D~~~~~~--~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKE----NLNIRTGLYDINSASI--QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHc----CCceEEEEechhcccc--cCCccEEEE
Confidence 3459999999999999999975 369999999999999999998863 4468888999855322 478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------------CCHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------NQSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------~~~~~l~~ 542 (570)
+..++..+ .+....+++.+.++|+|||++++.... ....++.+
T Consensus 191 ~~vl~~l~-----------------------~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p~~~~~~~~el~~ 247 (287)
T PRK12335 191 TVVLMFLN-----------------------RERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMPFSFTFKEGELKD 247 (287)
T ss_pred cchhhhCC-----------------------HHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCCCCcccCHHHHHH
Confidence 76543111 124578899999999999997654311 12456777
Q ss_pred HHHHCCCeeEEEE
Q psy2395 543 LLFKYGFSDIKSW 555 (570)
Q Consensus 543 ll~~~Gf~~i~~~ 555 (570)
++. +|.++...
T Consensus 248 ~~~--~~~i~~~~ 258 (287)
T PRK12335 248 YYQ--DWEIVKYN 258 (287)
T ss_pred HhC--CCEEEEEe
Confidence 775 48877653
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-12 Score=109.14 Aligned_cols=98 Identities=20% Similarity=0.358 Sum_probs=73.9
Q ss_pred EEEECCcccHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC-
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKN--KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN- 477 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~--~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N- 477 (570)
|||+|||+|..+..++..++. ..+++|+|+|+.|++.++++... .+.+++|+++|+.+ ++...++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~----~~~~~~~~~~D~~~-l~~~~~~~D~v~~~~ 75 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSE----DGPKVRFVQADARD-LPFSDGKFDLVVCSG 75 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHH----TTTTSEEEESCTTC-HHHHSSSEEEEEE-T
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchh----cCCceEEEECCHhH-CcccCCCeeEEEEcC
Confidence 799999999999999987622 37999999999999999999875 34479999999966 55445799999993
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCe
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG 526 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG 526 (570)
..+... .-+....+++.+.++|+|||
T Consensus 76 ~~~~~~-----------------------~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 76 LSLHHL-----------------------SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp TGGGGS-----------------------SHHHHHHHHHHHHHTEEEEE
T ss_pred CccCCC-----------------------CHHHHHHHHHHHHHHhCCCC
Confidence 211100 11356889999999999998
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=3e-11 Score=110.98 Aligned_cols=154 Identities=16% Similarity=0.256 Sum_probs=108.0
Q ss_pred hHHHHHHHHHhhcC----C-CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 382 ETELLVDLIVKKTF----E-KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 382 ~t~~l~~~~~~~~~----~-~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
..+.+++|+..... . ...+|||+|||+|.+...|++.+- ....+|||.|+.++++|+..+++.+ ....|+|.
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~--~~n~I~f~ 123 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDG--FSNEIRFQ 123 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcC--CCcceeEE
Confidence 34567777766532 2 334999999999999999998875 3569999999999999988887643 33349999
Q ss_pred EcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
+.|++++ ....++||+|+--..|-... +.+ + +..+. ....+..+.+.|+|||++++...+..
T Consensus 124 q~DI~~~-~~~~~qfdlvlDKGT~DAis---Ls~-d-----------~~~~r--~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 124 QLDITDP-DFLSGQFDLVLDKGTLDAIS---LSP-D-----------GPVGR--LVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred EeeccCC-cccccceeEEeecCceeeee---cCC-C-----------Ccccc--eeeehhhHhhccCCCcEEEEEecCcc
Confidence 9999886 33347899988643332100 000 0 00110 02234455678999999999888888
Q ss_pred HHHHHHHHHHCCCeeEEEEe
Q psy2395 537 SNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 537 ~~~l~~ll~~~Gf~~i~~~~ 556 (570)
..++.+.+...||......+
T Consensus 186 ~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 186 KDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred HHHHHHHHhcCCeEEEEeec
Confidence 89999999998888765554
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.2e-11 Score=125.18 Aligned_cols=151 Identities=17% Similarity=0.139 Sum_probs=106.9
Q ss_pred eeeeecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 368 LVLNITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 368 ~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
..|.++++.|.+. ..++.|++++.+.....+.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|++|+..|
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~ 242 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAAN 242 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHc
Confidence 5788888888754 356788888877653233579999999999999999765 48999999999999999999975
Q ss_pred cccCCCCEEEEEcccccccccC---------C------CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHH
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNY---------K------KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSS 510 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~---------~------~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~ 510 (570)
+. .+++|+++|+.+.+... . ..||+|+.|||.. | .
T Consensus 243 ~~---~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~-------------------------G--~ 292 (353)
T TIGR02143 243 NI---DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA-------------------------G--L 292 (353)
T ss_pred CC---CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCC-------------------------C--C
Confidence 32 25999999997654320 1 2389999999942 1 1
Q ss_pred HHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 511 IKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 511 ~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++.+. +|++++|+++.+.....-...|.+ ||+..++.
T Consensus 293 ~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~~-~Y~l~~v~ 333 (353)
T TIGR02143 293 DPDTCKLVQ---AYERILYISCNPETLKANLEQLSE-THRVERFA 333 (353)
T ss_pred cHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHHhc-CcEEEEEE
Confidence 134444443 378999998877554433344443 47664443
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-11 Score=114.79 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=78.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|+++..+++.. .+|+++|+++.+++.|++|+..++ -.++++..+|+.+.++. .++||+|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~fD~I~ 149 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLG---LHNVSVRHGDGWKGWPA-YAPFDRIL 149 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCC---CCceEEEECCcccCCCc-CCCcCEEE
Confidence 467899999999999999888764 389999999999999999998742 12499999998765442 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++.+.. .+.+.+.+.|+|||.+++.++
T Consensus 150 ~~~~~~-------------------------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 150 VTAAAP-------------------------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred EccCch-------------------------------hhhHHHHHhcCCCcEEEEEEc
Confidence 975321 122345678999999998776
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.1e-11 Score=112.01 Aligned_cols=144 Identities=18% Similarity=0.313 Sum_probs=105.5
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcCC---CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTFE---KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~---~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.|.|..+.+.++ -.-||.+..+-+.+...+.+ .+.++||+++|||.+++..+.++ ...++.||.|..++...++
T Consensus 8 ~~kgr~L~~p~~-~~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~ 84 (187)
T COG0742 8 KYKGRKLKTPDG-PGTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKE 84 (187)
T ss_pred cccCCcccCCCC-CCcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHH
Confidence 455666666554 33567777777776665432 57899999999999999999887 5799999999999999999
Q ss_pred HHHhhcccCCCCEEEEEcccccccccCCC--ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH--
Q psy2395 441 NAKKKLTKYNIPIKFIKSNWYNNLQNYKK--LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK-- 516 (570)
Q Consensus 441 n~~~~~~~~~~~v~~~~~D~~~~l~~~~~--~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~-- 516 (570)
|++.. +...++.++..|+...+..... +||+|+.||||... +-.....+.
T Consensus 85 N~~~l--~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~------------------------l~~~~~~~~~~ 138 (187)
T COG0742 85 NLKAL--GLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKG------------------------LLDKELALLLL 138 (187)
T ss_pred HHHHh--CCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccc------------------------hhhHHHHHHHH
Confidence 99863 2335799999999865544444 49999999999721 110011111
Q ss_pred HHhhccccCeEEEEEEcCCC
Q psy2395 517 NASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~~~ 536 (570)
.-...|+|+|.++++.....
T Consensus 139 ~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 139 EENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred HhcCCcCCCcEEEEEeCCCc
Confidence 23567999999999987653
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.4e-11 Score=121.71 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=94.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.+|||+|||+|.++..++..++ ..|+|+|.|+.++..++...... ....++.++.+|+.+ ++. .++||+|+|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~--~~~~~i~~~~~d~e~-lp~-~~~FD~V~s 195 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLL--GNDQRAHLLPLGIEQ-LPA-LKAFDTVFS 195 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEeCCHHH-CCC-cCCcCEEEE
Confidence 567999999999999999998763 47999999999987655433321 123469999999854 443 578999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cC-------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GY------------------- 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~------------------- 534 (570)
+--.+.. .....+++.+++.|+|||.++++. ..
T Consensus 196 ~~vl~H~-------------------------~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~ 250 (322)
T PRK15068 196 MGVLYHR-------------------------RSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY 250 (322)
T ss_pred CChhhcc-------------------------CCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence 5321111 123678899999999999998752 10
Q ss_pred --CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 --NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 --~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+..+|.++||+.+++..
T Consensus 251 ~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 251 FIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred eCCCHHHHHHHHHHcCCceEEEEe
Confidence 0245688999999999987763
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-12 Score=117.93 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=87.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
....+|.|+|||+|+.+..|++++| .+.|+|+|-|++|++.|+.... +++|..+|+.+..+ ..++|+++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp--------~~~f~~aDl~~w~p--~~~~dllf 97 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLP--------DATFEEADLRTWKP--EQPTDLLF 97 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCC--------CCceecccHhhcCC--CCccchhh
Confidence 4677999999999999999999997 7999999999999999965543 48999999966444 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL 539 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 539 (570)
+|..+..-+ .+..++......|.|||.+.+.++.+..+.
T Consensus 98 aNAvlqWlp-------------------------dH~~ll~rL~~~L~Pgg~LAVQmPdN~dep 136 (257)
T COG4106 98 ANAVLQWLP-------------------------DHPELLPRLVSQLAPGGVLAVQMPDNLDEP 136 (257)
T ss_pred hhhhhhhcc-------------------------ccHHHHHHHHHhhCCCceEEEECCCccCch
Confidence 997554221 225677777789999999999998765443
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1e-10 Score=119.37 Aligned_cols=136 Identities=16% Similarity=0.315 Sum_probs=96.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc--CCCCEEEEEcccccccccCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK--YNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
+++.+||++|||+|.++..+++.. ...+|++||+|+.+++.|++++...... .+.+++++.+|+...+....++||+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv 153 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV 153 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence 456799999999999999998753 2468999999999999999988643111 2457999999998766544578999
Q ss_pred EEECC--CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHHH---HHHHH
Q psy2395 474 IVANP--PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLVR---KLLFK 546 (570)
Q Consensus 474 Iv~NP--Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l~---~ll~~ 546 (570)
|++|. |+.+.. .+ .-..+++.+.+.|+|||.+++..+. .....+. +.+++
T Consensus 154 Ii~D~~dp~~~~~----------------------~l-~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~ 210 (283)
T PRK00811 154 IIVDSTDPVGPAE----------------------GL-FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKE 210 (283)
T ss_pred EEECCCCCCCchh----------------------hh-hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 99984 432110 00 2367888899999999999885432 2333333 33444
Q ss_pred CCCeeEEEEe
Q psy2395 547 YGFSDIKSWR 556 (570)
Q Consensus 547 ~Gf~~i~~~~ 556 (570)
. |..+..+.
T Consensus 211 ~-F~~v~~~~ 219 (283)
T PRK00811 211 V-FPIVRPYQ 219 (283)
T ss_pred H-CCCEEEEE
Confidence 3 66665554
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.28 E-value=4e-11 Score=115.00 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=94.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-------ccCC
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-------QNYK 468 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-------~~~~ 468 (570)
.++.+|||+|||+|.++..++.......+|+|+|+|+.+ . ..++.++++|+.+.. ....
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~------~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P------IENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c------CCCceEEEeeCCChhHHHHHHHHhCC
Confidence 567899999999999999998876445789999999964 1 123778888886521 1123
Q ss_pred CceeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHH
Q psy2395 469 KLFNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLF 545 (570)
Q Consensus 469 ~~fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~ 545 (570)
++||+|++|++ +...... ......+....++..+.++|+|||.+++++. ......+...++
T Consensus 97 ~~~D~V~~~~~~~~~g~~~~----------------~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~ 160 (188)
T TIGR00438 97 DKVDVVMSDAAPNISGYWDI----------------DHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR 160 (188)
T ss_pred CCccEEEcCCCCCCCCCccc----------------cHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence 57999999852 2111000 0000112346889999999999999998653 345556666665
Q ss_pred HCCCeeEEEEecCCCCc
Q psy2395 546 KYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 546 ~~Gf~~i~~~~D~~g~~ 562 (570)
. +|..+.+.+|+.|++
T Consensus 161 ~-~~~~~~~~~~~~~~~ 176 (188)
T TIGR00438 161 K-LFEKVKVTKPQASRK 176 (188)
T ss_pred h-hhceEEEeCCCCCCc
Confidence 5 488899999998876
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.5e-11 Score=119.60 Aligned_cols=105 Identities=19% Similarity=0.283 Sum_probs=86.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||||||.|.+++.+|+.+ +.+|+|+++|+++.+.+++.+...+ ...+++++..|..+. .++||.|
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~g--l~~~v~v~l~d~rd~----~e~fDrI 141 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARG--LEDNVEVRLQDYRDF----EEPFDRI 141 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcC--CCcccEEEecccccc----cccccee
Confidence 4789999999999999999999987 6899999999999999999988754 445799999998543 2569999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
||=--|- .-|.+.+..+++.+.++|+|||.+++
T Consensus 142 vSvgmfE-----------------------hvg~~~~~~ff~~~~~~L~~~G~~ll 174 (283)
T COG2230 142 VSVGMFE-----------------------HVGKENYDDFFKKVYALLKPGGRMLL 174 (283)
T ss_pred eehhhHH-----------------------HhCcccHHHHHHHHHhhcCCCceEEE
Confidence 9922111 11335678999999999999999876
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=118.05 Aligned_cols=130 Identities=19% Similarity=0.260 Sum_probs=100.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc-ccc-cCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN-NLQ-NYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~-~l~-~~~~~fD 472 (570)
..++.+|||.|+|||.++.+|++...+..+|+.+|+.++.++.|++|++.++ ...++++.+.|+.+ ... .....||
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~g--l~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHG--LDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTT--CCTTEEEEES-GGCG--STT-TTSEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcC--CCCCceeEecceecccccccccCccc
Confidence 3689999999999999999999877667899999999999999999999864 44579999999964 231 1236799
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc-ccCeEEEEEEcC-CCHHHHHHHHHHCCCe
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL-VKNGLLLIEHGY-NQSNLVRKLLFKYGFS 550 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L-kpgG~l~~~~~~-~~~~~l~~ll~~~Gf~ 550 (570)
.|+.|.| +|+ ..+..+.+.| ++||++++-.|. +|...+.+.|++.||.
T Consensus 116 avfLDlp----------------~Pw--------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 116 AVFLDLP----------------DPW--------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFT 165 (247)
T ss_dssp EEEEESS----------------SGG--------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEE
T ss_pred EEEEeCC----------------CHH--------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCe
Confidence 9999876 232 3455677789 899999887765 7888889999999999
Q ss_pred eEEEEe
Q psy2395 551 DIKSWR 556 (570)
Q Consensus 551 ~i~~~~ 556 (570)
.++++.
T Consensus 166 ~i~~~E 171 (247)
T PF08704_consen 166 DIETVE 171 (247)
T ss_dssp EEEEEE
T ss_pred eeEEEE
Confidence 887654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.4e-11 Score=117.95 Aligned_cols=107 Identities=18% Similarity=0.277 Sum_probs=76.1
Q ss_pred ecCcccccCeeeeecCCccccchhHHHHHHHHHhh------cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCH
Q psy2395 359 IIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKK------TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISK 432 (570)
Q Consensus 359 i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~------~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~ 432 (570)
+++...||+-.| ...+++|..++.++...+.. ..+++.+|||+|||+|.++..++...+ +.+++|+|+|+
T Consensus 2 ~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~ 77 (204)
T TIGR03587 2 KTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINE 77 (204)
T ss_pred cchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCH
Confidence 456667787766 22366665444332222211 124567999999999999999988754 57999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 433 FALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 433 ~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
.|++.|+++.. ++.+.++|+.+ +..+++||+|+++-.
T Consensus 78 ~~l~~A~~~~~--------~~~~~~~d~~~--~~~~~sfD~V~~~~v 114 (204)
T TIGR03587 78 YAVEKAKAYLP--------NINIIQGSLFD--PFKDNFFDLVLTKGV 114 (204)
T ss_pred HHHHHHHhhCC--------CCcEEEeeccC--CCCCCCEEEEEECCh
Confidence 99999987643 26688899876 333579999999754
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-10 Score=120.04 Aligned_cols=107 Identities=21% Similarity=0.235 Sum_probs=76.3
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHhhcC----CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVKKTF----EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~----~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
|+....++...+.+++..+.+++.++..+. .++.+|||+|||+|.+++.+++. +.+|+|+|+|+.|++.|+++
T Consensus 109 y~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~ 185 (315)
T PLN02585 109 YGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERR 185 (315)
T ss_pred cCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHH
Confidence 344444455566666666655555554432 24679999999999999999975 36899999999999999999
Q ss_pred HHhhccc--CCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 442 AKKKLTK--YNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 442 ~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
+...+.. ...++.|..+|+.+ + +++||+|+|.-.
T Consensus 186 ~~~~~~~~~~~~~~~f~~~Dl~~-l---~~~fD~Vv~~~v 221 (315)
T PLN02585 186 AKEALAALPPEVLPKFEANDLES-L---SGKYDTVTCLDV 221 (315)
T ss_pred HHhcccccccccceEEEEcchhh-c---CCCcCEEEEcCE
Confidence 8753110 12357899999743 2 368999998643
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.9e-11 Score=120.01 Aligned_cols=154 Identities=23% Similarity=0.323 Sum_probs=101.9
Q ss_pred Ceeeeec------CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 367 GLVLNIT------SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 367 ~~~~~v~------~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
|..|.++ .|.|.-..+++.++... ..+.+|||++|-||.+++.++..+ ..+|++||.|..+++.|++
T Consensus 92 gl~f~v~l~~gqktGlFlDqR~nR~~v~~~-----~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~ 164 (286)
T PF10672_consen 92 GLKFRVDLTDGQKTGLFLDQRENRKWVRKY-----AKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKE 164 (286)
T ss_dssp TEEEEEESSSSSSTSS-GGGHHHHHHHHHH-----CTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHH
T ss_pred CEEEEEEcCCCCcceEcHHHHhhHHHHHHH-----cCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHH
Confidence 4555544 55565555566555443 246799999999999999988654 4589999999999999999
Q ss_pred HHHhhcccCCCCEEEEEccccccccc--CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 441 NAKKKLTKYNIPIKFIKSNWYNNLQN--YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 441 n~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
|+..|+.. ..+++|+++|+++.+.. ..++||+||+|||-+..... .+ ...|..++..+
T Consensus 165 N~~lNg~~-~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~-------------~~------~~~y~~L~~~a 224 (286)
T PF10672_consen 165 NAALNGLD-LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKF-------------DL------ERDYKKLLRRA 224 (286)
T ss_dssp HHHHTT-C-CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTC-------------EH------HHHHHHHHHHH
T ss_pred HHHHcCCC-ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHH-------------HH------HHHHHHHHHHH
Confidence 99987532 24699999999886542 23689999999995432210 00 13578899999
Q ss_pred hhccccCeEEEEEEcCC--CHHHHHHHHHHC
Q psy2395 519 SKYLVKNGLLLIEHGYN--QSNLVRKLLFKY 547 (570)
Q Consensus 519 ~~~LkpgG~l~~~~~~~--~~~~l~~ll~~~ 547 (570)
.++|+|||.+++..... ..+.+.+.+.+.
T Consensus 225 ~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~ 255 (286)
T PF10672_consen 225 MKLLKPGGLLLTCSCSHHISPDFLLEAVAEA 255 (286)
T ss_dssp HHTEEEEEEEEEEE--TTS-HHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 99999999987755332 234455555543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.26 E-value=5e-11 Score=116.45 Aligned_cols=143 Identities=10% Similarity=-0.013 Sum_probs=91.4
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc---------ccCCCCEE
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL---------TKYNIPIK 454 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~---------~~~~~~v~ 454 (570)
..+++++.....+++.+|||+|||.|..++.||.+ +.+|+|+|+|+.+++.+........ .....+++
T Consensus 21 ~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 21 PLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred HHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 34444443322235679999999999999999965 4799999999999998643221100 00134699
Q ss_pred EEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-c
Q psy2395 455 FIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-G 533 (570)
Q Consensus 455 ~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~ 533 (570)
++++|+++......++||.|+-.--++..+ .+....+++.+.+.|+|||++++++ .
T Consensus 98 ~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~-----------------------~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 98 IFCGDFFALTAADLGPVDAVYDRAALIALP-----------------------EEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred EEEccCCCCCcccCCCcCEEEechhhccCC-----------------------HHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 999999875432235799988743332110 1234678999999999999765532 1
Q ss_pred C-----------CCHHHHHHHHHHCCCeeEE
Q psy2395 534 Y-----------NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 534 ~-----------~~~~~l~~ll~~~Gf~~i~ 553 (570)
. -...++.+++.. +|.+..
T Consensus 155 ~~~~~~~gpp~~~~~~eL~~~f~~-~~~i~~ 184 (213)
T TIGR03840 155 YDQSEMAGPPFSVSPAEVEALYGG-HYEIEL 184 (213)
T ss_pred cCCCCCCCcCCCCCHHHHHHHhcC-CceEEE
Confidence 1 124567776653 455433
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-10 Score=124.97 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=118.5
Q ss_pred CeeeeecCCccccc--hhHHHHHHHHHhhcCC-CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR--PETELLVDLIVKKTFE-KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~-~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
+..|.++++.|++. ..++.|+++++++... ++.++||+.||.|.+++.+|+. ..+|+|+|+++++++.|++|++
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~ 336 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAA 336 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHH
Confidence 57788888777766 5788999999888653 5679999999999999999955 4699999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCC--CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYK--KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~--~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
.|+ ..+++|..+|+.+...... ..||.||.|||=- |++ ..+++.+. .
T Consensus 337 ~n~---i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~-------------------------G~~--~~~lk~l~-~ 385 (432)
T COG2265 337 ANG---IDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRA-------------------------GAD--REVLKQLA-K 385 (432)
T ss_pred HcC---CCcEEEEeCCHHHHhhhccccCCCCEEEECCCCC-------------------------CCC--HHHHHHHH-h
Confidence 863 2349999999977655432 4799999999832 222 34444444 4
Q ss_pred cccCeEEEEEEcCCCHHHHHHHHHHCCCee
Q psy2395 522 LVKNGLLLIEHGYNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 522 LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~ 551 (570)
++|..++++.+.+.....-...|.+.||.+
T Consensus 386 ~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i 415 (432)
T COG2265 386 LKPKRIVYVSCNPATLARDLAILASTGYEI 415 (432)
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHhCCeEE
Confidence 788899999888777776777788888864
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-10 Score=114.67 Aligned_cols=130 Identities=19% Similarity=0.185 Sum_probs=92.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD 472 (570)
..++.+|||+|||+|.++..++....+...|+|+|+++.+++.....+.. ..++.++.+|+.... ..+.++||
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~vD 204 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPMVD 204 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCCCC
Confidence 35778999999999999999998864456899999999877555444432 235889999986532 11235799
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------CHHHH----HH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------QSNLV----RK 542 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~l----~~ 542 (570)
+|+++-.. | +..+.++.++.++|||||.|++.+... ..+.+ .+
T Consensus 205 vV~~Dva~----------------p-----------dq~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~ 257 (293)
T PTZ00146 205 VIFADVAQ----------------P-----------DQARIVALNAQYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQ 257 (293)
T ss_pred EEEEeCCC----------------c-----------chHHHHHHHHHHhccCCCEEEEEEeccccccCCCHHHHHHHHHH
Confidence 99997531 0 123556678899999999999854321 12222 47
Q ss_pred HHHHCCCeeEEEEe
Q psy2395 543 LLFKYGFSDIKSWR 556 (570)
Q Consensus 543 ll~~~Gf~~i~~~~ 556 (570)
.|++.||..++...
T Consensus 258 ~L~~~GF~~~e~v~ 271 (293)
T PTZ00146 258 KLKKEGLKPKEQLT 271 (293)
T ss_pred HHHHcCCceEEEEe
Confidence 78999999877653
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=131.08 Aligned_cols=120 Identities=20% Similarity=0.187 Sum_probs=89.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv 475 (570)
++.+|||+|||+|.++..++...+ +.+|+|+|+|+.|++.|+++... .+.++.++++|+.+... ..+++||+|+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~----~g~~ie~I~gDa~dLp~~fedeSFDvVV 492 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQN----EGRSWNVIKGDAINLSSSFEKESVDTIV 492 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhh----cCCCeEEEEcchHhCccccCCCCEEEEE
Confidence 467999999999999999988775 68999999999999999998764 34568899999865221 2347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+|++++.-.. |-| ..+...+......+++++.+.|||||.+++..+
T Consensus 493 sn~vLH~L~s---------yIp---~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 493 YSSILHELFS---------YIE---YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EchHHHhhhh---------hcc---cccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 9987652110 000 001111234668999999999999999988643
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=115.56 Aligned_cols=116 Identities=23% Similarity=0.261 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
...+++.+.......+.+|||+|||+|.++..++..++ ..+++|+|+++.++..++.+.. .++.++.+|+.+
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~ 91 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEK 91 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhh
Confidence 34444444332223457999999999999999998876 5789999999999999987653 257899999865
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
. +..+++||+|+++-.+.... ....++..+.+.|+|||.+++..
T Consensus 92 ~-~~~~~~fD~vi~~~~l~~~~-------------------------~~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 92 L-PLEDSSFDLIVSNLALQWCD-------------------------DLSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred C-CCCCCceeEEEEhhhhhhcc-------------------------CHHHHHHHHHHHcCCCcEEEEEe
Confidence 3 33357899999975433211 23678899999999999998854
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-11 Score=111.98 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=64.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++... .+|+|+|+|+.+++.+++|+.. ..+++++++|+.+... .+..||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~-----~~~v~ii~~D~~~~~~-~~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA-----ADNLTVIHGDALKFDL-PKLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc-----CCCEEEEECchhcCCc-cccCCCEEE
Confidence 456799999999999999999763 6899999999999999999853 3468999999976432 234699999
Q ss_pred ECCCCCC
Q psy2395 476 ANPPYIP 482 (570)
Q Consensus 476 ~NPPy~~ 482 (570)
+||||..
T Consensus 83 ~n~Py~~ 89 (169)
T smart00650 83 GNLPYNI 89 (169)
T ss_pred ECCCccc
Confidence 9999973
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.3e-11 Score=130.01 Aligned_cols=171 Identities=21% Similarity=0.288 Sum_probs=108.7
Q ss_pred CCccccchhHHHHHHHHHhhcC----CCCCEEEEECCcccHHHHHHHHhcCC-------CcEEEEEeCCHHHHHHHHHHH
Q psy2395 374 SDVLIPRPETELLVDLIVKKTF----EKKIKLLEMGTGSGAIAIAIAIYSKN-------KIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~----~~~~~VLDlGcGtG~i~l~la~~~~~-------~~~V~gvDis~~al~~A~~n~ 442 (570)
..+|+|...++.|++.+..... ..+.+|||+|||+|.+.+.++...+. ...++|+|+++.++..|+.|+
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 3568899999999998865322 13569999999999999999876521 257899999999999999998
Q ss_pred HhhcccCCCCEEEEEccccccc----ccCCCceeEEEECCCCCCCCCcc-cCC----CCc-cc--------------ccc
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNL----QNYKKLFNIIVANPPYIPKGDIH-LNK----GDL-RF--------------EPI 498 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l----~~~~~~fD~Iv~NPPy~~~~~~~-~~~----~~~-~~--------------ep~ 498 (570)
...+ ...+.+.++|..... ....+.||+||+||||....... ... ... .| -+.
T Consensus 84 ~~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (524)
T TIGR02987 84 GEFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPY 160 (524)
T ss_pred hhcC---CCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcch
Confidence 7632 223556666654321 11125899999999998643211 000 000 00 000
Q ss_pred cc-ccccCCChHHHHHH-HHHHhhccccCeEEEEEEcC-----CCHHHHHHHHHHC
Q psy2395 499 NA-LTDYSNGLSSIKEI-VKNASKYLVKNGLLLIEHGY-----NQSNLVRKLLFKY 547 (570)
Q Consensus 499 ~a-l~~~~~gl~~~~~~-l~~~~~~LkpgG~l~~~~~~-----~~~~~l~~ll~~~ 547 (570)
.. .....+....|..+ ++.+.++|++||++.+++|. .....+++.+.+.
T Consensus 161 ~~~~~~~~g~~~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 161 SDPIRKYAGVGTEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hhhhcccCCcccHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 00 00001111245554 46789999999999998876 2345677766553
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=107.27 Aligned_cols=140 Identities=18% Similarity=0.235 Sum_probs=95.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.-.++||+|||.|.++..||.++ .+++++|+|+.+++.|++.... ..+|+|.++|+.+..+ .++||+||.
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~-----~~~V~~~~~dvp~~~P--~~~FDLIV~ 112 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG-----LPHVEWIQADVPEFWP--EGRFDLIVL 112 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT-----SS-EEEEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC-----CCCeEEEECcCCCCCC--CCCeeEEEE
Confidence 34689999999999999999775 5899999999999999999873 3469999999977654 489999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC----------CHHHHHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN----------QSNLVRKLLFK 546 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~l~~ll~~ 546 (570)
.- +..| -+..+.++.++..+...|+|||.+++.+..+ -.+.+.++|.+
T Consensus 113 SE-------------VlYY---------L~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 113 SE-------------VLYY---------LDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQE 170 (201)
T ss_dssp ES--------------GGG---------SSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHH
T ss_pred eh-------------HhHc---------CCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHH
Confidence 31 1111 1223456788999999999999999865321 24667777776
Q ss_pred CCCeeEEEEe--cCCCCceEEEEEe
Q psy2395 547 YGFSDIKSWR--DLSGIERVTQGKI 569 (570)
Q Consensus 547 ~Gf~~i~~~~--D~~g~~R~~~~~~ 569 (570)
. +..|+... .-.-.+-++++++
T Consensus 171 ~-~~~~~~~~~~~~~~~~~~~~~~~ 194 (201)
T PF05401_consen 171 H-LTEVERVECRGGSPNEDCLLARF 194 (201)
T ss_dssp H-SEEEEEEEEE-SSTTSEEEEEEE
T ss_pred H-hhheeEEEEcCCCCCCceEeeee
Confidence 4 66655432 3344456666664
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-11 Score=115.28 Aligned_cols=139 Identities=23% Similarity=0.328 Sum_probs=108.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-CceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~fD~I 474 (570)
+.+.+|||.|+|-|+.++..++++ ..+|+.+|.||..+++|+-|-...++ ....+.++.||+.+....++ .+||+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG--A~~VitvEkdp~VLeLa~lNPwSr~l-~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG--AIHVITVEKDPNVLELAKLNPWSREL-FEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC--CcEEEEEeeCCCeEEeeccCCCCccc-cccccEEecccHHHHHhcCCccccceE
Confidence 468899999999999999999876 35999999999999999999764322 22368999999988776554 679999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC--------CHHHHHHHHHH
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN--------QSNLVRKLLFK 546 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~l~~ll~~ 546 (570)
+-+||-++.. +. -.-..|..++++.|+|||.++..+|.. -...+.+.|++
T Consensus 210 iHDPPRfS~A------------------ge----LYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 210 IHDPPRFSLA------------------GE----LYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred eeCCCccchh------------------hh----HhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 9999965322 11 012467778888999999999877642 35678899999
Q ss_pred CCCeeEEEEecCC
Q psy2395 547 YGFSDIKSWRDLS 559 (570)
Q Consensus 547 ~Gf~~i~~~~D~~ 559 (570)
.||..++..+...
T Consensus 268 vGF~~v~~~~~~~ 280 (287)
T COG2521 268 VGFEVVKKVREAL 280 (287)
T ss_pred cCceeeeeehhcc
Confidence 9999887765443
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-10 Score=112.30 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=96.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++.. .+.++.+..+|+.+......++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALE----SGLKIDYRQTTAEELAAEHPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHH----cCCceEEEecCHHHhhhhcCCCccEEE
Confidence 357799999999999999888653 6899999999999999999875 234678888888554322347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++..+.... ....+++.+.+.|+|||.+++....
T Consensus 120 ~~~~l~~~~-------------------------~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (233)
T PRK05134 120 CMEMLEHVP-------------------------DPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLP 174 (233)
T ss_pred EhhHhhccC-------------------------CHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcC
Confidence 964332111 2257788999999999999876421
Q ss_pred ---------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 ---------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 ---------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++.+++.++||..+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 175 KGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred cccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 123568889999999988664
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=117.23 Aligned_cols=120 Identities=12% Similarity=0.189 Sum_probs=96.6
Q ss_pred chhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
.|+...+...+... .++.+|||+|||+|+.++.+|...+++.+|+++|.++++++.|++|+++.+ ...+++++.||
T Consensus 103 ~~~~g~lL~~L~~~--~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aG--l~~~I~li~Gd 178 (278)
T PLN02476 103 SPDQAQLLAMLVQI--LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAG--VSHKVNVKHGL 178 (278)
T ss_pred CHHHHHHHHHHHHh--cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcC
Confidence 45666666666554 356799999999999999999876656789999999999999999999864 34579999999
Q ss_pred cccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 460 WYNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 460 ~~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+.+.++.. .++||+||.+++- ..|..+++.+.++|+|||.+++.
T Consensus 179 A~e~L~~l~~~~~~~~FD~VFIDa~K----------------------------~~Y~~y~e~~l~lL~~GGvIV~D 227 (278)
T PLN02476 179 AAESLKSMIQNGEGSSYDFAFVDADK----------------------------RMYQDYFELLLQLVRVGGVIVMD 227 (278)
T ss_pred HHHHHHHHHhcccCCCCCEEEECCCH----------------------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 98866532 2589999997641 25678888889999999999873
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=117.92 Aligned_cols=114 Identities=18% Similarity=0.283 Sum_probs=80.7
Q ss_pred HHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc
Q psy2395 387 VDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ 465 (570)
Q Consensus 387 ~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~ 465 (570)
++.+.+.+ .+++.+|||||||.|.+++.+|+.+ +++|+|+.+|++..+.|++.+...+ ...++++...|..+ ++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~g--l~~~v~v~~~D~~~-~~ 125 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAG--LEDRVEVRLQDYRD-LP 125 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCST--SSSTEEEEES-GGG---
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEeeccc-cC
Confidence 34444432 3688999999999999999999987 5899999999999999999998753 34579999999854 32
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+||.|++--.+ ..-|...+..+++.+.++|+|||.+++.
T Consensus 126 ---~~fD~IvSi~~~-----------------------Ehvg~~~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 126 ---GKFDRIVSIEMF-----------------------EHVGRKNYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp ----S-SEEEEESEG-----------------------GGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred ---CCCCEEEEEech-----------------------hhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 489999992110 0113346789999999999999999863
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=119.15 Aligned_cols=103 Identities=18% Similarity=0.279 Sum_probs=78.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++..+....|+|+|+++.+++.|++|+..++ -.++.++++|+.+.... ..+||+|+
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---~~nV~~i~gD~~~~~~~-~~~fD~Ii 154 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---IENVIFVCGDGYYGVPE-FAPYDVIF 154 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeCChhhcccc-cCCccEEE
Confidence 467899999999999999999876433579999999999999999998742 23589999998665433 25799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++... ..+...+.+.|+|||.+++..+
T Consensus 155 ~~~g~-------------------------------~~ip~~~~~~LkpgG~Lvv~~~ 181 (322)
T PRK13943 155 VTVGV-------------------------------DEVPETWFTQLKEGGRVIVPIN 181 (322)
T ss_pred ECCch-------------------------------HHhHHHHHHhcCCCCEEEEEeC
Confidence 95210 1222345568999999888654
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=113.47 Aligned_cols=147 Identities=13% Similarity=0.182 Sum_probs=100.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+++.+|||+|||+|.++..+++..+ ..+|+++|+||.+++.|++++... ....+++++.+|+.+.+....++||+|+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~ 141 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVIL 141 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEE
Confidence 4567999999999999999998875 689999999999999999998642 1235799999999776654446899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC--HHHHHHHHHHCCCee-E
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ--SNLVRKLLFKYGFSD-I 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~l~~ll~~~Gf~~-i 552 (570)
+|. |.... . | .. -....+++.+.+.|+|||++++...... ...+.+.+++. |.. +
T Consensus 142 ~D~-~~~~~-~----------~--------~~-l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~~~~ 199 (262)
T PRK04457 142 VDG-FDGEG-I----------I--------DA-LCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS-FEGRV 199 (262)
T ss_pred EeC-CCCCC-C----------c--------cc-cCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cCCcE
Confidence 984 22110 0 0 00 0136889999999999999988543222 23344445443 542 2
Q ss_pred EEEecCCCCceEEEE
Q psy2395 553 KSWRDLSGIERVTQG 567 (570)
Q Consensus 553 ~~~~D~~g~~R~~~~ 567 (570)
-..+-..+...++++
T Consensus 200 ~~~~~~~~~N~v~~a 214 (262)
T PRK04457 200 LELPAESHGNVAVFA 214 (262)
T ss_pred EEEecCCCccEEEEE
Confidence 233322333455555
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=120.50 Aligned_cols=152 Identities=19% Similarity=0.250 Sum_probs=96.7
Q ss_pred CeeeeecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 367 GLVLNITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 367 ~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
+..|.++|+.|++. ..++.|++++++++...+..|||++||+|.+++.+|..+ .+|+|||+++.|++.|++|+..
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~ 240 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKL 240 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHH
Confidence 56788889988877 678899999998876545589999999999999999654 6899999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccc---------------cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChH
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQ---------------NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLS 509 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~---------------~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~ 509 (570)
|+. .+++|+.+++.+... .....+|+|+.|||=- |++
T Consensus 241 N~i---~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~-------------------------G~~ 292 (352)
T PF05958_consen 241 NGI---DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRA-------------------------GLD 292 (352)
T ss_dssp TT-----SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT--------------------------SC
T ss_pred cCC---CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCC-------------------------Cch
Confidence 632 359999887643211 0113689999999832 222
Q ss_pred HHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 510 SIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 510 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
..+++.+.+ +.-++|+.+.+.....-...|.+ ||+..++.
T Consensus 293 --~~~~~~~~~---~~~ivYvSCnP~tlaRDl~~L~~-~y~~~~v~ 332 (352)
T PF05958_consen 293 --EKVIELIKK---LKRIVYVSCNPATLARDLKILKE-GYKLEKVQ 332 (352)
T ss_dssp --HHHHHHHHH---SSEEEEEES-HHHHHHHHHHHHC-CEEEEEEE
T ss_pred --HHHHHHHhc---CCeEEEEECCHHHHHHHHHHHhh-cCEEEEEE
Confidence 233433332 34456666655444433444544 88875543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.21 E-value=4e-10 Score=116.51 Aligned_cols=129 Identities=17% Similarity=0.194 Sum_probs=95.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|||+|||+|.+++.+++.+| +.+++++|. |.+++.|++|+...+ ...+++++.+|+++.. . ..+|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~g--l~~rv~~~~~d~~~~~-~--~~~D~v~ 220 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKES-Y--PEADAVL 220 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCC--ccceEEEEecCccCCC-C--CCCCEEE
Confidence 4567999999999999999999986 589999997 899999999998753 3447999999997632 2 2479887
Q ss_pred EC-CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-E--cC-C---------------
Q psy2395 476 AN-PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-H--GY-N--------------- 535 (570)
Q Consensus 476 ~N-PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~--~~-~--------------- 535 (570)
+. -.+. .+.+....+++++++.|+|||++++. + +. .
T Consensus 221 ~~~~lh~------------------------~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 276 (306)
T TIGR02716 221 FCRILYS------------------------ANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAG 276 (306)
T ss_pred eEhhhhc------------------------CChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHcc
Confidence 62 1111 01123467899999999999999763 2 11 1
Q ss_pred ---------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ---------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ---------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
..+++.++|.++||+.+++.
T Consensus 277 ~~~~~~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 277 MPFSVLGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred cccccccCCCHHHHHHHHHHcCCCeeEec
Confidence 12467888889999887654
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-10 Score=110.88 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=96.2
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.++..+.... .++.+|||+|||||.++..+++.. +.+|+|+|+|+.|++.|+... .++++|+.+ +
T Consensus 40 ~~~~~l~~~~-~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-----------~~~~~d~~~-l 104 (226)
T PRK05785 40 ELVKTILKYC-GRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-----------DKVVGSFEA-L 104 (226)
T ss_pred HHHHHHHHhc-CCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc-----------ceEEechhh-C
Confidence 4444444332 246799999999999999999775 369999999999999987531 256788854 5
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC--------
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-------- 536 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------- 536 (570)
+..+++||+|+++...... ......++++.++|||.+ .+++++...
T Consensus 105 p~~d~sfD~v~~~~~l~~~-------------------------~d~~~~l~e~~RvLkp~~-~ile~~~p~~~~~~~~~ 158 (226)
T PRK05785 105 PFRDKSFDVVMSSFALHAS-------------------------DNIEKVIAEFTRVSRKQV-GFIAMGKPDNVIKRKYL 158 (226)
T ss_pred CCCCCCEEEEEecChhhcc-------------------------CCHHHHHHHHHHHhcCce-EEEEeCCCCcHHHHHHH
Confidence 6556899999996533211 123678888888888842 233432211
Q ss_pred ----------------------------------HHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 537 ----------------------------------SNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 537 ----------------------------------~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
.+++.++++++| ..++...-..|.--+.+|+
T Consensus 159 ~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~~~~~~~G~~~~~~~~ 223 (226)
T PRK05785 159 SFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKVYEERGLGLVYFVVGS 223 (226)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceEEEEccccEEEEEEEe
Confidence 256777777763 5566666666666666654
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-10 Score=109.50 Aligned_cols=124 Identities=20% Similarity=0.229 Sum_probs=88.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.++||+|||.|..++.||+.+ ..|+|+|+|+.+++.+++.+.. .+.+++..+.|+.+... ++.||+|++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~----~~l~i~~~~~Dl~~~~~--~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEE----EGLDIRTRVADLNDFDF--PEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHH----TT-TEEEEE-BGCCBS---TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhh----cCceeEEEEecchhccc--cCCcCEEEE
Confidence 56799999999999999999775 7999999999999999888876 45679999999966433 368999998
Q ss_pred CC--CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------------CCHHHH
Q psy2395 477 NP--PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------NQSNLV 540 (570)
Q Consensus 477 NP--Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------~~~~~l 540 (570)
.- .|.+. +....+++.+...++|||+++++.-. ....++
T Consensus 101 t~v~~fL~~-------------------------~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~~~~EL 155 (192)
T PF03848_consen 101 TVVFMFLQR-------------------------ELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLLKPGEL 155 (192)
T ss_dssp ESSGGGS-G-------------------------GGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B-TTHH
T ss_pred EEEeccCCH-------------------------HHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCcccCHHHH
Confidence 31 12211 24478899999999999998874311 012455
Q ss_pred HHHHHHCCCeeEEEEe
Q psy2395 541 RKLLFKYGFSDIKSWR 556 (570)
Q Consensus 541 ~~ll~~~Gf~~i~~~~ 556 (570)
..++. +|.+++.-.
T Consensus 156 ~~~y~--dW~il~y~E 169 (192)
T PF03848_consen 156 REYYA--DWEILKYNE 169 (192)
T ss_dssp HHHTT--TSEEEEEEE
T ss_pred HHHhC--CCeEEEEEc
Confidence 55554 688765433
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=118.00 Aligned_cols=128 Identities=16% Similarity=0.090 Sum_probs=94.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv 475 (570)
.+..+||||||+|.+++.+|+..| ...++|+|+++.+++.|.+++..++ -.++.++++|+...+. ..++++|.|+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~g---L~NV~~i~~DA~~ll~~~~~~s~D~I~ 197 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLN---LKNLLIINYDARLLLELLPSNSVEKIF 197 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcC---CCcEEEEECCHHHhhhhCCCCceeEEE
Confidence 456899999999999999999886 6899999999999999999998743 2359999999854321 2247999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKY 547 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~ 547 (570)
+|.|.-..... | ..+ ....++..+.++|+|||.+.+.+.. .......+.+.+.
T Consensus 198 lnFPdPW~Kkr--------H---RRl--------v~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 198 VHFPVPWDKKP--------H---RRV--------ISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EeCCCCccccc--------h---hhc--------cHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 99763211110 1 001 2378999999999999999986654 3344445555555
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-12 Score=109.80 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=61.2
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeEEEECCCC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPY 480 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy 480 (570)
||+|||+|.++..++...+ ..+++|+|+|+.|++.|++++.... .........+..+..... .++||+|+++-.+
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhH
Confidence 7999999999999998875 6899999999999999988887632 223334443333322211 2589999996433
Q ss_pred CCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEE
Q psy2395 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 481 ~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l 528 (570)
+.. .....+++.+.++|+|||+|
T Consensus 77 ~~l-------------------------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHL-------------------------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S---------------------------S-HHHHHHHHTTT-TSS-EE
T ss_pred hhh-------------------------hhHHHHHHHHHHHcCCCCCC
Confidence 211 24578999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-10 Score=106.56 Aligned_cols=116 Identities=23% Similarity=0.347 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+++|+|+++.+++. . . +.....+... ...++++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~---~~~~g~D~~~~~~~~------~----~---~~~~~~~~~~-~~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRG---FEVTGVDISPQMIEK------R----N---VVFDNFDAQD-PPFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTT---SEEEEEESSHHHHHH------T----T---SEEEEEECHT-HHCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEECCHHHHhh------h----h---hhhhhhhhhh-hhccccchhhHh
Confidence 567899999999999999997654 599999999999988 1 1 2222222212 222347999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ------------------- 536 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------- 536 (570)
++--+.. +.....+++.+.++|+|||++++..+...
T Consensus 84 ~~~~l~~-------------------------~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (161)
T PF13489_consen 84 CNDVLEH-------------------------LPDPEEFLKELSRLLKPGGYLVISDPNRDDPSPRSFLKWRYDRPYGGH 138 (161)
T ss_dssp EESSGGG-------------------------SSHHHHHHHHHHHCEEEEEEEEEEEEBTTSHHHHHHHHCCGTCHHTTT
T ss_pred hHHHHhh-------------------------cccHHHHHHHHHHhcCCCCEEEEEEcCCcchhhhHHHhcCCcCccCce
Confidence 9632211 11357899999999999999998765421
Q ss_pred -----HHHHHHHHHHCCCeeEE
Q psy2395 537 -----SNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 537 -----~~~l~~ll~~~Gf~~i~ 553 (570)
...+..+++++||++++
T Consensus 139 ~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 139 VHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp TEEBBHHHHHHHHHHTTEEEEE
T ss_pred eccCCHHHHHHHHHHCCCEEEE
Confidence 36788888889988764
|
... |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-10 Score=111.85 Aligned_cols=119 Identities=23% Similarity=0.309 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
++...++..+.... ++.+||+||||+|+-++.+|+..+++++|+.+|++++..+.|+++++..+ ...+|+++.+|+
T Consensus 31 ~~~g~lL~~l~~~~--~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag--~~~~I~~~~gda 106 (205)
T PF01596_consen 31 PETGQLLQMLVRLT--RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAG--LDDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHH--T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTT--GGGGEEEEES-H
T ss_pred HHHHHHHHHHHHhc--CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcC--CCCcEEEEEecc
Confidence 44445555555433 56799999999999999999988778999999999999999999999864 345799999999
Q ss_pred ccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.++.. .++||+|+.+-. -..|..+++.+.++|+|||.+++.
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~----------------------------K~~y~~y~~~~~~ll~~ggvii~D 154 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDAD----------------------------KRNYLEYFEKALPLLRPGGVIIAD 154 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEEST----------------------------GGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhHHHHHhccCCCceeEEEEccc----------------------------ccchhhHHHHHhhhccCCeEEEEc
Confidence 8755421 257999999531 135677888888999999999874
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-10 Score=110.38 Aligned_cols=133 Identities=17% Similarity=0.205 Sum_probs=94.1
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.++..|++++..++ ...++.|.++|+.+. + ++||+|++
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~-~---~~fD~ii~ 125 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRD--VAGNVEFEVNDLLSL-C---GEFDIVVC 125 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChhhC-C---CCcCEEEE
Confidence 5789999999999999999865 3689999999999999999987531 123699999998553 2 68999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------------- 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 534 (570)
.-.+... .......++..+.+.+++++.+.+....
T Consensus 126 ~~~l~~~-----------------------~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (219)
T TIGR02021 126 MDVLIHY-----------------------PASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRATSA 182 (219)
T ss_pred hhHHHhC-----------------------CHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCcccccce
Confidence 4221110 0112356677777777766655542110
Q ss_pred --CCHHHHHHHHHHCCCeeEEEEecCCCC
Q psy2395 535 --NQSNLVRKLLFKYGFSDIKSWRDLSGI 561 (570)
Q Consensus 535 --~~~~~l~~ll~~~Gf~~i~~~~D~~g~ 561 (570)
...+.+.++++++||.++.......|.
T Consensus 183 ~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 183 YLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred EEecHHHHHHHHHHcCceeeeeecccccc
Confidence 134678889999999998776555443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-10 Score=121.02 Aligned_cols=101 Identities=19% Similarity=0.332 Sum_probs=81.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. +++|+|+|+|+.+++.|++++.. ..+++..+|+.+. .++||+|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc----CCCCCEEE
Confidence 567899999999999999999775 47999999999999999998752 2488888887542 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
++..+... |...+..+++.+.++|+|||.+++.
T Consensus 234 s~~~~ehv-----------------------g~~~~~~~l~~i~r~LkpGG~lvl~ 266 (383)
T PRK11705 234 SVGMFEHV-----------------------GPKNYRTYFEVVRRCLKPDGLFLLH 266 (383)
T ss_pred EeCchhhC-----------------------ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 97644311 1234578899999999999999874
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=117.60 Aligned_cols=120 Identities=20% Similarity=0.271 Sum_probs=83.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC--CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN--KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~--~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
+.+...+.........+|||+|||+|.++..++...+. ...|+|+|+|+.|++.|+++.. ++.|.++|+.
T Consensus 72 ~~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~--------~~~~~~~d~~ 143 (272)
T PRK11088 72 DAVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP--------QVTFCVASSH 143 (272)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC--------CCeEEEeecc
Confidence 34444444433445578999999999999999876542 2479999999999999976532 3789999986
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHH
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLV 540 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l 540 (570)
+ ++..+++||+|+++- . | ..++++.+.|+|||++++..+. ....++
T Consensus 144 ~-lp~~~~sfD~I~~~~--~---------------~---------------~~~~e~~rvLkpgG~li~~~p~~~~l~el 190 (272)
T PRK11088 144 R-LPFADQSLDAIIRIY--A---------------P---------------CKAEELARVVKPGGIVITVTPGPRHLFEL 190 (272)
T ss_pred c-CCCcCCceeEEEEec--C---------------C---------------CCHHHHHhhccCCCEEEEEeCCCcchHHH
Confidence 5 444457999999841 1 0 1235677899999999887654 334444
Q ss_pred HHHH
Q psy2395 541 RKLL 544 (570)
Q Consensus 541 ~~ll 544 (570)
+..+
T Consensus 191 ~~~~ 194 (272)
T PRK11088 191 KGLI 194 (272)
T ss_pred HHHh
Confidence 4443
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7e-10 Score=109.13 Aligned_cols=127 Identities=16% Similarity=0.234 Sum_probs=95.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC-CEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+.+|||+|||+|.++..+++.. .+++|+|+++.+++.+++++..+ +. ++.+..+|+.+......++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKD----PLLKIEYRCTSVEDLAEKGAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHc----CCCceEEEeCCHHHhhcCCCCCccEEE
Confidence 46799999999999999988654 47999999999999999998753 33 588999998654332236899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC--------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-------------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------- 535 (570)
++..+... .....++..+.+.|+|||.+++.....
T Consensus 118 ~~~~l~~~-------------------------~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR01983 118 CMEVLEHV-------------------------PDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVP 172 (224)
T ss_pred ehhHHHhC-------------------------CCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCC
Confidence 96432211 123678889999999999988754211
Q ss_pred ----------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ----------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ----------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
....+.+++.+.||+.+++.
T Consensus 173 ~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 173 KGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 23467889999999987654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.2e-11 Score=104.11 Aligned_cols=97 Identities=23% Similarity=0.359 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 381 PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
..+..|+..+-.-.. -.+++++|+|||+|.+++..+... ...|+|+||+|++++.+.+|+.. ...++.++++|
T Consensus 31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~--~e~vlGfDIdpeALEIf~rNaeE----fEvqidlLqcd 104 (185)
T KOG3420|consen 31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK--NESVLGFDIDPEALEIFTRNAEE----FEVQIDLLQCD 104 (185)
T ss_pred HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCC--CceEEeeecCHHHHHHHhhchHH----hhhhhheeeee
Confidence 344555555544322 367899999999999997776543 56899999999999999999987 57778999999
Q ss_pred cccccccCCCceeEEEECCCCCCCC
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKG 484 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~ 484 (570)
+.+.... .+.||.++.||||....
T Consensus 105 ildle~~-~g~fDtaviNppFGTk~ 128 (185)
T KOG3420|consen 105 ILDLELK-GGIFDTAVINPPFGTKK 128 (185)
T ss_pred ccchhcc-CCeEeeEEecCCCCccc
Confidence 9775443 47899999999998653
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=5e-10 Score=108.55 Aligned_cols=118 Identities=19% Similarity=0.291 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE-cc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK-SN 459 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~-~D 459 (570)
|++-.++..++... ++.+||++|++.|+-++.+|...+.+.+++.+|+++++.+.|++|+++.+ ...++.++. +|
T Consensus 45 ~e~g~~L~~L~~~~--~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag--~~~~i~~~~~gd 120 (219)
T COG4122 45 PETGALLRLLARLS--GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAG--VDDRIELLLGGD 120 (219)
T ss_pred hhHHHHHHHHHHhc--CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcC--CcceEEEEecCc
Confidence 67777777776643 67899999999999999999988767899999999999999999999864 344588888 69
Q ss_pred ccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 460 WYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 460 ~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+.+.+.. ..++||+||.+- ....|..+++.+.++|+|||.+++
T Consensus 121 al~~l~~~~~~~fDliFIDa----------------------------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDA----------------------------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHHhccCCCccEEEEeC----------------------------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 8877663 458999999952 113567889999999999999987
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.1e-10 Score=113.98 Aligned_cols=133 Identities=22% Similarity=0.255 Sum_probs=96.6
Q ss_pred cchhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCC-------------------------------Cc---
Q psy2395 379 PRPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKN-------------------------------KI--- 423 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~-------------------------------~~--- 423 (570)
|.|..+.|...++.... .++..++|.-||||.+++..|...++ .+
T Consensus 172 ~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 172 PAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred CCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 34556777666665422 34568999999999999999977631 01
Q ss_pred ----EEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccc
Q psy2395 424 ----EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPIN 499 (570)
Q Consensus 424 ----~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~ 499 (570)
.++|+|+|+.+++.|+.|+...| ....|+|.++|+...-+.. +.+|+|||||||...-
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AG--v~d~I~f~~~d~~~l~~~~-~~~gvvI~NPPYGeRl--------------- 313 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAG--VGDLIEFKQADATDLKEPL-EEYGVVISNPPYGERL--------------- 313 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcC--CCceEEEEEcchhhCCCCC-CcCCEEEeCCCcchhc---------------
Confidence 37899999999999999999754 4456999999996533322 6899999999998431
Q ss_pred cccccCCCh-HHHHHHHHHHhhccccCeEEEEEE
Q psy2395 500 ALTDYSNGL-SSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 500 al~~~~~gl-~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+..... .+|..|.+.+.+.++.-+..++..
T Consensus 314 ---g~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 314 ---GSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred ---CChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 111122 378888888888887777776654
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-09 Score=112.06 Aligned_cols=135 Identities=16% Similarity=0.080 Sum_probs=89.9
Q ss_pred CCccccchhHHHHHHHHHhh--cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 374 SDVLIPRPETELLVDLIVKK--TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~--~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
|.++-.|.+...+...+... ..+++.+|||+|||||..+..++..++...+|+|+|+|++|++.|++++.... ...
T Consensus 38 peYy~tr~E~~il~~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~--p~~ 115 (301)
T TIGR03438 38 PEYYPTRTEAAILERHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY--PQL 115 (301)
T ss_pred CccccHHHHHHHHHHHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC--CCc
Confidence 44443445555555444322 12456799999999999999999876434789999999999999999886521 245
Q ss_pred CEEEEEcccccccccCCC----ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeE
Q psy2395 452 PIKFIKSNWYNNLQNYKK----LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGL 527 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~----~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~ 527 (570)
++.++++|+.+....... ...++++..++... ..+....+++.+.+.|+|||.
T Consensus 116 ~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~-----------------------~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 116 EVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNF-----------------------TPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred eEEEEEEcccchhhhhcccccCCeEEEEecccccCC-----------------------CHHHHHHHHHHHHHhcCCCCE
Confidence 688899999765432211 22233332221110 113456899999999999999
Q ss_pred EEEEEc
Q psy2395 528 LLIEHG 533 (570)
Q Consensus 528 l~~~~~ 533 (570)
+++.+.
T Consensus 173 ~lig~d 178 (301)
T TIGR03438 173 LLIGVD 178 (301)
T ss_pred EEEecc
Confidence 998653
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=108.04 Aligned_cols=126 Identities=22% Similarity=0.278 Sum_probs=84.0
Q ss_pred Ceeeeec--CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 367 GLVLNIT--SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 367 ~~~~~v~--~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
|..|.++ .-+|.|+-.+|.. .+.. ...++..|+|++||.|.+++.+|+..+ ...|+|+|++|.+++..++|++.
T Consensus 72 G~~f~~D~~kvyfs~rl~~Er~--Ri~~-~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~l 147 (200)
T PF02475_consen 72 GIRFKVDLSKVYFSPRLSTERR--RIAN-LVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRL 147 (200)
T ss_dssp TEEEEEETTTS---GGGHHHHH--HHHT-C--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHH
T ss_pred CEEEEEccceEEEccccHHHHH--HHHh-cCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHH
Confidence 4555444 5567787555542 1222 235688999999999999999998654 57999999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
|. ...++.++++|+.+..+ ...||.|++|.|... ..++..+..++++
T Consensus 148 Nk--v~~~i~~~~~D~~~~~~--~~~~drvim~lp~~~-----------------------------~~fl~~~~~~~~~ 194 (200)
T PF02475_consen 148 NK--VENRIEVINGDAREFLP--EGKFDRVIMNLPESS-----------------------------LEFLDAALSLLKE 194 (200)
T ss_dssp TT---TTTEEEEES-GGG-----TT-EEEEEE--TSSG-----------------------------GGGHHHHHHHEEE
T ss_pred cC--CCCeEEEEcCCHHHhcC--ccccCEEEECChHHH-----------------------------HHHHHHHHHHhcC
Confidence 74 34569999999977665 478999999987531 2456667778999
Q ss_pred CeEEE
Q psy2395 525 NGLLL 529 (570)
Q Consensus 525 gG~l~ 529 (570)
||++-
T Consensus 195 ~g~ih 199 (200)
T PF02475_consen 195 GGIIH 199 (200)
T ss_dssp EEEEE
T ss_pred CcEEE
Confidence 99874
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.6e-10 Score=110.05 Aligned_cols=141 Identities=11% Similarity=-0.005 Sum_probs=89.2
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc---------ccCCCCEEE
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL---------TKYNIPIKF 455 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~---------~~~~~~v~~ 455 (570)
.+++++.....+++.+|||+|||.|..++.||.. +.+|+|||+|+.+++.+........ .....++++
T Consensus 25 ~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~ 101 (218)
T PRK13255 25 LLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITI 101 (218)
T ss_pred HHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEE
Confidence 3444433222345679999999999999999965 4799999999999998743111000 001346899
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-E--
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-H-- 532 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~-- 532 (570)
.++|+++..+...+.||+|+----++.. ..+.-..+++.+.++|+|||.+++. .
T Consensus 102 ~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----------------------~~~~R~~~~~~l~~lL~pgG~~~l~~~~~ 158 (218)
T PRK13255 102 YCGDFFALTAADLADVDAVYDRAALIAL-----------------------PEEMRERYVQQLAALLPAGCRGLLVTLDY 158 (218)
T ss_pred EECcccCCCcccCCCeeEEEehHhHhhC-----------------------CHHHHHHHHHHHHHHcCCCCeEEEEEEEe
Confidence 9999987543323579999852211100 0123467889999999999964432 1
Q ss_pred cC---------CCHHHHHHHHHHCCCeeE
Q psy2395 533 GY---------NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 533 ~~---------~~~~~l~~ll~~~Gf~~i 552 (570)
+. -..+++.+++.. +|.+.
T Consensus 159 ~~~~~~gPp~~~~~~el~~~~~~-~~~i~ 186 (218)
T PRK13255 159 PQEELAGPPFSVSDEEVEALYAG-CFEIE 186 (218)
T ss_pred CCccCCCCCCCCCHHHHHHHhcC-CceEE
Confidence 11 125667777753 25544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.12 E-value=9.9e-09 Score=102.98 Aligned_cols=187 Identities=17% Similarity=0.206 Sum_probs=112.5
Q ss_pred eeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhc-CCCCCEEEEEC
Q psy2395 327 LIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKT-FEKKIKLLEMG 405 (570)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~-~~~~~~VLDlG 405 (570)
+.+.....++..+.+.++..+... .|... |-..++|.. ++..-- +..--+.+...+ .-.+.+|||||
T Consensus 56 v~i~~~~~l~~~~~~~l~~~l~~l---~PWRK--GPf~l~gi~--IDtEWr-----Sd~KW~rl~p~l~~L~gk~VLDIG 123 (315)
T PF08003_consen 56 VTIGSASDLSAEQRQQLEQLLKAL---MPWRK--GPFSLFGIH--IDTEWR-----SDWKWDRLLPHLPDLKGKRVLDIG 123 (315)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhh---CCccc--CCcccCCEe--eccccc-----ccchHHHHHhhhCCcCCCEEEEec
Confidence 455666778888888877776543 22211 111122222 221110 111112232322 22678999999
Q ss_pred CcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCC
Q psy2395 406 TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGD 485 (570)
Q Consensus 406 cGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~ 485 (570)
||+|+.+..++..++ ..|+|+|-++..+...+--.... +....+.++ ....+.++. .+.||+|+|---+++..
T Consensus 124 C~nGY~~frM~~~GA--~~ViGiDP~~lf~~QF~~i~~~l--g~~~~~~~l-plgvE~Lp~-~~~FDtVF~MGVLYHrr- 196 (315)
T PF08003_consen 124 CNNGYYSFRMLGRGA--KSVIGIDPSPLFYLQFEAIKHFL--GQDPPVFEL-PLGVEDLPN-LGAFDTVFSMGVLYHRR- 196 (315)
T ss_pred CCCcHHHHHHhhcCC--CEEEEECCChHHHHHHHHHHHHh--CCCccEEEc-Ccchhhccc-cCCcCEEEEeeehhccC-
Confidence 999999999998874 68999999887766544322221 122223333 223344554 47899999954322111
Q ss_pred cccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE----cCC--------------------CHHHHH
Q psy2395 486 IHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH----GYN--------------------QSNLVR 541 (570)
Q Consensus 486 ~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~----~~~--------------------~~~~l~ 541 (570)
..-..+..+...|++||.+++++ |.. ....+.
T Consensus 197 ------------------------~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~ 252 (315)
T PF08003_consen 197 ------------------------SPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAALK 252 (315)
T ss_pred ------------------------CHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHHH
Confidence 12466778888999999999854 111 257899
Q ss_pred HHHHHCCCeeEEEEe
Q psy2395 542 KLLFKYGFSDIKSWR 556 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~~ 556 (570)
.+|+++||..+++..
T Consensus 253 ~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 253 NWLERAGFKDVRCVD 267 (315)
T ss_pred HHHHHcCCceEEEec
Confidence 999999999998764
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.8e-10 Score=93.35 Aligned_cols=103 Identities=24% Similarity=0.462 Sum_probs=80.8
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
+|+|+|||+|.++..++. . ...+++++|+++.++..++++.... ...++.++.+|+.+.......+||+|++|+|
T Consensus 1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~ 75 (107)
T cd02440 1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPP 75 (107)
T ss_pred CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccc
Confidence 489999999999999987 2 3579999999999999998644331 2346899999997755323468999999998
Q ss_pred CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 480 YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 480 y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+... ......+++.+.+.|+|||.+++.
T Consensus 76 ~~~~------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 76 LHHL------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eeeh------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 7531 124578889999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.2e-09 Score=106.00 Aligned_cols=133 Identities=19% Similarity=0.268 Sum_probs=91.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...+ ...++.+..+|+ .. ..++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~-~~---~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAG--LAGNITFEVGDL-ES---LLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC--CccCcEEEEcCc-hh---ccCCcCEEE
Confidence 356799999999999999998764 579999999999999999987532 223689999995 22 236899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++-.++..+ ......++..+.+.+++++.+.+ .+.
T Consensus 133 ~~~~l~~~~-----------------------~~~~~~~l~~l~~~~~~~~~i~~-~~~~~~~~~~~~l~~~~~~~~~~~ 188 (230)
T PRK07580 133 CLDVLIHYP-----------------------QEDAARMLAHLASLTRGSLIFTF-APYTPLLALLHWIGGLFPGPSRTT 188 (230)
T ss_pred EcchhhcCC-----------------------HHHHHHHHHHHHhhcCCeEEEEE-CCccHHHHHHHHhccccCCccCCC
Confidence 964432111 01235566666665554443332 111
Q ss_pred ----CCHHHHHHHHHHCCCeeEEEEecCCCC
Q psy2395 535 ----NQSNLVRKLLFKYGFSDIKSWRDLSGI 561 (570)
Q Consensus 535 ----~~~~~l~~ll~~~Gf~~i~~~~D~~g~ 561 (570)
.....+.+++..+||+.+.+.....|.
T Consensus 189 ~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 219 (230)
T PRK07580 189 RIYPHREKGIRRALAAAGFKVVRTERISSGF 219 (230)
T ss_pred CccccCHHHHHHHHHHCCCceEeeeeccchh
Confidence 123568889999999988776655443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.5e-09 Score=109.57 Aligned_cols=178 Identities=12% Similarity=0.152 Sum_probs=113.2
Q ss_pred eeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH--
Q psy2395 369 VLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA-- 442 (570)
Q Consensus 369 ~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~-- 442 (570)
.+.++....+...+ .+.++.-.+.. ...+.+||++|||+|..+..+++.. +..+|++||+|+++++.|+...
T Consensus 119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~-h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L 196 (374)
T PRK01581 119 RLYLDKQLQFSSVDEQIYHEALVHPIMSK-VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPEL 196 (374)
T ss_pred EEEECCeeccccccHHHHHHHHHHHHHHh-CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhcccc
Confidence 46666555444433 33444433222 2456799999999999888887654 3579999999999999999631
Q ss_pred H-hhccc-CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh
Q psy2395 443 K-KKLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 443 ~-~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
. .+... .+.+++++.+|+.+.+....++||+|++|+|-.... .. . .-.-..+++.+.+
T Consensus 197 ~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~-----~~--------------~-~LyT~EFy~~~~~ 256 (374)
T PRK01581 197 VSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATE-----LL--------------S-TLYTSELFARIAT 256 (374)
T ss_pred chhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCcccc-----ch--------------h-hhhHHHHHHHHHH
Confidence 1 01001 245799999999887765557899999997531100 00 0 0112678899999
Q ss_pred ccccCeEEEEEEcCC--CH---HHHHHHHHHCCCeeEEEE---ecCCCCceEEEEE
Q psy2395 521 YLVKNGLLLIEHGYN--QS---NLVRKLLFKYGFSDIKSW---RDLSGIERVTQGK 568 (570)
Q Consensus 521 ~LkpgG~l~~~~~~~--~~---~~l~~ll~~~Gf~~i~~~---~D~~g~~R~~~~~ 568 (570)
.|+|||++++..+.. .. ..+.+.+++.|+...... +-+.+..-+++|.
T Consensus 257 ~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as 312 (374)
T PRK01581 257 FLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAA 312 (374)
T ss_pred hcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEe
Confidence 999999988754321 11 235667788887654322 2334434555554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=121.07 Aligned_cols=133 Identities=15% Similarity=0.233 Sum_probs=95.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh---hc-ccCCCCEEEEEcccccccccCCCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK---KL-TKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~---~~-~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
+++.+|||+|||+|..+..+++. +...+|+++|+|+++++.|++|... +. .-.+.+++++.+|+.+.+....++|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 45679999999999999998865 3236999999999999999995321 10 0123479999999987665445789
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CC---HHHHHHHHHH
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQ---SNLVRKLLFK 546 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~---~~~l~~ll~~ 546 (570)
|+|++|+|....+.. ..-+..++++.+.+.|+|||.+++..+. .. ...+.+.+++
T Consensus 375 DvIi~D~~~~~~~~~--------------------~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 375 DVIIVDLPDPSNPAL--------------------GKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred CEEEEeCCCCCCcch--------------------hccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 999999874321100 0012257888899999999999885532 22 3456777888
Q ss_pred CCC
Q psy2395 547 YGF 549 (570)
Q Consensus 547 ~Gf 549 (570)
.||
T Consensus 435 ~gf 437 (521)
T PRK03612 435 AGL 437 (521)
T ss_pred cCC
Confidence 899
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-10 Score=113.72 Aligned_cols=101 Identities=20% Similarity=0.314 Sum_probs=74.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC----CEEEEEcccccccccCCCceeE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI----PIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~----~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
+.+|||+|||+|.++..||+.+ +.|+|||+++.+++.|++..... -.... ++++.+.|+.. .. ++||.
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~d-P~~~~~~~y~l~~~~~~~E~-~~---~~fDa 161 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMD-PVLEGAIAYRLEYEDTDVEG-LT---GKFDA 161 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcC-chhccccceeeehhhcchhh-cc---cccce
Confidence 4689999999999999999775 79999999999999999995432 11112 35566666633 22 56999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+|---+. .......++..+.+.|+|||.+++.
T Consensus 162 Vvcsevle-------------------------HV~dp~~~l~~l~~~lkP~G~lfit 194 (282)
T KOG1270|consen 162 VVCSEVLE-------------------------HVKDPQEFLNCLSALLKPNGRLFIT 194 (282)
T ss_pred eeeHHHHH-------------------------HHhCHHHHHHHHHHHhCCCCceEee
Confidence 99932111 1123478888999999999999974
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.09 E-value=4e-09 Score=107.03 Aligned_cols=150 Identities=16% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc-cCCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT-KYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+.+.+||++|||+|.++..+++..+ ..+++++|+|+.+++.|++++..... ....+++++.+|..+.+....++||+|
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI 149 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI 149 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence 3456999999999999988887643 46899999999999999998764311 123468899999877665445789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHHHH---HHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLVRK---LLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l~~---ll~~~Gf 549 (570)
++|++...... ..+ ....+++.+.+.|+|||.+++..+. .....+.. .+.+. |
T Consensus 150 i~D~~~~~~~~--------------------~~l-~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl~~~-F 207 (270)
T TIGR00417 150 IVDSTDPVGPA--------------------ETL-FTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDVKEA-F 207 (270)
T ss_pred EEeCCCCCCcc--------------------cch-hHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHHHHH-C
Confidence 99876421110 000 2367888899999999999886432 23333333 34343 6
Q ss_pred eeEEEEec----C-CCCceEEEEE
Q psy2395 550 SDIKSWRD----L-SGIERVTQGK 568 (570)
Q Consensus 550 ~~i~~~~D----~-~g~~R~~~~~ 568 (570)
..+..+.- + .|..-+++|.
T Consensus 208 ~~v~~~~~~vp~~~~g~~~~~~as 231 (270)
T TIGR00417 208 PITEYYTANIPTYPSGLWTFTIGS 231 (270)
T ss_pred CCeEEEEEEcCccccchhEEEEEE
Confidence 66654432 1 2444555554
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3e-09 Score=109.41 Aligned_cols=144 Identities=16% Similarity=0.195 Sum_probs=96.3
Q ss_pred CeeeeecCCccccchhHHHHHHHHHhh---cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPRPETELLVDLIVKK---TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr~~t~~l~~~~~~~---~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
|..+.++.......++.....+.+... ..+++.+||++|||.|.++..+++. +...+|+.||+++.+++.|++.+.
T Consensus 58 g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 58 GKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred ceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhh
Confidence 556666555444333322222222211 1246789999999999999999876 335689999999999999999876
Q ss_pred hhccc-CCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 444 KKLTK-YNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 444 ~~~~~-~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
..... .+.+++++.+|+...+... .++||+|+++.+-... | ...-+...+++.+.+.
T Consensus 137 ~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~D~~dp~~-------------~--------~~~L~t~ef~~~~~~~ 195 (308)
T PLN02366 137 DLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIVDSSDPVG-------------P--------AQELFEKPFFESVARA 195 (308)
T ss_pred hhccccCCCceEEEEChHHHHHhhccCCCCCEEEEcCCCCCC-------------c--------hhhhhHHHHHHHHHHh
Confidence 42111 2447999999987765432 4689999997531100 0 0001236788999999
Q ss_pred cccCeEEEEEE
Q psy2395 522 LVKNGLLLIEH 532 (570)
Q Consensus 522 LkpgG~l~~~~ 532 (570)
|+|||.++...
T Consensus 196 L~pgGvlv~q~ 206 (308)
T PLN02366 196 LRPGGVVCTQA 206 (308)
T ss_pred cCCCcEEEECc
Confidence 99999997643
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=6e-10 Score=112.56 Aligned_cols=111 Identities=20% Similarity=0.345 Sum_probs=78.7
Q ss_pred CCCEEEEECCcccH----HHHHHHHhcCC----CcEEEEEeCCHHHHHHHHHHHHhh----cc-----------------
Q psy2395 397 KKIKLLEMGTGSGA----IAIAIAIYSKN----KIEIIATDISKFALKIAKKNAKKK----LT----------------- 447 (570)
Q Consensus 397 ~~~~VLDlGcGtG~----i~l~la~~~~~----~~~V~gvDis~~al~~A~~n~~~~----~~----------------- 447 (570)
++.+|||+|||||. +++.++..++. +.+|+|+|+|+.|++.|++.+... ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 56666655431 478999999999999999864210 00
Q ss_pred ---cCCCCEEEEEcccccccccCCCceeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 448 ---KYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 448 ---~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
....+|.|.++|+.+... +.++||+|+|.-- |++. .....+++.+.+.|
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~-~~~~fD~I~crnvl~yf~~-------------------------~~~~~~l~~l~~~L 232 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESP-PLGDFDLIFCRNVLIYFDE-------------------------PTQRKLLNRFAEAL 232 (264)
T ss_pred EChHHhCcCEEeeccCCCCCC-ccCCCCEEEechhHHhCCH-------------------------HHHHHHHHHHHHHh
Confidence 011258999999977433 3478999999422 2210 23468999999999
Q ss_pred ccCeEEEEEEc
Q psy2395 523 VKNGLLLIEHG 533 (570)
Q Consensus 523 kpgG~l~~~~~ 533 (570)
+|||++++...
T Consensus 233 ~pGG~L~lg~~ 243 (264)
T smart00138 233 KPGGYLFLGHS 243 (264)
T ss_pred CCCeEEEEECc
Confidence 99999998543
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.7e-09 Score=121.84 Aligned_cols=138 Identities=18% Similarity=0.167 Sum_probs=93.6
Q ss_pred cchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcC------------------------------------
Q psy2395 379 PRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSK------------------------------------ 420 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~------------------------------------ 420 (570)
|.|..+.+...++.... .++..++|++||||.+.+..|....
T Consensus 170 ~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 170 EAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 44555666666655421 3567999999999999998876311
Q ss_pred -----CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCcc
Q psy2395 421 -----NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLR 494 (570)
Q Consensus 421 -----~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~ 494 (570)
...+++|+|+++.+++.|+.|+..++ ....+.|.++|+.+..... .++||+|++||||...-..
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g--~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~-------- 319 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAG--VAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGE-------- 319 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcC--CCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCc--------
Confidence 01369999999999999999999864 3346899999997643221 2579999999999853210
Q ss_pred ccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 495 FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 495 ~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
..+-..+|..+-+.. +...+|+.+++.++...
T Consensus 320 ---------~~~l~~lY~~lg~~l-k~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 320 ---------EPALIALYSQLGRRL-KQQFGGWNAALFSSSPE 351 (702)
T ss_pred ---------hHHHHHHHHHHHHHH-HHhCCCCeEEEEeCCHH
Confidence 001123455544433 33448988888777643
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-09 Score=108.91 Aligned_cols=147 Identities=12% Similarity=0.165 Sum_probs=96.3
Q ss_pred CCCEEEEECCcccHH-HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAI-AIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i-~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
++.+|+|+|||.|.+ ++.++....++++++|+|+|+++++.|++++... .+...+++|..+|+.+.... .+.||+|+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~-l~~FDlVF 200 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTES-LKEYDVVF 200 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccc-cCCcCEEE
Confidence 678999999997744 4444433334689999999999999999999541 12345799999999774322 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHH---HHHHHHCCCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLV---RKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l---~~ll~~~Gf~~i 552 (570)
++ -.+..+ .....++++.+.+.|+|||.+++..+.+...-+ ...-.-.||...
T Consensus 201 ~~-ALi~~d-----------------------k~~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~LYp~v~~~~~~gf~~~ 256 (296)
T PLN03075 201 LA-ALVGMD-----------------------KEEKVKVIEHLGKHMAPGALLMLRSAHGARAFLYPVVDPCDLRGFEVL 256 (296)
T ss_pred Ee-cccccc-----------------------cccHHHHHHHHHHhcCCCcEEEEecccchHhhcCCCCChhhCCCeEEE
Confidence 95 211100 023578999999999999999987643321111 000112389886
Q ss_pred EEEecCCC-CceEEEEEe
Q psy2395 553 KSWRDLSG-IERVTQGKI 569 (570)
Q Consensus 553 ~~~~D~~g-~~R~~~~~~ 569 (570)
.++.-... ..-++++|+
T Consensus 257 ~~~~P~~~v~Nsvi~~r~ 274 (296)
T PLN03075 257 SVFHPTDEVINSVIIARK 274 (296)
T ss_pred EEECCCCCceeeEEEEEe
Confidence 65544333 334555553
|
|
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=102.72 Aligned_cols=130 Identities=16% Similarity=0.149 Sum_probs=90.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.-|||||||||..+..+... +...+|+||||.|++.|.+.-- .-.++.+|+-+.+++..+.||.+|+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e~--------egdlil~DMG~GlpfrpGtFDg~IS 118 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVEREL--------EGDLILCDMGEGLPFRPGTFDGVIS 118 (270)
T ss_pred CCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhhh--------hcCeeeeecCCCCCCCCCccceEEE
Confidence 4668999999999998888743 4689999999999999987221 1358889998889888899999988
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH---HHHHHHHHHCCCee
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS---NLVRKLLFKYGFSD 551 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~l~~ll~~~Gf~~ 551 (570)
=. .-.+........+.| ..-+..|+...+.+|++|+..++.+-+.+. +.+..-...+||.-
T Consensus 119 IS----AvQWLcnA~~s~~~P----------~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF~G 182 (270)
T KOG1541|consen 119 IS----AVQWLCNADKSLHVP----------KKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGFGG 182 (270)
T ss_pred ee----eeeeecccCccccCh----------HHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhccCC
Confidence 21 100100111111222 234567888899999999999997755444 44445555678763
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=119.56 Aligned_cols=125 Identities=16% Similarity=0.209 Sum_probs=91.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-cccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN-LQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fD~Iv 475 (570)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.++.... ...++.++++|+... ++.+.++||+|+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~-----~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESING-----HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhc-----cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45699999999999999999764 589999999999988765322 234689999998642 333347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC---------------CCHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY---------------NQSNL 539 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~---------------~~~~~ 539 (570)
++.++.... -+....+++.+.+.|+|||++++.- .. .....
T Consensus 109 ~~~~l~~l~-----------------------~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 165 (475)
T PLN02336 109 SNWLLMYLS-----------------------DKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRF 165 (475)
T ss_pred hhhhHHhCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHH
Confidence 987654221 0134788999999999999998731 10 12456
Q ss_pred HHHHHHHCCCeeE
Q psy2395 540 VRKLLFKYGFSDI 552 (570)
Q Consensus 540 l~~ll~~~Gf~~i 552 (570)
..+++.++||...
T Consensus 166 ~~~~f~~~~~~~~ 178 (475)
T PLN02336 166 YTKVFKECHTRDE 178 (475)
T ss_pred HHHHHHHheeccC
Confidence 6778888887643
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-09 Score=107.75 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=57.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.++.+|||+|||+|.++..++... ..+.+|+|+|+|+.|++.|+++... . ++.+.+++... ++..+++||
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~--~~~~~~~~~~~-l~~~~~~fD 131 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----P--GVTFRQAVSDE-LVAEGERFD 131 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----C--CCeEEEEeccc-ccccCCCcc
Confidence 356799999999999999887642 1246999999999999999887643 2 24455554422 222347899
Q ss_pred EEEECCCCC
Q psy2395 473 IIVANPPYI 481 (570)
Q Consensus 473 ~Iv~NPPy~ 481 (570)
+|++|..++
T Consensus 132 ~V~~~~~lh 140 (232)
T PRK06202 132 VVTSNHFLH 140 (232)
T ss_pred EEEECCeee
Confidence 999986554
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-09 Score=112.24 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=80.0
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|||++||+|.+++.++...+ ..+|+++|+|+.+++.+++|++.|+. .++.++++|+...+.. ..+||+|++|
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~---~~~~v~~~Da~~~l~~-~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL---ENEKVFNKDANALLHE-ERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC---CceEEEhhhHHHHHhh-cCCCCEEEEC
Confidence 46899999999999999998764 35899999999999999999998632 2477999998665432 3579999999
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
|| .. ...++..+...+++||++++..
T Consensus 133 P~-Gs----------------------------~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 133 PF-GS----------------------------PAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred CC-CC----------------------------cHHHHHHHHHHhcCCCEEEEEe
Confidence 86 21 1356666667789999999853
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.1e-09 Score=104.82 Aligned_cols=119 Identities=15% Similarity=0.181 Sum_probs=93.9
Q ss_pred chhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
.|++..++..++... ++.+||++||++|+-++.+|...+++++|+++|++++..+.|++|+...+ ...+|+++.||
T Consensus 64 ~~~~g~lL~~l~~~~--~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag--~~~~I~~~~G~ 139 (247)
T PLN02589 64 SADEGQFLNMLLKLI--NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAG--VAHKIDFREGP 139 (247)
T ss_pred CHHHHHHHHHHHHHh--CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEecc
Confidence 355555555555532 56799999999999999999877667899999999999999999999754 34579999999
Q ss_pred cccccccC------CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 460 WYNNLQNY------KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 460 ~~~~l~~~------~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+.+.++.. .++||+|+.+-- -..|...++.+.++|+|||.+++
T Consensus 140 a~e~L~~l~~~~~~~~~fD~iFiDad----------------------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 140 ALPVLDQMIEDGKYHGTFDFIFVDAD----------------------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHHHHhccccCCcccEEEecCC----------------------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 98866542 258999999521 13456777888889999999887
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.6e-09 Score=111.58 Aligned_cols=144 Identities=16% Similarity=0.154 Sum_probs=99.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+.++.+|||+|||.|.=+..+|....+...|+++|+++..++..++|+.+.+. .++.+...|...........||.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---~nv~v~~~D~~~~~~~~~~~fD~I 187 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---SNVALTHFDGRVFGAALPETFDAI 187 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCchhhhhhhchhhcCeE
Confidence 35788999999999999999998776567999999999999999999998532 247888888754322334679999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCC----ChHHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHHHHH
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSN----GLSSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKLLFK 546 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~----gl~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ll~~ 546 (570)
+.|+|-.-..-.. ..|.....-... -...-.+++..+.++|||||++++.+.. .+...+..++++
T Consensus 188 LvDaPCSG~G~~r-------k~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 188 LLDAPCSGEGTVR-------KDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred EEcCCCCCCcccc-------cCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999965333221 122211111101 1123468999999999999999886543 223344555665
Q ss_pred CC
Q psy2395 547 YG 548 (570)
Q Consensus 547 ~G 548 (570)
++
T Consensus 261 ~~ 262 (470)
T PRK11933 261 YP 262 (470)
T ss_pred CC
Confidence 53
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-09 Score=113.52 Aligned_cols=159 Identities=21% Similarity=0.276 Sum_probs=112.1
Q ss_pred CCceeecCc----ccccCeeeeecCCccccc--hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEE
Q psy2395 354 EPIAYIIGK----KEFYGLVLNITSDVLIPR--PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEII 426 (570)
Q Consensus 354 ~p~~~i~g~----~~f~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~ 426 (570)
.|++++.|. -.+.|++|.++|+.|.+. ...+.+...+-++.. +.+..++|++||||.+++++|+.. .+|+
T Consensus 333 ~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~Vi 409 (534)
T KOG2187|consen 333 KPLQLVGGDPYITESLLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVI 409 (534)
T ss_pred CCeEEEccccEEEeecCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccc---ccee
Confidence 566665554 356799999999999988 677788777776643 456789999999999999999654 6899
Q ss_pred EEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC----Ccee-EEEECCCCCCCCCcccCCCCccccccccc
Q psy2395 427 ATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK----KLFN-IIVANPPYIPKGDIHLNKGDLRFEPINAL 501 (570)
Q Consensus 427 gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~----~~fD-~Iv~NPPy~~~~~~~~~~~~~~~ep~~al 501 (570)
||+++|++++.|+.|+..|+. .+++|++|-+.+..+... ++=+ +++.|||-.
T Consensus 410 GvEi~~~aV~dA~~nA~~Ngi---sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~-------------------- 466 (534)
T KOG2187|consen 410 GVEISPDAVEDAEKNAQINGI---SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK-------------------- 466 (534)
T ss_pred eeecChhhcchhhhcchhcCc---cceeeeecchhhccchhcccCCCCCceEEEECCCcc--------------------
Confidence 999999999999999998632 369999995444332211 2345 778888732
Q ss_pred cccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHH
Q psy2395 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLF 545 (570)
Q Consensus 502 ~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~ 545 (570)
|+ ...+++....+-.+--.+++.+... ....+..++.
T Consensus 467 -----Gl--h~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~ 504 (534)
T KOG2187|consen 467 -----GL--HMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCS 504 (534)
T ss_pred -----cc--cHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhc
Confidence 22 2455665555555666666665432 3445555554
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.99 E-value=5e-09 Score=100.97 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=57.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~I 474 (570)
+++.+|||+|||+|.++..++... ...++|+|+++.+++.|+.+ +++++++|+.+.++ ..+++||+|
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~----------~~~~~~~d~~~~l~~~~~~sfD~V 79 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR----------GVNVIQGDLDEGLEAFPDKSFDYV 79 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc----------CCeEEEEEhhhcccccCCCCcCEE
Confidence 356799999999999999887654 46789999999999888531 25788888865332 334689999
Q ss_pred EECCCCCC
Q psy2395 475 VANPPYIP 482 (570)
Q Consensus 475 v~NPPy~~ 482 (570)
++|.++..
T Consensus 80 i~~~~l~~ 87 (194)
T TIGR02081 80 ILSQTLQA 87 (194)
T ss_pred EEhhHhHc
Confidence 99977543
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-09 Score=111.08 Aligned_cols=81 Identities=21% Similarity=0.311 Sum_probs=66.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++... .+|+|+|+|+.+++.+++++..++ ...+++++++|+.+... ..||+|+
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~--~~~~v~ii~~Dal~~~~---~~~d~Vv 106 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSP--LASKLEVIEGDALKTEF---PYFDVCV 106 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECCHhhhcc---cccCEEE
Confidence 467899999999999999998764 579999999999999999987531 23469999999976322 4699999
Q ss_pred ECCCCCCCC
Q psy2395 476 ANPPYIPKG 484 (570)
Q Consensus 476 ~NPPy~~~~ 484 (570)
+|+||.-..
T Consensus 107 aNlPY~Ist 115 (294)
T PTZ00338 107 ANVPYQISS 115 (294)
T ss_pred ecCCcccCc
Confidence 999997543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-09 Score=109.47 Aligned_cols=78 Identities=19% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++. ..+++++++|+.+. +..+-.+|.||
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~~-~~~~~~~~~vv 110 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFA------EDNLTIIEGDALKV-DLSELQPLKVV 110 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhc------cCceEEEEChhhcC-CHHHcCcceEE
Confidence 467799999999999999999875 389999999999999998764 24699999999763 22111159999
Q ss_pred ECCCCCCC
Q psy2395 476 ANPPYIPK 483 (570)
Q Consensus 476 ~NPPy~~~ 483 (570)
+||||...
T Consensus 111 ~NlPY~is 118 (272)
T PRK00274 111 ANLPYNIT 118 (272)
T ss_pred EeCCccch
Confidence 99999754
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=107.46 Aligned_cols=77 Identities=19% Similarity=0.278 Sum_probs=64.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++.. ..+++++++|+.+. +. ..||.|+
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~-----~~~v~ii~~D~~~~-~~--~~~d~Vv 96 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA-----AGNVEIIEGDALKV-DL--PEFNKVV 96 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc-----CCCEEEEEeccccC-Cc--hhceEEE
Confidence 457899999999999999999774 5899999999999999988753 34699999999763 22 3589999
Q ss_pred ECCCCCCC
Q psy2395 476 ANPPYIPK 483 (570)
Q Consensus 476 ~NPPy~~~ 483 (570)
+||||...
T Consensus 97 ~NlPy~i~ 104 (258)
T PRK14896 97 SNLPYQIS 104 (258)
T ss_pred EcCCcccC
Confidence 99999754
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.2e-09 Score=105.98 Aligned_cols=144 Identities=20% Similarity=0.245 Sum_probs=105.8
Q ss_pred Ceeeeec--CCccccchhHHH--HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 367 GLVLNIT--SDVLIPRPETEL--LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 367 ~~~~~v~--~~~~~pr~~t~~--l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
|..|.++ .-+|.|+-.++. +.++. .++.+|+|+.||.|.+++.+|+.+. .+|+|+|+||.+++..++|+
T Consensus 159 G~~f~vD~~Kv~Fsprl~~ER~Rva~~v-----~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 159 GCRFKVDVAKVYFSPRLSTERARVAELV-----KEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred CEEEEEchHHeEECCCchHHHHHHHhhh-----cCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHH
Confidence 4555555 567888865553 33322 3588999999999999999998874 45999999999999999999
Q ss_pred HhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
+.|+ ....+..++||+.+..+.. +.||-|++|-|... ..++..+.+.+
T Consensus 232 ~LN~--v~~~v~~i~gD~rev~~~~-~~aDrIim~~p~~a-----------------------------~~fl~~A~~~~ 279 (341)
T COG2520 232 RLNK--VEGRVEPILGDAREVAPEL-GVADRIIMGLPKSA-----------------------------HEFLPLALELL 279 (341)
T ss_pred HhcC--ccceeeEEeccHHHhhhcc-ccCCEEEeCCCCcc-----------------------------hhhHHHHHHHh
Confidence 9874 3445999999997765532 68999999876421 45667777889
Q ss_pred ccCeEEEE-EEcCC-C-----HHHHHHHHHHCCC
Q psy2395 523 VKNGLLLI-EHGYN-Q-----SNLVRKLLFKYGF 549 (570)
Q Consensus 523 kpgG~l~~-~~~~~-~-----~~~l~~ll~~~Gf 549 (570)
++||++-+ ++... . ...+.....+.|+
T Consensus 280 k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~ 313 (341)
T COG2520 280 KDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGY 313 (341)
T ss_pred hcCcEEEEEeccchhhcccchHHHHHHHHhhccC
Confidence 99999865 33322 2 3556666666664
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-09 Score=100.48 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=58.2
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-Cc-eeEEEEC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KL-FNIIVAN 477 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~-fD~Iv~N 477 (570)
.|+|++||.|..++.+|+.+ .+|+|+|++|..++.|+.|++-.| ...++.|+++|+++.+.... .. ||+|+++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYG--v~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYG--VADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT---GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 69999999999999999886 489999999999999999999753 24479999999988665432 22 8999999
Q ss_pred CCCCC
Q psy2395 478 PPYIP 482 (570)
Q Consensus 478 PPy~~ 482 (570)
|||.-
T Consensus 77 PPWGG 81 (163)
T PF09445_consen 77 PPWGG 81 (163)
T ss_dssp --BSS
T ss_pred CCCCC
Confidence 99974
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=95.79 Aligned_cols=70 Identities=13% Similarity=0.248 Sum_probs=58.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~I 474 (570)
+++.+|||+|||.|.+...|...- +.+++|+|++++.+..+.++ .+.++++|+.+.+. .++++||.|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f~d~sFD~V 79 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADFPDQSFDYV 79 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhCCCCCccEE
Confidence 578999999999999998888753 68999999999998776543 26799999988775 445899999
Q ss_pred EEC
Q psy2395 475 VAN 477 (570)
Q Consensus 475 v~N 477 (570)
|++
T Consensus 80 Ils 82 (193)
T PF07021_consen 80 ILS 82 (193)
T ss_pred ehH
Confidence 984
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=106.64 Aligned_cols=102 Identities=25% Similarity=0.269 Sum_probs=82.4
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|||+.||||..++.++.+.+...+|+++|+|+.+++.+++|++.|+. .++.++++|+...+.....+||+|+.|
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~---~~~~v~~~Da~~~l~~~~~~fDvIdlD 121 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV---ENIEVPNEDAANVLRYRNRKFHVIDID 121 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence 35899999999999999998743246899999999999999999997631 258999999977665434679999999
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
| |... ..++..+.+.+++||++++.
T Consensus 122 P-fGs~----------------------------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 122 P-FGTP----------------------------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C-CCCc----------------------------HHHHHHHHHhcccCCEEEEE
Confidence 9 4311 35677777789999999986
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.7e-09 Score=101.71 Aligned_cols=137 Identities=15% Similarity=0.059 Sum_probs=90.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh-------h--cccCCCCEE
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK-------K--LTKYNIPIK 454 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~-------~--~~~~~~~v~ 454 (570)
..|++++......++.+||++|||.|..+..||..+ .+|+|+|+|+.+++.+.+.... + ....+.+++
T Consensus 30 p~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~ 106 (226)
T PRK13256 30 EFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE 106 (226)
T ss_pred HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence 445555544333456799999999999999999764 6899999999999998652110 0 001234699
Q ss_pred EEEcccccccc--cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 455 FIKSNWYNNLQ--NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 455 ~~~~D~~~~l~--~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++++|+++..+ ...++||+|+----|+. ++ -+.-.+.++.+.+.|+|||.+++.+
T Consensus 107 ~~~gD~f~l~~~~~~~~~fD~VyDra~~~A------lp-----------------p~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 107 IYVADIFNLPKIANNLPVFDIWYDRGAYIA------LP-----------------NDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred EEEccCcCCCccccccCCcCeeeeehhHhc------CC-----------------HHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 99999988532 22257999875222211 01 1234678888999999999987643
Q ss_pred -cCC----------CHHHHHHHHHH
Q psy2395 533 -GYN----------QSNLVRKLLFK 546 (570)
Q Consensus 533 -~~~----------~~~~l~~ll~~ 546 (570)
... ..+++.+++..
T Consensus 164 ~~~~~~~~GPPf~v~~~e~~~lf~~ 188 (226)
T PRK13256 164 MEHDKKSQTPPYSVTQAELIKNFSA 188 (226)
T ss_pred EecCCCCCCCCCcCCHHHHHHhccC
Confidence 111 24567777754
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-08 Score=111.39 Aligned_cols=167 Identities=21% Similarity=0.225 Sum_probs=109.8
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN---KIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
..+|+|+..+++|++.+.. .+..+|+|.+||||.+.+..++.... ...++|.|+++....+|+.|+-.++...
T Consensus 166 GEfyTP~~v~~liv~~l~~---~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~- 241 (489)
T COG0286 166 GEFYTPREVSELIVELLDP---EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG- 241 (489)
T ss_pred CccCChHHHHHHHHHHcCC---CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-
Confidence 4568999999999988753 34569999999999998887765531 2679999999999999999998764321
Q ss_pred CCEEEEEccccccccc----CCCceeEEEECCCCCCCCCcccCCCCccccccccccc-cCCChHHHHHHHHHHhhccccC
Q psy2395 451 IPIKFIKSNWYNNLQN----YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTD-YSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~----~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~-~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
.+....+|-+..... ..++||+|++||||....+......... ..+....+ ....-.....+++.+...|+||
T Consensus 242 -~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~ 319 (489)
T COG0286 242 -DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQ-DERFFFYGVFPTKNSADLAFLQHILYKLKPG 319 (489)
T ss_pred -cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccc-cccccccCCCCCCCchHHHHHHHHHHhcCCC
Confidence 456677776543322 2267999999999974443322111111 11111111 1111122367788888899999
Q ss_pred eEEEEEEcCC------CHHHHHHHHHH
Q psy2395 526 GLLLIEHGYN------QSNLVRKLLFK 546 (570)
Q Consensus 526 G~l~~~~~~~------~~~~l~~ll~~ 546 (570)
|+..++++.+ ....+++.+.+
T Consensus 320 g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 320 GRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred ceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 9877766542 34556666655
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-09 Score=102.85 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=88.0
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv~ 476 (570)
=.++||+|||||..+..+-.+. .+++|||||..|++.|.+.-- --++.++|+...++ ..+++||+|++
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~--------YD~L~~Aea~~Fl~~~~~er~DLi~A 194 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGL--------YDTLYVAEAVLFLEDLTQERFDLIVA 194 (287)
T ss_pred cceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccc--------hHHHHHHHHHHHhhhccCCcccchhh
Confidence 4689999999999999987554 579999999999999975421 12344555543333 22478999998
Q ss_pred C--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc--C-C-------------CHH
Q psy2395 477 N--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG--Y-N-------------QSN 538 (570)
Q Consensus 477 N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~--~-~-------------~~~ 538 (570)
- .||. ..+..++..+...|+|||.|.|.+- . + ...
T Consensus 195 aDVl~Yl---------------------------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~ 247 (287)
T COG4976 195 ADVLPYL---------------------------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSES 247 (287)
T ss_pred hhHHHhh---------------------------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchH
Confidence 3 4444 2346788889999999999998541 1 1 135
Q ss_pred HHHHHHHHCCCeeEEEEe
Q psy2395 539 LVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 539 ~l~~ll~~~Gf~~i~~~~ 556 (570)
.++..+...||.+|.+.+
T Consensus 248 YVr~~l~~~Gl~~i~~~~ 265 (287)
T COG4976 248 YVRALLAASGLEVIAIED 265 (287)
T ss_pred HHHHHHHhcCceEEEeec
Confidence 688899999999987654
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.6e-09 Score=100.96 Aligned_cols=142 Identities=17% Similarity=0.143 Sum_probs=90.9
Q ss_pred HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-HHHhhc--------ccCCCCEEEE
Q psy2395 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK-NAKKKL--------TKYNIPIKFI 456 (570)
Q Consensus 386 l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~-n~~~~~--------~~~~~~v~~~ 456 (570)
|++++......++.+||.+|||.|.....||..+ .+|+|+|+|+.|++.|.+ |..... .....+|+++
T Consensus 26 L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 26 LVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp HHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred HHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 3344333233566799999999999999999764 799999999999999843 221000 0012358999
Q ss_pred EcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcC-
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGY- 534 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~- 534 (570)
++|+++..+...++||+|+=---+.. +++ +.-.+..+.+.++|+|||.+++. +-+
T Consensus 103 ~gDfF~l~~~~~g~fD~iyDr~~l~A------lpp-----------------~~R~~Ya~~l~~ll~p~g~~lLi~l~~~ 159 (218)
T PF05724_consen 103 CGDFFELPPEDVGKFDLIYDRTFLCA------LPP-----------------EMRERYAQQLASLLKPGGRGLLITLEYP 159 (218)
T ss_dssp ES-TTTGGGSCHHSEEEEEECSSTTT------S-G-----------------GGHHHHHHHHHHCEEEEEEEEEEEEES-
T ss_pred EcccccCChhhcCCceEEEEeccccc------CCH-----------------HHHHHHHHHHHHHhCCCCcEEEEEEEcC
Confidence 99999854433358999997332221 111 23367888899999999994432 211
Q ss_pred ----------CCHHHHHHHHHHCCCeeEEE
Q psy2395 535 ----------NQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 535 ----------~~~~~l~~ll~~~Gf~~i~~ 554 (570)
-..+++.+++. .+|.+...
T Consensus 160 ~~~~~GPPf~v~~~ev~~l~~-~~f~i~~l 188 (218)
T PF05724_consen 160 QGEMEGPPFSVTEEEVRELFG-PGFEIEEL 188 (218)
T ss_dssp CSCSSSSS----HHHHHHHHT-TTEEEEEE
T ss_pred CcCCCCcCCCCCHHHHHHHhc-CCcEEEEE
Confidence 12467777776 67776443
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-08 Score=95.36 Aligned_cols=135 Identities=21% Similarity=0.244 Sum_probs=94.0
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNIIV 475 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~Iv 475 (570)
...+||||||.|.+.+.+|...| +..++|+|++...+..|...+... .-.++.++++|+...+. ..++++|.|.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~ 93 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIY 93 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEE
Confidence 34899999999999999999987 799999999999999999988875 33479999999976443 1237999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHC--CCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKY--GFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~--Gf~~i 552 (570)
.|-| .+.+. .+|.. ..+ .-..++..+.+.|+|||.+.+.+... ....+.+.+... +|..+
T Consensus 94 i~FP---DPWpK-----~rH~k-rRl--------~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 94 INFP---DPWPK-----KRHHK-RRL--------VNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp EES--------S-----GGGGG-GST--------TSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHSTTEEEE
T ss_pred EeCC---CCCcc-----cchhh-hhc--------CCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCcCeEEc
Confidence 9854 11110 01100 011 12678889999999999999877553 356667777773 67665
Q ss_pred E
Q psy2395 553 K 553 (570)
Q Consensus 553 ~ 553 (570)
.
T Consensus 157 ~ 157 (195)
T PF02390_consen 157 E 157 (195)
T ss_dssp -
T ss_pred c
Confidence 3
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.84 E-value=7.4e-08 Score=100.15 Aligned_cols=140 Identities=15% Similarity=0.250 Sum_probs=95.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc-CCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+.+.+||.+|+|.|..+..+++..+ ..+|+.||+++..++.|++++..+... .+.+++++.+|+...+....++||+|
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI 180 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI 180 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence 3567999999999999998887543 468999999999999999998643211 24579999999988776555789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH-HHhhccccCeEEEEEEcC----CCHHH---HHHHHHH
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK-NASKYLVKNGLLLIEHGY----NQSNL---VRKLLFK 546 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~-~~~~~LkpgG~l~~~~~~----~~~~~---l~~ll~~ 546 (570)
+++.+- +... .|-..| +-..+++ .+.+.|+|||++++..+. ...+. +.+.+.+
T Consensus 181 i~D~~d-p~~~----------~~~~~L--------yt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~ 241 (336)
T PLN02823 181 IGDLAD-PVEG----------GPCYQL--------YTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ 241 (336)
T ss_pred EecCCC-cccc----------Ccchhh--------ccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence 998531 1000 000001 1246776 788999999999876543 12333 3333443
Q ss_pred CCCeeEEEEe
Q psy2395 547 YGFSDIKSWR 556 (570)
Q Consensus 547 ~Gf~~i~~~~ 556 (570)
-|..+..+.
T Consensus 242 -vF~~v~~y~ 250 (336)
T PLN02823 242 -VFKYVVPYT 250 (336)
T ss_pred -hCCCEEEEE
Confidence 366665554
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=95.66 Aligned_cols=109 Identities=21% Similarity=0.249 Sum_probs=79.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE-EEEcccccccccCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK-FIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~-~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
...||++|||||..--..- . .+..+|+++|-++.|-+.|.+.+..+ ...++. |+.++..+.....++++|.||+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~-~-~p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~d~s~DtVV~ 151 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP-W-KPINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLADGSYDTVVC 151 (252)
T ss_pred ccceEEecccCCCCccccc-C-CCCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccccCCeeeEEE
Confidence 4578999999998754432 1 14789999999999999999998874 334566 8999985533244689999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCC
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQ 536 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~ 536 (570)
-. .|... +...+.+++..++|+|||++++ +++..+
T Consensus 152 Tl---------------------vLCSv----e~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 152 TL---------------------VLCSV----EDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred EE---------------------EEecc----CCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 32 11221 2347889999999999999876 665443
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.1e-08 Score=92.92 Aligned_cols=127 Identities=20% Similarity=0.366 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhhc-------CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 381 PETELLVDLIVKKT-------FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 381 ~~t~~l~~~~~~~~-------~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
|.+..|..++.... ..++.+|||+|||+|..++.++.... ..+|+.+|.++ .+...+.|+..|+.....++
T Consensus 22 ~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 22 PAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp -HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred chHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccc
Confidence 55566666666531 23678999999999999999998842 57999999999 99999999998642234568
Q ss_pred EEEEccccccc--c-cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 454 KFIKSNWYNNL--Q-NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 454 ~~~~~D~~~~l--~-~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.+..-||-+.. . ....+||+|++. ++-|.+ +.+..++..+.++|+++|.+++
T Consensus 100 ~v~~L~Wg~~~~~~~~~~~~~D~Ilas--------------Dv~Y~~-----------~~~~~L~~tl~~ll~~~~~vl~ 154 (173)
T PF10294_consen 100 SVRPLDWGDELDSDLLEPHSFDVILAS--------------DVLYDE-----------ELFEPLVRTLKRLLKPNGKVLL 154 (173)
T ss_dssp EEEE--TTS-HHHHHHS-SSBSEEEEE--------------S--S-G-----------GGHHHHHHHHHHHBTT-TTEEE
T ss_pred cCcEEEecCcccccccccccCCEEEEe--------------cccchH-----------HHHHHHHHHHHHHhCCCCEEEE
Confidence 88888885533 1 112589999982 122222 3567888889999999999777
Q ss_pred EEcC
Q psy2395 531 EHGY 534 (570)
Q Consensus 531 ~~~~ 534 (570)
....
T Consensus 155 ~~~~ 158 (173)
T PF10294_consen 155 AYKR 158 (173)
T ss_dssp EEE-
T ss_pred EeCE
Confidence 6654
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-08 Score=96.36 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=42.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
.+..+|||||-+|.+++.+|+.+. ...|.|+||++..+..|++|++.
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccc
Confidence 467899999999999999999875 46899999999999999999864
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.7e-07 Score=96.06 Aligned_cols=166 Identities=19% Similarity=0.219 Sum_probs=111.3
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
..|.+++...+..+...++. +.++.+|||+|++.|.=+..+|....+ +..|+++|+|+.-+...+.|+++.|. .
T Consensus 134 ~~G~~~vQd~sS~l~a~~L~--p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~---~ 208 (355)
T COG0144 134 AEGLIYVQDEASQLPALVLD--PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV---R 208 (355)
T ss_pred hceEEEEcCHHHHHHHHHcC--CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC---C
Confidence 45566666666666555543 467899999999999999999987753 35679999999999999999998532 2
Q ss_pred CEEEEEcccccccc--cCCCceeEEEECCCCCCCCCcccCCCCc-cccccccccccCCChHHHHHHHHHHhhccccCeEE
Q psy2395 452 PIKFIKSNWYNNLQ--NYKKLFNIIVANPPYIPKGDIHLNKGDL-RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 452 ~v~~~~~D~~~~l~--~~~~~fD~Iv~NPPy~~~~~~~~~~~~~-~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l 528 (570)
++.+.+.|...... ...++||.|+.++|-.........+... ...|.- + ..-.....+++..+.++|||||.+
T Consensus 209 nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~-i---~~l~~lQ~~iL~~a~~~lk~GG~L 284 (355)
T COG0144 209 NVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPED-I---AELAKLQKEILAAALKLLKPGGVL 284 (355)
T ss_pred ceEEEecccccccccccccCcCcEEEECCCCCCCcccccCccccccCCHHH-H---HHHHHHHHHHHHHHHHhcCCCCEE
Confidence 37788877643221 1113699999999965544332222221 111110 0 001134568999999999999999
Q ss_pred EEEEcC----CCHHHHHHHHHHC
Q psy2395 529 LIEHGY----NQSNLVRKLLFKY 547 (570)
Q Consensus 529 ~~~~~~----~~~~~l~~ll~~~ 547 (570)
++.+.. .+...+..++.+.
T Consensus 285 VYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 285 VYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred EEEccCCchhcCHHHHHHHHHhC
Confidence 886533 4555666777665
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.1e-08 Score=96.57 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=62.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee---
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN--- 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD--- 472 (570)
.++.+|||+|||+|.++..+++.+ ..|+++|+|+.+++.++.++.. ..+++++++|+.+... ..||
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~~~---~~~d~~~ 96 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKVDL---PDFPKQL 96 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcCCh---hHcCCcc
Confidence 467799999999999999999876 3699999999999999988742 3468999999966332 2466
Q ss_pred EEEECCCCCC
Q psy2395 473 IIVANPPYIP 482 (570)
Q Consensus 473 ~Iv~NPPy~~ 482 (570)
+|++|+||..
T Consensus 97 ~vvsNlPy~i 106 (253)
T TIGR00755 97 KVVSNLPYNI 106 (253)
T ss_pred eEEEcCChhh
Confidence 9999999874
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.3e-07 Score=89.79 Aligned_cols=132 Identities=19% Similarity=0.146 Sum_probs=102.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-ccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~~~~~fD~I 474 (570)
.++.+|++-|+|||.++.++++...+..+++.+|......+.|++.++..+ .+.++++..-|+...- ......+|.|
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg--i~~~vt~~hrDVc~~GF~~ks~~aDaV 181 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG--IGDNVTVTHRDVCGSGFLIKSLKADAV 181 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC--CCcceEEEEeecccCCccccccccceE
Confidence 688999999999999999999988777899999999999999999999865 5667999999985522 2114689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHHHHHHHHCCCeeE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l~~ll~~~Gf~~i 552 (570)
+.+.|- | -..+..++++||.+|.-++.+.+ .|.....+.|.++||..+
T Consensus 182 FLDlPa----------------P--------------w~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i 231 (314)
T KOG2915|consen 182 FLDLPA----------------P--------------WEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEI 231 (314)
T ss_pred EEcCCC----------------h--------------hhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceE
Confidence 998662 1 12334555578877754444433 667777888899999999
Q ss_pred EEEecCC
Q psy2395 553 KSWRDLS 559 (570)
Q Consensus 553 ~~~~D~~ 559 (570)
....++.
T Consensus 232 ~~vEv~~ 238 (314)
T KOG2915|consen 232 ETVEVLL 238 (314)
T ss_pred EEEEeeh
Confidence 9888776
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.2e-08 Score=94.64 Aligned_cols=129 Identities=21% Similarity=0.258 Sum_probs=92.5
Q ss_pred CEEEEECCcccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---ccCCCceeEE
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---QNYKKLFNII 474 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---~~~~~~fD~I 474 (570)
.+||++|||.|+....+.+..+. +..|++.|.||.|++..++|... ...++.-.+.|+...- +...+++|+|
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~----~e~~~~afv~Dlt~~~~~~~~~~~svD~i 148 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY----DESRVEAFVWDLTSPSLKEPPEEGSVDII 148 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc----chhhhcccceeccchhccCCCCcCccceE
Confidence 48999999999999999877641 37999999999999999999874 2345666667765432 1223789988
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcCC------------------
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGYN------------------ 535 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~~------------------ 535 (570)
++---.. | -+-+-+...++++.++|||||.+++- .|..
T Consensus 149 t~IFvLS------------------A-----i~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfY 205 (264)
T KOG2361|consen 149 TLIFVLS------------------A-----IHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFY 205 (264)
T ss_pred EEEEEEe------------------c-----cChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceE
Confidence 7721100 0 11235678999999999999999862 1211
Q ss_pred -----------CHHHHHHHHHHCCCeeEEE
Q psy2395 536 -----------QSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 536 -----------~~~~l~~ll~~~Gf~~i~~ 554 (570)
..+.+.+++.++||..++.
T Consensus 206 VRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 206 VRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred EccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 1478899999999986543
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.4e-07 Score=91.44 Aligned_cols=162 Identities=23% Similarity=0.252 Sum_probs=110.9
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+.....+..++-.++. +.++..|||+|+|.|.=+..++........|++.|+++.-+...+.|+++.+ ..++
T Consensus 64 ~G~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g---~~~v 138 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLG---VFNV 138 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----SSE
T ss_pred CCcEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcC---CceE
Confidence 4555555555555544443 4577899999999999999999887657899999999999999999999853 2357
Q ss_pred EEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhcc----cc
Q psy2395 454 KFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYL----VK 524 (570)
Q Consensus 454 ~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~L----kp 524 (570)
.+...|.....+.. ...||.|+.++|-....... ..|..-+...... ...-.+++..+.+++ +|
T Consensus 139 ~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G~i~-------r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~ 211 (283)
T PF01189_consen 139 IVINADARKLDPKKPESKFDRVLVDAPCSGLGTIR-------RNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP 211 (283)
T ss_dssp EEEESHHHHHHHHHHTTTEEEEEEECSCCCGGGTT-------TCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE
T ss_pred EEEeeccccccccccccccchhhcCCCccchhhhh-------hccchhhcccccccchHHHHHHHHHHHHHHhhcccccC
Confidence 78878886653322 24699999999965433221 1222111111111 133468999999999 99
Q ss_pred CeEEEEEE----cCCCHHHHHHHHHHC
Q psy2395 525 NGLLLIEH----GYNQSNLVRKLLFKY 547 (570)
Q Consensus 525 gG~l~~~~----~~~~~~~l~~ll~~~ 547 (570)
||++++.+ +..+...+..+++++
T Consensus 212 gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 212 GGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 99998866 335566667777765
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-07 Score=87.35 Aligned_cols=121 Identities=25% Similarity=0.257 Sum_probs=90.2
Q ss_pred EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCC
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy 480 (570)
|+|+||--|++++.|.+.+. ..+++++|+++..++.|+.|+..++ +..+++++.+|.++.+.. .+..|.|+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~--l~~~i~~rlgdGL~~l~~-~e~~d~ivI---- 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYG--LEDRIEVRLGDGLEVLKP-GEDVDTIVI---- 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT---TTTEEEEE-SGGGG--G-GG---EEEE----
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcC--CcccEEEEECCcccccCC-CCCCCEEEE----
Confidence 68999999999999998875 5689999999999999999999864 455799999999887764 223788877
Q ss_pred CCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 481 ~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
| | -|-..+.++++.....+.....|++ .|..+...++++|.++||..+.
T Consensus 73 -------------------A---G-MGG~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 73 -------------------A---G-MGGELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLYENGFEIID 121 (205)
T ss_dssp -------------------E---E-E-HHHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHHHTTEEEEE
T ss_pred -------------------e---c-CCHHHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHHHCCCEEEE
Confidence 1 1 1335788999998888776656554 6778999999999999998764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-07 Score=90.26 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=88.5
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC-CEEEEEcccccccccC--CCceeEEE
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQNY--KKLFNIIV 475 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~~--~~~fD~Iv 475 (570)
..+||||||.|.+.+.+|+..| ...++|||+....+..|.+.+.+ .+. ++.++++|+...+... +++.|-|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~----~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKE----LGLKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHH----cCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 5899999999999999999987 68999999999999999999887 456 8999999997755432 35999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
.|-| .++. -.+|.-+. -....+++.+.+.|+|||.+.+.+...
T Consensus 125 i~FP---DPWp-----KkRH~KRR---------l~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 125 INFP---DPWP-----KKRHHKRR---------LTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EECC---CCCC-----Cccccccc---------cCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 9854 1111 01111110 123688999999999999999877553
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-07 Score=98.78 Aligned_cols=105 Identities=14% Similarity=0.221 Sum_probs=73.1
Q ss_pred CCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+..|+|+|||+|.++...++.+ ....+|+|||.|+.|+...+..+..++ .+.+|+++++|+.+.... .++|+|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~--w~~~V~vi~~d~r~v~lp--ekvDII 262 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANG--WGDKVTVIHGDMREVELP--EKVDII 262 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTT--TTTTEEEEES-TTTSCHS--S-EEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcC--CCCeEEEEeCcccCCCCC--CceeEE
Confidence 4689999999999987776543 124699999999999988877655543 456799999999764432 699999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
||-. +..+|.. +.....+..+.++|||||+++
T Consensus 263 VSEl--------------------LGsfg~n---El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 263 VSEL--------------------LGSFGDN---ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EE-----------------------BTTBTT---TSHHHHHHHGGGGEEEEEEEE
T ss_pred EEec--------------------cCCcccc---ccCHHHHHHHHhhcCCCCEEe
Confidence 9921 1112211 234567888899999999876
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=86.32 Aligned_cols=149 Identities=13% Similarity=0.159 Sum_probs=110.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD 472 (570)
..+.+||||+||.|...+-.....+. ...|...|.|+..++..++-++.++ +..-++|.++|+++.. .......+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g--L~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG--LEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC--CccceEEEecCCCCHhHhhccCCCCC
Confidence 36789999999999998887776653 3689999999999999999998754 3334699999998752 22234578
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC----------------
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ---------------- 536 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------- 536 (570)
+++..--|-- | ..-+.+...+..+...+.|||++++..-+++
T Consensus 212 l~iVsGL~El-------------------F---~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g 269 (311)
T PF12147_consen 212 LAIVSGLYEL-------------------F---PDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDG 269 (311)
T ss_pred EEEEecchhh-------------------C---CcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCC
Confidence 7777433211 1 1124567788889999999999987542221
Q ss_pred ---------HHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 537 ---------SNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 537 ---------~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
..++.+++..+||..+..+-|-.|+=-|.+|+
T Consensus 270 ~~WvMRrRsq~EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 270 KAWVMRRRSQAEMDQLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred CceEEEecCHHHHHHHHHHcCCchhhheeccCCceEEEeec
Confidence 35678888899999998888999986666664
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-07 Score=83.47 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=61.0
Q ss_pred HHHHHHhhcC-CCCCEEEEECCcccH-HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 386 LVDLIVKKTF-EKKIKLLEMGTGSGA-IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 386 l~~~~~~~~~-~~~~~VLDlGcGtG~-i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
+.+++..... .++.+|+|+|||+|. ++..|++. +..|+|+|+++.+++.|+.+. ++++.+|++++
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~~----------~~~v~dDlf~p 70 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKLG----------LNAFVDDLFNP 70 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHhC----------CeEEECcCCCC
Confidence 3344444332 245789999999996 88888865 479999999999998887652 57999999986
Q ss_pred cccCCCceeEEEE-CCC
Q psy2395 464 LQNYKKLFNIIVA-NPP 479 (570)
Q Consensus 464 l~~~~~~fD~Iv~-NPP 479 (570)
....-..+|+|.+ +||
T Consensus 71 ~~~~y~~a~liysirpp 87 (134)
T PRK04148 71 NLEIYKNAKLIYSIRPP 87 (134)
T ss_pred CHHHHhcCCEEEEeCCC
Confidence 5544468999998 465
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4e-07 Score=87.07 Aligned_cols=190 Identities=16% Similarity=0.239 Sum_probs=115.8
Q ss_pred ccCee-eeecCCccccc-hhHHHHHHHHHhhcC-------CCCCEEEEECCcccHHHHHHH-HhcCCCcEEEEEeCCHHH
Q psy2395 365 FYGLV-LNITSDVLIPR-PETELLVDLIVKKTF-------EKKIKLLEMGTGSGAIAIAIA-IYSKNKIEIIATDISKFA 434 (570)
Q Consensus 365 f~~~~-~~v~~~~~~pr-~~t~~l~~~~~~~~~-------~~~~~VLDlGcGtG~i~l~la-~~~~~~~~V~gvDis~~a 434 (570)
||+.+ +.++++.+.|. |.....+..+.+.+. .+..++||||+|.-|+=-.+- +++ +++.+|.|||+.+
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eY--gwrfvGseid~~s 114 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEY--GWRFVGSEIDSQS 114 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceee--cceeecCccCHHH
Confidence 55655 77888999887 655555555554432 356789999999998855554 333 6899999999999
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEc-c---cccccccCCCceeEEEECCCCCCCCCcccCCCC-----c--cccccccc--
Q psy2395 435 LKIAKKNAKKKLTKYNIPIKFIKS-N---WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGD-----L--RFEPINAL-- 501 (570)
Q Consensus 435 l~~A~~n~~~~~~~~~~~v~~~~~-D---~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~-----~--~~ep~~al-- 501 (570)
++.|+.++..|-. +...+.+... | ++..+....+.||+++|||||+........... + .-.|...+
T Consensus 115 l~sA~~ii~~N~~-l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~da~~gsqrk~~nl~g~l~~~~~~~~ 193 (292)
T COG3129 115 LSSAKAIISANPG-LERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAADARAGSQRKRRNLGGELGPTNKLDA 193 (292)
T ss_pred HHHHHHHHHcCcc-hhhheeEEeccCccccccccccccceeeeEecCCCcchhHHHHHhcccCCcccccccccccccchh
Confidence 9999999987610 1223444432 2 334444445789999999999875332111000 0 00011111
Q ss_pred --cccC--------CChHHHHHHHHHHhhccccCeEEE-EEEcCCCHHHHHHHHHHCCCeeEEEEec
Q psy2395 502 --TDYS--------NGLSSIKEIVKNASKYLVKNGLLL-IEHGYNQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 502 --~~~~--------~gl~~~~~~l~~~~~~LkpgG~l~-~~~~~~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
+|+. ....++..++.++..+-+.-=||. ++.+..+.+.+.+.+...|-..+....-
T Consensus 194 lnfggq~qelwCegGe~afi~~mv~es~afakqv~WfttLisk~snlp~l~~~l~~~ga~~v~~~em 260 (292)
T COG3129 194 LNFGGQQQELWCEGGEVAFIKKMVEESRAFAKQVFWFTTLISKGSNLPPLYRALTDVGAVKVVKKEM 260 (292)
T ss_pred hhccCCceEEEecCcchhhHHHHHHHHHHHhhheehheeecCCcCCCHHHHHHHHHhcceeeeehhh
Confidence 1111 123567777777775555443432 2335567788888888888766654443
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.9e-07 Score=92.70 Aligned_cols=81 Identities=19% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++..|||||+|.|.++..|++.+ .+|+++|+|+.++...++... ...+++++.+|+++.....-..++.||
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~-----~~~n~~vi~~DaLk~d~~~l~~~~~vV 100 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA-----PYDNLTVINGDALKFDFPSLAQPYKVV 100 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc-----cccceEEEeCchhcCcchhhcCCCEEE
Confidence 457899999999999999999875 579999999999999988875 245799999999774321001689999
Q ss_pred ECCCCCCCC
Q psy2395 476 ANPPYIPKG 484 (570)
Q Consensus 476 ~NPPy~~~~ 484 (570)
+|.||.-+.
T Consensus 101 aNlPY~Iss 109 (259)
T COG0030 101 ANLPYNISS 109 (259)
T ss_pred EcCCCcccH
Confidence 999997543
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-07 Score=84.66 Aligned_cols=115 Identities=15% Similarity=0.093 Sum_probs=78.9
Q ss_pred EEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccC
Q psy2395 426 IATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYS 505 (570)
Q Consensus 426 ~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~ 505 (570)
+|+|+|+.|++.|+++..........+++|+++|+.+ ++..+++||+|+++--....
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~-lp~~~~~fD~v~~~~~l~~~---------------------- 57 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID-LPFDDCEFDAVTMGYGLRNV---------------------- 57 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh-CCCCCCCeeEEEecchhhcC----------------------
Confidence 4899999999999877653111112369999999955 55556789999995321110
Q ss_pred CChHHHHHHHHHHhhccccCeEEEEE-EcCC-----------------------------------------CHHHHHHH
Q psy2395 506 NGLSSIKEIVKNASKYLVKNGLLLIE-HGYN-----------------------------------------QSNLVRKL 543 (570)
Q Consensus 506 ~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~~-----------------------------------------~~~~l~~l 543 (570)
.....+++++.++|||||.+++. +... ..+++.++
T Consensus 58 ---~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~l 134 (160)
T PLN02232 58 ---VDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETL 134 (160)
T ss_pred ---CCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHH
Confidence 12368899999999999999753 2211 13567888
Q ss_pred HHHCCCeeEEEEecCCCCceEEE
Q psy2395 544 LFKYGFSDIKSWRDLSGIERVTQ 566 (570)
Q Consensus 544 l~~~Gf~~i~~~~D~~g~~R~~~ 566 (570)
|+++||+.+..+.-..|.-.+.+
T Consensus 135 l~~aGF~~~~~~~~~~g~~~~~~ 157 (160)
T PLN02232 135 ALEAGFSSACHYEISGGFMGNLV 157 (160)
T ss_pred HHHcCCCcceEEECcchHhHeeE
Confidence 99999999876665555544433
|
|
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.9e-07 Score=85.64 Aligned_cols=119 Identities=17% Similarity=0.286 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
|+--.++..+++.. .++++||+|.=||+-++.+|...|.+++|+++|+++.+.+++.+-.+..+ ....|+++++++
T Consensus 59 ~d~g~fl~~li~~~--~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~ag--v~~KI~~i~g~a 134 (237)
T KOG1663|consen 59 PDKGQFLQMLIRLL--NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAG--VDHKITFIEGPA 134 (237)
T ss_pred hHHHHHHHHHHHHh--CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcc--ccceeeeeecch
Confidence 33444555555543 56799999999999999999999989999999999999999988877643 344799999999
Q ss_pred ccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.+... .+.||++|.+- ..+.|...++++.++|++||.+++.
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDa----------------------------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDA----------------------------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEcc----------------------------chHHHHHHHHHHHhhcccccEEEEe
Confidence 7765421 36899999842 1234567888888899999999873
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.2e-07 Score=92.71 Aligned_cols=115 Identities=16% Similarity=0.247 Sum_probs=77.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc-------cCCCCEEEEEcccccc-----c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT-------KYNIPIKFIKSNWYNN-----L 464 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~-------~~~~~v~~~~~D~~~~-----l 464 (570)
++.+|||+|||-|....-+.... -..++|+||++.+++.|++....... .......|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~--i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAK--IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 67899999999999888777654 47999999999999999998832110 0123477899998753 1
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.....+||+|-|-...+- ++ ...+..+.++..+...|+|||+++..++.
T Consensus 140 ~~~~~~FDvVScQFalHY-----------------~F----ese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHY-----------------AF----ESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp SSTTS-EEEEEEES-GGG-----------------GG----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cccCCCcceeehHHHHHH-----------------hc----CCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 221258999998432210 11 12245688999999999999999987764
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-07 Score=93.98 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=62.1
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
+++.|||+|||||.+++..|+.+ ..+|+|||.|.-+ +.|++.+..|+ ....+++++|.+.+. ..+.++.|+|++
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S~ia-~~a~~iv~~N~--~~~ii~vi~gkvEdi-~LP~eKVDiIvS 133 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEASSIA-DFARKIVKDNG--LEDVITVIKGKVEDI-ELPVEKVDIIVS 133 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC--cceEEEEechHHH-HHHHHHHHhcC--ccceEEEeecceEEE-ecCccceeEEee
Confidence 57899999999999999999998 4799999998766 99999998864 444699999998664 222479999999
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-06 Score=86.76 Aligned_cols=113 Identities=18% Similarity=0.299 Sum_probs=88.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc-CCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+.+||-+|-|.|..+..+++..+ ..+++.|||++..++.|++.+...... .+.++.++.+|..+.+.....+||+|+
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 346999999999999999998865 579999999999999999988754211 246899999999988876556899999
Q ss_pred EC--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 AN--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+| .|-.+. .+| +-..|++.+.+.|+++|+++...+
T Consensus 155 ~D~tdp~gp~---------------~~L--------ft~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 155 VDSTDPVGPA---------------EAL--------FTEEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred EcCCCCCCcc---------------ccc--------CCHHHHHHHHHhcCCCcEEEEecC
Confidence 97 221111 122 226888999999999999988643
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.6e-06 Score=86.60 Aligned_cols=147 Identities=19% Similarity=0.283 Sum_probs=98.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc-CCCCEEEEEcccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK-YNIPIKFIKSNWY 461 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~-~~~~v~~~~~D~~ 461 (570)
.+.|+...+.. .+++.+||=||-|.|..+..+.+..+ ..+|+.||+++..++.|++.+...... .+.+++++.+|..
T Consensus 63 ~e~l~h~~~~~-~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~ 140 (246)
T PF01564_consen 63 HEMLVHPPLLL-HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR 140 (246)
T ss_dssp HHHHHHHHHHH-SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred HHHHhhhHhhc-CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence 34454444332 24678999999999999999986643 479999999999999999987653211 3457999999998
Q ss_pred cccccCCC-ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--cCCCHH
Q psy2395 462 NNLQNYKK-LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GYNQSN 538 (570)
Q Consensus 462 ~~l~~~~~-~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~ 538 (570)
..+....+ +||+|+.+.+- +.. |...+ +-..+++.+.+.|+|+|.+++-. +..+..
T Consensus 141 ~~l~~~~~~~yDvIi~D~~d-p~~------------~~~~l--------~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~ 199 (246)
T PF01564_consen 141 KFLKETQEEKYDVIIVDLTD-PDG------------PAPNL--------FTREFYQLCKRRLKPDGVLVLQAGSPFLHPE 199 (246)
T ss_dssp HHHHTSSST-EEEEEEESSS-TTS------------CGGGG--------SSHHHHHHHHHHEEEEEEEEEEEEETTTTHH
T ss_pred HHHHhccCCcccEEEEeCCC-CCC------------Ccccc--------cCHHHHHHHHhhcCCCcEEEEEccCcccchH
Confidence 87766556 89999997642 111 00011 22688899999999999998854 344444
Q ss_pred HH---HHHHHHCCCeeEE
Q psy2395 539 LV---RKLLFKYGFSDIK 553 (570)
Q Consensus 539 ~l---~~ll~~~Gf~~i~ 553 (570)
.+ .+.+++. |..+.
T Consensus 200 ~~~~i~~tl~~~-F~~v~ 216 (246)
T PF01564_consen 200 LFKSILKTLRSV-FPQVK 216 (246)
T ss_dssp HHHHHHHHHHTT-SSEEE
T ss_pred HHHHHHHHHHHh-CCceE
Confidence 43 3444444 44443
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.5e-07 Score=83.62 Aligned_cols=108 Identities=19% Similarity=0.253 Sum_probs=78.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcc------cC-CCCEEEEEccccccccc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLT------KY-NIPIKFIKSNWYNNLQN 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~------~~-~~~v~~~~~D~~~~l~~ 466 (570)
..++.++||+|+|||+++..+++.. ..+..++|||.-++.++.+++|+..... .. ..++.++.||.....+.
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 3578999999999999999998654 3344459999999999999999986420 01 12588999999776554
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
..+||.|.+-. ...++.+...+.|++||.+++-.+.
T Consensus 160 -~a~YDaIhvGA-------------------------------aa~~~pq~l~dqL~~gGrllip~~~ 195 (237)
T KOG1661|consen 160 -QAPYDAIHVGA-------------------------------AASELPQELLDQLKPGGRLLIPVGQ 195 (237)
T ss_pred -cCCcceEEEcc-------------------------------CccccHHHHHHhhccCCeEEEeecc
Confidence 46899999821 0123344455589999999886654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=81.29 Aligned_cols=144 Identities=15% Similarity=0.120 Sum_probs=98.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-ccc------CCC
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN-LQN------YKK 469 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~-l~~------~~~ 469 (570)
.+.+|||||||||.-+..+|..+| ..+-.-.|.++..+.-.+..+...+..+ . ..-+.-|+... .+. ...
T Consensus 25 ~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~N-v-~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 25 SGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPN-V-RPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred cCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcc-c-CCCeEeecCCCCCccccccccCCC
Confidence 333699999999999999999997 5888899999999877666665432211 1 12233444332 111 235
Q ss_pred ceeEEEE-CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-------------
Q psy2395 470 LFNIIVA-NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------------- 535 (570)
Q Consensus 470 ~fD~Iv~-NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------------- 535 (570)
+||+|++ |.-.+ ........+++.+.+.|++||.|++.-|+.
T Consensus 102 ~~D~i~~~N~lHI------------------------~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~F 157 (204)
T PF06080_consen 102 SFDAIFCINMLHI------------------------SPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAF 157 (204)
T ss_pred CcceeeehhHHHh------------------------cCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHH
Confidence 8999998 22111 123456889999999999999988743331
Q ss_pred --------------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 536 --------------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 536 --------------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
..+.+.++..++|+...+.+ ++....++++-+
T Consensus 158 D~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~-~MPANN~~Lvfr 203 (204)
T PF06080_consen 158 DASLRSRDPEWGIRDIEDVEALAAAHGLELEEDI-DMPANNLLLVFR 203 (204)
T ss_pred HHHHhcCCCCcCccCHHHHHHHHHHCCCccCccc-ccCCCCeEEEEe
Confidence 14678888899999865444 677777877755
|
The function of this family is unknown. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.1e-05 Score=78.82 Aligned_cols=131 Identities=18% Similarity=0.342 Sum_probs=82.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv 475 (570)
.+.+||=+|=+- .+++++|..+. ..+|+-+||++..++..++.+... +.+++.+..|+..++|. ..++||+++
T Consensus 44 ~gk~il~lGDDD-LtSlA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~----gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDD-LTSLALALTGL-PKRITVVDIDERLLDFINRVAEEE----GLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT--HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHH----T--EEEE---TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCc-HHHHHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHc----CCceEEEEecccccCCHHHhcCCCEEE
Confidence 577899888432 45666665554 479999999999999999999874 55699999999998874 248999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCe-EEEEEEcCCC--H---HHHHHHHHHCCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG-LLLIEHGYNQ--S---NLVRKLLFKYGF 549 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG-~l~~~~~~~~--~---~~l~~ll~~~Gf 549 (570)
+||||-. +-+.-|+......||..| ..++.++... . ..+++.+.+.||
T Consensus 118 TDPPyT~--------------------------~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl 171 (243)
T PF01861_consen 118 TDPPYTP--------------------------EGLKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGL 171 (243)
T ss_dssp E---SSH--------------------------HHHHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--
T ss_pred eCCCCCH--------------------------HHHHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCc
Confidence 9999963 345778888888998766 6677776544 2 367888889999
Q ss_pred eeEEEEecCC
Q psy2395 550 SDIKSWRDLS 559 (570)
Q Consensus 550 ~~i~~~~D~~ 559 (570)
.+..++++++
T Consensus 172 ~i~dii~~Fn 181 (243)
T PF01861_consen 172 VITDIIPDFN 181 (243)
T ss_dssp EEEEEEEEEE
T ss_pred CHHHHHhhhc
Confidence 9888877653
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2912|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=5.7e-06 Score=82.66 Aligned_cols=200 Identities=20% Similarity=0.214 Sum_probs=124.1
Q ss_pred CeeeeecCCccccc-hhHHHHHHHHHhhcC---CCCCE---EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR-PETELLVDLIVKKTF---EKKIK---LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 367 ~~~~~v~~~~~~pr-~~t~~l~~~~~~~~~---~~~~~---VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
++...++++.++|+ |..-..+.++-+.+. ....+ =+|||+|+-++--.+..... ++...|+|++...+..|+
T Consensus 65 gl~veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~ 143 (419)
T KOG2912|consen 65 GLSVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAK 143 (419)
T ss_pred CceEecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhc-cceeeeeeccccccchhh
Confidence 56677789999999 555555555554432 12222 48999999888655543322 588999999999999999
Q ss_pred HHHHhhcccCCCCEEEEEcccccc-----ccc-CCCceeEEEECCCCCCCCCcccCCCC---ccccccccccccCC----
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNN-----LQN-YKKLFNIIVANPPYIPKGDIHLNKGD---LRFEPINALTDYSN---- 506 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~-----l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~---~~~ep~~al~~~~~---- 506 (570)
.|...|+ +...+.+++....+. ... .+.-||++.|||||+......-..+. .+--|+.+.+|+..
T Consensus 144 snV~qn~--lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~e~v~ 221 (419)
T KOG2912|consen 144 SNVEQNN--LSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQEFVS 221 (419)
T ss_pred ccccccc--cccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchhHHHh
Confidence 9999864 333455554422111 111 12459999999999976332211111 12345555555432
Q ss_pred ---ChHHHHHHHHHHhhccccCeEEE-EEEcC-CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 507 ---GLSSIKEIVKNASKYLVKNGLLL-IEHGY-NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 507 ---gl~~~~~~l~~~~~~LkpgG~l~-~~~~~-~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
..++..+++..... |+.+=..+ ..+|- .....+..-|.+.|-..+.+..--.|...-+..-||
T Consensus 222 eggev~fvnRiitds~~-lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~kv~itel~qGkTkRW~LaWS 289 (419)
T KOG2912|consen 222 EGGEVSFVNRIITDSFV-LRKRIRWYTCMLGKKSSLKPLISKLREQGVTKVKITELVQGKTKRWGLAWS 289 (419)
T ss_pred hccHHHHHHHHHHHHHH-hhhcceEEeeecccccccHHHHHHHHHcCCceEEEEEeeccccceeeEEee
Confidence 23455566655442 23332222 23332 456778888999998888888888888876666665
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=98.42 E-value=4e-06 Score=79.74 Aligned_cols=136 Identities=13% Similarity=0.187 Sum_probs=79.3
Q ss_pred cchhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHhh-----------
Q psy2395 379 PRPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFALKIAKKNAKKK----------- 445 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~----------- 445 (570)
|..-+..+.+..+..+. ..+.+++|.|||+|++...+....+ .-..|+|.|||++++++|++|+...
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~e 111 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREE 111 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHH
Confidence 44444555566655543 4567999999999999877765432 1257999999999999999997521
Q ss_pred ----------------------------cccCCCCEEEEEcccccccc----cCCCceeEEEECCCCCCCCCcccCCCCc
Q psy2395 446 ----------------------------LTKYNIPIKFIKSNWYNNLQ----NYKKLFNIIVANPPYIPKGDIHLNKGDL 493 (570)
Q Consensus 446 ----------------------------~~~~~~~v~~~~~D~~~~l~----~~~~~fD~Iv~NPPy~~~~~~~~~~~~~ 493 (570)
..+......+.+.|++++.. ......|+|+++.||....+|.
T Consensus 112 L~~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~------ 185 (246)
T PF11599_consen 112 LRELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQ------ 185 (246)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTT------
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccccc------
Confidence 00011246788999987432 1123479999999998765441
Q ss_pred cccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 494 RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 494 ~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
++.+-+-...++..+...|-+++++.+
T Consensus 186 ----------g~~~~~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 186 ----------GEGSGGPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp ----------S---HHHHHHHHHHHHCCS-TT-EEEE
T ss_pred ----------CCCCCCcHHHHHHHHHhhCCCCcEEEE
Confidence 112334568999999999954555554
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.5e-06 Score=80.25 Aligned_cols=119 Identities=18% Similarity=0.315 Sum_probs=87.6
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+++|+|+|.|.-++.+|-..| ..+++.+|.+..-+...+.-+...++ .+++++++.+.+ .....+||+|++-
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L---~nv~v~~~R~E~--~~~~~~fd~v~aR- 122 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGL---SNVEVINGRAEE--PEYRESFDVVTAR- 122 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT----SSEEEEES-HHH--TTTTT-EEEEEEE-
T ss_pred ceEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCC---CCEEEEEeeecc--cccCCCccEEEee-
Confidence 3899999999999999998886 68999999999998888887776432 259999999966 2334789999991
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHH---HHHCCCeeE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKL---LFKYGFSDI 552 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~l---l~~~Gf~~i 552 (570)
|+ ..+..+++.+..+|++||.+++.-|....+++.+. +...|....
T Consensus 123 ---------------------Av-------~~l~~l~~~~~~~l~~~G~~l~~KG~~~~~El~~~~~~~~~~~~~~~ 171 (184)
T PF02527_consen 123 ---------------------AV-------APLDKLLELARPLLKPGGRLLAYKGPDAEEELEEAKKAWKKLGLKVL 171 (184)
T ss_dssp ---------------------SS-------SSHHHHHHHHGGGEEEEEEEEEEESS--HHHHHTHHHHHHCCCEEEE
T ss_pred ---------------------hh-------cCHHHHHHHHHHhcCCCCEEEEEcCCChHHHHHHHHhHHHHhCCEEe
Confidence 11 23468888999999999999998887766655443 444555543
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.9e-07 Score=92.81 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=89.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHH-------HHHHHHHhhcccCCCCEEEEEcccccccccC
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK-------IAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY 467 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~-------~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~ 467 (570)
..+++.|.|...|||.+.++.|+.+ +.|+|.||+-.++. ..+.|+++.+. ...-+.++.+|...+....
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~-~~~fldvl~~D~sn~~~rs 281 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGS-SSQFLDVLTADFSNPPLRS 281 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCC-cchhhheeeecccCcchhh
Confidence 4688999999999999999999764 78999999999887 23456655421 1113778899987654433
Q ss_pred CCceeEEEECCCCCCCCCcccC--CCCcc---------ccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLN--KGDLR---------FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~--~~~~~---------~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
...||.|||+|||.-....... ...++ |=|... ...-.+.+..++.-+.+.|..||++++-.+
T Consensus 282 n~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~---~ysl~~~v~dll~fss~~L~~ggrlv~w~p 355 (421)
T KOG2671|consen 282 NLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTE---QYSLSSLVYDLLCFSSRRLVDGGRLVFWLP 355 (421)
T ss_pred cceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccc---hhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence 5789999999999865432211 00011 111110 001125567899999999999999987554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-06 Score=83.50 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=74.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|+|+|+|+|.++..+++.+| +.+++..|. |..++.+++ ..+++++.+|+++.++ . +|+++
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f~~~P---~-~D~~~ 163 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFFDPLP---V-ADVYL 163 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH---------TTTEEEEES-TTTCCS---S-ESEEE
T ss_pred cCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc---------ccccccccccHHhhhc---c-cccee
Confidence 3556899999999999999999997 689999999 999998887 2369999999986544 3 99999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC--eEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN--GLLLI 530 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg--G~l~~ 530 (570)
..--.+ .-+-+....++++++..|+|| |.+++
T Consensus 164 l~~vLh-----------------------~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 164 LRHVLH-----------------------DWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp EESSGG-----------------------GS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred eehhhh-----------------------hcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 831111 111245578999999999999 99877
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.7e-06 Score=84.95 Aligned_cols=82 Identities=17% Similarity=0.281 Sum_probs=66.8
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..+++..||++|-|||+++..|...+ .+|+|+|+||.|+....+..+- .......+++.||++.... ..||.
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~g--tp~~~kLqV~~gD~lK~d~---P~fd~ 126 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQG--TPKSGKLQVLHGDFLKTDL---PRFDG 126 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcC--CCccceeeEEecccccCCC---cccce
Confidence 34678899999999999999999765 6999999999999998888762 2233569999999977432 46999
Q ss_pred EEECCCCCCC
Q psy2395 474 IVANPPYIPK 483 (570)
Q Consensus 474 Iv~NPPy~~~ 483 (570)
+|+|.||--+
T Consensus 127 cVsNlPyqIS 136 (315)
T KOG0820|consen 127 CVSNLPYQIS 136 (315)
T ss_pred eeccCCcccc
Confidence 9999998544
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.1e-06 Score=89.65 Aligned_cols=79 Identities=19% Similarity=0.070 Sum_probs=64.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC---Ccee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK---KLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~---~~fD 472 (570)
.++..++|.+||.|..+..+++.+++.++|+|+|.|+.|++.|++++.. ..+++++++|+.+...... .++|
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~~l~~~~~~vD 92 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKEVLAEGLGKVD 92 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHHHHHcCCCccC
Confidence 4677999999999999999999876568999999999999999988752 3469999999976432222 2799
Q ss_pred EEEECCC
Q psy2395 473 IIVANPP 479 (570)
Q Consensus 473 ~Iv~NPP 479 (570)
.|++|.-
T Consensus 93 gIl~DLG 99 (296)
T PRK00050 93 GILLDLG 99 (296)
T ss_pred EEEECCC
Confidence 9999754
|
|
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.9e-07 Score=86.63 Aligned_cols=99 Identities=20% Similarity=0.266 Sum_probs=78.7
Q ss_pred cccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 377 LIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 377 ~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
.+|.++.+.+...+.... ....|+|..||.|.-++..|..+ ..|++||+||.-+..|+.|++-.|. ..+|+|+
T Consensus 76 vTpe~ia~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI--~~rItFI 148 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGV--PDRITFI 148 (263)
T ss_pred eccHHHHHHHHHHHHHhc--CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecC--CceeEEE
Confidence 357777777777766543 45689999999999999999776 4799999999999999999997653 3389999
Q ss_pred Eccccccccc---CCCceeEEEECCCCCC
Q psy2395 457 KSNWYNNLQN---YKKLFNIIVANPPYIP 482 (570)
Q Consensus 457 ~~D~~~~l~~---~~~~fD~Iv~NPPy~~ 482 (570)
+||+++.... ....+|+|+..||+.-
T Consensus 149 ~GD~ld~~~~lq~~K~~~~~vf~sppwgg 177 (263)
T KOG2730|consen 149 CGDFLDLASKLKADKIKYDCVFLSPPWGG 177 (263)
T ss_pred echHHHHHHHHhhhhheeeeeecCCCCCC
Confidence 9999774332 2246889999999864
|
|
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=86.18 Aligned_cols=127 Identities=20% Similarity=0.270 Sum_probs=88.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---cCCCCEEEEEcccccc-----ccc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNIPIKFIKSNWYNN-----LQN 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---~~~~~v~~~~~D~~~~-----l~~ 466 (570)
.+++..++|+|||-|.-++-.-+.+ -..++|+||..-.++.|++..+.... .+...+.|+.+|.+.. ++.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 3567789999999999998887665 36899999999999999987664311 1223588999998653 222
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK 546 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~ 546 (570)
.+.+||+|-|-..++- ++ ...+..+.++.++.++|+|||+++-.+|. ...+..-++.
T Consensus 193 ~dp~fDivScQF~~HY-----------------aF----etee~ar~~l~Nva~~LkpGG~FIgTiPd--sd~Ii~rlr~ 249 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHY-----------------AF----ETEESARIALRNVAKCLKPGGVFIGTIPD--SDVIIKRLRA 249 (389)
T ss_pred CCCCcceeeeeeeEee-----------------ee----ccHHHHHHHHHHHHhhcCCCcEEEEecCc--HHHHHHHHHh
Confidence 2344999988543321 11 11234578999999999999999877664 3444444443
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-06 Score=80.58 Aligned_cols=124 Identities=20% Similarity=0.298 Sum_probs=75.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..+++++.. .++...|.|+|||.+.++..+. ...+|+..|+-.. +-.+..+|+ ..
T Consensus 61 d~iI~~l~~--~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva~------------------n~~Vtacdi-a~ 115 (219)
T PF05148_consen 61 DVIIEWLKK--RPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVAP------------------NPRVTACDI-AN 115 (219)
T ss_dssp HHHHHHHCT--S-TTS-EEEES-TT-HHHHH------S---EEEEESS-S------------------STTEEES-T-TS
T ss_pred HHHHHHHHh--cCCCEEEEECCCchHHHHHhcc----cCceEEEeeccCC------------------CCCEEEecC-cc
Confidence 455566543 2345799999999999986653 2468999998432 123677898 44
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EE--cCCCHHHH
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EH--GYNQSNLV 540 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~--~~~~~~~l 540 (570)
+|..++++|++|+... |-|. .+..++.++.|+|||||.+++ |+ .......+
T Consensus 116 vPL~~~svDv~VfcLS---------------------LMGT-----n~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F 169 (219)
T PF05148_consen 116 VPLEDESVDVAVFCLS---------------------LMGT-----NWPDFIREANRVLKPGGILKIAEVKSRFENVKQF 169 (219)
T ss_dssp -S--TT-EEEEEEES------------------------SS------HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHH
T ss_pred CcCCCCceeEEEEEhh---------------------hhCC-----CcHHHHHHHHheeccCcEEEEEEecccCcCHHHH
Confidence 5655689999998543 2222 467899999999999999987 55 34677888
Q ss_pred HHHHHHCCCeeEEEEecCCC
Q psy2395 541 RKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 541 ~~ll~~~Gf~~i~~~~D~~g 560 (570)
.+.+...||.... +|..+
T Consensus 170 ~~~~~~~GF~~~~--~d~~n 187 (219)
T PF05148_consen 170 IKALKKLGFKLKS--KDESN 187 (219)
T ss_dssp HHHHHCTTEEEEE--EE--S
T ss_pred HHHHHHCCCeEEe--cccCC
Confidence 8999999998764 45443
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.4e-06 Score=85.83 Aligned_cols=112 Identities=17% Similarity=0.238 Sum_probs=76.1
Q ss_pred CCCEEEEECCcccHHHHH----HHHhcC---CCcEEEEEeCCHHHHHHHHHHHHh--------------hcc-----c--
Q psy2395 397 KKIKLLEMGTGSGAIAIA----IAIYSK---NKIEIIATDISKFALKIAKKNAKK--------------KLT-----K-- 448 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~----la~~~~---~~~~V~gvDis~~al~~A~~n~~~--------------~~~-----~-- 448 (570)
...+||..||+||-=+.. +....+ ...+|+|+|||+.+++.|++.... ... .
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 347999999999964433 333221 146899999999999999976311 000 0
Q ss_pred -------CCCCEEEEEcccccccccCCCceeEEEEC--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 449 -------YNIPIKFIKSNWYNNLQNYKKLFNIIVAN--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 449 -------~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
....|+|.+.|+.+......+.||+|+|. ..|+.. +....+++.+.
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~-------------------------~~~~~vl~~l~ 249 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDK-------------------------TTQERILRRFV 249 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCH-------------------------HHHHHHHHHHH
Confidence 11248899999977322224789999993 223211 24578999999
Q ss_pred hccccCeEEEEEEc
Q psy2395 520 KYLVKNGLLLIEHG 533 (570)
Q Consensus 520 ~~LkpgG~l~~~~~ 533 (570)
+.|+|||+|++...
T Consensus 250 ~~L~pgG~L~lG~s 263 (287)
T PRK10611 250 PLLKPDGLLFAGHS 263 (287)
T ss_pred HHhCCCcEEEEeCc
Confidence 99999999887654
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.6e-06 Score=85.55 Aligned_cols=114 Identities=19% Similarity=0.319 Sum_probs=78.3
Q ss_pred CCCEEEEECCcccH----HHHHHHHhcC----CCcEEEEEeCCHHHHHHHHHHHHh---------------hcc--cCC-
Q psy2395 397 KKIKLLEMGTGSGA----IAIAIAIYSK----NKIEIIATDISKFALKIAKKNAKK---------------KLT--KYN- 450 (570)
Q Consensus 397 ~~~~VLDlGcGtG~----i~l~la~~~~----~~~~V~gvDis~~al~~A~~n~~~---------------~~~--~~~- 450 (570)
...+||-+||+||- +++.+...++ ...+|+|+|||..+++.|+.-... ... ..+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36799999999994 5555555553 258999999999999999853211 000 001
Q ss_pred --------CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 451 --------IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 451 --------~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
..|.|...|+++..+ ..+.||+|+| .+++-| +. -..-.+++...+..|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~-~~~~fD~IfC-------------RNVLIY------Fd----~~~q~~il~~f~~~L 231 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP-FLGKFDLIFC-------------RNVLIY------FD----EETQERILRRFADSL 231 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc-ccCCCCEEEE-------------cceEEe------eC----HHHHHHHHHHHHHHh
Confidence 237888888877554 3578999999 222211 00 124478999999999
Q ss_pred ccCeEEEEEEcC
Q psy2395 523 VKNGLLLIEHGY 534 (570)
Q Consensus 523 kpgG~l~~~~~~ 534 (570)
+|||+|++....
T Consensus 232 ~~gG~LflG~sE 243 (268)
T COG1352 232 KPGGLLFLGHSE 243 (268)
T ss_pred CCCCEEEEccCc
Confidence 999999985543
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=83.96 Aligned_cols=82 Identities=10% Similarity=0.147 Sum_probs=67.3
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc----cC--CCCEEEEEcccccccccCCCceeE
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT----KY--NIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~----~~--~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
+|||+.+|+|..++.++..+ ++|+++|-||.+....+.|+..... .. ..+++++++|..+.+......||+
T Consensus 91 ~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV 167 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_pred EEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence 89999999999999999764 6799999999999999999886310 01 136899999998877654468999
Q ss_pred EEECCCCCCCC
Q psy2395 474 IVANPPYIPKG 484 (570)
Q Consensus 474 Iv~NPPy~~~~ 484 (570)
|+.+|||-...
T Consensus 168 VYlDPMfp~~~ 178 (250)
T PRK10742 168 VYLDPMFPHKQ 178 (250)
T ss_pred EEECCCCCCCc
Confidence 99999997643
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-06 Score=85.20 Aligned_cols=98 Identities=29% Similarity=0.323 Sum_probs=67.8
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
..++|+|||+|.-++.+|..+ .+|+|+|+|+.||+.|++...... ......+...+..+.+ ..+++.|+|++--
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y--~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aq 108 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTY--CHTPSTMSSDEMVDLL-GGEESVDLITAAQ 108 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCccc--ccCCcccccccccccc-CCCcceeeehhhh
Confidence 389999999998888888765 479999999999999987654210 1112344444443322 2257999999832
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l 528 (570)
.++ +-...++++.++++||+.|-+
T Consensus 109 a~H--------------------------WFdle~fy~~~~rvLRk~Gg~ 132 (261)
T KOG3010|consen 109 AVH--------------------------WFDLERFYKEAYRVLRKDGGL 132 (261)
T ss_pred hHH--------------------------hhchHHHHHHHHHHcCCCCCE
Confidence 221 113478999999999988733
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.4e-06 Score=81.18 Aligned_cols=125 Identities=20% Similarity=0.312 Sum_probs=71.5
Q ss_pred HHHHHHHHhh-c----CCCCCEEEEECCcccHHHHHH----HHhc----CCCcEEEEEeCCHHHHHHHHHHHH-------
Q psy2395 384 ELLVDLIVKK-T----FEKKIKLLEMGTGSGAIAIAI----AIYS----KNKIEIIATDISKFALKIAKKNAK------- 443 (570)
Q Consensus 384 ~~l~~~~~~~-~----~~~~~~VLDlGcGtG~i~l~l----a~~~----~~~~~V~gvDis~~al~~A~~n~~------- 443 (570)
+.+.+.++.. + ..++.+||..||+||-=+..+ .... +...+|+|+|||+.+++.|++-.-
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~ 92 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG 92 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence 4555555532 1 125679999999999654333 3311 114799999999999999985321
Q ss_pred -------hhc-ccC----------CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCcc-cccccccccc
Q psy2395 444 -------KKL-TKY----------NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR-FEPINALTDY 504 (570)
Q Consensus 444 -------~~~-~~~----------~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~-~ep~~al~~~ 504 (570)
+.. ... ...|.|.+.|+.+ .....+.||+|+|. +++- |.+
T Consensus 93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~-~~~~~~~fD~I~CR-------------NVlIYF~~------- 151 (196)
T PF01739_consen 93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD-PDPPFGRFDLIFCR-------------NVLIYFDP------- 151 (196)
T ss_dssp S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT--S------EEEEEE--------------SSGGGS-H-------
T ss_pred hHHHHHHHhccccCCCceeEChHHcCceEEEecccCC-CCcccCCccEEEec-------------CEEEEeCH-------
Confidence 111 000 1258999999988 22234789999992 2221 111
Q ss_pred CCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 505 SNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 505 ~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+....+++.+.+.|+|||+|++...
T Consensus 152 ----~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 152 ----ETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp ----HHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred ----HHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3457899999999999999998543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.8e-06 Score=84.35 Aligned_cols=121 Identities=19% Similarity=0.280 Sum_probs=83.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+..|||+|||+|.++...|..+ ..+|++||.| +|.+.|++.+..| ....++.++.|-+.+. . .+++.|+||+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEAS-~MAqyA~~Lv~~N--~~~~rItVI~GKiEdi-e-LPEk~DviIS 249 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEAS-EMAQYARKLVASN--NLADRITVIPGKIEDI-E-LPEKVDVIIS 249 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhC--cceEEEEehh-HHHHHHHHHHhcC--CccceEEEccCccccc-c-CchhccEEEe
Confidence 46789999999999999999887 4799999986 6789999988765 2456899999998653 2 2378999999
Q ss_pred CCC-CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc------CCCHHHHHHHHHHCC
Q psy2395 477 NPP-YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG------YNQSNLVRKLLFKYG 548 (570)
Q Consensus 477 NPP-y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~------~~~~~~l~~ll~~~G 548 (570)
.|- |.-.. +. .++. .-.+.++|+|+|.++=.+| +.......+.+.++.
T Consensus 250 EPMG~mL~N--------------------ER---MLEs-Yl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nkAn 304 (517)
T KOG1500|consen 250 EPMGYMLVN--------------------ER---MLES-YLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNKAN 304 (517)
T ss_pred ccchhhhhh--------------------HH---HHHH-HHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhhhh
Confidence 763 21100 00 1122 2235689999999875443 333444455555444
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.9e-06 Score=89.69 Aligned_cols=135 Identities=20% Similarity=0.109 Sum_probs=93.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv 475 (570)
.+..+||||||.|.+.+.+|...| ...++|+|++...+..|.+.+...+ -.++.++++|+..... .+++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~---l~N~~~~~~~~~~~~~~~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQN---ITNFLLFPNNLDLILNDLPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcC---CCeEEEEcCCHHHHHHhcCcccccEEE
Confidence 456899999999999999999987 6899999999999988887776532 2358888888732221 2237899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-HHHHHHHHHHCC-CeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-SNLVRKLLFKYG-FSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~l~~ll~~~G-f~~i 552 (570)
.|-| .+++. .+|.-+ .+ ....+++...+.|+|||.+.+.+.... .......+.+.+ |..+
T Consensus 423 i~FP---DPWpK-----krh~kr-Rl--------~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~~~ 484 (506)
T PRK01544 423 ILFP---DPWIK-----NKQKKK-RI--------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFEII 484 (506)
T ss_pred EECC---CCCCC-----CCCccc-cc--------cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeEec
Confidence 9854 22111 011100 11 226788899999999999998765433 444566666665 6654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.1e-05 Score=78.91 Aligned_cols=154 Identities=12% Similarity=0.034 Sum_probs=98.9
Q ss_pred ccccCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy2395 363 KEFYGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438 (570)
Q Consensus 363 ~~f~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A 438 (570)
...+|.-+.++ ++.....+ .|.|+.-.+-. -+.+.+||=+|.|-|..+..+++. + .+|+.||||+..++.+
T Consensus 36 s~~fGr~LvLD-~~~~te~dEfiYHEmLvHppl~~-h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~ 110 (262)
T PRK00536 36 SKDFGEIAMLN-KQLLFKNFLHIESELLAHMGGCT-KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSF 110 (262)
T ss_pred ccccccEEEEe-eeeeecchhhhHHHHHHHHHHhh-CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHH
Confidence 34557777777 55532221 23333333321 256789999999999999999976 3 3999999999999999
Q ss_pred HHHHHhhccc-CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 439 KKNAKKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 439 ~~n~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
++.+...... .+.+++++.. + .....++||+||.+..|- ..+++.
T Consensus 111 k~~lP~~~~~~~DpRv~l~~~-~---~~~~~~~fDVIIvDs~~~------------------------------~~fy~~ 156 (262)
T PRK00536 111 ISFFPHFHEVKNNKNFTHAKQ-L---LDLDIKKYDLIICLQEPD------------------------------IHKIDG 156 (262)
T ss_pred HHHCHHHHHhhcCCCEEEeeh-h---hhccCCcCCEEEEcCCCC------------------------------hHHHHH
Confidence 9965543211 3446777752 2 111126899999974321 355677
Q ss_pred HhhccccCeEEEEEE--cCCCHHHHHHHHHH--CCCeeEEEE
Q psy2395 518 ASKYLVKNGLLLIEH--GYNQSNLVRKLLFK--YGFSDIKSW 555 (570)
Q Consensus 518 ~~~~LkpgG~l~~~~--~~~~~~~l~~ll~~--~Gf~~i~~~ 555 (570)
+.+.|+|||.++... +..+.+.+..+.+. ..|..+..+
T Consensus 157 ~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v~~y 198 (262)
T PRK00536 157 LKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFSIAMPF 198 (262)
T ss_pred HHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCCceEEE
Confidence 888999999999844 33444444444332 268766544
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2e-05 Score=76.51 Aligned_cols=122 Identities=16% Similarity=0.236 Sum_probs=92.7
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC-CEEEEEcccccccccCCCc-eeEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQNYKKL-FNIIV 475 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~~~~~-fD~Iv 475 (570)
+.+++|||+|.|.-++.+|-..| ..+|+-+|....-+...+.-.... +. +++++++.+.+.... .. ||+|.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL----~L~nv~i~~~RaE~~~~~--~~~~D~vt 140 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKEL----GLENVEIVHGRAEEFGQE--KKQYDVVT 140 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHh----CCCCeEEehhhHhhcccc--cccCcEEE
Confidence 58999999999999999997776 578999999999888888877763 44 499999999664432 23 99999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE---EcCCCHHHHHHHHHHCCCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE---HGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~---~~~~~~~~l~~ll~~~Gf~~i 552 (570)
+- | +..+..+++-+..++++||.+++. -+.+...+....+...|+...
T Consensus 141 sR----------------------A-------va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~ 191 (215)
T COG0357 141 SR----------------------A-------VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVE 191 (215)
T ss_pred ee----------------------h-------ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEE
Confidence 91 1 224567888888999999987543 344556667777777787776
Q ss_pred EEE
Q psy2395 553 KSW 555 (570)
Q Consensus 553 ~~~ 555 (570)
.+.
T Consensus 192 ~~~ 194 (215)
T COG0357 192 KVF 194 (215)
T ss_pred EEE
Confidence 544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=79.72 Aligned_cols=39 Identities=18% Similarity=0.236 Sum_probs=34.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKI 437 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~ 437 (570)
++.+|||+|||||.++..+++.+ ..+|+|+|+++.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~g--a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKG--AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcC--CCEEEEEeCCHHHHHH
Confidence 56799999999999999999875 4689999999988865
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.6e-06 Score=78.27 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------ccC
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---------QNY 467 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---------~~~ 467 (570)
++.+|||+||++|.++..+++......+|+|+|+.+. . ....+.++++|+.+.. ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~-----~~~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------D-----PLQNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------G-----S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------c-----cccceeeeecccchhhHHHhhhhhcccc
Confidence 4589999999999999999987633589999999887 1 1123666677765421 111
Q ss_pred CCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHH
Q psy2395 468 KKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLF 545 (570)
Q Consensus 468 ~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~ 545 (570)
..+||+|++|- |..... ... + ...........+..+..+|+|||.+++-+ .......+...++
T Consensus 89 ~~~~dlv~~D~~~~~~g~-~~~-------d-------~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~ 153 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGD-RNI-------D-------EFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLK 153 (181)
T ss_dssp TCSESEEEE-------SS-HHS-------S-------HHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHH
T ss_pred ccCcceeccccccCCCCc-hhh-------H-------HHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHH
Confidence 25899999984 221111 000 0 00112344555666778899999888744 3222246777666
Q ss_pred HCCCeeEEEEecCC----CCceEEEEE
Q psy2395 546 KYGFSDIKSWRDLS----GIERVTQGK 568 (570)
Q Consensus 546 ~~Gf~~i~~~~D~~----g~~R~~~~~ 568 (570)
. .|..+.+++... +.+++++++
T Consensus 154 ~-~F~~v~~~Kp~~sr~~s~E~Ylv~~ 179 (181)
T PF01728_consen 154 R-CFSKVKIVKPPSSRSESSEEYLVCR 179 (181)
T ss_dssp H-HHHHEEEEE-TTSBTTCBEEEEESE
T ss_pred h-CCeEEEEEECcCCCCCccEEEEEEc
Confidence 5 688888887553 555666653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=73.27 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=80.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc----ccCCCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL----QNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l----~~~~~~f 471 (570)
..+.-||++|.|||.++-++..++-....++++|.|++.+....+... .+.++.||+++.. ......|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p--------~~~ii~gda~~l~~~l~e~~gq~~ 118 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP--------GVNIINGDAFDLRTTLGEHKGQFF 118 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC--------CccccccchhhHHHHHhhcCCCee
Confidence 567799999999999999998877556789999999999988776543 2669999987633 1223579
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEc
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHG 533 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~ 533 (570)
|.|||--|+...+ +..--++++.+...|..||-++- ..+
T Consensus 119 D~viS~lPll~~P-----------------------~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 119 DSVISGLPLLNFP-----------------------MHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeEEeccccccCc-----------------------HHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 9999988765322 11225788888889999998764 344
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-05 Score=75.57 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=85.5
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
..+.||.|||.|.++-.+.... ..+|..||.++..++.|++.+... ...-.++++.-+.+..|. ..+||+|++.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~-~~~YDlIW~Q 129 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPE-EGKYDLIWIQ 129 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG-----TT-EEEEEEE
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCC-CCcEeEEEeh
Confidence 4689999999999998765433 358999999999999999876531 122367787777554443 4699999993
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE---EEcCC-------------CHHHHH
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI---EHGYN-------------QSNLVR 541 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~---~~~~~-------------~~~~l~ 541 (570)
= . .++ =--+.+-.+++.+...|+|+|++++ ....+ ..+.++
T Consensus 130 W---------------------~-lgh-LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~ 186 (218)
T PF05891_consen 130 W---------------------C-LGH-LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFR 186 (218)
T ss_dssp S-----------------------GGG-S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHH
T ss_pred H---------------------h-hcc-CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHH
Confidence 0 0 000 0113567899999999999999987 11111 247889
Q ss_pred HHHHHCCCeeEEEE
Q psy2395 542 KLLFKYGFSDIKSW 555 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~ 555 (570)
++++++|+..+...
T Consensus 187 ~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 187 ELFKQAGLRLVKEE 200 (218)
T ss_dssp HHHHHCT-EEEEEE
T ss_pred HHHHHcCCEEEEec
Confidence 99999999988644
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-05 Score=74.75 Aligned_cols=125 Identities=16% Similarity=0.172 Sum_probs=100.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+.+.+++|+||--|+++..|.+..+ ...++++|+++..++.|.+|+.+++ +..++++.++|.+..+.. +..+|+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~--l~~~i~vr~~dgl~~l~~-~d~~d~iv 90 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNN--LSERIDVRLGDGLAVLEL-EDEIDVIV 90 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcC--CcceEEEeccCCccccCc-cCCcCEEE
Confidence 3455699999999999999998875 6899999999999999999999863 455799999999776654 34788888
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
. .|- |-..+..++++....|+.--.+++ -|..+...+++++..++|..+
T Consensus 91 I--------------------------AGM-GG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 91 I--------------------------AGM-GGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLSANSYEIK 139 (226)
T ss_pred E--------------------------eCC-cHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHHhCCceee
Confidence 7 121 224788999999988876544443 578899999999999999865
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3e-05 Score=74.31 Aligned_cols=140 Identities=14% Similarity=0.157 Sum_probs=93.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc------cC-
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ------NY- 467 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~------~~- 467 (570)
..++.+|+||||-.|..+..+++....+..|+|+|+.|-. .-..|.++++|++.... ..
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~--------------~~~~V~~iq~d~~~~~~~~~l~~~l~ 108 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK--------------PIPGVIFLQGDITDEDTLEKLLEALG 108 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc--------------cCCCceEEeeeccCccHHHHHHHHcC
Confidence 4678999999999999999999887656679999998753 22348999999976321 11
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCCHHHHHHHHHH
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQSNLVRKLLFK 546 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~l~~ll~~ 546 (570)
..++|+|+|++-=-..... .+ .+..-+..-...+..+..+|+|||.+++ .+-....+.+...+++
T Consensus 109 ~~~~DvV~sD~ap~~~g~~-----~~---------Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~ 174 (205)
T COG0293 109 GAPVDVVLSDMAPNTSGNR-----SV---------DHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR 174 (205)
T ss_pred CCCcceEEecCCCCcCCCc-----cc---------cHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence 1357999997421000000 00 0001123345677778889999999987 4444555666666655
Q ss_pred CCCeeEEEEecCCCCce
Q psy2395 547 YGFSDIKSWRDLSGIER 563 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~~R 563 (570)
.|..+++.+-.+.+.+
T Consensus 175 -~F~~v~~~KP~aSR~~ 190 (205)
T COG0293 175 -LFRKVKIFKPKASRKR 190 (205)
T ss_pred -hhceeEEecCccccCC
Confidence 5888888887666543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00024 Score=68.70 Aligned_cols=142 Identities=18% Similarity=0.157 Sum_probs=94.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~ 473 (570)
.++.+||-+|+.+|.....++.-..+...|+|||.||......-.-++. ..|+-.+.+|+..+.... -+.+|+
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~VDv 146 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEMVDV 146 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--EEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhcccccccE
Confidence 5788999999999999988887765568999999999776655544443 346888999997654332 268999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------CCH----HHHHHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------NQS----NLVRKL 543 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~----~~l~~l 543 (570)
|++|-.- | +-.+-++.++..+||+||.+++.+.. ... ....+.
T Consensus 147 I~~DVaQ----------------p-----------~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~ 199 (229)
T PF01269_consen 147 IFQDVAQ----------------P-----------DQARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKK 199 (229)
T ss_dssp EEEE-SS----------------T-----------THHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHH
T ss_pred EEecCCC----------------h-----------HHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHH
Confidence 9996321 0 13366778888999999999886632 122 234556
Q ss_pred HHHCCCeeEEEEe--cCCCCceEEEEEe
Q psy2395 544 LFKYGFSDIKSWR--DLSGIERVTQGKI 569 (570)
Q Consensus 544 l~~~Gf~~i~~~~--D~~g~~R~~~~~~ 569 (570)
|++.||..++... .+...--+++|++
T Consensus 200 L~~~~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 200 LKEEGFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp HHCTTCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred HHHcCCChheEeccCCCCCCcEEEEEEe
Confidence 7777999876553 2222234566654
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.8e-05 Score=76.49 Aligned_cols=181 Identities=12% Similarity=0.149 Sum_probs=115.5
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHh-hc--CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVK-KT--FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~-~~--~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
.+++++.+.+......+.....+.++- .. .+...+||-+|-|-|--+..+.+. |+-.+|+-||++|.|++.+++|.
T Consensus 255 ~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~ 333 (508)
T COG4262 255 DDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHAT 333 (508)
T ss_pred CceEEEEcCceeeeechhhhhhheeeecccccccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhh
Confidence 456777776655444333333333221 11 134568999999999888888755 55679999999999999999664
Q ss_pred Hh---hccc-CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 443 KK---KLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 443 ~~---~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
-. |... .+.+++++..|+++.+....+.||+||.+.|=-..+. .+.- .-.+|...+
T Consensus 334 vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vIVDl~DP~tps----------------~~rl----YS~eFY~ll 393 (508)
T COG4262 334 VLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVIVDLPDPSTPS----------------IGRL----YSVEFYRLL 393 (508)
T ss_pred HhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEEEeCCCCCCcc----------------hhhh----hhHHHHHHH
Confidence 22 2111 2347999999999988766679999999865221111 1110 113566667
Q ss_pred hhccccCeEEEEEEcCC--CH---HHHHHHHHHCCCeeEE--EEecCCCCceEEEE
Q psy2395 519 SKYLVKNGLLLIEHGYN--QS---NLVRKLLFKYGFSDIK--SWRDLSGIERVTQG 567 (570)
Q Consensus 519 ~~~LkpgG~l~~~~~~~--~~---~~l~~ll~~~Gf~~i~--~~~D~~g~~R~~~~ 567 (570)
.+.|+++|.+++..+.. .. -.+..-++++||...- ++-.-.|..-+++|
T Consensus 394 ~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~~~~Pyhv~VPTFGeWGf~l~ 449 (508)
T COG4262 394 SRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGYRVWPYHVHVPTFGEWGFILA 449 (508)
T ss_pred HHhcCcCceEEEecCCCccCCceeeeehhHHHhCcceeeeeEEecCcccccceeec
Confidence 78999999999866542 22 2356678899987643 23333555555554
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.4e-05 Score=75.38 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=77.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
...++||||+|.|.++..++..+ .+|+++|+|+.|....++. + .+++..|- +...+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~k--------g--~~vl~~~~---w~~~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSKK--------G--FTVLDIDD---WQQTDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHhC--------C--CeEEehhh---hhccCCceEEEee
Confidence 45689999999999999999776 4799999999996544321 1 23332221 2222368999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE--E--------cC--CC--------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE--H--------GY--NQ-------- 536 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~--~--------~~--~~-------- 536 (570)
- ++ |+. .+....+++.+++.|+|+|++++. . +. .+
T Consensus 158 L-------------Nv--------LDR----c~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~ 212 (265)
T PF05219_consen 158 L-------------NV--------LDR----CDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPV 212 (265)
T ss_pred h-------------hh--------hhc----cCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCC
Confidence 1 11 111 122367888999999999998762 2 22 11
Q ss_pred --------HHHHHHHHHHCCCeeEEEE
Q psy2395 537 --------SNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 537 --------~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+.+.++.+||+.....
T Consensus 213 ~g~~~E~~v~~l~~v~~p~GF~v~~~t 239 (265)
T PF05219_consen 213 KGATFEEQVSSLVNVFEPAGFEVERWT 239 (265)
T ss_pred CCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 2334477888999976543
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.6e-05 Score=78.85 Aligned_cols=78 Identities=23% Similarity=0.259 Sum_probs=63.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~ 473 (570)
.++..|||+|+|+|.++..|+..+ .+++++|+++.+++..++... ...+++++.+|+++..... ......
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~-----~~~~~~vi~~D~l~~~~~~~~~~~~~~ 100 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA-----SNPNVEVINGDFLKWDLYDLLKNQPLL 100 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT-----TCSSEEEEES-TTTSCGGGHCSSSEEE
T ss_pred CCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh-----hcccceeeecchhccccHHhhcCCceE
Confidence 467899999999999999999876 589999999999999988765 2557999999998743321 246789
Q ss_pred EEECCCCC
Q psy2395 474 IVANPPYI 481 (570)
Q Consensus 474 Iv~NPPy~ 481 (570)
|++|.||.
T Consensus 101 vv~NlPy~ 108 (262)
T PF00398_consen 101 VVGNLPYN 108 (262)
T ss_dssp EEEEETGT
T ss_pred EEEEeccc
Confidence 99999985
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.4e-05 Score=73.95 Aligned_cols=106 Identities=21% Similarity=0.325 Sum_probs=78.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+....|.|+|||-+-++.. . ..+|+..|+- ..+-.++.+|+.+ +|..+++.|++|
T Consensus 179 ~~~~vIaD~GCGEakiA~~---~---~~kV~SfDL~------------------a~~~~V~~cDm~~-vPl~d~svDvaV 233 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS---E---RHKVHSFDLV------------------AVNERVIACDMRN-VPLEDESVDVAV 233 (325)
T ss_pred cCceEEEecccchhhhhhc---c---ccceeeeeee------------------cCCCceeeccccC-CcCccCcccEEE
Confidence 4567899999999988761 1 2479999973 1224578889866 666678999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EE--cCCCHHHHHHHHHHCCCeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EH--GYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~--~~~~~~~l~~ll~~~Gf~~i 552 (570)
+..... | ..+..|+.++.++|++||.+++ ++ .+.....+.+.+...||...
T Consensus 234 ~CLSLM---------------------g-----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 234 FCLSLM---------------------G-----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred eeHhhh---------------------c-----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 854322 2 2467899999999999999988 44 34566778888999999864
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0001 Score=66.48 Aligned_cols=111 Identities=18% Similarity=0.227 Sum_probs=72.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC-ceeEEEECCCCCCCCCcccCCCCcccccccccc
Q psy2395 424 EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK-LFNIIVANPPYIPKGDIHLNKGDLRFEPINALT 502 (570)
Q Consensus 424 ~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~-~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~ 502 (570)
+|+|+||.++|++.+++.+...+ ...+++++..+=.......+. ++|+++.|.-|.|..+......
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~--~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~----------- 67 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAG--LEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTK----------- 67 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB-------------
T ss_pred CEEEEECHHHHHHHHHHHHHhcC--CCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcC-----------
Confidence 59999999999999999998753 233799998876443333334 8999999999998765422111
Q ss_pred ccCCChHHHHHHHHHHhhccccCeEEEEEE--cCCC----HHHHHHHHHHC---CCeeE
Q psy2395 503 DYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GYNQ----SNLVRKLLFKY---GFSDI 552 (570)
Q Consensus 503 ~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~~~----~~~l~~ll~~~---Gf~~i 552 (570)
.+.--..++.+.+.|+|||.+.+.+ |... .+.+.+++... .|.++
T Consensus 68 -----~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 68 -----PETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp -----HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred -----cHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 1234567888888999999998755 3332 34566666653 46654
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=3.5e-05 Score=72.47 Aligned_cols=103 Identities=20% Similarity=0.390 Sum_probs=77.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+++|||+|+|+|..++..++.+ ...|++.|++|.....++.|+..| +..+.+...|..- . +..||+|+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g--~--~~~~Dl~La 148 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG--S--PPAFDLLLA 148 (218)
T ss_pred ccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC--C--CcceeEEEe
Confidence 57899999999999999999887 478999999999999999999974 6678999999854 2 367999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
.--| |++ ....+++. ....|+..|..+++..+.
T Consensus 149 gDlf--------------y~~-----------~~a~~l~~-~~~~l~~~g~~vlvgdp~ 181 (218)
T COG3897 149 GDLF--------------YNH-----------TEADRLIP-WKDRLAEAGAAVLVGDPG 181 (218)
T ss_pred ecee--------------cCc-----------hHHHHHHH-HHHHHHhCCCEEEEeCCC
Confidence 3222 211 23356666 666777777766654443
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.7e-05 Score=71.59 Aligned_cols=70 Identities=13% Similarity=0.213 Sum_probs=58.3
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.+.|+|+|||.++...|+.. -+|++++.+|.-...|++|+..+ ...+++++.+|+.+.. . ...|+|+|
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~-f--e~ADvvic 102 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYD-F--ENADVVIC 102 (252)
T ss_pred hhceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCC---CCcceEEEeccccccc-c--cccceeHH
Confidence 3689999999999999988764 58999999999999999998653 3447999999996532 2 56899998
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00045 Score=69.50 Aligned_cols=131 Identities=20% Similarity=0.257 Sum_probs=86.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc------------------------------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL------------------------------ 446 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~------------------------------ 446 (570)
.+.+||-.|||.|.++..+|..+ ..+.|.|.|--|+-...--+....
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iP 132 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIP 132 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeC
Confidence 45799999999999999999774 689999999999755543221000
Q ss_pred -------ccCCCCEEEEEcccccccccC--CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 447 -------TKYNIPIKFIKSNWYNNLQNY--KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 447 -------~~~~~~v~~~~~D~~~~l~~~--~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
.....++....||+.+..... .++||+|++. |+- |-...+-+.++.
T Consensus 133 Dv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFI-----------------------DTA~Ni~~Yi~t 187 (270)
T PF07942_consen 133 DVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFI-----------------------DTAENIIEYIET 187 (270)
T ss_pred CcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEe-----------------------echHHHHHHHHH
Confidence 000113455566665543332 2567777764 221 122356788899
Q ss_pred HhhccccCeEEEEEEcC------C-----------CHHHHHHHHHHCCCeeEEEEe
Q psy2395 518 ASKYLVKNGLLLIEHGY------N-----------QSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 518 ~~~~LkpgG~l~~~~~~------~-----------~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
+.++||||| +++-+|+ . ..+++..++...||.++....
T Consensus 188 I~~lLkpgG-~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 188 IEHLLKPGG-YWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred HHHHhccCC-EEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 999999999 5554433 1 247899999999999875443
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.1e-05 Score=73.40 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=63.1
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.+.+.+... .+....++|||||-|++...+..++ -.+++-+|.|-.|++.++.--. .+..+..+.+|- +.+
T Consensus 61 rlaDrvfD~-kk~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~qd-----p~i~~~~~v~DE-E~L 131 (325)
T KOG2940|consen 61 RLADRVFDC-KKSFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQD-----PSIETSYFVGDE-EFL 131 (325)
T ss_pred HHHHHHHHH-hhhCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccCC-----CceEEEEEecch-hcc
Confidence 344444332 2334589999999999999988765 4689999999999998875422 344577788885 556
Q ss_pred ccCCCceeEEEECCCCC
Q psy2395 465 QNYKKLFNIIVANPPYI 481 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~ 481 (570)
+..+.+||+|++....+
T Consensus 132 df~ens~DLiisSlslH 148 (325)
T KOG2940|consen 132 DFKENSVDLIISSLSLH 148 (325)
T ss_pred cccccchhhhhhhhhhh
Confidence 66568999999965433
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00022 Score=78.81 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=90.9
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
..+++|+.....+++.+.. ...+...|.|++||||.+.+...+.. .....++|.++.+.+...|+.|+..++. .+
T Consensus 195 g~~~Tp~~Iv~l~~~~~~~-~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~-~~ 272 (501)
T TIGR00497 195 GEFFTPQDISELLARIAIG-KKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI-DY 272 (501)
T ss_pred ceeeCcHHHHHHHHHHhcc-CCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC-Cc
Confidence 4467788888877765432 12345689999999999987655432 1125699999999999999999765431 11
Q ss_pred CCEEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccc-----cCCChHHHHHHHHHHhhcccc
Q psy2395 451 IPIKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTD-----YSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~-----~~~gl~~~~~~l~~~~~~Lkp 524 (570)
.......+|-+..... ...+||+|++||||...-.....++.. ..+.....+ ...| ..++..+...|++
T Consensus 273 ~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~-~~d~~~~~~~l~~~~~~~----~afi~h~~~~L~~ 347 (501)
T TIGR00497 273 ANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLV-SDVRFKDAGTLAPNSKAD----LAFVLHALYVLGQ 347 (501)
T ss_pred cccCcccCCcCCCccccccccCCEEeecCCcccccccccccccc-cccchhcccCCCCCchhh----HHHHHHHHHhcCC
Confidence 2233444554432111 125799999999996421111111110 001100011 1223 3556666678999
Q ss_pred CeEEEEEEcC
Q psy2395 525 NGLLLIEHGY 534 (570)
Q Consensus 525 gG~l~~~~~~ 534 (570)
||...++.+.
T Consensus 348 gG~~aiI~~~ 357 (501)
T TIGR00497 348 EGTAAIVCFP 357 (501)
T ss_pred CCeEEEEecC
Confidence 9998776543
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.3e-05 Score=66.61 Aligned_cols=100 Identities=19% Similarity=0.194 Sum_probs=43.7
Q ss_pred EEECCcccHHHHHHHHhcCCCc--EEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-CceeEEEECC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKI--EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KLFNIIVANP 478 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~--~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~fD~Iv~NP 478 (570)
||+||..|..++.+++..++.. +++++|..+. .+.++++++.. ....+++++.+|..+.++... ++||+|+.+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 6899999999998887654433 7999999996 33334444322 134469999999977655443 7899999964
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+. -......-++.+.+.|+|||.+++
T Consensus 78 ~H--------------------------~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 78 DH--------------------------SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp -----------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CC--------------------------CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 21 113456778888999999998876
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00048 Score=71.92 Aligned_cols=163 Identities=17% Similarity=0.149 Sum_probs=103.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-ccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~~~~~fD~ 473 (570)
+.++.+|||+|+-.|.=+..+|........|+|.|.+..-+...+.|+.+.|. .+..+...|..+.. ....++||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv---~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV---TNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC---CceEEEccCcccccccccCcccce
Confidence 45789999999999998888887666678999999999999999999998531 13555666664321 122348999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc----CCCHHHHHHHHHHC-C
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG----YNQSNLVRKLLFKY-G 548 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~l~~ll~~~-G 548 (570)
|+.+.|-.-..-....+.+...+-...+. .-...-++++..+..++++||+|++.+. ..+...+.-+|++. .
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~---~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p~ 392 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDIL---RYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRPE 392 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHH---HhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCCc
Confidence 99998865422221111111100000000 0012446899999999999999988543 24444455556665 4
Q ss_pred CeeEEEEecCCCCce
Q psy2395 549 FSDIKSWRDLSGIER 563 (570)
Q Consensus 549 f~~i~~~~D~~g~~R 563 (570)
++.+....++.+--|
T Consensus 393 ~kL~p~~~~iG~~G~ 407 (460)
T KOG1122|consen 393 VKLVPTGLDIGGEGR 407 (460)
T ss_pred eEeccccccCCCCCc
Confidence 555555555544443
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00044 Score=67.12 Aligned_cols=83 Identities=11% Similarity=0.147 Sum_probs=51.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc-----c-cCCCCEEEEEcccccccc--c
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL-----T-KYNIPIKFIKSNWYNNLQ--N 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~-----~-~~~~~v~~~~~D~~~~l~--~ 466 (570)
..++..++|||||.|...+.+|...+ ..+.+|||+.+...+.|+.+..... . ....++.+..+|+.+... .
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 35678999999999999988887764 4569999999999998886554321 0 112368899999876421 1
Q ss_pred CCCceeEEEECC
Q psy2395 467 YKKLFNIIVANP 478 (570)
Q Consensus 467 ~~~~fD~Iv~NP 478 (570)
.-...|+|++|-
T Consensus 119 ~~s~AdvVf~Nn 130 (205)
T PF08123_consen 119 IWSDADVVFVNN 130 (205)
T ss_dssp HGHC-SEEEE--
T ss_pred hhcCCCEEEEec
Confidence 013579999973
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0014 Score=67.92 Aligned_cols=136 Identities=13% Similarity=0.099 Sum_probs=84.3
Q ss_pred CCccccchhHHHHHHHHHhh--cCCCCCEEEEECCcccHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHHH-hhcc
Q psy2395 374 SDVLIPRPETELLVDLIVKK--TFEKKIKLLEMGTGSGAIAIAIAIYSK---NKIEIIATDISKFALKIAKKNAK-KKLT 447 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~--~~~~~~~VLDlGcGtG~i~l~la~~~~---~~~~V~gvDis~~al~~A~~n~~-~~~~ 447 (570)
|.++-.|.+...|-...... ..+++..++|+|||+|.=+..|..... ...+.+++|||.++++.+..++. ..
T Consensus 51 pEYYptr~E~~iL~~~~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~-- 128 (319)
T TIGR03439 51 PEYYLTNDEIEILKKHSSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN-- 128 (319)
T ss_pred CccCChHHHHHHHHHHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc--
Confidence 55554456666665443322 224566899999999987666554331 13679999999999999999987 31
Q ss_pred cCCCCEEEEEcccccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh-c
Q psy2395 448 KYNIPIKFIKSNWYNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK-Y 521 (570)
Q Consensus 448 ~~~~~v~~~~~D~~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~-~ 521 (570)
-....+.-+++|..+.+... .....+++. | .... -.|+| .....+++.+.+ .
T Consensus 129 ~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~f-l----GSsi------GNf~~-----------~ea~~fL~~~~~~~ 186 (319)
T TIGR03439 129 FSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILW-L----GSSI------GNFSR-----------PEAAAFLAGFLATA 186 (319)
T ss_pred CCCeEEEEEEecHHHHHhhcccccccCCccEEEE-e----Cccc------cCCCH-----------HHHHHHHHHHHHhh
Confidence 02234666899987654321 122344443 0 0000 01222 334678888888 9
Q ss_pred cccCeEEEEEEc
Q psy2395 522 LVKNGLLLIEHG 533 (570)
Q Consensus 522 LkpgG~l~~~~~ 533 (570)
|+|||.|++.+.
T Consensus 187 l~~~d~lLiG~D 198 (319)
T TIGR03439 187 LSPSDSFLIGLD 198 (319)
T ss_pred CCCCCEEEEecC
Confidence 999999988653
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00026 Score=69.95 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=62.2
Q ss_pred EEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 453 IKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 453 v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+++++|+.+.+.. +++++|+||++|||....... .... ..+.+..+.+..++.++.++|||||.+++-
T Consensus 2 ~~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~-~~~~---------~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 2 SRFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDR-QGRT---------IAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred CeEEechHHHHHHhCCccccceEEeCCCcccccccC-CCcc---------cccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 35788999876533 348999999999996311000 0000 011223356788999999999999999877
Q ss_pred EcCCCHHHHHHHHHHCCCeeE
Q psy2395 532 HGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 532 ~~~~~~~~l~~ll~~~Gf~~i 552 (570)
++..+...+...+.+.||...
T Consensus 72 ~~~~~~~~~~~al~~~GF~l~ 92 (227)
T PRK13699 72 YGWNRVDRFMAAWKNAGFSVV 92 (227)
T ss_pred eccccHHHHHHHHHHCCCEEe
Confidence 777767777888899999754
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00038 Score=73.77 Aligned_cols=106 Identities=22% Similarity=0.218 Sum_probs=78.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.+|||.-+|||.=++-.+++.+...+|++-|+|+.+++..++|++.|+...+ .+.+.+.|+...+......||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~-~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDE-RIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGC-CEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCc-eEEEehhhHHHHhhhccccCCEEEe
Confidence 356999999999999999999965457999999999999999999998753322 5899999986555333478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
|| |. ....|+..+.+.++.||.+.+..
T Consensus 128 DP-fG----------------------------Sp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 128 DP-FG----------------------------SPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ---SS------------------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-CC----------------------------CccHhHHHHHHHhhcCCEEEEec
Confidence 86 32 22577888888999999998854
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0007 Score=67.70 Aligned_cols=137 Identities=19% Similarity=0.189 Sum_probs=84.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc--------------ccCC-----------C
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL--------------TKYN-----------I 451 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~--------------~~~~-----------~ 451 (570)
++.++||+|||.-...+.-|... ..+|+..|..+.-.+..++-++.-+ .+.. .
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~--f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEW--FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGT--EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHh--hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 46689999999866544334332 3589999999988876665544210 0000 0
Q ss_pred CE-EEEEcccccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 452 PI-KFIKSNWYNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 452 ~v-~~~~~D~~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
.| .++.+|+.+.-+.. +.+||+|++-. .|-.-....+.|...++++.++||||
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~f---------------------cLE~a~~d~~~y~~al~ni~~lLkpG 192 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSF---------------------CLESACKDLDEYRRALRNISSLLKPG 192 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEES---------------------SHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhH---------------------HHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 13 36778886643321 13599888821 11122234678999999999999999
Q ss_pred eEEEEEE---------cC-------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 526 GLLLIEH---------GY-------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 526 G~l~~~~---------~~-------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
|.|++.. |. -+.+.+++.++++||.+....+
T Consensus 193 G~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 193 GHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred cEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEeccc
Confidence 9998732 11 1367889999999998877664
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=64.41 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=49.5
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
.+||+|||.|.++..+++.++ .++|+++|.+|.+++.+++|+..|+. .++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~---~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNL---PNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCC---CcEEEEEeeeeC
Confidence 489999999999999998875 56999999999999999999987532 248888877643
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0003 Score=64.14 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=55.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.+...|+|+|||.|+++..++..+ .++.+|+|||.++..++.|.+..+........++.+..++...... ....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS--SDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc--cCCCe
Confidence 456799999999999999999822 1368999999999999999988876432222356666666543221 23455
Q ss_pred EEEE
Q psy2395 473 IIVA 476 (570)
Q Consensus 473 ~Iv~ 476 (570)
+++.
T Consensus 102 ~~vg 105 (141)
T PF13679_consen 102 ILVG 105 (141)
T ss_pred EEEE
Confidence 5554
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.002 Score=65.54 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=88.0
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeEEEECC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANP 478 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NP 478 (570)
+++|++||.|.++..+...+ ...|+++|+++.+++..+.|... .++++|+.+..... ...+|+++..|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~---------~~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN---------KLIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC---------CCccCccccCchhhcCCCCCEEEeCC
Confidence 68999999999998887665 34689999999999999888752 15667776543321 35799999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------CCHHHHHHHHHHCCCe
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------NQSNLVRKLLFKYGFS 550 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~l~~ll~~~Gf~ 550 (570)
|.-..+....... ..+++ -..+..+++.+. .++|. ++++|--. .....+...|++.||.
T Consensus 71 PCq~fS~ag~~~~--~~d~r---------~~L~~~~~~~i~-~~~P~-~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~ 137 (275)
T cd00315 71 PCQPFSIAGKRKG--FEDTR---------GTLFFEIIRILK-EKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYN 137 (275)
T ss_pred CChhhhHHhhcCC--CCCch---------HHHHHHHHHHHH-hcCCC-EEEEEcCcchhccCchHHHHHHHHHHHhCCcE
Confidence 9754332110000 00111 123444554333 45665 45554311 1235567778889998
Q ss_pred eEEEEec------CCCCceEEE
Q psy2395 551 DIKSWRD------LSGIERVTQ 566 (570)
Q Consensus 551 ~i~~~~D------~~g~~R~~~ 566 (570)
.....-+ -+.+.|+++
T Consensus 138 ~~~~~l~a~~~GvPQ~R~R~~~ 159 (275)
T cd00315 138 VYWKLLNASDYGVPQNRERVFI 159 (275)
T ss_pred EEEEEEEHHHcCCCCCCcEEEE
Confidence 6443333 356778764
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0011 Score=64.06 Aligned_cols=128 Identities=20% Similarity=0.342 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhhcCC-----CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 382 ETELLVDLIVKKTFE-----KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 382 ~t~~l~~~~~~~~~~-----~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
.+..+++|+...... ...++||+||=+....+.-.. -..|+.||+++.- -.+.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~------------------~~I~ 88 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH------------------PGIL 88 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCCC------------------CCce
Confidence 456778888765432 236999999986665544332 2469999997621 2367
Q ss_pred Ecccccc-ccc-CCCceeEEEECC--CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeE-----
Q psy2395 457 KSNWYNN-LQN-YKKLFNIIVANP--PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGL----- 527 (570)
Q Consensus 457 ~~D~~~~-l~~-~~~~fD~Iv~NP--Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~----- 527 (570)
+.|+++- ++. ..++||+|++.. -|+|.+ ..--+++..+.++|+|+|.
T Consensus 89 qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p------------------------~~RG~Ml~r~~~fL~~~g~~~~~~ 144 (219)
T PF11968_consen 89 QQDFMERPLPKNESEKFDVISLSLVLNFVPDP------------------------KQRGEMLRRAHKFLKPPGLSLFPS 144 (219)
T ss_pred eeccccCCCCCCcccceeEEEEEEEEeeCCCH------------------------HHHHHHHHHHHHHhCCCCccCcce
Confidence 7777763 331 247899999852 233322 1124688899999999999
Q ss_pred EEEEEcCC--------CHHHHHHHHHHCCCeeEEEE
Q psy2395 528 LLIEHGYN--------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 528 l~~~~~~~--------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
++++.|.. ..+.+..+|...||..++..
T Consensus 145 LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 145 LFLVLPLPCVTNSRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred EEEEeCchHhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence 88877652 35778999999999987653
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0045 Score=63.93 Aligned_cols=86 Identities=12% Similarity=0.178 Sum_probs=61.4
Q ss_pred cchhHHHHHHHHHhhc--------CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 379 PRPETELLVDLIVKKT--------FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~--------~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
|...+..|.+.+.... ..++.++||+||++|.++..+++.+ ++|+|||..+-. . .+. ..
T Consensus 185 pSRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~l~----~-~L~-----~~ 251 (357)
T PRK11760 185 PSRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGPMA----Q-SLM-----DT 251 (357)
T ss_pred CChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechhcC----H-hhh-----CC
Confidence 4445556655544332 2467899999999999999999764 599999966522 1 122 34
Q ss_pred CCEEEEEcccccccccCCCceeEEEECC
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|..+.+|.+...+. .+++|+++|+-
T Consensus 252 ~~V~h~~~d~fr~~p~-~~~vDwvVcDm 278 (357)
T PRK11760 252 GQVEHLRADGFKFRPP-RKNVDWLVCDM 278 (357)
T ss_pred CCEEEEeccCcccCCC-CCCCCEEEEec
Confidence 5799999998876653 47899999963
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00065 Score=70.13 Aligned_cols=102 Identities=19% Similarity=0.308 Sum_probs=80.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|+|.-+|||.=++-.|.+.+ ..+|+.-|+||.+++.+++|+..| .+.+...+..|+...+......||+|=.+
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~IDiD 128 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVIDID 128 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEecC
Confidence 67999999999999999999876 349999999999999999999985 24456677788866555444789999887
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
| |.+ ...|+..+.+.++.||++.+..
T Consensus 129 P-FGS----------------------------PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 129 P-FGS----------------------------PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred C-CCC----------------------------CchHHHHHHHHhhcCCEEEEEe
Confidence 5 332 1356677777888899998743
|
|
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0014 Score=61.28 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=85.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc-ccccccc-------cC
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS-NWYNNLQ-------NY 467 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~-D~~~~l~-------~~ 467 (570)
.++.+|||+||-.|..+....+...++..|.|||+-+-. .-..+.++++ |+.++.. .+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~--------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE--------------PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc--------------CCCCcccccccccCCHHHHHHHHHhCC
Confidence 578899999999999999988887567899999985321 1112556666 6654311 12
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHH
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFK 546 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~ 546 (570)
+.+.|+|+++.--...... ...|+ ..++.-..++-.+...++|+|.+++-+ ..++...+++.|.+
T Consensus 134 ~r~VdvVlSDMapnaTGvr-----~~Dh~---------~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~ 199 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVR-----IRDHY---------RSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQA 199 (232)
T ss_pred CCcccEEEeccCCCCcCcc-----hhhHH---------HHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHH
Confidence 3689999997321111100 00010 112233345566778899999998854 34555666666665
Q ss_pred CCCeeEEEEecCCC
Q psy2395 547 YGFSDIKSWRDLSG 560 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g 560 (570)
-|+.|+..+.-+.
T Consensus 200 -~f~~Vk~vKP~As 212 (232)
T KOG4589|consen 200 -VFTNVKKVKPDAS 212 (232)
T ss_pred -HhhhcEeeCCccc
Confidence 4888877765444
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00056 Score=70.06 Aligned_cols=86 Identities=17% Similarity=0.161 Sum_probs=66.0
Q ss_pred HHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-
Q psy2395 388 DLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ- 465 (570)
Q Consensus 388 ~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~- 465 (570)
+.++..+. .++..++|.-||.|..+..++...+ .++|+|+|.|+.+++.|++++.. ...++.++++++.+...
T Consensus 10 ~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~----~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 10 DEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSD----FEGRVVLIHDNFANFFEH 84 (305)
T ss_pred HHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhh----cCCcEEEEeCCHHHHHHH
Confidence 33444332 4677999999999999999998875 48999999999999999998864 35579999999865322
Q ss_pred --c-CCCceeEEEECC
Q psy2395 466 --N-YKKLFNIIVANP 478 (570)
Q Consensus 466 --~-~~~~fD~Iv~NP 478 (570)
. ...++|.|+.|.
T Consensus 85 l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 85 LDELLVTKIDGILVDL 100 (305)
T ss_pred HHhcCCCcccEEEEec
Confidence 1 114699999853
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0035 Score=61.22 Aligned_cols=123 Identities=17% Similarity=0.197 Sum_probs=85.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE-EEEcccccccc-cCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK-FIKSNWYNNLQ-NYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~-~~~~D~~~~l~-~~~~~fD~ 473 (570)
.++..+||+|+.||.++-.+.+.+ ..+|+|+|..-..+..--++ +.++. +...|+....+ ...+..|+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~~~~d~ 147 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFTEKPDL 147 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcccCCCe
Confidence 578899999999999999999886 47999999988777654332 33443 34455533211 12257899
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------CC-----------
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------NQ----------- 536 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------~~----------- 536 (570)
|+++-.|+ ....++..+..+++|+|.++.-+.+ ..
T Consensus 148 ~v~DvSFI----------------------------SL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~ 199 (245)
T COG1189 148 IVIDVSFI----------------------------SLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPK 199 (245)
T ss_pred EEEEeehh----------------------------hHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCceecCcc
Confidence 99987776 3467788888889998887653311 11
Q ss_pred -----HHHHHHHHHHCCCeeEEEEe
Q psy2395 537 -----SNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 537 -----~~~l~~ll~~~Gf~~i~~~~ 556 (570)
...+.+++.+.||....+..
T Consensus 200 ~~~~v~~~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 200 LHAEVLSKIENFAKELGFQVKGLIK 224 (245)
T ss_pred hHHHHHHHHHHHHhhcCcEEeeeEc
Confidence 24677788888999876554
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0035 Score=55.47 Aligned_cols=102 Identities=17% Similarity=0.277 Sum_probs=66.8
Q ss_pred EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC-EEEEEcccccc-cccCC-CceeEEEEC
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSNWYNN-LQNYK-KLFNIIVAN 477 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~-v~~~~~D~~~~-l~~~~-~~fD~Iv~N 477 (570)
++|+|||+|... .++........++|+|+++.++..++..... .... +.+..+|.... .+... ..||++.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 126 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG----AGLGLVDFVVADALGGVLPFEDSASFDLVISL 126 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh----cCCCceEEEEeccccCCCCCCCCCceeEEeee
Confidence 999999999976 3333332124899999999999995554431 0111 67888887652 34322 379999443
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
..+... . ....+..+.+.|+|+|.+++...
T Consensus 127 ~~~~~~-------------------------~-~~~~~~~~~~~l~~~g~~~~~~~ 156 (257)
T COG0500 127 LVLHLL-------------------------P-PAKALRELLRVLKPGGRLVLSDL 156 (257)
T ss_pred eehhcC-------------------------C-HHHHHHHHHHhcCCCcEEEEEec
Confidence 221100 0 36788888899999999887554
|
|
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00033 Score=63.86 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHhhcC-CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc
Q psy2395 381 PETELLVDLIVKKTF-EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~-~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~ 458 (570)
|..+.+.-.++.... -.+.+||++|.| +|.-++.+|...+ ...|..+|-++++++..++....|-.....++..+.-
T Consensus 12 pseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw 90 (201)
T KOG3201|consen 12 PSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRW 90 (201)
T ss_pred ccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHH
Confidence 555666555554321 145789999999 6666777777765 5899999999999998887765531111123333333
Q ss_pred cccccc-ccCCCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--
Q psy2395 459 NWYNNL-QNYKKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-- 534 (570)
Q Consensus 459 D~~~~l-~~~~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-- 534 (570)
++.... ......||.|++-- -|+ -++...++..+..+|+|.|..++..|.
T Consensus 91 ~~~~aqsq~eq~tFDiIlaADClFf--------------------------dE~h~sLvdtIk~lL~p~g~Al~fsPRRg 144 (201)
T KOG3201|consen 91 LIWGAQSQQEQHTFDIILAADCLFF--------------------------DEHHESLVDTIKSLLRPSGRALLFSPRRG 144 (201)
T ss_pred HHhhhHHHHhhCcccEEEeccchhH--------------------------HHHHHHHHHHHHHHhCcccceeEecCccc
Confidence 332211 11225899999821 111 135578899999999999996554432
Q ss_pred CCHHHHHHHHHHCCCeeE
Q psy2395 535 NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 535 ~~~~~l~~ll~~~Gf~~i 552 (570)
.....+.+.....||.+.
T Consensus 145 ~sL~kF~de~~~~gf~v~ 162 (201)
T KOG3201|consen 145 QSLQKFLDEVGTVGFTVC 162 (201)
T ss_pred chHHHHHHHHHhceeEEE
Confidence 234555566667788754
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00062 Score=72.96 Aligned_cols=114 Identities=13% Similarity=0.238 Sum_probs=66.9
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEE---eCCHHHHHHHHHHHHhhcccCCCCEEEEEccc-ccccccCCCceeEEE
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIAT---DISKFALKIAKKNAKKKLTKYNIPIKFIKSNW-YNNLQNYKKLFNIIV 475 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gv---Dis~~al~~A~~n~~~~~~~~~~~v~~~~~D~-~~~l~~~~~~fD~Iv 475 (570)
.+||+|||+|.++..|..+. ..+..+ |..+..++.|.+. +.. -+.+-+ ..-++.+...||+|-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR--------Gvp--a~~~~~~s~rLPfp~~~fDmvH 186 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER--------GVP--AMIGVLGSQRLPFPSNAFDMVH 186 (506)
T ss_pred EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc--------Ccc--hhhhhhccccccCCccchhhhh
Confidence 68999999999999998543 333222 4444555555432 111 111111 234677778999998
Q ss_pred EC---CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC----------HHHHHH
Q psy2395 476 AN---PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ----------SNLVRK 542 (570)
Q Consensus 476 ~N---PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~l~~ 542 (570)
|- -|++.. +| .++-++.|+|+|||++++.-++-. -..+.+
T Consensus 187 csrc~i~W~~~----------------------~g-----~~l~evdRvLRpGGyfv~S~ppv~~r~~~~~~~~~~~~~~ 239 (506)
T PF03141_consen 187 CSRCLIPWHPN----------------------DG-----FLLFEVDRVLRPGGYFVLSGPPVYQRTDEDLEEEWNAMED 239 (506)
T ss_pred cccccccchhc----------------------cc-----ceeehhhhhhccCceEEecCCcccccchHHHHHHHHHHHH
Confidence 83 222211 12 255578899999999998665422 123455
Q ss_pred HHHHCCCeeEE
Q psy2395 543 LLFKYGFSDIK 553 (570)
Q Consensus 543 ll~~~Gf~~i~ 553 (570)
+.++..|+.+.
T Consensus 240 l~~~lCW~~va 250 (506)
T PF03141_consen 240 LAKSLCWKKVA 250 (506)
T ss_pred HHHHHHHHHhe
Confidence 55555555443
|
; GO: 0008168 methyltransferase activity |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.014 Score=55.59 Aligned_cols=127 Identities=18% Similarity=0.158 Sum_probs=89.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc--CCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--YKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~ 473 (570)
+++.+||=+|+-+|.....++.-.+ ...|+|||.||......-.-+.. ..++-.+.+|+..+... .-+..|+
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-----R~Ni~PIL~DA~~P~~Y~~~Ve~VDv 148 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-----RPNIIPILEDARKPEKYRHLVEKVDV 148 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-----CCCceeeecccCCcHHhhhhcccccE
Confidence 5788999999999999988887765 57899999999887666555543 34578888998665432 1267999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------CHH----HHHHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------QSN----LVRKL 543 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~----~l~~l 543 (570)
|+.+-.- | +-.+-+..++..+|++||.+++.+... .++ ...+.
T Consensus 149 iy~DVAQ----------------p-----------~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~k 201 (231)
T COG1889 149 IYQDVAQ----------------P-----------NQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEK 201 (231)
T ss_pred EEEecCC----------------c-----------hHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHH
Confidence 9985210 0 123567788899999999887755321 222 23345
Q ss_pred HHHCCCeeEEEE
Q psy2395 544 LFKYGFSDIKSW 555 (570)
Q Consensus 544 l~~~Gf~~i~~~ 555 (570)
|.+.||..++..
T Consensus 202 L~~~~f~i~e~~ 213 (231)
T COG1889 202 LEEGGFEILEVV 213 (231)
T ss_pred HHhcCceeeEEe
Confidence 667788877654
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0059 Score=62.11 Aligned_cols=126 Identities=18% Similarity=0.143 Sum_probs=73.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc-ccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN-NLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~-~l~~~~~~fD~Iv 475 (570)
.+.+|||+|||+|.-+.++...++.-.+++++|.|+.|++.++.-+... ..........+... ..+. .+.|+|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~--~~~DLvi 107 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG---PNNRNAEWRRVLYRDFLPF--PPDDLVI 107 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc---cccccchhhhhhhcccccC--CCCcEEE
Confidence 4679999999999877777666554568999999999999999877642 11111111111211 1111 3349999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCC----HHHHHHHHHHCCCe
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQ----SNLVRKLLFKYGFS 550 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~----~~~l~~ll~~~Gf~ 550 (570)
+.--...- .+ .....+++.++..+.+ .+++ |-|... ...+++.|.+.|+.
T Consensus 108 ~s~~L~EL----------------------~~-~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~aR~~l~~~~~~ 162 (274)
T PF09243_consen 108 ASYVLNEL----------------------PS-AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAEARDQLLEKGAH 162 (274)
T ss_pred EehhhhcC----------------------Cc-hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHHHHHHHhhCCCc
Confidence 83111100 01 2335677777777665 4443 433332 34566667667776
Q ss_pred eE
Q psy2395 551 DI 552 (570)
Q Consensus 551 ~i 552 (570)
++
T Consensus 163 v~ 164 (274)
T PF09243_consen 163 VV 164 (274)
T ss_pred eE
Confidence 54
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00074 Score=69.12 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=57.8
Q ss_pred CEEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 452 PIKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
...++++|+.+.+.. .+++||+|++||||............ . ...+-.+.+..++..+.++|||||.+++
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~--------~-~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEA--------W-KEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCccccccccccccc--------c-cHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 357899999875432 24789999999999742211000000 0 0111224467899999999999999998
Q ss_pred EEcCCCHHHHHHHHHHCCCeeE
Q psy2395 531 EHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 531 ~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
.++......+ .++.+.||...
T Consensus 79 ~~~~~~~~~~-~~~~~~~f~~~ 99 (284)
T PRK11524 79 MNSTENMPFI-DLYCRKLFTIK 99 (284)
T ss_pred EcCchhhhHH-HHHHhcCcceE
Confidence 7766555543 44556677543
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0044 Score=64.11 Aligned_cols=162 Identities=16% Similarity=0.190 Sum_probs=100.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc--c------
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSK---NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN--L------ 464 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~---~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~--l------ 464 (570)
.++.+|||+|+-.|.=++.+..... ....|++-|+++.-+.....-+... ....+.+...|+... .
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceeccccccccCc
Confidence 6889999999999998887776542 1238999999999988887766432 233344444443211 1
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccc-cccccccCCChH-HHHHHHHHHhhccccCeEEEEEEcC----CCHH
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEP-INALTDYSNGLS-SIKEIVKNASKYLVKNGLLLIEHGY----NQSN 538 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep-~~al~~~~~gl~-~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~ 538 (570)
......||-|+++-|-............. .+ +... ..-++. .--.++....+.||+||.++..+.. .+..
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~--~~~w~~~--~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEa 306 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIW--KEGWKTQ--RALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEA 306 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHh--hhhhhhh--hccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHH
Confidence 11125799999998854432211111111 11 1100 012332 3357899999999999999986532 4455
Q ss_pred HHHHHHHHCC--CeeEEEEecCCCCceE
Q psy2395 539 LVRKLLFKYG--FSDIKSWRDLSGIERV 564 (570)
Q Consensus 539 ~l~~ll~~~G--f~~i~~~~D~~g~~R~ 564 (570)
-+.++++..| +..+.+..++.+.-|+
T Consensus 307 VV~~~L~~~~~~~~lv~~~~~lp~l~r~ 334 (375)
T KOG2198|consen 307 VVQEALQKVGGAVELVDVSGDLPGLKRM 334 (375)
T ss_pred HHHHHHHHhcCcccceeeccccccceec
Confidence 5677777654 6667777777666554
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0014 Score=64.35 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=50.2
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC------CCEEEEEcccccccccCCCcee
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN------IPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~------~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.+|||.-||-|.-++.+|..+ ++|+++|-||-...+.+.-+........ .+++++.+|..+.+.....+||
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G---~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~D 153 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG---CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFD 153 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--S
T ss_pred CEEEECCCcchHHHHHHHccC---CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCC
Confidence 489999999999999999653 6899999999776666644433211122 2699999999887775458999
Q ss_pred EEEECCCCCC
Q psy2395 473 IIVANPPYIP 482 (570)
Q Consensus 473 ~Iv~NPPy~~ 482 (570)
+|.++|-|-.
T Consensus 154 VVY~DPMFp~ 163 (234)
T PF04445_consen 154 VVYFDPMFPE 163 (234)
T ss_dssp EEEE--S---
T ss_pred EEEECCCCCC
Confidence 9999998854
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0033 Score=63.55 Aligned_cols=146 Identities=15% Similarity=0.176 Sum_probs=74.1
Q ss_pred CCCEEEEECCcccHH-HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAI-AIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i-~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+.+|+=||||.=-+ ++.+++....+..|+++|+|+++++.|++-.... .+++.++.|+++|..+.... -..||+|+
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~d-l~~~DvV~ 197 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYD-LKEYDVVF 197 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG-----SEEE
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccc-cccCCEEE
Confidence 346999999995544 5555544333578999999999999999877621 12466799999998654322 25799998
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH----HHHHHHHHHCCCee
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS----NLVRKLLFKYGFSD 551 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~----~~l~~ll~~~Gf~~ 551 (570)
.. |+.|.... .-.+++..+.+.++||..+++-...+-. +.+ +-..-.||..
T Consensus 198 lA----------------------alVg~~~e--~K~~Il~~l~~~m~~ga~l~~Rsa~GlR~~LYp~v-d~~~l~gf~~ 252 (276)
T PF03059_consen 198 LA----------------------ALVGMDAE--PKEEILEHLAKHMAPGARLVVRSAHGLRSFLYPVV-DPEDLRGFEV 252 (276)
T ss_dssp E-----------------------TT-S------SHHHHHHHHHHHS-TTSEEEEEE--GGGGGSS-----TGGGTTEEE
T ss_pred Eh----------------------hhcccccc--hHHHHHHHHHhhCCCCcEEEEecchhhHHHcCCCC-ChHHCCCeEE
Confidence 82 23331111 1268999999999999999885433211 111 1001128988
Q ss_pred EEEEecC-CCCceEEEEEe
Q psy2395 552 IKSWRDL-SGIERVTQGKI 569 (570)
Q Consensus 552 i~~~~D~-~g~~R~~~~~~ 569 (570)
..+..-. .=.+-++++|+
T Consensus 253 ~~~~hP~~~ViNSvv~~rk 271 (276)
T PF03059_consen 253 LAVVHPTDEVINSVVFARK 271 (276)
T ss_dssp EEEE---TT---EEEEE--
T ss_pred EEEECCCCCceeEEEEEEe
Confidence 6555433 23446666654
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0052 Score=58.84 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~ 473 (570)
..++.+||.+|-|-|.+...+-.. ++ .+=+-+|.+|+.++..+.+... ...+|-++.|-+.+.++.. ++.||-
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~gw~----ek~nViil~g~WeDvl~~L~d~~FDG 172 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDWGWR----EKENVIILEGRWEDVLNTLPDKHFDG 172 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhcccc----cccceEEEecchHhhhccccccCcce
Confidence 357889999999999988877654 43 4556789999999999988764 3456888888776554432 367999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
|+-+. |. .-.+.+..+.+.+.++|||+|.+-+.-+.
T Consensus 173 I~yDT-y~------------------------e~yEdl~~~hqh~~rLLkP~gv~SyfNg~ 208 (271)
T KOG1709|consen 173 IYYDT-YS------------------------ELYEDLRHFHQHVVRLLKPEGVFSYFNGL 208 (271)
T ss_pred eEeec-hh------------------------hHHHHHHHHHHHHhhhcCCCceEEEecCc
Confidence 99852 10 11245677888899999999999765443
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0032 Score=62.22 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
+.+.+.+.... +.+.+|+|||||.--+++.+....+ +..++|+|||..+++....-+.. .+.+..+...|+...
T Consensus 93 d~fY~~if~~~-~~p~sVlDigCGlNPlalp~~~~~~-~a~Y~a~DID~~~ve~l~~~l~~----l~~~~~~~v~Dl~~~ 166 (251)
T PF07091_consen 93 DEFYDEIFGRI-PPPDSVLDIGCGLNPLALPWMPEAP-GATYIAYDIDSQLVEFLNAFLAV----LGVPHDARVRDLLSD 166 (251)
T ss_dssp HHHHHHHCCCS----SEEEEET-TTCHHHHHTTTSST-T-EEEEEESBHHHHHHHHHHHHH----TT-CEEEEEE-TTTS
T ss_pred HHHHHHHHhcC-CCCchhhhhhccCCceehhhcccCC-CcEEEEEeCCHHHHHHHHHHHHh----hCCCcceeEeeeecc
Confidence 44455554432 3478999999999999998875544 68999999999999999988776 566788888899776
Q ss_pred cccCCCceeEEEE
Q psy2395 464 LQNYKKLFNIIVA 476 (570)
Q Consensus 464 l~~~~~~fD~Iv~ 476 (570)
.+. ...|+.+.
T Consensus 167 ~~~--~~~DlaLl 177 (251)
T PF07091_consen 167 PPK--EPADLALL 177 (251)
T ss_dssp HTT--SEESEEEE
T ss_pred CCC--CCcchhhH
Confidence 443 67898887
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.013 Score=58.67 Aligned_cols=140 Identities=12% Similarity=0.175 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhhcCCC-C-CEEEEECCcc--cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy2395 382 ETELLVDLIVKKTFEK-K-IKLLEMGTGS--GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK 457 (570)
Q Consensus 382 ~t~~l~~~~~~~~~~~-~-~~VLDlGcGt--G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~ 457 (570)
.++.++..+...+... + ..+||||||- -...-.+|+...+.++|+=||++|-.+..++..+..+ ......+++
T Consensus 51 ~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---~~g~t~~v~ 127 (267)
T PF04672_consen 51 ANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---PRGRTAYVQ 127 (267)
T ss_dssp HHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----TTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---CCccEEEEe
Confidence 3444445555544333 3 3699999993 2334555655555899999999999999999888742 112489999
Q ss_pred cccccccccC-----------CCceeEEEEC-CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 458 SNWYNNLQNY-----------KKLFNIIVAN-PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 458 ~D~~~~l~~~-----------~~~fD~Iv~N-PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
+|+.++-.-. +.+.=+++.. .+|++. -+....++....+.|.||
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D------------------------~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPD------------------------DDDPAGIVARLRDALAPG 183 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-C------------------------GCTHHHHHHHHHCCS-TT
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCC------------------------ccCHHHHHHHHHHhCCCC
Confidence 9997642111 1222233221 112211 123478899999999999
Q ss_pred eEEEEEEcCC--CH---HHHHHHHHHCC
Q psy2395 526 GLLLIEHGYN--QS---NLVRKLLFKYG 548 (570)
Q Consensus 526 G~l~~~~~~~--~~---~~l~~ll~~~G 548 (570)
.++++.+... .. ..+...+.+.|
T Consensus 184 S~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 184 SYLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp -EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 9999976432 22 33555555544
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.006 Score=62.85 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=74.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
-...+|+|.|.|.++-.+...+| +|-+++.+...+-.+..+.. ..|..+-+|.+...| +-|+|++
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~~P----~~daI~m- 242 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQDTP----KGDAIWM- 242 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-------CCcceecccccccCC----CcCeEEE-
Confidence 46899999999999999988765 58999999988888877763 128889999988754 3568887
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.+.-+.-.-+...+|++++++.|+|||.+++
T Consensus 243 ----------------------kWiLhdwtDedcvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 243 ----------------------KWILHDWTDEDCVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred ----------------------EeecccCChHHHHHHHHHHHHhCCCCCEEEE
Confidence 1222223345668999999999999999887
|
|
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.019 Score=53.47 Aligned_cols=136 Identities=15% Similarity=0.244 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
.....|++.+... ..+..+|+=|||=|-...+.-. . ....+++..|+|...-.. +.+ .|+.-|.
T Consensus 10 ~T~~~l~~~l~~~-~~~~~~iaclstPsl~~~l~~~-~-~~~~~~~Lle~D~RF~~~------------~~~-~F~fyD~ 73 (162)
T PF10237_consen 10 ETAEFLARELLDG-ALDDTRIACLSTPSLYEALKKE-S-KPRIQSFLLEYDRRFEQF------------GGD-EFVFYDY 73 (162)
T ss_pred HHHHHHHHHHHHh-cCCCCEEEEEeCcHHHHHHHhh-c-CCCccEEEEeecchHHhc------------CCc-ceEECCC
Confidence 3455666666553 2356799999998877766541 2 225789999999876321 222 3555555
Q ss_pred cccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH
Q psy2395 461 YNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS 537 (570)
Q Consensus 461 ~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 537 (570)
..+... ..++||+||++|||... +........+..++++++.+++.+|....
T Consensus 74 ~~p~~~~~~l~~~~d~vv~DPPFl~~-------------------------ec~~k~a~ti~~L~k~~~kii~~Tg~~~~ 128 (162)
T PF10237_consen 74 NEPEELPEELKGKFDVVVIDPPFLSE-------------------------ECLTKTAETIRLLLKPGGKIILCTGEEME 128 (162)
T ss_pred CChhhhhhhcCCCceEEEECCCCCCH-------------------------HHHHHHHHHHHHHhCccceEEEecHHHHH
Confidence 443221 23799999999999643 24456666667777889999999988888
Q ss_pred HHHHHHHHHCCCeeEEEEecCCC
Q psy2395 538 NLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 538 ~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
+.+.+++ |++.........+
T Consensus 129 ~~~~~ll---~~~~~~f~p~h~~ 148 (162)
T PF10237_consen 129 ELIKKLL---GLRMCDFQPEHPN 148 (162)
T ss_pred HHHHHHh---CeeEEeEEecccc
Confidence 8888877 7777666655443
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0026 Score=62.10 Aligned_cols=54 Identities=26% Similarity=0.260 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..|++.++.....++..|||.+||||..++++.+.+ .+.+|+|+++..++.|++
T Consensus 178 ~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~---R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELG---RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhhccceeeehhhhccChHHHHHHHcC---CeEEEEeCCHHHHHHhcC
Confidence 556666666556788999999999999999887664 579999999999999975
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0034 Score=64.21 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..|++.++.....+++.|||.+||||..++++.+.+ -+.+|+|++++.++.|++.+..
T Consensus 195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lg---R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASG---RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh
Confidence 566666666656789999999999999999887665 4799999999999999998763
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.02 Score=56.83 Aligned_cols=130 Identities=18% Similarity=0.267 Sum_probs=93.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC-CEEEEEccccccccc-CCCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQN-YKKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~-~~~~fD~I 474 (570)
.+..|+-+| ---..+++++..+- ..+|.-+||++..+....+-++.. +. ++..+.-|+.+++|. ...+||+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~m-pk~iaVvDIDERli~fi~k~aee~----g~~~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGM-PKRIAVVDIDERLIKFIEKVAEEL----GYNNIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCC-CceEEEEechHHHHHHHHHHHHHh----CccchhheeehhcccChHHHHhhCCee
Confidence 466799988 55556677665543 368999999999999999999874 44 388999999887764 23789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC---eEEEEEEcCCCH---HHHHH-HHHHC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN---GLLLIEHGYNQS---NLVRK-LLFKY 547 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~---~~l~~-ll~~~ 547 (570)
+.+||+-- ..++.|+......||.- |++.+....... .++++ +..+.
T Consensus 226 iTDPpeTi--------------------------~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~ 279 (354)
T COG1568 226 ITDPPETI--------------------------KALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEM 279 (354)
T ss_pred ecCchhhH--------------------------HHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhc
Confidence 99999752 24567777777778766 777765554443 34566 56678
Q ss_pred CCeeEEEEecC
Q psy2395 548 GFSDIKSWRDL 558 (570)
Q Consensus 548 Gf~~i~~~~D~ 558 (570)
||.+..+.+++
T Consensus 280 gvVITdiirnF 290 (354)
T COG1568 280 GVVITDIIRNF 290 (354)
T ss_pred CeeeHhhhhhh
Confidence 88765555443
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.012 Score=56.01 Aligned_cols=119 Identities=15% Similarity=0.171 Sum_probs=74.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc----cCCCCEEEEEcccccccccCC--Cc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT----KYNIPIKFIKSNWYNNLQNYK--KL 470 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~----~~~~~v~~~~~D~~~~l~~~~--~~ 470 (570)
....+.|||||-|.+.+.|+-.+| ..-+.|.||-....+..+..+..... +.-.++.+...+++..++..- +.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgq 138 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQ 138 (249)
T ss_pred ccceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcc
Confidence 345799999999999999998887 68899999999999988888775421 112247788888776665321 22
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
.+-++. ..++.+.-.. .+ .+.-.-..++.+..-+|++||.++..+.
T Consensus 139 Lskmff-----~fpdpHfk~~--kh----------k~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115|consen 139 LSKMFF-----LFPDPHFKAR--KH----------KWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred ccccee-----ecCChhHhhh--hc----------cceeechhHHHHHHhhhhcCceEEEEee
Confidence 222221 1111110000 00 0001124567777789999999987654
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.011 Score=67.98 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=85.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-------CC----CcEEEEEeCCHH---HHHHHH-----------HHHHh-----hc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-------KN----KIEIIATDISKF---ALKIAK-----------KNAKK-----KL 446 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-------~~----~~~V~gvDis~~---al~~A~-----------~n~~~-----~~ 446 (570)
..-+|+|+|-|+|...+...+.+ ++ ..+++++|..|- -+..+. ..... .+
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 45799999999999877666443 11 358999998662 222221 11111 00
Q ss_pred c------cCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh
Q psy2395 447 T------KYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 447 ~------~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
. .....+++..||+.+.++.....||+|+.++ |.|...+ .+ .-..++..+.+
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~-FsP~~np-----------~~----------W~~~~~~~l~~ 194 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG-FAPAKNP-----------DM----------WSPNLFNALAR 194 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC-CCCccCh-----------hh----------ccHHHHHHHHH
Confidence 0 0112466888999877765556799999985 2222211 00 11678889999
Q ss_pred ccccCeEEEEEEcCCCHHHHHHHHHHCCCeeE
Q psy2395 521 YLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 521 ~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
+++|||.+. .+.....+++-|..+||.+-
T Consensus 195 ~~~~~~~~~---t~t~a~~vr~~l~~~GF~v~ 223 (662)
T PRK01747 195 LARPGATLA---TFTSAGFVRRGLQEAGFTVR 223 (662)
T ss_pred HhCCCCEEE---EeehHHHHHHHHHHcCCeee
Confidence 999999886 34577889999999999754
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0086 Score=59.19 Aligned_cols=58 Identities=10% Similarity=0.096 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..|++.++.....++..|||..||||..+++..+.+ .+.+|+|+++...+.|.+.+..
T Consensus 150 ~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~---r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 150 VTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSG---RRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcC---CCEEEEecCHHHHHHHHHHHHH
Confidence 455566665545678899999999999999887654 4799999999999999988875
|
|
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.00067 Score=64.30 Aligned_cols=41 Identities=32% Similarity=0.434 Sum_probs=34.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+.++||+|+|.|-++..++-.+ .+|+|.|.|..|....++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 46799999999999999998554 479999999999877654
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.018 Score=58.22 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=64.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cC-CCc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NY-KKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~-~~~ 470 (570)
+.++...+|.--|-|..+..+...++...+++|+|-||.+++.|++.+.. ++.++.++++++.+... .. .++
T Consensus 21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~----~~~r~~~v~~~F~~l~~~l~~~~i~~ 96 (314)
T COG0275 21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE----FDGRVTLVHGNFANLAEALKELGIGK 96 (314)
T ss_pred cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc----cCCcEEEEeCcHHHHHHHHHhcCCCc
Confidence 45678999999999999999999887678899999999999999999875 56789999998754221 11 257
Q ss_pred eeEEEEC
Q psy2395 471 FNIIVAN 477 (570)
Q Consensus 471 fD~Iv~N 477 (570)
+|.|+.+
T Consensus 97 vDGiL~D 103 (314)
T COG0275 97 VDGILLD 103 (314)
T ss_pred eeEEEEe
Confidence 8888774
|
|
| >PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0052 Score=53.15 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=43.6
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------CHHHHHHH
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------QSNLVRKL 543 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~l~~l 543 (570)
+||+||.||||........... ......+.|.-|++.+.++| +|.+.+++|.. ....+++.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~-----------~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~ 68 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKK-----------KKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKF 68 (106)
T ss_pred CcCEEEECCCChhhccccchhh-----------cccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHH
Confidence 5999999999986543211100 00114567889999999888 99998887652 34566777
Q ss_pred HHHC
Q psy2395 544 LFKY 547 (570)
Q Consensus 544 l~~~ 547 (570)
+...
T Consensus 69 l~~~ 72 (106)
T PF07669_consen 69 LLNN 72 (106)
T ss_pred HhcC
Confidence 6543
|
The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification |
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.034 Score=52.17 Aligned_cols=138 Identities=17% Similarity=0.186 Sum_probs=80.4
Q ss_pred ECCcccHHHHHHHHhcCCCcEEEEEeCCH--HHHHH---HHHHHHhhcccCCCCEEE-EEccccccccc---CCCceeEE
Q psy2395 404 MGTGSGAIAIAIAIYSKNKIEIIATDISK--FALKI---AKKNAKKKLTKYNIPIKF-IKSNWYNNLQN---YKKLFNII 474 (570)
Q Consensus 404 lGcGtG~i~l~la~~~~~~~~V~gvDis~--~al~~---A~~n~~~~~~~~~~~v~~-~~~D~~~~l~~---~~~~fD~I 474 (570)
+|=|.=.++.+|++......+++|+-.+. +..+. +..|+... ....+.+ ..-|+.+.... ...+||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L---~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL---RELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH---hhcCCccccCCCCCcccccccccCCcCCEE
Confidence 44455556677777654345666655444 33332 33555542 1112332 33455442222 23789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH---HHHHHHHHHCCCee
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS---NLVRKLLFKYGFSD 551 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~l~~ll~~~Gf~~ 551 (570)
+.|-|......... ...++ ..-.++..|+..+..+|+++|.+.+.+...+. =.+.++..+.||..
T Consensus 80 iFNFPH~G~~~~~~-~~~i~-----------~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l 147 (166)
T PF10354_consen 80 IFNFPHVGGGSEDG-KRNIR-----------LNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVL 147 (166)
T ss_pred EEeCCCCCCCccch-hHHHH-----------HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEE
Confidence 99998764110000 00000 01246789999999999999999997755443 35778888899988
Q ss_pred EEEEe
Q psy2395 552 IKSWR 556 (570)
Q Consensus 552 i~~~~ 556 (570)
++..+
T Consensus 148 ~~~~~ 152 (166)
T PF10354_consen 148 VRKVP 152 (166)
T ss_pred EEEec
Confidence 76653
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.018 Score=51.28 Aligned_cols=94 Identities=14% Similarity=0.187 Sum_probs=62.9
Q ss_pred CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
..+++..||+.+.++.....||+|+.++ |.|..... + .-..+++.+.++++|||.+.
T Consensus 31 v~L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPe-----------l----------Ws~e~~~~l~~~~~~~~~l~- 87 (124)
T PF05430_consen 31 VTLTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPE-----------L----------WSEELFKKLARLSKPGGTLA- 87 (124)
T ss_dssp EEEEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGG-----------G----------SSHHHHHHHHHHEEEEEEEE-
T ss_pred EEEEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcc-----------c----------CCHHHHHHHHHHhCCCcEEE-
Confidence 3578899999887776668999999985 44433221 0 01578888999999999875
Q ss_pred EEcCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 531 EHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 531 ~~~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
.+.....+++.|.++||.+ +..+-..++.-+++|.++
T Consensus 88 --Tys~a~~Vr~~L~~aGF~v-~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 88 --TYSSAGAVRRALQQAGFEV-EKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp --ES--BHHHHHHHHHCTEEE-EEEE-STTSSEEEEEEC-
T ss_pred --EeechHHHHHHHHHcCCEE-EEcCCCCCcchheEEEcC
Confidence 3455677999999999985 566677777777777653
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0094 Score=57.47 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=62.2
Q ss_pred CCCEEEEECCcccHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-----C-
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIY---SKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-----Y- 467 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-----~- 467 (570)
++..|+++|.=.|.-++.+|.. ....++|+||||+............ ....+|++++||..+.... .
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~h----p~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESH----PMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG--------TTEEEEES-SSSTHHHHTSGSS-
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhc----cccCceEEEECCCCCHHHHHHHHHhh
Confidence 5789999999999888877643 2236899999997655433322211 1345799999998653211 0
Q ss_pred -CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--------------
Q psy2395 468 -KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-------------- 532 (570)
Q Consensus 468 -~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-------------- 532 (570)
.....+|+.+-- .-.+.....++....++++|++++++-
T Consensus 108 ~~~~~vlVilDs~--------------------------H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~ 161 (206)
T PF04989_consen 108 SPPHPVLVILDSS--------------------------HTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDR 161 (206)
T ss_dssp ---SSEEEEESS------------------------------SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS-----
T ss_pred ccCCceEEEECCC--------------------------ccHHHHHHHHHHhCccCCCCCEEEEEecccccccccccccc
Confidence 122335554321 111233455666778999999998741
Q ss_pred ----cCCCHHHHHHHHHHCC
Q psy2395 533 ----GYNQSNLVRKLLFKYG 548 (570)
Q Consensus 533 ----~~~~~~~l~~ll~~~G 548 (570)
|.+....+.++|.++.
T Consensus 162 ~w~~g~~p~~av~~fL~~~~ 181 (206)
T PF04989_consen 162 PWGPGNNPKTAVKEFLAEHP 181 (206)
T ss_dssp --------HHHHHHHHHTTT
T ss_pred chhhhhHHHHHHHHHHHHCC
Confidence 1234567888888765
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.016 Score=61.09 Aligned_cols=105 Identities=19% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++..++|+|||.|.....++... .+.++|+|+++..+..+......... .....++.+|+... +..+..||.+-
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l--~~k~~~~~~~~~~~-~fedn~fd~v~ 183 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYL--DNKCNFVVADFGKM-PFEDNTFDGVR 183 (364)
T ss_pred cccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHh--hhhcceehhhhhcC-CCCccccCcEE
Confidence 356689999999999999998765 57899999999888887765554322 22344577887654 33357899988
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+. ....|.| ....+++++++.++|||.++.
T Consensus 184 ~l-------------d~~~~~~------------~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 184 FL-------------EVVCHAP------------DLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred EE-------------eecccCC------------cHHHHHHHHhcccCCCceEEe
Confidence 72 1111222 346778888889999999875
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0058 Score=65.29 Aligned_cols=106 Identities=19% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD 472 (570)
.++.+|||.-|+||.-++..|++.+...+|++.|.++.+++..++|++.|+ ....+....+|+....- .....||
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~--v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNG--VEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcC--chhhcccccchHHHHHHhccccccccc
Confidence 457799999999999999999998877789999999999999999999752 23347777788743221 1126899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+|=.+| |... ..|+..+.+.++.||.+.+..
T Consensus 186 vIDLDP-yGs~----------------------------s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 186 VIDLDP-YGSP----------------------------SPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred eEecCC-CCCc----------------------------cHHHHHHHHHhhcCCEEEEEe
Confidence 999875 4422 356777777899999998854
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.015 Score=62.64 Aligned_cols=137 Identities=12% Similarity=0.220 Sum_probs=86.6
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
.|+|..+|.|.++.+|...--=-.+|+-+ ..+..+... ...| .--..-|+.+.++..+..||+|-++--
T Consensus 368 NVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vI----ydRG------LIG~yhDWCE~fsTYPRTYDLlHA~~l 436 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVI----YDRG------LIGVYHDWCEAFSTYPRTYDLLHADGL 436 (506)
T ss_pred eeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhh----hhcc------cchhccchhhccCCCCcchhheehhhh
Confidence 69999999999999997431000122222 122222211 1111 112344677777666789999999754
Q ss_pred CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEEecC-
Q psy2395 480 YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDL- 558 (570)
Q Consensus 480 y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~~D~- 558 (570)
|... ...-.+..++-++-|.|+|+|++++--...-..+++.++....|.......+-
T Consensus 437 fs~~----------------------~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW~~~~~d~e~g 494 (506)
T PF03141_consen 437 FSLY----------------------KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRWEVRIHDTEDG 494 (506)
T ss_pred hhhh----------------------cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcceEEEEecCCC
Confidence 3211 11123578888999999999999987666778889999999888764332222
Q ss_pred -CCCceEEEEEe
Q psy2395 559 -SGIERVTQGKI 569 (570)
Q Consensus 559 -~g~~R~~~~~~ 569 (570)
.+.++++++++
T Consensus 495 ~~~~EkiL~~~K 506 (506)
T PF03141_consen 495 PDGPEKILICQK 506 (506)
T ss_pred CCCCceEEEEEC
Confidence 34788888864
|
; GO: 0008168 methyltransferase activity |
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.091 Score=52.24 Aligned_cols=112 Identities=26% Similarity=0.373 Sum_probs=66.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---cCCCCEEEEEcccccccc--cCCCc-
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNIPIKFIKSNWYNNLQ--NYKKL- 470 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---~~~~~v~~~~~D~~~~l~--~~~~~- 470 (570)
...+||++|+|||..++.+|... .++|.-.|+.. .+...+.|...+.. ..+..+.+..-++-+... .....
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNP 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHh--cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCc
Confidence 35689999999999999998866 47898888744 44444444333211 122244444444433221 11133
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
||+|++-=++ |+|+ .+..++..+..+|..+|.+++.+.-..
T Consensus 163 ~DlilasDvv--------------y~~~-----------~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793|consen 163 FDLILASDVV--------------YEEE-----------SFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred ccEEEEeeee--------------ecCC-----------cchhHHHHHHHHHhcCCeEEEEEeccc
Confidence 8999873222 2221 235666677778888887777665443
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.011 Score=60.64 Aligned_cols=78 Identities=24% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc---cccC--CC
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN---LQNY--KK 469 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~---l~~~--~~ 469 (570)
..++..++|.-.|.|..+..++...++ ++++|+|.||.+++.|++++.. ...++.++.+++.+. +... ..
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~----~~~r~~~~~~~F~~l~~~l~~~~~~~ 92 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK----FDDRFIFIHGNFSNLDEYLKELNGIN 92 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC----CCTTEEEEES-GGGHHHHHHHTTTTS
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh----ccceEEEEeccHHHHHHHHHHccCCC
Confidence 356779999999999999999998875 9999999999999999988764 466899999998552 1211 25
Q ss_pred ceeEEEEC
Q psy2395 470 LFNIIVAN 477 (570)
Q Consensus 470 ~fD~Iv~N 477 (570)
++|.|+.+
T Consensus 93 ~~dgiL~D 100 (310)
T PF01795_consen 93 KVDGILFD 100 (310)
T ss_dssp -EEEEEEE
T ss_pred ccCEEEEc
Confidence 79999984
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.082 Score=53.64 Aligned_cols=37 Identities=30% Similarity=0.412 Sum_probs=29.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKI 437 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~ 437 (570)
+.+||-.|||.|.++..||..+. .+-|-|.|--|+-.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~ 187 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLIC 187 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHH
Confidence 56899999999999999998864 46666777766543
|
|
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.19 Score=52.17 Aligned_cols=142 Identities=18% Similarity=0.149 Sum_probs=82.0
Q ss_pred EEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCC
Q psy2395 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480 (570)
Q Consensus 401 VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy 480 (570)
|+|++||.|.+++.+...+ ---+.++|+++.+++.-+.|... .++.+|+.+.....-..+|+++.-||-
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~---------~~~~~Di~~~~~~~~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN---------KVPFGDITKISPSDIPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC---------CCCccChhhhhhhhCCCcCEEEecCCC
Confidence 6899999999999987654 23467899999999998888641 345677755332112468999999985
Q ss_pred CCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------CCHHHHHHHHHHCCCeeE
Q psy2395 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 481 ~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------~~~~~l~~ll~~~Gf~~i 552 (570)
-..+...... . ..+++. ..+..+++.+ +.++|. ++++|--. .....+...|+..||...
T Consensus 70 q~fS~ag~~~-~-~~d~r~---------~L~~~~~r~i-~~~~P~-~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~ 136 (315)
T TIGR00675 70 QPFSIAGKRK-G-FEDTRG---------TLFFEIVRIL-KEKKPK-FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVY 136 (315)
T ss_pred cccchhcccC-C-CCCchh---------hHHHHHHHHH-hhcCCC-EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEE
Confidence 4322110000 0 001111 1233444333 346775 44554211 124556777888999763
Q ss_pred EEEe---c---CCCCceEEE
Q psy2395 553 KSWR---D---LSGIERVTQ 566 (570)
Q Consensus 553 ~~~~---D---~~g~~R~~~ 566 (570)
...- | -+.++|+++
T Consensus 137 ~~~l~a~dyGvPQ~R~R~f~ 156 (315)
T TIGR00675 137 YKVLNAKDFGVPQNRERIYI 156 (315)
T ss_pred EEEEcHHHCCCCCCccEEEE
Confidence 3222 2 256677754
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.025 Score=56.75 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=76.4
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
++..+.|-|....+++.. +.+..++|+|||.|-....- | .+.++|.|++...+..|++.- .
T Consensus 26 s~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~~~----p-~~~~ig~D~c~~l~~~ak~~~---------~ 86 (293)
T KOG1331|consen 26 SATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLGVN----P-LCLIIGCDLCTGLLGGAKRSG---------G 86 (293)
T ss_pred cccccCccHHHHHHHhcc-----CCcceeeecccCCcccCcCC----C-cceeeecchhhhhccccccCC---------C
Confidence 555666666666555443 34789999999999654321 3 468999999999988876421 1
Q ss_pred EEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 453 IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 453 v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.....+|+.+ ++....+||.+++-.- ..+-.--.--..++++..+.|+|||...+.
T Consensus 87 ~~~~~ad~l~-~p~~~~s~d~~lsiav----------------------ihhlsT~~RR~~~l~e~~r~lrpgg~~lvy 142 (293)
T KOG1331|consen 87 DNVCRADALK-LPFREESFDAALSIAV----------------------IHHLSTRERRERALEELLRVLRPGGNALVY 142 (293)
T ss_pred ceeehhhhhc-CCCCCCccccchhhhh----------------------hhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence 2577788866 4444578999887211 000000112257889999999999987653
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.012 Score=61.79 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=66.0
Q ss_pred eeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy2395 368 LVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT 447 (570)
Q Consensus 368 ~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~ 447 (570)
..+.++..++-+|-.++. +.+.. ..+++..|.|++||.|-+++.+++.+ ++|++-|.+|+++++.+.|+..|-
T Consensus 223 Fk~DfskVYWnsRL~~Eh--erlsg-~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNk- 295 (495)
T KOG2078|consen 223 FKFDFSKVYWNSRLSHEH--ERLSG-LFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNK- 295 (495)
T ss_pred EEEecceEEeeccchhHH--HHHhh-ccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccc-
Confidence 445556667777644432 11222 35678899999999999999999654 899999999999999999998752
Q ss_pred cCCC-CEEEEEccccccc
Q psy2395 448 KYNI-PIKFIKSNWYNNL 464 (570)
Q Consensus 448 ~~~~-~v~~~~~D~~~~l 464 (570)
... ++..+..|+...+
T Consensus 296 -v~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 296 -VDPSAIEIFNMDAKDFL 312 (495)
T ss_pred -cchhheeeecccHHHHh
Confidence 222 4888888886655
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.19 Score=47.72 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=80.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHH----HHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKF----ALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~----al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
+++.+|+|+-.|.|+++..++....+...|+++=-.+. .....+.+..... ....+++.+-.+..... .....
T Consensus 47 kpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e-~~~aN~e~~~~~~~A~~--~pq~~ 123 (238)
T COG4798 47 KPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE-PVYANVEVIGKPLVALG--APQKL 123 (238)
T ss_pred CCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh-hhhhhhhhhCCcccccC--CCCcc
Confidence 57889999999999999999876655668887643322 1111222221100 01113455555554433 23578
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-C--------------CC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-Y--------------NQ 536 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~--------------~~ 536 (570)
|+++.|--|+... ...+. -....++...+++.|||||.+.++-. . -.
T Consensus 124 d~~~~~~~yhdmh--------------~k~i~----~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~ 185 (238)
T COG4798 124 DLVPTAQNYHDMH--------------NKNIH----PATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRID 185 (238)
T ss_pred cccccchhhhhhh--------------ccccC----cchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccC
Confidence 8888776665321 11111 12346788888899999999877431 1 12
Q ss_pred HHHHHHHHHHCCCeeE
Q psy2395 537 SNLVRKLLFKYGFSDI 552 (570)
Q Consensus 537 ~~~l~~ll~~~Gf~~i 552 (570)
...+.......||...
T Consensus 186 ~a~V~a~veaaGFkl~ 201 (238)
T COG4798 186 PAVVIAEVEAAGFKLE 201 (238)
T ss_pred hHHHHHHHHhhcceee
Confidence 3556777778898754
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.023 Score=55.26 Aligned_cols=77 Identities=19% Similarity=0.266 Sum_probs=42.8
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHH--HHHHHHHHCC
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSN--LVRKLLFKYG 548 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~l~~ll~~~G 548 (570)
.|+|+++|||....... ....+.. .....+-++.+..++.++.++|+|||.+++-++..... ....++...|
T Consensus 1 VdliitDPPY~~~~~~~---~~~~~~~---~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYN---NYFDYGD---NKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG 74 (231)
T ss_dssp EEEEEE---TSSSCS--------CSCH---CCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCcc---hhhhccC---CCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh
Confidence 59999999998654310 0000000 00011224567889999999999999999988876655 3444455557
Q ss_pred -CeeEE
Q psy2395 549 -FSDIK 553 (570)
Q Consensus 549 -f~~i~ 553 (570)
|....
T Consensus 75 ~~~~~~ 80 (231)
T PF01555_consen 75 GFFLRN 80 (231)
T ss_dssp T-EEEE
T ss_pred hhheec
Confidence 76543
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.082 Score=46.63 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=42.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
.+.+|+|+|++.|.-++.++..+ ...|++++.++...+..++|++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhh
Confidence 57899999999999999999887 469999999999999999999863
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.05 Score=49.16 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=58.5
Q ss_pred HHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 384 ELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 384 ~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
-.-++.++..+. .+..+.+|+|+|-|.+-+..++.+ -...+|+|++|-.+.+++-.+.+.+ ...+..|..-|+++
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g--~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAG--CAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHh--cccchhhhhhhhhh
Confidence 333444555544 345799999999999999999876 2468999999999999998887653 45568888888876
Q ss_pred cc
Q psy2395 463 NL 464 (570)
Q Consensus 463 ~l 464 (570)
..
T Consensus 134 ~d 135 (199)
T KOG4058|consen 134 VD 135 (199)
T ss_pred cc
Confidence 43
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.18 Score=54.25 Aligned_cols=110 Identities=16% Similarity=0.259 Sum_probs=73.9
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+++-+|||.--+...+-+-+ -..|+.+|+|+-+++.....-.. ......+...|+.. +...+++||+|+.-+
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~----~~~~~~~~~~d~~~-l~fedESFdiVIdkG 122 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK----ERPEMQMVEMDMDQ-LVFEDESFDIVIDKG 122 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc----CCcceEEEEecchh-ccCCCcceeEEEecC
Confidence 389999999999988887665 35799999999999877543211 23347889999854 444568999999843
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
-... .+++..++.. .......+.++.+.|++||+.+.
T Consensus 123 tlDa-----------l~~de~a~~~----~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 123 TLDA-----------LFEDEDALLN----TAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cccc-----------ccCCchhhhh----hHHhhHHHhhHHHHhccCCEEEE
Confidence 2210 0111111110 02445677888999999999754
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.046 Score=56.51 Aligned_cols=131 Identities=15% Similarity=0.083 Sum_probs=77.0
Q ss_pred EEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC-ceeEEEECC
Q psy2395 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK-LFNIIVANP 478 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~-~fD~Iv~NP 478 (570)
+++|++||.|.+.+.+...+ --.+.++|+++.+++.-+.|.. ....+|+.+.....-. .+|+++.-|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~----------~~~~~Di~~~~~~~l~~~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP----------EVICGDITEIDPSDLPKDVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT----------EEEESHGGGCHHHHHHHT-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc----------ccccccccccccccccccceEEEecc
Confidence 78999999999999998766 3468999999999999888863 5788888664321102 599999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC-C------CHHHHHHHHHHCCCe
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY-N------QSNLVRKLLFKYGFS 550 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~-~------~~~~l~~ll~~~Gf~ 550 (570)
|--+.+.... . ....+. .+ .++..+++.+. .++|.- +++|- +. . ....+.+.|.+.||.
T Consensus 70 PCQ~fS~ag~---~------~~~~d~-r~-~L~~~~~~~v~-~~~Pk~-~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~ 136 (335)
T PF00145_consen 70 PCQGFSIAGK---R------KGFDDP-RN-SLFFEFLRIVK-ELKPKY-FLLENVPGLLSSKNGEVFKEILEELEELGYN 136 (335)
T ss_dssp --TTTSTTST---H------HCCCCH-TT-SHHHHHHHHHH-HHS-SE-EEEEEEGGGGTGGGHHHHHHHHHHHHHTTEE
T ss_pred CCceEecccc---c------cccccc-cc-hhhHHHHHHHh-hccceE-EEecccceeecccccccccccccccccccee
Confidence 8543221100 0 000000 11 23445555443 467854 55543 21 1 146677788889987
Q ss_pred eEEEE
Q psy2395 551 DIKSW 555 (570)
Q Consensus 551 ~i~~~ 555 (570)
+....
T Consensus 137 v~~~v 141 (335)
T PF00145_consen 137 VQWRV 141 (335)
T ss_dssp EEEEE
T ss_pred ehhcc
Confidence 64433
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.06 Score=54.19 Aligned_cols=114 Identities=17% Similarity=0.236 Sum_probs=83.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC-CCCEEEEEcccccccccC-CCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY-NIPIKFIKSNWYNNLQNY-KKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~-~~~v~~~~~D~~~~l~~~-~~~fD~ 473 (570)
.+++++|-+|-|-|......+++ +.-..+.-+|++...++..++.......+. +.++.+..||.+..+... .++||+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 46779999999999998888766 445679999999999999998877642222 347999999988766544 479999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+.+- +++ + -|-. --+.+.++..+.+.||++|+++..
T Consensus 199 ii~ds-----sdp-----v---gpa~--------~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 199 IITDS-----SDP-----V---GPAC--------ALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred EEEec-----CCc-----c---chHH--------HHHHHHHHHHHHHhhCCCcEEEEe
Confidence 99842 110 0 0101 124567888899999999998764
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.18 Score=52.43 Aligned_cols=90 Identities=22% Similarity=0.277 Sum_probs=62.2
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE---cccccccccCCCc
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK---SNWYNNLQNYKKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~---~D~~~~l~~~~~~ 470 (570)
..++.+|+=.|+| .|.+++.+|+.. +++|+++|.+++-++.|++--.. .++. .|..+.+. +.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~lGAd---------~~i~~~~~~~~~~~~---~~ 229 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKLGAD---------HVINSSDSDALEAVK---EI 229 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHhCCc---------EEEEcCCchhhHHhH---hh
Confidence 3567888888877 667888888866 48999999999999999876331 2333 23322222 34
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
||+|+..-| ..-+..+.+.|+++|.+++
T Consensus 230 ~d~ii~tv~--------------------------------~~~~~~~l~~l~~~G~~v~ 257 (339)
T COG1064 230 ADAIIDTVG--------------------------------PATLEPSLKALRRGGTLVL 257 (339)
T ss_pred CcEEEECCC--------------------------------hhhHHHHHHHHhcCCEEEE
Confidence 999998432 1234456668999999876
|
|
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.2 Score=48.97 Aligned_cols=108 Identities=17% Similarity=0.123 Sum_probs=72.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc--CCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--YKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD 472 (570)
.+++.+||=||+++|..-...+.-..+..-||+||.|+.+=...-.-++ ...+|-.+.-|+..+-.. .-.-.|
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk-----kRtNiiPIiEDArhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK-----KRTNIIPIIEDARHPAKYRMLVGMVD 228 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh-----ccCCceeeeccCCCchheeeeeeeEE
Confidence 3678999999999998877766555456789999999865443322222 233577777888553221 114689
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+|+++-|-- +..+.+.-++..+|++||.+++.+..
T Consensus 229 vIFaDvaqp---------------------------dq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 229 VIFADVAQP---------------------------DQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred EEeccCCCc---------------------------hhhhhhhhhhhhhhccCCeEEEEEec
Confidence 999974311 12244555788899999999986643
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.23 Score=54.31 Aligned_cols=78 Identities=13% Similarity=0.159 Sum_probs=53.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc------------
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ------------ 465 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~------------ 465 (570)
..+++|++||.|.+.+.+-..+ .-.|.++|+++.+.+.-+.|... ......+.+|+.+...
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRTYKANWYC-----DPATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHHHHHHcCC-----CCccceeccChhhCccccccccchhhhh
Confidence 4699999999999999987654 34678999999999888888531 1123344555543211
Q ss_pred ----cCCCceeEEEECCCCCC
Q psy2395 466 ----NYKKLFNIIVANPPYIP 482 (570)
Q Consensus 466 ----~~~~~fD~Iv~NPPy~~ 482 (570)
.....+|+++.-||--+
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~ 181 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQP 181 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCc
Confidence 00135899999998544
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.1 Score=55.08 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=45.1
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
..-|||+|+|||.+++.+++.+. -.|+|+|.-..|.+.|++-..+|+ ...+++++
T Consensus 67 kv~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng--~SdkI~vI 121 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNG--MSDKINVI 121 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCC--Cccceeee
Confidence 34699999999999999998874 479999999999999999998875 23344444
|
|
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.25 Score=48.07 Aligned_cols=131 Identities=11% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCEEEEECCcccHHHHHHHHhcCC--------CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc------
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKN--------KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN------ 463 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~--------~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~------ 463 (570)
-.+++|+|+-.|.++..|++..-. ...|++||+.+-+ .-..|..+++|+...
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma--------------PI~GV~qlq~DIT~~stae~I 107 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA--------------PIEGVIQLQGDITSASTAEAI 107 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC--------------ccCceEEeecccCCHhHHHHH
Confidence 458999999999999999876411 1239999997643 122377889998653
Q ss_pred cccCC-CceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCCCHHHH
Q psy2395 464 LQNYK-KLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYNQSNLV 540 (570)
Q Consensus 464 l~~~~-~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~~~~~l 540 (570)
+..+. ++.|+|||+. |=+.. .|.+.+-+ ....+...+.-+..+|+|||.|+- ++.......+
T Consensus 108 i~hfggekAdlVvcDGAPDvTG--lHd~DEy~-------------Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslL 172 (294)
T KOG1099|consen 108 IEHFGGEKADLVVCDGAPDVTG--LHDLDEYV-------------QAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLL 172 (294)
T ss_pred HHHhCCCCccEEEeCCCCCccc--cccHHHHH-------------HHHHHHHHHHHHhheecCCCeeehhhhccCchHHH
Confidence 22223 5899999973 21100 00000000 012344566667789999999976 3334444434
Q ss_pred HHHHHHCCCeeEEEEecC
Q psy2395 541 RKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 541 ~~ll~~~Gf~~i~~~~D~ 558 (570)
..-|+.. |..+.+.+-.
T Consensus 173 ysql~~f-f~kv~~~KPr 189 (294)
T KOG1099|consen 173 YSQLRKF-FKKVTCAKPR 189 (294)
T ss_pred HHHHHHH-hhceeeecCC
Confidence 3333332 4444444433
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.13 Score=55.50 Aligned_cols=104 Identities=19% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCEEEEECCcccHHHHHH---HHhcCCCcEEEEEeCCHHHHHHHHH-HHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 398 KIKLLEMGTGSGAIAIAI---AIYSKNKIEIIATDISKFALKIAKK-NAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~l---a~~~~~~~~V~gvDis~~al~~A~~-n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
...|+-+|+|-|-+.-.. |.......++++||.+|.|+-..+. |... -+.+|+++.+|+.+.. .+..+.|+
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~----W~~~Vtii~~DMR~w~-ap~eq~DI 442 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFEC----WDNRVTIISSDMRKWN-APREQADI 442 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhh----hcCeeEEEeccccccC-Cchhhccc
Confidence 447899999999885443 3444446889999999999876543 4433 3557999999996643 32478999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
+|+- |.|.-+.-+.-.+.+..+.++|||+|+.+
T Consensus 443 ~VSE-----------------------LLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 443 IVSE-----------------------LLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred hHHH-----------------------hhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 9982 11111111222567778888999998664
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.044 Score=55.17 Aligned_cols=74 Identities=8% Similarity=0.104 Sum_probs=53.8
Q ss_pred CCCEEEEECCcccHHHH-HHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAI-AIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l-~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..|+|+.+|-|++++ .+...+ ...|+|+|.+|.+++..++|++.|. ...+..+..||-... .+....|-|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag--Ak~V~A~EwNp~svEaLrR~~~~N~--V~~r~~i~~gd~R~~--~~~~~AdrVn 267 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG--AKTVFACEWNPWSVEALRRNAEANN--VMDRCRITEGDNRNP--KPRLRADRVN 267 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC--ccEEEEEecCHHHHHHHHHHHHhcc--hHHHHHhhhcccccc--Cccccchhee
Confidence 45789999999999999 555544 5789999999999999999999862 122455566665432 2235666665
Q ss_pred E
Q psy2395 476 A 476 (570)
Q Consensus 476 ~ 476 (570)
.
T Consensus 268 L 268 (351)
T KOG1227|consen 268 L 268 (351)
T ss_pred e
Confidence 5
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.15 Score=53.34 Aligned_cols=147 Identities=18% Similarity=0.178 Sum_probs=87.9
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CC-ceeEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KK-LFNIIV 475 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~-~fD~Iv 475 (570)
..+++|++||.|.+.+.+...+ ---+.++|+++.+++.-+.|... ..+...|+.+..... .. .+|+|+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~--------~~~~~~di~~~~~~~~~~~~~Dvli 72 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH--------GDIILGDIKELDGEALRKSDVDVLI 72 (328)
T ss_pred CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC--------CceeechHhhcChhhccccCCCEEE
Confidence 4589999999999998888765 24678999999999998888752 346667775433221 12 799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------CCHHHHHHHHHHCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-------NQSNLVRKLLFKYG 548 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-------~~~~~l~~ll~~~G 548 (570)
.-||--+.+..- .....-+|+..| +..+++ +...++| -++++|--. ...+.+.+.|++.|
T Consensus 73 gGpPCQ~FS~aG--~r~~~~D~R~~L---------~~~~~r-~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~G 139 (328)
T COG0270 73 GGPPCQDFSIAG--KRRGYDDPRGSL---------FLEFIR-LIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELG 139 (328)
T ss_pred eCCCCcchhhcC--cccCCcCcccee---------eHHHHH-HHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHHcC
Confidence 999854322110 000011222222 122222 3336777 555664211 24567888899999
Q ss_pred CeeE-EEE--ecC---CCCceEEEE
Q psy2395 549 FSDI-KSW--RDL---SGIERVTQG 567 (570)
Q Consensus 549 f~~i-~~~--~D~---~g~~R~~~~ 567 (570)
|..- .+. .|+ +.+.|+++-
T Consensus 140 Y~~~~~ilna~dyGvPQ~ReRvfii 164 (328)
T COG0270 140 YGVEFNILNAADYGVPQSRERVFIV 164 (328)
T ss_pred CcchHheeeHHhcCCCCCccEEEEE
Confidence 9621 122 222 556676653
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.15 Score=43.75 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=26.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCC
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDIS 431 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis 431 (570)
+....+|+|||+|.+.-.|...+ ..-+|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEG---YPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCC---CCccccccc
Confidence 45689999999999998888765 567899964
|
; GO: 0008168 methyltransferase activity |
| >KOG3350|consensus | Back alignment and domain information |
|---|
Probab=92.14 E-value=3.6 Score=38.58 Aligned_cols=166 Identities=14% Similarity=0.126 Sum_probs=88.6
Q ss_pred hchHHHHHHHHHHHHHHhcC----CCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCccc
Q psy2395 334 KLHKQEINILNKLIQRRILG----EPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSG 409 (570)
Q Consensus 334 ~l~~~~~~~~~~~~~~r~~~----~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG 409 (570)
.|+...++.++.+...+.+. .+..++.+ -.+..+..+.- +..+..++.+++..+.. ...+.+|.-+.|-|=
T Consensus 11 ~LsA~aLAaL~eF~aEq~k~~e~~~~~~~~i~---~~~eDwQlsqf-wy~~eta~~La~e~v~~-s~e~~rIacvS~Psl 85 (217)
T KOG3350|consen 11 QLSADALAALNEFLAEQQKRIEEEENQSDIIE---KIGEDWQLSQF-WYSDETARKLAAERVEA-SGEGSRIACVSCPSL 85 (217)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhccCchhhhhh---hcccchhhhhh-hcCHHHHHHHHHHHHhh-cccCceEEEEeCchH
Confidence 46777788888887776543 22222222 11222222221 11223445555555443 235567888888775
Q ss_pred HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC---CCceeEEEECCCCCCCCCc
Q psy2395 410 AIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDI 486 (570)
Q Consensus 410 ~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~ 486 (570)
++-.-.-....+.-+|+-.+.+...-.. + -+|+.-|...++..+ ...||+||++|||...+
T Consensus 86 y~y~k~re~~~~~~~v~lfEfDkRFe~y------------g--~eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~e-- 149 (217)
T KOG3350|consen 86 YVYQKKREIEIPHDQVYLFEFDKRFELY------------G--TEFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEE-- 149 (217)
T ss_pred HhhhhhhhccCCceeEEEEEehhhHHhc------------c--ceeEEeccCCCCCCHHHHHhcccEEEeCCccccch--
Confidence 5221111111125688998887654222 2 345656654443322 26899999999998532
Q ss_pred ccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHH
Q psy2395 487 HLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKL 543 (570)
Q Consensus 487 ~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~l 543 (570)
.+.+--..+..+++++-.+++.+|.--.+.+.++
T Consensus 150 -----------------------Cl~Kts~tik~L~r~~~kvilCtGeimee~~s~~ 183 (217)
T KOG3350|consen 150 -----------------------CLAKTSETIKRLQRNQKKVILCTGEIMEEWASAL 183 (217)
T ss_pred -----------------------hhhhhHHHHHHHhcCCceEEEechhHhHHHHHHH
Confidence 2234444555667777778777765444433333
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.93 E-value=4 Score=40.42 Aligned_cols=138 Identities=10% Similarity=0.116 Sum_probs=82.8
Q ss_pred CCccccchhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcC---CCcEEEEEeCCHHHHHHHHHHHHhhcccC
Q psy2395 374 SDVLIPRPETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSK---NKIEIIATDISKFALKIAKKNAKKKLTKY 449 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~---~~~~V~gvDis~~al~~A~~n~~~~~~~~ 449 (570)
|.++-.|.++..+...+.+.. ...+...+|+|+|+..-+..|...+. ...+.+.+|+|...+....+-+... -.
T Consensus 54 PEYYpTRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~ 131 (321)
T COG4301 54 PEYYPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YP 131 (321)
T ss_pred ccccCchhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CC
Confidence 555655667766655544331 23467899999999877766654432 1368999999999887655544332 14
Q ss_pred CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 450 NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 450 ~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
+..+.-+++|....+..+.+.---+++=| .+.. -.+.| +.-..|+..+...|.||-++.
T Consensus 132 ~l~v~~l~~~~~~~La~~~~~~~Rl~~fl----GStl------GN~tp-----------~e~~~Fl~~l~~a~~pGd~~L 190 (321)
T COG4301 132 GLEVNALCGDYELALAELPRGGRRLFVFL----GSTL------GNLTP-----------GECAVFLTQLRGALRPGDYFL 190 (321)
T ss_pred CCeEeehhhhHHHHHhcccCCCeEEEEEe----cccc------cCCCh-----------HHHHHHHHHHHhcCCCcceEE
Confidence 55678888998665543322112222200 0000 00111 223578888999999999999
Q ss_pred EEEcC
Q psy2395 530 IEHGY 534 (570)
Q Consensus 530 ~~~~~ 534 (570)
+.+..
T Consensus 191 lGvDl 195 (321)
T COG4301 191 LGVDL 195 (321)
T ss_pred Eeccc
Confidence 86644
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.66 E-value=3.3 Score=40.98 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=80.8
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCceeEEEECC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLFNIIVANP 478 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD~Iv~NP 478 (570)
|...|||=-++..+.+. .-++.++|+.|+=....+.|+. .+.++.+.++|-+..+. .+.++=-+|+.+|
T Consensus 93 l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~-----~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDP 164 (279)
T COG2961 93 LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFA-----GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDP 164 (279)
T ss_pred cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhC-----CCcceEEEecCcHHHHhhhCCCCCcceEEEeCC
Confidence 89999999988888754 3589999999999999999987 36689999999876432 2235678999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc--cCeEEEEEEcCCCHHHH---HHHHHHCCCe
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV--KNGLLLIEHGYNQSNLV---RKLLFKYGFS 550 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~l---~~ll~~~Gf~ 550 (570)
||-..+ .|..+++...+.++ ++|...+=.|--+...+ .+-++..|..
T Consensus 165 PfE~~~-------------------------eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L~~~~i~ 216 (279)
T COG2961 165 PFELKD-------------------------EYQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRALEALGIR 216 (279)
T ss_pred Cccccc-------------------------HHHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHHhhcCcc
Confidence 996433 34555555444444 56776665555444444 4445556664
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.7 Score=43.51 Aligned_cols=136 Identities=15% Similarity=0.175 Sum_probs=72.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhc----CCCcEEEEEeCCH--------------------------HHHHHHHHHHHhhc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS----KNKIEIIATDISK--------------------------FALKIAKKNAKKKL 446 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~----~~~~~V~gvDis~--------------------------~al~~A~~n~~~~~ 446 (570)
-+..|+|+||--|..++.++... ..+.++++.|-=. ..++..+.|+...+
T Consensus 74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g 153 (248)
T PF05711_consen 74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG 153 (248)
T ss_dssp S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence 35689999999998776654321 1245788888411 13444444544322
Q ss_pred ccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 447 TKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 447 ~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
. ...++.++.|.+.+.++.. ..++-++..+- |-.+.....++.++..|.||
T Consensus 154 l-~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~---------------------------DlYesT~~aLe~lyprl~~G 205 (248)
T PF05711_consen 154 L-LDDNVRFVKGWFPDTLPDAPIERIALLHLDC---------------------------DLYESTKDALEFLYPRLSPG 205 (248)
T ss_dssp T-SSTTEEEEES-HHHHCCC-TT--EEEEEE------------------------------SHHHHHHHHHHHGGGEEEE
T ss_pred C-CcccEEEECCcchhhhccCCCccEEEEEEec---------------------------cchHHHHHHHHHHHhhcCCC
Confidence 1 2347999999997766532 13344433321 22345678899999999999
Q ss_pred eEEEEEE-cC-CCHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 526 GLLLIEH-GY-NQSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 526 G~l~~~~-~~-~~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
|++++.- +. .....+.+++.+.|...--..-|..|
T Consensus 206 GiIi~DDY~~~gcr~AvdeF~~~~gi~~~l~~id~~~ 242 (248)
T PF05711_consen 206 GIIIFDDYGHPGCRKAVDEFRAEHGITDPLHPIDWTG 242 (248)
T ss_dssp EEEEESSTTTHHHHHHHHHHHHHTT--S--EE-SSS-
T ss_pred eEEEEeCCCChHHHHHHHHHHHHcCCCCccEEecCce
Confidence 9998732 22 22456777888888765323334443
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.89 E-value=1.2 Score=50.04 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=49.6
Q ss_pred CEEEEECCcccHHHHH---HHHhcCCCcEEEEEeCCHHHHHHHHHHHH---hhcc---cCCCCEEEEEccccccccc---
Q psy2395 399 IKLLEMGTGSGAIAIA---IAIYSKNKIEIIATDISKFALKIAKKNAK---KKLT---KYNIPIKFIKSNWYNNLQN--- 466 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~---la~~~~~~~~V~gvDis~~al~~A~~n~~---~~~~---~~~~~v~~~~~D~~~~l~~--- 466 (570)
..|+-+|+|-|-+--. .++...-..+|++||.||.++.....+.. .... ..+..|+++.+|+.+....
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 3689999999987433 33333335789999999776655544432 1110 0144699999999664221
Q ss_pred -------CCCceeEEEE
Q psy2395 467 -------YKKLFNIIVA 476 (570)
Q Consensus 467 -------~~~~fD~Iv~ 476 (570)
.-+++|+||+
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 0137899998
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.81 E-value=0.62 Score=47.61 Aligned_cols=99 Identities=16% Similarity=0.173 Sum_probs=62.8
Q ss_pred EEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccc---cCCChHH-HHHHHHHHhhccccCeE
Q psy2395 453 IKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTD---YSNGLSS-IKEIVKNASKYLVKNGL 527 (570)
Q Consensus 453 v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~---~~~gl~~-~~~~l~~~~~~LkpgG~ 527 (570)
..++++|+++.+... +.++|+|+++|||..............+.. +..+ ...-..+ ....+.+..+.|+++|.
T Consensus 17 ~~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~~ 94 (302)
T COG0863 17 SKIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLD--AWDGWDSRGIYLKFILLQWLAEQKRVLKPGGS 94 (302)
T ss_pred hheecchHHHHHhhccccceeEEEcCCCccccccccccccccccch--hhhhhhhHHHHHHHHHHHHHHHhhheecCCCE
Confidence 568888887655432 359999999999976533110000000000 0000 0001123 46778888999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 528 LLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 528 l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
+++..+......+...+++.||....
T Consensus 95 ~~v~~~~~~~~~~~~~~~~~gf~~~~ 120 (302)
T COG0863 95 LYVIDPFSNLARIEDIAKKLGFEILG 120 (302)
T ss_pred EEEECCchhhhHHHHHHHhCCCeEee
Confidence 99988887888888888889987643
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=89.75 E-value=2 Score=47.50 Aligned_cols=42 Identities=24% Similarity=0.180 Sum_probs=35.7
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.+|+=+||| .|..++..|+.. ++.|+++|.+++.++.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 57899999999 577777778776 4689999999999998876
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.78 Score=47.41 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=62.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~I 474 (570)
.+.+|||+|.|.|.-+.++-..+|.-..++-++.||..-++...-.... ......+..+|+....... ...|+++
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccCCCccceeehh
Confidence 4568999999999887777666664446777888886655554333311 1112233444443221111 2457766
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChH-HHHHHHHHHhhccccCeEEEEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLS-SIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~-~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+.---.. ++|.+ -+...++..+..+.|||.++++-
T Consensus 190 i~~~eLl-----------------------~d~~ek~i~~~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 190 IVLDELL-----------------------PDGNEKPIQVNIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred hhhhhhc-----------------------cccCcchHHHHHHHHHHhccCCCeEEEEe
Confidence 5510000 01111 13457888889999999987744
|
|
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=89.57 E-value=0.84 Score=45.46 Aligned_cols=117 Identities=19% Similarity=0.265 Sum_probs=64.3
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCceeEEEECC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLFNIIVANP 478 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD~Iv~NP 478 (570)
+....||=.++..+.+. .-+.+.+|+.|.-.+..+.|+.. ..++.+...|.++.+. .+..+=-+|+.+|
T Consensus 62 l~~YPGSP~ia~~llR~---qDrl~l~ELHp~d~~~L~~~~~~-----~~~v~v~~~DG~~~l~allPP~~rRglVLIDP 133 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE---QDRLVLFELHPQDFEALKKNFRR-----DRRVRVHHRDGYEGLKALLPPPERRGLVLIDP 133 (245)
T ss_dssp --EEE-HHHHHHHHS-T---TSEEEEE--SHHHHHHHTTS--T-----TS-EEEE-S-HHHHHHHH-S-TTS-EEEEE--
T ss_pred cCcCCCCHHHHHHhCCc---cceEEEEecCchHHHHHHHHhcc-----CCccEEEeCchhhhhhhhCCCCCCCeEEEECC
Confidence 77888888888877754 35899999999999999888863 4579999999987532 2235667999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc--cCeEEEEEEcCCC---HHHHHHHHHHCCCee
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV--KNGLLLIEHGYNQ---SNLVRKLLFKYGFSD 551 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~---~~~l~~ll~~~Gf~~ 551 (570)
||-... .|.+++..+.+.++ +.|.+++=.|.-. ...+.+.+.+.|...
T Consensus 134 pYE~~~-------------------------dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~~ 186 (245)
T PF04378_consen 134 PYEQKD-------------------------DYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIKK 186 (245)
T ss_dssp ---STT-------------------------HHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SSE
T ss_pred CCCCch-------------------------HHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCCC
Confidence 996433 34455544444444 5777665444333 344555555556543
|
; PDB: 2OO3_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.47 E-value=3.5 Score=43.13 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=39.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhc----C---CCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYS----K---NKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~----~---~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
+.+..++++|.|+|.++.-+++.. | ...+++-||.|++..+.-+++++.
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 345689999999999988776543 1 257899999999999988888874
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=88.55 E-value=7.2 Score=38.95 Aligned_cols=118 Identities=13% Similarity=0.169 Sum_probs=62.6
Q ss_pred CCCCEEEEECCcccH----HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 396 EKKIKLLEMGTGSGA----IAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~----i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
+.+.+||-+|+|+-- -+..|.+.+|.++.++-.|+.+-. ...-..+.+|.....+ +.+|
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~v---------------SDa~~~~~~Dc~t~~~--~~k~ 122 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYV---------------SDADQSIVGDCRTYMP--PDKF 122 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B----------------SSSEEEES-GGGEEE--SS-E
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhc---------------cccCCceeccccccCC--CCcc
Confidence 467899999999632 244555667778888888886532 1123467788866544 3799
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccC--CChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHHH
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYS--NGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLFK 546 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~--~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~~ 546 (570)
|+||++. | +++.--..++ ..-.++.-+..-+...|+-||.+++-+. .....++.+++..
T Consensus 123 DlIiSDm-Y---------------d~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~ 184 (299)
T PF06460_consen 123 DLIISDM-Y---------------DGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGY 184 (299)
T ss_dssp EEEEE--------------------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTT
T ss_pred cEEEEec-c---------------cccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhh
Confidence 9999974 2 1111111111 1123455566667789999999998554 3446777777754
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=87.66 E-value=2.5 Score=40.24 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=73.1
Q ss_pred CCCEEEEECCcccHHHHHHHH---hcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAI---YSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~---~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
++..|+++|.--|.-++..|. .+.+..+|+++|||-..+.-+... ..+|.|+.|+-.++... .+.+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~--eqi~~ 138 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIA--EQIRR 138 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHH--HHHHH
Confidence 567999999988887777664 233357999999998776544322 23599999987653211 11111
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---------------cCCCHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---------------GYNQSN 538 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---------------~~~~~~ 538 (570)
.-.-+| +..++-......+..-.-++....+|.-|-+++++- +.+..+
T Consensus 139 ~~~~y~-----------------kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~ 201 (237)
T COG3510 139 LKNEYP-----------------KIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYE 201 (237)
T ss_pred HhcCCC-----------------cEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHH
Confidence 101010 111111112223444455666667788888888743 223356
Q ss_pred HHHHHHHHCC
Q psy2395 539 LVRKLLFKYG 548 (570)
Q Consensus 539 ~l~~ll~~~G 548 (570)
.+..++++.+
T Consensus 202 AVe~ylr~~p 211 (237)
T COG3510 202 AVEAYLREFP 211 (237)
T ss_pred HHHHHHHhCC
Confidence 7888888765
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=87.28 E-value=1 Score=48.62 Aligned_cols=111 Identities=15% Similarity=0.129 Sum_probs=74.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc------CCCc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN------YKKL 470 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~------~~~~ 470 (570)
.+..+|-+|-|+|.+...+....+ ...+++|+++|.+++.|+.+.... ...+..+...|....+.. .+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~---q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFM---QSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchh---hhhhhhhhHhhchHHHHHHhhccccccC
Confidence 456788999999999988877765 589999999999999999997642 222344555555443221 2357
Q ss_pred eeEEEEC---CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 471 FNIIVAN---PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 471 fD~Iv~N---PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
||+++.+ ++ . ......+++ -.-..++..+...|.|.|.+++
T Consensus 371 ~dvl~~dvds~d-~--~g~~~pp~~----------------fva~~~l~~~k~~l~p~g~f~i 414 (482)
T KOG2352|consen 371 PDVLMVDVDSKD-S--HGMQCPPPA----------------FVAQVALQPVKMILPPRGMFII 414 (482)
T ss_pred CcEEEEECCCCC-c--ccCcCCchH----------------HHHHHHHHHHhhccCccceEEE
Confidence 9999984 22 1 000001111 1235788888999999999987
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=86.97 E-value=0.21 Score=43.06 Aligned_cols=58 Identities=19% Similarity=0.339 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEcCCC----------------------HHHHHHHHHH--CCCeeEEEEec----CCC
Q psy2395 509 SSIKEIVKNASKYLVKNGLLLIEHGYNQ----------------------SNLVRKLLFK--YGFSDIKSWRD----LSG 560 (570)
Q Consensus 509 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------~~~l~~ll~~--~Gf~~i~~~~D----~~g 560 (570)
+-+..+++.++..|+|||.+++|--+.. .+.+..+|.+ .||..++...- ..|
T Consensus 21 ~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~~~evGF~~~e~~~~~~~~~~g 100 (110)
T PF06859_consen 21 EGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLLEPEVGFSSVEELGVPENSSKG 100 (110)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHTSTTT---EEEEE---------
T ss_pred HHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHHhcccceEEEEEcccCCCCCCC
Confidence 4458999999999999999999863321 2345666665 58887664443 245
Q ss_pred CceEEE
Q psy2395 561 IERVTQ 566 (570)
Q Consensus 561 ~~R~~~ 566 (570)
.+|-+.
T Consensus 101 F~RpI~ 106 (110)
T PF06859_consen 101 FDRPIY 106 (110)
T ss_dssp ----EE
T ss_pred CCCcEE
Confidence 666543
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=86.93 E-value=1.9 Score=45.18 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=36.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+-..|+|+|.|-|+++..++-.+ +..|+|||-|..+.+.|++-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHHH
Confidence 44589999999999999999776 68999999998887777654
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=11 Score=40.40 Aligned_cols=140 Identities=14% Similarity=0.161 Sum_probs=74.7
Q ss_pred cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc---cc---CCCCEEEEE-cccccccccCCCceeEEEECCC
Q psy2395 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL---TK---YNIPIKFIK-SNWYNNLQNYKKLFNIIVANPP 479 (570)
Q Consensus 407 GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~---~~---~~~~v~~~~-~D~~~~l~~~~~~fD~Iv~NPP 479 (570)
|.|+++..+|..+..+.+|+++|++++.++.++....... +. ......+.. .|..+.. ...|+|+..-|
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~----~~ad~vii~Vp 82 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAY----RDADYVIIATP 82 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhh----cCCCEEEEeCC
Confidence 6666666665443335789999999999988765321100 00 000111211 1111111 34688887643
Q ss_pred CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE--EcCCCHHHHHHHHHHCC--CeeE---
Q psy2395 480 YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE--HGYNQSNLVRKLLFKYG--FSDI--- 552 (570)
Q Consensus 480 y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~--~~~~~~~~l~~ll~~~G--f~~i--- 552 (570)
--... ..+.-.+..+...++.+.+ +++|..++.. +++...+.+.+.+.+.| |..-
T Consensus 83 t~~~~-----------------k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~ 144 (388)
T PRK15057 83 TDYDP-----------------KTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLR 144 (388)
T ss_pred CCCcc-----------------CCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEECccccc
Confidence 21000 0011123456677777776 6777666553 45677788877776644 2221
Q ss_pred --EEEecCCCCceEEEEE
Q psy2395 553 --KSWRDLSGIERVTQGK 568 (570)
Q Consensus 553 --~~~~D~~g~~R~~~~~ 568 (570)
....|+...+|+++|-
T Consensus 145 ~G~a~~d~~~p~rvv~G~ 162 (388)
T PRK15057 145 EGKALYDNLHPSRIVIGE 162 (388)
T ss_pred CCcccccccCCCEEEEEc
Confidence 3455666777988873
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=86.36 E-value=1.7 Score=38.61 Aligned_cols=66 Identities=24% Similarity=0.331 Sum_probs=35.1
Q ss_pred CCCEEEEECCcccHH-HHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAI-AIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i-~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+..+|+++|-|.=.- +..|... +..|+++|+++. ++. ..+.++..|++++....-...|+|.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~---G~dV~~tDi~~~-------~a~-------~g~~~v~DDif~P~l~iY~~a~lIY 75 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKER---GFDVIATDINPR-------KAP-------EGVNFVVDDIFNPNLEIYEGADLIY 75 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHH---S-EEEEE-SS-S------------------STTEE---SSS--HHHHTTEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHc---CCcEEEEECccc-------ccc-------cCcceeeecccCCCHHHhcCCcEEE
Confidence 345999999996544 4445544 379999999998 222 1266899999885432225799999
Q ss_pred E-CCC
Q psy2395 476 A-NPP 479 (570)
Q Consensus 476 ~-NPP 479 (570)
+ +||
T Consensus 76 SiRPP 80 (127)
T PF03686_consen 76 SIRPP 80 (127)
T ss_dssp EES--
T ss_pred EeCCC
Confidence 8 665
|
; PDB: 2K4M_A. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=86.02 E-value=0.88 Score=40.03 Aligned_cols=85 Identities=20% Similarity=0.264 Sum_probs=55.8
Q ss_pred cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE--cccccccccC--CCceeEEEECCCCCC
Q psy2395 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK--SNWYNNLQNY--KKLFNIIVANPPYIP 482 (570)
Q Consensus 407 GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~--~D~~~~l~~~--~~~fD~Iv~NPPy~~ 482 (570)
|.|.+++.+|+.. +++|+++|.++.-++.+++.- ....+-. .|+.+.+... ...+|+|+-..+.
T Consensus 1 ~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~~~~~G--------a~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAM--GAKVIATDRSEEKLELAKELG--------ADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-- 68 (130)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTT--------ESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS--
T ss_pred ChHHHHHHHHHHc--CCEEEEEECCHHHHHHHHhhc--------ccccccccccccccccccccccccceEEEEecCc--
Confidence 5688999999887 489999999999998887532 1111111 1222222111 1479999874320
Q ss_pred CCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 483 KGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 483 ~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
...++.+..+|+++|.+++.-
T Consensus 69 -----------------------------~~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 69 -----------------------------GDTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp -----------------------------HHHHHHHHHHEEEEEEEEEES
T ss_pred -----------------------------HHHHHHHHHHhccCCEEEEEE
Confidence 356777788999999998743
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.95 E-value=2.6 Score=42.92 Aligned_cols=58 Identities=19% Similarity=0.185 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..+....+.....++..|||..+|+|..+++....+ ...+|+|+++..++.+.+.+..
T Consensus 209 ~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~---r~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 209 LALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLG---RRFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcC---CceEEEecCHHHHHHHHHHHHh
Confidence 444455544444678899999999999998877654 5799999999999999998875
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=84.91 E-value=1.4 Score=43.92 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHHHHhhcCC-CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 386 LVDLIVKKTFE-KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 386 l~~~~~~~~~~-~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
++.++...++. +..+++|+.||+|.++..+... ..+|+.-|+++..+...+
T Consensus 8 l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 8 LAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWK 59 (260)
T ss_dssp GHHHHHHHS-S-S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHcCCCCCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHH
Confidence 44556665554 6789999999999999988652 468999999997766555
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=84.91 E-value=5.9 Score=34.06 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=62.6
Q ss_pred CcccHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCC-CceeEEEECCCCC
Q psy2395 406 TGSGAIAIAIAIYSKNK-IEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYK-KLFNIIVANPPYI 481 (570)
Q Consensus 406 cGtG~i~l~la~~~~~~-~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~-~~fD~Iv~NPPy~ 481 (570)
||.|.++..+++..... ..|+.+|.+++.++.++.. + +.++.||..+.. .... ...|.|++-.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~--~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~-- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------G--VEVIYGDATDPEVLERAGIEKADAVVILTD-- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------T--SEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------c--cccccccchhhhHHhhcCccccCEEEEccC--
Confidence 67778888887654323 4899999999997776532 2 679999997642 2111 57888877321
Q ss_pred CCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeE
Q psy2395 482 PKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 482 ~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
-+.....+....+-+.|...++...... ...+.|++.|...+
T Consensus 72 --------------------------~d~~n~~~~~~~r~~~~~~~ii~~~~~~---~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 72 --------------------------DDEENLLIALLARELNPDIRIIARVNDP---ENAELLRQAGADHV 113 (116)
T ss_dssp --------------------------SHHHHHHHHHHHHHHTTTSEEEEEESSH---HHHHHHHHTT-SEE
T ss_pred --------------------------CHHHHHHHHHHHHHHCCCCeEEEEECCH---HHHHHHHHCCcCEE
Confidence 0111223333445567777777665432 23556677777644
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=84.16 E-value=3.1 Score=47.59 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCccccCCH--HHHHHHHHHHhhhhhHHH-HHHHHHHHHH
Q psy2395 4 LMLSKLEKFSKRLKELDFLLTQKEVHNNI--KDYCKKVREHSFLYPIVE-LYNNYKKINE 60 (570)
Q Consensus 4 ~~~~~l~~~~~r~~~l~~~l~~p~~w~d~--~~~~~l~ke~~~L~~~v~-~~~~~~~~~~ 60 (570)
.+...+++++++.++|+..|.+|++++|. +++.++.+++..++..++ .|.+|..+.+
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999999999999988664 378888888877775443 3444444443
|
|
| >PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA | Back alignment and domain information |
|---|
Probab=83.81 E-value=4.3 Score=38.26 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=43.0
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHH-HHHHHHCCC
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLV-RKLLFKYGF 549 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l-~~ll~~~Gf 549 (570)
||+|++|||+........-.....|.. -..+.+..+ -+.+++.++|.+++=+........ .++|..-||
T Consensus 1 fdvI~~DPPW~~~~~~~~~~~~~~Y~t--------m~~~~i~~L--pv~~l~~~~~~lflWvTn~~~~~~~~~l~~~WGf 70 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKGGAEAHYPT--------MSLDEIKSL--PVPQLAAPGALLFLWVTNSQLPEAKLELFPAWGF 70 (176)
T ss_pred CCEEEEeCCCCCcCcccccccccCCCc--------cCHHHHHhC--CHHHhCCCCcEEEEEeccchhhHHHHHHHHhCCC
Confidence 899999999865432111001111111 011122222 255677888898885656665666 899999999
Q ss_pred eeEEE
Q psy2395 550 SDIKS 554 (570)
Q Consensus 550 ~~i~~ 554 (570)
+.+..
T Consensus 71 ~~~~~ 75 (176)
T PF05063_consen 71 EYVTE 75 (176)
T ss_pred EEEEE
Confidence 87653
|
It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process |
| >KOG2360|consensus | Back alignment and domain information |
|---|
Probab=83.72 E-value=2.5 Score=44.36 Aligned_cols=85 Identities=13% Similarity=0.099 Sum_probs=63.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-CceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~fD~ 473 (570)
++++.+|+|.||-.|.-+.-+|....+..+++|+|.++...+..+.-+...+ ...+....+|+.....+++ ...-.
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag---~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAG---VSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcC---CCccccccccccCCCCcccccceeE
Confidence 3567899999999999999888766657899999999999998888777532 2236677899876421111 45778
Q ss_pred EEECCCCCC
Q psy2395 474 IVANPPYIP 482 (570)
Q Consensus 474 Iv~NPPy~~ 482 (570)
|+++|+-..
T Consensus 288 iL~DpscSg 296 (413)
T KOG2360|consen 288 ILVDPSCSG 296 (413)
T ss_pred EEeCCCCCC
Confidence 999998643
|
|
| >KOG3924|consensus | Back alignment and domain information |
|---|
Probab=82.66 E-value=4.7 Score=42.57 Aligned_cols=84 Identities=15% Similarity=0.204 Sum_probs=58.3
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc------ccCCCCEEEEEccccccc--c
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL------TKYNIPIKFIKSNWYNNL--Q 465 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~------~~~~~~v~~~~~D~~~~l--~ 465 (570)
...+.+...|+|.|.|.....+|..+. ...-+|+++.+..-+.|..|...+- ......+..+++++...- .
T Consensus 189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~ 267 (419)
T KOG3924|consen 189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT 267 (419)
T ss_pred ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence 346778999999999999888886653 4567899998888777776654320 011224888999886532 1
Q ss_pred cCCCceeEEEECC
Q psy2395 466 NYKKLFNIIVANP 478 (570)
Q Consensus 466 ~~~~~fD~Iv~NP 478 (570)
......++|++|-
T Consensus 268 eI~~eatvi~vNN 280 (419)
T KOG3924|consen 268 EIQTEATVIFVNN 280 (419)
T ss_pred HHhhcceEEEEec
Confidence 2235689999863
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=82.50 E-value=5.3 Score=42.09 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=37.0
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
++.+|+=+||| .|.+++.+++... ..+|+++|.++.-++.|++..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~ 213 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAG 213 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhC
Confidence 34489999999 5777777887764 589999999999999998743
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.47 E-value=8.9 Score=39.96 Aligned_cols=43 Identities=23% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.+||=.||| .|.+++.+|+... ..+|+++|.+++.++.|++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH
Confidence 56788888875 4555666676652 2379999999999888865
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=81.74 E-value=4.3 Score=43.22 Aligned_cols=45 Identities=22% Similarity=0.193 Sum_probs=36.9
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.++.+||..|||+ |.+++.+|+... ..+|+++|.+++.++.+++.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 4577999999988 888888988763 23699999999998888764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.75 E-value=6 Score=45.84 Aligned_cols=186 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred ccccchhHHHHHHHHHhhcC--------CCCCEEEEECCcccHHHHHHHHhc--------CCCcEEEEEeCCHHHHHHHH
Q psy2395 376 VLIPRPETELLVDLIVKKTF--------EKKIKLLEMGTGSGAIAIAIAIYS--------KNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~--------~~~~~VLDlGcGtG~i~l~la~~~--------~~~~~V~gvDis~~al~~A~ 439 (570)
+|+|-..-..++...-..+. ..+..|||..+|||.+...+.... .-.....+.||---+.-+|.
T Consensus 816 VyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLhA~eIvLLsYYIAa 895 (1518)
T COG4889 816 VYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELHAFEIVLLSYYIAA 895 (1518)
T ss_pred eecchhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHHHH
Q ss_pred HHHHhhcccCCCCEEEEEcccccc----------------------cccCCCceeEEEECCCCCCCCCcc-cCCCCcccc
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNN----------------------LQNYKKLFNIIVANPPYIPKGDIH-LNKGDLRFE 496 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~----------------------l~~~~~~fD~Iv~NPPy~~~~~~~-~~~~~~~~e 496 (570)
-|+............-+.+=++.. .....-+.-+|+.||||....... .....+.|.
T Consensus 896 iNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~nl~yp 975 (1518)
T COG4889 896 INIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQNLSYP 975 (1518)
T ss_pred hhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCccccccccc
Q ss_pred ccccccccCCCh-----------HHHHHHHHHHhhccccCeEEEEEEcC-----CCHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 497 PINALTDYSNGL-----------SSIKEIVKNASKYLVKNGLLLIEHGY-----NQSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 497 p~~al~~~~~gl-----------~~~~~~l~~~~~~LkpgG~l~~~~~~-----~~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
-.-...-..-+- +.|-+.++-+.+.++.+|.+-|++.. ..+..++.-+.+ .|+.+.++ .+-|
T Consensus 976 kLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GVigFV~NggfIDgnsaDG~R~sla~-dfs~iYvl-NLrG 1053 (1518)
T COG4889 976 KLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGVIGFVVNGGFIDGNSADGFRKSLAQ-DFSHIYVL-NLRG 1053 (1518)
T ss_pred hHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCceEEEEecCceecCccchHHHHHHHH-HhhhheEE-eccC
Q ss_pred Cce
Q psy2395 561 IER 563 (570)
Q Consensus 561 ~~R 563 (570)
..|
T Consensus 1054 n~R 1056 (1518)
T COG4889 1054 NQR 1056 (1518)
T ss_pred Ccc
|
|
| >PRK10884 SH3 domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=80.40 E-value=16 Score=35.56 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=21.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcCcc
Q psy2395 2 KHLMLSKLEKFSKRLKELDFLLTQKE 27 (570)
Q Consensus 2 ~~~~~~~l~~~~~r~~~l~~~l~~p~ 27 (570)
.|++...++++++++++++.++.+-+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999998888743
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 570 | ||||
| 2b3t_B | 360 | Molecular Basis For Bacterial Class 1 Release Facto | 5e-91 | ||
| 2b64_Y | 354 | 30s Ribosomal Subunit, Trnas, Mrna And Release Fact | 3e-64 | ||
| 2fvo_A | 333 | Docking Of The Modified Rf1 X-ray Structure Into Th | 7e-59 | ||
| 1rq0_A | 342 | Crystal Structure Of Peptide Releasing Factor 1 Len | 8e-59 | ||
| 1zbt_A | 371 | Crystal Structure Of Peptide Chain Release Factor 1 | 4e-58 | ||
| 1mi6_A | 365 | Docking Of The Modified Rf2 X-Ray Structure Into Th | 3e-53 | ||
| 1ml5_Z | 365 | Structure Of The E. Coli Ribosomal Termination Comp | 1e-52 | ||
| 1gqe_A | 365 | Polypeptide Chain Release Factor 2 (Rf2) From Esche | 4e-51 | ||
| 2b3t_A | 276 | Molecular Basis For Bacterial Class 1 Release Facto | 3e-41 | ||
| 1t43_A | 277 | Crystal Structure Analysis Of E.Coli Protein (N5)-G | 3e-41 | ||
| 2wh1_Y | 351 | Insights Into Translational Termination From The St | 8e-35 | ||
| 2ihr_1 | 365 | Rf2 Of Thermus Thermophilus Length = 365 | 8e-35 | ||
| 3f1e_X | 378 | Crystal Structure Of A Translation Termination Comp | 9e-35 | ||
| 2b9m_Y | 365 | 30s Ribosomal Subunit, Trnas, Mrna And Release Fact | 9e-35 | ||
| 2x9r_Y | 351 | Structure Of The 70s Ribosome Bound To Release Fact | 1e-34 | ||
| 1nv8_A | 284 | N5-Glutamine Methyltransferase, Hemk Length = 284 | 4e-12 | ||
| 1sg9_A | 282 | Crystal Structure Of Thermotoga Maritima Protein He | 4e-12 | ||
| 4dzr_A | 215 | The Crystal Structure Of Protein-(Glutamine-N5) Met | 1e-11 | ||
| 1vq1_A | 294 | Crystal Structure Of N5-Glutamine Methyltransferase | 2e-11 | ||
| 2rsm_A | 115 | Solution Structure And Sirna-Mediated Knockdown Ana | 4e-08 | ||
| 4dh9_Y | 140 | Crystal Structure Of Yaej Bound To The 70s Ribosome | 4e-04 | ||
| 2jy9_A | 148 | Nmr Structure Of Putative Trna Hydrolase Domain Fro | 9e-04 |
| >pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 | Back alignment and structure |
|
| >pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354 | Back alignment and structure |
|
| >pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-ray Structure Into The Low Resolution Cryo-em Map Of E.coli 70s Ribosome Bound With Rf1 Length = 333 | Back alignment and structure |
|
| >pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342 | Back alignment and structure |
|
| >pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (rf-1) (smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 | Back alignment and structure |
|
| >pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 | Back alignment and structure |
|
| >pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 Length = 365 | Back alignment and structure |
|
| >pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 | Back alignment and structure |
|
| >pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 276 | Back alignment and structure |
|
| >pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein (N5)-Glutamine Methyltransferase (Hemk) Length = 277 | Back alignment and structure |
|
| >pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome Length = 351 | Back alignment and structure |
|
| >pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 | Back alignment and structure |
|
| >pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 378 | Back alignment and structure |
|
| >pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 | Back alignment and structure |
|
| >pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 | Back alignment and structure |
|
| >pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk Length = 284 | Back alignment and structure |
|
| >pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An N5-Glutamine Methyltransferase Length = 282 | Back alignment and structure |
|
| >pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5) Methyltransferase (Release Factor-Specific) From Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius Dsm 446 Length = 215 | Back alignment and structure |
|
| >pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase, Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At 2.80 A Resolution Length = 294 | Back alignment and structure |
|
| >pdb|2RSM|A Chain A, Solution Structure And Sirna-Mediated Knockdown Analysis Of The Mitochondrial Disease-Related Protein C12orf65 (Ict2) Length = 115 | Back alignment and structure |
|
| >pdb|4DH9|Y Chain Y, Crystal Structure Of Yaej Bound To The 70s Ribosome Length = 140 | Back alignment and structure |
|
| >pdb|2JY9|A Chain A, Nmr Structure Of Putative Trna Hydrolase Domain From Salmonella Typhimurium. Northeast Structural Genomics Consortium Target Str220 Length = 148 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 Length = 360 | Back alignment and structure |
|---|
Score = 499 bits (1288), Expect = e-175
Identities = 161/300 (53%), Positives = 221/300 (73%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
MK +++KLE +R +E+ LL + + + + RE++ L + + +++++ E
Sbjct: 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQE 60
Query: 61 DIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTG 120
DI TA+ ML+D EMR A DE+ AK++ +E +++ L+LPKD +D+RN F+E+RAGTG
Sbjct: 61 DIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTG 120
Query: 121 GDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESG 180
GDE+ALF DL RMY R++E W+ EI+S S E GGYKEIIA+I G VY +LKFESG
Sbjct: 121 GDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESG 180
Query: 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240
HRVQRVP TE+QGRIHTSACTVAV+PE + E ++NPADLRIDT+R+SGAGGQH+N T
Sbjct: 181 GHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTT 240
Query: 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
DSA+RITH+PTGIVV+CQ++RSQHKNKA AL +L ARI +++ ++Q A RR L+GS
Sbjct: 241 DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGS 300
|
| >3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V Length = 354 | Back alignment and structure |
|---|
Score = 488 bits (1259), Expect = e-171
Identities = 128/296 (43%), Positives = 190/296 (64%), Gaps = 1/296 (0%)
Query: 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIIT 64
ML KL++ + +EL+ LL+ EV + Y R ++ + ++ L Y+K+ ED+
Sbjct: 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQ 60
Query: 65 AKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDES 124
A+ +L+D E++ A E R +E E+++ +LPKD D+R+ +EIRAGTGG+E+
Sbjct: 61 AESLLDDPELKEMAKAEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEA 120
Query: 125 ALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRV 184
ALF DL MY+RF+E ++ E++ +++GG+ +++ + G Y K+ESGVHRV
Sbjct: 121 ALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRV 180
Query: 185 QRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244
QRVP TETQGRIHTS TVAV+P+A+E D +N ++RID RASG GGQ +N TDSAV
Sbjct: 181 QRVPVTETQGRIHTSTATVAVLPKAEEE-DFALNMDEIRIDVMRASGPGGQGVNTTDSAV 239
Query: 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
R+ H+PTGI+V CQ+ RSQ KN+ AL IL +R+ + K E+ K R IG+
Sbjct: 240 RVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGT 295
|
| >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} Length = 371 | Back alignment and structure |
|---|
Score = 485 bits (1252), Expect = e-170
Identities = 129/304 (42%), Positives = 194/304 (63%), Gaps = 5/304 (1%)
Query: 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINE 60
+ +L+ R +EL LL+ +V ++ K + + RE + V +Y YK++ +
Sbjct: 11 HHMNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQ 70
Query: 61 DIITAKEMLN----DLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIR 116
+I A+EM+ D E+ A +E+ +K + E +++ L+LPKD ND +NI +EIR
Sbjct: 71 NIADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIR 130
Query: 117 AGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLK 176
GGDE+ALF DLL MY +++E WKFE++ S + +GG KE++A + G +VYSKLK
Sbjct: 131 GAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLK 190
Query: 177 FESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQH 236
+ESG HRVQRVP TE+QGR+HTS TV V+PE +E+ + I+P DLR+D Y ASGAGGQ+
Sbjct: 191 YESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEV-EYEIDPKDLRVDIYHASGAGGQN 249
Query: 237 INKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRL 296
+NK +AVRI H+PT I V+ Q +R+Q KN+ A+KI+ AR+ D + Q R+
Sbjct: 250 VNKVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKS 309
Query: 297 LIGS 300
+G+
Sbjct: 310 TVGT 313
|
| >1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A Length = 342 | Back alignment and structure |
|---|
Score = 443 bits (1143), Expect = e-154
Identities = 119/288 (41%), Positives = 177/288 (61%), Gaps = 13/288 (4%)
Query: 13 SKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDL 72
++ KE++ LL + ++ E++ + I + N K+ E I +E +
Sbjct: 2 KEKKKEIEKLLARPDLTPE--QMKNYGMEYAKIEEIENITNRIKETQEFIELLREEGEN- 58
Query: 73 EMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLL 132
E+ EI +K + + ++L+ +EIR GTGG+E+ALF DL
Sbjct: 59 EL------EIEKYEKEL---DQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLF 109
Query: 133 RMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTET 192
RMY R++ER W E+ +++GG +E++ + G N Y LK+ESGVHRVQRVP TE+
Sbjct: 110 RMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTES 169
Query: 193 QGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG 252
GRIHTS TVAV+PE +E DI I P DL+I+T+RASG GGQ++NKT+SAVRITH+PTG
Sbjct: 170 GGRIHTSTATVAVLPEIEEK-DIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTG 228
Query: 253 IVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
IVV CQN+RSQ++NK AL+IL AR+ + +++ ++ R+ IG+
Sbjct: 229 IVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGT 276
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-109
Identities = 98/267 (36%), Positives = 159/267 (59%), Gaps = 8/267 (2%)
Query: 303 KKSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGK 362
+ S + ILL++VT ++ E +L ++ L+ L+ RR GEPIA++ G
Sbjct: 15 QASESPRRDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGV 74
Query: 363 KEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNK 422
+EF+ L L ++ LIPRP+TE LV+ + + E+ ++L++GTG+GAIA+A+A +
Sbjct: 75 REFWSLPLFVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPD- 133
Query: 423 IEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSNWYNNLQNYKKLFNIIVANPPYI 481
EIIA D A+ +A++NA+ I I ++S+W++ L + F +IV+NPPYI
Sbjct: 134 CEIIAVDRMPDAVSLAQRNAQH----LAIKNIHILQSDWFSALAGQQ--FAMIVSNPPYI 187
Query: 482 PKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR 541
+ D HL +GD+RFEP+ AL +G++ I I++ + LV G LL+EHG+ Q VR
Sbjct: 188 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVR 247
Query: 542 KLLFKYGFSDIKSWRDLSGIERVTQGK 568
+ G+ D+++ RD ERVT G+
Sbjct: 248 QAFILAGYHDVETCRDYGDNERVTLGR 274
|
| >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y Length = 365 | Back alignment and structure |
|---|
Score = 280 bits (719), Expect = 6e-90
Identities = 99/286 (34%), Positives = 152/286 (53%), Gaps = 5/286 (1%)
Query: 9 LEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEM 68
+ + RLKEL+ L + N+ + K +E + L V+ + + + + ++ E
Sbjct: 19 IPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEE 78
Query: 69 LNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFV 128
L E R E+ A K++ ++ + L + ++N + I+ G GG E+ +
Sbjct: 79 LPA-EEREALKPELEEAAKKLDELYHQT----LLNFPHAEKNAILTIQPGAGGTEACDWA 133
Query: 129 NDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVP 188
LLRMY RF+ER ++ E++ + G + G N Y L E+GVHR+ R
Sbjct: 134 EMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHRLVRPS 193
Query: 189 KTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITH 248
+ GR HTS V VIPE DE ++ + P +LRID RASG GGQ +N TDSAVR+ H
Sbjct: 194 PFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRVVH 253
Query: 249 IPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMR 294
+PTGI V CQ RSQ KNK ALKIL AR+ + + ++++ +R
Sbjct: 254 LPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALR 299
|
| >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* Length = 365 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 6e-89
Identities = 113/289 (39%), Positives = 175/289 (60%), Gaps = 7/289 (2%)
Query: 9 LEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEM 68
+ +RL+E++ L Q +V N + +E S L +V+ + K+ ED+ E+
Sbjct: 27 YDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLEL 86
Query: 69 L---NDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESA 125
+D E N A+ E++ ++++ +E + + D + +++I+AG+GG E+
Sbjct: 87 AVEADDEETFNEAVAELDALEEKLAQLEFRR----MFSGEYDSADCYLDIQAGSGGTEAQ 142
Query: 126 LFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQ 185
+ + L RMY+R++E +K EII S E+ G K + +I G Y L+ E+GVHR+
Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202
Query: 186 RVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVR 245
R ++ GR HTS + V PE D+ DI INPADLRID YRASGAGGQH+N+T+SAVR
Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262
Query: 246 ITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMR 294
ITHIPTGIV QCQNDRSQHKNK A+K + A++ + +++++ + M
Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAME 311
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 273 bits (700), Expect = 3e-88
Identities = 72/258 (27%), Positives = 130/258 (50%), Gaps = 20/258 (7%)
Query: 314 ILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNIT 373
+++ V + +L + + + E + +L+++R G P+ YI+G+KEF GL +
Sbjct: 40 LIVSRVLGIRKEDLFLK-DLGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVE 98
Query: 374 SDVLIPRPETELLVDLIVKKTFEKK-IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISK 432
V +PRPETE LV+L ++ + + ++GTGSGAI +++A +S + ATD+S
Sbjct: 99 EGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFS--DAIVFATDVSS 156
Query: 433 FALKIAKKNAKKKLTKYNIP--IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNK 490
A++IA+KNA+ ++ + K + + +I++NPPY+ HL K
Sbjct: 157 KAVEIARKNAE----RHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYVKSSA-HLPK 211
Query: 491 GDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFS 550
D+ FEP AL +GL +E +Y ++L+E G +Q ++K++ F
Sbjct: 212 -DVLFEPPEALFGGEDGLDFYREFFG---RYDTSGKIVLMEIGEDQVEELKKIVSDTVF- 266
Query: 551 DIKSWRDLSGIERVTQGK 568
+D +G R
Sbjct: 267 ----LKDSAGKYRFLLLN 280
|
| >2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} Length = 115 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 2e-69
Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 178 ESGV--HRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQ 235
SG R+Q P G +A TV V D + +N ++L + G GGQ
Sbjct: 5 SSGKWGLRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQ 61
Query: 236 HINKTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQS 288
NKT + V + H+P+GIVV+C RS +N+ A K+L ++ S
Sbjct: 62 ATNKTSNCVVLKHVPSGIVVKCHQTRSVDQNRKIARKVLQEKVDVFYNSGPSS 114
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215 | Back alignment and structure |
|---|
Score = 221 bits (565), Expect = 3e-69
Identities = 59/208 (28%), Positives = 109/208 (52%), Gaps = 14/208 (6%)
Query: 370 LNITSDVLIPRPETELLVDLIVK--KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIA 427
+ D LIPRP+TE+LV+ ++ K +++++GTGSG IA++IA+ + + A
Sbjct: 1 FEVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPG-VSVTA 59
Query: 428 TDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKL---FNIIVANPPYIPKG 484
D+S AL +A++NA+ ++ + + ++ L + ++ IV+NPPYIP G
Sbjct: 60 VDLSMDALAVARRNAE----RFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTG 115
Query: 485 DIHLNKGDLR-FEPINALTDYSNGLSSIKEIVKNASKYLVK-NGLLLIEHGYNQSNLVRK 542
+I + +R +EP AL +GL + + L + + +E G+NQ++ V +
Sbjct: 116 EIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQADEVAR 175
Query: 543 LLFKYGFS--DIKSWRDLSGIERVTQGK 568
L + ++ +DL GI+RV
Sbjct: 176 LFAPWRERGFRVRKVKDLRGIDRVIAVT 203
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 216 bits (552), Expect = 6e-67
Identities = 36/222 (16%), Positives = 79/222 (35%), Gaps = 18/222 (8%)
Query: 340 INILNKL-IQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKK 398
+++ KL R I K +GL + L+ P + + +
Sbjct: 1 MSLNGKLDFSNRQARILYNKAIAK-ALFGLDIEYHPKGLVTTPISRYIFLKTFLR---GG 56
Query: 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458
LE+GTG A+ +A N ++ AT++ + + A++N ++ N+ +
Sbjct: 57 EVALEIGTGHTAMMALMAEKFFN-CKVTATEVDEEFFEYARRNIER--NNSNVRLVKSNG 113
Query: 459 NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518
+ F++I + PPY K A+ G ++++ A
Sbjct: 114 GIIKGVVEGT--FDVIFSAPPYYDKPLGR------VLTEREAIGGGKYGEEFSVKLLEEA 165
Query: 519 SKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSG 560
+L G + + + + ++ + G S +D+
Sbjct: 166 FDHLNPGGKVALYLPDKEK--LLNVIKERGIKLGYSVKDIKF 205
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Length = 170 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-29
Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 35/189 (18%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
D P +T L+D + ++ E KI +L++GT +G I + + +++TD++ A
Sbjct: 2 DWYEPGEDTYTLMDALEREGLEMKI-VLDLGTSTGVITEQLR----KRNTVVSTDLNIRA 56
Query: 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR 494
L+ + ++++ ++ +++V NPPY+P
Sbjct: 57 LESHRGG------------NLVRADLLCSINQES--VDVVVFNPPYVPD----------- 91
Query: 495 FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554
+ G E++ + L L+ N+ V L + G+
Sbjct: 92 -TDDPIIGGGYLGR----EVIDRFVDAVTVGMLYLLVIEANRPKEVLARLEERGYGTRIL 146
Query: 555 WRDLSGIER 563
E
Sbjct: 147 KVRKILGET 155
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 1e-22
Identities = 33/202 (16%), Positives = 80/202 (39%), Gaps = 16/202 (7%)
Query: 353 GEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIA 412
E + Y++ + L + + V + LL +K K++++ +G+G I
Sbjct: 11 DERLDYLLAEN----LRIIQSPSVFSFSIDAVLLAKFSYLPI--RKGKIIDLCSGNGIIP 64
Query: 413 IAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK-LF 471
+ ++ ++ K +I+ +I + +AK++ + I+ I+ + K
Sbjct: 65 LLLS--TRTKAKIVGVEIQERLADMAKRSV--AYNQLEDQIEIIEYDLKKITDLIPKERA 120
Query: 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
+I+ NPPY D L + F + ++++ ++ A+ L + G
Sbjct: 121 DIVTCNPPYFATPDTSLKNTNEHFRIAR-----HEVMCTLEDTIRVAASLLKQGGKANFV 175
Query: 532 HGYNQSNLVRKLLFKYGFSDIK 553
H + + ++ KY +
Sbjct: 176 HRPERLLDIIDIMRKYRLEPKR 197
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 Length = 254 | Back alignment and structure |
|---|
Score = 89.8 bits (222), Expect = 2e-20
Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 26/214 (12%)
Query: 363 KEFYGLVLNITSDVLIPRPETELLVDLIV-------KKTFEKKIKLLEMGTGSGAIAIAI 415
+E +GL ++I + LIP L V + +++GTG+ I +
Sbjct: 24 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 83
Query: 416 AIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-----QNYKKL 470
+AT++ AKKN ++ + IK +K L + + +
Sbjct: 84 GATLNG-WYFLATEVDDMCFNYAKKNVEQN--NLSDLIKVVKVPQKTLLMDALKEESEII 140
Query: 471 FNIIVANPPYIPKGD----------IHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520
++ + NPP+ + I + L +K I+ ++ +
Sbjct: 141 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQ 200
Query: 521 YLVKNGLLLIEHGYNQS-NLVRKLLFKYGFSDIK 553
+ G S +++ L G +
Sbjct: 201 LKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVT 234
|
| >4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A Length = 140 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 3e-20
Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 30/113 (26%)
Query: 214 DININPADLRIDTYRASGAGGQHINKTDSAVRIT------------------------HI 249
+ I +L I RA GAGGQH+NKT +A+ +
Sbjct: 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISS 66
Query: 250 PTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQ------SNTAKMRRL 296
IV++ Q RSQ N+ AL L+A IK+ ++ + +K RRL
Sbjct: 67 DGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRL 119
|
| >2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} Length = 108 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 3e-18
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 24/99 (24%)
Query: 213 EDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG-------------------- 252
++++ A++ + RA GAGGQ++NK SA+ +
Sbjct: 6 NNVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRIT 65
Query: 253 ----IVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQ 287
IV++ Q R+Q +N+A AL L I ++ E
Sbjct: 66 SDGVIVLKAQQYRTQEQNRADALLRLSELIVNAAKLEHH 104
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-16
Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 38/178 (21%)
Query: 364 EFYGLVLNITSD--VLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIY 418
G L +D V T++LV+ +V + +L++G G G I IA+A
Sbjct: 17 ILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDD---ILDLGCGYGVIGIALADE 73
Query: 419 SKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478
K DI++ A+K+AK+N K N I+ + S+ Y N+++ K +N I+ NP
Sbjct: 74 VK---STTMADINRRAIKLAKENIKLNNLD-NYDIRVVHSDLYENVKDRK--YNKIITNP 127
Query: 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536
P G + I++ + L NG + + Q
Sbjct: 128 PIR------------------------AGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ 161
|
| >1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 Length = 112 | Back alignment and structure |
|---|
Score = 69.8 bits (170), Expect = 8e-15
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 25/100 (25%)
Query: 207 PEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG-------------- 252
E + I L I R+SG GGQ++NK +S +
Sbjct: 7 GEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIAL 66
Query: 253 -----------IVVQCQNDRSQHKNKAFALKILLARIKDS 281
+V+ ++ R Q +N A L+ + I ++
Sbjct: 67 THKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEA 106
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 4e-13
Identities = 97/558 (17%), Positives = 185/558 (33%), Gaps = 137/558 (24%)
Query: 42 HSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEINLAKKRIFDIELEIKKLI- 100
H + E YK I +++ + ++ D K I E EI +I
Sbjct: 5 HHMDFETGEHQYQYKDILSVFE--DAFVDNFDCKD-VQDMP----KSILSKE-EIDHIIM 56
Query: 101 LPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNY------WKFEIISRSLS 154
+ +F + + + FV ++LR NY K E S+
Sbjct: 57 SKDAVSGTLRLFWTLLS-KQEEMVQKFVEEVLR-------INYKFLMSPIKTEQRQPSMM 108
Query: 155 EIGGYKEIIARIIGLN-VYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIE 213
Y E R+ N V++K + V R+ ++ +
Sbjct: 109 TRM-YIEQRDRLYNDNQVFAK-------YNVSRLQPYL---KLRQALL------------ 145
Query: 214 DININPADLRIDTYRASGAGGQHINKT---DSAVR----ITHIPTGI----VVQCQNDRS 262
+ PA + G+G KT + I + C + +
Sbjct: 146 --ELRPAK-NVLIDGVLGSG-----KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 263 QHKNKAFALKILLARIKDSKLREQQSNT-----------AKMRRLLIGSVQKKSPLNIFE 311
+ L+ LL +I D + ++ A++RRLL +
Sbjct: 198 VLEM----LQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC------ 246
Query: 312 TNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRIL----GEPIAYIIGKKEFYG 367
LL V L +V+ + + N N + +IL + + +
Sbjct: 247 ---LL--V--LLNVQ---------NAKAWNAFN--LSCKILLTTRFKQVTDFLSAATTTH 288
Query: 368 LVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLL--EMGTGSGAIAIAIAIYSKNKIEI 425
+ L+ S L P LL+ K + + + L E+ T + ++I +++ +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLPREVLTTN---PRRLSIIAESIRDG 340
Query: 426 IATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNIIVANPP--YI 481
+AT + K KLT I+S+ N L+ Y+K+F+ + PP +I
Sbjct: 341 LAT-WDNW-----KHVNCDKLTT------IIESS-LNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 482 PKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR 541
P + L D+ + + + + S +++ K ++ + L L N+ L R
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 542 KLLFKYGFSDIKSWRDLS 559
++ Y DL
Sbjct: 448 SIVDHYNIPKTFDSDDLI 465
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 2e-12
Identities = 25/170 (14%), Positives = 65/170 (38%), Gaps = 27/170 (15%)
Query: 364 EFYGLVLNITSDV-LIPRPETELLVDLIVKKTFEKKI--KLLEMGTGSGAIAIAIAIYSK 420
+ G I + + R ++ ++ + + +++++G G+G I + + +
Sbjct: 187 KLEGTDWTIHNHANVFSRTGLDIGARFFMQ-HLPENLEGEIVDLGCGNGVIGLTLLDKNP 245
Query: 421 NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPY 480
+ +++ D S A+ ++ N + + + +F+ +N + ++ ++ FN ++ NPP
Sbjct: 246 -QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFR--FNAVLCNPP- 301
Query: 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530
H + A + L NG L I
Sbjct: 302 -----FHQQHA----------LTDNVAWEMFHH----ARRCLKINGELYI 332
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 37/192 (19%)
Query: 345 KLIQRRILGEPIA---YIIGKKEFYGLVLNITSDVLIPR---PETELLVDLIVKKTFEKK 398
L R+ +P+ G+ GL + V ++LL+ + T K
Sbjct: 141 GLYFGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGK- 199
Query: 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458
+L++G G+G +++A A +S KI + D+S A++ ++ + + S
Sbjct: 200 --VLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLA----ANGVEGEVFAS 252
Query: 459 NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518
N ++ + K F++I++NPP H L + + +++ A
Sbjct: 253 NVFSEV---KGRFDMIISNPP------FHDGMQT--------------SLDAAQTLIRGA 289
Query: 519 SKYLVKNGLLLI 530
++L G L I
Sbjct: 290 VRHLNSGGELRI 301
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 6e-12
Identities = 24/164 (14%), Positives = 58/164 (35%), Gaps = 19/164 (11%)
Query: 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK--------KKLT 447
++ ++ ++G G+GA +A+A K E+ + S+ + A+++ + ++
Sbjct: 35 DRACRIADLGAGAGAAGMAVA-ARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93
Query: 448 KYNIPIK-FIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSN 506
+ K+ L + F+ ++ NPPY GD ++
Sbjct: 94 VLEADVTLRAKARVEAGLPDEH--FHHVIMNPPYNDAGDRRTPDALKAEA-------HAM 144
Query: 507 GLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFS 550
++ ++ AS +V G L + +
Sbjct: 145 TEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGSRFGG 188
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 3e-11
Identities = 28/186 (15%), Positives = 64/186 (34%), Gaps = 34/186 (18%)
Query: 345 KLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEM 404
+ RILG + F ++ S +L+ + + + ++L++
Sbjct: 187 RAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEA------LQERLGPEGVRGRQVLDL 240
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464
G G GA+ + +A + E++ + ++ +K + + + + S+ L
Sbjct: 241 GAGYGALTLPLA---RMGAEVVGVEDDLASVLSLQKGLE----ANALKAQALHSDVDEAL 293
Query: 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524
+ F+IIV NPP H+ + + A+ L
Sbjct: 294 TEEAR-FDIIVTNPP------FHVGGA----------VILDVAQAFVNV----AAARLRP 332
Query: 525 NGLLLI 530
G+ +
Sbjct: 333 GGVFFL 338
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 8e-07
Identities = 23/158 (14%), Positives = 57/158 (36%), Gaps = 19/158 (12%)
Query: 379 PRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
L+++ + +++ GTG+G +A + + A DI A++ A
Sbjct: 34 ASTAAYFLIEIYNDGNIGGR-SVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETA 90
Query: 439 KKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPI 498
K+N + F+ ++ ++ + NPP+ H ++ +
Sbjct: 91 KRNCGG--------VNFMVADV----SEISGKYDTWIMNPPFGSVVK-HSDRAFIDKAFE 137
Query: 499 NALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536
++ YS G + ++ ++ + G + E
Sbjct: 138 TSMWIYSIGNAKARDFLR---REFSARGDVFREEKVYI 172
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 4e-06
Identities = 33/227 (14%), Positives = 69/227 (30%), Gaps = 24/227 (10%)
Query: 303 KKSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYII-- 360
K P + E + + S+ E N+ + ++ LN L +R + G+ +A +I
Sbjct: 226 KSRPGRLLEEGRKIDFNVLFSEPEPNTNDNDIWNVNLLSSLNDLGRRILTGDELAELIHD 285
Query: 361 -----GKKEFYGLVLNITSDVLIPRPETELLVDLI---VKKTFEKKIKLLEMGTGSGAIA 412
E V ++L + + + + + + GSG +
Sbjct: 286 IATRGRGHEGV---------VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLL 336
Query: 413 IAIAIYSKN--KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---QNY 467
++ N +I A DI L++ + +
Sbjct: 337 ATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPED 396
Query: 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEI 514
+++V NPPY+ K + I + L +
Sbjct: 397 FANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGV 443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 9e-06
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN 466
GSG IA+ A + A D+ + L +A++ A + I+F++++ +L
Sbjct: 213 GSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSW---IRFLRADA-RHLPR 268
Query: 467 YKKLFNIIVANPPY 480
+ + I+ANPP+
Sbjct: 269 FFPEVDRILANPPH 282
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 377 LIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436
+I +P+ + + +K + L+ G G ++I ++ + +IS LK
Sbjct: 5 IIRQPQLYRFLKYCNESNLDKTV--LDCGAGGDLPPLSIF--VEDGYKTYGIEISDLQLK 60
Query: 437 IAKKNAKKKLTKYNIPIKFIKSN 459
A+ +++ N + K +
Sbjct: 61 KAENFSREN----NFKLNISKGD 79
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 18/103 (17%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
IP + V + + + +L++G G+G ++ + D+S+
Sbjct: 22 RKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKM 80
Query: 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477
L+IAK + N+ +K+I+++ Y+ ++++ ++++V+
Sbjct: 81 LEIAKNRFRG-----NLKVKYIEAD-YSKY-DFEEKYDMVVSA 116
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439
P ++ + I+ + +++G+G GA++IA+A ++ I A D SK +IA
Sbjct: 26 APIYPIIAENIINRFGITAGTCIDIGSGPGALSIALA--KQSDFSIRALDFSKHMNEIAL 83
Query: 440 KNAKKK 445
KN
Sbjct: 84 KNIADA 89
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 14/127 (11%)
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP--IKFIKS 458
+++ G G I A+ +IA DI + +A+ NA+ Y I I+FI
Sbjct: 82 VVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAE----VYGIADKIEFICG 134
Query: 459 NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518
++ K +++ +PP+ D+R + K+I N
Sbjct: 135 DFLLLASFLK--ADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEI---FRLSKKITNNI 189
Query: 519 SKYLVKN 525
+L +N
Sbjct: 190 VYFLPRN 196
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 24/168 (14%), Positives = 50/168 (29%), Gaps = 27/168 (16%)
Query: 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKI 423
+FY T LI + +T +LE+ G G +
Sbjct: 49 DFYDEGAADTYRDLIQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFL---DLGW 105
Query: 424 EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPK 483
E+ A ++S L +K + ++ + + K+ F +V
Sbjct: 106 EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDM-SAFALDKR-FGTVV-------- 155
Query: 484 GDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
+ IN L + + + + + ++L G L+
Sbjct: 156 ---------ISSGSINELDE-----ADRRGLYASVREHLEPGGKFLLS 189
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 6e-05
Identities = 19/129 (14%), Positives = 39/129 (30%), Gaps = 18/129 (13%)
Query: 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461
++ G+G +A + DI A+ K + IK
Sbjct: 27 VDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDR--VTLIKDGHQ 84
Query: 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521
N + ++ N Y+P GD T + ++ + + +
Sbjct: 85 NMDKYIDCPVKAVMFNLGYLPSGDHS------------ISTRPETTIQALSKAM----EL 128
Query: 522 LVKNGLLLI 530
LV G++ +
Sbjct: 129 LVTGGIITV 137
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 13/144 (9%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKS 458
+ +G +IA+ + K I DI + K +K A + I+
Sbjct: 175 DIFVLGDDDL-TSIALMLSGLPK-RIAVLDIDERLTKFIEKAANE----IGYEDIEIFTF 228
Query: 459 NWYNNL-QNYKKLFNIIVANPPYIPKG-DIHLNKG--DLRFEPINALTDYSNGLSSIKEI 514
+ L F+ + +PP + + +G L+ + SS+ +
Sbjct: 229 DLRKPLPDYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITRRESSLDKW 288
Query: 515 VKNASKYLVKNGLLL--IEHGYNQ 536
+ L + +++ I +N+
Sbjct: 289 REIQKLLLNEFNVVITDIIRNFNE 312
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 6e-05
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455
K + +++ G G G + + + + D + L A++ + +F
Sbjct: 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEF 76
Query: 456 IKSNWYN 462
++ +
Sbjct: 77 LEGDATE 83
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 7e-05
Identities = 19/151 (12%), Positives = 62/151 (41%), Gaps = 31/151 (20%)
Query: 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
E + + ++ + + ++L++ G+G + +A + E++ D+ + L++A++
Sbjct: 26 EIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELA---ERGYEVVGLDLHEEMLRVARRK 82
Query: 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501
AK++ N+ I+F++ + + + F+ + F I
Sbjct: 83 AKER----NLKIEFLQGDVL-EIAFKNE-FDAVTM-----------------FFSTIMYF 119
Query: 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532
+ ++++ ++ L G+ + +
Sbjct: 120 DE-----EDLRKLFSKVAEALKPGGVFITDF 145
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 8e-05
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK-KLTKYNIPIKFIKSNWYNNLQ 465
GSG I I +A+ + EII + + L A+ NA + IKFI+ + L
Sbjct: 227 GSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDK---IKFIQGDA-TQLS 281
Query: 466 NYKKLFNIIVANPPY 480
Y + ++N PY
Sbjct: 282 QYVDSVDFAISNLPY 296
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 9e-05
Identities = 21/150 (14%), Positives = 54/150 (36%), Gaps = 31/150 (20%)
Query: 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
++ +++ V+ L++ G+G + + A D+S+ L A+
Sbjct: 23 WSDFIIEKCVENNLVFD-DYLDLACGTGNLTENLC---PKFKNTWAVDLSQEMLSEAENK 78
Query: 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501
+ + + + + +NL +K F++I + N +
Sbjct: 79 FRSQ----GLKPRLACQDI-SNLNINRK-FDLITC-----------------CLDSTNYI 115
Query: 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
D + +K+ K S +L + G+ + +
Sbjct: 116 IDSDD----LKKYFKAVSNHLKEGGVFIFD 141
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 9e-05
Identities = 27/157 (17%), Positives = 63/157 (40%), Gaps = 32/157 (20%)
Query: 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434
D L+ V ++++ E ++ ++G G+G + +A + E+ D+S+
Sbjct: 12 DELMQDVPYPEWVAWVLEQ-VEPGKRIADIGCGTGTATLLLA----DHYEVTGVDLSEEM 66
Query: 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR 494
L+IA++ A + N + F + L+ + + I +
Sbjct: 67 LEIAQEKAMET----NRHVDFWVQDM-RELELPEPVDAITIL------------------ 103
Query: 495 FEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531
+ +N L ++ +K+ +A++ L G LL +
Sbjct: 104 CDSLNYLQTEAD----VKQTFDSAARLLTDGGKLLFD 136
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 1e-04
Identities = 15/70 (21%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY 449
++ K +K+ K+L++ G G + + E++ DIS+ ++ A++ AK +
Sbjct: 31 LLMKYMKKRGKVLDLACGVGGFSFLLE---DYGFEVVGVDISEDMIRKAREYAKSR---- 83
Query: 450 NIPIKFIKSN 459
++FI +
Sbjct: 84 ESNVEFIVGD 93
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 25/157 (15%), Positives = 52/157 (33%), Gaps = 24/157 (15%)
Query: 380 RPETELLVDLIVKKTFEKKI-KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
R T ++ + ++L++ G+G +I + + + + D S LK A
Sbjct: 39 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV---EEGFSVTSVDASDKMLKYA 95
Query: 439 KKNAKK-KLTKYNIPIKFIKSNWYNNLQNYK--KLFNIIVANPPYIPKGDIHLNKGDLRF 495
K + ++NW ++ F+ ++
Sbjct: 96 LKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICL-----------------G 138
Query: 496 EPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532
L D S + +KN + + GLL+I+H
Sbjct: 139 NSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 175
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Length = 396 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 21/110 (19%)
Query: 424 EIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN---WYNNLQNYKKLFNIIVANPPY 480
E+I D S A++ AK+NA KL +KFI + LQ + F+I+V +PP
Sbjct: 242 EVIGIDKSPRAIETAKENA--KLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPA 299
Query: 481 IPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530
+ + L Y + + G+L+
Sbjct: 300 FVQH---------EKDLKAGLRAY-------FNVNFAGLNLVKDGGILVT 333
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Length = 393 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 25/131 (19%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++L++ + G A+ A + +A D AL + + A + + +
Sbjct: 217 RVLDVYSYVGGFALRAA---RKGAYALAVDKDLEALGVLDQAALRL----GLRVDIRHGE 269
Query: 460 WYNNLQNYKKLFNIIVANPP-YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518
L+ + F+ ++ +PP + +L ++V+ A
Sbjct: 270 ALPTLRGLEGPFHHVLLDPPTLVK------RPEELP----AMKRHL-------VDLVREA 312
Query: 519 SKYLVKNGLLL 529
+ L + G L
Sbjct: 313 LRLLAEEGFLW 323
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++ ++G+ + IA ++ + A+K + I K N
Sbjct: 24 RIADIGSDHAYLPCFAVKNQTAS-FAIAGEVVDGPFQSAQKQVRSS--GLTEQIDVRKGN 80
Query: 460 WYNNLQNYKKLFNIIVAN 477
++ + I++A
Sbjct: 81 GLAVIEKKDAIDTIVIAG 98
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 4e-04
Identities = 31/162 (19%), Positives = 48/162 (29%), Gaps = 36/162 (22%)
Query: 397 KKIKLLEMGTGSGAIAIAI-----AIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451
+IK+L +G G+G I + I A Y I + S + K+ K N+
Sbjct: 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENV 111
Query: 452 PIKFIKSNW-----YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSN 506
+ K + + ++ I I L
Sbjct: 112 KFAWHKETSSEYQSRMLEKKELQKWDFIHM---------------------IQML----Y 146
Query: 507 GLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYG 548
+ I +K L N +LI S KL KYG
Sbjct: 147 YVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWD-KLWKKYG 187
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 7e-04
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKI---EIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456
+ ++GTGSG +AIA K+ ++ATDIS ++ A++NA N I I
Sbjct: 63 TVADVGTGSGILAIAAH-----KLGAKSVLATDISDESMTAAEENAAL-----N-GIYDI 111
Query: 457 KSNWYNNLQNYKKLFNIIVAN 477
+ L + F++IVAN
Sbjct: 112 ALQKTSLLADVDGKFDLIVAN 132
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445
+I + ++ L+++G G G + +A K +II +D+S +K A+ +
Sbjct: 25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84
Query: 446 LTKY-NIP 452
Y N+
Sbjct: 85 PDTYKNVS 92
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
K+L++GTGSG +AIA K + + DI L A+ NAK+ + +F++ +
Sbjct: 123 KVLDLGTGSGVLAIAAE---KLGGKALGVDIDPMVLPQAEANAKRN----GVRPRFLEGS 175
Query: 460 WYNNLQNYKKLFNIIVAN 477
L F+++VAN
Sbjct: 176 LEAALPFGP--FDLLVAN 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 570 | |||
| 3d5a_X | 354 | RF1, peptide chain release factor 1; ribosome, rib | 100.0 | |
| 1zbt_A | 371 | RF-1, peptide chain release factor 1; peptide chai | 100.0 | |
| 2b3t_B | 360 | RF-1, peptide chain release factor 1; translation | 100.0 | |
| 1gqe_A | 365 | Release factor 2, RF2; protein synthesis, ribosome | 100.0 | |
| 2ihr_1 | 365 | Peptide chain release factor 2; mixed alpha-beta, | 100.0 | |
| 1rq0_A | 342 | RF-1, peptide chain release factor 1; X-RAY, cryst | 100.0 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 100.0 | |
| 2rsm_A | 115 | Probable peptide chain release factor C12ORF65 HO | 100.0 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 100.0 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.94 | |
| 1j26_A | 112 | Immature colon carcinoma transcript 1; peptide cha | 99.91 | |
| 2jva_A | 108 | Peptidyl-tRNA hydrolase domain protein; GFT hydrol | 99.91 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.88 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.88 | |
| 4dh9_Y | 140 | YAEJ; ribosome, YAEJ, ribosome stalling, ribosome | 99.87 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.83 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.79 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.79 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.74 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.73 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.73 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.72 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.72 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.72 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.71 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.7 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.7 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.69 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.69 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.68 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.67 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.67 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.66 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.66 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.66 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.66 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.66 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.65 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.65 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.65 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.65 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.64 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.64 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.64 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.63 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.63 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.63 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.63 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.62 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.62 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.62 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.62 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.62 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.61 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.6 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.6 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.6 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.6 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.59 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.59 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.59 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.58 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.58 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.58 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.58 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.58 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.58 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.58 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.57 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.57 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.57 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.57 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.57 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.57 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.56 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.56 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.56 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.55 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.55 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.55 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.55 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.54 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.54 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.54 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.54 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.54 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.54 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.54 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.53 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.53 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.53 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.53 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.53 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.52 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.52 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.52 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.52 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.52 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.51 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.51 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.51 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.51 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.51 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.51 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.51 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.51 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.51 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.5 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.5 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.5 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.5 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.5 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.5 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.5 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.5 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.5 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.5 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.5 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.5 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.49 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.49 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.49 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.49 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.49 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.49 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.48 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.48 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.48 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.48 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 99.48 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.48 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 99.48 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.48 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.48 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.47 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.47 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.47 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.47 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.46 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.46 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.46 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.46 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.46 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.46 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.46 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.45 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.45 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.45 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.45 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.45 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.45 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.44 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.44 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.44 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.43 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.43 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.43 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.43 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.43 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.43 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.43 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.43 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.43 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.43 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.42 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.42 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.42 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.42 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.41 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.41 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.41 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 99.41 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.41 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.41 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.41 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.4 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.4 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.4 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.4 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.4 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.4 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.4 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.4 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.4 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.39 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.39 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.39 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.39 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.39 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.39 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.38 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.38 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.38 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.38 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.38 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.38 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.38 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.38 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.37 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.37 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.37 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.37 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.36 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.36 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.36 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.35 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.35 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.35 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.34 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.34 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.34 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.34 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.34 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.34 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.34 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.33 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.33 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.33 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.32 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.32 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.32 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.32 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.31 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.31 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.31 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.31 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.31 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.3 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.3 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.29 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.28 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.27 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.26 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.26 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.26 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.25 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.25 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.24 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.24 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.24 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.23 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.23 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.22 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.22 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.21 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.21 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.2 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.19 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.18 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.17 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.17 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.16 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.16 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.15 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.15 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.15 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.15 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.14 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.14 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 99.13 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.12 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.12 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.12 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.11 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.06 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.05 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.04 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.03 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.03 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.0 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.99 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.98 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.95 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.93 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.93 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.92 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.91 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.9 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.87 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.87 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.87 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.87 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.87 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.81 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.8 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.8 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.76 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.75 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.67 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.55 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.43 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.41 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.4 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.27 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.25 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.24 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.23 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.18 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.13 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.97 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.93 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.87 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.81 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.79 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.78 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.73 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.65 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.63 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.55 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.53 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.5 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 97.43 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.41 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.36 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.34 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.33 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.2 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 97.1 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.99 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.99 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.78 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 96.59 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.49 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.35 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.31 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.2 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 96.19 | |
| 2lw1_A | 89 | ABC transporter ATP-binding protein UUP; ABC REG s | 95.47 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 95.44 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 94.5 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 94.3 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 93.77 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.03 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.62 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 92.59 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 92.4 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 91.67 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.47 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 91.06 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 90.79 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 90.69 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 90.21 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 89.9 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 89.89 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 89.86 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 89.73 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 89.39 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 89.08 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 88.78 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 88.7 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 88.24 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 88.15 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 87.89 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 87.45 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 87.14 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 86.87 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 86.73 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 86.51 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 86.24 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 86.17 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 85.64 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 85.57 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 85.5 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 85.34 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 85.06 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 84.83 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 84.59 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 84.51 | |
| 1yf3_A | 259 | DNA adenine methylase; T4DAM, methyltransferase, t | 84.48 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 84.43 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 84.31 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 84.29 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 84.25 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 83.89 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 83.74 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 83.47 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 83.47 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 83.41 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 83.24 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 82.96 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 82.34 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 82.34 | |
| 3okq_A | 141 | BUD site selection protein 6; coiled-coil, protein | 82.33 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 82.16 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 81.93 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 81.89 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 81.7 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 81.27 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 81.22 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 81.17 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 81.12 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 81.01 | |
| 2dpm_A | 284 | M.dpnii 1, protein (adenine-specific methyltransfe | 81.0 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 80.55 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 80.52 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 80.4 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 80.08 |
| >3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-93 Score=723.43 Aligned_cols=309 Identities=41% Similarity=0.670 Sum_probs=304.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q psy2395 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEINL 84 (570)
Q Consensus 5 ~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~~~~~~a~~e~~~ 84 (570)
|+++|+.+.+|+++|+++|++|+||+|++++++++||++.|+++++.|++|.+..+|++++.+|+.|++|+++|.+|+..
T Consensus 1 ~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~ 80 (354)
T 3d5a_X 1 MLDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREA 80 (354)
T ss_dssp CHHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEE
Q psy2395 85 AKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIA 164 (570)
Q Consensus 85 ~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 164 (570)
+++++++++.+|..+|+|++|+|.++|+|||+||+||+||++||+|||+||.+||+++||++++++.++++.+|+|+|++
T Consensus 81 l~~~~~~le~~l~~lLlp~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k~v~~ 160 (354)
T 3d5a_X 81 LLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSKVVF 160 (354)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEEEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceE
Q psy2395 165 RIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244 (570)
Q Consensus 165 ~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v 244 (570)
.|+|++||++||+|+|||||||||||+++||+||||++|+|+|++++++ +.|+++||+++|+|||||||||||||+|||
T Consensus 161 ~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~P~~~~~~-i~i~~~dl~i~~~RssG~GGQ~VNkt~SaV 239 (354)
T 3d5a_X 161 EVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEED-FALNMDEIRIDVMRASGPGGQGVNTTDSAV 239 (354)
T ss_dssp EEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCC-CCCCGGGEEEEEECCCSCCHHHHHHCCCEE
T ss_pred EEECccHHHHHHhccCeeEEEecCCcCCCCcCccCceEEEEeccCcccc-cccCccceEEEeecCCCCCCcccccccceE
Confidence 9999999999999999999999999999999999999999999998865 999999999999999999999999999999
Q ss_pred EEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 245 ~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
||+|+||||+|+||++|||++||+.|+++|+++|++++.++++++.+..|+.+++.++||++|||||||+
T Consensus 240 rl~HlPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~q 309 (354)
T 3d5a_X 240 RVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQ 309 (354)
T ss_dssp EEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTT
T ss_pred EEEEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeeeEECCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987
|
| >1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-93 Score=722.91 Aligned_cols=311 Identities=42% Similarity=0.692 Sum_probs=269.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhC----ChhHHHHH
Q psy2395 3 HLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLN----DLEMRNFA 78 (570)
Q Consensus 3 ~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~----D~~~~~~a 78 (570)
+++..+++.+.+|+++|+++|++|+||+|++++++++||++.|+++++.|++|.+..+|++++.+|+. |++|+++|
T Consensus 13 ~~~~~~l~~~~~r~~el~~~l~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~~e~D~e~~~~a 92 (371)
T 1zbt_A 13 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQEMIKDASGDPELEEMA 92 (371)
T ss_dssp CCHHHHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHHHhcCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999983 89999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCC
Q psy2395 79 LDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGG 158 (570)
Q Consensus 79 ~~e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g 158 (570)
.+|+..+++++++++.+|..+|+|++|+|.++|+|||+||+||+||++||+|||+||++||+++||++++++.++++.+|
T Consensus 93 ~~e~~~l~~~l~~le~~l~~lLlp~~~~D~~naileI~aGaGG~EA~~fa~~L~rMY~r~Ae~~g~kvevl~~~~~~~gG 172 (371)
T 1zbt_A 93 KEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGG 172 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSCCCTTTTSCEEEEEEECTTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCcccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccc
Q psy2395 159 YKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHIN 238 (570)
Q Consensus 159 ~~~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vn 238 (570)
+|+|++.|+|++||++||+|+|||||||||||+++||+||||++|+|+|++++++ +.|+++||+++|+|||||||||||
T Consensus 173 ~ksv~~~I~G~~ayg~Lk~EsGvHRvqRvp~tes~gR~hTS~asV~V~Pe~~ev~-i~I~~~dl~i~~~RssGpGGQ~VN 251 (371)
T 1zbt_A 173 LKEVVAMVSGQSVYSKLKYESGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVE-YEIDPKDLRVDIYHASGAGGQNVN 251 (371)
T ss_dssp EEEEEEEEESTTHHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEEEEECCCGGG-SCCCGGGEEEEEECC---------
T ss_pred ceEEEEEEECccHHHHHhhccCeEEEEeecCCCCCCcccccceEEEEeccccccc-cccCcCcEEEEEecCCCCCCCccc
Confidence 9999999999999999999999999999999999999999999999999998865 999999999999999999999999
Q ss_pred cccceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 239 KTDSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 239 k~~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
||+|||||+|+||||+|+||++|||++||+.|+++|+++|++++.++++++.+..|+.+++.++||++||||||++
T Consensus 252 kt~SaVrlthlPtGivV~~q~eRSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~ig~g~Rse~IRtYnf~q 327 (371)
T 1zbt_A 252 KVATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVGTGDRSERIRTYNFPQ 327 (371)
T ss_dssp CCCCEEEEEETTTTEEEEECSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----CCSCSCTTSEEEEEETTT
T ss_pred ccceeEEEEECCCeEEEEECCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCeeeEECCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987
|
| >2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-94 Score=731.57 Aligned_cols=314 Identities=51% Similarity=0.797 Sum_probs=255.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Q psy2395 1 MKHLMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALD 80 (570)
Q Consensus 1 ~~~~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~~~~~~a~~ 80 (570)
|+|+|+++|+.+.+|+++|+++|++|+||+|++++++++|+++.|+++++.|++|.+..+|++++.+|++|++|+++|.+
T Consensus 1 m~~~~~~~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~eD~e~~~~a~~ 80 (360)
T 2b3t_B 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQD 80 (360)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC---------------------
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCCchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCce
Q psy2395 81 EINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYK 160 (570)
Q Consensus 81 e~~~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~ 160 (570)
|+..+++++++++.+|+.+++|++|+|.++|+|||+||+||+||++||+|||+||.+||+++||++++++.++++.+|+|
T Consensus 81 e~~~l~~~~~~le~~l~~~ll~~~~~D~~n~ileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~k~ev~~~~~~~~gG~k 160 (360)
T 2b3t_B 81 ELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK 160 (360)
T ss_dssp --------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEE
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCce
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccc
Q psy2395 161 EIIARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKT 240 (570)
Q Consensus 161 ~~~~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~ 240 (570)
+|++.|+|++||++||+|+|||||||||||+++||+||||++|+|+|++++++.+.|+++||+++|+|||||||||||||
T Consensus 161 ~~~~~i~G~~ayg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~e~i~i~~~dl~i~~~RssG~GGQ~VNkt 240 (360)
T 2b3t_B 161 EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTT 240 (360)
T ss_dssp EEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCS
T ss_pred EEEEEEEcccHHHHHHhccCeEEEEecCCCcccCcCCccceEEEEecCcccccccccChhheEEeeecCCCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999998764388999999999999999999999999
Q ss_pred cceEEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 241 DSAVRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 241 ~s~v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
+|||||+|+||||+|+||++|||++||+.|+++|+++|++++.++++++.+..|+.+++.++||++||||||++
T Consensus 241 ~saVrl~hlPtGivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~rse~IRtYnf~~ 314 (360)
T 2b3t_B 241 DSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQ 314 (360)
T ss_dssp SEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTT
T ss_pred cceEEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCeeeEECCC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999987
|
| >1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-90 Score=701.94 Aligned_cols=303 Identities=38% Similarity=0.530 Sum_probs=291.2
Q ss_pred HHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHH
Q psy2395 7 SKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEIN 83 (570)
Q Consensus 7 ~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~ 83 (570)
-+++.+.+|+++|+++|++|+||+|++++++++||++.|+++|+.|++|....+|++++.+|+ +|++|+++|.+|+.
T Consensus 25 ~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~e~~~~a~~e~~ 104 (365)
T 1gqe_A 25 LDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELD 104 (365)
T ss_dssp TTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999999999999999999999999998 39999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEE
Q psy2395 84 LAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEII 163 (570)
Q Consensus 84 ~~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 163 (570)
.++++++.++ ..+||+||+|.++|+|||+||+||+||++||+|||+||.+||+++||++++++.++++.+|+|+|+
T Consensus 105 ~l~~~l~~le----~~~ll~~~~D~~naileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~e~~G~Ks~~ 180 (365)
T 1gqe_A 105 ALEEKLAQLE----FRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVT 180 (365)
T ss_dssp HHHHHHHHHG----GGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEE
T ss_pred HHHHHHHHHH----HHHccCCcccccceEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCCCceeEEE
Confidence 9999999988 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccce
Q psy2395 164 ARIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSA 243 (570)
Q Consensus 164 ~~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~ 243 (570)
+.|+|++||++||+|+|||||||||||+++||+||||++|+|+|++++..++.|+++||+++|+|||||||||||||+||
T Consensus 181 ~~I~G~~ayg~Lk~EsGvHRvqRvs~~es~gRrhTS~asV~V~Pe~~~~v~i~i~~~dl~~~~~RssG~GGQ~VNkt~sa 260 (365)
T 1gqe_A 181 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA 260 (365)
T ss_dssp EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCE
T ss_pred EEEECcCHHHHhhhccceEEEEEeCCCCCcCCCCcceeEEEEecCCCcccccccCHHHceEeeecCCCCCCCcccCccce
Confidence 99999999999999999999999999999999999999999999997644599999999999999999999999999999
Q ss_pred EEEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 244 VRITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 244 v~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
|||+|+||||+|+||++|||++||+.|+++|+++|++.+.+++.++.+..|+.+... .||++||||||++
T Consensus 261 Vrl~HiPtgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i-~~G~~IRtY~f~~ 330 (365)
T 1gqe_A 261 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDI-GWGSQIRSYVLDD 330 (365)
T ss_dssp EEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCC-CSCSEEEEEEGGG
T ss_pred EEEEECCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-CccCCeEeEECCC
Confidence 999999999999999999999999999999999999999999999988888865544 5999999999987
|
| >2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-88 Score=688.61 Aligned_cols=300 Identities=32% Similarity=0.464 Sum_probs=286.7
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH-hhCChhHHHHHHHHHHHHH
Q psy2395 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKE-MLNDLEMRNFALDEINLAK 86 (570)
Q Consensus 8 ~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~-l~~D~~~~~~a~~e~~~~~ 86 (570)
+|+.+.+|+++|+++|++|+||+|++++++++++++.|+++|+.|++|....+|++++.+ |+.+++ ++|.+|+..+.
T Consensus 18 ~l~~~~~r~~ele~~l~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~~eed--~~a~~e~~~l~ 95 (365)
T 2ihr_1 18 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELPAEER--EALKPELEEAA 95 (365)
T ss_dssp SHHHHHHHHTTTTTSTTCGGGTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSCCTTG--GGTGGGTHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999 986545 88999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEE
Q psy2395 87 KRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARI 166 (570)
Q Consensus 87 ~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 166 (570)
+++++++ ..+||++|+|.++|+|||+||+||+||++||+|||+||.+||+++||++++++.++++.+|+|+|++.|
T Consensus 96 ~~~~~le----~~~ll~~~~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~Ae~~g~k~evl~~~~~~~gG~ks~~~~I 171 (365)
T 2ihr_1 96 KKLDELY----HQTLLNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILV 171 (365)
T ss_dssp HHHHHHH----HHHHTCSSSTTSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHTTTCEEEEEEEEECSSSSEEEEEEEE
T ss_pred HHHHHHH----HHHhcCCcccccCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCeEEEEEEE
Confidence 9999988 668889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEE
Q psy2395 167 IGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRI 246 (570)
Q Consensus 167 ~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~ 246 (570)
+|++||++||+|+|||||||||||+++||+||||++|+|+|++++..++.|+++||+++|+|||||||||||||+|||||
T Consensus 172 ~G~~ayg~Lk~E~GvHRvqRvs~~es~gRrhTS~asV~V~P~~~~~~~i~i~~~dl~i~~~RssG~GGQ~VNkt~saVrl 251 (365)
T 2ihr_1 172 KGENAYGLLSPEAGVHRLVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSAVRV 251 (365)
T ss_dssp ESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEEECCSSSSCCCCGGGEEEEEECCCCSSCCSGGGSCSEEEE
T ss_pred EccCHHHhhhhCcCEEEEEEeCCCCccCCccceeEEEEEecCCCcccccccCccceEEEEeecCCCCCceecccceEEEE
Confidence 99999999999999999999999999999999999999999997655589999999999999999999999999999999
Q ss_pred EecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 247 THIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 247 ~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
+|+||||+|+||++|||++||+.|+++|+++|++.+.++++++.+..|+.+... .||++||||||++
T Consensus 252 ~h~Ptgivv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~~~i-~~G~~IRtYnf~~ 318 (365)
T 2ihr_1 252 VHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALRGEVRPI-EWGSQIRSYVLDK 318 (365)
T ss_dssp EETTTTEEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCSCCS-CCCSCSEEEEGGG
T ss_pred EEcCCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CccCCeeeEECCC
Confidence 999999999999999999999999999999999999999999999998654433 4899999999987
|
| >1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-85 Score=655.82 Aligned_cols=288 Identities=41% Similarity=0.646 Sum_probs=260.1
Q ss_pred HHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHHHHH
Q psy2395 13 SKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDL-EMRNFALDEINLAKKRIFD 91 (570)
Q Consensus 13 ~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~-~~~~~a~~e~~~~~~~~~~ 91 (570)
.+|+++|+++|++|+| |++++++++||++.|+++++.|++|. +++++.+|+.++ |- .+|+..+++++++
T Consensus 2 ~~r~~el~~~~~~p~~--d~~~~~~~~ke~~~l~~~v~~~~~~~----~~~~~~~l~~e~~D~----~~e~~~l~~~l~~ 71 (342)
T 1rq0_A 2 KEKKKEIEKLLARPDL--TPEQMKNYGMEYAKIEEIENITNRIK----ETQEFIELLREEGEN----ELEIEKYEKELDQ 71 (342)
T ss_dssp TTTTTHHHHHHHSSCC--CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTTTTTC----CSCHHHHHHHHHH
T ss_pred hHHHHHHHHHhhCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHhcCCH----HHHHHHHHHHHHH
Confidence 4678999999999999 99999999999999999999999998 777788887421 21 7889999999999
Q ss_pred HHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccch
Q psy2395 92 IELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNV 171 (570)
Q Consensus 92 ~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ 171 (570)
++++|+.+|+| +|.++|+|||+||+||+||++||+|||+||.+||+++||++++++.++++.+|+|+|++.|+|++|
T Consensus 72 le~~l~~lL~p---~D~~~aileI~aGaGG~Ea~~fa~~L~rMY~r~ae~~g~kvevl~~~~~~~gG~ks~~~~I~G~~a 148 (342)
T 1rq0_A 72 LYQELLFLLSP---EASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNA 148 (342)
T ss_dssp HHHHHHHHHSC---SSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTH
T ss_pred HHHHHHHhcCc---cccCCeEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCccEEEEEEEECcCH
Confidence 99999888875 558999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCC
Q psy2395 172 YSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPT 251 (570)
Q Consensus 172 ~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~ 251 (570)
|++||+|+|||||||||||+++||+||||++|+|+|++++++ +.|+++||+++|+|||||||||||||+|||||+|+||
T Consensus 149 yg~Lk~E~GvHRvqRvp~~es~gR~hTS~asV~V~Pe~~~~~-i~i~~~dl~i~~~RssGpGGQ~VNKt~SaVrl~hlPt 227 (342)
T 1rq0_A 149 YGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKD-IEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPT 227 (342)
T ss_dssp HHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGG-SCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTT
T ss_pred HHHHhhccCeEEEEecCCcccCCCCcccceEEEEeccccccc-cccChhHeEEEeecCCCCCCcccccccceEEEEECCC
Confidence 999999999999999999999999999999999999998865 9999999999999999999999999999999999999
Q ss_pred ceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 252 GIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 252 gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
||+|+||++|||++||+.|+++|+++|++++.+++.++.+..|+.+++.++||++||||||++
T Consensus 228 Givv~~q~~RSQ~~Nr~~A~~~L~~~L~~~~~~~~~~~~~~~r~~~i~~g~Rse~IRtYnf~~ 290 (342)
T 1rq0_A 228 GIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQ 290 (342)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTT
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCeEEEECCC
Confidence 999999999999999999999999999999999999999999999999999999999999987
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=307.00 Aligned_cols=254 Identities=38% Similarity=0.643 Sum_probs=231.5
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDL 389 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~ 389 (570)
.....+++++++.++..++.+...+++.++.+.+..++.++..+.|++|++|..+||+..|.+++++|+|+|+++.+++.
T Consensus 22 ~~a~~ll~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~~f~~~~~~~~~~~~ipr~~te~l~~~ 101 (276)
T 2b3t_A 22 RDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQ 101 (276)
T ss_dssp HHHHHHHHHHHTCCHHHHHHTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHhccCCCCCHHHHHHHHHHHHHHHcCCChhHeeeeeEECCceEEeCCCCcccCchHHHHHHH
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 390 ~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
++.....++.+|||+|||+|.+++.++...+ +.+|+|+|+|+.+++.|++|+..++. .+++++++|+.+..+ .+
T Consensus 102 ~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~---~~v~~~~~d~~~~~~--~~ 175 (276)
T 2b3t_A 102 ALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSALA--GQ 175 (276)
T ss_dssp HHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGGGT--TC
T ss_pred HHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC---CceEEEEcchhhhcc--cC
Confidence 9887545567999999999999999998765 58999999999999999999987532 269999999987543 36
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGF 549 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf 549 (570)
+||+|++||||+.....+....+..|+|..+++++.+|++.+..+++.+.++|+|||+++++++..+.+.+.+++.+.||
T Consensus 176 ~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~~Gf 255 (276)
T 2b3t_A 176 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGY 255 (276)
T ss_dssp CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTC
T ss_pred CccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCC
Confidence 89999999999987765555667789999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCceEEEEEe
Q psy2395 550 SDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 550 ~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+.+++|++|.+|+++++|
T Consensus 256 ~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 256 HDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp TTCCEEECTTSSEEEEEEEC
T ss_pred cEEEEEecCCCCCcEEEEEE
Confidence 99999999999999999986
|
| >2rsm_A Probable peptide chain release factor C12ORF65 HO mitochondrial; GGQ domain, translation; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=261.78 Aligned_cols=101 Identities=32% Similarity=0.448 Sum_probs=96.9
Q ss_pred cceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCceEEEEecc
Q psy2395 181 VHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQND 260 (570)
Q Consensus 181 ~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~gi~~~~~~~ 260 (570)
-|||||+|+|+++| ||+++|.|+|+.++...+.|+++||+++|+|||||||||||||+|||||+|+||||+|+||++
T Consensus 10 g~rvqrvp~tes~g---ts~~~v~v~p~~d~~~~l~I~~~dl~~~~~RssGpGGQ~VNKt~SaVrl~H~PTGivV~~q~~ 86 (115)
T 2rsm_A 10 GLRLQEKPALLFPG---MAASTVQVAGRKDYPALLPLNESELEEQFVKGHGPGGQATNKTSNCVVLKHVPSGIVVKCHQT 86 (115)
T ss_dssp CCCCCCCCCCCCCC---CCCCCCCCCSCCCCCCSCCCCGGGCEEEECSCCCSCSSSCCCSCCCEEEECTTTCCEEEECCS
T ss_pred ceeEEecCcccCCc---cceEEEEeccccCCCccCCcCHHHeEEEEeeCCCCCccccCccceeEEEecCCCCcEEEEcCC
Confidence 38999999999999 999999999999887779999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Q psy2395 261 RSQHKNKAFALKILLARIKDSKLR 284 (570)
Q Consensus 261 rsq~~n~~~a~~~l~~~l~~~~~~ 284 (570)
|||++||+.|+++|++||++....
T Consensus 87 RSQ~~Nr~~A~~~L~~kL~e~~~~ 110 (115)
T 2rsm_A 87 RSVDQNRKIARKVLQEKVDVFYNS 110 (115)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999988654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=295.03 Aligned_cols=239 Identities=30% Similarity=0.481 Sum_probs=208.0
Q ss_pred hhhhhhHhhhccCcceeeech--hhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHH
Q psy2395 311 ETNILLKYVTRLSDVELIINN--EKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVD 388 (570)
Q Consensus 311 ~~~~LL~~~l~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~ 388 (570)
...+|+++++++++..++.+. +.+++. +.+.+++.+|..+.|++|++|..+||+..|.+++++|+|+|+++.+++
T Consensus 37 ~a~~ll~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~r~~~~p~~yi~g~~~f~~~~~~v~~~~lipr~~te~lv~ 113 (284)
T 1nv8_A 37 EVLLIVSRVLGIRKEDLFLKDLGVSPTEE---KRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVE 113 (284)
T ss_dssp HHHHHHHHHHTCCGGGGCCSSCCCCHHHH---HHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHhccccccccCH---HHHHHHHHHHHCCCCCeEEeeeeEECCeEEEeCCCceecChhHHHHHH
Confidence 457899999999999999988 777766 789999999999999999999999999999999999999999999999
Q ss_pred HHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC
Q psy2395 389 LIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY 467 (570)
Q Consensus 389 ~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~ 467 (570)
.++.... .++.+|||+|||+|++++.++.. + +++|+|+|+|+.+++.|++|+..++ ...+++|+++|+++.++
T Consensus 114 ~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~--l~~~v~~~~~D~~~~~~-- 187 (284)
T 1nv8_A 114 LALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEPFK-- 187 (284)
T ss_dssp HHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGGGG--
T ss_pred HHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECcchhhcc--
Confidence 9887643 35579999999999999999988 5 6899999999999999999998753 23359999999987554
Q ss_pred CCce---eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHH
Q psy2395 468 KKLF---NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLL 544 (570)
Q Consensus 468 ~~~f---D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll 544 (570)
++| |+|++||||++... .....+. |+|..|++++.+|+.+++.++. +.|+|||+++++++..+.+.+.+++
T Consensus 188 -~~f~~~D~IvsnPPyi~~~~-~l~~~v~-~ep~~al~~~~dgl~~~~~i~~---~~l~pgG~l~~e~~~~q~~~v~~~~ 261 (284)
T 1nv8_A 188 -EKFASIEMILSNPPYVKSSA-HLPKDVL-FEPPEALFGGEDGLDFYREFFG---RYDTSGKIVLMEIGEDQVEELKKIV 261 (284)
T ss_dssp -GGTTTCCEEEECCCCBCGGG-SCTTSCC-CSCHHHHBCTTTSCHHHHHHHH---HCCCTTCEEEEECCTTCHHHHTTTS
T ss_pred -cccCCCCEEEEcCCCCCccc-ccChhhc-cCcHHHhcCCCcHHHHHHHHHH---hcCCCCCEEEEEECchHHHHHHHHH
Confidence 478 99999999998776 4444444 9999999999999976666651 4889999999999999999999888
Q ss_pred HHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 545 FKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 545 ~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.+. .+++|++|.+|+++++.
T Consensus 262 ~~~-----~~~~D~~g~~R~~~~~~ 281 (284)
T 1nv8_A 262 SDT-----VFLKDSAGKYRFLLLNR 281 (284)
T ss_dssp TTC-----EEEECTTSSEEEEEEEC
T ss_pred HhC-----CeecccCCCceEEEEEE
Confidence 765 78999999999999864
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-27 Score=226.52 Aligned_cols=195 Identities=29% Similarity=0.463 Sum_probs=138.2
Q ss_pred eeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc
Q psy2395 370 LNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT 447 (570)
Q Consensus 370 ~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~ 447 (570)
|.+++++|+|+++++.++++++..+. .++.+|||+|||+|.++..+++.++ +.+|+|+|+|+.+++.|++|+..+
T Consensus 1 f~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~-- 77 (215)
T 4dzr_A 1 FEVGPDCLIPRPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERF-- 77 (215)
T ss_dssp CBCSGGGGSCCHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC----------------
T ss_pred CcCCCCccCCCccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHh--
Confidence 56789999999999999999988754 4678999999999999999999875 579999999999999999999864
Q ss_pred cCCCCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCC-CccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 448 KYNIPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKG-DLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 448 ~~~~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~-~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
+.+++++++|+.+.++. ..++||+|++||||+.......... ...|+|..++.++.++++.+..+++.+.++|+
T Consensus 78 --~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 155 (215)
T 4dzr_A 78 --GAVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLA 155 (215)
T ss_dssp -------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBC
T ss_pred --CCceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhc
Confidence 23789999999774432 1278999999999998776654444 44689999999999999999999999999999
Q ss_pred cCeE-EEEEEcCCCHHHHHHHHH--HCCCeeEEEEecCCCCceEEEEEe
Q psy2395 524 KNGL-LLIEHGYNQSNLVRKLLF--KYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 524 pgG~-l~~~~~~~~~~~l~~ll~--~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
|||+ ++++++..+.+.+.+++. +.||..+.+++|+.|..|++++++
T Consensus 156 pgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~ 204 (215)
T 4dzr_A 156 RGRAGVFLEVGHNQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTR 204 (215)
T ss_dssp SSSEEEEEECTTSCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEE
T ss_pred CCCeEEEEEECCccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEE
Confidence 9999 888889999999999999 999999999999999999999986
|
| >1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=186.18 Aligned_cols=70 Identities=29% Similarity=0.446 Sum_probs=66.5
Q ss_pred cccccCCCCeEEEEeeccCCCCcccccccceEEEE-ecCCc------------------------eEEEEeccccHHHHH
Q psy2395 213 EDININPADLRIDTYRASGAGGQHINKTDSAVRIT-HIPTG------------------------IVVQCQNDRSQHKNK 267 (570)
Q Consensus 213 ~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~-h~p~g------------------------i~~~~~~~rsq~~n~ 267 (570)
.++.|+++||+++|+|||||||||||||+|||+|+ |+|+| |+|+||++|||++||
T Consensus 13 ~~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr 92 (112)
T 1j26_A 13 ASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNL 92 (112)
T ss_dssp SCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHH
T ss_pred eEEecChHHeEEEEEECCCCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHH
Confidence 34889999999999999999999999999999998 99997 999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy2395 268 AFALKILLARIKDSK 282 (570)
Q Consensus 268 ~~a~~~l~~~l~~~~ 282 (570)
+.|+++|+++|+++.
T Consensus 93 ~~Al~rL~~~l~~a~ 107 (112)
T 1j26_A 93 AECLQKIRDMIAEAS 107 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999764
|
| >2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.4e-25 Score=186.12 Aligned_cols=69 Identities=36% Similarity=0.594 Sum_probs=66.1
Q ss_pred ccccCCCCeEEEEeeccCCCCcccccccceEEEEe------cC-----------------Cc-eEEEEeccccHHHHHHH
Q psy2395 214 DININPADLRIDTYRASGAGGQHINKTDSAVRITH------IP-----------------TG-IVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 214 ~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h------~p-----------------~g-i~~~~~~~rsq~~n~~~ 269 (570)
.+.|+++||+++|+|||||||||||||+|||+|+| +| || |+|+||++|||++||+.
T Consensus 7 ~i~I~~~dl~~~~~RssGpGGQnVNKv~SaV~L~~d~~~s~lP~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~ 86 (108)
T 2jva_A 7 NVHLPDAEIELTAIRAQGAGGQNVNKVSSAMHLRFDINASSLPPFYKERLLALNDSRITSDGVIVLKAQQYRTQEQNRAD 86 (108)
T ss_dssp SCEECGGGEEEEECCCTTCSSSSSCCCCCCEEEEEETTTSCCCHHHHHHHHTCSCTTBCTTCEEEEEECCSSSHHHHHHH
T ss_pred ccccChHHEEEEEEECCCCCCCCcCCCcceEEEEEEcccccCCHHHHHHHHHHhccccccCCcEEEEECCcCCHHHHHHH
Confidence 37899999999999999999999999999999999 99 88 99999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2395 270 ALKILLARIKDSK 282 (570)
Q Consensus 270 a~~~l~~~l~~~~ 282 (570)
|+++|+++|+++.
T Consensus 87 Al~rL~~~l~~a~ 99 (108)
T 2jva_A 87 ALLRLSELIVNAA 99 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc
Confidence 9999999999764
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=191.96 Aligned_cols=184 Identities=20% Similarity=0.256 Sum_probs=137.3
Q ss_pred ccccCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 363 KEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 363 ~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
..||+..|.+++++++|+++++.++ +....+++.+|||+||| +|.+++.+++.. +.+|+|+|+|+.+++.|++|
T Consensus 24 ~~~~~~~~~~~~~~~~p~~~~~~l~---~~~~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~ 98 (230)
T 3evz_A 24 KALFGLDIEYHPKGLVTTPISRYIF---LKTFLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRN 98 (230)
T ss_dssp HHHHCCCCCCCTTSCCCCHHHHHHH---HHTTCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHH
T ss_pred HHhcCCceecCCCeEeCCCchhhhH---hHhhcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHH
Confidence 3577888889999999999998773 22234577899999999 999999999875 47999999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
+..+ +.+++++++|+.......+++||+|++||||+..... ..++|..++.++..+.+.+..+++.+.++
T Consensus 99 ~~~~----~~~v~~~~~d~~~~~~~~~~~fD~I~~npp~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (230)
T 3evz_A 99 IERN----NSNVRLVKSNGGIIKGVVEGTFDVIFSAPPYYDKPLG------RVLTEREAIGGGKYGEEFSVKLLEEAFDH 168 (230)
T ss_dssp HHHT----TCCCEEEECSSCSSTTTCCSCEEEEEECCCCC---------------------CCSSSCHHHHHHHHHHGGG
T ss_pred HHHh----CCCcEEEeCCchhhhhcccCceeEEEECCCCcCCccc------cccChhhhhccCccchHHHHHHHHHHHHH
Confidence 9874 3379999999743222224789999999999876542 12567778888888999999999999999
Q ss_pred cccCeEEEEEEcCC--CHHHHHHHHHHCCCeeEEEEecCCCCc
Q psy2395 522 LVKNGLLLIEHGYN--QSNLVRKLLFKYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 522 LkpgG~l~~~~~~~--~~~~l~~ll~~~Gf~~i~~~~D~~g~~ 562 (570)
|+|||++++.++.. ....+.+.+.+.||....+ .-..|..
T Consensus 169 LkpgG~l~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~g~~ 210 (230)
T 3evz_A 169 LNPGGKVALYLPDKEKLLNVIKERGIKLGYSVKDI-KFKVGTR 210 (230)
T ss_dssp EEEEEEEEEEEESCHHHHHHHHHHHHHTTCEEEEE-EECCCC-
T ss_pred hCCCeEEEEEecccHhHHHHHHHHHHHcCCceEEE-EecCCCe
Confidence 99999999977653 5678889999999966544 3334433
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=195.07 Aligned_cols=203 Identities=18% Similarity=0.187 Sum_probs=144.0
Q ss_pred cccCeeeeecCCccccc----hhHHHHHHHHHhhcCC---CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPR----PETELLVDLIVKKTFE---KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr----~~t~~l~~~~~~~~~~---~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~ 436 (570)
.|++..|.+++++|+|+ ++++.++..++..... ++.+|||+|||+|.+++.++...+ +.+|+|+|+|+.|++
T Consensus 25 ~~~~~~~~~~~~~~~p~~~~r~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~ 103 (254)
T 2h00_A 25 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFN 103 (254)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHH
T ss_pred HcCCeeeecCccccCCCccchHHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHH
Confidence 56788888999999998 7777777777654332 467999999999999999988764 479999999999999
Q ss_pred HHHHHHHhhcccCCCCEEEEEccccc----ccccC-CCceeEEEECCCCCCCC-CcccC--CCCccccccccccccC---
Q psy2395 437 IAKKNAKKKLTKYNIPIKFIKSNWYN----NLQNY-KKLFNIIVANPPYIPKG-DIHLN--KGDLRFEPINALTDYS--- 505 (570)
Q Consensus 437 ~A~~n~~~~~~~~~~~v~~~~~D~~~----~l~~~-~~~fD~Iv~NPPy~~~~-~~~~~--~~~~~~ep~~al~~~~--- 505 (570)
.|++|+..++ ...+++++++|+.+ .++.. +++||+|++||||+... +.... ..+..++|..++++..
T Consensus 104 ~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (254)
T 2h00_A 104 YAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 181 (254)
T ss_dssp HHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTT
T ss_pred HHHHHHHHcC--CCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHH
Confidence 9999998753 23359999999754 22211 15899999999998654 21111 2233467777776543
Q ss_pred ----CChHHHHHHHHHHhhccccCeEEEEEEcCCCH-HHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 506 ----NGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS-NLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 506 ----~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
+++.++..++..+.++|+++|++++.++.... ..+.++++++||..+++.....|.....+.-|
T Consensus 182 LkpgG~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~g~~~~~~~~w 250 (254)
T 2h00_A 182 MAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALAW 250 (254)
T ss_dssp HHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEETTEEEEEEEE
T ss_pred EecCCEEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEecCCceEEEEEe
Confidence 56778888888888999999999988887655 88899999999999988877777654444334
|
| >4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-23 Score=182.14 Aligned_cols=70 Identities=43% Similarity=0.655 Sum_probs=66.1
Q ss_pred ccccCCCCeEEEEeeccCCCCcccccccceEEEE------ecCC-----------------c-eEEEEeccccHHHHHHH
Q psy2395 214 DININPADLRIDTYRASGAGGQHINKTDSAVRIT------HIPT-----------------G-IVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 214 ~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~------h~p~-----------------g-i~~~~~~~rsq~~n~~~ 269 (570)
++.|+++||+++|+|||||||||||||+|+|+|+ |+|+ | |+|+||++|||++||+.
T Consensus 7 ~i~I~~~el~~~~~RssGpGGQnVNKv~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~ 86 (140)
T 4dh9_Y 7 HVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREA 86 (140)
T ss_dssp SSCCCTTCSEEEEECCCSSSSHHHHTTCCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHH
T ss_pred CCccChHHeEEEEEECCCCCCCccccccceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHH
Confidence 3889999999999999999999999999999999 7997 4 99999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2395 270 ALKILLARIKDSKL 283 (570)
Q Consensus 270 a~~~l~~~l~~~~~ 283 (570)
|+++|.++|+++..
T Consensus 87 A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 87 ALARLVAMIKELTT 100 (140)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999997753
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=169.03 Aligned_cols=158 Identities=21% Similarity=0.232 Sum_probs=126.7
Q ss_pred CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE
Q psy2395 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK 454 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~ 454 (570)
.+|+|+|+++.+++.+.. ...++.+|||+|||+|.++..+++.+ +|+|+|+|+.|++. . .+++
T Consensus 2 ~v~~P~~~~~~l~~~l~~-~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-----~-------~~~~ 64 (170)
T 3q87_B 2 DWYEPGEDTYTLMDALER-EGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-----H-------RGGN 64 (170)
T ss_dssp CSCCCCHHHHHHHHHHHH-HTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-----C-------SSSC
T ss_pred cccCcCccHHHHHHHHHh-hcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-----c-------cCCe
Confidence 478999999999998533 22356799999999999999998643 89999999999987 1 1378
Q ss_pred EEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-c
Q psy2395 455 FIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-G 533 (570)
Q Consensus 455 ~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~ 533 (570)
++++|+.+..+. ++||+|++||||++..+.. .+.++.++...+..+++ .| |||++++.. +
T Consensus 65 ~~~~d~~~~~~~--~~fD~i~~n~~~~~~~~~~------------~~~~~~~~~~~~~~~~~----~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 65 LVRADLLCSINQ--ESVDVVVFNPPYVPDTDDP------------IIGGGYLGREVIDRFVD----AV-TVGMLYLLVIE 125 (170)
T ss_dssp EEECSTTTTBCG--GGCSEEEECCCCBTTCCCT------------TTBCCGGGCHHHHHHHH----HC-CSSEEEEEEEG
T ss_pred EEECChhhhccc--CCCCEEEECCCCccCCccc------------cccCCcchHHHHHHHHh----hC-CCCEEEEEEec
Confidence 999999875443 7899999999998754321 14455566666665555 45 999998855 5
Q ss_pred CCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 534 YNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 534 ~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
..+.+.+.+++++.||..+.+..+..+.+|++..+
T Consensus 126 ~~~~~~l~~~l~~~gf~~~~~~~~~~~~e~~~~~~ 160 (170)
T 3q87_B 126 ANRPKEVLARLEERGYGTRILKVRKILGETVYIIK 160 (170)
T ss_dssp GGCHHHHHHHHHHTTCEEEEEEEEECSSSEEEEEE
T ss_pred CCCHHHHHHHHHHCCCcEEEEEeeccCCceEEEEE
Confidence 67889999999999999999999999999998875
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.5e-18 Score=181.25 Aligned_cols=198 Identities=14% Similarity=0.187 Sum_probs=154.6
Q ss_pred ccCcceeeechhhhchHHHHHHHHHHHHHHh-------cCCCceeecCccccc---CeeeeecCCcccc--chhHHHHHH
Q psy2395 321 RLSDVELIINNEKKLHKQEINILNKLIQRRI-------LGEPIAYIIGKKEFY---GLVLNITSDVLIP--RPETELLVD 388 (570)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~-------~~~p~~~i~g~~~f~---~~~~~v~~~~~~p--r~~t~~l~~ 388 (570)
+.+...+++....+++..+.+.+..+..++. .+.|++|+.|...|+ +..|.++|+.|+| ++.++.+++
T Consensus 197 ~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~g~~~~~~~~~f~q~n~~~~e~l~~ 276 (433)
T 1uwv_A 197 ATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA 276 (433)
T ss_dssp ETTEEEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEESSSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHH
T ss_pred eCCCcEEEEEecCCCCHHHHHHHHHHhhcccEEEEEECCCCeEEEEeCCCcEEEECCEEEEECcccccccCHHHHHHHHH
Confidence 3455667776677788777888888887764 567889999999888 9999999999999 468999999
Q ss_pred HHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--
Q psy2395 389 LIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-- 465 (570)
Q Consensus 389 ~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-- 465 (570)
.++..+. .++.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|++|+..++. .+++|+++|+.+.+.
T Consensus 277 ~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~---~~v~f~~~d~~~~l~~~ 350 (433)
T 1uwv_A 277 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGL---QNVTFYHENLEEDVTKQ 350 (433)
T ss_dssp HHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCTTSCCSSS
T ss_pred HHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEECCHHHHhhhh
Confidence 8887653 45679999999999999999965 36999999999999999999987532 269999999977543
Q ss_pred -cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHH
Q psy2395 466 -NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLL 544 (570)
Q Consensus 466 -~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll 544 (570)
...++||+|++||||... ..+++.+. .++|++++++.+.+.....-...|
T Consensus 351 ~~~~~~fD~Vv~dPPr~g~----------------------------~~~~~~l~-~~~p~~ivyvsc~p~tlard~~~l 401 (433)
T 1uwv_A 351 PWAKNGFDKVLLDPARAGA----------------------------AGVMQQII-KLEPIRIVYVSCNPATLARDSEAL 401 (433)
T ss_dssp GGGTTCCSEEEECCCTTCC----------------------------HHHHHHHH-HHCCSEEEEEESCHHHHHHHHHHH
T ss_pred hhhcCCCCEEEECCCCccH----------------------------HHHHHHHH-hcCCCeEEEEECChHHHHhhHHHH
Confidence 223689999999998632 12333332 378999988877655555555667
Q ss_pred HHCCCeeEE
Q psy2395 545 FKYGFSDIK 553 (570)
Q Consensus 545 ~~~Gf~~i~ 553 (570)
.+.||....
T Consensus 402 ~~~Gy~~~~ 410 (433)
T 1uwv_A 402 LKAGYTIAR 410 (433)
T ss_dssp HHTTCEEEE
T ss_pred HHCCcEEEE
Confidence 778998766
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-18 Score=170.47 Aligned_cols=178 Identities=17% Similarity=0.250 Sum_probs=127.9
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHhhcCC-CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVKKTFE-KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~-~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
.++.+..++..|.+..++..+..++ ... ++.+|||+|||+|.+++.++..++ .+|+|+|+++.+++.|++|+..
T Consensus 20 ~~~~i~q~~~~~~~~~d~~ll~~~~---~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~ 94 (259)
T 3lpm_A 20 ENLRIIQSPSVFSFSIDAVLLAKFS---YLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAY 94 (259)
T ss_dssp TTEEEEEBTTTBCCCHHHHHHHHHC---CCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCccCcHHHHHHHHHh---cCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHH
Confidence 4667777888887776666555543 234 578999999999999999998763 4999999999999999999987
Q ss_pred hcccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
++ ...+++++++|+.+..... .++||+|++||||+.......... .+..+.. .......+..+++.+.++|+
T Consensus 95 ~~--~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~----~~~~~~a-~~~~~~~~~~~l~~~~~~Lk 167 (259)
T 3lpm_A 95 NQ--LEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNT----NEHFRIA-RHEVMCTLEDTIRVAASLLK 167 (259)
T ss_dssp TT--CTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC----------------------------HHHHHHHHHHHHHEE
T ss_pred CC--CcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCC----chHHHhh-hccccCCHHHHHHHHHHHcc
Confidence 53 3346999999997754322 478999999999986522111110 0111111 11223456789999999999
Q ss_pred cCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 524 KNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 524 pgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
|||++++.++......+...+.+.||....+.
T Consensus 168 pgG~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 199 (259)
T 3lpm_A 168 QGGKANFVHRPERLLDIIDIMRKYRLEPKRIQ 199 (259)
T ss_dssp EEEEEEEEECTTTHHHHHHHHHHTTEEEEEEE
T ss_pred CCcEEEEEEcHHHHHHHHHHHHHCCCceEEEE
Confidence 99999999999999999999999999875543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=158.57 Aligned_cols=185 Identities=15% Similarity=0.139 Sum_probs=134.9
Q ss_pred hhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcC----CCCCEEEEECC
Q psy2395 331 NEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTF----EKKIKLLEMGT 406 (570)
Q Consensus 331 ~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~----~~~~~VLDlGc 406 (570)
...+++.++.+.+..++.++.. +..+++..+ .+++++.+++.++..+. .++.+|||+||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiG~ 74 (207)
T 1jsx_A 12 AGISLTDHQKNQLIAYVNMLHK---------WNKAYNLTS--------VRDPNEMLVRHILDSIVVAPYLQGERFIDVGT 74 (207)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHH---------HC--------------------CHHHHHHHHHHHHGGGCCSSEEEEETC
T ss_pred cCCCCCHHHHHHHHHHHHHHHH---------hcccccccc--------cCCHHHHHHHHHHhhhhhhhhcCCCeEEEECC
Confidence 3456778888888888877765 112222221 15566666665554322 13679999999
Q ss_pred cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCc
Q psy2395 407 GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDI 486 (570)
Q Consensus 407 GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~ 486 (570)
|+|.++..++...+ +.+|+|+|+|+.+++.|++|+..++ -.+++++++|+.+..+ .++||+|++|..
T Consensus 75 G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~--~~~~D~i~~~~~------- 141 (207)
T 1jsx_A 75 GPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFPS--EPPFDGVISRAF------- 141 (207)
T ss_dssp TTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSCC--CSCEEEEECSCS-------
T ss_pred CCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEecchhhCCc--cCCcCEEEEecc-------
Confidence 99999999998865 5899999999999999999998742 1249999999976442 368999999631
Q ss_pred ccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEE----EEecCCCCc
Q psy2395 487 HLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK----SWRDLSGIE 562 (570)
Q Consensus 487 ~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~----~~~D~~g~~ 562 (570)
..+..++..+.++|+|||++++..+..+.+.+.+++. ||..+. .+++..+..
T Consensus 142 ----------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~ 197 (207)
T 1jsx_A 142 ----------------------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLPE--EYQVESVVKLQVPALDGER 197 (207)
T ss_dssp ----------------------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSCT--TEEEEEEEEEECC--CCEE
T ss_pred ----------------------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHHhc--CCceeeeeeeccCCCCCce
Confidence 1246889999999999999999999989888888776 998877 667888999
Q ss_pred eEEEEEe
Q psy2395 563 RVTQGKI 569 (570)
Q Consensus 563 R~~~~~~ 569 (570)
++++.++
T Consensus 198 ~~~~~~k 204 (207)
T 1jsx_A 198 HLVVIKA 204 (207)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9888775
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=165.10 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=110.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh---hcccCCCCEEEEEcccccccc------c
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK---KLTKYNIPIKFIKSNWYNNLQ------N 466 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~---~~~~~~~~v~~~~~D~~~~l~------~ 466 (570)
.++.+|||+|||+|.+++.++...+ ..+|+|+|+++.+++.|++|+.. ++ ...+++++++|+.+..+ .
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~--l~~~v~~~~~D~~~~~~~~~~~~~ 111 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAA--FSARIEVLEADVTLRAKARVEAGL 111 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTT--TGGGEEEEECCTTCCHHHHHHTTC
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCC--CcceEEEEeCCHHHHhhhhhhhcc
Confidence 3567999999999999999999875 58999999999999999999876 42 23369999999977532 2
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHH
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFK 546 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~ 546 (570)
..++||+|++||||+.... ...+... ...++.... ..+..+++.+.++|+|||+++++++......+.+.+.+
T Consensus 112 ~~~~fD~Vv~nPPy~~~~~-~~~~~~~---~~~a~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~ 184 (260)
T 2ozv_A 112 PDEHFHHVIMNPPYNDAGD-RRTPDAL---KAEAHAMTE---GLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAACGS 184 (260)
T ss_dssp CTTCEEEEEECCCC----------------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGHHHHHHHHTT
T ss_pred CCCCcCEEEECCCCcCCCC-CCCcCHH---HHHHhhcCc---CCHHHHHHHHHHHcCCCCEEEEEEcHHHHHHHHHHHHh
Confidence 2468999999999987531 1111111 012222222 23578999999999999999999998888888888887
Q ss_pred CCCeeEEEEecCCCC
Q psy2395 547 YGFSDIKSWRDLSGI 561 (570)
Q Consensus 547 ~Gf~~i~~~~D~~g~ 561 (570)
. |..+.+.......
T Consensus 185 ~-~~~~~i~~v~~~~ 198 (260)
T 2ozv_A 185 R-FGGLEITLIHPRP 198 (260)
T ss_dssp T-EEEEEEEEEESST
T ss_pred c-CCceEEEEEcCCC
Confidence 5 8777766655443
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=154.26 Aligned_cols=140 Identities=11% Similarity=0.171 Sum_probs=107.5
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhc----CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKT----FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~----~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.|.+..+.+.+ ..++|.+..+.+.+...+ ..++.+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|+
T Consensus 9 ~~~g~~l~~~~--~~~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~--~~~v~~vD~~~~~~~~a~ 84 (189)
T 3p9n_A 9 VAGGRRIAVPP--RGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRG--AASVLFVESDQRSAAVIA 84 (189)
T ss_dssp TTTTCEEECCS--CCC---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEECCHHHHHHHH
T ss_pred ccCCcEecCCC--CCCccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCC--CCeEEEEECCHHHHHHHH
Confidence 56788888777 566776666666555443 2467899999999999999887754 468999999999999999
Q ss_pred HHHHhhcccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
+|+..++. .+++++++|+.+..... .++||+|++||||... ...+..++..+
T Consensus 85 ~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~~~~------------------------~~~~~~~l~~~ 137 (189)
T 3p9n_A 85 RNIEALGL---SGATLRRGAVAAVVAAGTTSPVDLVLADPPYNVD------------------------SADVDAILAAL 137 (189)
T ss_dssp HHHHHHTC---SCEEEEESCHHHHHHHCCSSCCSEEEECCCTTSC------------------------HHHHHHHHHHH
T ss_pred HHHHHcCC---CceEEEEccHHHHHhhccCCCccEEEECCCCCcc------------------------hhhHHHHHHHH
Confidence 99987532 46999999997754322 4789999999998732 13457888888
Q ss_pred hh--ccccCeEEEEEEcC
Q psy2395 519 SK--YLVKNGLLLIEHGY 534 (570)
Q Consensus 519 ~~--~LkpgG~l~~~~~~ 534 (570)
.+ +|+|||.++++...
T Consensus 138 ~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 138 GTNGWTREGTVAVVERAT 155 (189)
T ss_dssp HHSSSCCTTCEEEEEEET
T ss_pred HhcCccCCCeEEEEEecC
Confidence 88 99999999998754
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=162.88 Aligned_cols=174 Identities=13% Similarity=0.112 Sum_probs=126.6
Q ss_pred hHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHH
Q psy2395 336 HKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAI 415 (570)
Q Consensus 336 ~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~l 415 (570)
..+++..+..++.++..+.|++|+++..+||...|..+..++.|.+ ..++.+|||+|||+|.+++.+
T Consensus 32 ~~~~~~~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~~~-------------~~~~~~vLDiG~G~G~~~i~l 98 (249)
T 3g89_A 32 HLEAFSRLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRLPL-------------WQGPLRVLDLGTGAGFPGLPL 98 (249)
T ss_dssp GHHHHHHHHHHHHHC----------CHHHHHHHHHHHHHGGGGSSC-------------CCSSCEEEEETCTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcccc-------------cCCCCEEEEEcCCCCHHHHHH
Confidence 3566788888899999999999999999998877766555554432 235779999999999999999
Q ss_pred HHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeEEEECCCCCCCCCcccCCCCc
Q psy2395 416 AIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNIIVANPPYIPKGDIHLNKGDL 493 (570)
Q Consensus 416 a~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~Iv~NPPy~~~~~~~~~~~~~ 493 (570)
+...+ +.+|+|+|+|+.+++.|++|+..++. .+++++++|+.+... ...++||+|+++--
T Consensus 99 a~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l---~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a~-------------- 160 (249)
T 3g89_A 99 KIVRP-ELELVLVDATRKKVAFVERAIEVLGL---KGARALWGRAEVLAREAGHREAYARAVARAV-------------- 160 (249)
T ss_dssp HHHCT-TCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEECCHHHHTTSTTTTTCEEEEEEESS--------------
T ss_pred HHHCC-CCEEEEEECCHHHHHHHHHHHHHhCC---CceEEEECcHHHhhcccccCCCceEEEECCc--------------
Confidence 98875 68999999999999999999987532 249999999966432 12368999999420
Q ss_pred cccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHH---HHHHHHHCCCeeEEEE
Q psy2395 494 RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL---VRKLLFKYGFSDIKSW 555 (570)
Q Consensus 494 ~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~---l~~ll~~~Gf~~i~~~ 555 (570)
..+..+++.+.++|+|||++++..+....++ +...+...||....+.
T Consensus 161 ---------------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~~ 210 (249)
T 3g89_A 161 ---------------APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEVL 210 (249)
T ss_dssp ---------------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEEE
T ss_pred ---------------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEEE
Confidence 1236889999999999999998877655444 4566778899876654
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=154.32 Aligned_cols=147 Identities=21% Similarity=0.236 Sum_probs=113.3
Q ss_pred eeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHH
Q psy2395 357 AYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434 (570)
Q Consensus 357 ~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~a 434 (570)
..+.| .|++..+.+.++. .++|.++.+.+.+...+. .++.+|||+|||+|.+++.++... ..+|+|+|+|+.+
T Consensus 5 ~i~~g--~~~~~~~~~~~~~-~~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~--~~~v~~vD~~~~~ 79 (187)
T 2fhp_A 5 RVISG--EYGGRRLKALDGD-NTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAA 79 (187)
T ss_dssp BCCSS--TTTTCBCCCCCCC-SSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHH
T ss_pred EEeec--cccCccccCCCCC-CcCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC--CCEEEEEECCHHH
Confidence 34445 7888999888776 788888888888877653 367799999999999999988753 4799999999999
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHH
Q psy2395 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI 511 (570)
Q Consensus 435 l~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~ 511 (570)
++.|++|+..++ ...+++++++|+.+..+. ..++||+|++||||.... .
T Consensus 80 ~~~a~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~--------------------------~ 131 (187)
T 2fhp_A 80 LKVIKENIAITK--EPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE--------------------------I 131 (187)
T ss_dssp HHHHHHHHHHHT--CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC--------------------------H
T ss_pred HHHHHHHHHHhC--CCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchh--------------------------H
Confidence 999999998752 223699999999774431 147899999999986221 1
Q ss_pred HHHHHHH--hhccccCeEEEEEEcCCC
Q psy2395 512 KEIVKNA--SKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 512 ~~~l~~~--~~~LkpgG~l~~~~~~~~ 536 (570)
..++..+ .++|+|||++++.++...
T Consensus 132 ~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 132 VSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred HHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 3333444 889999999999876543
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-16 Score=149.24 Aligned_cols=171 Identities=24% Similarity=0.355 Sum_probs=128.5
Q ss_pred ceeecCcccccCeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCH
Q psy2395 356 IAYIIGKKEFYGLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISK 432 (570)
Q Consensus 356 ~~~i~g~~~f~~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~ 432 (570)
..++.+...-....+...+++|.|. +.++.+++.+. ..++.+|||+|||+|.++..++.. +.+|+|+|+|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~ 84 (194)
T 1dus_A 11 VKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVV---VDKDDDILDLGCGYGVIGIALADE---VKSTTMADINR 84 (194)
T ss_dssp EEEEEEEETTEEEEEEEETTSTTTTSCCHHHHHHHHHCC---CCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCH
T ss_pred ccEEeeecCCCceEEEeCCCcCCccccchHHHHHHHHcc---cCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCH
Confidence 3455444444455666778899888 56666665541 246779999999999999999876 36999999999
Q ss_pred HHHHHHHHHHHhhcccCCC-CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHH
Q psy2395 433 FALKIAKKNAKKKLTKYNI-PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI 511 (570)
Q Consensus 433 ~al~~A~~n~~~~~~~~~~-~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~ 511 (570)
.+++.|++++..++ ... +++++++|+.+..+ .++||+|++||||... ....
T Consensus 85 ~~~~~a~~~~~~~~--~~~~~~~~~~~d~~~~~~--~~~~D~v~~~~~~~~~------------------------~~~~ 136 (194)
T 1dus_A 85 RAIKLAKENIKLNN--LDNYDIRVVHSDLYENVK--DRKYNKIITNPPIRAG------------------------KEVL 136 (194)
T ss_dssp HHHHHHHHHHHHTT--CTTSCEEEEECSTTTTCT--TSCEEEEEECCCSTTC------------------------HHHH
T ss_pred HHHHHHHHHHHHcC--CCccceEEEECchhcccc--cCCceEEEECCCcccc------------------------hhHH
Confidence 99999999998642 111 39999999977544 4689999999998631 2355
Q ss_pred HHHHHHHhhccccCeEEEEEEcCCC-HHHHHHHHHHCCCeeEEEEecCCCC
Q psy2395 512 KEIVKNASKYLVKNGLLLIEHGYNQ-SNLVRKLLFKYGFSDIKSWRDLSGI 561 (570)
Q Consensus 512 ~~~l~~~~~~LkpgG~l~~~~~~~~-~~~l~~ll~~~Gf~~i~~~~D~~g~ 561 (570)
..+++.+.++|+|||.+++..+..+ ...+.+.+.+. |..++++.+..+.
T Consensus 137 ~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~ 186 (194)
T 1dus_A 137 HRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV-FGNVETVTIKGGY 186 (194)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH-HSCCEEEEEETTE
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH-hcceEEEecCCcE
Confidence 7899999999999999999876654 44477888776 6667777666554
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=167.54 Aligned_cols=193 Identities=11% Similarity=0.131 Sum_probs=121.4
Q ss_pred eeeechhhhchHHHHHHHHHHHHHH---hcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcC-CCCCEE
Q psy2395 326 ELIINNEKKLHKQEINILNKLIQRR---ILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTF-EKKIKL 401 (570)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~~~~~~~r---~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~-~~~~~V 401 (570)
.++.+++.+++.++...+..++.++ ..++|++|++|...||+..+. +.++.+++++..... .++.+|
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~g~~~~~g~~~~---------~~~~~l~~~l~~~~~~~~~~~v 83 (281)
T 3bzb_A 13 GLPGTPPDFYRERQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVW---------SGARALADTLCWQPELIAGKTV 83 (281)
T ss_dssp ----------------CEEEEECCSSCC-CCEEEEECC--------------------CHHHHHHHHHHHCGGGTTTCEE
T ss_pred cHhhCCCccCChHHHHHHHHHHhhccccccCCeEEEECCCCCCCCceee---------cHHHHHHHHHHhcchhcCCCeE
Confidence 4666777778888777777777777 677899999999999987765 678888888876532 356799
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeC-CHHHHHHHHHHHHhhcc---cCC----CCEEEEEcccccc---ccc--CC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDI-SKFALKIAKKNAKKKLT---KYN----IPIKFIKSNWYNN---LQN--YK 468 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDi-s~~al~~A~~n~~~~~~---~~~----~~v~~~~~D~~~~---l~~--~~ 468 (570)
||+|||+|.+++.+++.+ ..+|+|+|+ |+.+++.|++|+..|.. ... .++++...|+.+. +.. ..
T Consensus 84 LDlG~G~G~~~~~~a~~~--~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 161 (281)
T 3bzb_A 84 CELGAGAGLVSIVAFLAG--ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRCTGL 161 (281)
T ss_dssp EETTCTTSHHHHHHHHTT--CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHHHSC
T ss_pred EEecccccHHHHHHHHcC--CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhhccC
Confidence 999999999999998764 359999999 89999999999943210 011 2578886665432 211 24
Q ss_pred CceeEEEE-CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc---c--CeEEEEEEcCCC------
Q psy2395 469 KLFNIIVA-NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV---K--NGLLLIEHGYNQ------ 536 (570)
Q Consensus 469 ~~fD~Iv~-NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk---p--gG~l~~~~~~~~------ 536 (570)
++||+|++ +++|+. ..+..+++.+.++|+ | ||.+++.+....
T Consensus 162 ~~fD~Ii~~dvl~~~--------------------------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~~~~~~ 215 (281)
T 3bzb_A 162 QRFQVVLLADLLSFH--------------------------QAHDALLRSVKMLLALPANDPTAVALVTFTHHRPHLAER 215 (281)
T ss_dssp SSBSEEEEESCCSCG--------------------------GGHHHHHHHHHHHBCCTTTCTTCEEEEEECC--------
T ss_pred CCCCEEEEeCcccCh--------------------------HHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeecccchh
Confidence 68999997 666642 135788899999999 9 999877654422
Q ss_pred HHHHHHHHHHCC-CeeEEEE
Q psy2395 537 SNLVRKLLFKYG-FSDIKSW 555 (570)
Q Consensus 537 ~~~l~~ll~~~G-f~~i~~~ 555 (570)
...+.+.+.+.| |....+.
T Consensus 216 ~~~~~~~l~~~G~f~v~~~~ 235 (281)
T 3bzb_A 216 DLAFFRLVNADGALIAEPWL 235 (281)
T ss_dssp CTHHHHHHHHSTTEEEEEEE
T ss_pred HHHHHHHHHhcCCEEEEEec
Confidence 345667888999 9887664
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=152.29 Aligned_cols=164 Identities=17% Similarity=0.122 Sum_probs=120.8
Q ss_pred cCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 373 TSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 373 ~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
.+.+++|+|++. ..++. .....++.+|||+|||+|.+++.+++..+ +.+|+|+|+|+.+++.|++|+..++. .+
T Consensus 19 ~~~~~~~~p~~~-~~~~~-~~f~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~---~~ 92 (214)
T 1yzh_A 19 NPQYVVLNPLEA-KAKWR-DLFGNDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV---PN 92 (214)
T ss_dssp CTTTEECCGGGT-TTTHH-HHHTSCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC---SS
T ss_pred CCCEEecChhhc-ccCHH-HHcCCCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC---CC
Confidence 455677777642 22222 22234577999999999999999999876 68999999999999999999987531 46
Q ss_pred EEEEEcccccccc-cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 453 IKFIKSNWYNNLQ-NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 453 v~~~~~D~~~~l~-~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+.++++|+.+... ...++||+|++|+|-... ..+|+++. ..+..+++.+.++|+|||.+++.
T Consensus 93 v~~~~~d~~~~~~~~~~~~~D~i~~~~~~~~~--------~~~~~~~~---------~~~~~~l~~~~~~LkpgG~l~~~ 155 (214)
T 1yzh_A 93 IKLLWVDGSDLTDYFEDGEIDRLYLNFSDPWP--------KKRHEKRR---------LTYKTFLDTFKRILPENGEIHFK 155 (214)
T ss_dssp EEEEECCSSCGGGTSCTTCCSEEEEESCCCCC--------SGGGGGGS---------TTSHHHHHHHHHHSCTTCEEEEE
T ss_pred EEEEeCCHHHHHhhcCCCCCCEEEEECCCCcc--------ccchhhhc---------cCCHHHHHHHHHHcCCCcEEEEE
Confidence 9999999976321 224689999999763211 11222221 12468899999999999999998
Q ss_pred EcC-CCHHHHHHHHHHCCCeeEEEEecCC
Q psy2395 532 HGY-NQSNLVRKLLFKYGFSDIKSWRDLS 559 (570)
Q Consensus 532 ~~~-~~~~~l~~ll~~~Gf~~i~~~~D~~ 559 (570)
+.. .....+.+.+.+.||..+.+..|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~g~~~~~~~~d~~ 184 (214)
T 1yzh_A 156 TDNRGLFEYSLVSFSQYGMKLNGVWLDLH 184 (214)
T ss_dssp ESCHHHHHHHHHHHHHHTCEEEEEESSGG
T ss_pred eCCHHHHHHHHHHHHHCCCeeeecccccc
Confidence 855 4466778889999999998888764
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=166.42 Aligned_cols=201 Identities=17% Similarity=0.187 Sum_probs=138.3
Q ss_pred hchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhhc-CCCCCEEEEECCcccHHH
Q psy2395 334 KLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKT-FEKKIKLLEMGTGSGAIA 412 (570)
Q Consensus 334 ~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~ 412 (570)
.++.+.+..+.+.+.++..+.|.++ ..+|+|+.....+...+.... ..++.+|||+|||||.++
T Consensus 81 ~~~~~~~g~~ye~~~~~~~~~~~~~---------------g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l 145 (344)
T 2f8l_A 81 NFSNEEIRKGLQLALLKGMKHGIQV---------------NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLL 145 (344)
T ss_dssp GSCHHHHHHHHHHHHHHHTSSSCCG---------------GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHH
T ss_pred cCChhHHHHHHHHHHHHHhhccccc---------------CcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHH
Confidence 4456666666666666665555544 234678777666555443221 235679999999999999
Q ss_pred HHHHHhcCCC----cEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCccc
Q psy2395 413 IAIAIYSKNK----IEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHL 488 (570)
Q Consensus 413 l~la~~~~~~----~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~ 488 (570)
+.+++..+.. .+++|+|+++.+++.|+.|+..+ +.++.++++|.+.... ..+||+|++||||.......
T Consensus 146 ~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~----g~~~~i~~~D~l~~~~--~~~fD~Ii~NPPfg~~~~~~- 218 (344)
T 2f8l_A 146 TTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ----RQKMTLLHQDGLANLL--VDPVDVVISDLPVGYYPDDE- 218 (344)
T ss_dssp HHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----TCCCEEEESCTTSCCC--CCCEEEEEEECCCSEESCHH-
T ss_pred HHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC----CCCceEEECCCCCccc--cCCccEEEECCCCCCcCchh-
Confidence 9998876422 78999999999999999999864 3368999999877443 36899999999974321110
Q ss_pred CCCCccccccccccccCCChHH-HHHHHHHHhhccccCeEEEEEE-----cCCCHHHHHHHHHHCCCee--EEEEecCCC
Q psy2395 489 NKGDLRFEPINALTDYSNGLSS-IKEIVKNASKYLVKNGLLLIEH-----GYNQSNLVRKLLFKYGFSD--IKSWRDLSG 560 (570)
Q Consensus 489 ~~~~~~~ep~~al~~~~~gl~~-~~~~l~~~~~~LkpgG~l~~~~-----~~~~~~~l~~ll~~~Gf~~--i~~~~D~~g 560 (570)
...+|+|. ..+|... ...++..+.++|+|||++++++ ...+...+++++.+.|+.. +..-.++.+
T Consensus 219 --~~~~~~~~-----~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~~~~~~~~~~ir~~l~~~~~~~~ii~lp~~~F~ 291 (344)
T 2f8l_A 219 --NAKTFELC-----REEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPETLFK 291 (344)
T ss_dssp --HHTTSTTC-----CSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHHEEEEEEEECCGGGSC
T ss_pred --hhhhcccc-----CCCCcchHHHHHHHHHHHHhCCCCEEEEEECchhcCCchHHHHHHHHHhCCeEEEeeeCChhhcc
Confidence 01234432 1233333 3468999999999999999988 4466788999998888743 444556666
Q ss_pred Cce
Q psy2395 561 IER 563 (570)
Q Consensus 561 ~~R 563 (570)
..+
T Consensus 292 ~~~ 294 (344)
T 2f8l_A 292 SEQ 294 (344)
T ss_dssp C-C
T ss_pred CCC
Confidence 554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=160.09 Aligned_cols=173 Identities=16% Similarity=0.106 Sum_probs=133.7
Q ss_pred CCceeecCcccccCeeeeecCC--ccccchhHHHHHHHHH---------------hh-cCCCCCEEEEECCcccHHHHHH
Q psy2395 354 EPIAYIIGKKEFYGLVLNITSD--VLIPRPETELLVDLIV---------------KK-TFEKKIKLLEMGTGSGAIAIAI 415 (570)
Q Consensus 354 ~p~~~i~g~~~f~~~~~~v~~~--~~~pr~~t~~l~~~~~---------------~~-~~~~~~~VLDlGcGtG~i~l~l 415 (570)
.|..++.|. +++..+.+.++ +++++|.++.+.+.+. .. ...++.+|||+|||+|.+++.+
T Consensus 53 ~~~~~i~g~--~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l 130 (277)
T 1o54_A 53 IDLNEVFEK--GPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVL 130 (277)
T ss_dssp EEHHHHTTS--CTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHH
T ss_pred EEHHHhcCC--CCCcEEEEcCCcEEEEeCCCHHHHHhhccccCCccCHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHH
Confidence 344555554 56778888777 7888988887765321 11 1245779999999999999999
Q ss_pred HHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccc
Q psy2395 416 AIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRF 495 (570)
Q Consensus 416 a~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ 495 (570)
++...+..+|+++|+|+.+++.|++|+..++ ...+++++.+|+.+.++ .++||+|++|||..
T Consensus 131 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~~D~V~~~~~~~-------------- 192 (277)
T 1o54_A 131 ARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEGFD--EKDVDALFLDVPDP-------------- 192 (277)
T ss_dssp HHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGCCS--CCSEEEEEECCSCG--------------
T ss_pred HHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCHHHccc--CCccCEEEECCcCH--------------
Confidence 9883335799999999999999999998642 22369999999977643 36899999998742
Q ss_pred cccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeEEEEecCCCCc
Q psy2395 496 EPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 496 ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~~~~D~~g~~ 562 (570)
..+++.+.+.|+|||++++..+. .+...+.+.+.+.||..++++.++.+..
T Consensus 193 ----------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~gf~~~~~~~~~~~~~ 244 (277)
T 1o54_A 193 ----------------WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPY 244 (277)
T ss_dssp ----------------GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEEEECCCCCCE
T ss_pred ----------------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCceeEEEEEeeeee
Confidence 24567788899999999998875 4677888889999999999988876653
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-17 Score=179.00 Aligned_cols=179 Identities=17% Similarity=0.177 Sum_probs=110.2
Q ss_pred hhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeec----------CcccccCeeeeecCCccccchhHHHHHH
Q psy2395 319 VTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYII----------GKKEFYGLVLNITSDVLIPRPETELLVD 388 (570)
Q Consensus 319 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~----------g~~~f~~~~~~v~~~~~~pr~~t~~l~~ 388 (570)
+++.++..++++.. ++++.+.+..++.++..+.|++|++ ++.+||+..+. ++.++.|++.++.+.+
T Consensus 73 ~l~~~~~~l~l~~~---~~~~~~~~~~ll~~~~~~~pl~~i~~~r~~~~~~~~~~~~y~~~~~-~~~~L~d~~~t~~~~~ 148 (480)
T 3b3j_A 73 IITLGCNSVLIQFA---TPHDFCSFYNILKTCRGHTLERSVFSERTEESSAVQYFQFYGYLSQ-QQNMMQDYVRTGTYQR 148 (480)
T ss_dssp --------------------------------------------------CCEEEEGGGCSCH-HHHHHHHHHHHHHHHH
T ss_pred hhcCChHHhhccCC---CHHHHHHHHHHHHHHHcCCcHHHHHhhhhhhhchhhHHHHHhhhcc-chhhhcChHhHHHHHH
Confidence 35555666655542 4567778889999999999999999 77888888776 7888999999999988
Q ss_pred HHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC
Q psy2395 389 LIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY 467 (570)
Q Consensus 389 ~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~ 467 (570)
.++..+. .++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+ +++.|++++..++ ...+++++.+|+.+. +.
T Consensus 149 ~il~~l~~~~~~~VLDiGcGtG~la~~la~~~--~~~V~gvD~s~-~l~~A~~~~~~~g--l~~~v~~~~~d~~~~-~~- 221 (480)
T 3b3j_A 149 AILQNHTDFKDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEV-SL- 221 (480)
T ss_dssp HHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT--CSEEEEEECHH-HHHHHHHHHHHTT--CTTTEEEEESCTTTC-CC-
T ss_pred HHHHhhhhcCCCEEEEecCcccHHHHHHHHcC--CCEEEEEEcHH-HHHHHHHHHHHcC--CCCcEEEEECchhhC-cc-
Confidence 8877543 356799999999999999998753 46999999999 9999999998753 335799999999763 21
Q ss_pred CCceeEEEECCC-CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 468 KKLFNIIVANPP-YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 468 ~~~fD~Iv~NPP-y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.++||+|++|+| |+... +.+...+..+.++|+|||++++.+
T Consensus 222 ~~~fD~Ivs~~~~~~~~~------------------------e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 222 PEQVDIIISEPMGYMLFN------------------------ERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp SSCEEEEECCCCHHHHTC------------------------HHHHHHHHHGGGGEEEEEEEESCE
T ss_pred CCCeEEEEEeCchHhcCc------------------------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 368999999988 32110 123456668889999999998643
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=163.05 Aligned_cols=141 Identities=19% Similarity=0.311 Sum_probs=114.5
Q ss_pred CeeeeecCCccc---cchhHHHHHHHHHhhcC---CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 367 GLVLNITSDVLI---PRPETELLVDLIVKKTF---EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 367 ~~~~~v~~~~~~---pr~~t~~l~~~~~~~~~---~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.|...+++|. +.+.++.+++.+..... .++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++
T Consensus 197 ~~~~~~~pgvFs~~~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g---~~V~gvDis~~al~~A~~ 273 (381)
T 3dmg_A 197 EYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMG---AEVVGVEDDLASVLSLQK 273 (381)
T ss_dssp EEEEEECTTCTTTTSCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTT---CEEEEEESBHHHHHHHHH
T ss_pred eEEEEeCCCceeCCCCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcC---CEEEEEECCHHHHHHHHH
Confidence 357888999998 55888999888876532 356799999999999999999763 699999999999999999
Q ss_pred HHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh
Q psy2395 441 NAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 441 n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
|+..+ +.+++++++|+.+.... .++||+|++||||+... ....+....++..+.+
T Consensus 274 n~~~~----~~~v~~~~~D~~~~~~~-~~~fD~Ii~npp~~~~~--------------------~~~~~~~~~~l~~~~~ 328 (381)
T 3dmg_A 274 GLEAN----ALKAQALHSDVDEALTE-EARFDIIVTNPPFHVGG--------------------AVILDVAQAFVNVAAA 328 (381)
T ss_dssp HHHHT----TCCCEEEECSTTTTSCT-TCCEEEEEECCCCCTTC--------------------SSCCHHHHHHHHHHHH
T ss_pred HHHHc----CCCeEEEEcchhhcccc-CCCeEEEEECCchhhcc--------------------cccHHHHHHHHHHHHH
Confidence 99874 44589999999775432 47899999999997422 1123466889999999
Q ss_pred ccccCeEEEEEEcCC
Q psy2395 521 YLVKNGLLLIEHGYN 535 (570)
Q Consensus 521 ~LkpgG~l~~~~~~~ 535 (570)
+|+|||++++++...
T Consensus 329 ~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 329 RLRPGGVFFLVSNPF 343 (381)
T ss_dssp HEEEEEEEEEEECTT
T ss_pred hcCcCcEEEEEEcCC
Confidence 999999999987653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=150.51 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=102.1
Q ss_pred eeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHH
Q psy2395 357 AYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434 (570)
Q Consensus 357 ~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~a 434 (570)
..+.| .|.+..+.+.++ ..++|.+..+.+.+...+. .++.+|||+|||+|.+++.++..+ ..+|+|+|+|+.+
T Consensus 14 ~ii~G--~~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~ 88 (201)
T 2ift_A 14 RIIAG--LWRGRKLPVLNS-EGLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTV 88 (201)
T ss_dssp ECCSS--TTTTCEEECC----------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHH
T ss_pred EEEEe--eeCCcEecCCCC-CCcCcCHHHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHH
Confidence 34444 577888877654 3355555555555444322 156799999999999999877664 3689999999999
Q ss_pred HHHHHHHHHhhcccCC-CCEEEEEccccccccc-CCCc-eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHH
Q psy2395 435 LKIAKKNAKKKLTKYN-IPIKFIKSNWYNNLQN-YKKL-FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI 511 (570)
Q Consensus 435 l~~A~~n~~~~~~~~~-~~v~~~~~D~~~~l~~-~~~~-fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~ 511 (570)
++.|++|+..++ .. .+++++++|+.+..+. ..++ ||+|++||||... .+
T Consensus 89 l~~a~~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~~~--------------------------~~ 140 (201)
T 2ift_A 89 ANQLKKNLQTLK--CSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFN--------------------------LA 140 (201)
T ss_dssp HHHHHHHHHHTT--CCTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSC--------------------------HH
T ss_pred HHHHHHHHHHhC--CCccceEEEECCHHHHHHhhccCCCCCEEEECCCCCCc--------------------------cH
Confidence 999999998742 11 4699999999765432 2468 9999999997521 23
Q ss_pred HHHHHHH--hhccccCeEEEEEEcCCC
Q psy2395 512 KEIVKNA--SKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 512 ~~~l~~~--~~~LkpgG~l~~~~~~~~ 536 (570)
..+++.+ .++|+|||.+++.+....
T Consensus 141 ~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 141 EQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred HHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 5566666 678999999999876544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=151.53 Aligned_cols=155 Identities=14% Similarity=0.214 Sum_probs=110.6
Q ss_pred HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 386 l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
++..+.....+++.+|||+|||+|.+++.+++... ++++|+|+|+|+.|++.|++++...+ ...+++|+++|+.+ +
T Consensus 59 ~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~~D~~~-~ 135 (261)
T 4gek_A 59 MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIEGDIRD-I 135 (261)
T ss_dssp HHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCTTT-C
T ss_pred HHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEeeccccc-c
Confidence 33444444456788999999999999999998753 36799999999999999999988632 34579999999965 3
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc--CC-------
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG--YN------- 535 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~--~~------- 535 (570)
+. ++||+|+++-..... | ......+++++++.|+|||.+++.-. ..
T Consensus 136 ~~--~~~d~v~~~~~l~~~-------------~----------~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~ 190 (261)
T 4gek_A 136 AI--ENASMVVLNFTLQFL-------------E----------PSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL 190 (261)
T ss_dssp CC--CSEEEEEEESCGGGS-------------C----------HHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHH
T ss_pred cc--cccccceeeeeeeec-------------C----------chhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHH
Confidence 43 579999996422100 0 12335789999999999999987421 11
Q ss_pred ---------------------------------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 536 ---------------------------------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 536 ---------------------------------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+...++|+++||+.++++-...+. -.++|.+
T Consensus 191 ~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF-~~~iA~K 256 (261)
T 4gek_A 191 LFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNF-GSLVALK 256 (261)
T ss_dssp HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTE-EEEEEEC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccE-EEEEEEE
Confidence 12345678899999999887543332 2345554
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.3e-16 Score=162.58 Aligned_cols=144 Identities=16% Similarity=0.261 Sum_probs=108.6
Q ss_pred cCeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
.++.+...|++|.+. ..++.+++.+. ..++.+|||+|||+|.+++.+++.++ +.+|+|+|+|+.+++.|++|+
T Consensus 191 ~~~~~~~~pg~Fs~~~~d~~~~~ll~~l~---~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~ 266 (375)
T 4dcm_A 191 TDWTIHNHANVFSRTGLDIGARFFMQHLP---ENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNV 266 (375)
T ss_dssp TTEEEEECTTCTTCSSCCHHHHHHHHTCC---CSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHH
T ss_pred CceEEEeCCCcccCCcccHHHHHHHHhCc---ccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHH
Confidence 357788899999885 34445544331 23457999999999999999999875 689999999999999999999
Q ss_pred HhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
..++.....+++|+.+|+.+.++ .++||+|++||||+..... +......+++.+.++|
T Consensus 267 ~~ngl~~~~~v~~~~~D~~~~~~--~~~fD~Ii~nppfh~~~~~--------------------~~~~~~~~l~~~~~~L 324 (375)
T 4dcm_A 267 ETNMPEALDRCEFMINNALSGVE--PFRFNAVLCNPPFHQQHAL--------------------TDNVAWEMFHHARRCL 324 (375)
T ss_dssp HHHCGGGGGGEEEEECSTTTTCC--TTCEEEEEECCCC---------------------------CCHHHHHHHHHHHHE
T ss_pred HHcCCCcCceEEEEechhhccCC--CCCeeEEEECCCcccCccc--------------------CHHHHHHHHHHHHHhC
Confidence 98753333468999999987554 3789999999999743211 0113357899999999
Q ss_pred ccCeEEEEEEcCC
Q psy2395 523 VKNGLLLIEHGYN 535 (570)
Q Consensus 523 kpgG~l~~~~~~~ 535 (570)
+|||++++.....
T Consensus 325 kpgG~l~iv~n~~ 337 (375)
T 4dcm_A 325 KINGELYIVANRH 337 (375)
T ss_dssp EEEEEEEEEEETT
T ss_pred CCCcEEEEEEECC
Confidence 9999999976543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=146.57 Aligned_cols=139 Identities=18% Similarity=0.277 Sum_probs=102.8
Q ss_pred ccccCeeeeecCCccccchhHHHHHHHHHhhcC---CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 363 KEFYGLVLNITSDVLIPRPETELLVDLIVKKTF---EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 363 ~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~---~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
..|++..+..+++ ++|.+..+.+.+...+. +++.+|||+|||+|.++..+++.++ +|+|+|+|+.+++.|+
T Consensus 7 g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~ 80 (171)
T 1ws6_A 7 GKARGVALKVPAS---ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLK 80 (171)
T ss_dssp GGGTTCEECCCTT---CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHH
T ss_pred cccCCeEecCCCC---CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHH
Confidence 3678999999998 55555555555544432 2677999999999999999998753 4999999999999999
Q ss_pred HHHHhhcccCCCCEEEEEcccccccccC---CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
+|+..++ .+++++++|+.+.++.. .++||+|++||||. .. . ...+..+.+
T Consensus 81 ~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~-~---------------------~~~~~~~~~ 133 (171)
T 1ws6_A 81 ENVRRTG----LGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MD-L---------------------AALFGELLA 133 (171)
T ss_dssp HHHHHHT----CCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SC-T---------------------THHHHHHHH
T ss_pred HHHHHcC----CceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hh-H---------------------HHHHHHHHh
Confidence 9998752 27999999997643321 24799999999987 21 0 012233332
Q ss_pred HHhhccccCeEEEEEEcCCC
Q psy2395 517 NASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~~~ 536 (570)
.++|+|||++++.++...
T Consensus 134 --~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 134 --SGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp --HTCEEEEEEEEEEEETTS
T ss_pred --hcccCCCcEEEEEeCCcc
Confidence 589999999999876543
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.2e-16 Score=149.68 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=103.2
Q ss_pred eeecCcccccCeeeeecCCccccchhHHHHHHHHHhhcCC--CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHH
Q psy2395 357 AYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFE--KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFA 434 (570)
Q Consensus 357 ~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~--~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~a 434 (570)
..+.| .|.+..+.+.++ ..++|.+..+.+.+...+.. ++.+|||+|||+|.+++.++..+ ..+|+|+|+|+.+
T Consensus 15 ~ii~g--~~~g~~l~~~~~-~~~rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~ 89 (202)
T 2fpo_A 15 RIIGG--QWRGRKLPVPDS-PGLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAV 89 (202)
T ss_dssp ECCSG--GGTTCEEECCCC-------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHH
T ss_pred EEEEE--EEcCcEecCCCC-CCCCCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHH
Confidence 44555 577888887664 44666666666665544321 56799999999999999877665 3589999999999
Q ss_pred HHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHH
Q psy2395 435 LKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEI 514 (570)
Q Consensus 435 l~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~ 514 (570)
++.|++|+..++. .+++++++|+.+.++...++||+|++||||... .+..+
T Consensus 90 l~~a~~~~~~~~~---~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~~~--------------------------~~~~~ 140 (202)
T 2fpo_A 90 SQQLIKNLATLKA---GNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRG--------------------------LLEET 140 (202)
T ss_dssp HHHHHHHHHHTTC---CSEEEECSCHHHHHSSCCCCEEEEEECCSSSTT--------------------------THHHH
T ss_pred HHHHHHHHHHcCC---CcEEEEECCHHHHHhhcCCCCCEEEECCCCCCC--------------------------cHHHH
Confidence 9999999987421 379999999977555444689999999998621 12445
Q ss_pred HHHHh--hccccCeEEEEEEcC
Q psy2395 515 VKNAS--KYLVKNGLLLIEHGY 534 (570)
Q Consensus 515 l~~~~--~~LkpgG~l~~~~~~ 534 (570)
++.+. ++|+|||++++.+..
T Consensus 141 l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 141 INLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEG
T ss_pred HHHHHhcCccCCCcEEEEEECC
Confidence 55554 469999999987754
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=150.09 Aligned_cols=153 Identities=24% Similarity=0.322 Sum_probs=118.4
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
...+.++|+.+... +.+..+++.+... ..++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|++|+.
T Consensus 88 ~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~-~~~~~~VLDiGcG~G~l~~~la~~g---~~v~gvDi~~~~v~~a~~n~~ 163 (254)
T 2nxc_A 88 EIPLVIEPGMAFGTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAK 163 (254)
T ss_dssp SEEEECCCC-----CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHH
T ss_pred ceEEEECCCccccCCCCHHHHHHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHH
Confidence 45566677665433 5666666666554 4567899999999999999998765 399999999999999999998
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.+ +..+++.++|+.+.++ .++||+|++|+++ ..+..++..+.++|+
T Consensus 164 ~~----~~~v~~~~~d~~~~~~--~~~fD~Vv~n~~~----------------------------~~~~~~l~~~~~~Lk 209 (254)
T 2nxc_A 164 RN----GVRPRFLEGSLEAALP--FGPFDLLVANLYA----------------------------ELHAALAPRYREALV 209 (254)
T ss_dssp HT----TCCCEEEESCHHHHGG--GCCEEEEEEECCH----------------------------HHHHHHHHHHHHHEE
T ss_pred Hc----CCcEEEEECChhhcCc--CCCCCEEEECCcH----------------------------HHHHHHHHHHHHHcC
Confidence 75 3238999999977543 3689999998753 134688899999999
Q ss_pred cCeEEEEE-EcCCCHHHHHHHHHHCCCeeEEEEec
Q psy2395 524 KNGLLLIE-HGYNQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 524 pgG~l~~~-~~~~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
|||++++. +...+.+.+.+.+.++||..+.+..+
T Consensus 210 pgG~lils~~~~~~~~~v~~~l~~~Gf~~~~~~~~ 244 (254)
T 2nxc_A 210 PGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244 (254)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCEEEEEeeccCCHHHHHHHHHHCCCEEEEEecc
Confidence 99999884 45677889999999999998876653
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.8e-16 Score=146.03 Aligned_cols=133 Identities=17% Similarity=0.215 Sum_probs=94.3
Q ss_pred CCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI 451 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~ 451 (570)
|....++|.++.+.+.+...+. .++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++|+..++ ...
T Consensus 6 p~~~~~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~~~ 81 (177)
T 2esr_A 6 LDGKITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTK--AEN 81 (177)
T ss_dssp ------------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTT--CGG
T ss_pred CCCCCCCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcC--CCC
Confidence 3445678888878777776653 367799999999999999999773 4699999999999999999998642 223
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh--hccccCeEEE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS--KYLVKNGLLL 529 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~--~~LkpgG~l~ 529 (570)
+++++++|+.+.++...++||+|++||||.. .....+++.+. ++|+|||+++
T Consensus 82 ~~~~~~~d~~~~~~~~~~~fD~i~~~~~~~~--------------------------~~~~~~~~~l~~~~~L~~gG~l~ 135 (177)
T 2esr_A 82 RFTLLKMEAERAIDCLTGRFDLVFLDPPYAK--------------------------ETIVATIEALAAKNLLSEQVMVV 135 (177)
T ss_dssp GEEEECSCHHHHHHHBCSCEEEEEECCSSHH--------------------------HHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ceEEEECcHHHhHHhhcCCCCEEEECCCCCc--------------------------chHHHHHHHHHhCCCcCCCcEEE
Confidence 6999999997755444467999999999841 12344555554 8999999999
Q ss_pred EEEcCCC
Q psy2395 530 IEHGYNQ 536 (570)
Q Consensus 530 ~~~~~~~ 536 (570)
+.++...
T Consensus 136 ~~~~~~~ 142 (177)
T 2esr_A 136 CETDKTV 142 (177)
T ss_dssp EEEETTC
T ss_pred EEECCcc
Confidence 9876543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=146.12 Aligned_cols=128 Identities=17% Similarity=0.180 Sum_probs=106.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||+|||||++++.+++.++ ..+|+|+|+|+.+++.|++|+..++ ...+++++++|+++.++. ..+||+|
T Consensus 13 v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~g--l~~~i~~~~~d~l~~l~~-~~~~D~I 88 (225)
T 3kr9_A 13 VSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHG--LKEKIQVRLANGLAAFEE-TDQVSVI 88 (225)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-GGCCCEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEECchhhhccc-CcCCCEE
Confidence 35678999999999999999999875 5799999999999999999999864 334699999999887754 1269988
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
+.. | .|-..+..++..+...|+++|++++. +....+.++++|.++||..+..
T Consensus 89 via--------------------------G-~Gg~~i~~Il~~~~~~L~~~~~lVlq-~~~~~~~vr~~L~~~Gf~i~~e 140 (225)
T 3kr9_A 89 TIA--------------------------G-MGGRLIARILEEGLGKLANVERLILQ-PNNREDDLRIWLQDHGFQIVAE 140 (225)
T ss_dssp EEE--------------------------E-ECHHHHHHHHHHTGGGCTTCCEEEEE-ESSCHHHHHHHHHHTTEEEEEE
T ss_pred EEc--------------------------C-CChHHHHHHHHHHHHHhCCCCEEEEE-CCCCHHHHHHHHHHCCCEEEEE
Confidence 861 1 13356889999999999999998874 4478999999999999998754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-15 Score=144.31 Aligned_cols=153 Identities=22% Similarity=0.281 Sum_probs=116.8
Q ss_pred eeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 368 LVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 368 ~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..+.++++..... +.+..+.+.+... ..++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++|+..
T Consensus 29 ~~~~~~~~~~f~~~~~~~~~~~~~~l~~~-~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~ 105 (205)
T 3grz_A 29 EIIRLDPGLAFGTGNHQTTQLAMLGIERA-MVKPLTVADVGTGSGILAIAAHKLG--AKSVLATDISDESMTAAEENAAL 105 (205)
T ss_dssp EEEEESCC-----CCHHHHHHHHHHHHHH-CSSCCEEEEETCTTSHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHH
T ss_pred eeEEecCCcccCCCCCccHHHHHHHHHHh-ccCCCEEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHH
Confidence 3445555553222 4555666666543 3567899999999999999998753 46999999999999999999987
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
++. .+++++++|+.+.. .++||+|++|+|+. .+..+++.+.++|+|
T Consensus 106 ~~~---~~v~~~~~d~~~~~---~~~fD~i~~~~~~~----------------------------~~~~~l~~~~~~L~~ 151 (205)
T 3grz_A 106 NGI---YDIALQKTSLLADV---DGKFDLIVANILAE----------------------------ILLDLIPQLDSHLNE 151 (205)
T ss_dssp TTC---CCCEEEESSTTTTC---CSCEEEEEEESCHH----------------------------HHHHHGGGSGGGEEE
T ss_pred cCC---CceEEEeccccccC---CCCceEEEECCcHH----------------------------HHHHHHHHHHHhcCC
Confidence 421 13999999997643 37899999998642 357889999999999
Q ss_pred CeEEEEE-EcCCCHHHHHHHHHHCCCeeEEEEec
Q psy2395 525 NGLLLIE-HGYNQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 525 gG~l~~~-~~~~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
||++++. ....+...+.+++.+.||..+.+..+
T Consensus 152 gG~l~~~~~~~~~~~~~~~~~~~~Gf~~~~~~~~ 185 (205)
T 3grz_A 152 DGQVIFSGIDYLQLPKIEQALAENSFQIDLKMRA 185 (205)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCEEEEEecCcccHHHHHHHHHHcCCceEEeecc
Confidence 9999885 56677888999999999998876653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.7e-15 Score=141.01 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=104.5
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
...++.+|||+|||+|.++..+++...+..+|+|+|+|+.+++.|++|+..++ ...+++++++|+.+.....+++||+
T Consensus 19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~ 96 (197)
T 3eey_A 19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--LIDRVTLIKDGHQNMDKYIDCPVKA 96 (197)
T ss_dssp HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--CGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECCHHHHhhhccCCceE
Confidence 34567899999999999999999885335699999999999999999998742 2246999999986654344578999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------CHHHHHHHHHH-
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------QSNLVRKLLFK- 546 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~l~~ll~~- 546 (570)
|++||||++..+.... ........+++.+.++|+|||++++..... ....+.+++..
T Consensus 97 v~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~l 160 (197)
T 3eey_A 97 VMFNLGYLPSGDHSIS----------------TRPETTIQALSKAMELLVTGGIITVVIYYGGDTGFEEKEKVLEFLKGV 160 (197)
T ss_dssp EEEEESBCTTSCTTCB----------------CCHHHHHHHHHHHHHHEEEEEEEEEEECCBTTTBSHHHHHHHHHHTTS
T ss_pred EEEcCCcccCcccccc----------------cCcccHHHHHHHHHHhCcCCCEEEEEEccCCCCcHHHHHHHHHHHHhC
Confidence 9999999764321100 112345679999999999999998865321 23445556554
Q ss_pred --CCCeeEEE
Q psy2395 547 --YGFSDIKS 554 (570)
Q Consensus 547 --~Gf~~i~~ 554 (570)
.+|.....
T Consensus 161 ~~~~~~v~~~ 170 (197)
T 3eey_A 161 DQKKFIVQRT 170 (197)
T ss_dssp CTTTEEEEEE
T ss_pred CCCcEEEEEE
Confidence 45766543
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=155.71 Aligned_cols=166 Identities=19% Similarity=0.221 Sum_probs=113.9
Q ss_pred cCeeeeecCCccccc---hhHHHHHHHHHhhc--CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPR---PETELLVDLIVKKT--FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr---~~t~~l~~~~~~~~--~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+..|.+++..+... ++.+...+++.... ..++.+|||+|||+|.+++.+++.+ ++|+|+|+|+.+++.|++
T Consensus 117 ~g~~f~v~~~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~g---a~V~~VD~s~~al~~a~~ 193 (332)
T 2igt_A 117 LGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWAKE 193 (332)
T ss_dssp TTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHHHH
T ss_pred CCEEEEEecCccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHH
Confidence 456666665444332 34444333333322 2356799999999999999999754 499999999999999999
Q ss_pred HHHhhcccCCC-CEEEEEcccccccccC---CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 441 NAKKKLTKYNI-PIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 441 n~~~~~~~~~~-~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
|+..++ ... ++.++++|+++.+... .++||+|++||||+..... .. + ......+..++.
T Consensus 194 n~~~~g--l~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~----~~--------~---~~~~~~~~~ll~ 256 (332)
T 2igt_A 194 NQVLAG--LEQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTH----GE--------V---WQLFDHLPLMLD 256 (332)
T ss_dssp HHHHHT--CTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTT----CC--------E---EEHHHHHHHHHH
T ss_pred HHHHcC--CCccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCch----HH--------H---HHHHHHHHHHHH
Confidence 999763 222 4999999998755321 3689999999997632210 00 0 012356788999
Q ss_pred HHhhccccCeEEEEEEcCCC---HHHHHHHHH----HCCCee
Q psy2395 517 NASKYLVKNGLLLIEHGYNQ---SNLVRKLLF----KYGFSD 551 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~~~---~~~l~~ll~----~~Gf~~ 551 (570)
.+.++|+|||++++.+.... ...+.+++. +.|+..
T Consensus 257 ~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v 298 (332)
T 2igt_A 257 ICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVV 298 (332)
T ss_dssp HHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEE
T ss_pred HHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 99999999999888765432 344555554 578765
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=155.08 Aligned_cols=150 Identities=14% Similarity=0.125 Sum_probs=118.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||+|.++..++....++.+|+|+|+|+.+++.|++|+..++ ...+++++++|+.+. +.. ++||+|
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~-~~~-~~fD~v 191 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA--LAGQITLHRQDAWKL-DTR-EGYDLL 191 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEECCGGGC-CCC-SCEEEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECchhcC-Ccc-CCeEEE
Confidence 4567899999999999999986322236899999999999999999998642 233599999999763 332 799999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------------------
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-------------------- 534 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------- 534 (570)
+++.+++..++ ......+++.+.+.|+|||++++....
T Consensus 192 ~~~~~~~~~~~----------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~ 249 (305)
T 3ocj_A 192 TSNGLNIYEPD----------------------DARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHD 249 (305)
T ss_dssp ECCSSGGGCCC----------------------HHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHH
T ss_pred EECChhhhcCC----------------------HHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccch
Confidence 99887653211 123456899999999999999975411
Q ss_pred -------------------CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 535 -------------------NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 535 -------------------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
...+.+.++++++||..+.+..+..+...+++++++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 250 LQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred hhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 246788999999999999999888888899998864
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=150.65 Aligned_cols=148 Identities=14% Similarity=0.207 Sum_probs=112.5
Q ss_pred cCeeeeecC--Cccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 366 YGLVLNITS--DVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 366 ~~~~~~v~~--~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.|..|.++. ..|.|+ .....+... ..++.+|||+|||+|.+++.+++.+. .+|+|+|+|+.+++.|++|
T Consensus 95 ~g~~f~~d~~~~~f~~~~~~~~~~l~~~-----~~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n 167 (278)
T 2frn_A 95 NGIKYKLDVAKIMFSPANVKERVRMAKV-----AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVEN 167 (278)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHHHHH-----CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHH
T ss_pred CCEEEEEEccceeEcCCcHHHHHHHHHh-----CCCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHH
Confidence 466777753 556666 333333222 34678999999999999999998874 3899999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
+..|+ ...+++++++|+.+... .++||+|++|||+.. ..++..+.++
T Consensus 168 ~~~n~--~~~~v~~~~~D~~~~~~--~~~fD~Vi~~~p~~~-----------------------------~~~l~~~~~~ 214 (278)
T 2frn_A 168 IHLNK--VEDRMSAYNMDNRDFPG--ENIADRILMGYVVRT-----------------------------HEFIPKALSI 214 (278)
T ss_dssp HHHTT--CTTTEEEECSCTTTCCC--CSCEEEEEECCCSSG-----------------------------GGGHHHHHHH
T ss_pred HHHcC--CCceEEEEECCHHHhcc--cCCccEEEECCchhH-----------------------------HHHHHHHHHH
Confidence 99864 23359999999977554 478999999999642 3456677889
Q ss_pred cccCeEEEEEEc-------CCCHHHHHHHHHHCCCeeEE
Q psy2395 522 LVKNGLLLIEHG-------YNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 522 LkpgG~l~~~~~-------~~~~~~l~~ll~~~Gf~~i~ 553 (570)
|+|||++++... ....+.+.+.+.+.||....
T Consensus 215 LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 215 AKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp EEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEE
Confidence 999999987432 24567788999999998644
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.2e-15 Score=156.22 Aligned_cols=165 Identities=11% Similarity=0.172 Sum_probs=117.0
Q ss_pred cCeeeeecCC-----ccccc-hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 366 YGLVLNITSD-----VLIPR-PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 366 ~~~~~~v~~~-----~~~pr-~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.|.+|.+++. .|.+. ..++.++... . .++.+|||+|||||.+++.+|..+ ..+|+|+|+|+.|++.|+
T Consensus 179 ~g~~f~v~~~~~~~t~ff~~~~~~~~~~~~~---~-~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~ 252 (385)
T 2b78_A 179 NGISYNVFLNDGLMTGIFLDQRQVRNELING---S-AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSL 252 (385)
T ss_dssp TTEEEEECSSSSSCCSSCGGGHHHHHHHHHT---T-TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHH
T ss_pred CCEEEEEeccccccCCcCCcHHHHHHHHHHH---h-cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHH
Confidence 5888999886 55443 3344443322 1 356799999999999999999754 358999999999999999
Q ss_pred HHHHhhcccCCC-CEEEEEcccccccccC---CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHH
Q psy2395 440 KNAKKKLTKYNI-PIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIV 515 (570)
Q Consensus 440 ~n~~~~~~~~~~-~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l 515 (570)
+|+..|+ ... +++|+++|+++.++.. ..+||+|++||||+..... ...+....+..++
T Consensus 253 ~N~~~n~--~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~----------------~~~~~~~~~~~ll 314 (385)
T 2b78_A 253 AHFEANH--LDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKK----------------EVFSVSKDYHKLI 314 (385)
T ss_dssp HHHHHTT--CCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC---------------------CCCCHHHHHHHHH
T ss_pred HHHHHcC--CCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChh----------------hHHHHHHHHHHHH
Confidence 9999864 222 6999999997755421 3589999999999632110 0113346778899
Q ss_pred HHHhhccccCeEEEEEEcCCC--HHH----HHHHHHHCCCeeEEE
Q psy2395 516 KNASKYLVKNGLLLIEHGYNQ--SNL----VRKLLFKYGFSDIKS 554 (570)
Q Consensus 516 ~~~~~~LkpgG~l~~~~~~~~--~~~----l~~ll~~~Gf~~i~~ 554 (570)
..+.+.|+|||++++.+.... .+. +...+.+.|...+..
T Consensus 315 ~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~ 359 (385)
T 2b78_A 315 RQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGKQKHTYLDL 359 (385)
T ss_dssp HHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 999999999999999876543 233 334455677774443
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-15 Score=156.89 Aligned_cols=155 Identities=18% Similarity=0.238 Sum_probs=115.2
Q ss_pred cccchhHHHHHH---HHHhhc-----------CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 377 LIPRPETELLVD---LIVKKT-----------FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 377 ~~pr~~t~~l~~---~~~~~~-----------~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
.+|++.++.+.. .++... ..++.+|||+|||+|.++..+++...++.+|+|+|+|+.+++.|++|+
T Consensus 49 ~~p~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~ 128 (383)
T 4fsd_A 49 AVPESHRKILADIADEVLEKFYGCGSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYV 128 (383)
T ss_dssp -CCHHHHHHHHTSCHHHHHHCCSCCCCCSCGGGGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTH
T ss_pred CCCHHHHHHHHHhhHHHHHHhcCCCCccccccCCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 678887777755 333322 236789999999999999999987644679999999999999999998
Q ss_pred Hhhcc-----cCCCCEEEEEccccccc-----ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHH
Q psy2395 443 KKKLT-----KYNIPIKFIKSNWYNNL-----QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIK 512 (570)
Q Consensus 443 ~~~~~-----~~~~~v~~~~~D~~~~l-----~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~ 512 (570)
..+.. ....+++|+++|+.+.. +..+++||+|++|..+...+ ...
T Consensus 129 ~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~-------------------------d~~ 183 (383)
T 4fsd_A 129 EYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLST-------------------------NKL 183 (383)
T ss_dssp HHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCS-------------------------CHH
T ss_pred HHhhhhcccccCCCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCC-------------------------CHH
Confidence 75411 01247999999997631 33357999999986544221 236
Q ss_pred HHHHHHhhccccCeEEEEEEcC-----------------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 513 EIVKNASKYLVKNGLLLIEHGY-----------------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 513 ~~l~~~~~~LkpgG~l~~~~~~-----------------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.+++++.++|+|||++++.... ...+.+.++|.++||..+++..
T Consensus 184 ~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 184 ALFKEIHRVLRDGGELYFSDVYADRRLSEAAQQDPILYGECLGGALYLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEEESSCCCHHHHHCHHHHHTTCTTCCBHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHcCCCCEEEEEEeccccccCHhHhhhHHHhhcccccCCCHHHHHHHHHHCCCceEEEEe
Confidence 8899999999999999885311 2237889999999999876654
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.7e-15 Score=143.46 Aligned_cols=142 Identities=18% Similarity=0.117 Sum_probs=111.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||+|||+|++++.+++.++ ..+|+|+|+|+.+++.|++|+..++ ...+++++++|+++.+.. .++||+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~g--l~~~I~~~~gD~l~~~~~-~~~~D~I 94 (230)
T 3lec_A 19 VPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHG--LTSKIDVRLANGLSAFEE-ADNIDTI 94 (230)
T ss_dssp SCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-GGCCCEE
T ss_pred CCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECchhhcccc-ccccCEE
Confidence 35678999999999999999999875 5789999999999999999999864 344799999999887653 2379998
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
+. +| -|-+.+..++......|+++|+|++. |....+.++++|.++||..+..
T Consensus 95 vi--------------------------aG-mGg~lI~~IL~~~~~~l~~~~~lIlq-p~~~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 95 TI--------------------------CG-MGGRLIADILNNDIDKLQHVKTLVLQ-PNNREDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp EE--------------------------EE-ECHHHHHHHHHHTGGGGTTCCEEEEE-ESSCHHHHHHHHHHTTEEEEEE
T ss_pred EE--------------------------eC-CchHHHHHHHHHHHHHhCcCCEEEEE-CCCChHHHHHHHHHCCCEEEEE
Confidence 75 01 12367889999999999999988764 4567899999999999998653
Q ss_pred E--ecCCCCceEEEEE
Q psy2395 555 W--RDLSGIERVTQGK 568 (570)
Q Consensus 555 ~--~D~~g~~R~~~~~ 568 (570)
. .+-.....++.++
T Consensus 147 ~lv~e~~~~Yeii~~~ 162 (230)
T 3lec_A 147 DILTENDKRYEILVVK 162 (230)
T ss_dssp EEEEC--CEEEEEEEE
T ss_pred EEEEECCEEEEEEEEE
Confidence 3 4444444555543
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=144.89 Aligned_cols=161 Identities=17% Similarity=0.130 Sum_probs=115.0
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
+.+++|.|++ ...++... ...++.+|||+|||+|.+++.+|+..+ +.+|+|+|+|+.+++.|++|+..++ -.++
T Consensus 17 ~~~~~~~~~~-~~~~~~~~-f~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~---~~nv 90 (213)
T 2fca_A 17 ADIAISNPAD-YKGKWNTV-FGNDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSE---AQNV 90 (213)
T ss_dssp TTTBCSCGGG-GTTCHHHH-HTSCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSC---CSSE
T ss_pred ccEEecCccc-cCCCHHHH-cCCCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcC---CCCE
Confidence 4555565543 22222211 234567999999999999999999875 6899999999999999999998742 2369
Q ss_pred EEEEcccccccc-cCCCceeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 454 KFIKSNWYNNLQ-NYKKLFNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 454 ~~~~~D~~~~l~-~~~~~fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.++++|+.+... ..+++||.|++|.| |... .++++. -.+..+++.+.++|+|||.+++
T Consensus 91 ~~~~~d~~~l~~~~~~~~~d~v~~~~~~p~~~~----------~~~~~r---------l~~~~~l~~~~~~LkpgG~l~~ 151 (213)
T 2fca_A 91 KLLNIDADTLTDVFEPGEVKRVYLNFSDPWPKK----------RHEKRR---------LTYSHFLKKYEEVMGKGGSIHF 151 (213)
T ss_dssp EEECCCGGGHHHHCCTTSCCEEEEESCCCCCSG----------GGGGGS---------TTSHHHHHHHHHHHTTSCEEEE
T ss_pred EEEeCCHHHHHhhcCcCCcCEEEEECCCCCcCc----------cccccc---------cCcHHHHHHHHHHcCCCCEEEE
Confidence 999999976321 22468999999854 2211 011110 0236889999999999999999
Q ss_pred EEcC-CCHHHHHHHHHHCCCeeEEEEecCC
Q psy2395 531 EHGY-NQSNLVRKLLFKYGFSDIKSWRDLS 559 (570)
Q Consensus 531 ~~~~-~~~~~l~~ll~~~Gf~~i~~~~D~~ 559 (570)
.+.. .....+.+.+.+.||..+....|+.
T Consensus 152 ~td~~~~~~~~~~~~~~~g~~~~~~~~d~~ 181 (213)
T 2fca_A 152 KTDNRGLFEYSLKSFSEYGLLLTYVSLDLH 181 (213)
T ss_dssp EESCHHHHHHHHHHHHHHTCEEEEEESSGG
T ss_pred EeCCHHHHHHHHHHHHHCCCcccccccccc
Confidence 8754 3456677888888999888877754
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.63 E-value=5.7e-15 Score=141.92 Aligned_cols=147 Identities=20% Similarity=0.254 Sum_probs=112.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..+.+.++.....++.+|||+|||+|.++..+++. + +.+|+|+|+|+.+++.|++++..++ ...+++++++|+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~- 104 (219)
T 3dlc_A 30 PIIAENIINRFGITAGTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADAN--LNDRIQIVQGDVHN- 104 (219)
T ss_dssp HHHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECBTTB-
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhcc--ccCceEEEEcCHHH-
Confidence 34445555444433449999999999999999987 3 5799999999999999999998742 23469999999965
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC--------
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-------- 535 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-------- 535 (570)
++..+++||+|+++..+.... ....+++.+.+.|+|||.+++.....
T Consensus 105 ~~~~~~~~D~v~~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 159 (219)
T 3dlc_A 105 IPIEDNYADLIVSRGSVFFWE-------------------------DVATAFREIYRILKSGGKTYIGGGFGNKELRDSI 159 (219)
T ss_dssp CSSCTTCEEEEEEESCGGGCS-------------------------CHHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHH
T ss_pred CCCCcccccEEEECchHhhcc-------------------------CHHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHH
Confidence 333457899999986543211 23678999999999999999864322
Q ss_pred ----------------------CHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 536 ----------------------QSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 536 ----------------------~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
..+.+.++|+++||+.+++..+..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~~~~~ 206 (219)
T 3dlc_A 160 SAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEG 206 (219)
T ss_dssp HHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEEEETTE
T ss_pred HHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEEecCCc
Confidence 1267888999999999999877655
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-14 Score=136.86 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=98.3
Q ss_pred HHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC
Q psy2395 388 DLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY 467 (570)
Q Consensus 388 ~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~ 467 (570)
..++.....++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++|+..++ . .+++++++|+.......
T Consensus 13 ~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~--~-~~v~~~~~~~~~l~~~~ 86 (185)
T 3mti_A 13 HDFLAEVLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLG--I-ENTELILDGHENLDHYV 86 (185)
T ss_dssp HHHHHTTCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHT--C-CCEEEEESCGGGGGGTC
T ss_pred HHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcC--C-CcEEEEeCcHHHHHhhc
Confidence 3333334457889999999999999999976 4799999999999999999998753 2 46999997775432233
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC------CHHHHH
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------QSNLVR 541 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------~~~~l~ 541 (570)
+++||+|++|++|.+..... .. ........+++.+.+.|+|||++++.+... ....+.
T Consensus 87 ~~~fD~v~~~~~~~~~~~~~-----~~-----------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~ 150 (185)
T 3mti_A 87 REPIRAAIFNLGYLPSADKS-----VI-----------TKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVL 150 (185)
T ss_dssp CSCEEEEEEEEC---------------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHH
T ss_pred cCCcCEEEEeCCCCCCcchh-----cc-----------cChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHH
Confidence 57899999999887642210 00 011344678899999999999998865322 224455
Q ss_pred HHHHH---CCCeeEEE
Q psy2395 542 KLLFK---YGFSDIKS 554 (570)
Q Consensus 542 ~ll~~---~Gf~~i~~ 554 (570)
+++.. .+|.....
T Consensus 151 ~~~~~l~~~~~~~~~~ 166 (185)
T 3mti_A 151 EYVIGLDQRVFTAMLY 166 (185)
T ss_dssp HHHHHSCTTTEEEEEE
T ss_pred HHHHhCCCceEEEEEe
Confidence 55654 35766543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-14 Score=138.55 Aligned_cols=122 Identities=14% Similarity=0.203 Sum_probs=101.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||+|.+++.+++.++ ..+|+|+|+|+.+++.|++|+..++ -.+++++++|+.+.+.. .++||+|
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~~D~i 112 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFV---ARNVTLVEAFAPEGLDD-LPDPDRV 112 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHT---CTTEEEEECCTTTTCTT-SCCCSEE
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeCChhhhhhc-CCCCCEE
Confidence 35678999999999999999999875 5899999999999999999998753 14699999999765543 2679999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf 549 (570)
++++++. .+..+++.+.+.|+|||++++.... ...+.+.+++.+.||
T Consensus 113 ~~~~~~~----------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 113 FIGGSGG----------------------------MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp EESCCTT----------------------------CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred EECCCCc----------------------------CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence 9987642 2368899999999999999987543 567788899999998
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=153.80 Aligned_cols=178 Identities=14% Similarity=0.212 Sum_probs=127.8
Q ss_pred CCceeecCc-ccccCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEE
Q psy2395 354 EPIAYIIGK-KEFYGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIAT 428 (570)
Q Consensus 354 ~p~~~i~g~-~~f~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gv 428 (570)
.|.++|.+. ..++|..+.++..+.+|+++ ++.++...+.. .+++.+|||+|||+|.++..+++..+ ..+|+++
T Consensus 69 s~~q~i~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~-~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~v 146 (321)
T 2pt6_A 69 SKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTV-SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDIC 146 (321)
T ss_dssp CSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHHH-SSSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEE
T ss_pred CCCceEEEEEcCCCcEEEEECCEeeeCcccchHHHHHHHHHHHhc-CCCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEE
Confidence 678898886 47789999999999999977 45555433322 24567999999999999999997643 5799999
Q ss_pred eCCHHHHHHHHHHHHhhcccC-CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCC
Q psy2395 429 DISKFALKIAKKNAKKKLTKY-NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG 507 (570)
Q Consensus 429 Dis~~al~~A~~n~~~~~~~~-~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g 507 (570)
|+|+.+++.|++|+....... ..+++++++|+.+.+....++||+|++|++-.. .|..
T Consensus 147 Dis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d~~~p~-------------~~~~-------- 205 (321)
T 2pt6_A 147 EIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPI-------------GPAE-------- 205 (321)
T ss_dssp ESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEECCCSS-------------SGGG--------
T ss_pred ECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEECCcCCC-------------Ccch--------
Confidence 999999999999986421011 347999999997765443578999999974210 0100
Q ss_pred hHHH-HHHHHHHhhccccCeEEEEEEcC--CCHHHHHH---HHHHCCCeeEEEEe
Q psy2395 508 LSSI-KEIVKNASKYLVKNGLLLIEHGY--NQSNLVRK---LLFKYGFSDIKSWR 556 (570)
Q Consensus 508 l~~~-~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l~~---ll~~~Gf~~i~~~~ 556 (570)
..+ ..+++.+.+.|+|||++++..+. .+.+.+.. .+++ -|..+..+.
T Consensus 206 -~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~-~F~~v~~~~ 258 (321)
T 2pt6_A 206 -TLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKK-LFKKVEYAN 258 (321)
T ss_dssp -GGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHT-TCSEEEEEE
T ss_pred -hhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHH-HCCCeEEEE
Confidence 112 67888999999999999997643 34444444 4444 376666553
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=154.68 Aligned_cols=168 Identities=13% Similarity=0.210 Sum_probs=123.3
Q ss_pred CCCceee-cCcccccCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEE
Q psy2395 353 GEPIAYI-IGKKEFYGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIA 427 (570)
Q Consensus 353 ~~p~~~i-~g~~~f~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~g 427 (570)
..|.||| .+...|+|..+.++..+.+|+++ ++.++...+.. .+++.+|||+|||+|.++..+++..+ ..+|++
T Consensus 72 ~s~~q~I~v~~~~~~g~~l~ldg~~~~~~~de~~y~e~L~~l~l~~-~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~ 149 (334)
T 1xj5_A 72 KSDYQDVIVFQSATYGKVLVLDGVIQLTERDECAYQEMITHLPLCS-IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDM 149 (334)
T ss_dssp ECSSCEEEEEEESSSCEEEEETTEEEEETTTHHHHHHHHHHHHHTT-SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEE
T ss_pred ecCCeEEEEEEcCCCCeEEEECCEeecCcCcchHHHHHHHHHHHhh-CCCCCEEEEECCCccHHHHHHHHcCC-CCEEEE
Confidence 4789998 89999999999999999999865 45555433221 24567999999999999999997643 579999
Q ss_pred EeCCHHHHHHHHHHHHhhcccC-CCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccC
Q psy2395 428 TDISKFALKIAKKNAKKKLTKY-NIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYS 505 (570)
Q Consensus 428 vDis~~al~~A~~n~~~~~~~~-~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~ 505 (570)
+|+|+.+++.|++|+....... ..+++++++|+.+.++.. .++||+|++|++-... ..
T Consensus 150 VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~d~~~p~~--------------------~~ 209 (334)
T 1xj5_A 150 CEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSDPIG--------------------PA 209 (334)
T ss_dssp EESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCCTTS--------------------GG
T ss_pred EECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEECCCCccC--------------------cc
Confidence 9999999999999986421011 347999999997755432 3689999999752100 00
Q ss_pred CChHHHHHHHHHHhhccccCeEEEEEE--cCCCHHHHHHH
Q psy2395 506 NGLSSIKEIVKNASKYLVKNGLLLIEH--GYNQSNLVRKL 543 (570)
Q Consensus 506 ~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~l~~l 543 (570)
.+ .+...+++.+.++|+|||++++.. +..+...+...
T Consensus 210 ~~-l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~ 248 (334)
T 1xj5_A 210 KE-LFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDI 248 (334)
T ss_dssp GG-GGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHH
T ss_pred hh-hhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHH
Confidence 11 124788999999999999999853 44454443333
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.8e-15 Score=154.68 Aligned_cols=157 Identities=19% Similarity=0.171 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 381 PETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 381 ~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
|..+.+...++... ..++.+|||+|||+|.+++.++..+.+..+|+|+|+|+.+++.|++|+..++ .. +++|.++|
T Consensus 186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g--~~-~i~~~~~D 262 (354)
T 3tma_A 186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASG--LS-WIRFLRAD 262 (354)
T ss_dssp SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTT--CT-TCEEEECC
T ss_pred CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcC--CC-ceEEEeCC
Confidence 33344554444432 2467799999999999999999876225799999999999999999999753 22 69999999
Q ss_pred cccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHH
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL 539 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 539 (570)
+.+.. .....||+|++||||...... ..+....|..+++.+.+.|+|||.+++.++. ...
T Consensus 263 ~~~~~-~~~~~~D~Ii~npPyg~r~~~-----------------~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~--~~~ 322 (354)
T 3tma_A 263 ARHLP-RFFPEVDRILANPPHGLRLGR-----------------KEGLFHLYWDFLRGALALLPPGGRVALLTLR--PAL 322 (354)
T ss_dssp GGGGG-GTCCCCSEEEECCCSCC---------------------CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC--HHH
T ss_pred hhhCc-cccCCCCEEEECCCCcCccCC-----------------cccHHHHHHHHHHHHHHhcCCCcEEEEEeCC--HHH
Confidence 97643 334679999999999742110 0112356789999999999999999998764 334
Q ss_pred HHHHHHHCCCeeEEEEecCCCC
Q psy2395 540 VRKLLFKYGFSDIKSWRDLSGI 561 (570)
Q Consensus 540 l~~ll~~~Gf~~i~~~~D~~g~ 561 (570)
+..++. .||...+..+-+.|.
T Consensus 323 ~~~~~~-~g~~~~~~~~l~~g~ 343 (354)
T 3tma_A 323 LKRALP-PGFALRHARVVEQGG 343 (354)
T ss_dssp HHHHCC-TTEEEEEEEECCBTT
T ss_pred HHHHhh-cCcEEEEEEEEEeCC
Confidence 455555 899887766654443
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=5.2e-15 Score=158.82 Aligned_cols=162 Identities=14% Similarity=0.160 Sum_probs=113.6
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
++++.+.+..+...+ . ..++.+|||+|||+|..++.+|...+...+|+|+|+|+.+++.+++|+..++ ..+.+
T Consensus 83 ~~vQd~ss~l~a~~L-~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G----~~v~~ 155 (464)
T 3m6w_A 83 YYIQEPSAQAVGVLL-D--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWG----APLAV 155 (464)
T ss_dssp EEECCTTTHHHHHHH-C--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHC----CCCEE
T ss_pred EEEECHHHHHHHHhc-C--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC----CeEEE
Confidence 334444444444433 2 3567899999999999999999887545799999999999999999999853 23899
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeEEEEE
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+++|+.+......++||+|++|||+....... ..|........+.+ .....++..+.++|||||++++.
T Consensus 156 ~~~Da~~l~~~~~~~FD~Il~D~PcSg~G~~r-------r~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~Lvys 228 (464)
T 3m6w_A 156 TQAPPRALAEAFGTYFHRVLLDAPCSGEGMFR-------KDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYS 228 (464)
T ss_dssp ECSCHHHHHHHHCSCEEEEEEECCCCCGGGTT-------TCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred EECCHHHhhhhccccCCEEEECCCcCCccccc-------cChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 99998664332347899999999987543221 22222222122222 34478999999999999999886
Q ss_pred EcC----CCHHHHHHHHHHC-CCee
Q psy2395 532 HGY----NQSNLVRKLLFKY-GFSD 551 (570)
Q Consensus 532 ~~~----~~~~~l~~ll~~~-Gf~~ 551 (570)
+.. .+...+..++.++ +|..
T Consensus 229 TCs~~~eEne~vv~~~l~~~~~~~l 253 (464)
T 3m6w_A 229 TCTFAPEENEGVVAHFLKAHPEFRL 253 (464)
T ss_dssp ESCCCGGGTHHHHHHHHHHCTTEEE
T ss_pred eccCchhcCHHHHHHHHHHCCCcEE
Confidence 533 4556677777776 3543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-14 Score=139.17 Aligned_cols=145 Identities=14% Similarity=0.064 Sum_probs=112.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||+|.++..+++.+.+..+|+|+|+|+.+++.|++++..++ ..++.++++|+.+ ++..+++||+|
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~~~~~~fD~v 110 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---LKNVEVLKSEENK-IPLPDNTVDFI 110 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECBTTB-CSSCSSCEEEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---CCcEEEEeccccc-CCCCCCCeeEE
Confidence 3567799999999999999999887445799999999999999999998642 1269999999965 33335789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------------CCHHHHH
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-------------NQSNLVR 541 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-------------~~~~~l~ 541 (570)
+++..+... .....+++.+.++|+|||.+++.... ...+.+.
T Consensus 111 ~~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 165 (219)
T 3dh0_A 111 FMAFTFHEL-------------------------SEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVG 165 (219)
T ss_dssp EEESCGGGC-------------------------SSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHH
T ss_pred Eeehhhhhc-------------------------CCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHH
Confidence 997543311 12368899999999999999885421 2368899
Q ss_pred HHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 542 KLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.++.++||..+++. +..+...++++++
T Consensus 166 ~~l~~~Gf~~~~~~-~~~~~~~~~~~~k 192 (219)
T 3dh0_A 166 LILEDAGIRVGRVV-EVGKYCFGVYAMI 192 (219)
T ss_dssp HHHHHTTCEEEEEE-EETTTEEEEEEEC
T ss_pred HHHHHCCCEEEEEE-eeCCceEEEEEEe
Confidence 99999999988764 4566667777664
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=142.92 Aligned_cols=144 Identities=17% Similarity=0.167 Sum_probs=108.1
Q ss_pred hhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 381 PETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 381 ~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
|.+...++.++... ..++.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|++++...+ ...+++++++|
T Consensus 19 ~~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~v~~~~~d 94 (256)
T 1nkv_A 19 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHND 94 (256)
T ss_dssp SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESC
T ss_pred CCCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECC
Confidence 33344455555443 3567899999999999999999876 4699999999999999999998642 23469999999
Q ss_pred cccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-----
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----- 534 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----- 534 (570)
+.+. +. +++||+|+++......+ ....+++++.++|+|||++++..+.
T Consensus 95 ~~~~-~~-~~~fD~V~~~~~~~~~~-------------------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~ 147 (256)
T 1nkv_A 95 AAGY-VA-NEKCDVAACVGATWIAG-------------------------GFAGAEELLAQSLKPGGIMLIGEPYWRQLP 147 (256)
T ss_dssp CTTC-CC-SSCEEEEEEESCGGGTS-------------------------SSHHHHHHHTTSEEEEEEEEEEEEEETTCC
T ss_pred hHhC-Cc-CCCCCEEEECCChHhcC-------------------------CHHHHHHHHHHHcCCCeEEEEecCcccCCC
Confidence 9764 33 57899999954332111 1268899999999999999885421
Q ss_pred -----------------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 -----------------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 -----------------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
.....+.+++.++||..+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 185 (256)
T 1nkv_A 148 ATEEIAQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV 185 (256)
T ss_dssp SSHHHHHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred ChHHHHHHHhcccccccCCHHHHHHHHHHCCCeeEEEE
Confidence 123678899999999987654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=148.76 Aligned_cols=132 Identities=11% Similarity=0.155 Sum_probs=98.3
Q ss_pred HHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHh--cCCCcEEEEEeCCHHHHHHHHHHHHhh---cccCC--------
Q psy2395 385 LLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIY--SKNKIEIIATDISKFALKIAKKNAKKK---LTKYN-------- 450 (570)
Q Consensus 385 ~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~--~~~~~~V~gvDis~~al~~A~~n~~~~---~~~~~-------- 450 (570)
.+++.++.... .++.+|||+|||||.+++.++.. .+ ..+|+|+|+|+.+++.|++|+..+ +....
T Consensus 38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1o9g_A 38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS 116 (250)
T ss_dssp HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence 56666665433 25679999999999999999987 43 479999999999999999998753 21000
Q ss_pred ---------------CCEE-------------EEEccccccccc----CCCceeEEEECCCCCCCCCcccCCCCcccccc
Q psy2395 451 ---------------IPIK-------------FIKSNWYNNLQN----YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPI 498 (570)
Q Consensus 451 ---------------~~v~-------------~~~~D~~~~l~~----~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~ 498 (570)
.+++ |.++|+++.... ...+||+|++||||+.......
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~---------- 186 (250)
T 1o9g_A 117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEG---------- 186 (250)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSS----------
T ss_pred hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccc----------
Confidence 0055 999999875431 2348999999999985432210
Q ss_pred ccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 499 NALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 499 ~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.++.+.+..+++.+.++|+|||++++ ++.
T Consensus 187 ------~~~~~~~~~~l~~~~~~LkpgG~l~~-~~~ 215 (250)
T 1o9g_A 187 ------QVPGQPVAGLLRSLASALPAHAVIAV-TDR 215 (250)
T ss_dssp ------CCCHHHHHHHHHHHHHHSCTTCEEEE-EES
T ss_pred ------cccccHHHHHHHHHHHhcCCCcEEEE-eCc
Confidence 24667889999999999999999998 443
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=141.78 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=104.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||+|||+|++++.+++.++ ..+|+|+|+|+.+++.|++|+..++ ...+++++++|+++.+.. ..+||+|
T Consensus 19 v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~g--l~~~I~v~~gD~l~~~~~-~~~~D~I 94 (244)
T 3gnl_A 19 ITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSG--LTEQIDVRKGNGLAVIEK-KDAIDTI 94 (244)
T ss_dssp CCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT--CTTTEEEEECSGGGGCCG-GGCCCEE
T ss_pred CCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCceEEEEecchhhccCc-cccccEE
Confidence 45678999999999999999998875 5789999999999999999999864 344699999999887653 2369998
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
++. + -|-+.+..++..+...|+++|+|++. |....+.++++|.++||..+.
T Consensus 95 via--------------------------g-mGg~lI~~IL~~~~~~L~~~~~lIlq-~~~~~~~lr~~L~~~Gf~i~~ 145 (244)
T 3gnl_A 95 VIA--------------------------G-MGGTLIRTILEEGAAKLAGVTKLILQ-PNIAAWQLREWSEQNNWLITS 145 (244)
T ss_dssp EEE--------------------------E-ECHHHHHHHHHHTGGGGTTCCEEEEE-ESSCHHHHHHHHHHHTEEEEE
T ss_pred EEe--------------------------C-CchHHHHHHHHHHHHHhCCCCEEEEE-cCCChHHHHHHHHHCCCEEEE
Confidence 861 1 13367899999999999999998765 456789999999999998754
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=140.76 Aligned_cols=126 Identities=13% Similarity=0.147 Sum_probs=99.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~I 474 (570)
++.+|||+|||+|.+++.++...+ +.+|+|+|+|+.+++.|++|+..++. .+++++++|+.+... ...++||+|
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~fD~V 145 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKDVRESYDIV 145 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCEEEEeccHHHhcccccccCCccEE
Confidence 567999999999999999997654 68999999999999999999987532 259999999965321 114689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHH---HHHHHHHHCCCee
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSN---LVRKLLFKYGFSD 551 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~l~~ll~~~Gf~~ 551 (570)
+++.. ..+..+++.+.++|+|||++++..+....+ .+.+.+...||..
T Consensus 146 ~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 146 TARAV-----------------------------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (240)
T ss_dssp EEECC-----------------------------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred EEecc-----------------------------CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeE
Confidence 99541 124789999999999999999887765544 3556778899987
Q ss_pred EEEE
Q psy2395 552 IKSW 555 (570)
Q Consensus 552 i~~~ 555 (570)
+...
T Consensus 197 ~~~~ 200 (240)
T 1xdz_A 197 ENIH 200 (240)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 6654
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.7e-15 Score=144.02 Aligned_cols=138 Identities=20% Similarity=0.200 Sum_probs=110.7
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
..+|+|.++.+++.++.....++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++.. ++++
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~--------~~~~ 95 (226)
T 3m33_A 27 RVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARANAP--------HADV 95 (226)
T ss_dssp CEESSSCTTHHHHHHHHHHCCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHCT--------TSEE
T ss_pred cccCCCCHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhCC--------CceE
Confidence 3457787888888777655567889999999999999999976 3699999999999999998821 4899
Q ss_pred EEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 456 IKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 456 ~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+++|+.+.++.. +++||+|++++.. ..+++.+.+.|+|||+++...+.
T Consensus 96 ~~~d~~~~~~~~~~~~fD~v~~~~~~-------------------------------~~~l~~~~~~LkpgG~l~~~~~~ 144 (226)
T 3m33_A 96 YEWNGKGELPAGLGAPFGLIVSRRGP-------------------------------TSVILRLPELAAPDAHFLYVGPR 144 (226)
T ss_dssp EECCSCSSCCTTCCCCEEEEEEESCC-------------------------------SGGGGGHHHHEEEEEEEEEEESS
T ss_pred EEcchhhccCCcCCCCEEEEEeCCCH-------------------------------HHHHHHHHHHcCCCcEEEEeCCc
Confidence 999997666654 5799999997311 24456778899999999955566
Q ss_pred CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 ~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
.....+.+.+.++||..+.+.
T Consensus 145 ~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 145 LNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp SCCTHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHCCCeEEEEE
Confidence 677789999999999987654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-14 Score=143.23 Aligned_cols=147 Identities=14% Similarity=0.209 Sum_probs=110.5
Q ss_pred Ceeeeec--CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 367 GLVLNIT--SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 367 ~~~~~v~--~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
|..|.++ ..+|.|+-.++.. .+.. ...++.+|||+|||+|.+++.+|+.+ .++|+|+|+||.+++.+++|++.
T Consensus 96 G~~~~~D~~k~~f~~~~~~er~--ri~~-~~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~ 170 (278)
T 3k6r_A 96 GIKYKLDVAKIMFSPANVKERV--RMAK-VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHL 170 (278)
T ss_dssp TEEEEEETTTSCCCGGGHHHHH--HHHH-HCCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHH
T ss_pred CEEEEEeccceEEcCCcHHHHH--HHHH-hcCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHH
Confidence 4455444 5678888666542 1222 24578899999999999999999876 46999999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
|+ ...+++++++|+.+... .+.||.|++|||+.. ..++..+.++|++
T Consensus 171 N~--v~~~v~~~~~D~~~~~~--~~~~D~Vi~~~p~~~-----------------------------~~~l~~a~~~lk~ 217 (278)
T 3k6r_A 171 NK--VEDRMSAYNMDNRDFPG--ENIADRILMGYVVRT-----------------------------HEFIPKALSIAKD 217 (278)
T ss_dssp TT--CTTTEEEECSCTTTCCC--CSCEEEEEECCCSSG-----------------------------GGGHHHHHHHEEE
T ss_pred cC--CCCcEEEEeCcHHHhcc--ccCCCEEEECCCCcH-----------------------------HHHHHHHHHHcCC
Confidence 74 34579999999977544 378999999998642 2345566679999
Q ss_pred CeEEEEE-E-c-----CCCHHHHHHHHHHCCCee
Q psy2395 525 NGLLLIE-H-G-----YNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 525 gG~l~~~-~-~-----~~~~~~l~~ll~~~Gf~~ 551 (570)
||++.+. + + ....+.+.+++...|+..
T Consensus 218 gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v 251 (278)
T 3k6r_A 218 GAIIHYHNTVPEKLMPREPFETFKRITKEYGYDV 251 (278)
T ss_dssp EEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEE
T ss_pred CCEEEEEeeecccccchhHHHHHHHHHHHcCCcE
Confidence 9998652 2 1 233567788888899874
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2e-14 Score=133.93 Aligned_cols=143 Identities=16% Similarity=0.115 Sum_probs=106.7
Q ss_pred CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE
Q psy2395 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK 454 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~ 454 (570)
+.++++.....+++.+ ...++.+|||+|||+|.++..++...+ +.+|+|+|+|+.+++.|++|+..++ ...++
T Consensus 6 g~~t~~~~~~~~~~~~---~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~- 78 (178)
T 3hm2_A 6 GQLTKQHVRALAISAL---APKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLG--VSDRI- 78 (178)
T ss_dssp CCSHHHHHHHHHHHHH---CCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTT--CTTSE-
T ss_pred CcccHHHHHHHHHHHh---cccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhC--CCCCE-
Confidence 4444444444444333 234667999999999999999998764 6899999999999999999998642 22368
Q ss_pred EEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 455 FIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 455 ~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
++++|+.+.++...++||+|+++.++.. ..+++.+.+.|+|||++++....
T Consensus 79 ~~~~d~~~~~~~~~~~~D~i~~~~~~~~-----------------------------~~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 79 AVQQGAPRAFDDVPDNPDVIFIGGGLTA-----------------------------PGVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp EEECCTTGGGGGCCSCCSEEEECC-TTC-----------------------------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred EEecchHhhhhccCCCCCEEEECCcccH-----------------------------HHHHHHHHHhcCCCCEEEEEeec
Confidence 8889987766654478999999876531 35677888899999999886643
Q ss_pred -CCHHHHHHHHHHCCCeeEE
Q psy2395 535 -NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 535 -~~~~~l~~ll~~~Gf~~i~ 553 (570)
.....+..++.+.|+....
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~ 149 (178)
T 3hm2_A 130 VESEQMLWALRKQFGGTISS 149 (178)
T ss_dssp HHHHHHHHHHHHHHCCEEEE
T ss_pred cccHHHHHHHHHHcCCeeEE
Confidence 4566778888888887654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=164.57 Aligned_cols=138 Identities=15% Similarity=0.211 Sum_probs=106.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||||.+++.++..+ ..+|+++|+|+.+++.|++|+..|+.. ..+++++++|+++.++...++||+|++
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~-~~~v~~i~~D~~~~l~~~~~~fD~Ii~ 615 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLT-GRAHRLIQADCLAWLREANEQFDLIFI 615 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCC-STTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCC-ccceEEEecCHHHHHHhcCCCccEEEE
Confidence 57799999999999999999754 358999999999999999999986421 136999999998866554578999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCee
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~ 551 (570)
||||+...... ....++...+..++..+.++|+|||++++.++........+.+.+.||..
T Consensus 616 DPP~f~~~~~~--------------~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~~~g~~~ 676 (703)
T 3v97_A 616 DPPTFSNSKRM--------------EDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKA 676 (703)
T ss_dssp CCCSBC---------------------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHHHTTEEE
T ss_pred CCccccCCccc--------------hhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHHHcCCce
Confidence 99987543210 00113346789999999999999999999887744444467788888863
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-14 Score=144.85 Aligned_cols=150 Identities=15% Similarity=0.127 Sum_probs=105.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||+|..+..++...++..+|+|+|+|+.+++.+++|+..++. .++.++++|+.+... ..++||+|
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---~~v~~~~~D~~~~~~-~~~~fD~I 191 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---LNVILFHSSSLHIGE-LNVEFDKI 191 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---CSEEEESSCGGGGGG-GCCCEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---CeEEEEECChhhccc-ccccCCEE
Confidence 35678999999999999999998765457999999999999999999987532 259999999966433 34689999
Q ss_pred EECCCCCCCCCcccCCCCc-cccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHHHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDL-RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKLLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~-~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ll~~~Gf 549 (570)
++|||+.........+... .+.+. ...........+++.+.++|||||++++.+.. .+...+..++++.||
T Consensus 192 l~d~Pcsg~g~~~~~p~~~~~~~~~----~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l~~~~~ 267 (315)
T 1ixk_A 192 LLDAPCTGSGTIHKNPERKWNRTMD----DIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDV 267 (315)
T ss_dssp EEECCTTSTTTCC--------CCHH----HHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHHHSSE
T ss_pred EEeCCCCCcccccCChhHhhcCCHH----HHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHHhcCCC
Confidence 9999976443221111110 01110 00111234578999999999999999885532 345566778888887
Q ss_pred eeE
Q psy2395 550 SDI 552 (570)
Q Consensus 550 ~~i 552 (570)
..+
T Consensus 268 ~~~ 270 (315)
T 1ixk_A 268 ELL 270 (315)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=137.66 Aligned_cols=141 Identities=11% Similarity=0.092 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
+....++..++.. .++.+|||+|||+|..++.+++..+++++|+|+|+|+.+++.|++|+..++ ...+++++++|+
T Consensus 44 ~~~~~~l~~l~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~ 119 (221)
T 3u81_A 44 DAKGQIMDAVIRE--YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAG--LQDKVTILNGAS 119 (221)
T ss_dssp HHHHHHHHHHHHH--HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcC--CCCceEEEECCH
Confidence 4555555555443 256799999999999999999876546899999999999999999998753 234699999998
Q ss_pred ccccccCC-----CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC
Q psy2395 461 YNNLQNYK-----KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY 534 (570)
Q Consensus 461 ~~~l~~~~-----~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~ 534 (570)
.+.++... ++||+|+++.+.. .......++..+ ++|+|||++++.. ..
T Consensus 120 ~~~l~~~~~~~~~~~fD~V~~d~~~~-------------------------~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 120 QDLIPQLKKKYDVDTLDMVFLDHWKD-------------------------RYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp HHHGGGTTTTSCCCCCSEEEECSCGG-------------------------GHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred HHHHHHHHHhcCCCceEEEEEcCCcc-------------------------cchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 76555433 5899999975421 011234566666 9999999998743 23
Q ss_pred CCHHHHHHHHHHCC-Cee
Q psy2395 535 NQSNLVRKLLFKYG-FSD 551 (570)
Q Consensus 535 ~~~~~l~~ll~~~G-f~~ 551 (570)
.....+.+++.+.. |..
T Consensus 174 ~~~~~~~~~l~~~~~~~~ 191 (221)
T 3u81_A 174 PGTPDFLAYVRGSSSFEC 191 (221)
T ss_dssp CCCHHHHHHHHHCTTEEE
T ss_pred cchHHHHHHHhhCCCceE
Confidence 33456677777654 443
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=151.32 Aligned_cols=145 Identities=21% Similarity=0.101 Sum_probs=108.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||+|.+++.++..++ ..+|+|+|+|+.+++.|++|+..++ ...++++.++|+.+. +...++||+|
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~g--l~~~i~~~~~D~~~~-~~~~~~fD~I 290 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAG--VLDKIKFIQGDATQL-SQYVDSVDFA 290 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTT--CGGGCEEEECCGGGG-GGTCSCEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhhC-CcccCCcCEE
Confidence 34678999999999999999998764 3489999999999999999998753 223699999999763 3334789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
++||||...... ...-.+.|..+++.+.++| +|.+++.++ ....+.+.+.+.||...+.
T Consensus 291 i~npPyg~r~~~-----------------~~~~~~ly~~~~~~l~r~l--~g~~~~i~~--~~~~~~~~~~~~G~~~~~~ 349 (373)
T 3tm4_A 291 ISNLPYGLKIGK-----------------KSMIPDLYMKFFNELAKVL--EKRGVFITT--EKKAIEEAIAENGFEIIHH 349 (373)
T ss_dssp EEECCCC-----------------------CCHHHHHHHHHHHHHHHE--EEEEEEEES--CHHHHHHHHHHTTEEEEEE
T ss_pred EECCCCCcccCc-----------------chhHHHHHHHHHHHHHHHc--CCeEEEEEC--CHHHHHHHHHHcCCEEEEE
Confidence 999999743210 0011245788999999988 666666554 4566778888999998887
Q ss_pred EecCCCCceE
Q psy2395 555 WRDLSGIERV 564 (570)
Q Consensus 555 ~~D~~g~~R~ 564 (570)
.+-..|.-.+
T Consensus 350 ~~~~nG~l~~ 359 (373)
T 3tm4_A 350 RVIGHGGLMV 359 (373)
T ss_dssp EEEEETTEEE
T ss_pred EEEEcCCEEE
Confidence 7766665543
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-14 Score=148.59 Aligned_cols=162 Identities=18% Similarity=0.268 Sum_probs=114.4
Q ss_pred cCeeeeecCC------ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 366 YGLVLNITSD------VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 366 ~~~~~~v~~~------~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.|..|.+++. .|....+...++..+ .++.+|||+|||+|.+++.++..+ ..+|+|+|+|+.+++.|+
T Consensus 188 ~g~~f~v~~~~~~~tgff~~~~~~~~~l~~~-----~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~ 260 (396)
T 3c0k_A 188 HGMKLLVDIQHGHKTGYYLDQRDSRLATRRY-----VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIAR 260 (396)
T ss_dssp TTEEEEECTTTSSTTSSCGGGHHHHHHHHHH-----CTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHH
T ss_pred CCEEEEEeccccccCCcCcCHHHHHHHHHHh-----hCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHH
Confidence 5788888874 443333333333222 357799999999999999999864 369999999999999999
Q ss_pred HHHHhhcccCCCCEEEEEcccccccccC---CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
+|+..|+.. ..+++|+++|+.+.+... ..+||+|++||||+...... -.+....+..++.
T Consensus 261 ~n~~~ngl~-~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~----------------~~~~~~~~~~~l~ 323 (396)
T 3c0k_A 261 QNVELNKLD-LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQ----------------LMGACRGYKDINM 323 (396)
T ss_dssp HHHHHTTCC-GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSS----------------SSCCCTHHHHHHH
T ss_pred HHHHHcCCC-ccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhH----------------HHHHHHHHHHHHH
Confidence 999985320 126999999997754421 36899999999987543210 0122345678999
Q ss_pred HHhhccccCeEEEEEEcCCC------HHHHHHHHHHCCCee
Q psy2395 517 NASKYLVKNGLLLIEHGYNQ------SNLVRKLLFKYGFSD 551 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~~~------~~~l~~ll~~~Gf~~ 551 (570)
.+.+.|+|||++++.+.... ...+.+.+.+.|+..
T Consensus 324 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ 364 (396)
T 3c0k_A 324 LAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDV 364 (396)
T ss_dssp HHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred HHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeE
Confidence 99999999999998765432 223445666777543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-14 Score=139.41 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=108.9
Q ss_pred HHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 384 ELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 384 ~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
......++..+. .++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.|++++..++ ...+++++++|+.
T Consensus 31 ~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~ 106 (257)
T 3f4k_A 31 PEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKAN--CADRVKGITGSMD 106 (257)
T ss_dssp HHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTT
T ss_pred HHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChh
Confidence 344444544432 4667999999999999999999874 499999999999999999998753 3345999999995
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------- 534 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------- 534 (570)
+ ++..+++||+|+++..+... ....+++.+.++|+|||++++..+.
T Consensus 107 ~-~~~~~~~fD~v~~~~~l~~~--------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~ 159 (257)
T 3f4k_A 107 N-LPFQNEELDLIWSEGAIYNI--------------------------GFERGMNEWSKYLKKGGFIAVSEASWFTSERP 159 (257)
T ss_dssp S-CSSCTTCEEEEEEESCSCCC--------------------------CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCC
T ss_pred h-CCCCCCCEEEEEecChHhhc--------------------------CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCh
Confidence 4 44445799999997654321 1367899999999999999886421
Q ss_pred --------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 --------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 --------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+.+++.++||..+....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (257)
T 3f4k_A 160 AEIEDFWMDAYPEISVIPTCIDKMERAGYTPTAHFI 195 (257)
T ss_dssp HHHHHHHHHHCTTCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 1346788999999999987653
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-14 Score=152.23 Aligned_cols=148 Identities=18% Similarity=0.178 Sum_probs=109.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||+|..++.+|...+...+|+|+|+|+.+++.+++|+.+++. .++.++++|+.+......++||+|
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---~nv~v~~~Da~~l~~~~~~~FD~I 179 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---SNAIVTNHAPAELVPHFSGFFDRI 179 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---SSEEEECCCHHHHHHHHTTCEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CceEEEeCCHHHhhhhccccCCEE
Confidence 35678999999999999999998765457999999999999999999998642 259999999866433234789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHHHHH
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKLLFK 546 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ll~~ 546 (570)
++|||+..... ++..|........+.+ .....++..+.++|+|||++++.+.. .+...+..++.+
T Consensus 180 l~DaPCSg~G~-------~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~~l~~ 252 (456)
T 3m4x_A 180 VVDAPCSGEGM-------FRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVEN 252 (456)
T ss_dssp EEECCCCCGGG-------TTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCCGGGTHHHHHHHHHH
T ss_pred EECCCCCCccc-------cccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecccccCHHHHHHHHHh
Confidence 99999865432 2223333222222222 34458999999999999999886532 456677888888
Q ss_pred CCCeeE
Q psy2395 547 YGFSDI 552 (570)
Q Consensus 547 ~Gf~~i 552 (570)
++|..+
T Consensus 253 ~~~~l~ 258 (456)
T 3m4x_A 253 YPVTIE 258 (456)
T ss_dssp SSEEEE
T ss_pred CCCEEE
Confidence 876543
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-14 Score=135.50 Aligned_cols=142 Identities=15% Similarity=0.209 Sum_probs=102.7
Q ss_pred cccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 377 LIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 377 ~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
..|......++..+......++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|++|+..+ +.+++++
T Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~ 102 (207)
T 1wy7_A 29 RTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEF----KGKFKVF 102 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGG----TTSEEEE
T ss_pred cCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHc----CCCEEEE
Confidence 3455556666655543323467899999999999999999874 358999999999999999999864 3379999
Q ss_pred EcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCC
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYN 535 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~ 535 (570)
++|+.+ ++ .+||+|++||||+.... + ....+++.+.+.| ||.+++.+ +..
T Consensus 103 ~~d~~~-~~---~~~D~v~~~~p~~~~~~---------------------~--~~~~~l~~~~~~l--~~~~~~~~~~~~ 153 (207)
T 1wy7_A 103 IGDVSE-FN---SRVDIVIMNPPFGSQRK---------------------H--ADRPFLLKAFEIS--DVVYSIHLAKPE 153 (207)
T ss_dssp ESCGGG-CC---CCCSEEEECCCCSSSST---------------------T--TTHHHHHHHHHHC--SEEEEEEECCHH
T ss_pred ECchHH-cC---CCCCEEEEcCCCccccC---------------------C--chHHHHHHHHHhc--CcEEEEEeCCcC
Confidence 999966 32 58999999999975321 1 1145677777777 55443333 444
Q ss_pred CHHHHHHHHHHCCCeeEE
Q psy2395 536 QSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 536 ~~~~l~~ll~~~Gf~~i~ 553 (570)
..+.+.+.+.+.||....
T Consensus 154 ~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 154 VRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp HHHHHHHHHHHTTEEEEE
T ss_pred CHHHHHHHHHHCCCeEEE
Confidence 556677888899987643
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.5e-14 Score=141.72 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=107.1
Q ss_pred HHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 387 VDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 387 ~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
...++..+. .++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++...+ ...+++++++|+.+ +
T Consensus 34 ~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~ 108 (267)
T 3kkz_A 34 TLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQSG--LQNRVTGIVGSMDD-L 108 (267)
T ss_dssp HHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTC--SSEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTS-C
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhcc--CCEEEEEeCCHHHHHHHHHHHHHcC--CCcCcEEEEcChhh-C
Confidence 344444433 567899999999999999999873 5799999999999999999988642 23469999999965 4
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------- 534 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------- 534 (570)
+...++||+|+++.++... ....+++.+.++|+|||++++....
T Consensus 109 ~~~~~~fD~i~~~~~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 162 (267)
T 3kkz_A 109 PFRNEELDLIWSEGAIYNI--------------------------GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEI 162 (267)
T ss_dssp CCCTTCEEEEEESSCGGGT--------------------------CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHH
T ss_pred CCCCCCEEEEEEcCCceec--------------------------CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHH
Confidence 4335789999998764321 1367899999999999999885421
Q ss_pred -----------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 -----------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 -----------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+.+++.++||..+.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 163 NDFWMDAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp HHHHHHHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 1245788899999999987654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-14 Score=143.21 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=101.9
Q ss_pred cCeeeeecCCc--cccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 366 YGLVLNITSDV--LIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 366 ~~~~~~v~~~~--~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
.|..|.++++. +.|+..++.+.. +. ...++.+|||+|||+|.+++.+++.++ ..+|+|+|+|+.+++.|++|+.
T Consensus 89 ~g~~f~~~~~~~f~~~~~~~e~~~~--~~-~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~ 164 (272)
T 3a27_A 89 YGCLFKLDVAKIMWSQGNIEERKRM--AF-ISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIK 164 (272)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHHHH--HT-SCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHH
T ss_pred CCEEEEEechhEEECCCchHHHHHH--HH-hcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHH
Confidence 57888888877 566666665532 22 235678999999999999999998864 5799999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.|+. .++.++++|+.+. +. .++||+|++|||+. +..++..+.+.|+
T Consensus 165 ~n~l---~~~~~~~~d~~~~-~~-~~~~D~Vi~d~p~~-----------------------------~~~~l~~~~~~Lk 210 (272)
T 3a27_A 165 LNKL---NNVIPILADNRDV-EL-KDVADRVIMGYVHK-----------------------------THKFLDKTFEFLK 210 (272)
T ss_dssp HTTC---SSEEEEESCGGGC-CC-TTCEEEEEECCCSS-----------------------------GGGGHHHHHHHEE
T ss_pred HcCC---CCEEEEECChHHc-Cc-cCCceEEEECCccc-----------------------------HHHHHHHHHHHcC
Confidence 8532 2588999999775 43 46899999999961 1345667778999
Q ss_pred cCeEEEEEEc
Q psy2395 524 KNGLLLIEHG 533 (570)
Q Consensus 524 pgG~l~~~~~ 533 (570)
|||++++.+.
T Consensus 211 pgG~l~~s~~ 220 (272)
T 3a27_A 211 DRGVIHYHET 220 (272)
T ss_dssp EEEEEEEEEE
T ss_pred CCCEEEEEEc
Confidence 9999988553
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=147.89 Aligned_cols=159 Identities=22% Similarity=0.176 Sum_probs=117.7
Q ss_pred cCeeeeecCC--ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 366 YGLVLNITSD--VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 366 ~~~~~~v~~~--~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
.|..|.+++. .|.++..++.+ .+... ..++.+|||+|||+|.+++. ++ . ..+|+|+|+|+.+++.|++|+.
T Consensus 165 ~g~~f~~d~~~~~~~~~~~~er~--~i~~~-~~~~~~VLDlg~G~G~~~l~-a~-~--~~~V~~vD~s~~ai~~a~~n~~ 237 (336)
T 2yx1_A 165 NGYRLWVDIAKVYFSPRLGGERA--RIMKK-VSLNDVVVDMFAGVGPFSIA-CK-N--AKKIYAIDINPHAIELLKKNIK 237 (336)
T ss_dssp TTEEEEEETTTSCCCGGGHHHHH--HHHHH-CCTTCEEEETTCTTSHHHHH-TT-T--SSEEEEEESCHHHHHHHHHHHH
T ss_pred CCEEEEEehHHhccCCccHHHHH--HHHHh-cCCCCEEEEccCccCHHHHh-cc-C--CCEEEEEECCHHHHHHHHHHHH
Confidence 4677777765 45555555554 33333 24678999999999999999 86 2 5799999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.|+ ...+++++++|+.+.+ ++||+|++|||+.. ..++..+.++|+
T Consensus 238 ~n~--l~~~v~~~~~D~~~~~----~~fD~Vi~dpP~~~-----------------------------~~~l~~~~~~L~ 282 (336)
T 2yx1_A 238 LNK--LEHKIIPILSDVREVD----VKGNRVIMNLPKFA-----------------------------HKFIDKALDIVE 282 (336)
T ss_dssp HTT--CTTTEEEEESCGGGCC----CCEEEEEECCTTTG-----------------------------GGGHHHHHHHEE
T ss_pred HcC--CCCcEEEEECChHHhc----CCCcEEEECCcHhH-----------------------------HHHHHHHHHHcC
Confidence 863 2236999999997754 68999999999752 245667778999
Q ss_pred cCeEEEEE-EcCCCHHHHHHHHHHC-CCee--EEEEecCCCCceEEEE
Q psy2395 524 KNGLLLIE-HGYNQSNLVRKLLFKY-GFSD--IKSWRDLSGIERVTQG 567 (570)
Q Consensus 524 pgG~l~~~-~~~~~~~~l~~ll~~~-Gf~~--i~~~~D~~g~~R~~~~ 567 (570)
|||++++. +... ...+.+.+.+. ||.. +...++++...+.++.
T Consensus 283 ~gG~l~~~~~~~~-~~~~~~~l~~~~~~~i~~~~~v~~~~p~~~~~~~ 329 (336)
T 2yx1_A 283 EGGVIHYYTIGKD-FDKAIKLFEKKCDCEVLEKRIVKSYAPREYILAL 329 (336)
T ss_dssp EEEEEEEEEEESS-SHHHHHHHHHHSEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEeecC-chHHHHHHHHhcCCcEEEEEEEeccCCCCCEEEE
Confidence 99998774 4444 56667777776 7764 4566777776665543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-14 Score=141.86 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=105.5
Q ss_pred HHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 390 ~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
++..+..++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...+ ...+++++++|+.+.....++
T Consensus 61 ~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~ 135 (285)
T 4htf_A 61 VLAEMGPQKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKG--VSDNMQFIHCAAQDVASHLET 135 (285)
T ss_dssp HHHHTCSSCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-C--CGGGEEEEESCGGGTGGGCSS
T ss_pred HHHhcCCCCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcC--CCcceEEEEcCHHHhhhhcCC
Confidence 33434455779999999999999999976 3699999999999999999998642 224699999999765434458
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------- 534 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------- 534 (570)
+||+|+++..+...+ ....+++.+.++|+|||++++....
T Consensus 136 ~fD~v~~~~~l~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 190 (285)
T 4htf_A 136 PVDLILFHAVLEWVA-------------------------DPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFD 190 (285)
T ss_dssp CEEEEEEESCGGGCS-------------------------CHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHH
T ss_pred CceEEEECchhhccc-------------------------CHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHH
Confidence 999999975432111 2367899999999999999886531
Q ss_pred -------------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 -------------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 -------------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
...+.+.+++.++||.++.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~ 231 (285)
T 4htf_A 191 YVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTG 231 (285)
T ss_dssp HHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHhhhccccccccCCCCCCCCHHHHHHHHHHCCCceeeeee
Confidence 1247899999999999886653
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=136.77 Aligned_cols=134 Identities=17% Similarity=0.238 Sum_probs=104.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++...+ +.+|+|+|+|+.+++.|++++.. .. ++.++++|+.+.... ++||+|+
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~----~~-~~~~~~~d~~~~~~~--~~fD~v~ 114 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRG----NL-KVKYIEADYSKYDFE--EKYDMVV 114 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCS----CT-TEEEEESCTTTCCCC--SCEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhcc----CC-CEEEEeCchhccCCC--CCceEEE
Confidence 4678999999999999999999875 58999999999999999999864 22 799999999664322 7899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++.++...+ ......+++++.+.|+|||++++....
T Consensus 115 ~~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (234)
T 3dtn_A 115 SALSIHHLE-----------------------DEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVEN 171 (234)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHT
T ss_pred EeCccccCC-----------------------HHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHh
Confidence 976543211 012346899999999999999885411
Q ss_pred --------------------CCHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 535 --------------------NQSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 535 --------------------~~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
...+.+.++|+++||..++++....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~ 217 (234)
T 3dtn_A 172 SGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCIYKYYQ 217 (234)
T ss_dssp SSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEEEEETT
T ss_pred cCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeeeeeecc
Confidence 12356677999999999988765444
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-14 Score=149.10 Aligned_cols=158 Identities=16% Similarity=0.214 Sum_probs=109.4
Q ss_pred cCeeeeecCC------ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 366 YGLVLNITSD------VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 366 ~~~~~~v~~~------~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.|..|.++.. .|.....+..++.. ...++.+|||+|||||.+++.++..+ +.|+|+|+|+.+++.|+
T Consensus 181 ~g~~f~vd~~~~~~tG~f~dqr~~r~~l~~----~~~~g~~VLDlg~GtG~~sl~~a~~g---a~V~avDis~~al~~a~ 253 (393)
T 4dmg_A 181 DGLRFPIPLALAQKTGYYLDQRENRRLFEA----MVRPGERVLDVYSYVGGFALRAARKG---AYALAVDKDLEALGVLD 253 (393)
T ss_dssp TTEEEEEETTTCCTTSSCGGGHHHHHHHHT----TCCTTCEEEEESCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHH
T ss_pred CCEEEEEechhccccCcCCCHHHHHHHHHH----HhcCCCeEEEcccchhHHHHHHHHcC---CeEEEEECCHHHHHHHH
Confidence 3666666643 45444444433322 23457899999999999999999864 45999999999999999
Q ss_pred HHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
+|+..|+ ....+.++|+++.+....+.||+|++|||++..... ...+....+..++..+.
T Consensus 254 ~n~~~ng----~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~~~~----------------~~~~~~~~~~~ll~~a~ 313 (393)
T 4dmg_A 254 QAALRLG----LRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVKRPE----------------ELPAMKRHLVDLVREAL 313 (393)
T ss_dssp HHHHHHT----CCCEEEESCHHHHHHTCCCCEEEEEECCCCCCSSGG----------------GHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCCcEEEccHHHHHHHhcCCCCEEEECCCcCCCCHH----------------HHHHHHHHHHHHHHHHH
Confidence 9999864 234577999987664434459999999998754311 00123456788999999
Q ss_pred hccccCeEEEEEEcCC--CHH----HHHHHHHHCCCe
Q psy2395 520 KYLVKNGLLLIEHGYN--QSN----LVRKLLFKYGFS 550 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~~--~~~----~l~~ll~~~Gf~ 550 (570)
++|+|||++++..... ..+ .+.+.+.+.|..
T Consensus 314 ~~LkpGG~Lv~~s~s~~~~~~~f~~~v~~a~~~~g~~ 350 (393)
T 4dmg_A 314 RLLAEEGFLWLSSCSYHLRLEDLLEVARRAAADLGRR 350 (393)
T ss_dssp HTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHhCCe
Confidence 9999999998654332 233 344455555644
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=133.22 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=100.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+..++ ...+++++++|+.+.+.. ..+||+|
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~~~~~~~-~~~~D~v 126 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYG--LSPRMRAVQGTAPAALAD-LPLPEAV 126 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCTTGGGTT-SCCCSEE
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCEEEEeCchhhhccc-CCCCCEE
Confidence 356789999999999999999976 3799999999999999999998753 222699999999775543 2579999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHHHHHHHCCCeeEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~~ll~~~Gf~~i~ 553 (570)
++++.. ... +++.+.+.|+|||++++... ......+.+++++.||....
T Consensus 127 ~~~~~~-----------------------------~~~-~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~i~~ 176 (204)
T 3njr_A 127 FIGGGG-----------------------------SQA-LYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHGGQLLR 176 (204)
T ss_dssp EECSCC-----------------------------CHH-HHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHCSEEEE
T ss_pred EECCcc-----------------------------cHH-HHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCCCcEEE
Confidence 997522 124 88899999999999998764 35677788899999987655
Q ss_pred E
Q psy2395 554 S 554 (570)
Q Consensus 554 ~ 554 (570)
+
T Consensus 177 i 177 (204)
T 3njr_A 177 I 177 (204)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=3.2e-13 Score=144.59 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=125.1
Q ss_pred cchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc
Q psy2395 379 PRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~ 458 (570)
+...+..++..+ . ..++.+|||+|||+|..+..++...+ +.+|+|+|+|+.+++.+++|+..+ +.++.++++
T Consensus 231 qd~~s~~~~~~l-~--~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~----g~~~~~~~~ 302 (429)
T 1sqg_A 231 QDASAQGCMTWL-A--PQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRL----GMKATVKQG 302 (429)
T ss_dssp CCHHHHTHHHHH-C--CCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHT----TCCCEEEEC
T ss_pred eCHHHHHHHHHc-C--CCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHc----CCCeEEEeC
Confidence 334444444433 2 35678999999999999999998875 479999999999999999999874 445789999
Q ss_pred ccccccc-cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 459 NWYNNLQ-NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 459 D~~~~l~-~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
|+.+... ...++||+|++|||+....... ..|...+......+ .....++..+.++|+|||++++.+.
T Consensus 303 D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~-------~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 303 DGRYPSQWCGEQQFDRILLDAPCSATGVIR-------RHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CTTCTHHHHTTCCEEEEEEECCCCCGGGTT-------TCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred chhhchhhcccCCCCEEEEeCCCCcccccC-------CCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9976432 2236899999999987543221 22222111111111 2346899999999999999988653
Q ss_pred C----CCHHHHHHHHHHC-CCee----------EEEEecCCCCceEEEEEe
Q psy2395 534 Y----NQSNLVRKLLFKY-GFSD----------IKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 534 ~----~~~~~l~~ll~~~-Gf~~----------i~~~~D~~g~~R~~~~~~ 569 (570)
. .+...+..++.++ +|.. ++++++..+.+-|+++++
T Consensus 376 s~~~~ene~~v~~~l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 426 (429)
T 1sqg_A 376 SVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKL 426 (429)
T ss_dssp CCCGGGTHHHHHHHHHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEE
T ss_pred CCChhhHHHHHHHHHHhCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEE
Confidence 2 3456677778776 4654 457778888889998875
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=138.27 Aligned_cols=122 Identities=15% Similarity=0.217 Sum_probs=97.4
Q ss_pred cchhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC-CCEEEE
Q psy2395 379 PRPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN-IPIKFI 456 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~-~~v~~~ 456 (570)
+.|.+..++..+..... .++.+|||+|||+|..++.+++..+++++|+++|+|+.+++.|++|+..++ .. .+++++
T Consensus 37 i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~~i~~~ 114 (221)
T 3dr5_A 37 PDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--YSPSRVRFL 114 (221)
T ss_dssp CCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEE
T ss_pred CCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCcCcEEEE
Confidence 45667777777766432 224499999999999999999877657899999999999999999998753 33 469999
Q ss_pred EcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 457 KSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 457 ~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
++|+.+.++.. .++||+|+++++.. .+..+++.+.++|+|||++++
T Consensus 115 ~gda~~~l~~~~~~~fD~V~~d~~~~----------------------------~~~~~l~~~~~~LkpGG~lv~ 161 (221)
T 3dr5_A 115 LSRPLDVMSRLANDSYQLVFGQVSPM----------------------------DLKALVDAAWPLLRRGGALVL 161 (221)
T ss_dssp CSCHHHHGGGSCTTCEEEEEECCCTT----------------------------THHHHHHHHHHHEEEEEEEEE
T ss_pred EcCHHHHHHHhcCCCcCeEEEcCcHH----------------------------HHHHHHHHHHHHcCCCcEEEE
Confidence 99998766544 57899999976421 346788889999999999987
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-14 Score=139.30 Aligned_cols=136 Identities=10% Similarity=0.161 Sum_probs=100.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~ 473 (570)
.++.+|||+|||+|.+++.+|+..+ +..|+|+|+|+.+++.|++|+..++ -.++.++++|+.+.++ ..+++||.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~---l~nv~~~~~Da~~~l~~~~~~~~~d~ 108 (218)
T 3dxy_A 33 REAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEG---LSNLRVMCHDAVEVLHKMIPDNSLRM 108 (218)
T ss_dssp SCCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTT---CSSEEEECSCHHHHHHHHSCTTCEEE
T ss_pred CCCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhC---CCcEEEEECCHHHHHHHHcCCCChhe
Confidence 3567999999999999999999876 5899999999999999999998742 2359999999977533 23579999
Q ss_pred EEEC--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-HHHHHHHHHHC-CC
Q psy2395 474 IVAN--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-SNLVRKLLFKY-GF 549 (570)
Q Consensus 474 Iv~N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~l~~ll~~~-Gf 549 (570)
|++| +||...... .. .+ ....+++.+.++|+|||++++.+.... .+.+.+.+... +|
T Consensus 109 v~~~~~~p~~~~~~~---------~r--r~--------~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~~~~~~ 169 (218)
T 3dxy_A 109 VQLFFPDPWHKARHN---------KR--RI--------VQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGY 169 (218)
T ss_dssp EEEESCCCCCSGGGG---------GG--SS--------CSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTSTTE
T ss_pred EEEeCCCCccchhhh---------hh--hh--------hhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 9998 555432110 00 00 114688999999999999999886543 45566666654 56
Q ss_pred eeEEE
Q psy2395 550 SDIKS 554 (570)
Q Consensus 550 ~~i~~ 554 (570)
..+..
T Consensus 170 ~~~~~ 174 (218)
T 3dxy_A 170 KNLSE 174 (218)
T ss_dssp EECCT
T ss_pred ccccC
Confidence 65433
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=144.32 Aligned_cols=131 Identities=17% Similarity=0.223 Sum_probs=105.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv 475 (570)
++.+|||+| |+|.+++.+++.++ ..+|+|+|+|+.+++.|++|+..++ .. +++++++|+.+.++. ..++||+|+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g--~~-~v~~~~~D~~~~l~~~~~~~fD~Vi 246 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIG--YE-DIEIFTFDLRKPLPDYALHKFDTFI 246 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHT--CC-CEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC--CC-CEEEEEChhhhhchhhccCCccEEE
Confidence 568999999 99999999998764 4799999999999999999998763 22 799999999875542 346899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCe-EEEEEEcC--CCH---HHHHHHHH-HCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG-LLLIEHGY--NQS---NLVRKLLF-KYG 548 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG-~l~~~~~~--~~~---~~l~~ll~-~~G 548 (570)
+||||... ....+++.+.+.|+||| .+++.+.. ... ..+.+.+. ..|
T Consensus 247 ~~~p~~~~--------------------------~~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 300 (373)
T 2qm3_A 247 TDPPETLE--------------------------AIRAFVGRGIATLKGPRCAGYFGITRRESSLDKWREIQKLLLNEFN 300 (373)
T ss_dssp ECCCSSHH--------------------------HHHHHHHHHHHTBCSTTCEEEEEECTTTCCHHHHHHHHHHHHHTSC
T ss_pred ECCCCchH--------------------------HHHHHHHHHHHHcccCCeEEEEEEecCcCCHHHHHHHHHHHHHhcC
Confidence 99998621 13788999999999999 45777765 555 67778887 889
Q ss_pred CeeEEEEecC
Q psy2395 549 FSDIKSWRDL 558 (570)
Q Consensus 549 f~~i~~~~D~ 558 (570)
|....+++++
T Consensus 301 ~~~~~~~~~~ 310 (373)
T 2qm3_A 301 VVITDIIRNF 310 (373)
T ss_dssp CEEEEEEEEE
T ss_pred cchhhhhhhh
Confidence 9877766653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=135.02 Aligned_cols=131 Identities=14% Similarity=0.122 Sum_probs=104.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++... +.++.++++|+.+. +. .++||+|++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~---~~~~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~-~~-~~~fD~v~~ 107 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNL-NI-NRKFDLITC 107 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGC-CC-SCCEEEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHHCC---CcEEEEECCHHHHHHHHHHHhhc----CCCeEEEecccccC-Cc-cCCceEEEE
Confidence 67899999999999999998763 68999999999999999998763 33789999999663 32 278999999
Q ss_pred CC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 477 NP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 477 NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
+. .+.... .......+++.+.++|+|||++++.++.
T Consensus 108 ~~~~l~~~~----------------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (246)
T 1y8c_A 108 CLDSTNYII----------------------DSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVF 165 (246)
T ss_dssp CTTGGGGCC----------------------SHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEE
T ss_pred cCccccccC----------------------CHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEE
Confidence 76 432110 1134578999999999999999874321
Q ss_pred -------------------------------------CCHHHHHHHHHHCCCeeEEEEecC
Q psy2395 535 -------------------------------------NQSNLVRKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 535 -------------------------------------~~~~~l~~ll~~~Gf~~i~~~~D~ 558 (570)
...+++.++|+++||+.++++.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~ 226 (246)
T 1y8c_A 166 YYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCY 226 (246)
T ss_dssp EEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESS
T ss_pred EEEecccCCceEEEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEccc
Confidence 257889999999999999998775
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.3e-15 Score=155.70 Aligned_cols=160 Identities=17% Similarity=0.203 Sum_probs=113.4
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
..+++|+...+.+++.+. ..++.+|||+|||+|.+++.+++......+|+|+|+++.+++.| .++
T Consensus 19 g~~~TP~~l~~~~~~~~~---~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~ 83 (421)
T 2ih2_A 19 GRVETPPEVVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWA 83 (421)
T ss_dssp --CCCCHHHHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTE
T ss_pred ceEeCCHHHHHHHHHhhc---cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCC
Confidence 346778777777666542 13466999999999999999998752357999999999999877 248
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCccc----CCCCc--cccccccccccCCChHHHHHHHHHHhhccccCeE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHL----NKGDL--RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGL 527 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~----~~~~~--~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~ 527 (570)
+++++|+.+... .++||+|++||||........ ..... .+++..+... ...+.+..+++.+.++|+|||.
T Consensus 84 ~~~~~D~~~~~~--~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~fl~~~~~~Lk~~G~ 159 (421)
T 2ih2_A 84 EGILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWK--GKYNLYGAFLEKAVRLLKPGGV 159 (421)
T ss_dssp EEEESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCC--TTCCHHHHHHHHHHHHEEEEEE
T ss_pred cEEeCChhhcCc--cCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhccc--CCccHHHHHHHHHHHHhCCCCE
Confidence 899999976433 368999999999987553211 00111 1222112222 1245678999999999999999
Q ss_pred EEEEEcCC-----CHHHHHHHHHHCCCeeE
Q psy2395 528 LLIEHGYN-----QSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 528 l~~~~~~~-----~~~~l~~ll~~~Gf~~i 552 (570)
++++++.. ....+++++.+.|+..+
T Consensus 160 ~~~i~p~~~l~~~~~~~lr~~l~~~~~~~i 189 (421)
T 2ih2_A 160 LVFVVPATWLVLEDFALLREFLAREGKTSV 189 (421)
T ss_dssp EEEEEEGGGGTCGGGHHHHHHHHHHSEEEE
T ss_pred EEEEEChHHhcCccHHHHHHHHHhcCCeEE
Confidence 99988764 56788999888887433
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=133.34 Aligned_cols=117 Identities=21% Similarity=0.356 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
.+.+.+.+.... +++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++..+ +.+++++++|+.+
T Consensus 25 ~~~~~~~l~~~~-~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~ 96 (227)
T 1ve3_A 25 IETLEPLLMKYM-KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARK 96 (227)
T ss_dssp HHHHHHHHHHSC-CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTS
T ss_pred HHHHHHHHHHhc-CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhc
Confidence 345555555543 347899999999999999999875 38999999999999999998863 4579999999966
Q ss_pred ccccCCCceeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 463 NLQNYKKLFNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++...++||+|+++++ +.. ......+++.+.+.|+|||.+++..+
T Consensus 97 -~~~~~~~~D~v~~~~~~~~~~-------------------------~~~~~~~l~~~~~~L~~gG~l~~~~~ 143 (227)
T 1ve3_A 97 -LSFEDKTFDYVIFIDSIVHFE-------------------------PLELNQVFKEVRRVLKPSGKFIMYFT 143 (227)
T ss_dssp -CCSCTTCEEEEEEESCGGGCC-------------------------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred -CCCCCCcEEEEEEcCchHhCC-------------------------HHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 3333468999999987 432 12347889999999999999987543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=140.89 Aligned_cols=182 Identities=10% Similarity=0.078 Sum_probs=122.5
Q ss_pred ccCeeeeecCCccccch----hHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPRP----ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr~----~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
+++..+.++........ ..+.+....+.. .+++.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|++
T Consensus 60 ~~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~-~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~ 137 (304)
T 3bwc_A 60 PWGTVMALDGCIQVTDYDEFVYHEVLGHTSLCS-HPKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQ 137 (304)
T ss_dssp SCCEEEEETTEEEEETTTHHHHHHHHHHHHHTT-SSSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHH
T ss_pred ccceEEEECCeeeeecccchHHHHHHhhhhhhc-CCCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHH
Confidence 45666666654333222 233444332221 24568999999999999999997643 5799999999999999999
Q ss_pred HHHhh-cccCCCCEEEEEccccccccc-CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 441 NAKKK-LTKYNIPIKFIKSNWYNNLQN-YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 441 n~~~~-~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
++... ......+++++.+|+.+.... ..++||+|++|+++...+ ...+ +-..+++.+
T Consensus 138 ~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi~d~~~~~~~-------------~~~l--------~~~~~l~~~ 196 (304)
T 3bwc_A 138 HFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVIIDTTDPAGP-------------ASKL--------FGEAFYKDV 196 (304)
T ss_dssp HCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEEEECC------------------------------CCHHHHHHH
T ss_pred HhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEEECCCCcccc-------------chhh--------hHHHHHHHH
Confidence 87431 111245799999999775432 347899999998753111 0011 015788899
Q ss_pred hhccccCeEEEEEEcCC-----CHHHHHHHHHHCCCeeEEEEec----C-CCCceEEEEEe
Q psy2395 519 SKYLVKNGLLLIEHGYN-----QSNLVRKLLFKYGFSDIKSWRD----L-SGIERVTQGKI 569 (570)
Q Consensus 519 ~~~LkpgG~l~~~~~~~-----~~~~l~~ll~~~Gf~~i~~~~D----~-~g~~R~~~~~~ 569 (570)
.+.|+|||++++..+.. ....+.+.+++.||..+..+.. + .|...+++|..
T Consensus 197 ~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 197 LRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred HHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 99999999999876542 3456778888899998877643 2 46666777653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.2e-14 Score=138.41 Aligned_cols=128 Identities=18% Similarity=0.241 Sum_probs=104.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++...+..+|+|+|+|+.+++.|++|+..++ ...+++++++|+.+.++ .++||+|+
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~~D~v~ 167 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAG--FDDRVTIKLKDIYEGIE--EENVDHVI 167 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHT--CTTTEEEECSCGGGCCC--CCSEEEEE
T ss_pred CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcC--CCCceEEEECchhhccC--CCCcCEEE
Confidence 567899999999999999999883236899999999999999999998753 23359999999986544 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCC--CeeE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYG--FSDI 552 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~G--f~~i 552 (570)
+|+|.. ..+++.+.+.|+|||.+++..+. .+...+.+.+.+.| |..+
T Consensus 168 ~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g~~f~~~ 217 (255)
T 3mb5_A 168 LDLPQP------------------------------ERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFKDYFMKP 217 (255)
T ss_dssp ECSSCG------------------------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTGGGBSCC
T ss_pred ECCCCH------------------------------HHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcccc
Confidence 998732 34577888899999999987754 56778889999999 9887
Q ss_pred EEEec
Q psy2395 553 KSWRD 557 (570)
Q Consensus 553 ~~~~D 557 (570)
+++.-
T Consensus 218 ~~~e~ 222 (255)
T 3mb5_A 218 RTINV 222 (255)
T ss_dssp EEECC
T ss_pred EEEEE
Confidence 76643
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=8.9e-14 Score=130.56 Aligned_cols=138 Identities=17% Similarity=0.177 Sum_probs=105.3
Q ss_pred cchhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy2395 379 PRPETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK 457 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~ 457 (570)
|++....+...++... ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++|+..++ ...++.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~--~~~~~~~~~ 88 (192)
T 1l3i_A 14 PGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLME 88 (192)
T ss_dssp CCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEEE
T ss_pred CCCChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcC--CCcceEEEe
Confidence 4333344444444432 3567899999999999999999765 699999999999999999998642 224699999
Q ss_pred cccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-CCC
Q psy2395 458 SNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQ 536 (570)
Q Consensus 458 ~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~ 536 (570)
+|+.+.++. .++||+|++++++. .+..+++.+.++|+|||.+++... ...
T Consensus 89 ~d~~~~~~~-~~~~D~v~~~~~~~----------------------------~~~~~l~~~~~~l~~gG~l~~~~~~~~~ 139 (192)
T 1l3i_A 89 GDAPEALCK-IPDIDIAVVGGSGG----------------------------ELQEILRIIKDKLKPGGRIIVTAILLET 139 (192)
T ss_dssp SCHHHHHTT-SCCEEEEEESCCTT----------------------------CHHHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred cCHHHhccc-CCCCCEEEECCchH----------------------------HHHHHHHHHHHhcCCCcEEEEEecCcch
Confidence 998764432 15899999987642 236788999999999999988664 345
Q ss_pred HHHHHHHHHHCCCe
Q psy2395 537 SNLVRKLLFKYGFS 550 (570)
Q Consensus 537 ~~~l~~ll~~~Gf~ 550 (570)
...+.+++.+.||.
T Consensus 140 ~~~~~~~l~~~g~~ 153 (192)
T 1l3i_A 140 KFEAMECLRDLGFD 153 (192)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCCc
Confidence 67788899999994
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-13 Score=134.53 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=109.8
Q ss_pred hHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 382 ETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 382 ~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
....+.+.++..+. .++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ ...++.++++|+
T Consensus 45 ~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~ 120 (273)
T 3bus_A 45 ATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAG--LANRVTFSYADA 120 (273)
T ss_dssp HHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCT
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEECcc
Confidence 34455566655543 467899999999999999999875 4799999999999999999988642 234699999999
Q ss_pred ccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------
Q psy2395 461 YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------ 534 (570)
Q Consensus 461 ~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------ 534 (570)
.+ ++..+++||+|+++..+...+ ....+++.+.++|+|||++++....
T Consensus 121 ~~-~~~~~~~fD~v~~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~ 174 (273)
T 3bus_A 121 MD-LPFEDASFDAVWALESLHHMP-------------------------DRGRALREMARVLRPGGTVAIADFVLLAPVE 174 (273)
T ss_dssp TS-CCSCTTCEEEEEEESCTTTSS-------------------------CHHHHHHHHHTTEEEEEEEEEEEEEESSCCC
T ss_pred cc-CCCCCCCccEEEEechhhhCC-------------------------CHHHHHHHHHHHcCCCeEEEEEEeeccCCCC
Confidence 65 444457899999976544221 1368899999999999999874311
Q ss_pred -------------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 -------------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 -------------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+.+++.++||..+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 215 (273)
T 3bus_A 175 GAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVD 215 (273)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred hhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEE
Confidence 1236678889999999876543
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=138.44 Aligned_cols=130 Identities=18% Similarity=0.159 Sum_probs=101.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...+ ...+++++++|+.+..+ .++||+|++
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~--~~~fD~v~~ 138 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSP--KAEYFSFVKEDVFTWRP--TELFDLIFD 138 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSG--GGGGEEEECCCTTTCCC--SSCEEEEEE
T ss_pred CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccC--CCcceEEEECchhcCCC--CCCeeEEEE
Confidence 4459999999999999999753 5799999999999999999987521 23469999999977443 368999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-----------CCHHHHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-----------NQSNLVRKLLF 545 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-----------~~~~~l~~ll~ 545 (570)
+..+...+ .+....+++.+.+.|+|||.+++.... ...+.+.+++.
T Consensus 139 ~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 195 (235)
T 3lcc_A 139 YVFFCAIE-----------------------PEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLV 195 (235)
T ss_dssp ESSTTTSC-----------------------GGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHG
T ss_pred ChhhhcCC-----------------------HHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHH
Confidence 76543221 123478899999999999999875421 23678999999
Q ss_pred HCCCeeEEEEe
Q psy2395 546 KYGFSDIKSWR 556 (570)
Q Consensus 546 ~~Gf~~i~~~~ 556 (570)
++||..+.+..
T Consensus 196 ~~Gf~~~~~~~ 206 (235)
T 3lcc_A 196 PIGFKAVSVEE 206 (235)
T ss_dssp GGTEEEEEEEE
T ss_pred HcCCeEEEEEe
Confidence 99999987764
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.5e-14 Score=141.45 Aligned_cols=147 Identities=19% Similarity=0.155 Sum_probs=101.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---CCCce
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN---YKKLF 471 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~f 471 (570)
..++.+|||+|||+|..+..++...+...+|+|+|+|+.+++.+++|+..++. .++.++++|+.+.... ..++|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~~~~~~f 157 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---LNTIIINADMRKYKDYLLKNEIFF 157 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCHHHHHHHHHHTTCCE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---CcEEEEeCChHhcchhhhhccccC
Confidence 35678999999999999999998765347999999999999999999987531 2699999999664321 14689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHHHHHC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKLLFKY 547 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ll~~~ 547 (570)
|+|++||||........ .|................+++.+.++|+|||++++.+.. .+...+..++.++
T Consensus 158 D~Vl~d~Pcs~~g~~~~-------~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~ 230 (274)
T 3ajd_A 158 DKILLDAPCSGNIIKDK-------NRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKR 230 (274)
T ss_dssp EEEEEEECCC-------------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHC
T ss_pred CEEEEcCCCCCCccccc-------CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhC
Confidence 99999999875432211 111111011111234578999999999999999886532 4455666777654
Q ss_pred -CCee
Q psy2395 548 -GFSD 551 (570)
Q Consensus 548 -Gf~~ 551 (570)
+|..
T Consensus 231 ~~~~~ 235 (274)
T 3ajd_A 231 NDVEL 235 (274)
T ss_dssp SSEEE
T ss_pred CCcEE
Confidence 4544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=136.47 Aligned_cols=133 Identities=8% Similarity=0.008 Sum_probs=95.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---------cCCCCEEEEEcccccccc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---------KYNIPIKFIKSNWYNNLQ 465 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---------~~~~~v~~~~~D~~~~l~ 465 (570)
..++.+|||+|||+|..+..|++.+ .+|+|+|+|+.|++.|+++...... ....+++++++|+.+. +
T Consensus 20 ~~~~~~vLD~GCG~G~~~~~la~~g---~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l-~ 95 (203)
T 1pjz_A 20 VVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL-T 95 (203)
T ss_dssp CCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS-T
T ss_pred cCCCCEEEEeCCCCcHhHHHHHHCC---CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC-C
Confidence 3567899999999999999999864 6999999999999999987642000 0134699999999763 3
Q ss_pred cCC-CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcC---------
Q psy2395 466 NYK-KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGY--------- 534 (570)
Q Consensus 466 ~~~-~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~--------- 534 (570)
..+ ++||+|+++..++..+ .+....+++++.++|||||++++. +..
T Consensus 96 ~~~~~~fD~v~~~~~l~~l~-----------------------~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~ 152 (203)
T 1pjz_A 96 ARDIGHCAAFYDRAAMIALP-----------------------ADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPP 152 (203)
T ss_dssp HHHHHSEEEEEEESCGGGSC-----------------------HHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCC
T ss_pred cccCCCEEEEEECcchhhCC-----------------------HHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCC
Confidence 222 5899999965433110 123457899999999999985443 222
Q ss_pred --CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 --NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 --~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+++.+++.. ||..+.+.
T Consensus 153 ~~~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 153 FSVPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp CCCCHHHHHHTSCS-SEEEEEEE
T ss_pred CCCCHHHHHHHhcC-CcEEEEec
Confidence 135778888877 99876544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-13 Score=136.68 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=106.6
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
...+..+...+++.+. ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++..++ ..++.+
T Consensus 19 ~~~~~~~~~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~---~~~v~~ 89 (260)
T 1vl5_A 19 IHAKGSDLAKLMQIAA---LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNG---HQQVEY 89 (260)
T ss_dssp ----CCCHHHHHHHHT---CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTT---CCSEEE
T ss_pred cccCHHHHHHHHHHhC---CCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcC---CCceEE
Confidence 3345555666666552 3467899999999999999999775 489999999999999999987642 136999
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--c
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--G 533 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~ 533 (570)
+++|+.+ ++..+++||+|+++-.+... .....++.++.++|+|||++++.. .
T Consensus 90 ~~~d~~~-l~~~~~~fD~V~~~~~l~~~-------------------------~d~~~~l~~~~r~LkpgG~l~~~~~~~ 143 (260)
T 1vl5_A 90 VQGDAEQ-MPFTDERFHIVTCRIAAHHF-------------------------PNPASFVSEAYRVLKKGGQLLLVDNSA 143 (260)
T ss_dssp EECCC-C-CCSCTTCEEEEEEESCGGGC-------------------------SCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred EEecHHh-CCCCCCCEEEEEEhhhhHhc-------------------------CCHHHHHHHHHHHcCCCCEEEEEEcCC
Confidence 9999965 44445799999997433211 123688999999999999998842 1
Q ss_pred C-----------------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 534 Y-----------------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 534 ~-----------------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
. .....+.++|.++||..+.+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 189 (260)
T 1vl5_A 144 PENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHC 189 (260)
T ss_dssp CSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence 1 2246778899999999876554
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=140.02 Aligned_cols=130 Identities=12% Similarity=0.188 Sum_probs=102.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++...+.+.+|+|+|+|+.+++.|++++.. .+.+++++++|+.+ ++. .++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~v~~~~~d~~~-~~~-~~~fD~v~ 94 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL----LPYDSEFLEGDATE-IEL-NDKYDIAI 94 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS----SSSEEEEEESCTTT-CCC-SSCEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh----cCCceEEEEcchhh-cCc-CCCeeEEE
Confidence 4678999999999999999998876458999999999999999999875 34479999999976 333 46899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++..+... .....+++.+.+.|+|||++++..+.
T Consensus 95 ~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (284)
T 3gu3_A 95 CHAFLLHM-------------------------TTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQL 149 (284)
T ss_dssp EESCGGGC-------------------------SSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCH
T ss_pred ECChhhcC-------------------------CCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccch
Confidence 97543211 12368899999999999999876544
Q ss_pred ------------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 ------------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 ------------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+.++|+++||..+.+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~~ 189 (284)
T 3gu3_A 150 GVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECRV 189 (284)
T ss_dssp HHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEEEE
Confidence 0123467889999999987643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-13 Score=144.81 Aligned_cols=165 Identities=16% Similarity=0.175 Sum_probs=115.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-CceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK-KLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~-~~fD~ 473 (570)
..++.+|||+|||+|..+..++...+...+|+|+|+|+.+++.+++|+..++. .++.++++|+.+...... ++||+
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---~~v~~~~~D~~~~~~~~~~~~fD~ 333 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---KIVKPLVKDARKAPEIIGEEVADK 333 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---CSEEEECSCTTCCSSSSCSSCEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---CcEEEEEcChhhcchhhccCCCCE
Confidence 35678999999999999999998765347999999999999999999987531 269999999976432222 67999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCCh----HHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHHHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL----SSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKLLF 545 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl----~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ll~ 545 (570)
|++|||+...... +..|...+....... .....++..+.++|+|||++++.+.. .+...+..++.
T Consensus 334 Vl~D~Pcsg~g~~-------~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~ 406 (450)
T 2yxl_A 334 VLLDAPCTSSGTI-------GKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLN 406 (450)
T ss_dssp EEEECCCCCGGGT-------TTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred EEEcCCCCCCeee-------ccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHH
Confidence 9999998654322 122222221112222 12367899999999999999886533 24456677788
Q ss_pred HC-CCeeE---------------EEEecCCCCceEEEEEe
Q psy2395 546 KY-GFSDI---------------KSWRDLSGIERVTQGKI 569 (570)
Q Consensus 546 ~~-Gf~~i---------------~~~~D~~g~~R~~~~~~ 569 (570)
++ +|..+ ++++...+.+-|+++++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l 446 (450)
T 2yxl_A 407 VHPEFKLVPLKSPYDPGFLEGTMRAWPHRHSTIGFFYALL 446 (450)
T ss_dssp HCSSCEECCCCSSSEECSSTTCEEECHHHHSSCCEEEEEE
T ss_pred hCCCCEEeecccccccccCCCeEEECCCCCCCCceEEEEE
Confidence 76 67653 34444456666776654
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=135.66 Aligned_cols=135 Identities=16% Similarity=0.149 Sum_probs=102.4
Q ss_pred hHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 382 ~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
....+++.+... .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++.. . +++++++|+.
T Consensus 29 ~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~-----~--~v~~~~~d~~ 96 (250)
T 2p7i_A 29 MHPFMVRAFTPF--FRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK-----D--GITYIHSRFE 96 (250)
T ss_dssp HHHHHHHHHGGG--CCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC-----S--CEEEEESCGG
T ss_pred HHHHHHHHHHhh--cCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhh-----C--CeEEEEccHH
Confidence 334445554332 256789999999999999998765 479999999999999998864 1 6999999997
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh-hccccCeEEEEEEcCC-----
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS-KYLVKNGLLLIEHGYN----- 535 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~-~~LkpgG~l~~~~~~~----- 535 (570)
+.. .+++||+|+++-..... .....+++++. ++|+|||++++..+..
T Consensus 97 ~~~--~~~~fD~v~~~~~l~~~-------------------------~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~ 149 (250)
T 2p7i_A 97 DAQ--LPRRYDNIVLTHVLEHI-------------------------DDPVALLKRINDDWLAEGGRLFLVCPNANAVSR 149 (250)
T ss_dssp GCC--CSSCEEEEEEESCGGGC-------------------------SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHH
T ss_pred HcC--cCCcccEEEEhhHHHhh-------------------------cCHHHHHHHHHHHhcCCCCEEEEEcCChHHHHH
Confidence 652 35789999995322111 12368899999 9999999999876321
Q ss_pred ----------------------------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ----------------------------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ----------------------------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
..+.+.+++.++||..+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 150 QIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp HHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 34678999999999988765
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-13 Score=136.83 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=112.1
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
...+.+.+.... +++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++. ++.++++|+.+
T Consensus 37 ~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~d~~~ 104 (263)
T 3pfg_A 37 AADLAALVRRHS-PKAASLLDVACGTGMHLRHLADSF---GTVEGLELSADMLAIARRRNP--------DAVLHHGDMRD 104 (263)
T ss_dssp HHHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHTTTS---SEEEEEESCHHHHHHHHHHCT--------TSEEEECCTTT
T ss_pred HHHHHHHHHhhC-CCCCcEEEeCCcCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC--------CCEEEECChHH
Confidence 344555554433 456899999999999999998664 589999999999999998753 48899999976
Q ss_pred ccccCCCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---------
Q psy2395 463 NLQNYKKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--------- 532 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--------- 532 (570)
. +. +++||+|+++. .+.... ..+....+++.+.++|+|||.+++..
T Consensus 105 ~-~~-~~~fD~v~~~~~~l~~~~----------------------~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 160 (263)
T 3pfg_A 105 F-SL-GRRFSAVTCMFSSIGHLA----------------------GQAELDAALERFAAHVLPDGVVVVEPWWFPENFTP 160 (263)
T ss_dssp C-CC-SCCEEEEEECTTGGGGSC----------------------HHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCT
T ss_pred C-Cc-cCCcCEEEEcCchhhhcC----------------------CHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccc
Confidence 3 32 57899999975 332110 11345788999999999999998841
Q ss_pred ----------------------------------------------------cCCCHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 533 ----------------------------------------------------GYNQSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 533 ----------------------------------------------------~~~~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
.....+++.++|+++||+++.+..+..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~- 239 (263)
T 3pfg_A 161 GYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPS- 239 (263)
T ss_dssp TEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTT-
T ss_pred cccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCC-
Confidence 011368899999999999998876654
Q ss_pred CceEEEEEe
Q psy2395 561 IERVTQGKI 569 (570)
Q Consensus 561 ~~R~~~~~~ 569 (570)
...+++|++
T Consensus 240 ~~~~~va~K 248 (263)
T 3pfg_A 240 GRGLFTGLP 248 (263)
T ss_dssp SSCEEEEEE
T ss_pred CceeEEEec
Confidence 455677765
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=133.17 Aligned_cols=129 Identities=14% Similarity=0.069 Sum_probs=101.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD 472 (570)
.+++.+|||+|||+|.++..+|+...+..+|+|+|+++.|++.+++++.. ..++..+.+|...+. +...+.+|
T Consensus 75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----~~ni~~V~~d~~~p~~~~~~~~~vD 149 (233)
T 4df3_A 75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----RRNIFPILGDARFPEKYRHLVEGVD 149 (233)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----CTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----hcCeeEEEEeccCccccccccceEE
Confidence 46899999999999999999998865578999999999999999998864 346889999986543 23347899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC----------HHHHHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ----------SNLVRK 542 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~l~~ 542 (570)
+|+++.++.. ....++.++.+.|||||.+++.+.... .....+
T Consensus 150 vVf~d~~~~~---------------------------~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~ 202 (233)
T 4df3_A 150 GLYADVAQPE---------------------------QAAIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIK 202 (233)
T ss_dssp EEEECCCCTT---------------------------HHHHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHH
T ss_pred EEEEeccCCh---------------------------hHHHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHH
Confidence 9999876541 236788999999999999988653321 234566
Q ss_pred HHHHCCCeeEEEE
Q psy2395 543 LLFKYGFSDIKSW 555 (570)
Q Consensus 543 ll~~~Gf~~i~~~ 555 (570)
.|.+.||..++..
T Consensus 203 ~L~~~GF~l~e~i 215 (233)
T 4df3_A 203 TLMDGGLEIKDVV 215 (233)
T ss_dssp HHHHTTCCEEEEE
T ss_pred HHHHCCCEEEEEE
Confidence 7888999988765
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=135.96 Aligned_cols=141 Identities=17% Similarity=0.221 Sum_probs=107.9
Q ss_pred HHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
.++..++..+ ..++.+|||+|||+|.++..++..+ +.+|+|+|+|+.+++.|++++.. . .+++++++|+.+.
T Consensus 42 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~----~-~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 42 EATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSG----N-NKIIFEANDILTK 114 (266)
T ss_dssp HHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCS----C-TTEEEEECCTTTC
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhc----C-CCeEEEECccccC
Confidence 3344554443 2467799999999999999999876 47999999999999999988763 2 5799999999663
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc----------
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG---------- 533 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~---------- 533 (570)
+..+++||+|+++..+... +......+++.+.++|+|||++++...
T Consensus 115 -~~~~~~fD~v~~~~~l~~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 170 (266)
T 3ujc_A 115 -EFPENNFDLIYSRDAILAL-----------------------SLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD 170 (266)
T ss_dssp -CCCTTCEEEEEEESCGGGS-----------------------CHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCH
T ss_pred -CCCCCcEEEEeHHHHHHhc-----------------------ChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchH
Confidence 4445799999997543211 113567899999999999999988541
Q ss_pred ------------CCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 534 ------------YNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 534 ------------~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
....+.+.+++.++||..+.+..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 171 EFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp HHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 12357889999999999887653
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-13 Score=135.83 Aligned_cols=146 Identities=14% Similarity=0.107 Sum_probs=108.6
Q ss_pred HHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 386 LVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 386 l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.++.++..+ ..++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.|++++..++ ...+++++++|+.+.
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~- 134 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWEEF- 134 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSC--CSSCEEEEECCGGGC-
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECCHHHc-
Confidence 344444443 35678999999999999999998863 799999999999999999998642 334699999999653
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------- 534 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------- 534 (570)
+++||+|+++..+...++.. ...|...+..+++.+.++|+|||++++....
T Consensus 135 ---~~~fD~v~~~~~~~~~~d~~----------------~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~ 195 (302)
T 3hem_A 135 ---DEPVDRIVSLGAFEHFADGA----------------GDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQEL 195 (302)
T ss_dssp ---CCCCSEEEEESCGGGTTCCS----------------SCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHH
T ss_pred ---CCCccEEEEcchHHhcCccc----------------cccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhc
Confidence 47899999976543221100 0013456789999999999999999884321
Q ss_pred -------------------------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 -------------------------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 -------------------------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
.....+.+++.++||..+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~~~~~l~~aGf~~~~~~ 241 (302)
T 3hem_A 196 GLTSPMSLLRFIKFILTEIFPGGRLPRISQVDYYSSNAGWKVERYH 241 (302)
T ss_dssp TCCCCHHHHHHHHHHHHHTCTTCCCCCHHHHHHHHHHHTCEEEEEE
T ss_pred cccccccccchHHHHHHhcCCCCCCCCHHHHHHHHHhCCcEEEEEE
Confidence 124567888999999987764
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=128.17 Aligned_cols=130 Identities=15% Similarity=0.197 Sum_probs=103.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++.. ++.++++|+.+. +...++||+|
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~--------~~~~~~~d~~~~-~~~~~~~D~i 111 (195)
T 3cgg_A 44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP--------EARWVVGDLSVD-QISETDFDLI 111 (195)
T ss_dssp SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT--------TSEEEECCTTTS-CCCCCCEEEE
T ss_pred ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC--------CCcEEEcccccC-CCCCCceeEE
Confidence 356789999999999999999976 3699999999999999998763 378999999663 3334789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC---CHHHHHHHHHHCCCee
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN---QSNLVRKLLFKYGFSD 551 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~---~~~~l~~ll~~~Gf~~ 551 (570)
+++|+....- ..+....++..+.+.|+|||.+++..+.. ....+.+++.++||..
T Consensus 112 ~~~~~~~~~~----------------------~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~ 169 (195)
T 3cgg_A 112 VSAGNVMGFL----------------------AEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLEL 169 (195)
T ss_dssp EECCCCGGGS----------------------CHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEE
T ss_pred EECCcHHhhc----------------------ChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEE
Confidence 9986543110 01234788999999999999999977654 4788999999999999
Q ss_pred EEEEecC
Q psy2395 552 IKSWRDL 558 (570)
Q Consensus 552 i~~~~D~ 558 (570)
+.+..+.
T Consensus 170 ~~~~~~~ 176 (195)
T 3cgg_A 170 ENAFESW 176 (195)
T ss_dssp EEEESST
T ss_pred eeeeccc
Confidence 8887664
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=134.23 Aligned_cols=142 Identities=15% Similarity=0.098 Sum_probs=103.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc--cccCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN--LQNYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~--l~~~~~~fD~ 473 (570)
.++.+|||+|||+|.++..+++...+..+|+|+|+|+.+++.+.+++..+ .+++++++|+.+. ++...++||+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~~~D~ 150 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIAMVDV 150 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCCCEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCCcEEE
Confidence 46789999999999999999987533579999999999999999888752 4699999999763 2333478999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC----------HHHHHHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ----------SNLVRKL 543 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------~~~l~~l 543 (570)
|++|+|.. +....++..+.+.|+|||++++.+.... .....++
T Consensus 151 V~~~~~~~---------------------------~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 203 (233)
T 2ipx_A 151 IFADVAQP---------------------------DQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKK 203 (233)
T ss_dssp EEECCCCT---------------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHT
T ss_pred EEEcCCCc---------------------------cHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHH
Confidence 99998711 1235667889999999999999764311 1111477
Q ss_pred HHHCCCeeEEEEe-cCCCC-ceEEEEEe
Q psy2395 544 LFKYGFSDIKSWR-DLSGI-ERVTQGKI 569 (570)
Q Consensus 544 l~~~Gf~~i~~~~-D~~g~-~R~~~~~~ 569 (570)
|.++||..++... +.... .-++++++
T Consensus 204 l~~~Gf~~~~~~~~~~~~~~~~~v~~~~ 231 (233)
T 2ipx_A 204 MQQENMKPQEQLTLEPYERDHAVVVGVY 231 (233)
T ss_dssp TGGGTEEEEEEEECTTTSSSEEEEEEEE
T ss_pred HHHCCCceEEEEecCCccCCcEEEEEEe
Confidence 7889999887443 22222 34555554
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.7e-14 Score=137.97 Aligned_cols=132 Identities=11% Similarity=0.012 Sum_probs=95.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh----------hcc----cCCCCEEEEEcccc
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK----------KLT----KYNIPIKFIKSNWY 461 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~----------~~~----~~~~~v~~~~~D~~ 461 (570)
.++.+|||+|||+|..+..|++.+ .+|+|||+|+.|++.|+++... .+. ....+++|+++|++
T Consensus 67 ~~~~~vLD~GCG~G~~~~~La~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~ 143 (252)
T 2gb4_A 67 QSGLRVFFPLCGKAIEMKWFADRG---HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIF 143 (252)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTT
T ss_pred CCCCeEEEeCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccc
Confidence 367899999999999999999764 6999999999999999876531 000 01357999999997
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcC------
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGY------ 534 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~------ 534 (570)
+......++||+|+++..+...+ .+....+++.+.++|+|||++++. +..
T Consensus 144 ~l~~~~~~~FD~V~~~~~l~~l~-----------------------~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~ 200 (252)
T 2gb4_A 144 DLPRANIGKFDRIWDRGALVAIN-----------------------PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHA 200 (252)
T ss_dssp TGGGGCCCCEEEEEESSSTTTSC-----------------------GGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCC
T ss_pred cCCcccCCCEEEEEEhhhhhhCC-----------------------HHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCC
Confidence 74332127899999976543211 012367899999999999998653 221
Q ss_pred -----CCHHHHHHHHHHCCCeeEEE
Q psy2395 535 -----NQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 535 -----~~~~~l~~ll~~~Gf~~i~~ 554 (570)
...+++.+++.. +|.++..
T Consensus 201 g~~~~~~~~el~~~l~~-~f~v~~~ 224 (252)
T 2gb4_A 201 GPPFYVPSAELKRLFGT-KCSMQCL 224 (252)
T ss_dssp CSSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCCCCHHHHHHHhhC-CeEEEEE
Confidence 245778888876 5877544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-13 Score=125.83 Aligned_cols=130 Identities=19% Similarity=0.187 Sum_probs=100.9
Q ss_pred HHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 384 ELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 384 ~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
..+...++... ..++.+|||+|||+|.++..++. ...+|+|+|+|+.+++.|++|+..++. .+++++++|+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~d~~~ 94 (183)
T 2yxd_A 21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNI---KNCQIIKGRAED 94 (183)
T ss_dssp HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTC---CSEEEEESCHHH
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCC---CcEEEEECCccc
Confidence 44444444433 24677999999999999999997 258999999999999999999987421 369999999977
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-CCCHHHHH
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-YNQSNLVR 541 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~l~ 541 (570)
.++. ++||+|++++| . .+..+++.+.+. |||.+++... ......+.
T Consensus 95 ~~~~--~~~D~i~~~~~----~-------------------------~~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~ 141 (183)
T 2yxd_A 95 VLDK--LEFNKAFIGGT----K-------------------------NIEKIIEILDKK--KINHIVANTIVLENAAKII 141 (183)
T ss_dssp HGGG--CCCSEEEECSC----S-------------------------CHHHHHHHHHHT--TCCEEEEEESCHHHHHHHH
T ss_pred cccC--CCCcEEEECCc----c-------------------------cHHHHHHHHhhC--CCCEEEEEecccccHHHHH
Confidence 4443 68999999887 1 135777777777 9999998774 35567788
Q ss_pred HHHHHCCCeeE
Q psy2395 542 KLLFKYGFSDI 552 (570)
Q Consensus 542 ~ll~~~Gf~~i 552 (570)
+.++++||...
T Consensus 142 ~~l~~~g~~~~ 152 (183)
T 2yxd_A 142 NEFESRGYNVD 152 (183)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHcCCeEE
Confidence 99999998653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-14 Score=146.75 Aligned_cols=137 Identities=24% Similarity=0.395 Sum_probs=105.4
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
+..+...|++|.+. ..++.+++.+. ..++.+|||+|||+|.++..+++.++ ..+|+|+|+|+.+++.|++|+.
T Consensus 166 ~~~~~~~~gvf~~~~~d~~~~~ll~~l~---~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~ 241 (343)
T 2pjd_A 166 GLTVKTLPGVFSRDGLDVGSQLLLSTLT---PHTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLA 241 (343)
T ss_dssp TEEEEECTTCTTSSSCCHHHHHHHHHSC---TTCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHH
T ss_pred ceEEEecCCccCCCCCcHHHHHHHHhcC---cCCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH
Confidence 56677788888765 23555554431 23466999999999999999998875 4699999999999999999998
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.+ +..+.++.+|+.+.. .++||+|++||||+.... ........+++.+.++|+
T Consensus 242 ~~----~~~~~~~~~d~~~~~---~~~fD~Iv~~~~~~~g~~--------------------~~~~~~~~~l~~~~~~Lk 294 (343)
T 2pjd_A 242 AN----GVEGEVFASNVFSEV---KGRFDMIISNPPFHDGMQ--------------------TSLDAAQTLIRGAVRHLN 294 (343)
T ss_dssp HT----TCCCEEEECSTTTTC---CSCEEEEEECCCCCSSSH--------------------HHHHHHHHHHHHHGGGEE
T ss_pred Hh----CCCCEEEEccccccc---cCCeeEEEECCCcccCcc--------------------CCHHHHHHHHHHHHHhCC
Confidence 64 445778999987643 468999999999873210 012346789999999999
Q ss_pred cCeEEEEEEcC
Q psy2395 524 KNGLLLIEHGY 534 (570)
Q Consensus 524 pgG~l~~~~~~ 534 (570)
|||.+++..+.
T Consensus 295 pgG~l~i~~~~ 305 (343)
T 2pjd_A 295 SGGELRIVANA 305 (343)
T ss_dssp EEEEEEEEEET
T ss_pred CCcEEEEEEcC
Confidence 99999987654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.7e-13 Score=130.49 Aligned_cols=120 Identities=18% Similarity=0.182 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
+....++..+... .++.+|||+|||+|..++.+++..+++.+|+|+|+++.+++.|++|+...+ ...+++++++|+
T Consensus 44 ~~~~~~l~~l~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~ 119 (223)
T 3duw_A 44 PTQGKFLQLLVQI--QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN--LNDRVEVRTGLA 119 (223)
T ss_dssp HHHHHHHHHHHHH--HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCH
T ss_pred HHHHHHHHHHHHh--hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCH
Confidence 4444444444433 256799999999999999999887646899999999999999999998743 334699999999
Q ss_pred ccccccC----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 461 YNNLQNY----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 461 ~~~l~~~----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.+.++.. .++||+|+++++. ..+..+++.+.++|+|||++++..
T Consensus 120 ~~~~~~~~~~~~~~fD~v~~d~~~----------------------------~~~~~~l~~~~~~L~pgG~lv~~~ 167 (223)
T 3duw_A 120 LDSLQQIENEKYEPFDFIFIDADK----------------------------QNNPAYFEWALKLSRPGTVIIGDN 167 (223)
T ss_dssp HHHHHHHHHTTCCCCSEEEECSCG----------------------------GGHHHHHHHHHHTCCTTCEEEEES
T ss_pred HHHHHHHHhcCCCCcCEEEEcCCc----------------------------HHHHHHHHHHHHhcCCCcEEEEeC
Confidence 7654321 1579999998651 134678889999999999888753
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.51 E-value=9.8e-14 Score=136.35 Aligned_cols=146 Identities=15% Similarity=0.164 Sum_probs=106.7
Q ss_pred hHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 382 ETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 382 ~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
.+..++..++.... .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++..++ ..++.++++|
T Consensus 62 ~~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d 136 (241)
T 2ex4_A 62 SSRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCG 136 (241)
T ss_dssp HHHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECC
T ss_pred hHHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC---CceEEEEEcC
Confidence 34455555444332 257899999999999999988765 4699999999999999999987531 3358999999
Q ss_pred cccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-----
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----- 534 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----- 534 (570)
+.+ ++...++||+|+++-.+...+ -..+..+++.+.++|+|||++++..+.
T Consensus 137 ~~~-~~~~~~~fD~v~~~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 192 (241)
T 2ex4_A 137 LQD-FTPEPDSYDVIWIQWVIGHLT-----------------------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 192 (241)
T ss_dssp GGG-CCCCSSCEEEEEEESCGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSE
T ss_pred hhh-cCCCCCCEEEEEEcchhhhCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEEEccCCCcc
Confidence 865 333346899999964322110 013468999999999999999884321
Q ss_pred ----------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 ----------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 ----------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
...+.+.+++.++||..+.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 224 (241)
T 2ex4_A 193 ILDDVDSSVCRDLDVVRRIICSAGLSLLAEER 224 (241)
T ss_dssp EEETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred eecccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence 1478899999999999887654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-13 Score=129.40 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=100.5
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++.. ++.++++|+.+ ++..+++||+|+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~d~~~-~~~~~~~fD~v~~~ 109 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLG---HQIEGLEPATRLVELARQTHP--------SVTFHHGTITD-LSDSPKRWAGLLAW 109 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTT---CCEEEECCCHHHHHHHHHHCT--------TSEEECCCGGG-GGGSCCCEEEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHhCC--------CCeEEeCcccc-cccCCCCeEEEEeh
Confidence 6799999999999999999763 589999999999999998732 48899999966 44445799999997
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------CCHHHHH
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----------------NQSNLVR 541 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~l~ 541 (570)
..+...+ .+....+++.+.+.|+|||++++.... ...+.+.
T Consensus 110 ~~l~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (203)
T 3h2b_A 110 YSLIHMG-----------------------PGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELA 166 (203)
T ss_dssp SSSTTCC-----------------------TTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHH
T ss_pred hhHhcCC-----------------------HHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHH
Confidence 5433211 013478899999999999999986632 2368899
Q ss_pred HHHHHCCCeeEEEEecCC
Q psy2395 542 KLLFKYGFSDIKSWRDLS 559 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~~D~~ 559 (570)
+++.++||..+.+...-.
T Consensus 167 ~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 167 QALETAGFQVTSSHWDPR 184 (203)
T ss_dssp HHHHHTTEEEEEEEECTT
T ss_pred HHHHHCCCcEEEEEecCC
Confidence 999999999987765433
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.5e-13 Score=130.49 Aligned_cols=142 Identities=18% Similarity=0.222 Sum_probs=107.7
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.+.+.+...+ +++.+|||+|||+|.++..+++. .+|+|+|+|+.+++.|++++..+ +.+++++++|+.+.
T Consensus 22 ~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~- 91 (243)
T 3d2l_A 22 EWVAWVLEQV-EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMET----NRHVDFWVQDMREL- 91 (243)
T ss_dssp HHHHHHHHHS-CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCGGGC-
T ss_pred HHHHHHHHHc-CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhc----CCceEEEEcChhhc-
Confidence 3445555543 45689999999999999998854 58999999999999999998763 45689999999663
Q ss_pred ccCCCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc----------
Q psy2395 465 QNYKKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG---------- 533 (570)
Q Consensus 465 ~~~~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~---------- 533 (570)
+. .++||+|++++ ++... ........+++.+.++|+|||.+++.++
T Consensus 92 ~~-~~~fD~v~~~~~~~~~~----------------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 148 (243)
T 3d2l_A 92 EL-PEPVDAITILCDSLNYL----------------------QTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFN 148 (243)
T ss_dssp CC-SSCEEEEEECTTGGGGC----------------------CSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTS
T ss_pred CC-CCCcCEEEEeCCchhhc----------------------CCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcC
Confidence 22 37899999964 22110 0123457889999999999999987431
Q ss_pred ---------------------------------------------------CCCHHHHHHHHHHCCCeeEEEEecCC
Q psy2395 534 ---------------------------------------------------YNQSNLVRKLLFKYGFSDIKSWRDLS 559 (570)
Q Consensus 534 ---------------------------------------------------~~~~~~l~~ll~~~Gf~~i~~~~D~~ 559 (570)
....+++.++|+++||+.+.++.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 225 (243)
T 3d2l_A 149 GKTYATHAEQSSYIWFADPGEEPLSVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFK 225 (243)
T ss_dssp SEEEEEECSSEEEEEEEEECSSTTEEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTS
T ss_pred CcceeEECCCcEEEEEeecCccccEEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcc
Confidence 12467899999999999999988753
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=131.55 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=102.8
Q ss_pred hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc--CCCCEEEEE
Q psy2395 381 PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK--YNIPIKFIK 457 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~--~~~~v~~~~ 457 (570)
+......+.+...+. .++.+|||+|||+|.++..+++.++ ..+|+|+|+|+.+++.|++++..++.. ...++++++
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~ 90 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQ 90 (217)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEE
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEe
Confidence 344444444444322 3577999999999999999998764 479999999999999999998753210 012699999
Q ss_pred cccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---
Q psy2395 458 SNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--- 534 (570)
Q Consensus 458 ~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--- 534 (570)
+|+.. .+...++||+|+++..+...+ ...+..+++.+.++|+|||.+++....
T Consensus 91 ~d~~~-~~~~~~~fD~v~~~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~li~~~~~~~~ 146 (217)
T 3jwh_A 91 GALTY-QDKRFHGYDAATVIEVIEHLD-----------------------LSRLGAFERVLFEFAQPKIVIVTTPNIEYN 146 (217)
T ss_dssp CCTTS-CCGGGCSCSEEEEESCGGGCC-----------------------HHHHHHHHHHHHTTTCCSEEEEEEEBHHHH
T ss_pred CCccc-ccccCCCcCEEeeHHHHHcCC-----------------------HHHHHHHHHHHHHHcCCCEEEEEccCcccc
Confidence 99843 333346899999965432111 124478999999999999977664321
Q ss_pred -------------------CCHHHHH----HHHHHCCCeeE
Q psy2395 535 -------------------NQSNLVR----KLLFKYGFSDI 552 (570)
Q Consensus 535 -------------------~~~~~l~----~ll~~~Gf~~i 552 (570)
...+++. .++.++||.+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~ 187 (217)
T 3jwh_A 147 VKFANLPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQ 187 (217)
T ss_dssp HHTC-----------CCSCBCHHHHHHHHHHHHHHSSEEEE
T ss_pred hhhcccccccccccccccccCHHHHHHHHHHHHHHcCceEE
Confidence 1344555 78888999764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.50 E-value=6.5e-14 Score=140.85 Aligned_cols=127 Identities=16% Similarity=0.138 Sum_probs=103.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh-cccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK-LTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.++.+|||+|||+|.++..+++...++.+|+|+|+|+.+++.|++|+..+ + ..+++++++|+.+.++ +++||+|
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~~~--~~~fD~V 183 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---IGNVRTSRSDIADFIS--DQMYDAV 183 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---CTTEEEECSCTTTCCC--SCCEEEE
T ss_pred CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---CCcEEEEECchhccCc--CCCccEE
Confidence 46789999999999999999987323579999999999999999999863 2 2369999999977443 3689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHCCCeeEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~Gf~~i~ 553 (570)
++|+|.. ..+++.+.+.|+|||++++..+.. +...+.+.+.+.||..++
T Consensus 184 i~~~~~~------------------------------~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~Gf~~~~ 233 (275)
T 1yb2_A 184 IADIPDP------------------------------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE 233 (275)
T ss_dssp EECCSCG------------------------------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred EEcCcCH------------------------------HHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEE
Confidence 9987621 356778888999999999988764 567778888889999888
Q ss_pred EEec
Q psy2395 554 SWRD 557 (570)
Q Consensus 554 ~~~D 557 (570)
.+..
T Consensus 234 ~~~~ 237 (275)
T 1yb2_A 234 TVEL 237 (275)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7763
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=132.63 Aligned_cols=135 Identities=18% Similarity=0.144 Sum_probs=103.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC--CCCEEEEEcccccccccCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY--NIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~--~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
+++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++..++... ..++.++++|+.. ++...++||+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~D~ 104 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASS-LSFHDSSFDF 104 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTS-CCSCTTCEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccc-cCCCCCceeE
Confidence 46789999999999999999976 3699999999999999999987532110 1258999999965 3433578999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc--------------------
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-------------------- 533 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-------------------- 533 (570)
|+++..+.... .......+++.+.+.|+|||.+++...
T Consensus 105 v~~~~~l~~~~----------------------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (235)
T 3sm3_A 105 AVMQAFLTSVP----------------------DPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPIT 162 (235)
T ss_dssp EEEESCGGGCC----------------------CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHHHHHHHHHHHH
T ss_pred EEEcchhhcCC----------------------CHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHHHHhhhhccch
Confidence 99976543221 112345899999999999999988532
Q ss_pred ---------------------CCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 534 ---------------------YNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 534 ---------------------~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
....+.+.++++++||.++.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~ 206 (235)
T 3sm3_A 163 KEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFRV 206 (235)
T ss_dssp CSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred hhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence 23568899999999999987654
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.7e-13 Score=144.78 Aligned_cols=168 Identities=14% Similarity=0.161 Sum_probs=111.6
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCE
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPI 453 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v 453 (570)
.+.+.....+..++..++.....++.+|||+|||+|..++.+|...++..+|+|+|+|+.+++.+++|+..++. .++
T Consensus 94 ~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---~nv 170 (479)
T 2frx_A 94 SGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---SNV 170 (479)
T ss_dssp TTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---CSE
T ss_pred CcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---CcE
Confidence 34444444444444333332112678999999999999999998765457999999999999999999987532 259
Q ss_pred EEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCc-cccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 454 KFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL-RFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 454 ~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~-~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.++++|+.+......++||+|++|||+.........+... .+.|.. ...-......++..+.++|||||++++.+
T Consensus 171 ~~~~~D~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~----~~~l~~~q~~iL~~a~~~LkpGG~LvysT 246 (479)
T 2frx_A 171 ALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPES----NQEIAATQRELIDSAFHALRPGGTLVYST 246 (479)
T ss_dssp EEECCCSTTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHH----HHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCHHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhH----HHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999999664322346899999999987543221111111 011100 00001234689999999999999998865
Q ss_pred cC----CCHHHHHHHHHHCC
Q psy2395 533 GY----NQSNLVRKLLFKYG 548 (570)
Q Consensus 533 ~~----~~~~~l~~ll~~~G 548 (570)
.. .+...+..++.+++
T Consensus 247 cs~~~~Ene~vv~~~l~~~~ 266 (479)
T 2frx_A 247 CTLNQEENEAVCLWLKETYP 266 (479)
T ss_dssp SCCSSTTTHHHHHHHHHHST
T ss_pred ccCCcccCHHHHHHHHHHCC
Confidence 32 44556677777764
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=143.67 Aligned_cols=132 Identities=23% Similarity=0.304 Sum_probs=99.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC---CCceeE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY---KKLFNI 473 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~ 473 (570)
++.+|||+|||+|.+++.++.. ..+|+|+|+|+.+++.|++|+..|+. .+++++++|+.+.++.. ..+||+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~---~~~~~~~~d~~~~~~~~~~~~~~fD~ 282 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFDL 282 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC---CCceEEECCHHHHHHHHHhcCCCeeE
Confidence 5679999999999999999976 36899999999999999999998632 23999999997754421 468999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC--H----HHHHHHHHHC
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ--S----NLVRKLLFKY 547 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~----~~l~~ll~~~ 547 (570)
|++|||++..... . + ......+..++..+.++|+|||++++...... . ..+.+.+.+.
T Consensus 283 Ii~dpP~~~~~~~-----~--------~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~ 346 (382)
T 1wxx_A 283 VVLDPPAFAKGKK-----D--------V---ERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDA 346 (382)
T ss_dssp EEECCCCSCCSTT-----S--------H---HHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCCChh-----H--------H---HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 9999998754311 0 0 01234678899999999999999988765422 2 2344556667
Q ss_pred CCe
Q psy2395 548 GFS 550 (570)
Q Consensus 548 Gf~ 550 (570)
|..
T Consensus 347 g~~ 349 (382)
T 1wxx_A 347 HRL 349 (382)
T ss_dssp TCC
T ss_pred CCe
Confidence 643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=139.89 Aligned_cols=116 Identities=14% Similarity=0.135 Sum_probs=85.4
Q ss_pred HHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC
Q psy2395 389 LIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK 468 (570)
Q Consensus 389 ~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~ 468 (570)
.++..+..++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...+.....+++++++|+.+. +. +
T Consensus 74 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~~-~ 148 (299)
T 3g2m_A 74 EFATRTGPVSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-AL-D 148 (299)
T ss_dssp HHHHHHCCCCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-CC-S
T ss_pred HHHHhhCCCCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-Cc-C
Confidence 333333444569999999999999999966 368999999999999999998853111115799999999763 32 5
Q ss_pred CceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 469 KLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 469 ~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++||+|++.. .+... ..+....+++.+.+.|+|||++++.+
T Consensus 149 ~~fD~v~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~~~~ 190 (299)
T 3g2m_A 149 KRFGTVVISSGSINEL-----------------------DEADRRGLYASVREHLEPGGKFLLSL 190 (299)
T ss_dssp CCEEEEEECHHHHTTS-----------------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEECCcccccC-----------------------CHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 7899999731 11100 11245789999999999999999865
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-13 Score=136.06 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=101.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.|++++. ..++.++++|+.+ ++..+++||+|++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~-~~~~~~~fD~v~~ 114 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIED-IAIEPDAYNVVLS 114 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGG-CCCCTTCEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhh-CCCCCCCeEEEEE
Confidence 678999999999999999998763 399999999999999998864 3469999999965 4444579999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------------- 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 534 (570)
+..+... .....+++.+.++|+|||.+++.++.
T Consensus 115 ~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (253)
T 3g5l_A 115 SLALHYI-------------------------ASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHW 169 (253)
T ss_dssp ESCGGGC-------------------------SCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEE
T ss_pred chhhhhh-------------------------hhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEE
Confidence 6543211 12478899999999999999986421
Q ss_pred ------------------------CCHHHHHHHHHHCCCeeEEEEec
Q psy2395 535 ------------------------NQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 535 ------------------------~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
...+.+.++|.++||.++.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 170 PVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp EECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred EeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 05688999999999999887754
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=131.64 Aligned_cols=141 Identities=18% Similarity=0.260 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
|....+++.+ ...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++..++ ..++.++++|+
T Consensus 8 ~~~~~~~~~~---~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~---~~~v~~~~~d~ 78 (239)
T 1xxl_A 8 HSLGLMIKTA---ECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTA 78 (239)
T ss_dssp HHHHHHHHHH---TCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBT
T ss_pred CCcchHHHHh---CcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcC---CCCeEEEeccc
Confidence 3344444443 23577899999999999999998765 489999999999999999988642 23699999999
Q ss_pred ccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------
Q psy2395 461 YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------ 534 (570)
Q Consensus 461 ~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------ 534 (570)
.+ ++..+++||+|+++...... .....++.++.++|+|||++++....
T Consensus 79 ~~-~~~~~~~fD~v~~~~~l~~~-------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 132 (239)
T 1xxl_A 79 ES-LPFPDDSFDIITCRYAAHHF-------------------------SDVRKAVREVARVLKQDGRFLLVDHYAPEDPV 132 (239)
T ss_dssp TB-CCSCTTCEEEEEEESCGGGC-------------------------SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHH
T ss_pred cc-CCCCCCcEEEEEECCchhhc-------------------------cCHHHHHHHHHHHcCCCcEEEEEEcCCCCChh
Confidence 55 44445789999996432211 12368899999999999999885321
Q ss_pred -------------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 -------------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 -------------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+.+++.++||..+.+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~ 173 (239)
T 1xxl_A 133 LDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQK 173 (239)
T ss_dssp HHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHhccccccCCCCHHHHHHHHHHCCCcEEEEEe
Confidence 2346788889999999876654
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=133.56 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=93.6
Q ss_pred chhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
.+....++..++.. .++.+|||+|||+|..++.++...+ +.+|+|+|+|+.+++.|++++...+ ...+++++++|
T Consensus 56 ~~~~~~~l~~~~~~--~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d 130 (232)
T 3ntv_A 56 DRLTLDLIKQLIRM--NNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYH--FENQVRIIEGN 130 (232)
T ss_dssp CHHHHHHHHHHHHH--HTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESC
T ss_pred CHHHHHHHHHHHhh--cCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEECC
Confidence 34444444444443 2567999999999999999998654 6899999999999999999998742 23479999999
Q ss_pred cccccc-cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 460 WYNNLQ-NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 460 ~~~~l~-~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+.+.++ ...++||+|+++++.. .+..+++.+.++|+|||++++.
T Consensus 131 ~~~~~~~~~~~~fD~V~~~~~~~----------------------------~~~~~l~~~~~~LkpgG~lv~d 175 (232)
T 3ntv_A 131 ALEQFENVNDKVYDMIFIDAAKA----------------------------QSKKFFEIYTPLLKHQGLVITD 175 (232)
T ss_dssp GGGCHHHHTTSCEEEEEEETTSS----------------------------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred HHHHHHhhccCCccEEEEcCcHH----------------------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 988666 4457899999976421 2467899999999999999873
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.1e-13 Score=131.21 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=103.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc---cccCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN---LQNYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~fD 472 (570)
.++.+|||+|||+|.++..++...+ ..+|+|+|+|+.+++.|++|+.. . .++.++.+|+.+. .+. .++||
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~----~-~~v~~~~~d~~~~~~~~~~-~~~~D 145 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE----R-ENIIPILGDANKPQEYANI-VEKVD 145 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT----C-TTEEEEECCTTCGGGGTTT-SCCEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhc----C-CCeEEEECCCCCccccccc-CccEE
Confidence 4678999999999999999998865 57999999999999999999874 2 5699999999652 222 26899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---CC--------HHHHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---NQ--------SNLVR 541 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---~~--------~~~l~ 541 (570)
+|+.++|.. .....+++.+.+.|+|||++++.+.. .. ...+.
T Consensus 146 ~v~~~~~~~---------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~l~ 198 (230)
T 1fbn_A 146 VIYEDVAQP---------------------------NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKE 198 (230)
T ss_dssp EEEECCCST---------------------------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHH
T ss_pred EEEEecCCh---------------------------hHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCCCHHHhhHHHHH
Confidence 999865421 13467789999999999999886421 11 14555
Q ss_pred HHHHHCCCeeEEEEecCCCC---ceEEEEEe
Q psy2395 542 KLLFKYGFSDIKSWRDLSGI---ERVTQGKI 569 (570)
Q Consensus 542 ~ll~~~Gf~~i~~~~D~~g~---~R~~~~~~ 569 (570)
+|.++||..++.. ++... .-++++++
T Consensus 199 -~l~~~Gf~~~~~~-~~~~~~~~~~~v~~~k 227 (230)
T 1fbn_A 199 -ILEAGGFKIVDEV-DIEPFEKDHVMFVGIW 227 (230)
T ss_dssp -HHHHHTEEEEEEE-ECTTTSTTEEEEEEEE
T ss_pred -HHHHCCCEEEEEE-ccCCCccceEEEEEEe
Confidence 8888999987765 33333 34566654
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.6e-13 Score=131.03 Aligned_cols=120 Identities=14% Similarity=0.210 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
+....++..+... .++.+|||+|||+|..++.+++..+++.+|+|+|+|+.+++.|++|+..++ ...+++++++|+
T Consensus 49 ~~~~~~l~~l~~~--~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g--~~~~v~~~~~d~ 124 (248)
T 3tfw_A 49 ANQGQFLALLVRL--TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG--VDQRVTLREGPA 124 (248)
T ss_dssp HHHHHHHHHHHHH--HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTT--CTTTEEEEESCH
T ss_pred HHHHHHHHHHHhh--cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCH
Confidence 3344444444332 256799999999999999999887646899999999999999999998753 334699999999
Q ss_pred ccccccCC--CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 461 YNNLQNYK--KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 461 ~~~l~~~~--~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.+.++... ++||+|+++.+. ..+..+++.+.++|+|||++++..
T Consensus 125 ~~~l~~~~~~~~fD~V~~d~~~----------------------------~~~~~~l~~~~~~LkpGG~lv~~~ 170 (248)
T 3tfw_A 125 LQSLESLGECPAFDLIFIDADK----------------------------PNNPHYLRWALRYSRPGTLIIGDN 170 (248)
T ss_dssp HHHHHTCCSCCCCSEEEECSCG----------------------------GGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred HHHHHhcCCCCCeEEEEECCch----------------------------HHHHHHHHHHHHhcCCCeEEEEeC
Confidence 77555433 489999997641 134678889999999999998743
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.6e-13 Score=135.02 Aligned_cols=130 Identities=14% Similarity=0.230 Sum_probs=101.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ ...+++++++|+.+ ++..+++||+|+
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~-~~~~~~~fD~v~ 155 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLE-IPCEDNSYDFIW 155 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTS-CSSCTTCEEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcC--CCcceEEEEcCccc-CCCCCCCEeEEE
Confidence 567899999999999999999875 3699999999999999999987643 33469999999965 444457899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++..+...+ ....+++++.++|+|||++++..+.
T Consensus 156 ~~~~l~~~~-------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (297)
T 2o57_A 156 SQDAFLHSP-------------------------DKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHD 210 (297)
T ss_dssp EESCGGGCS-------------------------CHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHHHHHHHTCSS
T ss_pred ecchhhhcC-------------------------CHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHHHHHHHhcCCC
Confidence 964332111 1378899999999999999885421
Q ss_pred -CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 -NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 -~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
.....+.+++.++||..+.+.
T Consensus 211 ~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 211 MGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp CCCHHHHHHHHHHTTEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCeEEEEE
Confidence 134567889999999988764
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=144.58 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=102.7
Q ss_pred ccCeeeeecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
+.+..|.++++.|.+. ..++.+++++.. ..++.+|||+|||+|.+++.+|+.. .+|+|+|+|+.|++.|++|+
T Consensus 258 ~~g~~f~~~~~~F~q~n~~~~e~l~~~~~~--~~~~~~VLDlgcG~G~~sl~la~~~---~~V~gvD~s~~ai~~A~~n~ 332 (425)
T 2jjq_A 258 LDDVDYLIHPNSFFQTNSYQAVNLVRKVSE--LVEGEKILDMYSGVGTFGIYLAKRG---FNVKGFDSNEFAIEMARRNV 332 (425)
T ss_dssp ETTEEEEECTTSCCCSBHHHHHHHHHHHHH--HCCSSEEEEETCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHH
T ss_pred ECCEEEEEccccccccCHHHHHHHHHHhhc--cCCCCEEEEeeccchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHH
Confidence 4689999999999865 567788888776 3467799999999999999999753 68999999999999999999
Q ss_pred HhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
..|+ ..++|+++|+.+.++ .+||+|++|||+.... ..+++.+. .|
T Consensus 333 ~~ng----l~v~~~~~d~~~~~~---~~fD~Vv~dPPr~g~~---------------------------~~~~~~l~-~l 377 (425)
T 2jjq_A 333 EINN----VDAEFEVASDREVSV---KGFDTVIVDPPRAGLH---------------------------PRLVKRLN-RE 377 (425)
T ss_dssp HHHT----CCEEEEECCTTTCCC---TTCSEEEECCCTTCSC---------------------------HHHHHHHH-HH
T ss_pred HHcC----CcEEEEECChHHcCc---cCCCEEEEcCCccchH---------------------------HHHHHHHH-hc
Confidence 8753 239999999977543 3899999999974211 23444433 48
Q ss_pred ccCeEEEEEEcC
Q psy2395 523 VKNGLLLIEHGY 534 (570)
Q Consensus 523 kpgG~l~~~~~~ 534 (570)
+|+|++++.+.+
T Consensus 378 ~p~givyvsc~p 389 (425)
T 2jjq_A 378 KPGVIVYVSCNP 389 (425)
T ss_dssp CCSEEEEEESCH
T ss_pred CCCcEEEEECCh
Confidence 999999987654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=135.65 Aligned_cols=147 Identities=20% Similarity=0.212 Sum_probs=111.4
Q ss_pred CCccccchhHHHHHHHHHhhc-----------------CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHH
Q psy2395 374 SDVLIPRPETELLVDLIVKKT-----------------FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~-----------------~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~ 436 (570)
+.+++|+|++..+.+.+.... ..++.+|||+|||+|.++..+++. ..+|+++|+|+.+++
T Consensus 51 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~ 127 (248)
T 2yvl_A 51 NGFEVYRPTLEEIILLGFERKTQIIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYK 127 (248)
T ss_dssp TTEEEECCCHHHHHHHTSCCSSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHH
T ss_pred EEEEEeCCCHHHHHHhcCcCCCCcccchhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHH
Confidence 567788887776664433211 136789999999999999999987 369999999999999
Q ss_pred HHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 437 IAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 437 ~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
.|++|...++ ...++++..+|+.+... ..++||+|++|+|.. ..+++
T Consensus 128 ~a~~~~~~~~--~~~~~~~~~~d~~~~~~-~~~~~D~v~~~~~~~------------------------------~~~l~ 174 (248)
T 2yvl_A 128 TAQKNLKKFN--LGKNVKFFNVDFKDAEV-PEGIFHAAFVDVREP------------------------------WHYLE 174 (248)
T ss_dssp HHHHHHHHTT--CCTTEEEECSCTTTSCC-CTTCBSEEEECSSCG------------------------------GGGHH
T ss_pred HHHHHHHHcC--CCCcEEEEEcChhhccc-CCCcccEEEECCcCH------------------------------HHHHH
Confidence 9999998642 23469999999977541 236899999988621 24567
Q ss_pred HHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeEEEEec
Q psy2395 517 NASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
.+.+.|+|||++++..+. .+...+...+.+. |..++.+..
T Consensus 175 ~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~ 215 (248)
T 2yvl_A 175 KVHKSLMEGAPVGFLLPTANQVIKLLESIENY-FGNLEVVEI 215 (248)
T ss_dssp HHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT-EEEEEEEEE
T ss_pred HHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh-CCcceEEEe
Confidence 778899999999998875 4666777777776 887766543
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.9e-13 Score=134.58 Aligned_cols=131 Identities=27% Similarity=0.292 Sum_probs=102.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..++ +.+|+|+|+|+.+++.|++++..++ ..++.++++|+.+ ++..+++||+|+
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~-~~~~~~~fD~v~ 110 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNG---IKNVKFLQANIFS-LPFEDSSFDHIF 110 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGG-CCSCTTCEEEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC---CCCcEEEEccccc-CCCCCCCeeEEE
Confidence 5678999999999999999998875 5899999999999999999998642 2369999999965 343457999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++..+...+ ....+++.+.++|+|||++++..+.
T Consensus 111 ~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (276)
T 3mgg_A 111 VCFVLEHLQ-------------------------SPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLI 165 (276)
T ss_dssp EESCGGGCS-------------------------CHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHH
T ss_pred EechhhhcC-------------------------CHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHH
Confidence 975543211 1257889999999999999886422
Q ss_pred ----------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 ----------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 ----------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+..+|+++||..+.+..
T Consensus 166 ~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~~ 197 (276)
T 3mgg_A 166 RVQAYMKGNSLVGRQIYPLLQESGFEKIRVEP 197 (276)
T ss_dssp HHHHHTTCCTTGGGGHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCCCcchHHHHHHHHHHCCCCeEEEee
Confidence 1124677889999999887653
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-13 Score=131.71 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=105.4
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.++..+.... +++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++.. ..+++++++|+.+ +
T Consensus 42 ~~~~~l~~~~-~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~-~ 110 (242)
T 3l8d_A 42 TIIPFFEQYV-KKEAEVLDVGCGDGYGTYKLSRTG---YKAVGVDISEVMIQKGKERGE------GPDLSFIKGDLSS-L 110 (242)
T ss_dssp THHHHHHHHS-CTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHTTTC------BTTEEEEECBTTB-C
T ss_pred HHHHHHHHHc-CCCCeEEEEcCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhcc------cCCceEEEcchhc-C
Confidence 3444444433 467799999999999999999763 689999999999999988752 3469999999965 3
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------- 534 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------- 534 (570)
+..+++||+|+++..+...+ ....+++.+.+.|+|||.+++....
T Consensus 111 ~~~~~~fD~v~~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~ 165 (242)
T 3l8d_A 111 PFENEQFEAIMAINSLEWTE-------------------------EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSY 165 (242)
T ss_dssp SSCTTCEEEEEEESCTTSSS-------------------------CHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGG
T ss_pred CCCCCCccEEEEcChHhhcc-------------------------CHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhh
Confidence 43457999999975543221 2367899999999999999986522
Q ss_pred ------------CCHHHHHHHHHHCCCeeEEEEecC
Q psy2395 535 ------------NQSNLVRKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 535 ------------~~~~~l~~ll~~~Gf~~i~~~~D~ 558 (570)
.....+.+++.++||..+.....+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 201 (242)
T 3l8d_A 166 PRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGIGVY 201 (242)
T ss_dssp GGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred hhhccccccccCCCHHHHHHHHHHcCCEEEEeeccc
Confidence 224678999999999998876443
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.9e-13 Score=144.79 Aligned_cols=145 Identities=23% Similarity=0.275 Sum_probs=103.7
Q ss_pred cCeeeeecC-----CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 366 YGLVLNITS-----DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 366 ~~~~~~v~~-----~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+..|.+++ +.|........+ +. ....++.+|||+|||+|.+++.++..+ ..+|+|+|+|+.+++.|++
T Consensus 185 ~g~~~~~~~~~~~tg~f~~~~~~~~~---~~-~~~~~~~~VLDl~~G~G~~~~~la~~g--~~~v~~vD~s~~~l~~a~~ 258 (396)
T 2as0_A 185 GRAKFIVDMRGQKTGFFLDQRENRLA---LE-KWVQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKE 258 (396)
T ss_dssp TTEEEEEESSSSSSCCCSTTHHHHHH---HG-GGCCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEEeccccccCccCCHHHHHHH---HH-HHhhCCCeEEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHH
Confidence 467777775 344322233222 22 223467899999999999999999763 3599999999999999999
Q ss_pred HHHhhcccCCCCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 441 NAKKKLTKYNIPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 441 n~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
|+..|+. ..+++|+++|+.+.++. ...+||+|++|||++...... + ......+..++..
T Consensus 259 n~~~n~~--~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~-------------~---~~~~~~~~~~l~~ 320 (396)
T 2as0_A 259 NAKLNGV--EDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKD-------------L---KAGLRAYFNVNFA 320 (396)
T ss_dssp HHHHTTC--GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGG-------------H---HHHHHHHHHHHHH
T ss_pred HHHHcCC--CccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHH-------------H---HHHHHHHHHHHHH
Confidence 9998632 22699999999775432 136899999999987533110 0 0122456789999
Q ss_pred HhhccccCeEEEEEEcC
Q psy2395 518 ASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 518 ~~~~LkpgG~l~~~~~~ 534 (570)
+.++|+|||++++....
T Consensus 321 ~~~~LkpgG~lv~~~~~ 337 (396)
T 2as0_A 321 GLNLVKDGGILVTCSCS 337 (396)
T ss_dssp HHTTEEEEEEEEEEECC
T ss_pred HHHhcCCCcEEEEEECC
Confidence 99999999998886544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.48 E-value=7e-13 Score=127.96 Aligned_cols=135 Identities=17% Similarity=0.137 Sum_probs=102.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc---cccCCCceeE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN---LQNYKKLFNI 473 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~---l~~~~~~fD~ 473 (570)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++ .++.+..+|+.+. ......+||+
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh---------cccccchhhHHhhcccccccCCCccE
Confidence 5689999999999999999966 36899999999999999877 1256888887553 1122356999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------------------
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------------------- 534 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------------------- 534 (570)
|+++..+. .. ....+++.+.++|+|||++++....
T Consensus 120 v~~~~~l~-~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (227)
T 3e8s_A 120 ICANFALL-HQ-------------------------DIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFA 173 (227)
T ss_dssp EEEESCCC-SS-------------------------CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCT
T ss_pred EEECchhh-hh-------------------------hHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhh
Confidence 99987655 21 1267889999999999999986531
Q ss_pred -------------CCHHHHHHHHHHCCCeeEEEEec-CCC----CceEEEEEe
Q psy2395 535 -------------NQSNLVRKLLFKYGFSDIKSWRD-LSG----IERVTQGKI 569 (570)
Q Consensus 535 -------------~~~~~l~~ll~~~Gf~~i~~~~D-~~g----~~R~~~~~~ 569 (570)
...+.+.++|.++||.++.+... ..+ ...++++++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k 226 (227)
T 3e8s_A 174 GFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAER 226 (227)
T ss_dssp TSSSCCCCEEEEECCHHHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEE
T ss_pred ccccCcccceEEEecHHHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeec
Confidence 14688999999999999887652 222 246677765
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-13 Score=133.56 Aligned_cols=127 Identities=14% Similarity=0.086 Sum_probs=102.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh-cccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK-LTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.++.+|||+|||+|.++..+++...+..+|+++|+|+.+++.|++|+..+ + ..++.+.++|+.+. +...++||+|
T Consensus 95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g---~~~v~~~~~d~~~~-~~~~~~~D~v 170 (258)
T 2pwy_A 95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ---VENVRFHLGKLEEA-ELEEAAYDGV 170 (258)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC---CCCEEEEESCGGGC-CCCTTCEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC---CCCEEEEECchhhc-CCCCCCcCEE
Confidence 56789999999999999999988323579999999999999999999864 3 24699999999764 2223689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHCCCeeEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~Gf~~i~ 553 (570)
++|+|.. ..+++.+.+.|+|||.+++..+.. +...+.+.+.+.||..++
T Consensus 171 ~~~~~~~------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 171 ALDLMEP------------------------------WKVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEESSCG------------------------------GGGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTTEEEEE
T ss_pred EECCcCH------------------------------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCceEE
Confidence 9987621 356778888999999999988764 666777888889998876
Q ss_pred EEe
Q psy2395 554 SWR 556 (570)
Q Consensus 554 ~~~ 556 (570)
++.
T Consensus 221 ~~~ 223 (258)
T 2pwy_A 221 VLE 223 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=4.9e-13 Score=136.06 Aligned_cols=180 Identities=16% Similarity=0.231 Sum_probs=118.4
Q ss_pred cCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+|..+.++..+.++.++ .+.+....+.. .+.+.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|++|
T Consensus 56 ~g~~l~ldg~~~~~~~de~~y~e~l~~~~l~~-~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~ 133 (296)
T 1inl_A 56 LGVVFALDGITMTTEKDEFMYHEMLAHVPMFL-HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKY 133 (296)
T ss_dssp TEEEEEETTEEEEETTTHHHHHHHHHHHHHHH-SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHH
T ss_pred CcEEEEECCEEeecccchhHHHHHHhHHHHhc-CCCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHH
Confidence 46777777666666654 24444332222 24567999999999999999997643 57999999999999999999
Q ss_pred HHhhcccC-CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh
Q psy2395 442 AKKKLTKY-NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 442 ~~~~~~~~-~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
+....... ..+++++++|+.+.+....++||+|++|+|..... |...+ ....+++.+.+
T Consensus 134 ~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~~------------~~~~l--------~~~~~l~~~~~ 193 (296)
T 1inl_A 134 LKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAG------------QGGHL--------FTEEFYQACYD 193 (296)
T ss_dssp CHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------------------C--------CSHHHHHHHHH
T ss_pred hHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEcCCCcccC------------chhhh--------hHHHHHHHHHH
Confidence 75411012 45799999999776554457899999998642010 00001 12678889999
Q ss_pred ccccCeEEEEEEcC--CCH---HHHHHHHHHCCCeeEEEEe----cC-CCCceEEEEE
Q psy2395 521 YLVKNGLLLIEHGY--NQS---NLVRKLLFKYGFSDIKSWR----DL-SGIERVTQGK 568 (570)
Q Consensus 521 ~LkpgG~l~~~~~~--~~~---~~l~~ll~~~Gf~~i~~~~----D~-~g~~R~~~~~ 568 (570)
.|+|||++++..+. ... ..+.+.+++. |..+..+. .+ .|..-+++|.
T Consensus 194 ~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F~~v~~~~~~vp~~p~g~~~f~~as 250 (296)
T 1inl_A 194 ALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYTFAS 250 (296)
T ss_dssp HEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEEEEE
T ss_pred hcCCCcEEEEEccCcccCHHHHHHHHHHHHHH-CCceEEEEeecCccCCCceEEEEec
Confidence 99999999997643 233 3344555554 66666543 12 3555566665
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.2e-13 Score=136.05 Aligned_cols=129 Identities=10% Similarity=0.071 Sum_probs=102.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++..++ ...+++++++|+.+ ++..+++||+|+
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~-~~~~~~~fD~V~ 190 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELR--IDDHVRSRVCNMLD-TPFDKGAVTASW 190 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCTTS-CCCCTTCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC--CCCceEEEECChhc-CCCCCCCEeEEE
Confidence 467899999999999999999875 4799999999999999999998753 23469999999965 343357999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--C------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--N------------------ 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~------------------ 535 (570)
++..+... ....+++.+.++|+|||++++.... .
T Consensus 191 ~~~~l~~~--------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 3vc1_A 191 NNESTMYV--------------------------DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFEC 244 (312)
T ss_dssp EESCGGGS--------------------------CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHHTC
T ss_pred ECCchhhC--------------------------CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhhcC
Confidence 96432210 1478999999999999999875421 1
Q ss_pred ---CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ---QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ---~~~~l~~ll~~~Gf~~i~~~ 555 (570)
..+.+.++++++||..+.+.
T Consensus 245 ~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 245 NIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp CCCBHHHHHHHHHTTTEEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCEEEEEE
Confidence 24678899999999987665
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.8e-13 Score=145.34 Aligned_cols=172 Identities=18% Similarity=0.247 Sum_probs=118.0
Q ss_pred CCccccchhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 374 SDVLIPRPETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSK--NKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~--~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
..+|+|++.++.|++.+.... +.++.+|+|+|||||.+.+.+++... ....++|+|+++.++.+|+.|+..++.. .
T Consensus 197 G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-~ 275 (542)
T 3lkd_A 197 GEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP-I 275 (542)
T ss_dssp SSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC-G
T ss_pred CeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC-c
Confidence 356789999999999886322 23567999999999999999987742 2468999999999999999999865321 1
Q ss_pred CCEEEEEccccccc-c-cCCCceeEEEECCCCCCCCCcc-cCCCCccccccccccccCCChHHHHHHHHHHhhccc-cCe
Q psy2395 451 IPIKFIKSNWYNNL-Q-NYKKLFNIIVANPPYIPKGDIH-LNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV-KNG 526 (570)
Q Consensus 451 ~~v~~~~~D~~~~l-~-~~~~~fD~Iv~NPPy~~~~~~~-~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk-pgG 526 (570)
.++.+.++|.+... + ....+||+||+||||....... ......+|.+...+.....+ . ..++..+.++|+ |||
T Consensus 276 ~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~--~-~~Fl~~~l~~Lk~~gG 352 (542)
T 3lkd_A 276 ENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKA--D-FAFLLHGYYHLKQDNG 352 (542)
T ss_dssp GGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCC--H-HHHHHHHHHTBCTTTC
T ss_pred CccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchh--h-HHHHHHHHHHhCCCce
Confidence 25889999987641 2 2246899999999998432111 11111122211001111111 1 258888889999 999
Q ss_pred EEEEEEcCC-----C-HHHHHHHHHHCCC
Q psy2395 527 LLLIEHGYN-----Q-SNLVRKLLFKYGF 549 (570)
Q Consensus 527 ~l~~~~~~~-----~-~~~l~~ll~~~Gf 549 (570)
++.++++.. . ...+++.+.+.+.
T Consensus 353 r~a~VlP~g~Lf~~~~~~~iRk~Lle~~~ 381 (542)
T 3lkd_A 353 VMAIVLPHGVLFRGNAEGTIRKALLEEGA 381 (542)
T ss_dssp EEEEEEETHHHHCCTHHHHHHHHHHHTTC
T ss_pred eEEEEecchHhhCCchhHHHHHHHHhCCc
Confidence 999988753 2 3568888877664
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-12 Score=128.60 Aligned_cols=143 Identities=13% Similarity=0.045 Sum_probs=100.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD 472 (570)
..++.+|||+|||||.++..++....+..+|+|+|+|+.+++...+.+.. ..++.++++|+..... ...++||
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~nv~~i~~Da~~~~~~~~~~~~~D 148 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RPNIFPLLADARFPQSYKSVVENVD 148 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CTTEEEEECCTTCGGGTTTTCCCEE
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCeEEEEcccccchhhhccccceE
Confidence 35788999999999999999998764467999999999998666555543 2369999999975432 1236899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------CCHHHHHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----------NQSNLVRK 542 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----------~~~~~l~~ 542 (570)
+|++|.|.. +....+...+.++|||||++++.+.. ........
T Consensus 149 ~I~~d~a~~---------------------------~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~ 201 (232)
T 3id6_C 149 VLYVDIAQP---------------------------DQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVE 201 (232)
T ss_dssp EEEECCCCT---------------------------THHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHH
T ss_pred EEEecCCCh---------------------------hHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHH
Confidence 999986531 01233455666699999999986522 12355677
Q ss_pred HHHHCCCeeEEEEec--CCCCceEEEEEe
Q psy2395 543 LLFKYGFSDIKSWRD--LSGIERVTQGKI 569 (570)
Q Consensus 543 ll~~~Gf~~i~~~~D--~~g~~R~~~~~~ 569 (570)
.|+++||+.++...- +....-+++|++
T Consensus 202 ~L~~~gf~~~~~~~l~p~~~~h~~v~~~~ 230 (232)
T 3id6_C 202 KLENSNFETIQIINLDPYDKDHAIVLSKY 230 (232)
T ss_dssp HHHHTTEEEEEEEECTTTCSSCEEEEEEE
T ss_pred HHHHCCCEEEEEeccCCCcCceEEEEEEe
Confidence 888899998876632 122345666654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=149.78 Aligned_cols=166 Identities=15% Similarity=0.200 Sum_probs=113.0
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcC--------------CCcEEEEEeCCHHHHHHHH
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSK--------------NKIEIIATDISKFALKIAK 439 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~--------------~~~~V~gvDis~~al~~A~ 439 (570)
..+|+|++.++.|++.+. +.+.+|+|+|||||.+.+.+++... ....++|+|+++.++.+|+
T Consensus 225 G~fyTP~~Vv~lmv~ll~----p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~ 300 (544)
T 3khk_A 225 GQYYTPKSIVTLIVEMLE----PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA 300 (544)
T ss_dssp TTTCCCHHHHHHHHHHHC----CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred CeEeCCHHHHHHHHHHHh----cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence 456789999999988763 2334999999999999988865431 0358999999999999999
Q ss_pred HHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCcccccccccc--------ccCCChHHH
Q psy2395 440 KNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALT--------DYSNGLSSI 511 (570)
Q Consensus 440 ~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~--------~~~~gl~~~ 511 (570)
.|+..++. ..++.+.++|.+........+||+||+||||....... ......++.... ....+...
T Consensus 301 ~Nl~l~gi--~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~---~~~~~d~r~~~g~~~~~~~~~~~~~~~~- 374 (544)
T 3khk_A 301 MNMVIRGI--DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWH---EKLADDPRWTINTNGEKRILTPPTGNAN- 374 (544)
T ss_dssp HHHHHTTC--CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCC---GGGTTCGGGEECCC--CEECCCCTTCTH-
T ss_pred HHHHHhCC--CcccceeccchhcCcccccccccEEEECCCcCCccccc---hhhhhhhhhhcCcccccccccCCCcchh-
Confidence 99987532 22344588998764333346899999999998643211 111122222210 01111111
Q ss_pred HHHHHHHhhccccCeEEEEEEcCC-------CHHHHHHHHHHCCC
Q psy2395 512 KEIVKNASKYLVKNGLLLIEHGYN-------QSNLVRKLLFKYGF 549 (570)
Q Consensus 512 ~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~l~~ll~~~Gf 549 (570)
..++..+.++|+|||++.++++.. ....+++.+.+.+.
T Consensus 375 ~~Fl~~~l~~Lk~gGr~aiVlP~g~L~~~~~~~~~iRk~Lle~~~ 419 (544)
T 3khk_A 375 FAWMLHMLYHLAPTGSMALLLANGSMSSNTNNEGEIRKTLVEQDL 419 (544)
T ss_dssp HHHHHHHHHTEEEEEEEEEEEETHHHHCCGGGHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccCceEEEEecchhhhcCcchHHHHHHHHHhCCc
Confidence 258888889999999999988652 34678888877664
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.48 E-value=3.4e-13 Score=133.05 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=102.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|++++.. ..++.++++|+.+ ++...++||+|+
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~-~~~~~~~fD~v~ 163 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMET-ATLPPNTYDLIV 163 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGG-CCCCSSCEEEEE
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhcc-----CCceEEEEccHHH-CCCCCCCeEEEE
Confidence 467899999999999999999876 36899999999999999998763 2469999999965 343347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------CCHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----------------NQSNL 539 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~ 539 (570)
++..+...+ -.....+++.+.++|+|||++++..+. ...+.
T Consensus 164 ~~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (254)
T 1xtp_A 164 IQWTAIYLT-----------------------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH 220 (254)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHH
T ss_pred EcchhhhCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHH
Confidence 964322110 024578999999999999999986531 13578
Q ss_pred HHHHHHHCCCeeEEEEe
Q psy2395 540 VRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 540 l~~ll~~~Gf~~i~~~~ 556 (570)
+.+++.++||..+.+..
T Consensus 221 ~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 221 YKRLFNESGVRVVKEAF 237 (254)
T ss_dssp HHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHCCCEEEEeee
Confidence 99999999999987754
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.6e-13 Score=130.28 Aligned_cols=124 Identities=16% Similarity=0.130 Sum_probs=99.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
+++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++. +.+.++|+... + ..++||+|+
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~---------~~~~~~d~~~~-~-~~~~fD~v~ 107 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRLG---------RPVRTMLFHQL-D-AIDAYDAVW 107 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHT---------SCCEECCGGGC-C-CCSCEEEEE
T ss_pred CCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhcC---------CceEEeeeccC-C-CCCcEEEEE
Confidence 45779999999999999999976 3699999999999999998872 56788998653 3 458999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------CCHHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------NQSNLV 540 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------~~~~~l 540 (570)
++..+.... .+....+++.+.+.|+|||++++.++. ...+.+
T Consensus 108 ~~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (211)
T 3e23_A 108 AHACLLHVP-----------------------RDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWL 164 (211)
T ss_dssp ECSCGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHH
T ss_pred ecCchhhcC-----------------------HHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHH
Confidence 976543111 124578999999999999999987543 256889
Q ss_pred HHHHHHCC-CeeEEEEe
Q psy2395 541 RKLLFKYG-FSDIKSWR 556 (570)
Q Consensus 541 ~~ll~~~G-f~~i~~~~ 556 (570)
.+++.++| |..+.+..
T Consensus 165 ~~~l~~aG~f~~~~~~~ 181 (211)
T 3e23_A 165 RARYAEAGTWASVAVES 181 (211)
T ss_dssp HHHHHHHCCCSEEEEEE
T ss_pred HHHHHhCCCcEEEEEEe
Confidence 99999999 99987664
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=126.89 Aligned_cols=131 Identities=16% Similarity=0.213 Sum_probs=94.8
Q ss_pred ccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy2395 378 IPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK 457 (570)
Q Consensus 378 ~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~ 457 (570)
.|...+..++..+......++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++|+. ++++++
T Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~--------~~~~~~ 101 (200)
T 1ne2_A 32 TDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG--------GVNFMV 101 (200)
T ss_dssp CCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT--------TSEEEE
T ss_pred CCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhcC--------CCEEEE
Confidence 344455666655544333467799999999999999999763 3589999999999999999864 488999
Q ss_pred cccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH
Q psy2395 458 SNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS 537 (570)
Q Consensus 458 ~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 537 (570)
+|+.+ ++ ++||+|++||||+.... + ....+++.+.+.+ |.+++.++....
T Consensus 102 ~d~~~-~~---~~~D~v~~~~p~~~~~~---------------------~--~~~~~l~~~~~~~---g~~~~~~~~~~~ 151 (200)
T 1ne2_A 102 ADVSE-IS---GKYDTWIMNPPFGSVVK---------------------H--SDRAFIDKAFETS---MWIYSIGNAKAR 151 (200)
T ss_dssp CCGGG-CC---CCEEEEEECCCC------------------------------CHHHHHHHHHHE---EEEEEEEEGGGH
T ss_pred CcHHH-CC---CCeeEEEECCCchhccC---------------------c--hhHHHHHHHHHhc---CcEEEEEcCchH
Confidence 99966 32 68999999999975321 0 1145677777777 556666666667
Q ss_pred HHHHHHHHHCC
Q psy2395 538 NLVRKLLFKYG 548 (570)
Q Consensus 538 ~~l~~ll~~~G 548 (570)
..+.+.+...|
T Consensus 152 ~~~~~~~~~~g 162 (200)
T 1ne2_A 152 DFLRREFSARG 162 (200)
T ss_dssp HHHHHHHHHHE
T ss_pred HHHHHHHHHCC
Confidence 77888888888
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.47 E-value=8.3e-13 Score=130.29 Aligned_cols=106 Identities=17% Similarity=0.353 Sum_probs=82.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++.. .+.++.++++|+.+. +. .++||+|+
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~-~~-~~~fD~v~ 110 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKE----RNLKIEFLQGDVLEI-AF-KNEFDAVT 110 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH----TTCCCEEEESCGGGC-CC-CSCEEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHh----cCCceEEEECChhhc-cc-CCCccEEE
Confidence 45679999999999999999976 36899999999999999999876 344799999999763 22 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++..... + -..+....+++.+.++|+|||.+++.+
T Consensus 111 ~~~~~~~------------~----------~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 111 MFFSTIM------------Y----------FDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp ECSSGGG------------G----------SCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcCCchh------------c----------CCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 8421110 0 011345788999999999999998753
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.3e-13 Score=133.29 Aligned_cols=114 Identities=16% Similarity=0.212 Sum_probs=86.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++...+ ...++.++++|+.+.....+++||+|
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~fD~v 137 (298)
T 1ri5_A 62 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMK--RRFKVFFRAQDSYGRHMDLGKEFDVI 137 (298)
T ss_dssp CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSC--CSSEEEEEESCTTTSCCCCSSCEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHhcC--CCccEEEEECCccccccCCCCCcCEE
Confidence 4577899999999999999988764 3599999999999999999987532 22469999999976321134789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+++..++.. -........+++.+.++|+|||++++.++
T Consensus 138 ~~~~~l~~~---------------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 175 (298)
T 1ri5_A 138 SSQFSFHYA---------------------FSTSESLDIAQRNIARHLRPGGYFIMTVP 175 (298)
T ss_dssp EEESCGGGG---------------------GSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EECchhhhh---------------------cCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 996432110 01224567899999999999999998653
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=135.95 Aligned_cols=138 Identities=15% Similarity=0.101 Sum_probs=97.0
Q ss_pred HHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-cc
Q psy2395 388 DLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QN 466 (570)
Q Consensus 388 ~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~ 466 (570)
..+......++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++.. .+.++.++++|+.+.. +.
T Consensus 51 ~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~----~~~~v~~~~~d~~~~~~~~ 124 (236)
T 1zx0_A 51 HALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPR----QTHKVIPLKGLWEDVAPTL 124 (236)
T ss_dssp HHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGG----CSSEEEEEESCHHHHGGGS
T ss_pred HHHHhhcCCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHh----cCCCeEEEecCHHHhhccc
Confidence 33333334567899999999999999997644 35899999999999999998875 3457999999996642 33
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC----------C
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN----------Q 536 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~ 536 (570)
.+++||+|++| .|.... + .........+++++.++|||||++++..... .
T Consensus 125 ~~~~fD~V~~d-~~~~~~------------~-------~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~ 184 (236)
T 1zx0_A 125 PDGHFDGILYD-TYPLSE------------E-------TWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSD 184 (236)
T ss_dssp CTTCEEEEEEC-CCCCBG------------G-------GTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSC
T ss_pred CCCceEEEEEC-Ccccch------------h-------hhhhhhHHHHHHHHHHhcCCCeEEEEEecCcHHHhhchhhhh
Confidence 34789999995 111000 0 0012345678999999999999998642111 1
Q ss_pred -----HHHHHHHHHHCCCee
Q psy2395 537 -----SNLVRKLLFKYGFSD 551 (570)
Q Consensus 537 -----~~~l~~ll~~~Gf~~ 551 (570)
.+.....+.++||..
T Consensus 185 ~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 185 ITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp HHHHHHHHTHHHHHHTTCCG
T ss_pred hhhhccHHHHHHHHHCCCCC
Confidence 134456788899983
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=129.41 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=93.9
Q ss_pred cchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc
Q psy2395 379 PRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~ 458 (570)
+.+.+..++..+.... ++.+|||+|||+|..++.++...+.+.+|+++|+|+.+++.|++|+...+ ...+++++++
T Consensus 40 ~~~~~~~~l~~l~~~~--~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~ 115 (210)
T 3c3p_A 40 VDRQTGRLLYLLARIK--QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNG--LIDRVELQVG 115 (210)
T ss_dssp CCHHHHHHHHHHHHHH--CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHS--GGGGEEEEES
T ss_pred cCHHHHHHHHHHHHhh--CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCceEEEEEe
Confidence 4455666666655432 46799999999999999999876546899999999999999999998653 2346999999
Q ss_pred ccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 459 NWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 459 D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+.+.++...+ ||+|+++.+. ..+..+++.+.++|+|||++++.
T Consensus 116 d~~~~~~~~~~-fD~v~~~~~~----------------------------~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 116 DPLGIAAGQRD-IDILFMDCDV----------------------------FNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp CHHHHHTTCCS-EEEEEEETTT----------------------------SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cHHHHhccCCC-CCEEEEcCCh----------------------------hhhHHHHHHHHHhcCCCeEEEEE
Confidence 99775554446 9999997431 13468899999999999999874
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-12 Score=126.60 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=100.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD~ 473 (570)
.++.+|||+|||+|.++..++...++..+|+|+|+|+.+++.+++|+.. . .+++++++|+.+.. ....++||+
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~----~-~~v~~~~~d~~~~~~~~~~~~~~D~ 146 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE----R-RNIVPILGDATKPEEYRALVPKVDV 146 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS----C-TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc----c-CCCEEEEccCCCcchhhcccCCceE
Confidence 4677999999999999999998753347999999999999999999874 2 56999999997632 222368999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-----------HHHHHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-----------SNLVRK 542 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----------~~~l~~ 542 (570)
|++|+|.. .....++..+.++|+|||++++.+.... ..++..
T Consensus 147 v~~~~~~~---------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (227)
T 1g8a_A 147 IFEDVAQP---------------------------TQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERE 199 (227)
T ss_dssp EEECCCST---------------------------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHH
T ss_pred EEECCCCH---------------------------hHHHHHHHHHHHhcCCCCEEEEEEecCCCCCCCChhhhhHHHHHH
Confidence 99998711 1224558899999999999988653211 134444
Q ss_pred HHHHCCCeeEEEEecCCC--C-ceEEEEEe
Q psy2395 543 LLFKYGFSDIKSWRDLSG--I-ERVTQGKI 569 (570)
Q Consensus 543 ll~~~Gf~~i~~~~D~~g--~-~R~~~~~~ 569 (570)
+ .+. |..++... +.. . .-++++++
T Consensus 200 l-~~~-f~~~~~~~-~~~~~~~~~~~~~~~ 226 (227)
T 1g8a_A 200 L-SEY-FEVIERLN-LEPYEKDHALFVVRK 226 (227)
T ss_dssp H-HTT-SEEEEEEE-CTTTSSSEEEEEEEC
T ss_pred H-Hhh-ceeeeEec-cCcccCCCEEEEEEe
Confidence 4 666 98876653 322 2 33566654
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.7e-13 Score=131.61 Aligned_cols=119 Identities=22% Similarity=0.269 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
+....++..+... .++.+|||+|||+|..++.++...+++.+|+|+|+|+.+++.|++++..++ ...+++++++|+
T Consensus 50 ~~~~~~l~~l~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~ 125 (225)
T 3tr6_A 50 PEQAQLLALLVKL--MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG--LSDKIGLRLSPA 125 (225)
T ss_dssp HHHHHHHHHHHHH--HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCH
T ss_pred HHHHHHHHHHHHh--hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC--CCCceEEEeCCH
Confidence 4444555555443 256799999999999999999876546899999999999999999998753 234599999999
Q ss_pred ccccccCC-----CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNYK-----KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~~-----~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.++... ++||+|+++++. ..+..+++.+.++|+|||++++.
T Consensus 126 ~~~~~~~~~~~~~~~fD~v~~~~~~----------------------------~~~~~~l~~~~~~L~pgG~lv~~ 173 (225)
T 3tr6_A 126 KDTLAELIHAGQAWQYDLIYIDADK----------------------------ANTDLYYEESLKLLREGGLIAVD 173 (225)
T ss_dssp HHHHHHHHTTTCTTCEEEEEECSCG----------------------------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHhhhccCCCCccEEEECCCH----------------------------HHHHHHHHHHHHhcCCCcEEEEe
Confidence 76544322 689999998752 13567888999999999999874
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-13 Score=138.68 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=87.4
Q ss_pred eeeeecCCccccc--hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 368 LVLNITSDVLIPR--PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 368 ~~~~v~~~~~~pr--~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
+.|.++|+.|.+. ..++.++.++++.....+.+|||+|||+|.+++.+|+.. .+|+|+|+|+.|++.|++|+..|
T Consensus 182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~n 258 (369)
T 3bt7_A 182 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAAN 258 (369)
T ss_dssp CEEEEETTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHc
Confidence 6788889888776 456788888887654446789999999999999998643 68999999999999999999976
Q ss_pred cccCCCCEEEEEcccccccccCC---------------CceeEEEECCCCC
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNYK---------------KLFNIIVANPPYI 481 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~~---------------~~fD~Iv~NPPy~ 481 (570)
+. .+++|+++|+.+.++... .+||+|++|||+.
T Consensus 259 g~---~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~ 306 (369)
T 3bt7_A 259 HI---DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS 306 (369)
T ss_dssp TC---CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred CC---CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc
Confidence 32 369999999976543211 2799999999975
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-12 Score=123.62 Aligned_cols=128 Identities=16% Similarity=0.074 Sum_probs=93.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~~~~fD~ 473 (570)
.++.+|||+|||||.++..++...+ ..+|+|+|+|+.|++.+.++++. ..++.++.+|+.... ....++||+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~-----~~~v~~~~~d~~~~~~~~~~~~~fD~ 129 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-----RNNIIPLLFDASKPWKYSGIVEKVDL 129 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-----CSSEEEECSCTTCGGGTTTTCCCEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhc-----CCCeEEEEcCCCCchhhcccccceeE
Confidence 5678999999999999999998875 57999999999999877777664 235889999986531 112378999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------CCHHHHH----HH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------NQSNLVR----KL 543 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~l~----~l 543 (570)
|++|.+.. .....++.++.++|||||++++.+.. ...+.+. +.
T Consensus 130 V~~~~~~~---------------------------~~~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 182 (210)
T 1nt2_A 130 IYQDIAQK---------------------------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLKE 182 (210)
T ss_dssp EEECCCST---------------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHHH
T ss_pred EEEeccCh---------------------------hHHHHHHHHHHHHhCCCCEEEEEEecCCccccCCHHHHHHHHHHH
Confidence 99984211 12245688999999999999987521 1223332 23
Q ss_pred HHHCCCeeEEEEec
Q psy2395 544 LFKYGFSDIKSWRD 557 (570)
Q Consensus 544 l~~~Gf~~i~~~~D 557 (570)
++++ |..++....
T Consensus 183 l~~~-f~~~~~~~~ 195 (210)
T 1nt2_A 183 MEGD-FKIVKHGSL 195 (210)
T ss_dssp HHTT-SEEEEEEEC
T ss_pred HHhh-cEEeeeecC
Confidence 7777 998877653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=138.58 Aligned_cols=148 Identities=16% Similarity=0.288 Sum_probs=100.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc----------------------------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK---------------------------- 448 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~---------------------------- 448 (570)
++.+|||+|||+|.+++.++..++ ..+|+|+|+|+.+++.|++++...+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 578999999999999999999875 579999999999999999987643211
Q ss_pred ---------------------------CCCCEEEEEccccccc----ccCCCceeEEEECCCCCCCCCcccCCCCccccc
Q psy2395 449 ---------------------------YNIPIKFIKSNWYNNL----QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEP 497 (570)
Q Consensus 449 ---------------------------~~~~v~~~~~D~~~~l----~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep 497 (570)
...+++|+++|+.... +...++||+|+|+.... |
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~-------------~-- 189 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTK-------------W-- 189 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHH-------------H--
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHH-------------H--
Confidence 0146999999997533 12347899999954310 0
Q ss_pred cccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC----------------------CHHHHHHHHHH--CCCeeEE
Q psy2395 498 INALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN----------------------QSNLVRKLLFK--YGFSDIK 553 (570)
Q Consensus 498 ~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------~~~~l~~ll~~--~Gf~~i~ 553 (570)
+.-..+.+....+++.+.++|+|||+|+++.... ..+.+..+|.+ +||+.++
T Consensus 190 ----ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~ 265 (292)
T 3g07_A 190 ----VHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYE 265 (292)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEE
T ss_pred ----hhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEE
Confidence 0000012356789999999999999999874321 13457778888 8998887
Q ss_pred EEec----CCCCceE
Q psy2395 554 SWRD----LSGIERV 564 (570)
Q Consensus 554 ~~~D----~~g~~R~ 564 (570)
+... ..|..|.
T Consensus 266 ~~~~~~~~~~g~~r~ 280 (292)
T 3g07_A 266 LVATPHNTSKGFQRP 280 (292)
T ss_dssp EC-----------CC
T ss_pred EeccCCCCCCCccce
Confidence 7654 3455553
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-13 Score=127.70 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=101.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++. .++.++++|+.+. +.. ++||+|++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~-~~~-~~fD~v~~ 112 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSF-EVP-TSIDTIVS 112 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSC-CCC-SCCSEEEE
T ss_pred CCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhc-CCC-CCeEEEEE
Confidence 6779999999999999999976 3699999999999999998764 3488999999763 333 78999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC---------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN--------------------- 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------------- 535 (570)
+..+...++ .....+++.+.+.|+|||.+++..+..
T Consensus 113 ~~~l~~~~~-----------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (220)
T 3hnr_A 113 TYAFHHLTD-----------------------DEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQL 169 (220)
T ss_dssp ESCGGGSCH-----------------------HHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHH
T ss_pred CcchhcCCh-----------------------HHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccc
Confidence 754332110 112348899999999999999874321
Q ss_pred ----------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 536 ----------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 536 ----------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+.+.++++++||.++.+.. .+..-++.++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~--~~~~w~~~~~~ 211 (220)
T 3hnr_A 170 ANDLQTEYYTRIPVMQTIFENNGFHVTFTRL--NHFVWVMEATK 211 (220)
T ss_dssp HHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC--SSSEEEEEEEE
T ss_pred hhhcchhhcCCHHHHHHHHHHCCCEEEEeec--cceEEEEeehh
Confidence 246788999999998765543 35555555544
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.45 E-value=9.8e-13 Score=132.41 Aligned_cols=150 Identities=15% Similarity=0.169 Sum_probs=105.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc-CCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+.+.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|++|+...... ...+++++.+|+.+.+....++||+|
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I 152 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence 4568999999999999999987643 579999999999999999997542111 23579999999987665445789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCH---HHHHHHHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQS---NLVRKLLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~---~~l~~ll~~~Gf 549 (570)
++|+|+..... ..+ ....+++.+.+.|+|||++++..+. ... ..+.+.+++. |
T Consensus 153 i~d~~~~~~~~-------------~~l--------~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~-F 210 (275)
T 1iy9_A 153 MVDSTEPVGPA-------------VNL--------FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI-F 210 (275)
T ss_dssp EESCSSCCSCC-------------CCC--------STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-C
T ss_pred EECCCCCCCcc-------------hhh--------hHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh-C
Confidence 99987632110 001 1156788888999999999987643 233 3344555554 7
Q ss_pred eeEEEEec----C-CCCceEEEEE
Q psy2395 550 SDIKSWRD----L-SGIERVTQGK 568 (570)
Q Consensus 550 ~~i~~~~D----~-~g~~R~~~~~ 568 (570)
..+..+.- + .|..-++++.
T Consensus 211 ~~v~~~~~~vp~~~~g~w~~~~as 234 (275)
T 1iy9_A 211 PITKLYTANIPTYPSGLWTFTIGS 234 (275)
T ss_dssp SEEEEEEECCTTSGGGCEEEEEEE
T ss_pred CCeEEEEEecCcccCcceEEEEee
Confidence 77766542 1 3455566665
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.45 E-value=9.5e-13 Score=127.12 Aligned_cols=132 Identities=14% Similarity=0.102 Sum_probs=95.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC--CCCEEEEEcccccccccCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY--NIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~--~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
.++.+|||+|||+|.++..++..++ ..+|+|+|+|+.+++.|++++..++... ..+++++++|+.. .+...++||+
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~ 105 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVY-RDKRFSGYDA 105 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSS-CCGGGTTCSE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccc-cccccCCCCE
Confidence 3577999999999999999998764 4799999999999999999987542110 1169999999844 3333478999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------------------
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------------------- 534 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------------------- 534 (570)
|+++-.+...+ ......+++.+.+.|+|||.++.....
T Consensus 106 V~~~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T 3jwg_A 106 ATVIEVIEHLD-----------------------ENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDH 162 (219)
T ss_dssp EEEESCGGGCC-----------------------HHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCC
T ss_pred EEEHHHHHhCC-----------------------HHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCc
Confidence 99964332111 123468999999999999976654321
Q ss_pred ---CCHHHHH----HHHHHCCCeeE
Q psy2395 535 ---NQSNLVR----KLLFKYGFSDI 552 (570)
Q Consensus 535 ---~~~~~l~----~ll~~~Gf~~i 552 (570)
...+++. .++.++||.+.
T Consensus 163 ~~~~~~~~l~~~~~~l~~~~Gf~v~ 187 (219)
T 3jwg_A 163 RFEWTRKEFQTWAVKVAEKYGYSVR 187 (219)
T ss_dssp TTSBCHHHHHHHHHHHHHHHTEEEE
T ss_pred eeeecHHHHHHHHHHHHHHCCcEEE
Confidence 0344555 77888999653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.9e-13 Score=129.44 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=100.2
Q ss_pred cccCeeeeecCCccccchhHHHH-HHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcC----CCcEEEEEeCCHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELL-VDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSK----NKIEIIATDISKFALKIA 438 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l-~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~----~~~~V~gvDis~~al~~A 438 (570)
.|++..+.+..+..++.|..... ++.+.. ...++.+|||+|||+|.++..+++... +..+|+|+|+++.+++.|
T Consensus 47 ~y~d~~~~~~~~~~~~~p~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a 125 (227)
T 2pbf_A 47 PYIDTPVYISHGVTISAPHMHALSLKRLIN-VLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFS 125 (227)
T ss_dssp TTSSSCEEEETTEEECCHHHHHHHHHHHTT-TSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHH
T ss_pred cCCCCccccCCCCccCChHHHHHHHHHHHh-hCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHH
Confidence 45566666677777777654433 333321 235678999999999999999998763 346999999999999999
Q ss_pred HHHHHhhccc--CCCCEEEEEcccccccc---cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHH
Q psy2395 439 KKNAKKKLTK--YNIPIKFIKSNWYNNLQ---NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKE 513 (570)
Q Consensus 439 ~~n~~~~~~~--~~~~v~~~~~D~~~~l~---~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~ 513 (570)
++|+..++.. ...+++++++|+.+..+ ...++||+|++++++..
T Consensus 126 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~~------------------------------- 174 (227)
T 2pbf_A 126 LENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKELGLFDAIHVGASASE------------------------------- 174 (227)
T ss_dssp HHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHHHCCEEEEEECSBBSS-------------------------------
T ss_pred HHHHHHcCccccccCCEEEEECChHhcccccCccCCCcCEEEECCchHH-------------------------------
Confidence 9999864210 02469999999977431 12368999999876431
Q ss_pred HHHHHhhccccCeEEEEEEcC
Q psy2395 514 IVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 514 ~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+++.+.+.|+|||++++.++.
T Consensus 175 ~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 175 LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CCHHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCcEEEEEEcc
Confidence 124667799999999998765
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.7e-13 Score=145.82 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=110.0
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcC------------CCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSK------------NKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~------------~~~~V~gvDis~~al~~A~~n~~ 443 (570)
+|+|++..+.+++.+. +.++.+|||+|||||.+++.+++... ...+++|+|+++.+++.|+.|+.
T Consensus 153 fyTP~~v~~~mv~~l~---~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~ 229 (445)
T 2okc_A 153 YFTPRPLIQAMVDCIN---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY 229 (445)
T ss_dssp GCCCHHHHHHHHHHHC---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHhC---CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence 4678888888777652 34567999999999999999886531 13579999999999999999998
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.++... .++.+.++|.+..... .+||+|++||||......... ..+.+. .. . .+ .....+++.+.++|+
T Consensus 230 l~g~~~-~~~~i~~gD~l~~~~~--~~fD~Iv~NPPf~~~~~~~~~--~~~~~~--~~-~--~~-~~~~~fl~~~~~~Lk 298 (445)
T 2okc_A 230 LHGIGT-DRSPIVCEDSLEKEPS--TLVDVILANPPFGTRPAGSVD--INRPDF--YV-E--TK-NNQLNFLQHMMLMLK 298 (445)
T ss_dssp HTTCCS-SCCSEEECCTTTSCCS--SCEEEEEECCCSSCCCTTCCC--CCCTTS--SS-C--CS-CHHHHHHHHHHHHEE
T ss_pred HhCCCc-CCCCEeeCCCCCCccc--CCcCEEEECCCCCCcccccch--hhHhhc--CC-C--Cc-chHHHHHHHHHHHhc
Confidence 653210 1578999998764332 589999999999865432110 001000 01 1 11 123477888889999
Q ss_pred cCeEEEEEEcCC------CHHHHHHHH-HHCCCeeE
Q psy2395 524 KNGLLLIEHGYN------QSNLVRKLL-FKYGFSDI 552 (570)
Q Consensus 524 pgG~l~~~~~~~------~~~~l~~ll-~~~Gf~~i 552 (570)
|||+++++++.. ....+++.+ +..++..+
T Consensus 299 ~gG~~a~V~p~~~L~~~~~~~~iR~~L~~~~~l~~i 334 (445)
T 2okc_A 299 TGGRAAVVLPDNVLFEAGAGETIRKRLLQDFNLHTI 334 (445)
T ss_dssp EEEEEEEEEEHHHHHCSTHHHHHHHHHHHHEEEEEE
T ss_pred cCCEEEEEECCcccccCcHHHHHHHHHHhcCcEEEE
Confidence 999999887542 345677644 44444433
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=130.80 Aligned_cols=140 Identities=16% Similarity=0.225 Sum_probs=104.7
Q ss_pred HHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
.+++.++..+ ..++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ ...+++++.+|+.+
T Consensus 51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvd~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~- 125 (287)
T 1kpg_A 51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQ- 125 (287)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGG-
T ss_pred HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcC--CCCCeEEEECChhh-
Confidence 3445555443 2467799999999999999999665 3599999999999999999987532 23469999999854
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------- 534 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------- 534 (570)
++ ++||+|+++..+...+ ......+++.+.++|+|||++++....
T Consensus 126 ~~---~~fD~v~~~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 179 (287)
T 1kpg_A 126 FD---EPVDRIVSIGAFEHFG-----------------------HERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHE 179 (287)
T ss_dssp CC---CCCSEEEEESCGGGTC-----------------------TTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTT
T ss_pred CC---CCeeEEEEeCchhhcC-----------------------hHHHHHHHHHHHHhcCCCCEEEEEEecCCCcccccc
Confidence 33 7899999964332110 023478899999999999999884321
Q ss_pred --------------------------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 --------------------------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 --------------------------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
...+.+.+++.++||..+.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 226 (287)
T 1kpg_A 180 RGLPMSFTFARFLKFIVTEIFPGGRLPSIPMVQECASANGFTVTRVQ 226 (287)
T ss_dssp TTCSCHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHTTTCEEEEEE
T ss_pred ccccccccccchhhhHHheeCCCCCCCCHHHHHHHHHhCCcEEEEEE
Confidence 135677888999999988765
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.5e-13 Score=132.72 Aligned_cols=121 Identities=16% Similarity=0.186 Sum_probs=95.0
Q ss_pred chhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
.+....++..+... .++.+|||+|||+|+.++.+++..+++.+|+++|+|+.+++.|++|+...+ ...+++++++|
T Consensus 64 ~~~~~~ll~~l~~~--~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g--~~~~i~~~~gd 139 (247)
T 1sui_A 64 SADEGQFLSMLLKL--INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGP 139 (247)
T ss_dssp CHHHHHHHHHHHHH--TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESC
T ss_pred CHHHHHHHHHHHHh--hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCeEEEECC
Confidence 35556666665553 256799999999999999999987656899999999999999999998743 23469999999
Q ss_pred cccccccC------CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 460 WYNNLQNY------KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 460 ~~~~l~~~------~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+.+.++.. .++||+|+++.+. ..+..+++.+.++|+|||++++..
T Consensus 140 a~~~l~~l~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 140 ALPVLDEMIKDEKNHGSYDFIFVDADK----------------------------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp HHHHHHHHHHSGGGTTCBSEEEECSCS----------------------------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred HHHHHHHHHhccCCCCCEEEEEEcCch----------------------------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 97754432 4789999997531 134678888999999999998753
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=9.6e-13 Score=129.13 Aligned_cols=93 Identities=19% Similarity=0.236 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
...+...+... .++.+|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|++|+..++ ...+++++++|+.+
T Consensus 66 ~~~l~~~~~~~--~~~~~vLD~gcG~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~ 138 (241)
T 3gdh_A 66 AEHIAGRVSQS--FKCDVVVDAFCGVGGNTIQFALTG---MRVIAIDIDPVKIALARNNAEVYG--IADKIEFICGDFLL 138 (241)
T ss_dssp HHHHHHHHHHH--SCCSEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHH
T ss_pred HHHHHHHhhhc--cCCCEEEECccccCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHcC--CCcCeEEEECChHH
Confidence 45555555433 257899999999999999999764 799999999999999999998742 12369999999977
Q ss_pred ccccCCCceeEEEECCCCCCCC
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKG 484 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~ 484 (570)
..+ .++||+|++||||....
T Consensus 139 ~~~--~~~~D~v~~~~~~~~~~ 158 (241)
T 3gdh_A 139 LAS--FLKADVVFLSPPWGGPD 158 (241)
T ss_dssp HGG--GCCCSEEEECCCCSSGG
T ss_pred hcc--cCCCCEEEECCCcCCcc
Confidence 543 37899999999998644
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-13 Score=131.38 Aligned_cols=124 Identities=18% Similarity=0.189 Sum_probs=96.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-ccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~~~~~fD~I 474 (570)
+++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++ +.++++|+.+.+ +..+++||+|
T Consensus 40 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~-----------~~~~~~d~~~~~~~~~~~~fD~i 105 (240)
T 3dli_A 40 KGCRRVLDIGCGRGEFLELCKEEG---IESIGVDINEDMIKFCEGK-----------FNVVKSDAIEYLKSLPDKYLDGV 105 (240)
T ss_dssp TTCSCEEEETCTTTHHHHHHHHHT---CCEEEECSCHHHHHHHHTT-----------SEEECSCHHHHHHTSCTTCBSEE
T ss_pred cCCCeEEEEeCCCCHHHHHHHhCC---CcEEEEECCHHHHHHHHhh-----------cceeeccHHHHhhhcCCCCeeEE
Confidence 466899999999999999998764 5799999999999988755 568889987643 3335799999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-------------------
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN------------------- 535 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~------------------- 535 (570)
+++-.+...+ ...+..+++.+.++|+|||++++.++..
T Consensus 106 ~~~~~l~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (240)
T 3dli_A 106 MISHFVEHLD-----------------------PERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPV 162 (240)
T ss_dssp EEESCGGGSC-----------------------GGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCC
T ss_pred EECCchhhCC-----------------------cHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccC
Confidence 9964322110 1235789999999999999999876432
Q ss_pred CHHHHHHHHHHCCCeeEEEEe
Q psy2395 536 QSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 536 ~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
....+..++.++||..+.+..
T Consensus 163 ~~~~l~~~l~~aGf~~~~~~~ 183 (240)
T 3dli_A 163 HPETLKFILEYLGFRDVKIEF 183 (240)
T ss_dssp CHHHHHHHHHHHTCEEEEEEE
T ss_pred CHHHHHHHHHHCCCeEEEEEE
Confidence 246789999999999877654
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.5e-13 Score=132.54 Aligned_cols=134 Identities=16% Similarity=0.112 Sum_probs=98.1
Q ss_pred hhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCc
Q psy2395 392 KKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKL 470 (570)
Q Consensus 392 ~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~ 470 (570)
.....++.+|||||||+|..+..+++.. ..+|+|||+||.+++.|++++.. .+.++.++.+|+..... ..+++
T Consensus 55 ~~~~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~----~~~~~~~~~~~a~~~~~~~~~~~ 128 (236)
T 3orh_A 55 AAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPR----QTHKVIPLKGLWEDVAPTLPDGH 128 (236)
T ss_dssp HHHTTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGG----CSSEEEEEESCHHHHGGGSCTTC
T ss_pred HhhccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhh----CCCceEEEeehHHhhcccccccC
Confidence 3334678899999999999999998765 36899999999999999999875 45678999999865432 33478
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc----------CCC----
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG----------YNQ---- 536 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~----------~~~---- 536 (570)
||.|+.++...... .........+++++.++|||||+|++... +..
T Consensus 129 FD~i~~D~~~~~~~--------------------~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~~~~~~~~~~~~~~~~ 188 (236)
T 3orh_A 129 FDGILYDTYPLSEE--------------------TWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDITIM 188 (236)
T ss_dssp EEEEEECCCCCBGG--------------------GTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCHHHH
T ss_pred CceEEEeeeecccc--------------------hhhhcchhhhhhhhhheeCCCCEEEEEecCCchhhhhhhhhhhhhh
Confidence 99999986432111 01223567899999999999999987320 111
Q ss_pred -HHHHHHHHHHCCCee
Q psy2395 537 -SNLVRKLLFKYGFSD 551 (570)
Q Consensus 537 -~~~l~~ll~~~Gf~~ 551 (570)
.+.....|.++||..
T Consensus 189 ~~~~~~~~L~eaGF~~ 204 (236)
T 3orh_A 189 FEETQVPALLEAGFRR 204 (236)
T ss_dssp HHHHTHHHHHHHTCCG
T ss_pred hHHHHHHHHHHcCCeE
Confidence 233455677889975
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.2e-13 Score=129.12 Aligned_cols=121 Identities=17% Similarity=0.161 Sum_probs=94.3
Q ss_pred ccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE
Q psy2395 378 IPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK 457 (570)
Q Consensus 378 ~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~ 457 (570)
++.+....++..++.. .++.+|||+|||+|..+..+++..+ +.+|+++|+|+.+++.|++++..++ ...++.+++
T Consensus 37 ~~~~~~~~~l~~~~~~--~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~ 111 (233)
T 2gpy_A 37 IMDLLGMESLLHLLKM--AAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALG--LESRIELLF 111 (233)
T ss_dssp CCCHHHHHHHHHHHHH--HCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTT--CTTTEEEEC
T ss_pred CcCHHHHHHHHHHHhc--cCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEE
Confidence 3445555444444432 2567999999999999999999875 5899999999999999999998743 234699999
Q ss_pred cccccccccC--CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 458 SNWYNNLQNY--KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 458 ~D~~~~l~~~--~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+|+.+.++.. .++||+|++++|.. .+..+++.+.+.|+|||++++.
T Consensus 112 ~d~~~~~~~~~~~~~fD~I~~~~~~~----------------------------~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 112 GDALQLGEKLELYPLFDVLFIDAAKG----------------------------QYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp SCGGGSHHHHTTSCCEEEEEEEGGGS----------------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCHHHHHHhcccCCCccEEEECCCHH----------------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 9997754433 46899999986531 2468889999999999999885
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-13 Score=135.92 Aligned_cols=119 Identities=21% Similarity=0.293 Sum_probs=93.8
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
+....++..+... .++.+|||+|||+|..++.+|+..+++++|+|+|+|+.+++.|++|+..++ ...+++++++|+
T Consensus 46 ~~~~~~l~~l~~~--~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda 121 (242)
T 3r3h_A 46 PEQAQFMQMLIRL--TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK--QEHKIKLRLGPA 121 (242)
T ss_dssp HHHHHHHHHHHHH--HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTT--CTTTEEEEESCH
T ss_pred HHHHHHHHHHHhh--cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCH
Confidence 4445555555443 256799999999999999999887656899999999999999999998753 334799999999
Q ss_pred ccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.++.. .++||+|+++.+. ..+..+++.+.++|+|||++++.
T Consensus 122 ~~~l~~~~~~~~~~~fD~V~~d~~~----------------------------~~~~~~l~~~~~~LkpGG~lv~d 169 (242)
T 3r3h_A 122 LDTLHSLLNEGGEHQFDFIFIDADK----------------------------TNYLNYYELALKLVTPKGLIAID 169 (242)
T ss_dssp HHHHHHHHHHHCSSCEEEEEEESCG----------------------------GGHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhccCCCCEeEEEEcCCh----------------------------HHhHHHHHHHHHhcCCCeEEEEE
Confidence 7755432 3789999997641 23467888999999999999884
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-13 Score=129.58 Aligned_cols=136 Identities=12% Similarity=0.096 Sum_probs=95.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---cCCCCEEEEEcccccccc--cCCCc
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYNIPIKFIKSNWYNNLQ--NYKKL 470 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---~~~~~v~~~~~D~~~~l~--~~~~~ 470 (570)
.++.+|||||||+|.+++.+|...+ +..|+|+|+|+.+++.|++++..... ....++.++++|+.+.++ ...++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred CCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3566899999999999999998875 58999999999999999998764210 012369999999976444 33578
Q ss_pred eeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHC
Q psy2395 471 FNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKY 547 (570)
Q Consensus 471 fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~ 547 (570)
||.|+++.| +.... +.. ..-....+++.+.++|+|||.+++.+... ....+.+.+...
T Consensus 124 ~D~v~~~~~dp~~k~~----------h~k---------rr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~~~~~~~l~~~ 184 (235)
T 3ckk_A 124 LTKMFFLFPDPHFKRT----------KHK---------WRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEH 184 (235)
T ss_dssp EEEEEEESCC------------------------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHTS
T ss_pred eeEEEEeCCCchhhhh----------hhh---------hhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 999998743 21100 000 00012578999999999999999887653 345566667777
Q ss_pred C-Cee
Q psy2395 548 G-FSD 551 (570)
Q Consensus 548 G-f~~ 551 (570)
| |..
T Consensus 185 ~~f~~ 189 (235)
T 3ckk_A 185 PLFER 189 (235)
T ss_dssp TTEEE
T ss_pred CCccc
Confidence 6 543
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=147.97 Aligned_cols=161 Identities=14% Similarity=0.125 Sum_probs=111.4
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC-----------------CcEEEEEeCCHHHHH
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN-----------------KIEIIATDISKFALK 436 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~-----------------~~~V~gvDis~~al~ 436 (570)
..+|+|++....|++.+. +.++.+|+|+|||||.+++.+++.... ...++|+|+++.++.
T Consensus 149 G~fyTP~~iv~~mv~~l~---p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~ 225 (541)
T 2ar0_A 149 GQYFTPRPLIKTIIHLLK---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 225 (541)
T ss_dssp -CCCCCHHHHHHHHHHHC---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred CeeeCCHHHHHHHHHHhc---cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence 457889988888887662 345679999999999999988865311 137999999999999
Q ss_pred HHHHHHHhhcccCC--CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHH
Q psy2395 437 IAKKNAKKKLTKYN--IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEI 514 (570)
Q Consensus 437 ~A~~n~~~~~~~~~--~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~ 514 (570)
.|+.|+..++.... .++.+.++|.+........+||+|++||||....... .. ..|. ...+ .....+
T Consensus 226 lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~-~~--~~~~-------~~~~-~~~~~F 294 (541)
T 2ar0_A 226 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN-IT--RTFV-------HPTS-NKQLCF 294 (541)
T ss_dssp HHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCC-CC--SCCS-------SCCS-CHHHHH
T ss_pred HHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchh-hH--hhcC-------CCCC-chHHHH
Confidence 99999986432110 1277899998764333346899999999998654332 00 0111 0111 123478
Q ss_pred HHHHhhccccCeEEEEEEcCC------CHHHHHHHHHHCC
Q psy2395 515 VKNASKYLVKNGLLLIEHGYN------QSNLVRKLLFKYG 548 (570)
Q Consensus 515 l~~~~~~LkpgG~l~~~~~~~------~~~~l~~ll~~~G 548 (570)
+..+.++|+|||+++++++.. ....+++.|.+.+
T Consensus 295 l~~~l~~Lk~gGr~a~V~p~~~L~~~~~~~~iR~~L~~~~ 334 (541)
T 2ar0_A 295 MQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 334 (541)
T ss_dssp HHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred HHHHHHHhCCCCEEEEEecCcceecCcHHHHHHHHHhhcC
Confidence 888899999999999887642 2456777776644
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=123.60 Aligned_cols=123 Identities=21% Similarity=0.187 Sum_probs=96.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++ +|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++..+ +.++.++++|+.+. +..+++||+|++
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~-~~~~~~fD~v~~ 100 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEK----GVKITTVQSNLADF-DIVADAWEGIVS 100 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHH----TCCEEEECCBTTTB-SCCTTTCSEEEE
T ss_pred CC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhc----CCceEEEEcChhhc-CCCcCCccEEEE
Confidence 45 9999999999999999865 369999999999999999998763 34799999999663 333478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-----------------CCHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-----------------NQSNL 539 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-----------------~~~~~ 539 (570)
+..+.+ ......+++.+.+.|+|||.+++.... ...++
T Consensus 101 ~~~~~~-------------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (202)
T 2kw5_A 101 IFCHLP-------------------------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLET 155 (202)
T ss_dssp ECCCCC-------------------------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHH
T ss_pred EhhcCC-------------------------HHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHH
Confidence 643221 134578999999999999999986521 23567
Q ss_pred HHHHHHHCCCeeEEEE
Q psy2395 540 VRKLLFKYGFSDIKSW 555 (570)
Q Consensus 540 l~~ll~~~Gf~~i~~~ 555 (570)
+.+++. ||.++.+.
T Consensus 156 l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 156 LQSELP--SLNWLIAN 169 (202)
T ss_dssp HHHHCS--SSCEEEEE
T ss_pred HHHHhc--CceEEEEE
Confidence 888887 99987644
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.3e-13 Score=128.95 Aligned_cols=137 Identities=17% Similarity=0.115 Sum_probs=95.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCC-HHHHHHH---HHHHHhhcccCCCCEEEEEcccccccccCCCc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDIS-KFALKIA---KKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis-~~al~~A---~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~ 470 (570)
..++.+|||+|||+|.++..+++..+ +.+|+|+|+| +.+++.| ++++...+ -.++.|+++|+.+......+.
T Consensus 22 ~~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~---~~~v~~~~~d~~~l~~~~~d~ 97 (225)
T 3p2e_A 22 GQFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGG---LSNVVFVIAAAESLPFELKNI 97 (225)
T ss_dssp TTCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTC---CSSEEEECCBTTBCCGGGTTC
T ss_pred CCCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcC---CCCeEEEEcCHHHhhhhccCe
Confidence 34677999999999999999997655 6899999999 6666666 77766531 236999999996542222367
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC---------------
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN--------------- 535 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------- 535 (570)
+|.|++|+|+.... + .. ......++.++.++|||||.+++.+...
T Consensus 98 v~~i~~~~~~~~~~-----------~---~~------~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~ 157 (225)
T 3p2e_A 98 ADSISILFPWGTLL-----------E---YV------IKPNRDILSNVADLAKKEAHFEFVTTYSDSYEEAEIKKRGLPL 157 (225)
T ss_dssp EEEEEEESCCHHHH-----------H---HH------HTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------
T ss_pred EEEEEEeCCCcHHh-----------h---hh------hcchHHHHHHHHHhcCCCcEEEEEEeccccchhchhhhcCCCC
Confidence 99999998853200 0 00 0012467899999999999998832111
Q ss_pred -CHH-----HHHHHHHHCCCeeEEEE
Q psy2395 536 -QSN-----LVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 -~~~-----~l~~ll~~~Gf~~i~~~ 555 (570)
... ++...+.++||.++.+.
T Consensus 158 ~~~~~~~~~el~~~l~~aGf~v~~~~ 183 (225)
T 3p2e_A 158 LSKAYFLSEQYKAELSNSGFRIDDVK 183 (225)
T ss_dssp CCHHHHHSHHHHHHHHHHTCEEEEEE
T ss_pred CChhhcchHHHHHHHHHcCCCeeeee
Confidence 111 37778889999876543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.2e-13 Score=131.50 Aligned_cols=138 Identities=16% Similarity=0.124 Sum_probs=97.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC--------------------------
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY-------------------------- 449 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~-------------------------- 449 (570)
.++.+|||+|||+|.+++.++..+ ..+|+|+|+|+.|++.|++++..+....
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 356799999999998887766543 2479999999999999999876421000
Q ss_pred CCCEE-EEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 450 NIPIK-FIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 450 ~~~v~-~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
..++. ++++|+.+..+. ..++||+|+++--++. -....+.+..+++++.++||||
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~---------------------i~~~~~~~~~~l~~i~r~LKPG 190 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC---------------------ACCSLDAYRAALCNLASLLKPG 190 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH---------------------HCSSHHHHHHHHHHHHTTEEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHH---------------------hcCCHHHHHHHHHHHHHHcCCC
Confidence 01244 899999774331 1368999999632110 0011245678999999999999
Q ss_pred eEEEEEEc--C--------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 526 GLLLIEHG--Y--------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 526 G~l~~~~~--~--------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
|+|++... . ...+.+.++|.++||..+.+..
T Consensus 191 G~li~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 191 GHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp EEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEEeecCccceeCCeEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 99988531 1 2467899999999999877654
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.4e-12 Score=127.64 Aligned_cols=127 Identities=12% Similarity=0.158 Sum_probs=99.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|+++... .++.++++|+.+ ++...++||+|+
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~-~~~~~~~fD~v~ 112 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHG--ASYVLGLDLSEKMLARARAAGPD------TGITYERADLDK-LHLPQDSFDLAY 112 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGG-CCCCTTCEEEEE
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCC--CCeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhh-ccCCCCCceEEE
Confidence 357799999999999999999764 23999999999999999987642 258999999965 333357899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++.++...+ ....+++.+.+.|+|||.+++..+.
T Consensus 113 ~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (243)
T 3bkw_A 113 SSLALHYVE-------------------------DVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTW 167 (243)
T ss_dssp EESCGGGCS-------------------------CHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEE
T ss_pred Eeccccccc-------------------------hHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEE
Confidence 975533111 2368899999999999999885421
Q ss_pred ------------------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 ------------------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 ------------------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
...+.+.++|.++||..+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~~ 213 (243)
T 3bkw_A 168 PIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVEE 213 (243)
T ss_dssp EECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEEE
T ss_pred eecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeecc
Confidence 1357788999999999988764
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-12 Score=136.19 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=92.6
Q ss_pred chhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCC-------------------------------------
Q psy2395 380 RPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKN------------------------------------- 421 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~------------------------------------- 421 (570)
.|..+.+...++.... .++..|+|++||||.+++.+|.....
T Consensus 176 Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 255 (384)
T 3ldg_A 176 APIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDI 255 (384)
T ss_dssp CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccC
Confidence 3444556665554422 45678999999999999998876531
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccc
Q psy2395 422 KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501 (570)
Q Consensus 422 ~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al 501 (570)
..+|+|+|+|+.|++.|++|+..++ ....++|.++|+.+... ..+||+|++||||...-..
T Consensus 256 ~~~v~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~l~~--~~~fD~Iv~NPPYG~rl~~--------------- 316 (384)
T 3ldg_A 256 QLDISGFDFDGRMVEIARKNAREVG--LEDVVKLKQMRLQDFKT--NKINGVLISNPPYGERLLD--------------- 316 (384)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEECCGGGCCC--CCCSCEEEECCCCTTTTSC---------------
T ss_pred CceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHHCCc--cCCcCEEEECCchhhccCC---------------
Confidence 1469999999999999999999753 33469999999977433 2589999999999743110
Q ss_pred cccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH
Q psy2395 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS 537 (570)
Q Consensus 502 ~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 537 (570)
..+-..+|..+.+.+.. -+||.+++.++....
T Consensus 317 --~~~l~~ly~~lg~~lk~--~~g~~~~iit~~~~l 348 (384)
T 3ldg_A 317 --DKAVDILYNEMGETFAP--LKTWSQFILTNDTDF 348 (384)
T ss_dssp --HHHHHHHHHHHHHHHTT--CTTSEEEEEESCTTH
T ss_pred --HHHHHHHHHHHHHHHhh--CCCcEEEEEECCHHH
Confidence 00001233433333322 359999998886553
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-12 Score=123.42 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=108.3
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..+.+.+.... .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++.. ++.++++|+.+.
T Consensus 28 ~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~--------~~~~~~~d~~~~ 95 (239)
T 3bxo_A 28 SDIADLVRSRT-PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRLP--------DATLHQGDMRDF 95 (239)
T ss_dssp HHHHHHHHHHC-TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHCT--------TCEEEECCTTTC
T ss_pred HHHHHHHHHhc-CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhCC--------CCEEEECCHHHc
Confidence 34445554433 567899999999999999999876 389999999999999988742 378999999663
Q ss_pred cccCCCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc---------
Q psy2395 464 LQNYKKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG--------- 533 (570)
Q Consensus 464 l~~~~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~--------- 533 (570)
+. .++||+|+|.. .+. | -...+....+++.+.+.|+|||.+++...
T Consensus 96 -~~-~~~~D~v~~~~~~~~-------------~---------~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 151 (239)
T 3bxo_A 96 -RL-GRKFSAVVSMFSSVG-------------Y---------LKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADG 151 (239)
T ss_dssp -CC-SSCEEEEEECTTGGG-------------G---------CCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTT
T ss_pred -cc-CCCCcEEEEcCchHh-------------h---------cCCHHHHHHHHHHHHHhcCCCeEEEEEeccCccccccc
Confidence 32 47899999621 111 0 00113457899999999999999988421
Q ss_pred ----------------------------------------------------CCCHHHHHHHHHHCCCeeEEEEecCCCC
Q psy2395 534 ----------------------------------------------------YNQSNLVRKLLFKYGFSDIKSWRDLSGI 561 (570)
Q Consensus 534 ----------------------------------------------------~~~~~~l~~ll~~~Gf~~i~~~~D~~g~ 561 (570)
....+++.++|+++||.++.+..+ .+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~-~~~ 230 (239)
T 3bxo_A 152 WVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGG-PSG 230 (239)
T ss_dssp CEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESST-TTS
T ss_pred ceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcC-CCC
Confidence 012478999999999976655444 445
Q ss_pred ceEEEEEeC
Q psy2395 562 ERVTQGKIS 570 (570)
Q Consensus 562 ~R~~~~~~~ 570 (570)
.-+++|+++
T Consensus 231 ~~~~va~K~ 239 (239)
T 3bxo_A 231 RGLFVGVPA 239 (239)
T ss_dssp SCEEEEEEC
T ss_pred ceEEEEecC
Confidence 567777763
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=131.65 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=84.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc-CCCCEEEEEcccccccc--cCCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK-YNIPIKFIKSNWYNNLQ--NYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~-~~~~v~~~~~D~~~~l~--~~~~~fD 472 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...... ...++.+..+|+.+... ...++||
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 56 HGCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp TTCCEEEETTCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 356799999999999999999764 59999999999999999987542110 11258899999865320 2347899
Q ss_pred EEEEC-CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 473 IIVAN-PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 473 ~Iv~N-PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+|+++ ..+....+ .....+....+++.+.++|+|||++++.+
T Consensus 133 ~V~~~g~~l~~~~~------------------~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 175 (293)
T 3thr_A 133 AVICLGNSFAHLPD------------------SKGDQSEHRLALKNIASMVRPGGLLVIDH 175 (293)
T ss_dssp EEEECTTCGGGSCC------------------SSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEcChHHhhcCc------------------cccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 99996 33321110 00112456889999999999999999754
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-13 Score=128.77 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=95.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC-CCEEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN-IPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~-~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..++.+|||+|||+|.++..++..++ +.+|+|+|+|+.|++.+.+++..+....+ .++.++++|+.+ ++...+. |.
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~-l~~~~~~-d~ 101 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAER-LPPLSGV-GE 101 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTT-CCSCCCE-EE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhh-CCCCCCC-CE
Confidence 34678999999999999999999875 68999999999998865444432111122 269999999966 4443455 88
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC---------------C--
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN---------------Q-- 536 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~-- 536 (570)
|+...||..... .+ +.....+++++.++|||||.+++.++.. .
T Consensus 102 v~~~~~~~~~~~--------~~------------~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (218)
T 3mq2_A 102 LHVLMPWGSLLR--------GV------------LGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVPEVGEHPEPTPD 161 (218)
T ss_dssp EEEESCCHHHHH--------HH------------HTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCGGGTTCCCCCHH
T ss_pred EEEEccchhhhh--------hh------------hccHHHHHHHHHHHcCCCcEEEEEeccccccccccccccCCccchH
Confidence 887655421000 00 0011578889999999999999865321 1
Q ss_pred --HHHHHHHHHHCCCeeEEEE
Q psy2395 537 --SNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 537 --~~~l~~ll~~~Gf~~i~~~ 555 (570)
.+.+..++.++||.+..+.
T Consensus 162 ~~~~~l~~~l~~aGf~i~~~~ 182 (218)
T 3mq2_A 162 SADEWLAPRYAEAGWKLADCR 182 (218)
T ss_dssp HHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCceeee
Confidence 2347778999999886653
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=131.30 Aligned_cols=125 Identities=14% Similarity=0.226 Sum_probs=97.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++..+ +.+++++++|+.+... .++||+|++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g---~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~--~~~fD~i~~ 190 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLG---YDVTSWDHNENSIAFLNETKEKE----NLNISTALYDINAANI--QENYDFIVS 190 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCGGGCCC--CSCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHc----CCceEEEEeccccccc--cCCccEEEE
Confidence 67899999999999999999763 59999999999999999999874 3479999999976433 578999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC--------------CHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN--------------QSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~l~~ 542 (570)
++++...+ ......+++.+.++|+|||.+++..... ....+.+
T Consensus 191 ~~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (286)
T 3m70_A 191 TVVFMFLN-----------------------RERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELKE 247 (286)
T ss_dssp CSSGGGSC-----------------------GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCSSCCSCCBCTTHHHH
T ss_pred ccchhhCC-----------------------HHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCCCCccccCCHHHHHH
Confidence 88764221 0234689999999999999987754211 2456777
Q ss_pred HHHHCCCeeEEEE
Q psy2395 543 LLFKYGFSDIKSW 555 (570)
Q Consensus 543 ll~~~Gf~~i~~~ 555 (570)
++.. |..+...
T Consensus 248 ~~~~--~~~~~~~ 258 (286)
T 3m70_A 248 YYKD--WEFLEYN 258 (286)
T ss_dssp HTTT--SEEEEEE
T ss_pred HhcC--CEEEEEE
Confidence 7754 8776654
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-12 Score=130.35 Aligned_cols=145 Identities=14% Similarity=0.181 Sum_probs=110.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++..+ +.+++++|++ .+++.|++++...+ ...+++++.+|+.+. +. ...||+|+
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~-~~-~~~~D~v~ 237 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQG--VASRYHTIAGSAFEV-DY-GNDYDLVL 237 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHT--CGGGEEEEESCTTTS-CC-CSCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcC--CCcceEEEecccccC-CC-CCCCcEEE
Confidence 4668999999999999999998875 5799999999 99999999987642 233699999999763 22 24599999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++-+.+.. .......+++.+.+.|+|||++++....
T Consensus 238 ~~~~l~~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 294 (335)
T 2r3s_A 238 LPNFLHHF-----------------------DVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLAT 294 (335)
T ss_dssp EESCGGGS-----------------------CHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHH
T ss_pred EcchhccC-----------------------CHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHee
Confidence 95332211 1124578999999999999988764311
Q ss_pred ------CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 535 ------NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 535 ------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
...+++.+++.++||..+++. +..+..+++.++++
T Consensus 295 ~~~~~~~t~~~~~~ll~~aGf~~~~~~-~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 295 TPNGDAYTFAEYESMFSNAGFSHSQLH-SLPTTQQQVIVAYK 335 (335)
T ss_dssp SSSCCCCCHHHHHHHHHHTTCSEEEEE-CCTTSSSEEEEEEC
T ss_pred CCCCCcCCHHHHHHHHHHCCCCeeeEE-ECCCCceeEEEecC
Confidence 125678899999999998875 56677788888764
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.4e-12 Score=133.67 Aligned_cols=165 Identities=18% Similarity=0.214 Sum_probs=109.1
Q ss_pred cCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
++..+.++..+.++.++ ++.++...+.. .+++.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|+++
T Consensus 74 ~g~~l~ldg~~q~~~~de~~Y~e~l~~l~l~~-~~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~ 151 (314)
T 2b2c_A 74 YGNVLVLDGIVQATERDEFSYQEMLAHLPMFA-HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKF 151 (314)
T ss_dssp TEEEEEETTEEEEESSSSSHHHHHHHHHHHHH-SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEECCEeecCCcchhHHHHHHHHHHHhh-CCCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHH
Confidence 35666676666555543 44444433322 24567999999999999999997643 57999999999999999999
Q ss_pred HHhhcccC-CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHH-HHHHHHHh
Q psy2395 442 AKKKLTKY-NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI-KEIVKNAS 519 (570)
Q Consensus 442 ~~~~~~~~-~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~-~~~l~~~~ 519 (570)
+....... ..+++++.+|+.+.+....++||+|++|++.... |. ...+ ..+++.+.
T Consensus 152 ~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d~~~~~~-------------~~---------~~l~t~~~l~~~~ 209 (314)
T 2b2c_A 152 LPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDPVG-------------PA---------ESLFGQSYYELLR 209 (314)
T ss_dssp CTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC-----------------------------------HHHHHH
T ss_pred HHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEcCCCCCC-------------cc---------hhhhHHHHHHHHH
Confidence 86421011 4579999999977655445789999999852110 00 0122 67888999
Q ss_pred hccccCeEEEEEEcC--CCHH---HHHHHHHHCCCeeEEEE
Q psy2395 520 KYLVKNGLLLIEHGY--NQSN---LVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~--~~~~---~l~~ll~~~Gf~~i~~~ 555 (570)
+.|+|||++++..+. .... .+.+.+++. |..+..+
T Consensus 210 ~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~v-F~~v~~~ 249 (314)
T 2b2c_A 210 DALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYA 249 (314)
T ss_dssp HHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEE
T ss_pred hhcCCCeEEEEECCCcccCHHHHHHHHHHHHHH-CCcceEE
Confidence 999999999987643 2333 334444443 6665544
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-12 Score=121.90 Aligned_cols=122 Identities=11% Similarity=0.095 Sum_probs=95.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++ . ...+++++++|+.+. ...++||+|+
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~---~----~~~~~~~~~~d~~~~--~~~~~~D~v~ 112 (218)
T 3ou2_A 45 NIRGDVLELASGTGYWTRHLSGLA---DRVTALDGSAEMIAEAGR---H----GLDNVEFRQQDLFDW--TPDRQWDAVF 112 (218)
T ss_dssp TSCSEEEEESCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHGG---G----CCTTEEEEECCTTSC--CCSSCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHh---c----CCCCeEEEecccccC--CCCCceeEEE
Confidence 456799999999999999999873 699999999999999987 1 224699999999775 3357999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc----------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG---------------------- 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~---------------------- 533 (570)
++..+...+ -.....+++.+.++|+|||.+++...
T Consensus 113 ~~~~l~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (218)
T 3ou2_A 113 FAHWLAHVP-----------------------DDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQDDSEPEVAVRRT 169 (218)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEEECCCC------------CEEEEE
T ss_pred EechhhcCC-----------------------HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhhhcccccceeee
Confidence 964322110 12347889999999999999987532
Q ss_pred ------------CCCHHHHHHHHHHCCCeeE
Q psy2395 534 ------------YNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 534 ------------~~~~~~l~~ll~~~Gf~~i 552 (570)
....+.+.++++++||.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~ 200 (218)
T 3ou2_A 170 LQDGRSFRIVKVFRSPAELTERLTALGWSCS 200 (218)
T ss_dssp CTTSCEEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred cCCcchhhHhhcCCCHHHHHHHHHHCCCEEE
Confidence 1245789999999999943
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.5e-13 Score=150.26 Aligned_cols=173 Identities=11% Similarity=0.029 Sum_probs=113.1
Q ss_pred CCccccchhHHHHHHHHHhhcC---CCCCEEEEECCcccHHHHHHHHhcC--CCcEEEEEeCCHHHHHHH--HHHHHhhc
Q psy2395 374 SDVLIPRPETELLVDLIVKKTF---EKKIKLLEMGTGSGAIAIAIAIYSK--NKIEIIATDISKFALKIA--KKNAKKKL 446 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~---~~~~~VLDlGcGtG~i~l~la~~~~--~~~~V~gvDis~~al~~A--~~n~~~~~ 446 (570)
..+++|++....|+..+..... .++.+|||+|||||.+++.+++..+ ...+++|+|+++.+++.| +.|+..+.
T Consensus 295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~ 374 (878)
T 3s1s_A 295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ 374 (878)
T ss_dssp BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence 4567888888888877322222 3577999999999999999998763 135799999999999999 77765432
Q ss_pred ccCCCC-EEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCc--cc---cccccccccCCChHHHHHHHHHHhh
Q psy2395 447 TKYNIP-IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDL--RF---EPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 447 ~~~~~~-v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~--~~---ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
...+.. ..+...|++........+||+||+||||............. ++ .|... ..+.+..+.+..|++.+.+
T Consensus 375 LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p-~s~~G~~DLy~aFIe~Al~ 453 (878)
T 3s1s_A 375 LVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRP-QTLFGQIGVEALFLELVTE 453 (878)
T ss_dssp TCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCC-SSCSSSCCHHHHHHHHHHH
T ss_pred hhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccc-cccccccchHHHHHHHHHH
Confidence 212222 35666777653222236899999999997532211000000 00 00000 0112345678889999999
Q ss_pred ccccCeEEEEEEcCCC-------HHHHHHHHHHC
Q psy2395 521 YLVKNGLLLIEHGYNQ-------SNLVRKLLFKY 547 (570)
Q Consensus 521 ~LkpgG~l~~~~~~~~-------~~~l~~ll~~~ 547 (570)
+|++||+++++++..- ...+++.+.+.
T Consensus 454 lLKpGGrLAfIlP~s~Lf~sg~~~kkLRk~LLe~ 487 (878)
T 3s1s_A 454 LVQDGTVISAIMPKQYLTAQGNESKAFREFLVGN 487 (878)
T ss_dssp HSCTTCEEEEEEETHHHHCCSHHHHHHHHHHTTT
T ss_pred hcCCCcEEEEEEChHHhccCChHHHHHHHHHHhC
Confidence 9999999999887632 45677776654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=127.44 Aligned_cols=119 Identities=14% Similarity=0.169 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
+....++..+... .++.+|||+|||+|..++.+++..+.+.+|+++|+|+.+++.|++++..++ ...+++++++|+
T Consensus 55 ~~~~~~l~~l~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d~ 130 (229)
T 2avd_A 55 CEQAQLLANLARL--IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPA 130 (229)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCH
T ss_pred HHHHHHHHHHHHh--cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCC--CCCeEEEEEcCH
Confidence 4444444444443 356799999999999999999876546899999999999999999998753 234799999998
Q ss_pred ccccccC--C---CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNY--K---KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~--~---~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.++.. . ++||+|++|+|.. .+..+++.+.++|+|||++++.
T Consensus 131 ~~~~~~~~~~~~~~~~D~v~~d~~~~----------------------------~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 131 LETLDELLAAGEAGTFDVAVVDADKE----------------------------NCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp HHHHHHHHHTTCTTCEEEEEECSCST----------------------------THHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCCccEEEECCCHH----------------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 7654321 1 5899999987621 3467888899999999999884
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=136.96 Aligned_cols=136 Identities=22% Similarity=0.235 Sum_probs=93.0
Q ss_pred chhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCC-------------------------------------
Q psy2395 380 RPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKN------------------------------------- 421 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~------------------------------------- 421 (570)
.|..+.+...++.... .++..|||+|||||.+++.+|.....
T Consensus 183 Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~ 262 (393)
T 3k0b_A 183 APIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQ 262 (393)
T ss_dssp CSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTC
T ss_pred CCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccC
Confidence 3444556666555432 45678999999999999998876531
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccc
Q psy2395 422 KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501 (570)
Q Consensus 422 ~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al 501 (570)
..+|+|+|+|+.|++.|+.|+..++ ...+++|.++|+.+... ..+||+|++||||...-..
T Consensus 263 ~~~V~GvDid~~al~~Ar~Na~~~g--l~~~I~~~~~D~~~~~~--~~~fD~Iv~NPPYg~rl~~--------------- 323 (393)
T 3k0b_A 263 PLNIIGGDIDARLIEIAKQNAVEAG--LGDLITFRQLQVADFQT--EDEYGVVVANPPYGERLED--------------- 323 (393)
T ss_dssp CCCEEEEESCHHHHHHHHHHHHHTT--CTTCSEEEECCGGGCCC--CCCSCEEEECCCCCCSHHH---------------
T ss_pred CceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChHhCCC--CCCCCEEEECCCCccccCC---------------
Confidence 1469999999999999999999753 23359999999977433 3589999999999743100
Q ss_pred cccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHH
Q psy2395 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSN 538 (570)
Q Consensus 502 ~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 538 (570)
..+-..+|..+-+.+.. -+||.+++.++.....
T Consensus 324 --~~~l~~ly~~lg~~lk~--~~g~~~~iit~~~~l~ 356 (393)
T 3k0b_A 324 --EEAVRQLYREMGIVYKR--MPTWSVYVLTSYELFE 356 (393)
T ss_dssp --HHHHHHHHHHHHHHHHT--CTTCEEEEEECCTTHH
T ss_pred --chhHHHHHHHHHHHHhc--CCCCEEEEEECCHHHH
Confidence 00001233443333332 3599999988865533
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.8e-12 Score=131.58 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=90.9
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.+.+.+......++.+|||+|||+|.++..+++..++..+|+|+|+|+.+++.|++++..+. ....+++|+++|+.+.
T Consensus 24 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~v~~~~~d~~~~- 101 (299)
T 3g5t_A 24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSP-DTYKNVSFKISSSDDF- 101 (299)
T ss_dssp HHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC--CCTTEEEEECCTTCC-
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCCCceEEEEcCHHhC-
Confidence 34455555545578899999999999999999865336899999999999999999988630 0245799999999663
Q ss_pred ccCC------CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 465 QNYK------KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 465 ~~~~------~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+... ++||+|+++..++.. ....+++.+.++|+|||.+++
T Consensus 102 ~~~~~~~~~~~~fD~V~~~~~l~~~--------------------------~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 102 KFLGADSVDKQKIDMITAVECAHWF--------------------------DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp GGGCTTTTTSSCEEEEEEESCGGGS--------------------------CHHHHHHHHHHHEEEEEEEEE
T ss_pred CccccccccCCCeeEEeHhhHHHHh--------------------------CHHHHHHHHHHhcCCCcEEEE
Confidence 3333 689999997543211 236889999999999999977
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=128.21 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=94.0
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
+....++..+... .++.+|||+|||+|..++.+++..+++.+|+++|+|+.+++.|++|+...+ ...+++++++|+
T Consensus 56 ~~~~~~l~~l~~~--~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~gda 131 (237)
T 3c3y_A 56 PLAGQLMSFVLKL--VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG--VEHKINFIESDA 131 (237)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCH
T ss_pred HHHHHHHHHHHHh--hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcCH
Confidence 4555555555443 256799999999999999999987656899999999999999999998743 233699999999
Q ss_pred ccccccC------CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 461 YNNLQNY------KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 461 ~~~l~~~------~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.+.++.. .++||+|+++.+. ..+..+++.+.++|+|||++++..
T Consensus 132 ~~~l~~l~~~~~~~~~fD~I~~d~~~----------------------------~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 132 MLALDNLLQGQESEGSYDFGFVDADK----------------------------PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp HHHHHHHHHSTTCTTCEEEEEECSCG----------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHhccCCCCCcCEEEECCch----------------------------HHHHHHHHHHHHhcCCCeEEEEec
Confidence 7754422 4689999997431 235788899999999999998853
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=119.95 Aligned_cols=130 Identities=14% Similarity=0.126 Sum_probs=97.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|+++. .+++++.+| .+..+++||+|+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~--------~~v~~~~~d----~~~~~~~~D~v~ 80 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEKF--------DSVITLSDP----KEIPDNSVDFIL 80 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHHC--------TTSEEESSG----GGSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHhC--------CCcEEEeCC----CCCCCCceEEEE
Confidence 466799999999999999999765 49999999999999999882 248899999 233347899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------------CCHHHHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-------------NQSNLVRK 542 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-------------~~~~~l~~ 542 (570)
++..+...+ ....+++.+.+.|+|||++++.... ...+.+.+
T Consensus 81 ~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (170)
T 3i9f_A 81 FANSFHDMD-------------------------DKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMG 135 (170)
T ss_dssp EESCSTTCS-------------------------CHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHH
T ss_pred Eccchhccc-------------------------CHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHH
Confidence 986554221 2368899999999999999885421 13567888
Q ss_pred HHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 543 LLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 543 ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
++. ||..++... .....-.+++.
T Consensus 136 ~l~--Gf~~~~~~~-~~~~~~~l~~~ 158 (170)
T 3i9f_A 136 WFS--NFVVEKRFN-PTPYHFGLVLK 158 (170)
T ss_dssp HTT--TEEEEEEEC-SSTTEEEEEEE
T ss_pred HHh--CcEEEEccC-CCCceEEEEEe
Confidence 887 999887654 34444444443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-12 Score=121.43 Aligned_cols=127 Identities=14% Similarity=0.142 Sum_probs=96.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++..++ ..++.++++|+.+. +. .++||+|++
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~~~d~~~~-~~-~~~~D~v~~ 103 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIEN---LDNLHTRVVDLNNL-TF-DRQYDFILS 103 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEECCGGGC-CC-CCCEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCC---CCCcEEEEcchhhC-CC-CCCceEEEE
Confidence 5679999999999999999976 3699999999999999999987642 12599999999663 33 578999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------------CCHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------NQSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------~~~~~l~~ 542 (570)
+.++...+ .+....+++.+.+.|+|||++++.... ...+++.+
T Consensus 104 ~~~l~~~~-----------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 160 (199)
T 2xvm_A 104 TVVLMFLE-----------------------AKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRR 160 (199)
T ss_dssp ESCGGGSC-----------------------GGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHH
T ss_pred cchhhhCC-----------------------HHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHH
Confidence 86543211 113478899999999999998764311 13567788
Q ss_pred HHHHCCCeeEEEEe
Q psy2395 543 LLFKYGFSDIKSWR 556 (570)
Q Consensus 543 ll~~~Gf~~i~~~~ 556 (570)
++.. |..+....
T Consensus 161 ~~~~--f~~~~~~~ 172 (199)
T 2xvm_A 161 YYEG--WERVKYNE 172 (199)
T ss_dssp HTTT--SEEEEEEC
T ss_pred HhcC--CeEEEecc
Confidence 8865 88776543
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=134.48 Aligned_cols=142 Identities=15% Similarity=0.122 Sum_probs=96.8
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc-------c-cCCCCEE
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL-------T-KYNIPIK 454 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~-------~-~~~~~v~ 454 (570)
+..++..+ ...++.+|||+|||+|.++..+++...+..+|+|+|+++.+++.|++|+...+ . ....+++
T Consensus 94 ~~~~l~~l---~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~ 170 (336)
T 2b25_A 94 INMILSMM---DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 170 (336)
T ss_dssp HHHHHHHH---TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred HHHHHHhc---CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence 44444443 23567899999999999999999874335799999999999999999988531 0 0124699
Q ss_pred EEEcccccccc-cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 455 FIKSNWYNNLQ-NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 455 ~~~~D~~~~l~-~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++++|+.+... ...++||+|++|+|.. ..++..+.+.|+|||.+++..+
T Consensus 171 ~~~~d~~~~~~~~~~~~fD~V~~~~~~~------------------------------~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 171 FIHKDISGATEDIKSLTFDAVALDMLNP------------------------------HVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp EEESCTTCCC-------EEEEEECSSST------------------------------TTTHHHHGGGEEEEEEEEEEES
T ss_pred EEECChHHcccccCCCCeeEEEECCCCH------------------------------HHHHHHHHHhcCCCcEEEEEeC
Confidence 99999977532 2235799999987521 1256788899999999998766
Q ss_pred C-CCHHHHHHHHHH--CCCeeEEEEec
Q psy2395 534 Y-NQSNLVRKLLFK--YGFSDIKSWRD 557 (570)
Q Consensus 534 ~-~~~~~l~~ll~~--~Gf~~i~~~~D 557 (570)
. .+...+.+.+.+ .+|....+...
T Consensus 221 ~~~~~~~~~~~l~~~~~~~~~~~~~~~ 247 (336)
T 2b25_A 221 NITQVIELLDGIRTCELALSCEKISEV 247 (336)
T ss_dssp SHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred CHHHHHHHHHHHHhcCCCcccceEEEe
Confidence 4 233444454544 34554444433
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=138.10 Aligned_cols=133 Identities=26% Similarity=0.277 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCC-------------------------------------C
Q psy2395 381 PETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKN-------------------------------------K 422 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~-------------------------------------~ 422 (570)
|..+.+...++.... .++.+|||+|||||.+++.+|..... .
T Consensus 178 pl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 178 PIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp CCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 344556666655432 45679999999999999999876421 1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCcccccccccc
Q psy2395 423 IEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALT 502 (570)
Q Consensus 423 ~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~ 502 (570)
.+|+|+|+|+.|++.|+.|+..++ ....++|.++|+.+... ..+||+||+||||...-..
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~g--l~~~i~~~~~D~~~l~~--~~~~D~Iv~NPPyg~rl~~---------------- 317 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAG--VDEYIEFNVGDATQFKS--EDEFGFIITNPPYGERLED---------------- 317 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEECCGGGCCC--SCBSCEEEECCCCCCSHHH----------------
T ss_pred ceEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhcCc--CCCCcEEEECCCCcCccCC----------------
Confidence 579999999999999999999863 23369999999977433 3689999999999743100
Q ss_pred ccCCChHHHHHHHHHHhhccc--cCeEEEEEEcCCCHH
Q psy2395 503 DYSNGLSSIKEIVKNASKYLV--KNGLLLIEHGYNQSN 538 (570)
Q Consensus 503 ~~~~gl~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~ 538 (570)
......+...+.+.|+ +||.+++.++.....
T Consensus 318 -----~~~l~~ly~~lg~~lk~~~g~~~~iit~~~~l~ 350 (385)
T 3ldu_A 318 -----KDSVKQLYKELGYAFRKLKNWSYYLITSYEDFE 350 (385)
T ss_dssp -----HHHHHHHHHHHHHHHHTSBSCEEEEEESCTTHH
T ss_pred -----HHHHHHHHHHHHHHHhhCCCCEEEEEECCHHHH
Confidence 0112233333333444 589998888865543
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-12 Score=124.54 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=84.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++.. ..+++++++|+.+.. ..++||+|+
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~-----~~~~~~~~~d~~~~~--~~~~fD~v~ 119 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAPHC---KRLTVIDVMPRAIGRACQRTKR-----WSHISWAATDILQFS--TAELFDLIV 119 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGGGE---EEEEEEESCHHHHHHHHHHTTT-----CSSEEEEECCTTTCC--CSCCEEEEE
T ss_pred CCCCcEEEEcCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHhccc-----CCCeEEEEcchhhCC--CCCCccEEE
Confidence 456799999999999999998764 6899999999999999999874 237999999997654 357999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++..+.... ..+.+..+++.+.++|+|||.+++..
T Consensus 120 ~~~~l~~~~----------------------~~~~~~~~l~~~~~~L~pgG~l~~~~ 154 (216)
T 3ofk_A 120 VAEVLYYLE----------------------DMTQMRTAIDNMVKMLAPGGHLVFGS 154 (216)
T ss_dssp EESCGGGSS----------------------SHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EccHHHhCC----------------------CHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 975543211 12345688999999999999999865
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=128.26 Aligned_cols=148 Identities=16% Similarity=0.165 Sum_probs=104.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh--ccc------CCCCEEEEEcccccccccC
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK--LTK------YNIPIKFIKSNWYNNLQNY 467 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--~~~------~~~~v~~~~~D~~~~l~~~ 467 (570)
+++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++ .. +.. ...+++++.+|+.+.+..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~- 149 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN- 149 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred CCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence 45679999999999999999977 4 579999999999999999998 32 100 235799999998765544
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHH---HH
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLV---RK 542 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l---~~ 542 (570)
.++||+|++|+|+.... ..++ +...+++.+.+.|+|||++++..+. ...+.+ .+
T Consensus 150 ~~~fD~Ii~d~~~~~~~--------------------~~~l-~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~ 208 (281)
T 1mjf_A 150 NRGFDVIIADSTDPVGP--------------------AKVL-FSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYK 208 (281)
T ss_dssp CCCEEEEEEECCCCC-------------------------T-TSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHH
T ss_pred cCCeeEEEECCCCCCCc--------------------chhh-hHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHH
Confidence 57899999998753110 0000 1267888999999999999986533 344433 33
Q ss_pred HHHHCCCeeEEEEe----cCCCCceEEEEEe
Q psy2395 543 LLFKYGFSDIKSWR----DLSGIERVTQGKI 569 (570)
Q Consensus 543 ll~~~Gf~~i~~~~----D~~g~~R~~~~~~ 569 (570)
.+++. |..+..+. ...|...+++|..
T Consensus 209 ~l~~~-f~~v~~~~~~vP~~~g~~~~~~as~ 238 (281)
T 1mjf_A 209 EMKKV-FDRVYYYSFPVIGYASPWAFLVGVK 238 (281)
T ss_dssp HHHHH-CSEEEEEEECCTTSSSSEEEEEEEE
T ss_pred HHHHH-CCceEEEEEecCCCCceEEEEEeeC
Confidence 44443 76666543 3457777888764
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=129.59 Aligned_cols=149 Identities=10% Similarity=0.093 Sum_probs=103.9
Q ss_pred HHHHHHHHHh---hcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc
Q psy2395 383 TELLVDLIVK---KTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458 (570)
Q Consensus 383 t~~l~~~~~~---~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~ 458 (570)
.+.|+..+.. ... .++.+|||||||+|.++..+++..+ +.+|++||+|+.+++.|++++... ...+++++++
T Consensus 71 ~e~m~~~~~~l~~~~p~p~~~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~ 146 (317)
T 3gjy_A 71 MRWIATGARAFIDAHQDASKLRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIP---RAPRVKIRVD 146 (317)
T ss_dssp HHHHHHHHHHHHHHHSCGGGCEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEES
T ss_pred HHHHHHHHHhhcccCCCCCCCEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhcccc---CCCceEEEEC
Confidence 4555555543 122 2234999999999999999998766 579999999999999999998642 2457999999
Q ss_pred ccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CC
Q psy2395 459 NWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQ 536 (570)
Q Consensus 459 D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~ 536 (570)
|+.+.+... .++||+|++|.+..... | ..+ ....+++.+.+.|+|||++++..+. ..
T Consensus 147 Da~~~l~~~~~~~fDvIi~D~~~~~~~------------~-~~L--------~t~efl~~~~r~LkpgGvlv~~~~~~~~ 205 (317)
T 3gjy_A 147 DARMVAESFTPASRDVIIRDVFAGAIT------------P-QNF--------TTVEFFEHCHRGLAPGGLYVANCGDHSD 205 (317)
T ss_dssp CHHHHHHTCCTTCEEEEEECCSTTSCC------------C-GGG--------SBHHHHHHHHHHEEEEEEEEEEEEECTT
T ss_pred cHHHHHhhccCCCCCEEEECCCCcccc------------c-hhh--------hHHHHHHHHHHhcCCCcEEEEEecCCcc
Confidence 998765432 47899999985422110 0 000 1167888999999999999886643 22
Q ss_pred H---HHHHHHHHHCCCeeEEEEec
Q psy2395 537 S---NLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 537 ~---~~l~~ll~~~Gf~~i~~~~D 557 (570)
. ..+.+.+.+. |..+.++.+
T Consensus 206 ~~~~~~~~~tL~~v-F~~v~~~~~ 228 (317)
T 3gjy_A 206 LRGAKSELAGMMEV-FEHVAVIAD 228 (317)
T ss_dssp CHHHHHHHHHHHHH-CSEEEEEEC
T ss_pred hHHHHHHHHHHHHH-CCceEEEEe
Confidence 1 2344455443 777777764
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=9e-13 Score=129.65 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=102.2
Q ss_pred Cccccc-hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHh---cCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 375 DVLIPR-PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIY---SKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 375 ~~~~pr-~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~---~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
+..+++ |++..++..++... ++.+|||+|||+|+++..+++. ..++++|+|+|+|+.+++.|+ . ..
T Consensus 60 ~~~~~~~p~~~~~l~~~l~~~--~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~---~-----~~ 129 (236)
T 2bm8_A 60 GLRMLKDPDTQAVYHDMLWEL--RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---S-----DM 129 (236)
T ss_dssp TEECCSCHHHHHHHHHHHHHH--CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---G-----GC
T ss_pred cccccCCHHHHHHHHHHHHhc--CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh---c-----cC
Confidence 455666 87777776666543 4579999999999999999987 223689999999999999887 1 23
Q ss_pred CCEEEEEcccccc--cccCC-CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh-ccccCe
Q psy2395 451 IPIKFIKSNWYNN--LQNYK-KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK-YLVKNG 526 (570)
Q Consensus 451 ~~v~~~~~D~~~~--l~~~~-~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~-~LkpgG 526 (570)
.+++++++|+.+. ++... .+||+|+++... ..+..++..+.+ +|+|||
T Consensus 130 ~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~~----------------------------~~~~~~l~~~~r~~LkpGG 181 (236)
T 2bm8_A 130 ENITLHQGDCSDLTTFEHLREMAHPLIFIDNAH----------------------------ANTFNIMKWAVDHLLEEGD 181 (236)
T ss_dssp TTEEEEECCSSCSGGGGGGSSSCSSEEEEESSC----------------------------SSHHHHHHHHHHHTCCTTC
T ss_pred CceEEEECcchhHHHHHhhccCCCCEEEECCch----------------------------HhHHHHHHHHHHhhCCCCC
Confidence 4699999999764 33323 379999986431 023678888886 999999
Q ss_pred EEEEEE-----cCCCHHHHHHHHHHC--CCeeE
Q psy2395 527 LLLIEH-----GYNQSNLVRKLLFKY--GFSDI 552 (570)
Q Consensus 527 ~l~~~~-----~~~~~~~l~~ll~~~--Gf~~i 552 (570)
++++.. .......+.+++++. +|...
T Consensus 182 ~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~ 214 (236)
T 2bm8_A 182 YFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMD 214 (236)
T ss_dssp EEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEE
T ss_pred EEEEEeCcccccccCHHHHHHHHHhCcccEEEc
Confidence 999843 112334788888877 56543
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.39 E-value=3e-12 Score=128.50 Aligned_cols=131 Identities=17% Similarity=0.191 Sum_probs=100.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh-cccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK-LTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~-~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.++.+|||+|||+|.++..+++...+..+|+++|+|+.+++.|++|+..+ + ....+++++++|+.+. +...++||+|
T Consensus 98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g-~~~~~v~~~~~d~~~~-~~~~~~~D~v 175 (280)
T 1i9g_A 98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-QPPDNWRLVVSDLADS-ELPDGSVDRA 175 (280)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-SCCTTEEEECSCGGGC-CCCTTCEEEE
T ss_pred CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCCcEEEEECchHhc-CCCCCceeEE
Confidence 56789999999999999999986433579999999999999999999763 1 0124699999999764 2224689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHH-CCCeeE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFK-YGFSDI 552 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~-~Gf~~i 552 (570)
++|+|.. ..+++.+.+.|+|||++++.++. .+...+...+.+ .+|..+
T Consensus 176 ~~~~~~~------------------------------~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~~~ 225 (280)
T 1i9g_A 176 VLDMLAP------------------------------WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEP 225 (280)
T ss_dssp EEESSCG------------------------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCC
T ss_pred EECCcCH------------------------------HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcCCc
Confidence 9987611 24677888899999999997765 455566666766 788877
Q ss_pred EEEecC
Q psy2395 553 KSWRDL 558 (570)
Q Consensus 553 ~~~~D~ 558 (570)
+.+..+
T Consensus 226 ~~~~~~ 231 (280)
T 1i9g_A 226 RAWETL 231 (280)
T ss_dssp EEECCC
T ss_pred EEEEEe
Confidence 666543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=4.2e-12 Score=129.97 Aligned_cols=141 Identities=16% Similarity=0.178 Sum_probs=104.8
Q ss_pred HHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 384 ELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 384 ~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
...++.++..+. .++.+|||+|||+|.++..+++.. +++|+|+|+|+.+++.|++++...+ ...++.++++|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~ 151 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWED 151 (318)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGG
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEECChHH
Confidence 344455554432 467899999999999999999875 3699999999999999999988632 23469999999854
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-C------
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-N------ 535 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~------ 535 (570)
++ ++||+|+++..+... +......+++.+.++|+|||.+++.... .
T Consensus 152 -~~---~~fD~v~~~~~l~~~-----------------------~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 204 (318)
T 2fk8_A 152 -FA---EPVDRIVSIEAFEHF-----------------------GHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMA 204 (318)
T ss_dssp -CC---CCCSEEEEESCGGGT-----------------------CGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHH
T ss_pred -CC---CCcCEEEEeChHHhc-----------------------CHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhh
Confidence 22 689999997543211 0124578999999999999999884421 1
Q ss_pred ----------------------------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ----------------------------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ----------------------------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
..+.+.+++.++||..+.+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 252 (318)
T 2fk8_A 205 ARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPL 252 (318)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCE
T ss_pred hccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEE
Confidence 24567888899999876543
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-12 Score=127.54 Aligned_cols=139 Identities=17% Similarity=0.125 Sum_probs=101.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC--------------------------
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY-------------------------- 449 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~-------------------------- 449 (570)
.++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|++++.......
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 132 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL 132 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence 3567999999999999999886652 489999999999999999886421000
Q ss_pred CCCE-EEEEcccccccccCC---CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 450 NIPI-KFIKSNWYNNLQNYK---KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 450 ~~~v-~~~~~D~~~~l~~~~---~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
..++ .++++|+.+..+... ++||+|+++.... ........+..+++.+.++|+||
T Consensus 133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~---------------------~~~~~~~~~~~~l~~~~~~Lkpg 191 (265)
T 2i62_A 133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD---------------------AACPDLPAYRTALRNLGSLLKPG 191 (265)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH---------------------HHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hhhheeEEEeeeccCCCCCccccCCccEEEEhhhhh---------------------hhcCChHHHHHHHHHHHhhCCCC
Confidence 0127 899999976543233 6899999963211 00112345688999999999999
Q ss_pred eEEEEEEcC----------------CCHHHHHHHHHHCCCeeEEEEec
Q psy2395 526 GLLLIEHGY----------------NQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 526 G~l~~~~~~----------------~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
|++++.... ...+.+.+++.++||..+.+...
T Consensus 192 G~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 239 (265)
T 2i62_A 192 GFLVMVDALKSSYYMIGEQKFSSLPLGWETVRDAVEEAGYTIEQFEVI 239 (265)
T ss_dssp EEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred cEEEEEecCCCceEEcCCccccccccCHHHHHHHHHHCCCEEEEEEEe
Confidence 999885421 24568999999999999877654
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.9e-12 Score=135.36 Aligned_cols=116 Identities=10% Similarity=0.180 Sum_probs=86.2
Q ss_pred HHHHHHhh-cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh-------hcccCCCCEEEEE
Q psy2395 386 LVDLIVKK-TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK-------KLTKYNIPIKFIK 457 (570)
Q Consensus 386 l~~~~~~~-~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~-------~~~~~~~~v~~~~ 457 (570)
++..++.. ...++.+|||||||+|.+++.+|...+ ..+|+|||+|+.+++.|++|+.. ++. ...+++|++
T Consensus 161 ~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl-~~~rVefi~ 238 (438)
T 3uwp_A 161 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGK-KHAEYTLER 238 (438)
T ss_dssp HHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB-CCCEEEEEE
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC-CCCCeEEEE
Confidence 33344433 235788999999999999999998764 35799999999999999987632 211 124799999
Q ss_pred cccccccccCC--CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 458 SNWYNNLQNYK--KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 458 ~D~~~~l~~~~--~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+|+.+. +... ..||+|++|++|+.. .....+.++.+.|||||.|++
T Consensus 239 GD~~~l-p~~d~~~~aDVVf~Nn~~F~p--------------------------dl~~aL~Ei~RvLKPGGrIVs 286 (438)
T 3uwp_A 239 GDFLSE-EWRERIANTSVIFVNNFAFGP--------------------------EVDHQLKERFANMKEGGRIVS 286 (438)
T ss_dssp CCTTSH-HHHHHHHTCSEEEECCTTCCH--------------------------HHHHHHHHHHTTSCTTCEEEE
T ss_pred CcccCC-ccccccCCccEEEEcccccCc--------------------------hHHHHHHHHHHcCCCCcEEEE
Confidence 999763 2211 369999999987631 235666778899999999986
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=130.18 Aligned_cols=136 Identities=14% Similarity=0.076 Sum_probs=94.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc-------------cCC-------------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT-------------KYN------------- 450 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~-------------~~~------------- 450 (570)
++.+|||+|||+|.++..++... +.+|+|+|+|+.|++.|++++..... ..+
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 148 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 148 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccC--CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence 56799999999999655444432 46999999999999999987642100 000
Q ss_pred -CCEEEEEcccccccc-----cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 451 -IPIKFIKSNWYNNLQ-----NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 451 -~~v~~~~~D~~~~l~-----~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
..+.++.+|+.+.++ ..+++||+|+++..+.. .......+..+++++.++|||
T Consensus 149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~---------------------~~~~~~~~~~~l~~~~r~Lkp 207 (289)
T 2g72_A 149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEA---------------------VSPDLASFQRALDHITTLLRP 207 (289)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHH---------------------HCSSHHHHHHHHHHHHTTEEE
T ss_pred hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhh---------------------hcCCHHHHHHHHHHHHHhcCC
Confidence 015678889876333 12356999999743211 011234568899999999999
Q ss_pred CeEEEEEE----------------cCCCHHHHHHHHHHCCCeeEEEE
Q psy2395 525 NGLLLIEH----------------GYNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 525 gG~l~~~~----------------~~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
||+|++.. .....+.+.++|.++||..+.+.
T Consensus 208 GG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 208 GGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp EEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CCEEEEEEecCcceEEcCCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 99998742 12356889999999999987655
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=128.23 Aligned_cols=144 Identities=10% Similarity=0.082 Sum_probs=110.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++++...+ ...+++|..+|+++..+ ..||+|+
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~--l~~~v~~~~~d~~~~~p---~~~D~v~ 273 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRG--LADRCEILPGDFFETIP---DGADVYL 273 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTTCCC---SSCSEEE
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcC--cCCceEEeccCCCCCCC---CCceEEE
Confidence 4568999999999999999999876 689999999 999999999987642 34579999999985443 3799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cC------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GY------------------ 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~------------------ 534 (570)
++-.++..+ ......+++.+.+.|+|||++++.. +.
T Consensus 274 ~~~vlh~~~-----------------------d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~ 330 (369)
T 3gwz_A 274 IKHVLHDWD-----------------------DDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVG 330 (369)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHS
T ss_pred hhhhhccCC-----------------------HHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcC
Confidence 954332111 1223579999999999999998732 11
Q ss_pred ---CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 535 ---NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 535 ---~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
...+++.+++.++||+.++++....+...++.++.
T Consensus 331 g~~~t~~e~~~ll~~aGf~~~~~~~~~~~~~svie~~~ 368 (369)
T 3gwz_A 331 GAERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368 (369)
T ss_dssp CCCBCHHHHHHHHHTTTEEEEEEEECSSSSEEEEEEEE
T ss_pred CccCCHHHHHHHHHHCCCeEEEEEECCCCCcEEEEEEe
Confidence 12567889999999999999875566666666653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=8e-12 Score=130.85 Aligned_cols=143 Identities=12% Similarity=0.136 Sum_probs=108.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++++..++ ...+++++.+|+++.++ ..||+|+
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~---~~~D~v~ 253 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFKPLP---VTADVVL 253 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCS---CCEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCCcCC---CCCCEEE
Confidence 4578999999999999999999876 689999999 999999999998642 23469999999976444 3499999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-----C----------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-----Y---------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-----~---------------- 534 (570)
++..++..+ -.....+++.+.+.|+|||++++... .
T Consensus 254 ~~~vl~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 310 (374)
T 1qzz_A 254 LSFVLLNWS-----------------------DEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLT 310 (374)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHH
T ss_pred EeccccCCC-----------------------HHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCCcchhhhcchHHHH
Confidence 975443111 11235889999999999998876432 1
Q ss_pred ------CCHHHHHHHHHHCCCeeEEEEecCCCCc-----eEEEEEe
Q psy2395 535 ------NQSNLVRKLLFKYGFSDIKSWRDLSGIE-----RVTQGKI 569 (570)
Q Consensus 535 ------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~-----R~~~~~~ 569 (570)
...+++.+++.++||..+++... .+.. .++.+++
T Consensus 311 ~~~~~~~~~~~~~~ll~~aGf~~~~~~~~-~~~~~~~~~~~i~~~~ 355 (374)
T 1qzz_A 311 FMGGRVRTRDEVVDLAGSAGLALASERTS-GSTTLPFDFSILEFTA 355 (374)
T ss_dssp HHSCCCCCHHHHHHHHHTTTEEEEEEEEE-CCSSCSSCEEEEEEEE
T ss_pred hCCCcCCCHHHHHHHHHHCCCceEEEEEC-CCCcccCCcEEEEEEE
Confidence 14567888999999999887754 4444 6777664
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.7e-12 Score=120.30 Aligned_cols=101 Identities=18% Similarity=0.176 Sum_probs=81.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++|+..++ -.+++++.+|+.+.... .++||+|+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~~D~i~ 148 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHLV---QHVCSVERIKGLQWQARRRLKNLD---LHNVSTRHGDGWQGWQA-RAPFDAII 148 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhC---CEEEEEecCHHHHHHHHHHHHHcC---CCceEEEECCcccCCcc-CCCccEEE
Confidence 567899999999999999999873 699999999999999999998742 12699999999775443 47899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
++.+..... ..+.+.|+|||++++.++.
T Consensus 149 ~~~~~~~~~-------------------------------~~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 149 VTAAPPEIP-------------------------------TALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp ESSBCSSCC-------------------------------THHHHTEEEEEEEEEEECS
T ss_pred Eccchhhhh-------------------------------HHHHHhcccCcEEEEEEcC
Confidence 975432110 1456799999999998876
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=134.93 Aligned_cols=105 Identities=18% Similarity=0.178 Sum_probs=85.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC-EEEEEcccccccc-cCCCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSNWYNNLQ-NYKKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~-v~~~~~D~~~~l~-~~~~~fD~I 474 (570)
++.+|||+|||||.+++.++...+...+|+++|+|+.+++.+++|++.|+ ...+ ++++++|+.+.+. ...++||+|
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ng--l~~~~v~v~~~Da~~~l~~~~~~~fD~V 129 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNN--IPEDRYEIHGMEANFFLRKEWGFGFDYV 129 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTT--CCGGGEEEECSCHHHHHHSCCSSCEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhC--CCCceEEEEeCCHHHHHHHhhCCCCcEE
Confidence 46799999999999999999875323689999999999999999999864 2334 9999999977665 444689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++|| |.. ...++..+.+.|++||++++++
T Consensus 130 ~lDP-~g~----------------------------~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 130 DLDP-FGT----------------------------PVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp EECC-SSC----------------------------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECC-CcC----------------------------HHHHHHHHHHHhCCCCEEEEEe
Confidence 9998 321 1357778888999999998876
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=127.65 Aligned_cols=102 Identities=15% Similarity=0.118 Sum_probs=83.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..++ +.+|+|+|+|+.+++.|+++. .++.++++|+.+. + .+++||+|+
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~~--------~~~~~~~~d~~~~-~-~~~~fD~v~ 100 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADRL--------PNTNFGKADLATW-K-PAQKADLLY 100 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHHS--------TTSEEEECCTTTC-C-CSSCEEEEE
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC--------CCcEEEECChhhc-C-ccCCcCEEE
Confidence 4677999999999999999998865 578999999999999999872 2478999999663 3 357899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++..+... .....+++.+.++|+|||++++..+
T Consensus 101 ~~~~l~~~-------------------------~~~~~~l~~~~~~L~pgG~l~~~~~ 133 (259)
T 2p35_A 101 ANAVFQWV-------------------------PDHLAVLSQLMDQLESGGVLAVQMP 133 (259)
T ss_dssp EESCGGGS-------------------------TTHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred EeCchhhC-------------------------CCHHHHHHHHHHhcCCCeEEEEEeC
Confidence 97654321 1246889999999999999998653
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=126.60 Aligned_cols=118 Identities=14% Similarity=0.177 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhh--cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 382 ETELLVDLIVKK--TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 382 ~t~~l~~~~~~~--~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
....+++.+... ...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++.. ...++.++++|
T Consensus 22 ~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~~~d 94 (263)
T 2yqz_A 22 VAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKIAG----VDRKVQVVQAD 94 (263)
T ss_dssp HHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHTTT----SCTTEEEEESC
T ss_pred HHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHhhc----cCCceEEEEcc
Confidence 334555555331 1246789999999999999999965 36999999999999999999731 34569999999
Q ss_pred cccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 460 ~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+.+ ++..+++||+|+++..+...+ ....+++++.+.|+|||++++..
T Consensus 95 ~~~-~~~~~~~fD~v~~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~~~~ 141 (263)
T 2yqz_A 95 ARA-IPLPDESVHGVIVVHLWHLVP-------------------------DWPKVLAEAIRVLKPGGALLEGW 141 (263)
T ss_dssp TTS-CCSCTTCEEEEEEESCGGGCT-------------------------THHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccc-CCCCCCCeeEEEECCchhhcC-------------------------CHHHHHHHHHHHCCCCcEEEEEe
Confidence 955 444457899999975433111 23678899999999999998764
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.38 E-value=5.3e-12 Score=124.61 Aligned_cols=133 Identities=13% Similarity=0.115 Sum_probs=93.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC----C-CCEEEEEcccccccc--cCCC
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY----N-IPIKFIKSNWYNNLQ--NYKK 469 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~----~-~~v~~~~~D~~~~l~--~~~~ 469 (570)
++.+|||+|||+|.+++.++..++ ..+|+|+|+|+.+++.|++|+..+.... + .++.++++|+.+.++ ...+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 567999999999999999999875 5799999999999999999987641000 2 369999999987554 2347
Q ss_pred ceeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-HHHHHHHHHH
Q psy2395 470 LFNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-SNLVRKLLFK 546 (570)
Q Consensus 470 ~fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~l~~ll~~ 546 (570)
.+|.|+.+.| +.... +.... .....++..+.++|+|||.+++.+.... .+.+.+.+..
T Consensus 128 ~~d~v~~~~p~p~~k~~--~~~~r-----------------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~ 188 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQR--KHKAR-----------------IITNTLLSEYAYVLKEGGVVYTITDVKDLHEWMVKHLEE 188 (246)
T ss_dssp CEEEEEEESCCCC--------CSS-----------------CCCHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred ccCEEEEECCCcccccc--hhHHh-----------------hccHHHHHHHHHHcCCCCEEEEEeccHHHHHHHHHHHHh
Confidence 8999987633 22110 00000 0126788999999999999998765533 2344556666
Q ss_pred CCC
Q psy2395 547 YGF 549 (570)
Q Consensus 547 ~Gf 549 (570)
.|+
T Consensus 189 ~~~ 191 (246)
T 2vdv_E 189 HPL 191 (246)
T ss_dssp STT
T ss_pred CcC
Confidence 663
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.5e-12 Score=123.06 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=83.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc--CCCCEEEEEcccccccccCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK--YNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
..++.+|||+|||+|.++..+++...+..+|+|+|+|+.+++.|++|+..++.. ...++.++++|+..... ..++||
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD 153 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA-EEAPYD 153 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG-GGCCEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc-cCCCcC
Confidence 356789999999999999999987533469999999999999999998864210 02369999999865432 236899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
+|+++.|+. .+++.+.+.|+|||++++.++..
T Consensus 154 ~i~~~~~~~-------------------------------~~~~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 154 AIHVGAAAP-------------------------------VVPQALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp EEEECSBBS-------------------------------SCCHHHHHTEEEEEEEEEEESCT
T ss_pred EEEECCchH-------------------------------HHHHHHHHhcCCCcEEEEEEecC
Confidence 999987652 11246678999999999988653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-12 Score=133.64 Aligned_cols=125 Identities=18% Similarity=0.214 Sum_probs=91.7
Q ss_pred ccccchh-HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC-----
Q psy2395 376 VLIPRPE-TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY----- 449 (570)
Q Consensus 376 ~~~pr~~-t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~----- 449 (570)
.|-|... .+.+.-.++... ++.+|||+|||||.+++.++...+ +.+|+++|+|+.+++.|++|+..|....
T Consensus 27 F~np~~~~nr~l~~~~l~~~--~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~ 103 (378)
T 2dul_A 27 FYNPRMALNRDIVVVLLNIL--NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESK 103 (378)
T ss_dssp CCCGGGHHHHHHHHHHHHHH--CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECS
T ss_pred eeCCchHHHHHHHHHHHHHc--CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhccccccccc
Confidence 3345532 333333333333 577999999999999999998864 4689999999999999999999861000
Q ss_pred ------CC-CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 450 ------NI-PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 450 ------~~-~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
+. +++++++|+.+.......+||+|+.|||+.. ..++..+.+.|
T Consensus 104 ~~~~~~gl~~i~v~~~Da~~~~~~~~~~fD~I~lDP~~~~-----------------------------~~~l~~a~~~l 154 (378)
T 2dul_A 104 GRAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPFGSP-----------------------------MEFLDTALRSA 154 (378)
T ss_dssp SEEEEESSSEEEEEESCHHHHHHHSTTCEEEEEECCSSCC-----------------------------HHHHHHHHHHE
T ss_pred ccccccCCCceEEEcCcHHHHHHhccCCCCEEEeCCCCCH-----------------------------HHHHHHHHHhc
Confidence 22 3999999997755433458999999987531 46777888899
Q ss_pred ccCeEEEEEE
Q psy2395 523 VKNGLLLIEH 532 (570)
Q Consensus 523 kpgG~l~~~~ 532 (570)
++||++++.+
T Consensus 155 k~gG~l~vt~ 164 (378)
T 2dul_A 155 KRRGILGVTA 164 (378)
T ss_dssp EEEEEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999888765
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=127.94 Aligned_cols=122 Identities=19% Similarity=0.221 Sum_probs=95.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++. + +.+|+|+|+|+.+++.|+++.. ++.++++|+.+ ++. +++||+|+
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~~--------~~~~~~~d~~~-~~~-~~~fD~v~ 122 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNYP--------HLHFDVADARN-FRV-DKPLDAVF 122 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHCT--------TSCEEECCTTT-CCC-SSCEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhCC--------CCEEEECChhh-CCc-CCCcCEEE
Confidence 4677999999999999999997 2 5799999999999999987652 37899999965 333 47899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC--------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-------------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-------------------- 535 (570)
++..+.... ....+++++.+.|+|||++++..+..
T Consensus 123 ~~~~l~~~~-------------------------d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (279)
T 3ccf_A 123 SNAMLHWVK-------------------------EPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIH 177 (279)
T ss_dssp EESCGGGCS-------------------------CHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCC
T ss_pred EcchhhhCc-------------------------CHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCc
Confidence 975543211 23678899999999999999865431
Q ss_pred -----------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 -----------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 -----------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
....+.++|.++||..+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 208 (279)
T 3ccf_A 178 NPQALNPWYFPSIGEYVNILEKQGFDVTYAA 208 (279)
T ss_dssp CGGGGCCCCCCCHHHHHHHHHHHTEEEEEEE
T ss_pred cccCcCceeCCCHHHHHHHHHHcCCEEEEEE
Confidence 23457888889999987654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-12 Score=129.68 Aligned_cols=137 Identities=12% Similarity=0.156 Sum_probs=95.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC-CCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY-NIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~-~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.++.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|++++....... ..+++++.+|+.+.++...++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I 172 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 172 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence 4568999999999999999997653 5799999999999999999976411012 4579999999977655445789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc--CCCHH---HHHHHHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG--YNQSN---LVRKLLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~---~l~~ll~~~Gf 549 (570)
++|+|...... .......+++.+.+.|+|||++++..+ ..... .+.+.+++ -|
T Consensus 173 i~d~~~~~~~~---------------------~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~-~f 230 (304)
T 2o07_A 173 ITDSSDPMGPA---------------------ESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQS-LF 230 (304)
T ss_dssp EEECC--------------------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHH-HC
T ss_pred EECCCCCCCcc---------------------hhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHH-hC
Confidence 99987431100 001235788899999999999998763 33333 33344444 36
Q ss_pred eeEEEE
Q psy2395 550 SDIKSW 555 (570)
Q Consensus 550 ~~i~~~ 555 (570)
..+..+
T Consensus 231 ~~v~~~ 236 (304)
T 2o07_A 231 PVVAYA 236 (304)
T ss_dssp SEEEEE
T ss_pred CCceeE
Confidence 655544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.5e-12 Score=125.93 Aligned_cols=120 Identities=24% Similarity=0.271 Sum_probs=92.4
Q ss_pred chhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc
Q psy2395 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D 459 (570)
.+....++..+... .++.+|||+|||+|..++.++...+++.+|+++|+|+.+++.|++++..++ ...+++++++|
T Consensus 57 ~~~~~~~l~~l~~~--~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g--~~~~i~~~~~d 132 (232)
T 3cbg_A 57 SPEQAQFLGLLISL--TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG--VAEKISLRLGP 132 (232)
T ss_dssp CHHHHHHHHHHHHH--HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESC
T ss_pred CHHHHHHHHHHHHh--cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCcEEEEEcC
Confidence 45555555555443 246799999999999999999877546799999999999999999998753 23469999999
Q ss_pred cccccccC---C--CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 460 WYNNLQNY---K--KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 460 ~~~~l~~~---~--~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+.+.++.. + ++||+|+++.+. ..+..+++.+.++|+|||++++.
T Consensus 133 ~~~~l~~l~~~~~~~~fD~V~~d~~~----------------------------~~~~~~l~~~~~~LkpgG~lv~~ 181 (232)
T 3cbg_A 133 ALATLEQLTQGKPLPEFDLIFIDADK----------------------------RNYPRYYEIGLNLLRRGGLMVID 181 (232)
T ss_dssp HHHHHHHHHTSSSCCCEEEEEECSCG----------------------------GGHHHHHHHHHHTEEEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCCcCEEEECCCH----------------------------HHHHHHHHHHHHHcCCCeEEEEe
Confidence 86543321 2 689999997541 23577889999999999999885
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-12 Score=125.37 Aligned_cols=135 Identities=10% Similarity=0.021 Sum_probs=98.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHH------HHHHHHHHHHhhcccCCCCEEEEEcc-ccc-cccc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKF------ALKIAKKNAKKKLTKYNIPIKFIKSN-WYN-NLQN 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~------al~~A~~n~~~~~~~~~~~v~~~~~D-~~~-~l~~ 466 (570)
..++.+|||+|||+|.++..++..+.+..+|+|+|+|+. +++.|++++..++ ...+++++++| +.. .++.
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~ 118 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP--LGDRLTVHFNTNLSDDLGPI 118 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST--TGGGEEEECSCCTTTCCGGG
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC--CCCceEEEECChhhhccCCC
Confidence 356789999999999999999988533479999999997 9999999987532 22469999998 422 2333
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-c------------
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-G------------ 533 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~------------ 533 (570)
.+++||+|+++.++...++ ...+++.+..+++|||++++.. .
T Consensus 119 ~~~~fD~v~~~~~l~~~~~-------------------------~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~ 173 (275)
T 3bkx_A 119 ADQHFDRVVLAHSLWYFAS-------------------------ANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHL 173 (275)
T ss_dssp TTCCCSEEEEESCGGGSSC-------------------------HHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHH
T ss_pred CCCCEEEEEEccchhhCCC-------------------------HHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHH
Confidence 3578999999876542211 1346666667777899998742 1
Q ss_pred ----------------------CCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 534 ----------------------YNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 534 ----------------------~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
......+.++++++||..+....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~ 218 (275)
T 3bkx_A 174 QAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTI 218 (275)
T ss_dssp HHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCC
T ss_pred HHHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEE
Confidence 11245778889999999876543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.36 E-value=9.2e-12 Score=129.36 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=109.6
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++++...+ ...+++++.+|+++......+.||+|+++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 255 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHD--LGGRVEFFEKNLLDARNFEGGAADVVMLN 255 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTT--CGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred CCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcC--CCCceEEEeCCcccCcccCCCCccEEEEe
Confidence 78999999999999999999886 589999999 899999999988642 23469999999987542234679999995
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc---C--------------------
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG---Y-------------------- 534 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~---~-------------------- 534 (570)
-.++.. .......+++.+.+.|+|||++++... .
T Consensus 256 ~vlh~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (352)
T 3mcz_A 256 DCLHYF-----------------------DAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSADFSLHMMVNTN 312 (352)
T ss_dssp SCGGGS-----------------------CHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSHHHHHHHHHHHHHST
T ss_pred cccccC-----------------------CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCchHHHhhHHHHhhCC
Confidence 433211 112347899999999999999987421 0
Q ss_pred ----CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 535 ----NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 535 ----~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
...+++.+++.++||+.++.. .|...+++|+++
T Consensus 313 ~~~~~t~~e~~~ll~~aGf~~~~~~---~g~~~l~~a~kp 349 (352)
T 3mcz_A 313 HGELHPTPWIAGVVRDAGLAVGERS---IGRYTLLIGQRS 349 (352)
T ss_dssp TCCCCCHHHHHHHHHHTTCEEEEEE---ETTEEEEEEECC
T ss_pred CCCcCCHHHHHHHHHHCCCceeeec---cCceEEEEEecC
Confidence 124668899999999988743 466788888764
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-12 Score=127.76 Aligned_cols=148 Identities=14% Similarity=0.045 Sum_probs=98.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD 472 (570)
..++.+|||+|||+|..++.++....+..+|+|+|+++.+++.+++|+..++. .+++++++|+.+..... ..+||
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~---~~v~~~~~D~~~~~~~~~~~~~fD 176 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---SCCELAEEDFLAVSPSDPRYHEVH 176 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEECCGGGSCTTCGGGTTEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---CeEEEEeCChHhcCccccccCCCC
Confidence 35678999999999999999998754457999999999999999999997532 35999999986643221 14799
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKLL 544 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ll 544 (570)
.|++|||+.........+ +..+ ........ ......++..+.++|+ ||++++.+.. .+...+..++
T Consensus 177 ~Vl~D~PcSg~G~~~r~p-d~~~----~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l 250 (309)
T 2b9e_A 177 YILLDPSCSGSGMPSRQL-EEPG----AGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDAL 250 (309)
T ss_dssp EEEECCCCCC-----------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHH
T ss_pred EEEEcCCcCCCCCCccCC-Chhh----hccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHH
Confidence 999999996544321110 1100 00000111 1334678999999887 9998875432 4455667777
Q ss_pred HHC-C-Cee
Q psy2395 545 FKY-G-FSD 551 (570)
Q Consensus 545 ~~~-G-f~~ 551 (570)
.++ + |..
T Consensus 251 ~~~~~~~~~ 259 (309)
T 2b9e_A 251 QQNPGAFRL 259 (309)
T ss_dssp TTSTTTEEE
T ss_pred HhCCCcEEE
Confidence 665 3 543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.9e-12 Score=128.61 Aligned_cols=153 Identities=12% Similarity=0.137 Sum_probs=104.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc--CCCCEEEEEcccccccccCCCceeE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK--YNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
+++.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|++++...... ...+++++.+|+.+.++...++||+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 4567999999999999999997643 579999999999999999997641000 1357999999997765544578999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---C---CHHHHHHHHHHC
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---N---QSNLVRKLLFKY 547 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---~---~~~~l~~ll~~~ 547 (570)
|++|++...... .|. .. -+...+++.+.+.|+|||++++..+. . ....+.+.+++.
T Consensus 155 Ii~d~~~~~~~~----------~~~-------~~-l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~ 216 (314)
T 1uir_A 155 VIIDLTDPVGED----------NPA-------RL-LYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREA 216 (314)
T ss_dssp EEEECCCCBSTT----------CGG-------GG-GSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTT
T ss_pred EEECCCCccccc----------Ccc-------hh-ccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHH
Confidence 999976431000 000 00 01368899999999999999886432 1 234455556554
Q ss_pred CCeeEEEEe----cCCCCceEEEEE
Q psy2395 548 GFSDIKSWR----DLSGIERVTQGK 568 (570)
Q Consensus 548 Gf~~i~~~~----D~~g~~R~~~~~ 568 (570)
|..+..+. -..|...+++|.
T Consensus 217 -F~~v~~~~~~vP~~~g~~~~~~as 240 (314)
T 1uir_A 217 -FRYVRSYKNHIPGFFLNFGFLLAS 240 (314)
T ss_dssp -CSEEEEEEEEEGGGTEEEEEEEEE
T ss_pred -CCceEEEEEecCCCCCeEEEEEEE
Confidence 66665443 234455566654
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=7.1e-12 Score=141.70 Aligned_cols=161 Identities=20% Similarity=0.165 Sum_probs=108.3
Q ss_pred cchhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcC-------------------------------------
Q psy2395 379 PRPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSK------------------------------------- 420 (570)
Q Consensus 379 pr~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~------------------------------------- 420 (570)
+.|..+.|...++.... .++..|||++||||.+++.+|....
T Consensus 171 ~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~ 250 (703)
T 3v97_A 171 IAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARK 250 (703)
T ss_dssp CCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhh
Confidence 34555666666665433 4567899999999999999886531
Q ss_pred ----CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccc
Q psy2395 421 ----NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRF 495 (570)
Q Consensus 421 ----~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ 495 (570)
...+|+|+|+|+.|++.|+.|+..++ ....++|.++|+.+..... .++||+||+||||...-.
T Consensus 251 ~~~~~~~~i~G~Did~~av~~A~~N~~~ag--v~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg---------- 318 (703)
T 3v97_A 251 GLAEYSSHFYGSDSDARVIQRARTNARLAG--IGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLD---------- 318 (703)
T ss_dssp HHHHCCCCEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC-------------
T ss_pred ccccCCccEEEEECCHHHHHHHHHHHHHcC--CCCceEEEECChhhCccccccCCCCEEEeCCCcccccc----------
Confidence 12579999999999999999999864 2335999999997743322 238999999999964210
Q ss_pred cccccccccCCCh-HHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEE
Q psy2395 496 EPINALTDYSNGL-SSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQ 566 (570)
Q Consensus 496 ep~~al~~~~~gl-~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~ 566 (570)
....+ .+|.. +....+.+.|||.+++.++... +.+..|.+..+.++-++|.-.+.+
T Consensus 319 --------~~~~l~~ly~~-l~~~lk~~~~g~~~~ilt~~~~------l~~~~glk~~k~~~l~nG~l~~~~ 375 (703)
T 3v97_A 319 --------SEPALIALHSL-LGRIMKNQFGGWNLSLFSASPD------LLSCLQLRADKQYKAKNGPLDCVQ 375 (703)
T ss_dssp --------CCHHHHHHHHH-HHHHHHHHCTTCEEEEEESCHH------HHHTTCCCEEEEEEEEETTEEEEE
T ss_pred --------chhHHHHHHHH-HHHHHHhhCCCCeEEEEeCCHH------HHHHhCCCcccceeeecCCEEEEE
Confidence 00111 22333 3444555678999999887633 344668777666666666555443
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=9.4e-12 Score=114.74 Aligned_cols=136 Identities=13% Similarity=0.194 Sum_probs=96.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-----c--cCC
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-----Q--NYK 468 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-----~--~~~ 468 (570)
.++.+|||+|||+|.++..+++...++.+++|+|+|+ ++.. .++.++++|+.+.. + ..+
T Consensus 21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (180)
T 1ej0_A 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------------VGVDFLQGDFRDELVMKALLERVGD 86 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------------TTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------------CcEEEEEcccccchhhhhhhccCCC
Confidence 5677999999999999999998843357999999999 6532 24889999997642 0 224
Q ss_pred CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHHC
Q psy2395 469 KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFKY 547 (570)
Q Consensus 469 ~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~~ 547 (570)
++||+|++|+|+........ ...........+++.+.++|+|||.+++.. .......+...+...
T Consensus 87 ~~~D~i~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~ 152 (180)
T 1ej0_A 87 SKVQVVMSDMAPNMSGTPAV--------------DIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL 152 (180)
T ss_dssp CCEEEEEECCCCCCCSCHHH--------------HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH
T ss_pred CceeEEEECCCccccCCCcc--------------chHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHHh
Confidence 68999999998764321100 000001223688999999999999998854 445667777777774
Q ss_pred CCeeEEEEecCCC
Q psy2395 548 GFSDIKSWRDLSG 560 (570)
Q Consensus 548 Gf~~i~~~~D~~g 560 (570)
|..+.+.+....
T Consensus 153 -~~~~~~~~~~~~ 164 (180)
T 1ej0_A 153 -FTKVKVRKPDSS 164 (180)
T ss_dssp -EEEEEEECCTTS
T ss_pred -hhhEEeecCCcc
Confidence 888877765443
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=121.82 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=95.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-cccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN-LQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fD~I 474 (570)
.++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++. ..++++|+.+. .+..+++||+|
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~----------~~~~~~d~~~~~~~~~~~~fD~v 97 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL----------DHVVLGDIETMDMPYEEEQFDCV 97 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS----------SEEEESCTTTCCCCSCTTCEEEE
T ss_pred cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC----------CcEEEcchhhcCCCCCCCccCEE
Confidence 46789999999999999999876 279999999999999987653 25888998653 33334789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------------------
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-------------------- 534 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------- 534 (570)
+++..+.... ....+++.+.+.|+|||++++.++.
T Consensus 98 ~~~~~l~~~~-------------------------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (230)
T 3cc8_A 98 IFGDVLEHLF-------------------------DPWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGNWTYTEY 152 (230)
T ss_dssp EEESCGGGSS-------------------------CHHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTCCCCBSS
T ss_pred EECChhhhcC-------------------------CHHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCCceeccC
Confidence 9964432111 1268899999999999999987532
Q ss_pred ----------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 ----------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 ----------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
.....+.+++.++||+.+.+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 184 (230)
T 3cc8_A 153 GLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184 (230)
T ss_dssp STTBTTCCCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCCcceEEEecHHHHHHHHHHcCCeEEEEEe
Confidence 2357889999999999887654
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=129.91 Aligned_cols=145 Identities=14% Similarity=0.109 Sum_probs=109.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-ccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~~~~~fD~I 474 (570)
....+|||+|||+|.++..+++.++ +.+++++|+ |.+++.|++++...+ ...+++++.+|+++.. +. +++||+|
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~-p~~~D~v 252 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLS--GSERIHGHGANLLDRDVPF-PTGFDAV 252 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCT--TGGGEEEEECCCCSSSCCC-CCCCSEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcC--cccceEEEEccccccCCCC-CCCcCEE
Confidence 3567999999999999999999886 689999999 999999999987532 2247999999998742 22 2689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc---C-----------------
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG---Y----------------- 534 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~---~----------------- 534 (570)
+++-..+.- ..+....+++++.+.|+|||++++.-. .
T Consensus 253 ~~~~vlh~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~ 309 (363)
T 3dp7_A 253 WMSQFLDCF-----------------------SEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF 309 (363)
T ss_dssp EEESCSTTS-----------------------CHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH
T ss_pred EEechhhhC-----------------------CHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH
Confidence 995433211 112346889999999999999977321 1
Q ss_pred ----------CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 535 ----------NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 535 ----------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
...+++.+++.++||..++++........++.++
T Consensus 310 ~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~ 353 (363)
T 3dp7_A 310 TAMANGNSKMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCR 353 (363)
T ss_dssp HHSSCSSCCSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEE
T ss_pred HhhhCCCCcccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEe
Confidence 1356788999999999998887665555555544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=6.2e-12 Score=122.40 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=94.1
Q ss_pred ccCeeeeecCCccccchhHH-HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC-----CcEEEEEeCCHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPRPETE-LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN-----KIEIIATDISKFALKIA 438 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr~~t~-~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~-----~~~V~gvDis~~al~~A 438 (570)
|++..+.+..+..+..|... .+++.+.. ...++.+|||+|||+|.++..+++..+. ..+|+|+|+++.+++.|
T Consensus 52 y~d~~~~~~~~~~~~~p~~~~~~~~~l~~-~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a 130 (227)
T 1r18_A 52 YMDAPQPIGGGVTISAPHMHAFALEYLRD-HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRS 130 (227)
T ss_dssp TBSSCEEEETTEEECCHHHHHHHHHHTTT-TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHH
T ss_pred ccCCCcccCCCCccCChHHHHHHHHHHHh-hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHH
Confidence 33444444445455555432 33333321 1356789999999999999999986521 14899999999999999
Q ss_pred HHHHHhhccc--CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 439 KKNAKKKLTK--YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 439 ~~n~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
++|+..++.. ...+++++.+|+.+.++. .++||+|+++.+... +.+
T Consensus 131 ~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~I~~~~~~~~-------------------------------~~~ 178 (227)
T 1r18_A 131 KANLNTDDRSMLDSGQLLIVEGDGRKGYPP-NAPYNAIHVGAAAPD-------------------------------TPT 178 (227)
T ss_dssp HHHHHHHHHHHHHHTSEEEEESCGGGCCGG-GCSEEEEEECSCBSS-------------------------------CCH
T ss_pred HHHHHhcCccccCCCceEEEECCcccCCCc-CCCccEEEECCchHH-------------------------------HHH
Confidence 9998764200 023699999999774442 368999999876421 124
Q ss_pred HHhhccccCeEEEEEEcC
Q psy2395 517 NASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~ 534 (570)
.+.+.|+|||++++.++.
T Consensus 179 ~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 179 ELINQLASGGRLIVPVGP 196 (227)
T ss_dssp HHHHTEEEEEEEEEEESC
T ss_pred HHHHHhcCCCEEEEEEec
Confidence 667799999999998875
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=118.96 Aligned_cols=106 Identities=17% Similarity=0.100 Sum_probs=84.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.+.+..+|+|+|+|+.+++.|++++..++ -.++.+.++|+....+. .++||+|+
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~fD~v~ 151 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---YDNVIVIVGDGTLGYEP-LAPYDRIY 151 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---CTTEEEEESCGGGCCGG-GCCEEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCeEEEECCcccCCCC-CCCeeEEE
Confidence 467899999999999999999887334799999999999999999987642 13599999998654442 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
++.++... .+.+.+.|+|||++++.++...
T Consensus 152 ~~~~~~~~-------------------------------~~~~~~~L~pgG~lv~~~~~~~ 181 (215)
T 2yxe_A 152 TTAAGPKI-------------------------------PEPLIRQLKDGGKLLMPVGRYL 181 (215)
T ss_dssp ESSBBSSC-------------------------------CHHHHHTEEEEEEEEEEESSSS
T ss_pred ECCchHHH-------------------------------HHHHHHHcCCCcEEEEEECCCC
Confidence 98764311 1266789999999999887653
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-11 Score=119.53 Aligned_cols=120 Identities=18% Similarity=0.216 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
|....++..++.. .++.+|||+|||+|..+..+++..+.+.+|+++|+|+.+++.|++++..++ ...++.++++|+
T Consensus 46 ~~~~~~l~~l~~~--~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--~~~~v~~~~~d~ 121 (239)
T 2hnk_A 46 PEEGQFLNILTKI--SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--LENKIFLKLGSA 121 (239)
T ss_dssp HHHHHHHHHHHHH--HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCH
T ss_pred HHHHHHHHHHHHh--hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--CCCCEEEEECCH
Confidence 4444444444432 256799999999999999999887545799999999999999999998643 223599999998
Q ss_pred ccccccC---------------C-CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 461 YNNLQNY---------------K-KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 461 ~~~l~~~---------------~-~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
.+.++.. . ++||+|+++.+ ...+..+++.+.+.|+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~----------------------------~~~~~~~l~~~~~~L~p 173 (239)
T 2hnk_A 122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD----------------------------KENYPNYYPLILKLLKP 173 (239)
T ss_dssp HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC----------------------------GGGHHHHHHHHHHHEEE
T ss_pred HHHHHHHHhhcccccccccccCCCCCcCEEEEeCC----------------------------HHHHHHHHHHHHHHcCC
Confidence 7644321 2 68999999742 12346788899999999
Q ss_pred CeEEEEEE
Q psy2395 525 NGLLLIEH 532 (570)
Q Consensus 525 gG~l~~~~ 532 (570)
||++++..
T Consensus 174 gG~lv~~~ 181 (239)
T 2hnk_A 174 GGLLIADN 181 (239)
T ss_dssp EEEEEEEC
T ss_pred CeEEEEEc
Confidence 99999864
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-11 Score=125.88 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=109.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++++..++ ...+++++.+|+++. +. ..+|+|+
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~-~~--~~~D~v~ 261 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKG--VADRMRGIAVDIYKE-SY--PEADAVL 261 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTT--CTTTEEEEECCTTTS-CC--CCCSEEE
T ss_pred CCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcC--CCCCEEEEeCccccC-CC--CCCCEEE
Confidence 4677999999999999999999876 689999999 999999999988642 234699999999764 22 2359999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---------------------c-
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---------------------G- 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---------------------~- 533 (570)
++-.++..+ -+....+++.+.+.|+|||++++.. +
T Consensus 262 ~~~vlh~~~-----------------------d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 318 (359)
T 1x19_A 262 FCRILYSAN-----------------------EQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGM 318 (359)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHTTCCTTCEEEEEEECCCCTTSCCHHHHHHHGGGGGS
T ss_pred EechhccCC-----------------------HHHHHHHHHHHHHhcCCCCEEEEEecccCCCCCchHHHHHHHHHhcCC
Confidence 964432111 1235789999999999999996632 1
Q ss_pred C------CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEeC
Q psy2395 534 Y------NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKIS 570 (570)
Q Consensus 534 ~------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~~ 570 (570)
. ...+++.++++++||+.++++.-- ..+++.++++
T Consensus 319 g~~~~~~~t~~e~~~ll~~aGf~~v~~~~~~--~~~vi~a~kp 359 (359)
T 1x19_A 319 PFSVLGFKEQARYKEILESLGYKDVTMVRKY--DHLLVQAVKP 359 (359)
T ss_dssp SCCCCCCCCGGGHHHHHHHHTCEEEEEEEET--TEEEEEEECC
T ss_pred CCcccCCCCHHHHHHHHHHCCCceEEEEecC--CceEEEEeCC
Confidence 1 345678899999999998887633 5678877754
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-12 Score=130.14 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=82.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++...+|+|+|+|+.+++.|++++..++. .+++++++|+.+..+. .++||+|+
T Consensus 74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~---~~v~~~~~d~~~~~~~-~~~fD~Iv 149 (317)
T 1dl5_A 74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---ENVIFVCGDGYYGVPE-FSPYDVIF 149 (317)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---CSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---CCeEEEECChhhcccc-CCCeEEEE
Confidence 5678999999999999999998875346899999999999999999986421 2499999999764432 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+++++.... +.+.+.|+|||++++.++.
T Consensus 150 ~~~~~~~~~-------------------------------~~~~~~LkpgG~lvi~~~~ 177 (317)
T 1dl5_A 150 VTVGVDEVP-------------------------------ETWFTQLKEGGRVIVPINL 177 (317)
T ss_dssp ECSBBSCCC-------------------------------HHHHHHEEEEEEEEEEBCB
T ss_pred EcCCHHHHH-------------------------------HHHHHhcCCCcEEEEEECC
Confidence 988753110 3556799999999987654
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-12 Score=119.80 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=99.8
Q ss_pred HHHHHHHHhh-cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 384 ELLVDLIVKK-TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 384 ~~l~~~~~~~-~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
..|.+..... ..+++.+|||+|||+|.++..+++. ..+|+|+|+++.. ...+++++++|+.+
T Consensus 11 ~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~--------------~~~~v~~~~~D~~~ 73 (191)
T 3dou_A 11 FKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME--------------EIAGVRFIRCDIFK 73 (191)
T ss_dssp HHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC--------------CCTTCEEEECCTTS
T ss_pred HHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc--------------cCCCeEEEEccccC
Confidence 3444444433 2357789999999999999999976 4799999999852 12358999999976
Q ss_pred cccc------CC----CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 463 NLQN------YK----KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 463 ~l~~------~~----~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.... .. ++||+|++|+|........ ............++..+.++|+|||.|++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~--------------~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 74 ETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPS--------------RDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp SSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHH--------------HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcc--------------cCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 3210 11 3899999997643221100 0001123455788999999999999999866
Q ss_pred cCC-CHHHHHHHHHHCCCeeEEEEecCCCCc----eEEEEE
Q psy2395 533 GYN-QSNLVRKLLFKYGFSDIKSWRDLSGIE----RVTQGK 568 (570)
Q Consensus 533 ~~~-~~~~l~~ll~~~Gf~~i~~~~D~~g~~----R~~~~~ 568 (570)
-.. ....+...++. .|..+++.++.+++. .+++|+
T Consensus 140 ~~~~~~~~~~~~l~~-~F~~v~~~kP~asR~~s~E~y~v~~ 179 (191)
T 3dou_A 140 FQGDMTNDFIAIWRK-NFSSYKISKPPASRGSSSEIYIMFF 179 (191)
T ss_dssp ECSTHHHHHHHHHGG-GEEEEEEECC------CCEEEEEEE
T ss_pred cCCCCHHHHHHHHHH-hcCEEEEECCCCccCCCceEEEEEe
Confidence 433 34566666654 599999999887653 455553
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-12 Score=128.10 Aligned_cols=108 Identities=10% Similarity=0.094 Sum_probs=82.8
Q ss_pred HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 385 LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 385 ~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.+++++.... +.+.+|||+|||+|.++..|+..+ .+|+|+|+|+.|++.|++ ..++.++++|+.+ +
T Consensus 28 ~l~~~l~~~~-~~~~~vLDvGcGtG~~~~~l~~~~---~~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~-~ 93 (257)
T 4hg2_A 28 ALFRWLGEVA-PARGDALDCGCGSGQASLGLAEFF---ERVHAVDPGEAQIRQALR---------HPRVTYAVAPAED-T 93 (257)
T ss_dssp HHHHHHHHHS-SCSSEEEEESCTTTTTHHHHHTTC---SEEEEEESCHHHHHTCCC---------CTTEEEEECCTTC-C
T ss_pred HHHHHHHHhc-CCCCCEEEEcCCCCHHHHHHHHhC---CEEEEEeCcHHhhhhhhh---------cCCceeehhhhhh-h
Confidence 4556665543 456799999999999999999664 689999999999987753 2359999999854 5
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+..+++||+|+++-.++.. ....+++++.++|||||.|++..
T Consensus 94 ~~~~~sfD~v~~~~~~h~~--------------------------~~~~~~~e~~rvLkpgG~l~~~~ 135 (257)
T 4hg2_A 94 GLPPASVDVAIAAQAMHWF--------------------------DLDRFWAELRRVARPGAVFAAVT 135 (257)
T ss_dssp CCCSSCEEEEEECSCCTTC--------------------------CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCcccEEEEeeehhHh--------------------------hHHHHHHHHHHHcCCCCEEEEEE
Confidence 5556899999996443311 12578899999999999997744
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-11 Score=124.28 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=97.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC-CCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY-NIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~-~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+++.+|||+|||+|.++..+++..+ ..+|+++|+|+.+++.|++++..++... ..+++++.+|+.+.+....++||+|
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 4568999999999999999987643 5799999999999999999986421111 3579999999977654435789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHH-HHHHHHHhhccccCeEEEEEEcC--CCHHHH---HHHHHHCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI-KEIVKNASKYLVKNGLLLIEHGY--NQSNLV---RKLLFKYG 548 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~-~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l---~~ll~~~G 548 (570)
++|++..... . ...+ ..+++.+.+.|+|||++++..+. ...+.+ .+.+++.
T Consensus 156 i~d~~~~~~~-------------~---------~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~- 212 (283)
T 2i7c_A 156 IVDSSDPIGP-------------A---------ETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL- 212 (283)
T ss_dssp EEECCCTTTG-------------G---------GGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT-
T ss_pred EEcCCCCCCc-------------c---------hhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHH-
Confidence 9987532110 0 0111 68889999999999999987543 344433 3344443
Q ss_pred CeeEEEE
Q psy2395 549 FSDIKSW 555 (570)
Q Consensus 549 f~~i~~~ 555 (570)
|..+..+
T Consensus 213 F~~v~~~ 219 (283)
T 2i7c_A 213 FKKVEYA 219 (283)
T ss_dssp CSEEEEE
T ss_pred CCceEEE
Confidence 7766544
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=126.54 Aligned_cols=143 Identities=13% Similarity=0.121 Sum_probs=107.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++++..++ ...+++++.+|+++.++ ..||+|+
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~---~~~D~v~ 254 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEPLP---RKADAII 254 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSCCS---SCEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcC--CCCceEEEeCCCCCCCC---CCccEEE
Confidence 4567999999999999999999876 589999999 999999999998642 23479999999987544 3599999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++..++..+ -.....+++++.+.|+|||++++....
T Consensus 255 ~~~vl~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~ 311 (360)
T 1tw3_A 255 LSFVLLNWP-----------------------DHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVF 311 (360)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHH
T ss_pred EcccccCCC-----------------------HHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCcchhhhccHHHhhh
Confidence 965433111 112357899999999999998874322
Q ss_pred -----CCHHHHHHHHHHCCCeeEEEEecCCCC-----ceEEEEEe
Q psy2395 535 -----NQSNLVRKLLFKYGFSDIKSWRDLSGI-----ERVTQGKI 569 (570)
Q Consensus 535 -----~~~~~l~~ll~~~Gf~~i~~~~D~~g~-----~R~~~~~~ 569 (570)
...+++.+++.++||..++++.- .+. ..++.+++
T Consensus 312 ~~~~~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~~~~~~i~~~~ 355 (360)
T 1tw3_A 312 LGGALRTREKWDGLAASAGLVVEEVRQL-PSPTIPYDLSLLVLAP 355 (360)
T ss_dssp HSCCCCBHHHHHHHHHHTTEEEEEEEEE-ECSSSSCEEEEEEEEE
T ss_pred cCCcCCCHHHHHHHHHHCCCeEEEEEeC-CCCcccCccEEEEEEe
Confidence 12467788999999999887654 232 45565554
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=7e-12 Score=119.94 Aligned_cols=144 Identities=11% Similarity=0.164 Sum_probs=100.0
Q ss_pred HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc
Q psy2395 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ 465 (570)
Q Consensus 386 l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~ 465 (570)
+...+... ..++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.|++++.. ..++.++++|+.+. +
T Consensus 32 ~~~~l~~~-~~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~-~ 102 (215)
T 2pxx_A 32 FRALLEPE-LRPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKL-D 102 (215)
T ss_dssp HHHHHGGG-CCTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSC-C
T ss_pred HHHHHHHh-cCCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcC-C
Confidence 44444443 35678999999999999999998753 3899999999999999998763 24689999999663 3
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHH
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLF 545 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~ 545 (570)
..+++||+|++++++......+. .| +............+++.+.++|+|||.+++.... .......++.
T Consensus 103 ~~~~~fD~v~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~-~~~~~~~~~~ 171 (215)
T 2pxx_A 103 FPSASFDVVLEKGTLDALLAGER-------DP---WTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSA-APHFRTRHYA 171 (215)
T ss_dssp SCSSCEEEEEEESHHHHHTTTCS-------CT---TSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESC-CHHHHHHHHC
T ss_pred CCCCcccEEEECcchhhhccccc-------cc---cccccchhHHHHHHHHHHHHhCcCCCEEEEEeCC-CcHHHHHHHh
Confidence 33478999999887631110000 00 0000112345678999999999999999886654 3444556666
Q ss_pred HCCC
Q psy2395 546 KYGF 549 (570)
Q Consensus 546 ~~Gf 549 (570)
..||
T Consensus 172 ~~~~ 175 (215)
T 2pxx_A 172 QAYY 175 (215)
T ss_dssp CGGG
T ss_pred cccc
Confidence 6665
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-11 Score=124.73 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=102.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
+..+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++++...+ ...+++|..+|+++..+ ..||+|++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~p---~~~D~v~~ 241 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTG--LSGRAQVVVGSFFDPLP---AGAGGYVL 241 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCC---CSCSEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcC--cCcCeEEecCCCCCCCC---CCCcEEEE
Confidence 457999999999999999999886 689999999 999999999988642 33579999999985443 37999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------------------- 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------------------- 534 (570)
.-..+.. .-+....+++++.+.|+|||++++....
T Consensus 242 ~~vlh~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~d~~~~~~~~~~~ 298 (332)
T 3i53_A 242 SAVLHDW-----------------------DDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKE 298 (332)
T ss_dssp ESCGGGS-----------------------CHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCHHHHHHHHHHHSCCC
T ss_pred ehhhccC-----------------------CHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccHHHHHHHHhhCCCCC
Confidence 5332211 1123478999999999999999874321
Q ss_pred CCHHHHHHHHHHCCCeeEEEEec
Q psy2395 535 NQSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 535 ~~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
...+++.+++.++||+.++++..
T Consensus 299 ~t~~e~~~ll~~aGf~~~~~~~~ 321 (332)
T 3i53_A 299 RSLAELGELAAQAGLAVRAAHPI 321 (332)
T ss_dssp CCHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCHHHHHHHHHHCCCEEEEEEEC
Confidence 23567889999999999988854
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=118.82 Aligned_cols=122 Identities=21% Similarity=0.238 Sum_probs=95.2
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+|||+|||+|.++..++ . . +|+|+|+.+++.|+++ ++.++++|+.+ ++...++||+|+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~---~--~--~~vD~s~~~~~~a~~~----------~~~~~~~d~~~-~~~~~~~fD~v~~~ 109 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLK---I--K--IGVEPSERMAEIARKR----------GVFVLKGTAEN-LPLKDESFDFALMV 109 (219)
T ss_dssp SSCEEEETCTTSTTHHHHT---C--C--EEEESCHHHHHHHHHT----------TCEEEECBTTB-CCSCTTCEEEEEEE
T ss_pred CCcEEEeCCCCCHHHHHHH---H--H--hccCCCHHHHHHHHhc----------CCEEEEccccc-CCCCCCCeeEEEEc
Confidence 7799999999999998886 2 2 9999999999999876 27889999855 34434689999996
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-----------------------
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----------------------- 534 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----------------------- 534 (570)
..+... .....+++.+.+.|+|||.+++....
T Consensus 110 ~~l~~~-------------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (219)
T 1vlm_A 110 TTICFV-------------------------DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNAR 164 (219)
T ss_dssp SCGGGS-------------------------SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCC
T ss_pred chHhhc-------------------------cCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccc
Confidence 543211 12367889999999999999886432
Q ss_pred -CCHHHHHHHHHHCCCeeEEEEecCCCCc
Q psy2395 535 -NQSNLVRKLLFKYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 535 -~~~~~l~~ll~~~Gf~~i~~~~D~~g~~ 562 (570)
.....+.+++.++||..+.+..+..+.+
T Consensus 165 ~~~~~~l~~~l~~~Gf~~~~~~~~~~~~p 193 (219)
T 1vlm_A 165 FFSTEELMDLMRKAGFEEFKVVQTLFKHP 193 (219)
T ss_dssp CCCHHHHHHHHHHTTCEEEEEEEECCSCG
T ss_pred cCCHHHHHHHHHHCCCeEEEEecccCCCC
Confidence 2457889999999999999888765543
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-11 Score=125.07 Aligned_cols=138 Identities=9% Similarity=0.068 Sum_probs=97.1
Q ss_pred CCCCCEEEEECCcccHHH-HHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIA-IAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~-l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..++.+|||+|||+|.++ +.+|+. + +++|+|+|+|+.+++.|++++...+ . .+++|+++|+.+ ++ +++||+
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~-~-ga~V~gIDis~~~l~~Ar~~~~~~g--l-~~v~~v~gDa~~-l~--d~~FDv 191 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHV-Y-GMRVNVVEIEPDIAELSRKVIEGLG--V-DGVNVITGDETV-ID--GLEFDV 191 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHT-T-CCEEEEEESSHHHHHHHHHHHHHHT--C-CSEEEEESCGGG-GG--GCCCSE
T ss_pred CCCcCEEEEECCCccHHHHHHHHHc-c-CCEEEEEECCHHHHHHHHHHHHhcC--C-CCeEEEECchhh-CC--CCCcCE
Confidence 357889999999999776 445543 3 6899999999999999999998753 3 579999999976 33 478999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHH----HHHHHHHCCC
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL----VRKLLFKYGF 549 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----l~~ll~~~Gf 549 (570)
|+++-. ......+++++.+.|+|||++++......... +.. ....||
T Consensus 192 V~~~a~----------------------------~~d~~~~l~el~r~LkPGG~Lvv~~~~~~r~~l~~~v~~-~~~~gf 242 (298)
T 3fpf_A 192 LMVAAL----------------------------AEPKRRVFRNIHRYVDTETRIIYRTYTGMRAILYAPVSD-DDITGF 242 (298)
T ss_dssp EEECTT----------------------------CSCHHHHHHHHHHHCCTTCEEEEEECCGGGGGSSCCCCT-GGGTTE
T ss_pred EEECCC----------------------------ccCHHHHHHHHHHHcCCCcEEEEEcCcchhhhccccCCh-hhhhhh
Confidence 998421 01246889999999999999998664321110 000 123488
Q ss_pred eeEEEEecCC-CCceEEEEEe
Q psy2395 550 SDIKSWRDLS-GIERVTQGKI 569 (570)
Q Consensus 550 ~~i~~~~D~~-g~~R~~~~~~ 569 (570)
.......... -.+.++++++
T Consensus 243 ~~~~~~~p~~~v~N~vv~a~k 263 (298)
T 3fpf_A 243 RRAGVVLPSGKVNNTSVLVFK 263 (298)
T ss_dssp EEEEEECCCTTCCCEEEEEEE
T ss_pred hheeEECCCCCcCcEEEEEEc
Confidence 7755443332 2566777754
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-12 Score=131.37 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=92.5
Q ss_pred ccchhHHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 378 IPRPETELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 378 ~pr~~t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
..+..+..+.+.+.... ..++.+|||+|||+|.+++.+++.+ ..+|+|+|+| .+++.|++++..++ ...+++++
T Consensus 43 ~d~~r~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~--~~~~v~~~ 117 (376)
T 3r0q_C 43 SDRVRMDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANN--LDHIVEVI 117 (376)
T ss_dssp TCHHHHHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTT--CTTTEEEE
T ss_pred cChHHHHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcC--CCCeEEEE
Confidence 34445566666665432 2467899999999999999999875 3599999999 99999999998753 33469999
Q ss_pred EcccccccccCCCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
++|+.+... .++||+|++++ +|+... ......++..+.++|+|||++++
T Consensus 118 ~~d~~~~~~--~~~~D~Iv~~~~~~~l~~-----------------------e~~~~~~l~~~~~~LkpgG~li~ 167 (376)
T 3r0q_C 118 EGSVEDISL--PEKVDVIISEWMGYFLLR-----------------------ESMFDSVISARDRWLKPTGVMYP 167 (376)
T ss_dssp ESCGGGCCC--SSCEEEEEECCCBTTBTT-----------------------TCTHHHHHHHHHHHEEEEEEEES
T ss_pred ECchhhcCc--CCcceEEEEcChhhcccc-----------------------hHHHHHHHHHHHhhCCCCeEEEE
Confidence 999966332 27899999987 343211 01346788889999999999975
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.31 E-value=5e-12 Score=125.85 Aligned_cols=131 Identities=14% Similarity=0.177 Sum_probs=95.9
Q ss_pred HHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 386 LVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 386 l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
+.+.+...+. .++.+|||+|||+|.++..++. ++.+|+|+|+|+.+++.|+.+. +++|+++|+.+ +
T Consensus 22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~---------~~~~~~~d~~~-~ 88 (261)
T 3ege_A 22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP---------QVEWFTGYAEN-L 88 (261)
T ss_dssp HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT---------TEEEECCCTTS-C
T ss_pred HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc---------CCEEEECchhh-C
Confidence 3444444332 4678999999999999999996 2579999999999998776443 58999999965 4
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCC--------
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYN-------- 535 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~-------- 535 (570)
+..+++||+|+++..+... .....+++++.++|+ ||++++.. +..
T Consensus 89 ~~~~~~fD~v~~~~~l~~~-------------------------~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~ 142 (261)
T 3ege_A 89 ALPDKSVDGVISILAIHHF-------------------------SHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLY 142 (261)
T ss_dssp CSCTTCBSEEEEESCGGGC-------------------------SSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGG
T ss_pred CCCCCCEeEEEEcchHhhc-------------------------cCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHH
Confidence 4445799999997543211 124788999999999 99776643 210
Q ss_pred ---------------CHHHHHHHHHHCCCeeEEEEe
Q psy2395 536 ---------------QSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 536 ---------------~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
..+.+. +|.++||..+.+..
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 143 DYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp GTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred HHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 124566 99999998877654
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-11 Score=124.55 Aligned_cols=140 Identities=14% Similarity=0.123 Sum_probs=107.0
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++++...+ ...+++++.+|+++..+ +.||+|+++-
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~---~~~D~v~~~~ 241 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLL--AGERVSLVGGDMLQEVP---SNGDIYLLSR 241 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHH--HTTSEEEEESCTTTCCC---SSCSEEEEES
T ss_pred CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcC--CCCcEEEecCCCCCCCC---CCCCEEEEch
Confidence 8999999999999999998876 579999999 999999999987542 24469999999987432 5799999964
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cC---------------------
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GY--------------------- 534 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~--------------------- 534 (570)
.++..+ -.....+++.+.+.|+|||++++.- +.
T Consensus 242 vl~~~~-----------------------~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (334)
T 2ip2_A 242 IIGDLD-----------------------EAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGR 298 (334)
T ss_dssp CGGGCC-----------------------HHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCCC-----------------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhHHhhhHhHhhCCCc
Confidence 432110 1233689999999999999998752 11
Q ss_pred -CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 535 -NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 535 -~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
...+++.+++.++||..++++.. .+...++.++.
T Consensus 299 ~~t~~e~~~ll~~aGf~~~~~~~~-~~~~~~i~~~~ 333 (334)
T 2ip2_A 299 HRTTEEVVDLLGRGGFAVERIVDL-PMETRMIVAAR 333 (334)
T ss_dssp CCBHHHHHHHHHHTTEEEEEEEEE-TTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHCCCceeEEEEC-CCCCEEEEEEe
Confidence 12567788999999999988764 45556666653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=127.55 Aligned_cols=117 Identities=21% Similarity=0.238 Sum_probs=87.9
Q ss_pred HHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 384 ELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 384 ~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
..+.+.+.... ..++.+|||+|||+|.+++.+++.+ ..+|+|+|+|+ +++.|++++..++ ...+++++++|+.+
T Consensus 50 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g--~~~v~gvD~s~-~~~~a~~~~~~~~--~~~~i~~~~~d~~~ 124 (340)
T 2fyt_A 50 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSE-ILYQAMDIIRLNK--LEDTITLIKGKIEE 124 (340)
T ss_dssp HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTT
T ss_pred HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC--CCEEEEEChHH-HHHHHHHHHHHcC--CCCcEEEEEeeHHH
Confidence 33434444322 2467799999999999999999874 36999999997 9999999998753 23579999999965
Q ss_pred ccccCCCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 463 NLQNYKKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
. +.+.++||+|++++ +|.... ......++..+.++|+|||.++
T Consensus 125 ~-~~~~~~~D~Ivs~~~~~~l~~-----------------------~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 125 V-HLPVEKVDVIISEWMGYFLLF-----------------------ESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp S-CCSCSCEEEEEECCCBTTBTT-----------------------TCHHHHHHHHHHHHEEEEEEEE
T ss_pred h-cCCCCcEEEEEEcCchhhccC-----------------------HHHHHHHHHHHHhhcCCCcEEE
Confidence 3 33347899999987 444211 1245678889999999999987
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-11 Score=115.54 Aligned_cols=138 Identities=18% Similarity=0.151 Sum_probs=92.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------- 465 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------- 465 (570)
.++.+|||+|||+|.++..+++..++ ..+|+|+|+|+.+ ...+++++++|+.+...
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------------~~~~v~~~~~d~~~~~~~~~~~~~~i 86 (201)
T 2plw_A 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------------PIPNVYFIQGEIGKDNMNNIKNINYI 86 (201)
T ss_dssp CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------------CCTTCEEEECCTTTTSSCCC------
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------------CCCCceEEEccccchhhhhhcccccc
Confidence 56779999999999999999988752 4799999999932 11248899999866420
Q ss_pred ---------------cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 466 ---------------NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 466 ---------------~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
....+||+|++|+++...... . .++ .........++..+.++|+|||.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~-----~--~d~-------~~~~~~~~~~l~~~~~~LkpgG~lv~ 152 (201)
T 2plw_A 87 DNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNK-----I--DDH-------LNSCELTLSITHFMEQYINIGGTYIV 152 (201)
T ss_dssp -----CHHHHHHHHHHTTCCEEEEEECCCCCCCSCH-----H--HHH-------HHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCc-----c--cCH-------HHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 123689999998754321100 0 000 00011234588899999999999998
Q ss_pred EEc-CCCHHHHHHHHHHCCCeeEEEEecCCCCc
Q psy2395 531 EHG-YNQSNLVRKLLFKYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 531 ~~~-~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~ 562 (570)
.+. ......+...+.. .|..+.++++..++.
T Consensus 153 ~~~~~~~~~~l~~~l~~-~f~~v~~~~~~~~r~ 184 (201)
T 2plw_A 153 KMYLGSQTNNLKTYLKG-MFQLVHTTKPKASRN 184 (201)
T ss_dssp EEECSTTHHHHHHHHHT-TEEEEEECCCC----
T ss_pred EEeCCCCHHHHHHHHHH-HHheEEEECCcccCC
Confidence 554 3455667777765 588888888877554
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-11 Score=116.65 Aligned_cols=107 Identities=17% Similarity=0.254 Sum_probs=81.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|++++..+ +.++.++++|+.+ ++..+++||+|+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~-~~~~~~~fD~v~ 94 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSREN----NFKLNISKGDIRK-LPFKDESMSFVY 94 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHH----TCCCCEEECCTTS-CCSCTTCEEEEE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhc----CCceEEEECchhh-CCCCCCceeEEE
Confidence 457899999999999855444332 479999999999999999998763 3468899999965 343357899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++.++... .......+++.+.+.|+|||++++..
T Consensus 95 ~~~~l~~~-----------------------~~~~~~~~l~~~~~~LkpgG~l~~~~ 128 (209)
T 2p8j_A 95 SYGTIFHM-----------------------RKNDVKEAIDEIKRVLKPGGLACINF 128 (209)
T ss_dssp ECSCGGGS-----------------------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EcChHHhC-----------------------CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 96432211 01345789999999999999998754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-11 Score=119.10 Aligned_cols=101 Identities=22% Similarity=0.252 Sum_probs=81.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++..+ + ++.++++|+.+..+ ..++||+|+
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~----~-~v~~~~~d~~~~~~-~~~~fD~v~ 139 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYY----N-NIKLILGDGTLGYE-EEKPYDRVV 139 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTC----S-SEEEEESCGGGCCG-GGCCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhc----C-CeEEEECCcccccc-cCCCccEEE
Confidence 467799999999999999999875 68999999999999999998752 3 79999999976443 246899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
++.++... ...+.+.|+|||++++.++...
T Consensus 140 ~~~~~~~~-------------------------------~~~~~~~L~pgG~l~~~~~~~~ 169 (231)
T 1vbf_A 140 VWATAPTL-------------------------------LCKPYEQLKEGGIMILPIGVGR 169 (231)
T ss_dssp ESSBBSSC-------------------------------CHHHHHTEEEEEEEEEEECSSS
T ss_pred ECCcHHHH-------------------------------HHHHHHHcCCCcEEEEEEcCCC
Confidence 98654311 1246779999999999887543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.9e-11 Score=119.64 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=81.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++ .+|+|+|+|+.+++.|++|+..++ -.++.+..+|+...++. ..+||+|+
T Consensus 90 ~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~---~~~v~~~~~d~~~~~~~-~~~fD~Ii 163 (235)
T 1jg1_A 90 KPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDGSKGFPP-KAPYDVII 163 (235)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGG-GCCEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEECCcccCCCC-CCCccEEE
Confidence 4677999999999999999998874 689999999999999999998642 12499999998444432 24699999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ 536 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 536 (570)
++.+.... ...+.+.|+|||++++.++...
T Consensus 164 ~~~~~~~~-------------------------------~~~~~~~L~pgG~lvi~~~~~~ 193 (235)
T 1jg1_A 164 VTAGAPKI-------------------------------PEPLIEQLKIGGKLIIPVGSYH 193 (235)
T ss_dssp ECSBBSSC-------------------------------CHHHHHTEEEEEEEEEEECSSS
T ss_pred ECCcHHHH-------------------------------HHHHHHhcCCCcEEEEEEecCC
Confidence 98653210 1256679999999999887643
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=128.25 Aligned_cols=106 Identities=20% Similarity=0.241 Sum_probs=83.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..++ ...+++++++|+.+. +.+.++||+|++
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g--~~~v~gvD~s~-~l~~a~~~~~~~~--~~~~v~~~~~d~~~~-~~~~~~fD~Iis 139 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSS-ISDYAVKIVKANK--LDHVVTIIKGKVEEV-ELPVEKVDIIIS 139 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTC-CCSSSCEEEEEE
T ss_pred CCCEEEEEeccchHHHHHHHHCC--CCEEEEECcHH-HHHHHHHHHHHcC--CCCcEEEEECcHHHc-cCCCCceEEEEE
Confidence 57899999999999999999874 46999999995 9999999998753 334599999999664 333479999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+++..... ++ .....++..+.++|+|||+++.
T Consensus 140 ~~~~~~l~----------~~------------~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 140 EWMGYCLF----------YE------------SMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp CCCBBTBT----------BT------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred cccccccc----------Cc------------hhHHHHHHHHHHhCCCCCEEcc
Confidence 87532110 00 1346788889999999999864
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-11 Score=120.84 Aligned_cols=108 Identities=6% Similarity=-0.018 Sum_probs=77.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.|++.|++|+.. ......+...+.. ......++||+|+
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~~g---~~V~gvD~S~~ml~~Ar~~~~~----~~v~~~~~~~~~~-~~~~~~~~fD~Vv 115 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALERG---ASVTVFDFSQRMCDDLAEALAD----RCVTIDLLDITAE-IPKELAGHFDFVL 115 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHHTT---CEEEEEESCHHHHHHHHHHTSS----SCCEEEECCTTSC-CCGGGTTCCSEEE
T ss_pred CCcCEEEEEeCcchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHh----ccceeeeeecccc-cccccCCCccEEE
Confidence 567899999999999999999764 6899999999999999999864 2112222222220 0112246899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
+|..+.... .+....++..+.++| |||.+++.+...
T Consensus 116 ~~~~l~~~~-----------------------~~~~~~~l~~l~~lL-PGG~l~lS~~~g 151 (261)
T 3iv6_A 116 NDRLINRFT-----------------------TEEARRACLGMLSLV-GSGTVRASVKLG 151 (261)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred EhhhhHhCC-----------------------HHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence 986543110 123467888889999 999999977543
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-12 Score=128.84 Aligned_cols=114 Identities=20% Similarity=0.293 Sum_probs=80.9
Q ss_pred CCCEEEEECCcccH----HHHHHHHhcCC---CcEEEEEeCCHHHHHHHHHHHHhh--------------c---c--cC-
Q psy2395 397 KKIKLLEMGTGSGA----IAIAIAIYSKN---KIEIIATDISKFALKIAKKNAKKK--------------L---T--KY- 449 (570)
Q Consensus 397 ~~~~VLDlGcGtG~----i~l~la~~~~~---~~~V~gvDis~~al~~A~~n~~~~--------------~---~--~~- 449 (570)
++.+|||+|||||. +++.++...+. +++|+|+|+|+.|++.|++++... . . ..
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 45799999999998 66667765331 369999999999999999985210 0 0 00
Q ss_pred --------CCCEEEEEcccccc-cccCCCceeEEEECCCCCCCCCcccCCCCcc-ccccccccccCCChHHHHHHHHHHh
Q psy2395 450 --------NIPIKFIKSNWYNN-LQNYKKLFNIIVANPPYIPKGDIHLNKGDLR-FEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 450 --------~~~v~~~~~D~~~~-l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~-~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
..+|.|.++|+.+. .+ ..++||+|+|.- ++. ++| +...++++.+.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~~~-~~~~fDlI~crn-------------vliyf~~-----------~~~~~vl~~~~ 239 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQYN-VPGPFDAIFCRN-------------VMIYFDK-----------TTQEDILRRFV 239 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCC-CCCCEEEEEECS-------------SGGGSCH-----------HHHHHHHHHHG
T ss_pred ceeechhhcccCeEEecccCCCCCC-cCCCeeEEEECC-------------chHhCCH-----------HHHHHHHHHHH
Confidence 12599999999773 22 136899999931 111 111 24578999999
Q ss_pred hccccCeEEEEEEcCC
Q psy2395 520 KYLVKNGLLLIEHGYN 535 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~~ 535 (570)
+.|+|||++++.++..
T Consensus 240 ~~L~pgG~L~lg~sE~ 255 (274)
T 1af7_A 240 PLLKPDGLLFAGHSEN 255 (274)
T ss_dssp GGEEEEEEEEECTTCC
T ss_pred HHhCCCcEEEEEeccc
Confidence 9999999999866543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=9.7e-12 Score=122.13 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=80.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC----CCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY----KKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~----~~~f 471 (570)
.++.+|||+|||+|.++..++..++ +|+|+|+|+.+++.|++++. ..+++++++|+.+..... ...|
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~ 125 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGD 125 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCc
Confidence 4677999999999999999998863 79999999999999998873 236999999997632210 1249
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+|+++..++..+ .+....+++.+.+.|+|||++++.
T Consensus 126 d~v~~~~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~l~i~ 162 (245)
T 3ggd_A 126 ANIYMRTGFHHIP-----------------------VEKRELLGQSLRILLGKQGAMYLI 162 (245)
T ss_dssp CEEEEESSSTTSC-----------------------GGGHHHHHHHHHHHHTTTCEEEEE
T ss_pred cEEEEcchhhcCC-----------------------HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999975543221 013478899999999999987664
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.6e-11 Score=125.04 Aligned_cols=117 Identities=21% Similarity=0.149 Sum_probs=86.0
Q ss_pred HHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
.+.+.+...+. .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.|++++..++ ...+++++.+|+.+.
T Consensus 37 ~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g--~~~V~~vD~s~-~~~~a~~~~~~~~--l~~~v~~~~~d~~~~ 111 (348)
T 2y1w_A 37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG--ARKIYAVEAST-MAQHAEVLVKSNN--LTDRIVVIPGKVEEV 111 (348)
T ss_dssp HHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-HHHHHHHHHHHTT--CTTTEEEEESCTTTC
T ss_pred HHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCC--CCEEEEECCHH-HHHHHHHHHHHcC--CCCcEEEEEcchhhC
Confidence 33344443322 367899999999999999999864 46999999996 8899999998753 335799999999663
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+. .++||+|++++++.... .+.+...+..+.++|+|||.+++.
T Consensus 112 -~~-~~~~D~Ivs~~~~~~~~-----------------------~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 112 -SL-PEQVDIIISEPMGYMLF-----------------------NERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp -CC-SSCEEEEEECCCBTTBT-----------------------TTSHHHHHHHGGGGEEEEEEEESC
T ss_pred -CC-CCceeEEEEeCchhcCC-----------------------hHHHHHHHHHHHhhcCCCeEEEEe
Confidence 22 26899999998754211 012345666788999999999864
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.6e-12 Score=117.43 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 382 ~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
.-+.+...+...+ +++.+|||+|||+|.+++.++...| .++|+|+|+|+.|++.|++|+..++ ...++.+ .|..
T Consensus 35 ~ld~fY~~~~~~l-~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g--~~~~v~~--~d~~ 108 (200)
T 3fzg_A 35 TLNDFYTYVFGNI-KHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLK--TTIKYRF--LNKE 108 (200)
T ss_dssp GHHHHHHHHHHHS-CCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSC--CSSEEEE--ECCH
T ss_pred hHHHHHHHHHhhc-CCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcC--CCccEEE--eccc
Confidence 3345555555554 4577999999999999999988766 5799999999999999999998743 2223555 7775
Q ss_pred cccccCCCceeEEEEC
Q psy2395 462 NNLQNYKKLFNIIVAN 477 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~N 477 (570)
... +.++||+|+++
T Consensus 109 ~~~--~~~~~DvVLa~ 122 (200)
T 3fzg_A 109 SDV--YKGTYDVVFLL 122 (200)
T ss_dssp HHH--TTSEEEEEEEE
T ss_pred ccC--CCCCcChhhHh
Confidence 543 34789999995
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=121.90 Aligned_cols=132 Identities=18% Similarity=0.111 Sum_probs=89.0
Q ss_pred CCCEEEEECCcccHHHHHHH----HhcCCCcEE--EEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-----
Q psy2395 397 KKIKLLEMGTGSGAIAIAIA----IYSKNKIEI--IATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ----- 465 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la----~~~~~~~~V--~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~----- 465 (570)
++.+|||+|||+|.++..++ ..++ ...| +|+|+|+.|++.|++++.........++.+..+++.+...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 130 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK 130 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence 45799999999998765433 3333 4544 9999999999999998864200011234555666643211
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-----------
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----------- 534 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----------- 534 (570)
..+++||+|+++-.++.. .....+++++.++|||||++++....
T Consensus 131 ~~~~~fD~V~~~~~l~~~-------------------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 185 (292)
T 2aot_A 131 KELQKWDFIHMIQMLYYV-------------------------KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKK 185 (292)
T ss_dssp TCCCCEEEEEEESCGGGC-------------------------SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHH
T ss_pred cCCCceeEEEEeeeeeec-------------------------CCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHH
Confidence 224789999995432211 12478899999999999999875321
Q ss_pred -------------CCHHHHHHHHHHCCCeeEEE
Q psy2395 535 -------------NQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 535 -------------~~~~~l~~ll~~~Gf~~i~~ 554 (570)
.....+.++|.++||..+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 186 YGSRFPQDDLCQYITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp HGGGSCCCTTCCCCCHHHHHHHHHHHTCCEEEE
T ss_pred HHHhccCCCcccCCCHHHHHHHHHHCCCceEEE
Confidence 12457888999999987653
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-11 Score=115.28 Aligned_cols=132 Identities=11% Similarity=0.121 Sum_probs=95.5
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..+++.+.. ..++.+|||+|||+|.++..++ .+|+|+|+|+. ++.++++|+.+
T Consensus 56 ~~~~~~l~~--~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~------------------~~~~~~~d~~~- 108 (215)
T 2zfu_A 56 DRIARDLRQ--RPASLVVADFGCGDCRLASSIR------NPVHCFDLASL------------------DPRVTVCDMAQ- 108 (215)
T ss_dssp HHHHHHHHT--SCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS------------------STTEEESCTTS-
T ss_pred HHHHHHHhc--cCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC------------------CceEEEecccc-
Confidence 345555432 2456799999999999988773 47999999998 14578899865
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---CCHHHH
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---NQSNLV 540 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---~~~~~l 540 (570)
++..+++||+|+++..++. . ....+++.+.++|+|||++++.... .....+
T Consensus 109 ~~~~~~~fD~v~~~~~l~~-~-------------------------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 162 (215)
T 2zfu_A 109 VPLEDESVDVAVFCLSLMG-T-------------------------NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTF 162 (215)
T ss_dssp CSCCTTCEEEEEEESCCCS-S-------------------------CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHH
T ss_pred CCCCCCCEeEEEEehhccc-c-------------------------CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHH
Confidence 3443578999999765431 1 2367888999999999999885432 467889
Q ss_pred HHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 541 RKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 541 ~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
.+++.++||..+... ...+.-.++++++
T Consensus 163 ~~~l~~~Gf~~~~~~-~~~~~~~~~~~~k 190 (215)
T 2zfu_A 163 LRAVTKLGFKIVSKD-LTNSHFFLFDFQK 190 (215)
T ss_dssp HHHHHHTTEEEEEEE-CCSTTCEEEEEEE
T ss_pred HHHHHHCCCEEEEEe-cCCCeEEEEEEEe
Confidence 999999999987643 3344445566554
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.1e-11 Score=123.60 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=82.1
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.+++.+++.+ ..+|+|+|+| .+++.|++++..++ ...+++++++|+.+. +.+.++||+|++
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g--~~~v~~vD~s-~~~~~a~~~~~~~~--~~~~i~~~~~d~~~~-~~~~~~~D~Ivs 111 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMS-SIIEMAKELVELNG--FSDKITLLRGKLEDV-HLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESS-THHHHHHHHHHHTT--CTTTEEEEESCTTTS-CCSSSCEEEEEE
T ss_pred CCCEEEEecCccHHHHHHHHHCC--CCEEEEEChH-HHHHHHHHHHHHcC--CCCCEEEEECchhhc-cCCCCcccEEEE
Confidence 56799999999999999999764 3699999999 59999999998753 334699999999663 333468999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
+++..... + ...+..++..+.++|+|||+++
T Consensus 112 ~~~~~~l~----------~------------~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 112 EWMGYFLL----------Y------------ESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBS----------T------------TCCHHHHHHHHHHHEEEEEEEE
T ss_pred eCchhhcc----------c------------HHHHHHHHHHHHhhcCCCeEEE
Confidence 98743211 0 1134678888899999999987
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.24 E-value=5.4e-11 Score=126.47 Aligned_cols=108 Identities=14% Similarity=0.144 Sum_probs=81.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-------HHHHHhhcccCCCCEEEEEccccc-c--cc
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA-------KKNAKKKLTKYNIPIKFIKSNWYN-N--LQ 465 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A-------~~n~~~~~~~~~~~v~~~~~D~~~-~--l~ 465 (570)
.++.+|||+|||+|.+++.+|+..+ ..+|+|+|+++.+++.| ++|+..++.. -.+++++++|.+. . +.
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-~~nV~~i~gD~~~~~~~~~ 318 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-LNNVEFSLKKSFVDNNRVA 318 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-CCCEEEEESSCSTTCHHHH
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-CCceEEEEcCccccccccc
Confidence 5678999999999999999998764 46899999999999999 8888764210 1469999986543 1 11
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
...++||+|++|...+. ......+..+.+.|+|||.+++.
T Consensus 319 ~~~~~FDvIvvn~~l~~--------------------------~d~~~~L~el~r~LKpGG~lVi~ 358 (433)
T 1u2z_A 319 ELIPQCDVILVNNFLFD--------------------------EDLNKKVEKILQTAKVGCKIISL 358 (433)
T ss_dssp HHGGGCSEEEECCTTCC--------------------------HHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccCCCCEEEEeCcccc--------------------------ccHHHHHHHHHHhCCCCeEEEEe
Confidence 11368999999753221 13456778999999999999874
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=131.04 Aligned_cols=150 Identities=15% Similarity=0.224 Sum_probs=103.2
Q ss_pred HHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
.+++.++.... .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++- ......++..+..+.
T Consensus 94 ~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g---~~v~gvD~s~~~~~~a~~~~------~~~~~~~~~~~~~~~ 164 (416)
T 4e2x_A 94 MLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAG---VRHLGFEPSSGVAAKAREKG------IRVRTDFFEKATADD 164 (416)
T ss_dssp HHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTT---CEEEEECCCHHHHHHHHTTT------CCEECSCCSHHHHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcC---CcEEEECCCHHHHHHHHHcC------CCcceeeechhhHhh
Confidence 34444544432 467799999999999999999754 59999999999999998661 111111222222233
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------- 534 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------- 534 (570)
++..+++||+|+++-.+... .....+++.+.++|+|||+++++.+.
T Consensus 165 l~~~~~~fD~I~~~~vl~h~-------------------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~ 219 (416)
T 4e2x_A 165 VRRTEGPANVIYAANTLCHI-------------------------PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVAKTS 219 (416)
T ss_dssp HHHHHCCEEEEEEESCGGGC-------------------------TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHHHTC
T ss_pred cccCCCCEEEEEECChHHhc-------------------------CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhhhcc
Confidence 33334789999996443211 13478999999999999999997653
Q ss_pred -----------CCHHHHHHHHHHCCCeeEEEEe--cCCCCceEEEEE
Q psy2395 535 -----------NQSNLVRKLLFKYGFSDIKSWR--DLSGIERVTQGK 568 (570)
Q Consensus 535 -----------~~~~~l~~ll~~~Gf~~i~~~~--D~~g~~R~~~~~ 568 (570)
.....+..++.++||..+.+.. ...|.-+++.++
T Consensus 220 ~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~ 266 (416)
T 4e2x_A 220 FDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLPVHGGEVRYTLAR 266 (416)
T ss_dssp GGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEECGGGSEEEEEEEE
T ss_pred hhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEccCCCCEEEEEEEe
Confidence 1247899999999999887665 334555555554
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-11 Score=119.97 Aligned_cols=138 Identities=10% Similarity=0.142 Sum_probs=93.9
Q ss_pred CCCCEEEEECCcc------cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE-EEcccccccccCC
Q psy2395 396 EKKIKLLEMGTGS------GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF-IKSNWYNNLQNYK 468 (570)
Q Consensus 396 ~~~~~VLDlGcGt------G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~-~~~D~~~~l~~~~ 468 (570)
+++.+|||+|||+ |. ..+++..+...+|+|+|+|+. + . ++++ +++|+.+... .
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------------~--~v~~~i~gD~~~~~~--~ 121 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------------S--DADSTLIGDCATVHT--A 121 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------------C--SSSEEEESCGGGCCC--S
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------------C--CCEEEEECccccCCc--c
Confidence 5678999999944 76 444555554579999999998 1 1 3678 9999976322 3
Q ss_pred CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCCCHHHHHHHHHHC
Q psy2395 469 KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYNQSNLVRKLLFKY 547 (570)
Q Consensus 469 ~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~l~~ll~~~ 547 (570)
++||+|++|++....... . .....+..++..+++.+.++|+|||+|++.+ .......+.+.+++.
T Consensus 122 ~~fD~Vvsn~~~~~~g~~-------------~-~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~ 187 (290)
T 2xyq_A 122 NKWDLIISDMYDPRTKHV-------------T-KENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHF 187 (290)
T ss_dssp SCEEEEEECCCCCC---C-------------C-SCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTE
T ss_pred CcccEEEEcCCccccccc-------------c-ccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHc
Confidence 689999999642211100 0 0122345677899999999999999999855 444556888899999
Q ss_pred CCeeEEEE-ecCCCCceEEEE
Q psy2395 548 GFSDIKSW-RDLSGIERVTQG 567 (570)
Q Consensus 548 Gf~~i~~~-~D~~g~~R~~~~ 567 (570)
||..+.+. ......+.++++
T Consensus 188 GF~~v~~~asr~~s~e~~lv~ 208 (290)
T 2xyq_A 188 SWWTAFVTNVNASSSEAFLIG 208 (290)
T ss_dssp EEEEEEEEGGGTTSSCEEEEE
T ss_pred CCcEEEEEEcCCCchheEEec
Confidence 99888776 222233445544
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-11 Score=122.80 Aligned_cols=113 Identities=19% Similarity=0.138 Sum_probs=77.1
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC---CCCEEEEEcccccc-----c--cc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY---NIPIKFIKSNWYNN-----L--QN 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~---~~~v~~~~~D~~~~-----l--~~ 466 (570)
++.+|||+|||+|..+..++... ..+|+|+|+|+.|++.|++++...+... ..+++|.++|+... + ..
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~--~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~ 125 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE--IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVF 125 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccc
Confidence 46799999999998666665543 4699999999999999999876531100 00267888887221 1 12
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
.+++||+|+|.-..+.. +. . +....+++++.++|||||++++.++
T Consensus 126 ~~~~FD~V~~~~~lhy~------------------~~-~---~~~~~~l~~~~r~LkpGG~~i~~~~ 170 (302)
T 2vdw_A 126 YFGKFNIIDWQFAIHYS------------------FH-P---RHYATVMNNLSELTASGGKVLITTM 170 (302)
T ss_dssp CSSCEEEEEEESCGGGT------------------CS-T---TTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCeeEEEECchHHHh------------------CC-H---HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 24789999985321100 00 0 1236899999999999999988665
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=5.3e-11 Score=114.00 Aligned_cols=100 Identities=15% Similarity=0.190 Sum_probs=78.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+ . ..+|+|+|+|+.+++.|+++.. ++.++++|+.+ ++..+++||+|+
T Consensus 35 ~~~~~vLdiG~G~G~~~~~l---~--~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~d~~~-~~~~~~~fD~v~ 100 (211)
T 2gs9_A 35 PPGESLLEVGAGTGYWLRRL---P--YPQKVGVEPSEAMLAVGRRRAP--------EATWVRAWGEA-LPFPGESFDVVL 100 (211)
T ss_dssp CCCSEEEEETCTTCHHHHHC---C--CSEEEEECCCHHHHHHHHHHCT--------TSEEECCCTTS-CCSCSSCEEEEE
T ss_pred CCCCeEEEECCCCCHhHHhC---C--CCeEEEEeCCHHHHHHHHHhCC--------CcEEEEccccc-CCCCCCcEEEEE
Confidence 47789999999999998877 2 2389999999999999998762 37899999865 344457899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
++..+...+ ....+++++.++|+|||.+++..+.
T Consensus 101 ~~~~l~~~~-------------------------~~~~~l~~~~~~L~pgG~l~i~~~~ 134 (211)
T 2gs9_A 101 LFTTLEFVE-------------------------DVERVLLEARRVLRPGGALVVGVLE 134 (211)
T ss_dssp EESCTTTCS-------------------------CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EcChhhhcC-------------------------CHHHHHHHHHHHcCCCCEEEEEecC
Confidence 975433211 2368899999999999999987644
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-11 Score=125.32 Aligned_cols=104 Identities=19% Similarity=0.241 Sum_probs=80.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||||||||.+++.+|+.+ ..+|+|||.|+ +++.|+++++.|+ ...+|+++++|+.+. .. +++||+||+
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~--~~~~i~~i~~~~~~~-~l-pe~~Dvivs 155 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNG--LEDRVHVLPGPVETV-EL-PEQVDAIVS 155 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTT--CTTTEEEEESCTTTC-CC-SSCEEEEEC
T ss_pred CCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcC--CCceEEEEeeeeeee-cC-CccccEEEe
Confidence 57799999999999999999876 36999999996 8899999999874 455799999999663 22 378999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
++--. .+.+| ..+..++....++|+|||.++
T Consensus 156 E~~~~----------~l~~e------------~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 156 EWMGY----------GLLHE------------SMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp CCCBT----------TBTTT------------CSHHHHHHHHHHHEEEEEEEE
T ss_pred ecccc----------ccccc------------chhhhHHHHHHhhCCCCceEC
Confidence 64211 00011 134677888889999999987
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.5e-11 Score=110.73 Aligned_cols=138 Identities=12% Similarity=0.117 Sum_probs=91.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCC--------cEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE-Ecccccccc-
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNK--------IEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI-KSNWYNNLQ- 465 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~--------~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~-~~D~~~~l~- 465 (570)
.++.+|||+|||+|.++..+++..+.. .+|+|+|+|+.+ ...+++++ .+|+.+...
T Consensus 21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~~~~~~d~~~~~~~ 86 (196)
T 2nyu_A 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGATFLCPADVTDPRTS 86 (196)
T ss_dssp CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCEEECSCCTTSHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCeEEEeccCCCHHHH
Confidence 567899999999999999999886422 799999999842 11247888 899865321
Q ss_pred ------cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHH
Q psy2395 466 ------NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSN 538 (570)
Q Consensus 466 ------~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~ 538 (570)
..+++||+|++|+++...... .+ ...........+++.+.++|+|||++++.+.. ....
T Consensus 87 ~~~~~~~~~~~fD~V~~~~~~~~~~~~---------~~-----~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~ 152 (196)
T 2nyu_A 87 QRILEVLPGRRADVILSDMAPNATGFR---------DL-----DHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQSR 152 (196)
T ss_dssp HHHHHHSGGGCEEEEEECCCCCCCSCH---------HH-----HHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGGGH
T ss_pred HHHHHhcCCCCCcEEEeCCCCCCCCCc---------cc-----CHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCccHH
Confidence 112589999998754321100 00 00001123368899999999999999987644 3445
Q ss_pred HHHHHHHHCCCeeEEEEecCCCCc
Q psy2395 539 LVRKLLFKYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 539 ~l~~ll~~~Gf~~i~~~~D~~g~~ 562 (570)
.+...+.. .|..+.++++..++.
T Consensus 153 ~~~~~l~~-~f~~v~~~~~~~~~~ 175 (196)
T 2nyu_A 153 RLQRRLTE-EFQNVRIIKPEASRK 175 (196)
T ss_dssp HHHHHHHH-HEEEEEEECCC----
T ss_pred HHHHHHHH-HhcceEEECCcccCc
Confidence 66666665 488888888776553
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.2e-11 Score=119.31 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=83.7
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
...+.+.+......++.+|||+|||+|.++..++...+ +.+|+|+|+|+.+++.|+++.. ++.+..+|+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~d~~~ 141 (269)
T 1p91_A 71 RDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYP--------QVTFCVASSHR 141 (269)
T ss_dssp HHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCT--------TSEEEECCTTS
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhCC--------CcEEEEcchhh
Confidence 34455555544335678999999999999999998764 5799999999999999987642 37899999854
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
++..+++||+|+++.+ ..+++++.++|+|||++++..+.
T Consensus 142 -~~~~~~~fD~v~~~~~--------------------------------~~~l~~~~~~L~pgG~l~~~~~~ 180 (269)
T 1p91_A 142 -LPFSDTSMDAIIRIYA--------------------------------PCKAEELARVVKPGGWVITATPG 180 (269)
T ss_dssp -CSBCTTCEEEEEEESC--------------------------------CCCHHHHHHHEEEEEEEEEEEEC
T ss_pred -CCCCCCceeEEEEeCC--------------------------------hhhHHHHHHhcCCCcEEEEEEcC
Confidence 3444578999999532 01256778899999999987754
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.4e-10 Score=129.65 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=94.0
Q ss_pred CCccccchhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc--CC
Q psy2395 374 SDVLIPRPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK--YN 450 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~--~~ 450 (570)
.+.|.| |.+...++.++..+. .++.+|||+|||+|.++..+++.+++..+|+|+|+|+.|++.|++++...... .+
T Consensus 698 ~gtFsP-PL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~g 776 (950)
T 3htx_A 698 AAFFKP-PLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACN 776 (950)
T ss_dssp CCCSSS-CHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSS
T ss_pred hCcCCc-hHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcC
Confidence 444554 555555555554432 36789999999999999999987633479999999999999999977642110 11
Q ss_pred -CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 451 -IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 451 -~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
.+++|+++|+.+ ++...++||+|+++..+...+ -.....+++.+.++|+|| +++
T Consensus 777 l~nVefiqGDa~d-Lp~~d~sFDlVV~~eVLeHL~-----------------------dp~l~~~L~eI~RvLKPG-~LI 831 (950)
T 3htx_A 777 VKSATLYDGSILE-FDSRLHDVDIGTCLEVIEHME-----------------------EDQACEFGEKVLSLFHPK-LLI 831 (950)
T ss_dssp CSEEEEEESCTTS-CCTTSCSCCEEEEESCGGGSC-----------------------HHHHHHHHHHHHHTTCCS-EEE
T ss_pred CCceEEEECchHh-CCcccCCeeEEEEeCchhhCC-----------------------hHHHHHHHHHHHHHcCCC-EEE
Confidence 369999999966 444457899999964332111 012356889999999999 777
Q ss_pred EEEc
Q psy2395 530 IEHG 533 (570)
Q Consensus 530 ~~~~ 533 (570)
+.++
T Consensus 832 ISTP 835 (950)
T 3htx_A 832 VSTP 835 (950)
T ss_dssp EEEC
T ss_pred EEec
Confidence 6553
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=9.5e-11 Score=119.72 Aligned_cols=115 Identities=17% Similarity=0.256 Sum_probs=85.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc----CCCCEEEEEccccccc-----ccC
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK----YNIPIKFIKSNWYNNL-----QNY 467 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~----~~~~v~~~~~D~~~~l-----~~~ 467 (570)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|+++....... ...++.++++|+.+.. +..
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGR--INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcC--CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 56799999999999999998743 579999999999999999988653100 1236899999997642 112
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.++||+|+++..++.. .........++..+.++|+|||.+++.++.
T Consensus 112 ~~~fD~V~~~~~l~~~---------------------~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYS---------------------FESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TCCEEEEEEETCGGGG---------------------GGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEecchhhc---------------------cCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3589999996533210 011234578999999999999999987764
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-10 Score=114.87 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=106.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
....+|+|+|||+|.++..+++.+| +.+++..|. |.+++.|++++... ...+|+|+.+|+++... ..+|+|+
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~---~~~rv~~~~gD~~~~~~---~~~D~~~ 249 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQ---EEEQIDFQEGDFFKDPL---PEADLYI 249 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCC---CCCSEEE
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhc---ccCceeeecCccccCCC---CCceEEE
Confidence 3456999999999999999999987 689999997 89999999887642 34579999999986422 4589999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cCC-----------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GYN----------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~~----------------- 535 (570)
+.--.+ + ..-+....+++++.+.|+|||.+++.- +..
T Consensus 250 ~~~vlh-------------~----------~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~ 306 (353)
T 4a6d_A 250 LARVLH-------------D----------WADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQ 306 (353)
T ss_dssp EESSGG-------------G----------SCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHS
T ss_pred eeeecc-------------c----------CCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHh
Confidence 832111 0 111234688999999999999987732 111
Q ss_pred ------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 536 ------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 536 ------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+++.+++.++||+.+++++. .+...+++|++
T Consensus 307 ~~g~ert~~e~~~ll~~AGf~~v~v~~~-~~~~~~i~ArK 345 (353)
T 4a6d_A 307 TEGQERTPTHYHMLLSSAGFRDFQFKKT-GAIYDAILARK 345 (353)
T ss_dssp SSCCCCCHHHHHHHHHHHTCEEEEEECC-SSSCEEEEEEC
T ss_pred CCCcCCCHHHHHHHHHHCCCceEEEEEc-CCceEEEEEEe
Confidence 1357889999999999998764 55667888875
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.1e-10 Score=119.06 Aligned_cols=138 Identities=11% Similarity=0.128 Sum_probs=98.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++ +.+++++|+ +.++. +.++... ....+++++.+|+++.++ +||+|+
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~--~~~~~v~~~~~d~~~~~p----~~D~v~ 252 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAP--DVAGRWKVVEGDFLREVP----HADVHV 252 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCG--GGTTSEEEEECCTTTCCC----CCSEEE
T ss_pred cCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--ccccccc--CCCCCeEEEecCCCCCCC----CCcEEE
Confidence 4567999999999999999999886 689999999 45544 3332221 134579999999975433 799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc---C------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG---Y------------------ 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~---~------------------ 534 (570)
++-.++..+ -.....+++++.+.|+|||++++... .
T Consensus 253 ~~~vlh~~~-----------------------d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~~~~~~d~~~~~~~ 309 (348)
T 3lst_A 253 LKRILHNWG-----------------------DEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAAR 309 (348)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCCHHHHHHHHHHHTT
T ss_pred EehhccCCC-----------------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcchhhhcChhhhhcC
Confidence 954332111 12236899999999999999987431 1
Q ss_pred ----CCHHHHHHHHHHCCCeeEEEEecCCCCceEEEE
Q psy2395 535 ----NQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQG 567 (570)
Q Consensus 535 ----~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~ 567 (570)
...+++.+++.++||+.++++. ..+..-++.+
T Consensus 310 ~~~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~ 345 (348)
T 3lst_A 310 TGQERTAAELEPLFTAAGLRLDRVVG-TSSVMSIAVG 345 (348)
T ss_dssp SCCCCBHHHHHHHHHHTTEEEEEEEE-CSSSCEEEEE
T ss_pred CCcCCCHHHHHHHHHHCCCceEEEEE-CCCCcEEEEE
Confidence 1356788999999999999987 4444444443
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-12 Score=128.38 Aligned_cols=95 Identities=18% Similarity=0.327 Sum_probs=70.5
Q ss_pred cccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 377 LIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 377 ~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
+++......+++.+ ...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++|+. ...+++++
T Consensus 12 l~~~~~~~~i~~~~---~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~-----~~~~v~~~ 80 (245)
T 1yub_A 12 LTSEKVLNQIIKQL---NLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK-----LNTRVTLI 80 (245)
T ss_dssp CCCTTTHHHHHHHC---CCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT-----TCSEEEEC
T ss_pred CCCHHHHHHHHHhc---CCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc-----cCCceEEE
Confidence 33333344444443 12466799999999999999999875 689999999999999988775 23469999
Q ss_pred EcccccccccCCCceeEEEECCCCCCC
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANPPYIPK 483 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NPPy~~~ 483 (570)
++|+.+......++| .|++||||...
T Consensus 81 ~~D~~~~~~~~~~~f-~vv~n~Py~~~ 106 (245)
T 1yub_A 81 HQDILQFQFPNKQRY-KIVGNIPYHLS 106 (245)
T ss_dssp CSCCTTTTCCCSSEE-EEEEECCSSSC
T ss_pred ECChhhcCcccCCCc-EEEEeCCcccc
Confidence 999976322112578 89999999854
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.1e-11 Score=120.22 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=61.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++|+..++ ..+++++++|+.+. +. .+||+|+
T Consensus 41 ~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~---~~~v~~~~~D~~~~-~~--~~~D~Vv 111 (299)
T 2h1r_A 41 KSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEG---YNNLEVYEGDAIKT-VF--PKFDVCT 111 (299)
T ss_dssp CTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTT---CCCEEC----CCSS-CC--CCCSEEE
T ss_pred CCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcC---CCceEEEECchhhC-Cc--ccCCEEE
Confidence 46779999999999999999865 3699999999999999999987532 14699999999663 22 4899999
Q ss_pred ECCCCCC
Q psy2395 476 ANPPYIP 482 (570)
Q Consensus 476 ~NPPy~~ 482 (570)
+||||..
T Consensus 112 ~n~py~~ 118 (299)
T 2h1r_A 112 ANIPYKI 118 (299)
T ss_dssp EECCGGG
T ss_pred EcCCccc
Confidence 9999974
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.2e-12 Score=122.45 Aligned_cols=124 Identities=14% Similarity=0.113 Sum_probs=82.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE-cccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK-SNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~-~D~~~~l~~~~~~fD~Iv 475 (570)
++.+|||+|||||.++..+++.+ ..+|+|+|+|+.|++.|+++..........++.+.. .|+ . ...||.+.
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g--~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~d~~~ 108 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNG--AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADF----E--QGRPSFTS 108 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGC----C--SCCCSEEE
T ss_pred CCCEEEEEccCCCHHHHHHHhcC--CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHc----C--cCCCCEEE
Confidence 46699999999999999999874 359999999999999987764421000001111111 111 1 12356666
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----C----------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----N---------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----~---------------- 535 (570)
++..|.. +..++.++.++|+|||.+++.+.+ .
T Consensus 109 ~D~v~~~----------------------------l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~~d~~~~ 160 (232)
T 3opn_A 109 IDVSFIS----------------------------LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGIIRDPKVH 160 (232)
T ss_dssp ECCSSSC----------------------------GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCCCCHHHH
T ss_pred EEEEhhh----------------------------HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCeecCcchh
Confidence 6655442 146788899999999999886421 0
Q ss_pred --CHHHHHHHHHHCCCeeEEEEe
Q psy2395 536 --QSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 536 --~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
..+.+.+++.++||..+.+..
T Consensus 161 ~~~~~~l~~~l~~aGf~v~~~~~ 183 (232)
T 3opn_A 161 QMTIEKVLKTATQLGFSVKGLTF 183 (232)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEEEEE
Confidence 134678888999999877654
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.15 E-value=4e-11 Score=121.21 Aligned_cols=79 Identities=16% Similarity=0.281 Sum_probs=65.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++..++ ...+++++++|+.+. +. .+||+|+
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~~~~v~~~~~D~~~~-~~--~~fD~vv 98 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGTP--VASKLQVLVGDVLKT-DL--PFFDTCV 98 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTST--TGGGEEEEESCTTTS-CC--CCCSEEE
T ss_pred CCCCEEEEEcCcccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHhcC--CCCceEEEEcceecc-cc--hhhcEEE
Confidence 467799999999999999999875 589999999999999999986421 123699999999763 22 3799999
Q ss_pred ECCCCCC
Q psy2395 476 ANPPYIP 482 (570)
Q Consensus 476 ~NPPy~~ 482 (570)
+|+||..
T Consensus 99 ~nlpy~~ 105 (285)
T 1zq9_A 99 ANLPYQI 105 (285)
T ss_dssp EECCGGG
T ss_pred EecCccc
Confidence 9999974
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.3e-10 Score=113.76 Aligned_cols=108 Identities=10% Similarity=0.066 Sum_probs=81.6
Q ss_pred CCCEEEEECCcc---cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---------
Q psy2395 397 KKIKLLEMGTGS---GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--------- 464 (570)
Q Consensus 397 ~~~~VLDlGcGt---G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--------- 464 (570)
...+|||||||+ |.++..+++..+ +.+|+++|+||.|++.|++++.. ..+++++++|+.+..
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~-----~~~v~~~~~D~~~~~~~~~~~~~~ 150 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK-----DPNTAVFTADVRDPEYILNHPDVR 150 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT-----CTTEEEEECCTTCHHHHHHSHHHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC-----CCCeEEEEeeCCCchhhhccchhh
Confidence 347999999999 998877766665 58999999999999999998852 346999999997531
Q ss_pred ccCC-CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 465 QNYK-KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 465 ~~~~-~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
...+ .+||+|+++--++..+ + +....+++++.+.|+|||+|++...
T Consensus 151 ~~~d~~~~d~v~~~~vlh~~~---------------------d--~~~~~~l~~~~~~L~pGG~l~i~~~ 197 (274)
T 2qe6_A 151 RMIDFSRPAAIMLVGMLHYLS---------------------P--DVVDRVVGAYRDALAPGSYLFMTSL 197 (274)
T ss_dssp HHCCTTSCCEEEETTTGGGSC---------------------T--TTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ccCCCCCCEEEEEechhhhCC---------------------c--HHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 0111 4799999975432111 0 0247899999999999999988653
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-10 Score=113.32 Aligned_cols=135 Identities=11% Similarity=-0.001 Sum_probs=95.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc-cCCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT-KYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
+.+.+|||+|||+|.++..+++. + .+|+++|+|+.+++.|++++..... ....+++++.+|+.+.+ ++||+|
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~I 143 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLI 143 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEE
Confidence 45679999999999999998876 3 6999999999999999987643100 12457999999997654 689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHHH---HHHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLVR---KLLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l~---~ll~~~Gf 549 (570)
++|.+ +| ..+++.+.+.|+|||++++..+. .....+. +.+.+ -|
T Consensus 144 i~d~~----------------dp--------------~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~-~F 192 (262)
T 2cmg_A 144 FCLQE----------------PD--------------IHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGG-VF 192 (262)
T ss_dssp EESSC----------------CC--------------HHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHT-TC
T ss_pred EECCC----------------Ch--------------HHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHH-hC
Confidence 99742 01 23788899999999999986543 2333333 33433 37
Q ss_pred eeEEEEecC---CCCceEEEEE
Q psy2395 550 SDIKSWRDL---SGIERVTQGK 568 (570)
Q Consensus 550 ~~i~~~~D~---~g~~R~~~~~ 568 (570)
..+..+... .|..-+++|.
T Consensus 193 ~~~~~~~~~vP~~g~~~~~~as 214 (262)
T 2cmg_A 193 SVAMPFVAPLRILSNKGYIYAS 214 (262)
T ss_dssp SEEEEECCTTCTTCCEEEEEEE
T ss_pred CceEEEEEccCCCcccEEEEee
Confidence 777666543 4555555554
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=115.67 Aligned_cols=111 Identities=16% Similarity=0.270 Sum_probs=82.1
Q ss_pred HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc
Q psy2395 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ 465 (570)
Q Consensus 386 l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~ 465 (570)
+.+.+.... +++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++.. . .++++|+.+ ++
T Consensus 44 ~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~------~---~~~~~d~~~-~~ 109 (260)
T 2avn_A 44 IGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV------K---NVVEAKAED-LP 109 (260)
T ss_dssp HHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC------S---CEEECCTTS-CC
T ss_pred HHHHHHHhc-CCCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC------C---CEEECcHHH-CC
Confidence 334443333 36789999999999999999865 3689999999999999998753 1 188899865 34
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
..+++||+|+++.+.... . .....+++++.++|+|||.+++.++.
T Consensus 110 ~~~~~fD~v~~~~~~~~~--------------------~----~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 110 FPSGAFEAVLALGDVLSY--------------------V----ENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp SCTTCEEEEEECSSHHHH--------------------C----SCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCCCEEEEEEcchhhhc--------------------c----ccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 335789999996432100 0 01478899999999999999987654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-11 Score=126.91 Aligned_cols=82 Identities=13% Similarity=0.075 Sum_probs=67.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh--cccCCCCEEEEEcccccccccC-CCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK--LTKYNIPIKFIKSNWYNNLQNY-KKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~--~~~~~~~v~~~~~D~~~~l~~~-~~~fD 472 (570)
.++.+|||+|||+|..++.+++.+ .+|+|+|+|+.+++.|+.|+..+ + . .+++++++|+.+.++.. ..+||
T Consensus 92 ~~g~~VLDLgcG~G~~al~LA~~g---~~V~~VD~s~~~l~~Ar~N~~~~~~g--l-~~i~~i~~Da~~~L~~~~~~~fD 165 (410)
T 3ll7_A 92 REGTKVVDLTGGLGIDFIALMSKA---SQGIYIERNDETAVAARHNIPLLLNE--G-KDVNILTGDFKEYLPLIKTFHPD 165 (410)
T ss_dssp CTTCEEEESSCSSSHHHHHHHTTC---SEEEEEESCHHHHHHHHHHHHHHSCT--T-CEEEEEESCGGGSHHHHHHHCCS
T ss_pred CCCCEEEEeCCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHhHHHhccC--C-CcEEEEECcHHHhhhhccCCCce
Confidence 347899999999999999998653 69999999999999999999874 2 1 36999999998754431 25799
Q ss_pred EEEECCCCCCC
Q psy2395 473 IIVANPPYIPK 483 (570)
Q Consensus 473 ~Iv~NPPy~~~ 483 (570)
+|++||||...
T Consensus 166 vV~lDPPrr~~ 176 (410)
T 3ll7_A 166 YIYVDPARRSG 176 (410)
T ss_dssp EEEECCEEC--
T ss_pred EEEECCCCcCC
Confidence 99999999863
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=126.16 Aligned_cols=160 Identities=14% Similarity=0.163 Sum_probs=103.3
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC------------CcEEEEEeCCHHHHHHHHHH
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN------------KIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~------------~~~V~gvDis~~al~~A~~n 441 (570)
..+|+|++..+.|++.+. +.++.+|+|.+||||.+.+.+.+.... ...++|+|+++.++.+|+.|
T Consensus 197 GqfyTP~~Vv~lmv~l~~---p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mN 273 (530)
T 3ufb_A 197 GEFYTPRPVVRFMVEVMD---PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMN 273 (530)
T ss_dssp CCCCCCHHHHHHHHHHHC---CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHH
T ss_pred ceECCcHHHHHHHHHhhc---cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHH
Confidence 356889999999988763 345679999999999999887654311 24699999999999999999
Q ss_pred HHhhcccCCCCEEEEEccccccc-cc--CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNL-QN--YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l-~~--~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
+..++. ....+.++|.+... .. ...+||+|++||||.......... ++ |.. .... .....+++.+
T Consensus 274 l~lhg~---~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~---~~-~~~--~~~~---~~~~~Fl~~~ 341 (530)
T 3ufb_A 274 LLLHGL---EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILG---NF-PED--MQTA---ETAMLFLQLI 341 (530)
T ss_dssp HHHHTC---SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHT---TS-CGG--GCCC---BHHHHHHHHH
T ss_pred HHhcCC---ccccccccccccCchhhhcccccceEEEecCCCCccccccccc---cC-chh--cccc---hhHHHHHHHH
Confidence 987532 23567888876421 11 124799999999997432211000 00 000 0001 1123455555
Q ss_pred hhccc-------cCeEEEEEEcCC-----C-HHHHHHHHHHCC
Q psy2395 519 SKYLV-------KNGLLLIEHGYN-----Q-SNLVRKLLFKYG 548 (570)
Q Consensus 519 ~~~Lk-------pgG~l~~~~~~~-----~-~~~l~~ll~~~G 548 (570)
.+.|+ |||++.+++|.+ . ...+++.|.+.+
T Consensus 342 l~~Lk~~~~~l~~gGr~avVlP~g~Lf~~~~~~~iRk~Lle~~ 384 (530)
T 3ufb_A 342 MRKLKRPGHGSDNGGRAAVVVPNGTLFSDGISARIKEELLKNF 384 (530)
T ss_dssp HHHBCCTTSSSSSCCEEEEEEEHHHHHCCTHHHHHHHHHHHHS
T ss_pred HHHhhhhhhccCCCceEEEEecchhhhccchHHHHHHHHhhcC
Confidence 55565 799999988642 2 345777766543
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-10 Score=114.86 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
...+++.+ ...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++.. ..+++++++|+.+
T Consensus 18 ~~~iv~~~---~~~~~~~VLEIG~G~G~lt~~La~~~---~~V~avEid~~~~~~~~~~~~~-----~~~v~~i~~D~~~ 86 (255)
T 3tqs_A 18 LQKIVSAI---HPQKTDTLVEIGPGRGALTDYLLTEC---DNLALVEIDRDLVAFLQKKYNQ-----QKNITIYQNDALQ 86 (255)
T ss_dssp HHHHHHHH---CCCTTCEEEEECCTTTTTHHHHTTTS---SEEEEEECCHHHHHHHHHHHTT-----CTTEEEEESCTTT
T ss_pred HHHHHHhc---CCCCcCEEEEEcccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHhh-----CCCcEEEEcchHh
Confidence 34444443 23467899999999999999999764 6899999999999999999863 3469999999977
Q ss_pred cc-ccC--CCceeEEEECCCCCC
Q psy2395 463 NL-QNY--KKLFNIIVANPPYIP 482 (570)
Q Consensus 463 ~l-~~~--~~~fD~Iv~NPPy~~ 482 (570)
.. +.. .++|| ||+||||..
T Consensus 87 ~~~~~~~~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 87 FDFSSVKTDKPLR-VVGNLPYNI 108 (255)
T ss_dssp CCGGGSCCSSCEE-EEEECCHHH
T ss_pred CCHHHhccCCCeE-EEecCCccc
Confidence 42 221 25788 999999963
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.7e-10 Score=116.39 Aligned_cols=122 Identities=15% Similarity=0.148 Sum_probs=84.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE-Eccccccc--ccCCCceeE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI-KSNWYNNL--QNYKKLFNI 473 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~-~~D~~~~l--~~~~~~fD~ 473 (570)
++.+|||+|||||.++..+++.+ ..+|+|+|+|+.|++.+.++. .++... ..|+.... ..+..+||+
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~g--a~~V~aVDvs~~mL~~a~r~~--------~rv~~~~~~ni~~l~~~~l~~~~fD~ 154 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNG--AKLVYAVDVGTNQLVWKLRQD--------DRVRSMEQYNFRYAEPVDFTEGLPSF 154 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT--CSEEEEECSSSSCSCHHHHTC--------TTEEEECSCCGGGCCGGGCTTCCCSE
T ss_pred cccEEEecCCCccHHHHHHHhCC--CCEEEEEECCHHHHHHHHHhC--------cccceecccCceecchhhCCCCCCCE
Confidence 56799999999999999998764 469999999999999865432 123222 23442211 111235999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-C-----------------
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-N----------------- 535 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~----------------- 535 (570)
|++|-.|+. +..++.++.++|+|||.+++.+.+ .
T Consensus 155 v~~d~sf~s----------------------------l~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~G~vrd~~ 206 (291)
T 3hp7_A 155 ASIDVSFIS----------------------------LNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESS 206 (291)
T ss_dssp EEECCSSSC----------------------------GGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-CCCCCCHH
T ss_pred EEEEeeHhh----------------------------HHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCCCccCCHH
Confidence 999866542 146788899999999999876321 0
Q ss_pred ----CHHHHHHHHHHCCCeeEEEEe
Q psy2395 536 ----QSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 536 ----~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
..+.+..++.++||....+..
T Consensus 207 ~~~~~~~~v~~~~~~~Gf~v~~~~~ 231 (291)
T 3hp7_A 207 IHEKVLETVTAFAVDYGFSVKGLDF 231 (291)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 125577888899999776544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.7e-10 Score=114.05 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=68.0
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..+++.+ ...++ +|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++. ..+++++++|+.+.
T Consensus 37 ~~Iv~~~---~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~------~~~v~vi~~D~l~~ 103 (271)
T 3fut_A 37 RRIVEAA---RPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS------GLPVRLVFQDALLY 103 (271)
T ss_dssp HHHHHHH---CCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT------TSSEEEEESCGGGS
T ss_pred HHHHHhc---CCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC------CCCEEEEECChhhC
Confidence 4444443 23456 99999999999999999765 589999999999999999875 24699999999764
Q ss_pred cccCCCceeEEEECCCCCCC
Q psy2395 464 LQNYKKLFNIIVANPPYIPK 483 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~ 483 (570)
.......||.|++|+||...
T Consensus 104 ~~~~~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 104 PWEEVPQGSLLVANLPYHIA 123 (271)
T ss_dssp CGGGSCTTEEEEEEECSSCC
T ss_pred ChhhccCccEEEecCccccc
Confidence 32211368999999999743
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.3e-10 Score=115.96 Aligned_cols=79 Identities=27% Similarity=0.233 Sum_probs=66.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.+++++.. ..+++++++|+.+.. ....+||+|+
T Consensus 49 ~~~~~VLEIG~G~G~lT~~La~~~---~~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~~~-~~~~~fD~Iv 119 (295)
T 3gru_A 49 TKDDVVLEIGLGKGILTEELAKNA---KKVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALKVD-LNKLDFNKVV 119 (295)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTTSC-GGGSCCSEEE
T ss_pred CCcCEEEEECCCchHHHHHHHhcC---CEEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhhCC-cccCCccEEE
Confidence 467899999999999999999874 6899999999999999999873 346999999997632 2235799999
Q ss_pred ECCCCCCC
Q psy2395 476 ANPPYIPK 483 (570)
Q Consensus 476 ~NPPy~~~ 483 (570)
+|+||...
T Consensus 120 ~NlPy~is 127 (295)
T 3gru_A 120 ANLPYQIS 127 (295)
T ss_dssp EECCGGGH
T ss_pred EeCccccc
Confidence 99999643
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=108.19 Aligned_cols=86 Identities=15% Similarity=0.236 Sum_probs=66.1
Q ss_pred HHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc
Q psy2395 388 DLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN 466 (570)
Q Consensus 388 ~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~ 466 (570)
+.++... ..++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++.. ..+++++++|+.+....
T Consensus 20 ~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~~ 91 (244)
T 1qam_A 20 DKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFKFP 91 (244)
T ss_dssp HHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCCCC
T ss_pred HHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc-----CCCeEEEEChHHhCCcc
Confidence 4444332 2467799999999999999999875 6899999999999999998863 24699999999763221
Q ss_pred CCCceeEEEECCCCCC
Q psy2395 467 YKKLFNIIVANPPYIP 482 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~ 482 (570)
....| .|++||||..
T Consensus 92 ~~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 92 KNQSY-KIFGNIPYNI 106 (244)
T ss_dssp SSCCC-EEEEECCGGG
T ss_pred cCCCe-EEEEeCCccc
Confidence 12345 7999999963
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-11 Score=117.08 Aligned_cols=82 Identities=15% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCH-------HHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC-
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISK-------FALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK- 468 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~-------~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~- 468 (570)
++.+|||+|||+|.+++.+|..+ ++|+|+|+|+ .+++.|++|+..++. ..+++++++|+.+.++...
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g---~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~--~~ri~~~~~d~~~~l~~~~~ 157 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLG---LTVTAFEQHPAVACLLSDGIRRALLNPETQDT--AARINLHFGNAAEQMPALVK 157 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTT---CCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH--HTTEEEEESCHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhC---CEEEEEECChhhhHHHHHHHHHHHhHHHhhCC--ccCeEEEECCHHHHHHhhhc
Confidence 46799999999999999999753 6899999999 999999999887532 2359999999977544222
Q ss_pred --CceeEEEECCCCCCC
Q psy2395 469 --KLFNIIVANPPYIPK 483 (570)
Q Consensus 469 --~~fD~Iv~NPPy~~~ 483 (570)
++||+|++||||...
T Consensus 158 ~~~~fD~V~~dP~~~~~ 174 (258)
T 2r6z_A 158 TQGKPDIVYLDPMYPER 174 (258)
T ss_dssp HHCCCSEEEECCCC---
T ss_pred cCCCccEEEECCCCCCc
Confidence 589999999999653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=9.2e-10 Score=115.33 Aligned_cols=127 Identities=19% Similarity=0.135 Sum_probs=95.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.++ ..+++++|+ +.+++.|++. .+++++.+|+++.++ . ||+|+
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~~~---~-~D~v~ 272 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPPL---------SGIEHVGGDMFASVP---Q-GDAMI 272 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTTCCC---C-EEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhhc---------CCCEEEeCCcccCCC---C-CCEEE
Confidence 4567999999999999999999886 589999999 9999877531 249999999977332 3 99999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE---EcCC-----------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE---HGYN----------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~---~~~~----------------- 535 (570)
++-.++..+ -.....+++++.+.|+|||++++. .+..
T Consensus 273 ~~~~lh~~~-----------------------d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 329 (372)
T 1fp1_D 273 LKAVCHNWS-----------------------DEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLM 329 (372)
T ss_dssp EESSGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred EecccccCC-----------------------HHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHH
Confidence 964332111 112348999999999999999874 2211
Q ss_pred ---------CHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 536 ---------QSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 536 ---------~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
..+++.+++.++||..++++.-..|
T Consensus 330 ~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~~~ 363 (372)
T 1fp1_D 330 FITVGGRERTEKQYEKLSKLSGFSKFQVACRAFN 363 (372)
T ss_dssp HHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETT
T ss_pred HhccCCccCCHHHHHHHHHHCCCceEEEEEcCCC
Confidence 1356778899999999988774444
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=113.06 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=95.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|||+|||+|.++..+++.+| +.+++++|+ |.+++.|+.+ .+++|+.+|+++.++ .. |+|+
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~~p--~~--D~v~ 266 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPAF---------SGVEHLGGDMFDGVP--KG--DAIF 266 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC---------TTEEEEECCTTTCCC--CC--SEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhhc---------CCCEEEecCCCCCCC--CC--CEEE
Confidence 4567999999999999999999886 689999999 9888776532 359999999987443 23 9999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cC------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GY------------------ 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~------------------ 534 (570)
+.-..+.- ..+....+++++.+.|+|||++++.- +.
T Consensus 267 ~~~vlh~~-----------------------~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~ 323 (368)
T 3reo_A 267 IKWICHDW-----------------------SDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALM 323 (368)
T ss_dssp EESCGGGB-----------------------CHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHH
T ss_pred EechhhcC-----------------------CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHH
Confidence 85332210 11234688999999999999987732 11
Q ss_pred ---------CCHHHHHHHHHHCCCeeEEEEecCCC
Q psy2395 535 ---------NQSNLVRKLLFKYGFSDIKSWRDLSG 560 (570)
Q Consensus 535 ---------~~~~~l~~ll~~~Gf~~i~~~~D~~g 560 (570)
...+++.+++.++||+.+++..-..+
T Consensus 324 ~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~~~ 358 (368)
T 3reo_A 324 LAYNPGGKERTEKEFQALAMASGFRGFKVASCAFN 358 (368)
T ss_dssp HHHSSBCCCCCHHHHHHHHHHTTCCEEEEEEEETT
T ss_pred HhhcCCCccCCHHHHHHHHHHCCCeeeEEEEeCCC
Confidence 11456889999999999988765443
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.7e-10 Score=114.23 Aligned_cols=134 Identities=14% Similarity=0.174 Sum_probs=99.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++. .+++++.+|+++.++ .||+|+
T Consensus 187 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---------~~v~~~~~d~~~~~p----~~D~v~ 251 (352)
T 1fp2_A 187 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSGS---------NNLTYVGGDMFTSIP----NADAVL 251 (352)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCB---------TTEEEEECCTTTCCC----CCSEEE
T ss_pred ccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhcccC---------CCcEEEeccccCCCC----CccEEE
Confidence 3567999999999999999999876 579999999 9999877641 139999999977432 399999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc---CeEEEEEE---cCC--------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK---NGLLLIEH---GYN-------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp---gG~l~~~~---~~~-------------- 535 (570)
++-.++..+ -.....+++++.+.|+| ||++++.. +..
T Consensus 252 ~~~~lh~~~-----------------------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d 308 (352)
T 1fp2_A 252 LKYILHNWT-----------------------DKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMD 308 (352)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHH
T ss_pred eehhhccCC-----------------------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhcc
Confidence 954332111 11234899999999999 99987742 211
Q ss_pred -----------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 536 -----------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 536 -----------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
..+++.++++++||..++++. ..|...++.++
T Consensus 309 ~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~ 351 (352)
T 1fp2_A 309 VNMACLNGKERNEEEWKKLFIEAGFQHYKISP-LTGFLSLIEIY 351 (352)
T ss_dssp HHGGGGTCCCEEHHHHHHHHHHTTCCEEEEEE-EETTEEEEEEE
T ss_pred HHHHhccCCCCCHHHHHHHHHHCCCCeeEEEe-cCCCcEEEEEe
Confidence 135678899999999998876 45555555543
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=114.20 Aligned_cols=105 Identities=17% Similarity=0.216 Sum_probs=76.8
Q ss_pred HHHHhhcCCCCCEEEEECCc------ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 388 DLIVKKTFEKKIKLLEMGTG------SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 388 ~~~~~~~~~~~~~VLDlGcG------tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
+.++..+..++.+||||||| +|..++.+++.+.++++|+|+|+|+.|. . ...+++|+++|+.
T Consensus 207 e~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~-----~~~rI~fv~GDa~ 274 (419)
T 3sso_A 207 DRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------V-----DELRIRTIQGDQN 274 (419)
T ss_dssp HHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------G-----CBTTEEEEECCTT
T ss_pred HHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------h-----cCCCcEEEEeccc
Confidence 44444344567899999999 7777887776542368999999999972 1 2346999999996
Q ss_pred cccccC------CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 462 NNLQNY------KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 462 ~~l~~~------~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+. +.. .++||+|++|--.. ...+..+++++.++|||||++++.
T Consensus 275 dl-pf~~~l~~~d~sFDlVisdgsH~--------------------------~~d~~~aL~el~rvLKPGGvlVi~ 323 (419)
T 3sso_A 275 DA-EFLDRIARRYGPFDIVIDDGSHI--------------------------NAHVRTSFAALFPHVRPGGLYVIE 323 (419)
T ss_dssp CH-HHHHHHHHHHCCEEEEEECSCCC--------------------------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cc-chhhhhhcccCCccEEEECCccc--------------------------chhHHHHHHHHHHhcCCCeEEEEE
Confidence 52 222 37899999963110 134578899999999999999984
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-10 Score=112.54 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=67.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---ccCC-Cce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---QNYK-KLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---~~~~-~~f 471 (570)
.++.+|||+|||+|.++..+++.++ +.+|+|+|+|+.|++.|++|+..+ +.+++++++|+.+.. .... .+|
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~----g~~v~~v~~d~~~l~~~l~~~g~~~~ 99 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFLLKTLGIEKV 99 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEECCHHHHHHHHHhcCCCCC
Confidence 4678999999999999999999875 589999999999999999999864 357999999985531 1111 479
Q ss_pred eEEEECCCCC
Q psy2395 472 NIIVANPPYI 481 (570)
Q Consensus 472 D~Iv~NPPy~ 481 (570)
|.|++|||+.
T Consensus 100 D~Vl~D~gvS 109 (301)
T 1m6y_A 100 DGILMDLGVS 109 (301)
T ss_dssp EEEEEECSCC
T ss_pred CEEEEcCccc
Confidence 9999999863
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.7e-09 Score=109.70 Aligned_cols=125 Identities=18% Similarity=0.168 Sum_probs=93.7
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|||+|||+|.++..+++.+| +.+++++|+ |.+++.|+. ..+++|+.+|+++.++ .+ |+|+
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~~~p--~~--D~v~ 264 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFKEVP--SG--DTIL 264 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTTCCC--CC--SEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCCCCC--CC--CEEE
Confidence 4567999999999999999999886 689999999 888877653 2369999999987443 23 9999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE---cC------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH---GY------------------ 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~---~~------------------ 534 (570)
+.-..+. -..+....+++++.+.|+|||++++.- +.
T Consensus 265 ~~~vlh~-----------------------~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m 321 (364)
T 3p9c_A 265 MKWILHD-----------------------WSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIM 321 (364)
T ss_dssp EESCGGG-----------------------SCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHH
T ss_pred ehHHhcc-----------------------CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHH
Confidence 8432210 011344689999999999999997732 11
Q ss_pred ---------CCHHHHHHHHHHCCCeeEEEEecC
Q psy2395 535 ---------NQSNLVRKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 535 ---------~~~~~l~~ll~~~Gf~~i~~~~D~ 558 (570)
...+++.++++++||+.+++..-.
T Consensus 322 ~~~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~~ 354 (364)
T 3p9c_A 322 LAHNPGGRERYEREFQALARGAGFTGVKSTYIY 354 (364)
T ss_dssp HHHCSSCCCCBHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HhcccCCccCCHHHHHHHHHHCCCceEEEEEcC
Confidence 013567889999999999887643
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=106.61 Aligned_cols=88 Identities=10% Similarity=0.133 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
-+.+...+.... .++.+|||||||+|-+++.++...+ ..+|+|+|+|+.+++.++.|+.. ++.+..+.+.|...
T Consensus 119 lD~fY~~i~~~i-~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~----~g~~~~~~v~D~~~ 192 (281)
T 3lcv_B 119 LDEFYRELFRHL-PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTR----LNVPHRTNVADLLE 192 (281)
T ss_dssp HHHHHHHHGGGS-CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHH----TTCCEEEEECCTTT
T ss_pred HHHHHHHHHhcc-CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHh----cCCCceEEEeeecc
Confidence 344555555544 4477999999999999999987755 68999999999999999999987 45668999999976
Q ss_pred ccccCCCceeEEEECC
Q psy2395 463 NLQNYKKLFNIIVANP 478 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NP 478 (570)
..+ .++||+++++-
T Consensus 193 ~~p--~~~~DvaL~lk 206 (281)
T 3lcv_B 193 DRL--DEPADVTLLLK 206 (281)
T ss_dssp SCC--CSCCSEEEETT
T ss_pred cCC--CCCcchHHHHH
Confidence 554 47899999963
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.9e-09 Score=109.14 Aligned_cols=133 Identities=16% Similarity=0.211 Sum_probs=98.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
+..+|||+|||+|.++..+++.++ +.+++++|+ +.+++.|++ ..+++++.+|+++..+ .||+|++
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~~~~----~~D~v~~ 257 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFKSIP----SADAVLL 257 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTTCCC----CCSEEEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc---------CCCcEEEeCccCCCCC----CceEEEE
Confidence 557999999999999999999886 579999999 788876653 1249999999987322 4999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc---CeEEEEEE---cCC---------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK---NGLLLIEH---GYN--------------- 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp---gG~l~~~~---~~~--------------- 535 (570)
+-.++..+ -.....+++++.+.|+| ||++++.. +..
T Consensus 258 ~~vlh~~~-----------------------d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~ 314 (358)
T 1zg3_A 258 KWVLHDWN-----------------------DEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDL 314 (358)
T ss_dssp ESCGGGSC-----------------------HHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHH
T ss_pred cccccCCC-----------------------HHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCH
Confidence 65433111 11235899999999999 99887732 211
Q ss_pred -----------CHHHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 536 -----------QSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 536 -----------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
..+++.+++.++||+.++++. ..+...++.++
T Consensus 315 ~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~-~~~~~~vie~~ 357 (358)
T 1zg3_A 315 VMLTMFLGKERTKQEWEKLIYDAGFSSYKITP-ISGFKSLIEVY 357 (358)
T ss_dssp HHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE-ETTTEEEEEEE
T ss_pred HHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe-cCCCcEEEEEe
Confidence 235677889999999998887 45655555543
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.93 E-value=7.7e-09 Score=102.66 Aligned_cols=148 Identities=12% Similarity=0.171 Sum_probs=101.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHh-------cCC----CcEEEEEeCCH---HHHH-----------HHHHHHHhh-----
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIY-------SKN----KIEIIATDISK---FALK-----------IAKKNAKKK----- 445 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~-------~~~----~~~V~gvDis~---~al~-----------~A~~n~~~~----- 445 (570)
.++.+|||+|||+|..++.+++. .|. ..+++++|..| +.+. .|+.++...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~ 138 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP 138 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence 34579999999999999887664 332 25899999987 4433 566665531
Q ss_pred -----ccc-CCCCEEEEEcccccccccCCC----ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHH
Q psy2395 446 -----LTK-YNIPIKFIKSNWYNNLQNYKK----LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIV 515 (570)
Q Consensus 446 -----~~~-~~~~v~~~~~D~~~~l~~~~~----~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l 515 (570)
... ...+++++.+|+.+.++.... +||+|+.+| |.+... |.+ ....++
T Consensus 139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~-fsp~~~-----------p~l----------w~~~~l 196 (257)
T 2qy6_A 139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG-FAPAKN-----------PDM----------WTQNLF 196 (257)
T ss_dssp EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS-SCTTTC-----------GGG----------CCHHHH
T ss_pred chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC-CCcccC-----------hhh----------cCHHHH
Confidence 001 124688999999876665433 799999986 222211 100 125788
Q ss_pred HHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 516 KNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 516 ~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
+.+.+.|+|||+++. +.....+++.|..+||.+. ..+...++..++.|.+
T Consensus 197 ~~l~~~L~pGG~l~t---ysaa~~vrr~L~~aGF~v~-~~~g~~~kr~m~~a~~ 246 (257)
T 2qy6_A 197 NAMARLARPGGTLAT---FTSAGFVRRGLQEAGFTMQ-KRKGFGRKREMLCGVM 246 (257)
T ss_dssp HHHHHHEEEEEEEEE---SCCBHHHHHHHHHHTEEEE-EECCSTTCCCEEEEEE
T ss_pred HHHHHHcCCCcEEEE---EeCCHHHHHHHHHCCCEEE-eCCCCCCCCceEEEEe
Confidence 899999999999874 3344578889999999854 4555666667777765
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.6e-09 Score=107.36 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=62.2
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCC-CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-ccCCC----
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKN-KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QNYKK---- 469 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~-~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~~~~---- 469 (570)
.++.+|||+|||+|.++..++..+.. ..+|+|+|+|+.+++.++++. . .+++++++|+.+.. +....
T Consensus 41 ~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~------~~v~~i~~D~~~~~~~~~~~~~~~ 113 (279)
T 3uzu_A 41 ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-G------ELLELHAGDALTFDFGSIARPGDE 113 (279)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-G------GGEEEEESCGGGCCGGGGSCSSSS
T ss_pred CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-C------CCcEEEECChhcCChhHhcccccC
Confidence 46789999999999999999987642 244999999999999999984 1 24899999997632 21111
Q ss_pred ceeEEEECCCCCC
Q psy2395 470 LFNIIVANPPYIP 482 (570)
Q Consensus 470 ~fD~Iv~NPPy~~ 482 (570)
..+.||+|+||..
T Consensus 114 ~~~~vv~NlPY~i 126 (279)
T 3uzu_A 114 PSLRIIGNLPYNI 126 (279)
T ss_dssp CCEEEEEECCHHH
T ss_pred CceEEEEccCccc
Confidence 3468999999964
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=4.6e-09 Score=103.88 Aligned_cols=77 Identities=16% Similarity=0.205 Sum_probs=61.3
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc-ccCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-QNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l-~~~~~~fD~I 474 (570)
.++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.++++ . ..+++++++|+.+.. +...+.| .|
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~~--~~~v~avEid~~~~~~~~~~-~------~~~v~~i~~D~~~~~~~~~~~~~-~v 99 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQHP--LKKLYVIELDREMVENLKSI-G------DERLEVINEDASKFPFCSLGKEL-KV 99 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTSC--CSEEEEECCCHHHHHHHTTS-C------CTTEEEECSCTTTCCGGGSCSSE-EE
T ss_pred CCcCEEEEEcCchHHHHHHHHHcC--CCeEEEEECCHHHHHHHHhc-c------CCCeEEEEcchhhCChhHccCCc-EE
Confidence 467799999999999999999763 47999999999999999877 2 236999999997632 2211234 89
Q ss_pred EECCCCCC
Q psy2395 475 VANPPYIP 482 (570)
Q Consensus 475 v~NPPy~~ 482 (570)
++||||..
T Consensus 100 v~NlPy~i 107 (249)
T 3ftd_A 100 VGNLPYNV 107 (249)
T ss_dssp EEECCTTT
T ss_pred EEECchhc
Confidence 99999963
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.3e-10 Score=111.14 Aligned_cols=109 Identities=14% Similarity=0.114 Sum_probs=72.1
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE--EcccccccccCCCce
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI--KSNWYNNLQNYKKLF 471 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~--~~D~~~~l~~~~~~f 471 (570)
...++.+|||+|||+|.++..+++. .+|+|||+++ ++..++++... ....+.++.++ ++|+.+ ++ +++|
T Consensus 71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~-~~~~~~~v~~~~~~~D~~~-l~--~~~f 141 (265)
T 2oxt_A 71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRI-TESYGWNIVKFKSRVDIHT-LP--VERT 141 (265)
T ss_dssp SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCC-CCBTTGGGEEEECSCCTTT-SC--CCCC
T ss_pred CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhh-hhccCCCeEEEecccCHhH-CC--CCCC
Confidence 3456789999999999999999865 4799999999 53322211100 00012258899 999965 33 4789
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHH--HHHHHHHhhccccCe--EEEEEE
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI--KEIVKNASKYLVKNG--LLLIEH 532 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~--~~~l~~~~~~LkpgG--~l~~~~ 532 (570)
|+|+||..++... . ..+.. ..+++.+.++|+||| .+++.+
T Consensus 142 D~V~sd~~~~~~~-~--------------------~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 142 DVIMCDVGESSPK-W--------------------SVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp SEEEECCCCCCSC-H--------------------HHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred cEEEEeCcccCCc-c--------------------chhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 9999986522110 0 00111 137888899999999 888854
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=107.52 Aligned_cols=81 Identities=9% Similarity=0.124 Sum_probs=64.4
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---cCC---CCEEEEEcccccccccCCCcee
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---KYN---IPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---~~~---~~v~~~~~D~~~~l~~~~~~fD 472 (570)
.+|||+|||+|..++.+|..+ ++|+++|+++.++..++.|+..... .++ .+++++++|..+.+.....+||
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g---~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fD 166 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ 166 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCS
T ss_pred CEEEEcCCcCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCC
Confidence 799999999999999999874 5799999999988888877653210 011 3699999999876654445799
Q ss_pred EEEECCCCCC
Q psy2395 473 IIVANPPYIP 482 (570)
Q Consensus 473 ~Iv~NPPy~~ 482 (570)
+|++||||..
T Consensus 167 vV~lDP~y~~ 176 (258)
T 2oyr_A 167 VVYLDPMFPH 176 (258)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999999964
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-08 Score=101.81 Aligned_cols=124 Identities=12% Similarity=0.096 Sum_probs=79.9
Q ss_pred HHHHHHHHhhcC--CCCCEEEEECCcc--cHHHHHHHH-hcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc
Q psy2395 384 ELLVDLIVKKTF--EKKIKLLEMGTGS--GAIAIAIAI-YSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS 458 (570)
Q Consensus 384 ~~l~~~~~~~~~--~~~~~VLDlGcGt--G~i~l~la~-~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~ 458 (570)
+.++..++..+. ....+|||||||+ +.....+++ ..+ .++|+++|+||.|++.|+.++... ...+++|+++
T Consensus 63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P-~arVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~a 138 (277)
T 3giw_A 63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAP-ESRVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEA 138 (277)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCT-TCEEEEEECCHHHHHTTHHHHCCC---SSSEEEEEEC
T ss_pred HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCC-CCEEEEEeCChHHHHHHHHHhccC---CCCcEEEEEe
Confidence 344444444433 2346899999997 333344444 444 789999999999999999988631 1236999999
Q ss_pred cccccc---ccC--CCcee-----EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEE
Q psy2395 459 NWYNNL---QNY--KKLFN-----IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLL 528 (570)
Q Consensus 459 D~~~~l---~~~--~~~fD-----~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l 528 (570)
|+.+.. ..+ ...|| .|++|--++...+ .+....+++.+.+.|+|||+|
T Consensus 139 D~~~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d----------------------~~~p~~~l~~l~~~L~PGG~L 196 (277)
T 3giw_A 139 DMLDPASILDAPELRDTLDLTRPVALTVIAIVHFVLD----------------------EDDAVGIVRRLLEPLPSGSYL 196 (277)
T ss_dssp CTTCHHHHHTCHHHHTTCCTTSCCEEEEESCGGGSCG----------------------GGCHHHHHHHHHTTSCTTCEE
T ss_pred cccChhhhhcccccccccCcCCcchHHhhhhHhcCCc----------------------hhhHHHHHHHHHHhCCCCcEE
Confidence 997641 100 13455 5777643321110 011367889999999999999
Q ss_pred EEEEc
Q psy2395 529 LIEHG 533 (570)
Q Consensus 529 ~~~~~ 533 (570)
++...
T Consensus 197 vls~~ 201 (277)
T 3giw_A 197 AMSIG 201 (277)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 98653
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-09 Score=98.05 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=79.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---CCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN---YKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD 472 (570)
.++.+|||+|||+ +++|+|+.|++.|+++... +++++++|+.+. +. .+++||
T Consensus 11 ~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~-------~~~~~~~d~~~~-~~~~~~~~~fD 65 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN-------EGRVSVENIKQL-LQSAHKESSFD 65 (176)
T ss_dssp CTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT-------TSEEEEEEGGGG-GGGCCCSSCEE
T ss_pred CCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc-------CcEEEEechhcC-ccccCCCCCEe
Confidence 5788999999996 2389999999999987642 388999999653 33 357899
Q ss_pred EEEECCCCCCC-CCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC----------CHHHHH
Q psy2395 473 IIVANPPYIPK-GDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN----------QSNLVR 541 (570)
Q Consensus 473 ~Iv~NPPy~~~-~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~----------~~~~l~ 541 (570)
+|+++-.++.. . ....+++++.++|||||++++..+.. ....+.
T Consensus 66 ~V~~~~~l~~~~~-------------------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 120 (176)
T 2ld4_A 66 IILSGLVPGSTTL-------------------------HSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLC 120 (176)
T ss_dssp EEEECCSTTCCCC-------------------------CCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHH
T ss_pred EEEECChhhhccc-------------------------CHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHH
Confidence 99996443321 1 12688999999999999999865421 267889
Q ss_pred HHHHHCCC
Q psy2395 542 KLLFKYGF 549 (570)
Q Consensus 542 ~ll~~~Gf 549 (570)
+.+.++||
T Consensus 121 ~~l~~aGf 128 (176)
T 2ld4_A 121 SALTLSGL 128 (176)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 99999999
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-07 Score=95.79 Aligned_cols=179 Identities=15% Similarity=0.182 Sum_probs=116.9
Q ss_pred CeeeeecCCccccch----hHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPRP----ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 367 ~~~~~v~~~~~~pr~----~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
|.-+.++....+... -.+.|+...+.. .+++.+||=||-|.|..+..+++..+ ..+|+.|||++..++.|++.+
T Consensus 50 G~~L~LDg~~q~te~De~~YhE~l~h~~l~~-~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~l 127 (294)
T 3o4f_A 50 GRVMALDGVVQTTERDEFIYHEMMTHVPLLA-HGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYL 127 (294)
T ss_dssp EEEEEETTEEEEETTTHHHHHHHHHHHHHHH-SSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHC
T ss_pred ceEEEECCchhhccccHHHHHHHHHHHHHhh-CCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcC
Confidence 444555544433322 233444433322 35678999999999999999987643 579999999999999999986
Q ss_pred Hhh--cccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh
Q psy2395 443 KKK--LTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 443 ~~~--~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
... +.-.+.+++++.+|+...+....++||+|+.+.+--.. |...|+ -..+++.+.+
T Consensus 128 p~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~D~~dp~~-------------~~~~L~--------t~eFy~~~~~ 186 (294)
T 3o4f_A 128 PNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCTDPIG-------------PGESLF--------TSAFYEGCKR 186 (294)
T ss_dssp HHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEESCCCCCC-------------TTCCSS--------CCHHHHHHHH
T ss_pred ccccccccCCCcEEEEechHHHHHhhccccCCEEEEeCCCcCC-------------Cchhhc--------CHHHHHHHHH
Confidence 432 11134579999999999887666899999998642110 001111 1477888899
Q ss_pred ccccCeEEEEE--EcCCCHHHHHHHHHHC--CCeeEEEEec----C-CCCceEEEEE
Q psy2395 521 YLVKNGLLLIE--HGYNQSNLVRKLLFKY--GFSDIKSWRD----L-SGIERVTQGK 568 (570)
Q Consensus 521 ~LkpgG~l~~~--~~~~~~~~l~~ll~~~--Gf~~i~~~~D----~-~g~~R~~~~~ 568 (570)
.|+|||+++.. .+..+.+.+...++.. -|..+..+.- + .|..-+++|.
T Consensus 187 ~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~v~~~~~~vPty~~g~w~f~~as 243 (294)
T 3o4f_A 187 CLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGFYQAAIPTYYGGIMTFAWAT 243 (294)
T ss_dssp TEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSEEEEEEECCTTSSSSCEEEEEEE
T ss_pred HhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCceeeeeeeeccCCCcceeheeEE
Confidence 99999999884 3444555554444332 2776665542 2 3555666664
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.1e-09 Score=109.96 Aligned_cols=108 Identities=9% Similarity=0.081 Sum_probs=72.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE--EcccccccccCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI--KSNWYNNLQNYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~--~~D~~~~l~~~~~~fD 472 (570)
..++.+|||+|||+|.++..+++. .+|+|||+++ ++..++++.... ...+.++.++ ++|+.+ ++ +++||
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~-l~--~~~fD 150 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLV-ETFGWNLITFKSKVDVTK-ME--PFQAD 150 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCC-CCTTGGGEEEECSCCGGG-CC--CCCCS
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhh-hhcCCCeEEEeccCcHhh-CC--CCCcC
Confidence 356789999999999999999865 4799999999 543332211000 0012268899 999865 33 47899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHH--HHHHHHHhhccccCe--EEEEEE
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI--KEIVKNASKYLVKNG--LLLIEH 532 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~--~~~l~~~~~~LkpgG--~l~~~~ 532 (570)
+|+||..++... . ..+.. ..+++.+.++|+||| .+++.+
T Consensus 151 ~Vvsd~~~~~~~-~--------------------~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~ 193 (276)
T 2wa2_A 151 TVLCDIGESNPT-A--------------------AVEASRTLTVLNVISRWLEYNQGCGFCVKV 193 (276)
T ss_dssp EEEECCCCCCSC-H--------------------HHHHHHHHHHHHHHHHHHHHSTTCEEEEEE
T ss_pred EEEECCCcCCCc-h--------------------hhhHHHHHHHHHHHHHHhccCCCcEEEEEe
Confidence 999986532110 0 00111 137888899999999 888754
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.1e-08 Score=101.12 Aligned_cols=146 Identities=8% Similarity=0.038 Sum_probs=99.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc---CCCCEEEEEcccccccccCCCce
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK---YNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~---~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
+.++.+|||+|||.|.=+..++.... +..|+++|+|+.-+...++|+.+.+.. ...++.+...|.........+.|
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 46788999999999999999998764 568999999999999999999876421 22468899999865433334789
Q ss_pred eEEEECCCCCCCCCc-ccCCCCcc--ccccccccccCCCh-HHHHHHHHHHhhccccCeEEEEEEc----CCCHHHHHHH
Q psy2395 472 NIIVANPPYIPKGDI-HLNKGDLR--FEPINALTDYSNGL-SSIKEIVKNASKYLVKNGLLLIEHG----YNQSNLVRKL 543 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~-~~~~~~~~--~ep~~al~~~~~gl-~~~~~~l~~~~~~LkpgG~l~~~~~----~~~~~~l~~l 543 (570)
|.|++|+|-...... ....+... ..+.. ...+ ..-.+++..+.++|||||++++.+. ..+...+..+
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~-----~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~ 299 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKE-----RQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGA 299 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHH-----HHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHH
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHH-----HHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHH
Confidence 999999995431000 00011111 11100 0111 2346799999999999999988653 3445555555
Q ss_pred HHH
Q psy2395 544 LFK 546 (570)
Q Consensus 544 l~~ 546 (570)
|+.
T Consensus 300 L~~ 302 (359)
T 4fzv_A 300 IEL 302 (359)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-09 Score=105.20 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=60.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-cccC---CCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN-LQNY---KKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~-l~~~---~~~f 471 (570)
.++.+|||+|||+|.++. +++ .. ..+|+|+|+|+.+++.+++++.. ..+++++++|+.+. ++.. .+..
T Consensus 20 ~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~-----~~~v~~i~~D~~~~~~~~~~~~~~~~ 91 (252)
T 1qyr_A 20 QKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTFNFGELAEKMGQP 91 (252)
T ss_dssp CTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGCCHHHHHHHHTSC
T ss_pred CCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhcc-----CCceEEEECchhhCCHHHhhcccCCc
Confidence 466799999999999999 653 32 22399999999999999988753 13699999999763 2211 0245
Q ss_pred eEEEECCCCCCC
Q psy2395 472 NIIVANPPYIPK 483 (570)
Q Consensus 472 D~Iv~NPPy~~~ 483 (570)
|.|++|+||...
T Consensus 92 ~~vvsNlPY~i~ 103 (252)
T 1qyr_A 92 LRVFGNLPYNIS 103 (252)
T ss_dssp EEEEEECCTTTH
T ss_pred eEEEECCCCCcc
Confidence 899999999753
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.2e-09 Score=107.29 Aligned_cols=108 Identities=6% Similarity=-0.015 Sum_probs=71.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeC----CHHHHHHHHHHHHhhcccCCCCEEEEEc-ccccccccCCC
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDI----SKFALKIAKKNAKKKLTKYNIPIKFIKS-NWYNNLQNYKK 469 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDi----s~~al~~A~~n~~~~~~~~~~~v~~~~~-D~~~~l~~~~~ 469 (570)
..++.+|||+|||+|.++..+++. .+|+|+|+ ++.+++.+. .... ...++.|+++ |+... + ..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~---~~~~v~~~~~~D~~~l-~--~~ 147 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTY---GWNLVRLQSGVDVFFI-P--PE 147 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCST---TGGGEEEECSCCTTTS-C--CC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhc---CCCCeEEEeccccccC-C--cC
Confidence 356789999999999999999965 36999999 564432111 1100 0135899999 88653 2 36
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHH--HHHHHHHhhccccCeEEEEEEcCC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI--KEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~--~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
+||+|+||.++. .... . .+.. ..++..+.++|+|||.|++.+...
T Consensus 148 ~fD~V~sd~~~~-~g~~---------~-----------~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 148 RCDTLLCDIGES-SPNP---------T-----------VEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp CCSEEEECCCCC-CSSH---------H-----------HHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CCCEEEECCccc-cCcc---------h-----------hhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 899999986543 1100 0 0111 147788889999999998865433
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-08 Score=96.79 Aligned_cols=82 Identities=13% Similarity=0.139 Sum_probs=66.7
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
+.+...+... .++.+|||+|||+|.+++.++ + ..+++|+|||+.+++.++.++.. ++.+..+..+|....
T Consensus 94 d~fY~~i~~~--~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~----~g~~~~~~v~D~~~~ 163 (253)
T 3frh_A 94 DTLYDFIFSA--ETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFARE----KDWDFTFALQDVLCA 163 (253)
T ss_dssp HHHHHHHTSS--CCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHH----TTCEEEEEECCTTTS
T ss_pred HHHHHHHhcC--CCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHh----cCCCceEEEeecccC
Confidence 3344444443 457799999999999999987 3 58999999999999999999886 466789999999765
Q ss_pred cccCCCceeEEEEC
Q psy2395 464 LQNYKKLFNIIVAN 477 (570)
Q Consensus 464 l~~~~~~fD~Iv~N 477 (570)
.+ .++||+|+++
T Consensus 164 ~~--~~~~DvvLll 175 (253)
T 3frh_A 164 PP--AEAGDLALIF 175 (253)
T ss_dssp CC--CCBCSEEEEE
T ss_pred CC--CCCcchHHHH
Confidence 44 3699999996
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=112.84 Aligned_cols=76 Identities=12% Similarity=0.269 Sum_probs=63.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~I 474 (570)
.++.+|||||||+|.++..||+.+ ++|+|||+++.+++.|+..+..+ ...+++|.++|+.+... ..+++||+|
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~~g---a~V~giD~~~~~i~~a~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLASKG---ATIVGIDFQQENINVCRALAEEN---PDFAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHTS---TTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred CCCCeEEEECCCCcHHHHHHHhCC---CEEEEECCCHHHHHHHHHHHHhc---CCCceEEEECCHHHHhhhccCCCccEE
Confidence 357899999999999999999874 79999999999999999999863 23479999999966432 224689999
Q ss_pred EEC
Q psy2395 475 VAN 477 (570)
Q Consensus 475 v~N 477 (570)
+|.
T Consensus 139 ~~~ 141 (569)
T 4azs_A 139 IGL 141 (569)
T ss_dssp EEE
T ss_pred EEC
Confidence 994
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-07 Score=87.49 Aligned_cols=115 Identities=9% Similarity=0.076 Sum_probs=79.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-------------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN------------- 463 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~------------- 463 (570)
+..+|||+|| |+-++.+|+. + +.+|+++|.+++..+.|++|+..++.....+++++.+|+.+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~ 105 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWR 105 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGG
T ss_pred CCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhh
Confidence 4679999998 5778888864 3 589999999999999999999975310044799999997543
Q ss_pred -cc-------cC--CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE--
Q psy2395 464 -LQ-------NY--KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-- 531 (570)
Q Consensus 464 -l~-------~~--~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-- 531 (570)
++ .. .++||+|+.+-.+. ...+..+.+.|+|||.+++.
T Consensus 106 ~l~~~~~~i~~~~~~~~fDlIfIDg~k~------------------------------~~~~~~~l~~l~~GG~Iv~DNv 155 (202)
T 3cvo_A 106 SYPDYPLAVWRTEGFRHPDVVLVDGRFR------------------------------VGCALATAFSITRPVTLLFDDY 155 (202)
T ss_dssp GTTHHHHGGGGCTTCCCCSEEEECSSSH------------------------------HHHHHHHHHHCSSCEEEEETTG
T ss_pred hHHHHhhhhhccccCCCCCEEEEeCCCc------------------------------hhHHHHHHHhcCCCeEEEEeCC
Confidence 11 11 26899999964211 23444566799999999763
Q ss_pred EcCCCHHHHHHHHH
Q psy2395 532 HGYNQSNLVRKLLF 545 (570)
Q Consensus 532 ~~~~~~~~l~~ll~ 545 (570)
.....-..+.+++.
T Consensus 156 ~~r~~y~~v~~~~~ 169 (202)
T 3cvo_A 156 SQRRWQHQVEEFLG 169 (202)
T ss_dssp GGCSSGGGGHHHHC
T ss_pred cCCcchHHHHHHHh
Confidence 12333444555554
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=2e-07 Score=103.00 Aligned_cols=104 Identities=15% Similarity=0.222 Sum_probs=72.9
Q ss_pred CCEEEEECCcccHHH---HHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 398 KIKLLEMGTGSGAIA---IAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~---l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
...|||+|||+|.+. +.++.......+|+|||.|| +...|++....|+ .+.+|+++++|+.+... ++++|+|
T Consensus 358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~--~~dkVtVI~gd~eev~L--PEKVDII 432 (637)
T 4gqb_A 358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEE--WGSQVTVVSSDMREWVA--PEKADII 432 (637)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHT--TGGGEEEEESCTTTCCC--SSCEEEE
T ss_pred CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhcc--CCCeEEEEeCcceeccC--CcccCEE
Confidence 357999999999994 44444433234899999998 4557888887764 45679999999976432 3799999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
||-. +..++..+++ -..+....++|||||.++
T Consensus 433 VSEw--------------------MG~fLl~E~m---levL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 433 VSEL--------------------LGSFADNELS---PECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp ECCC--------------------CBTTBGGGCH---HHHHHHHGGGEEEEEEEE
T ss_pred EEEc--------------------CcccccccCC---HHHHHHHHHhcCCCcEEc
Confidence 9932 0111111222 356778889999999876
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-07 Score=92.14 Aligned_cols=119 Identities=14% Similarity=0.046 Sum_probs=86.5
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCceeEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLFNII 474 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD~I 474 (570)
+..+||+.+|||.+++.+... +.+++.+|.++.+++..++|+.. ..++.+++.|.+..+. .+..+||+|
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLV 163 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLI 163 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred CCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence 557899999999999998862 46999999999999999999863 4569999999877554 223579999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh--ccccCeEEEEEEcCCCH---HHHHHHHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK--YLVKNGLLLIEHGYNQS---NLVRKLLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~--~LkpgG~l~~~~~~~~~---~~l~~ll~~~Gf 549 (570)
+++|||-... .+.++++.+.+ .+.|+|++++=.|.-+. ..+.+-+++.|.
T Consensus 164 fiDPPYe~k~-------------------------~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~ 218 (283)
T 2oo3_A 164 FIDPSYERKE-------------------------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS 218 (283)
T ss_dssp EECCCCCSTT-------------------------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred EECCCCCCCc-------------------------HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence 9999996322 23444443333 46789998875555443 344444555565
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.41 E-value=3e-07 Score=81.89 Aligned_cols=83 Identities=20% Similarity=0.250 Sum_probs=61.7
Q ss_pred ccccch--hHHHHHHHHHhhcCCCCCEEEEECCccc-HHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC
Q psy2395 376 VLIPRP--ETELLVDLIVKKTFEKKIKLLEMGTGSG-AIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP 452 (570)
Q Consensus 376 ~~~pr~--~t~~l~~~~~~~~~~~~~~VLDlGcGtG-~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~ 452 (570)
.+.|+. --+.+++++.+.. .++.+|||+|||+| ..+..|+... +..|+++|++|.++.
T Consensus 13 ~~~~~~~~m~e~LaeYI~~~~-~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~---------------- 73 (153)
T 2k4m_A 13 GLVPRGSHMWNDLAVYIIRCS-GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG---------------- 73 (153)
T ss_dssp CCCCCCCHHHHHHHHHHHHHS-CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------
T ss_pred CcccchhhHHHHHHHHHHhcC-CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------
Confidence 345552 2456677766544 34579999999999 6999999743 478999999998865
Q ss_pred EEEEEcccccccccCCCceeEE-EECCC
Q psy2395 453 IKFIKSNWYNNLQNYKKLFNII-VANPP 479 (570)
Q Consensus 453 v~~~~~D~~~~l~~~~~~fD~I-v~NPP 479 (570)
+++.|++++....-..||+| -.|||
T Consensus 74 --~v~dDiF~P~~~~Y~~~DLIYsirPP 99 (153)
T 2k4m_A 74 --IVRDDITSPRMEIYRGAALIYSIRPP 99 (153)
T ss_dssp --EECCCSSSCCHHHHTTEEEEEEESCC
T ss_pred --eEEccCCCCcccccCCcCEEEEcCCC
Confidence 78899988654322489999 66987
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.40 E-value=4.7e-07 Score=99.99 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=71.5
Q ss_pred CCEEEEECCcccHHHHHHHHhc---C---------CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS---K---------NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ 465 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~---~---------~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~ 465 (570)
+..|||+|||+|.++...++.. . ...+|+|||.|+.++..++.... |+ .+.+|+++.+|+.+...
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng--~~d~VtVI~gd~eev~l 486 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RT--WKRRVTIIESDMRSLPG 486 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HT--TTTCSEEEESCGGGHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cC--CCCeEEEEeCchhhccc
Confidence 4589999999999964332211 1 13599999999988876665544 32 45679999999976432
Q ss_pred c----CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 466 N----YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 466 ~----~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
. ..+++|+|||-.. ..++ ..+.....+..+.++|+|||+++
T Consensus 487 p~~~~~~ekVDIIVSElm--------------------Gsfl---~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELL--------------------GSFG---DNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEECCC--------------------BTTB---GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccCCCCcccEEEEecc--------------------cccc---chhccHHHHHHHHHhCCCCcEEE
Confidence 0 1378999999321 0011 11234567777789999999876
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=83.57 Aligned_cols=185 Identities=14% Similarity=0.161 Sum_probs=110.4
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHhh--cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVKK--TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~~--~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
+|..+.++........+ +...+.+... ...++.+||=+|-|.|..+..+.+. + ..+|+.|||+|..++.|++.+.
T Consensus 173 ~Gr~L~LDG~~Q~te~D-~~Y~e~l~h~~l~~~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp 249 (381)
T 3c6k_A 173 FGNILILSGDVNLAESD-LAYTRAIMGSGKEDYTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMR 249 (381)
T ss_dssp TEEEEEETTEEEEETTC-HHHHHHHTTTTCCCCTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCC
T ss_pred cceEEEECCceeeeCCh-HHHHHHHHHHHhhcCCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhch
Confidence 35555555444433333 2333333221 1235679999999999999999876 3 3699999999999999998754
Q ss_pred hhc-ccC----CCCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHH
Q psy2395 444 KKL-TKY----NIPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIV 515 (570)
Q Consensus 444 ~~~-~~~----~~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l 515 (570)
... ... ..+++++.+|+...+.. ..++||+|+.+.+-.+... .|. +.....+.+.++
T Consensus 250 ~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~----------~p~-----g~a~~Lft~eFy 314 (381)
T 3c6k_A 250 KTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPIST----------SPE-----EDSTWEFLRLIL 314 (381)
T ss_dssp C----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCC----------C---------CHHHHHHHHH
T ss_pred hhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccC----------ccc-----CcchHHHHHHHH
Confidence 210 001 23589999999876642 2368999999853211100 000 000113557899
Q ss_pred HHHhhccccCeEEEEEEc-CCCHHH---HHHHHHHCCCeeEEEE------ecCCCCceEEEEEe
Q psy2395 516 KNASKYLVKNGLLLIEHG-YNQSNL---VRKLLFKYGFSDIKSW------RDLSGIERVTQGKI 569 (570)
Q Consensus 516 ~~~~~~LkpgG~l~~~~~-~~~~~~---l~~ll~~~Gf~~i~~~------~D~~g~~R~~~~~~ 569 (570)
+.+.+.|+|||+++...+ ....+. +.+.+++. |..+.+. +-+.|..-+++|.+
T Consensus 315 ~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~v-F~~v~~~~~~~~VPSy~~~W~F~~aSK 377 (381)
T 3c6k_A 315 DLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRL-YCPVEFSKEIVCVPSYLELWVFYTVWK 377 (381)
T ss_dssp HHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTS-SSCEEEEEEEECCGGGSSCEEEEEEEE
T ss_pred HHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHh-CCcceEeeEEEEecCCCCceeeeEEEC
Confidence 999999999999987443 222333 33444443 4444432 23445555666554
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=9e-07 Score=87.33 Aligned_cols=150 Identities=9% Similarity=0.009 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
+..|.+.......+++.+|||||||+|.++..++...+ ...|+|+|+.-.+....... . ..+.++..+.+++ +
T Consensus 60 A~KL~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~----~~g~~ii~~~~~~-d 132 (277)
T 3evf_A 60 TAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-Q----SLGWNIITFKDKT-D 132 (277)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-C----BTTGGGEEEECSC-C
T ss_pred HHHHHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-C----cCCCCeEEEeccc-e
Confidence 34555555444456778999999999999998886543 45788888874431000000 0 0122445556654 2
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHH--HHHHHHhhccccC-eEEEEEEcC---CC
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIK--EIVKNASKYLVKN-GLLLIEHGY---NQ 536 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~--~~l~~~~~~Lkpg-G~l~~~~~~---~~ 536 (570)
.......+||+|+||-... ... ...+.++ .+++.+.++|+|| |.|++-+-. ..
T Consensus 133 v~~l~~~~~DlVlsD~apn-sG~--------------------~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~pyg~~ 191 (277)
T 3evf_A 133 IHRLEPVKCDTLLCDIGES-SSS--------------------SVTEGERTVRVLDTVEKWLACGVDNFCVKVLAPYMPD 191 (277)
T ss_dssp TTTSCCCCCSEEEECCCCC-CSC--------------------HHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCTTSHH
T ss_pred ehhcCCCCccEEEecCccC-cCc--------------------hHHHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCCcc
Confidence 2223347899999983211 110 0011112 3478889999999 999985432 22
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCc
Q psy2395 537 SNLVRKLLFKYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 537 ~~~l~~ll~~~Gf~~i~~~~D~~g~~ 562 (570)
...+...|+. -|..+.+.+. +.+.
T Consensus 192 ~~~l~~~lk~-~F~~V~~~KP-aSR~ 215 (277)
T 3evf_A 192 VLEKLELLQR-RFGGTVIRNP-LSRN 215 (277)
T ss_dssp HHHHHHHHHH-HHCCEEECCT-TSCT
T ss_pred HHHHHHHHHH-hcCCEEEEeC-CCCC
Confidence 2334444444 3777888776 5443
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-06 Score=89.12 Aligned_cols=97 Identities=20% Similarity=0.323 Sum_probs=65.5
Q ss_pred CEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 452 PIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
++.++++|+++.+... +++||+||+||||............. .++..+.+.+..+..++.++.++|+|||.+++
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~-----~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i 95 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQL-----GHIEDYEAFLDELDRVWREVFRLLVPGGRLVI 95 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CC-----HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhh-----cccccHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4789999998865432 37899999999998643221111111 11222333455677889999999999999999
Q ss_pred EEcCCC--------------HHHHHHHHHHCCCeeEE
Q psy2395 531 EHGYNQ--------------SNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 531 ~~~~~~--------------~~~l~~ll~~~Gf~~i~ 553 (570)
+++..+ ...+..++.+.||....
T Consensus 96 ~~~d~~~~~~~~g~~~~~~~~~~l~~~~~~~Gf~~~~ 132 (297)
T 2zig_A 96 VVGDVAVARRRFGRHLVFPLHADIQVRCRKLGFDNLN 132 (297)
T ss_dssp EECCEEEECC----EEEECHHHHHHHHHHHTTCEEEE
T ss_pred EECCCccccccCCcccccccHHHHHHHHHHcCCeeec
Confidence 987532 14677889999987644
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.23 E-value=6.3e-06 Score=82.55 Aligned_cols=128 Identities=12% Similarity=0.141 Sum_probs=92.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcC----CCcEEEEEeCCH--------------------------HHHHHHHHHHHhh
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSK----NKIEIIATDISK--------------------------FALKIAKKNAKKK 445 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~----~~~~V~gvDis~--------------------------~al~~A~~n~~~~ 445 (570)
..+..|||+||..|..++.++...+ ++.+|+++|..+ ..++.+++|+...
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~ 184 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY 184 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence 3467999999999999998876542 257899999642 1467789999875
Q ss_pred cccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
+. ...+++++.||+.+.++.. .++||+|+.+-- -.+.+...++.+...|+|
T Consensus 185 gl-~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---------------------------~y~~~~~~Le~~~p~L~p 236 (282)
T 2wk1_A 185 DL-LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---------------------------LYESTWDTLTNLYPKVSV 236 (282)
T ss_dssp TC-CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---------------------------SHHHHHHHHHHHGGGEEE
T ss_pred CC-CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---------------------------ccccHHHHHHHHHhhcCC
Confidence 31 1257999999998877644 368999999531 123456788999999999
Q ss_pred CeEEEEE-EcC--CCHHHHHHHHHHCCCee
Q psy2395 525 NGLLLIE-HGY--NQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 525 gG~l~~~-~~~--~~~~~l~~ll~~~Gf~~ 551 (570)
||++++. +.. .....+.+++...|+..
T Consensus 237 GGiIv~DD~~~~~G~~~Av~Ef~~~~~i~~ 266 (282)
T 2wk1_A 237 GGYVIVDDYMMCPPCKDAVDEYRAKFDIAD 266 (282)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHTTCCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCce
Confidence 9998872 222 22456677777778654
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.18 E-value=8.8e-07 Score=87.52 Aligned_cols=149 Identities=7% Similarity=-0.058 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..|.+..-.....++.+|||||||.|.++..++...+ ...|+|+|+...+...+... . ..+.++.....++ +.
T Consensus 77 fKL~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~----~~g~~ii~~~~~~-dv 149 (282)
T 3gcz_A 77 AKLRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-T----TLGWNLIRFKDKT-DV 149 (282)
T ss_dssp HHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-C----BTTGGGEEEECSC-CG
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-c----cCCCceEEeeCCc-ch
Confidence 4455555444556778999999999999999886543 46799999986532222110 0 0122333333322 11
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHH--HHHHHHhhccccC--eEEEEEEcC---CC
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIK--EIVKNASKYLVKN--GLLLIEHGY---NQ 536 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~--~~l~~~~~~Lkpg--G~l~~~~~~---~~ 536 (570)
......++|+|+||.... ... ...+.++ .++..+..+|+|| |.|++-+=. ..
T Consensus 150 ~~l~~~~~DvVLSDmApn-sG~--------------------~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~ 208 (282)
T 3gcz_A 150 FNMEVIPGDTLLCDIGES-SPS--------------------IAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPL 208 (282)
T ss_dssp GGSCCCCCSEEEECCCCC-CSC--------------------HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHH
T ss_pred hhcCCCCcCEEEecCccC-CCC--------------------hHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCcc
Confidence 122247899999983211 110 0112222 3588888999999 999885432 22
Q ss_pred HHHHHHHHHHCCCeeEEEEecCCCCc
Q psy2395 537 SNLVRKLLFKYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 537 ~~~l~~ll~~~Gf~~i~~~~D~~g~~ 562 (570)
...+...|+. -|..+.+.+. +.+.
T Consensus 209 ~~~l~~~lk~-~F~~V~~~KP-aSR~ 232 (282)
T 3gcz_A 209 IMEELSRLQL-KHGGGLVRVP-LSRN 232 (282)
T ss_dssp HHHHHHHHHH-HHCCEEECCT-TSCT
T ss_pred HHHHHHHHHH-hcCCEEEEcC-CCcc
Confidence 2334444444 3777877776 5443
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.13 E-value=7e-06 Score=81.51 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=62.7
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc---cccC-CCc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN---LQNY-KKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~---l~~~-~~~ 470 (570)
..++..++|.+||.|..+..+++. +++|+|+|.||.+++.|++ +. . .+++++++|+.+. +... .++
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~-----~-~rv~lv~~~f~~l~~~L~~~g~~~ 89 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LH-----L-PGLTVVQGNFRHLKRHLAALGVER 89 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TC-----C-TTEEEEESCGGGHHHHHHHTTCSC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hc-----c-CCEEEEECCcchHHHHHHHcCCCC
Confidence 356789999999999999999976 3699999999999999998 54 2 4799999999653 2211 157
Q ss_pred eeEEEECCCCCC
Q psy2395 471 FNIIVANPPYIP 482 (570)
Q Consensus 471 fD~Iv~NPPy~~ 482 (570)
||.|++|++|..
T Consensus 90 vDgIL~DLGvSS 101 (285)
T 1wg8_A 90 VDGILADLGVSS 101 (285)
T ss_dssp EEEEEEECSCCH
T ss_pred cCEEEeCCcccc
Confidence 999999887543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.4e-05 Score=73.02 Aligned_cols=126 Identities=10% Similarity=0.137 Sum_probs=80.0
Q ss_pred CCCCEEEEECC------cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 396 EKKIKLLEMGT------GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 396 ~~~~~VLDlGc------GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
+.+.+|||+|+ -.|. ..+.+..+.++.|+++|+.|-.. ... .+++||+.+... ..
T Consensus 108 p~gmrVLDLGA~s~kg~APGS--~VLr~~~p~g~~VVavDL~~~~s--------------da~-~~IqGD~~~~~~--~~ 168 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFVS--------------DAD-STLIGDCATVHT--AN 168 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCBC--------------SSS-EEEESCGGGEEE--SS
T ss_pred cCCCEEEeCCCCCCCCCCCcH--HHHHHhCCCCcEEEEeeCccccc--------------CCC-eEEEcccccccc--CC
Confidence 56889999997 4566 34445555446999999987431 112 459999865333 37
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--cCCCHHHHHHHHHHC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--GYNQSNLVRKLLFKY 547 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~l~~ll~~~ 547 (570)
+||+|+|+.-=-...... . + ......+.+.++.-+.+.|+|||.|++-+ |.+ .+.+.++. +
T Consensus 169 k~DLVISDMAPNtTG~~D--~------d------~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg-~~~L~~lr-k- 231 (344)
T 3r24_A 169 KWDLIISDMYDPRTKHVT--K------E------NDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW-NADLYKLM-G- 231 (344)
T ss_dssp CEEEEEECCCCTTSCSSC--S------C------CCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC-CHHHHHHH-T-
T ss_pred CCCEEEecCCCCcCCccc--c------c------hhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC-HHHHHHHH-h-
Confidence 899999983110111000 0 0 00123356788888999999999999854 333 34455544 3
Q ss_pred CCeeEEEEec
Q psy2395 548 GFSDIKSWRD 557 (570)
Q Consensus 548 Gf~~i~~~~D 557 (570)
-|..+++++.
T Consensus 232 ~F~~VK~fK~ 241 (344)
T 3r24_A 232 HFSWWTAFVT 241 (344)
T ss_dssp TEEEEEEEEE
T ss_pred hCCeEEEECC
Confidence 6998888874
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.93 E-value=3.7e-05 Score=79.32 Aligned_cols=147 Identities=18% Similarity=0.212 Sum_probs=86.4
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CC-CceeEEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YK-KLFNIIV 475 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~-~~fD~Iv 475 (570)
+.+|+|++||+|.+++.+...+-....|+++|+++.+++..+.|... ..++++|+.+.... .. ..+|+|+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~--------~~~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH--------TQLLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT--------SCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc--------cccccCCHHHccHhHcCcCCcCEEE
Confidence 35899999999999999987752113699999999999999999752 34778998664321 11 2699999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCCh-HHHHHHHHHHhhccc--cCeEEEEE-EcC----CCHHHHHHHHHHC
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGL-SSIKEIVKNASKYLV--KNGLLLIE-HGY----NQSNLVRKLLFKY 547 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl-~~~~~~l~~~~~~Lk--pgG~l~~~-~~~----~~~~~l~~ll~~~ 547 (570)
.+||.-+.+.... .. +..+.. ..+..+++. .+.++ |. ++++| +.. .....+.+.|.+.
T Consensus 74 ~gpPCq~fS~ag~---~~---------g~~d~r~~l~~~~~~~-i~~~~~~P~-~~~~ENV~~l~~~~~~~~i~~~l~~~ 139 (343)
T 1g55_A 74 MSPPCQPFTRIGR---QG---------DMTDSRTNSFLHILDI-LPRLQKLPK-YILLENVKGFEVSSTRDLLIQTIENC 139 (343)
T ss_dssp ECCC------------------------------CHHHHHHHH-GGGCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHT
T ss_pred EcCCCcchhhcCC---cC---------CccCccchHHHHHHHH-HHHhcCCCC-EEEEeCCccccCHHHHHHHHHHHHHC
Confidence 9999654321100 00 000100 133445543 34556 65 44453 222 2245677778889
Q ss_pred CCeeEEEEe---cC---CCCceEEE
Q psy2395 548 GFSDIKSWR---DL---SGIERVTQ 566 (570)
Q Consensus 548 Gf~~i~~~~---D~---~g~~R~~~ 566 (570)
||......- |+ +.+.|+++
T Consensus 140 GY~v~~~vl~a~~~GvPQ~R~R~~i 164 (343)
T 1g55_A 140 GFQYQEFLLSPTSLGIPNSRLRYFL 164 (343)
T ss_dssp TEEEEEEEECGGGGTCSCCCCEEEE
T ss_pred CCeeEEEEEEHHHCCCCCcccEEEE
Confidence 997644322 22 45667655
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.87 E-value=3.1e-05 Score=78.24 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..+++.++.....++..|||+|||||.+++++++.+ .+++|+|+++.+++.|++|+..
T Consensus 222 ~~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g---~~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 222 LELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARWG---RRALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 344555555444678899999999999999988764 5899999999999999999876
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.7e-05 Score=77.25 Aligned_cols=143 Identities=11% Similarity=0.084 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC---CcEEEEEeC--CHHHHHHHHHHHHhhcccCCCC-EE
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN---KIEIIATDI--SKFALKIAKKNAKKKLTKYNIP-IK 454 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~---~~~V~gvDi--s~~al~~A~~n~~~~~~~~~~~-v~ 454 (570)
..+..|.+.--..+.+++.+|+||||+.|.++..++....- ...++|+|+ .|-.. . ..+.+ +.
T Consensus 57 RAayKL~EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~----~~Gv~~i~ 125 (269)
T 2px2_A 57 RGTAKLRWLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------Q----SYGWNIVT 125 (269)
T ss_dssp THHHHHHHHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------C----STTGGGEE
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------c----CCCceEEE
Confidence 34455555555556678999999999999999999876210 123445552 11100 0 01112 45
Q ss_pred EEEc-ccccccccCCCceeEEEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCe-EEEEE
Q psy2395 455 FIKS-NWYNNLQNYKKLFNIIVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNG-LLLIE 531 (570)
Q Consensus 455 ~~~~-D~~~~l~~~~~~fD~Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG-~l~~~ 531 (570)
|.++ |+++ +. ..++|+|+|+. |- .... . .|....+. .+..+.++|+||| .|++-
T Consensus 126 ~~~G~Df~~-~~--~~~~DvVLSDMAPn--SG~~-----~------------vD~~Rs~~-aL~~A~~~Lk~gG~~FvvK 182 (269)
T 2px2_A 126 MKSGVDVFY-KP--SEISDTLLCDIGES--SPSA-----E------------IEEQRTLR-ILEMVSDWLSRGPKEFCIK 182 (269)
T ss_dssp EECSCCGGG-SC--CCCCSEEEECCCCC--CSCH-----H------------HHHHHHHH-HHHHHHHHHTTCCSEEEEE
T ss_pred eeccCCccC-CC--CCCCCEEEeCCCCC--CCcc-----H------------HHHHHHHH-HHHHHHHHhhcCCcEEEEE
Confidence 6667 9976 22 25899999983 21 1100 0 01111222 6777888999999 88774
Q ss_pred EcCCCHHHHHHHHHH--CCCeeEEEEec
Q psy2395 532 HGYNQSNLVRKLLFK--YGFSDIKSWRD 557 (570)
Q Consensus 532 ~~~~~~~~l~~ll~~--~Gf~~i~~~~D 557 (570)
+-....+.+.++++. .-|..+.+.+.
T Consensus 183 VFqg~~~~~~~~l~~lk~~F~~vkvk~p 210 (269)
T 2px2_A 183 ILCPYMPKVIEKLESLQRRFGGGLVRVP 210 (269)
T ss_dssp ESCTTSHHHHHHHHHHHHHHCCEEECCT
T ss_pred ECCCCchHHHHHHHHHHHHcCCEEEECC
Confidence 433333445443332 13666666555
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00037 Score=70.18 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=90.5
Q ss_pred CCCEEEEECCcccHHHHHHHH----hcCC-CcEEEEEeCCH--------H-HHHHHHHHHHhh--cccCCCCEEEEEccc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAI----YSKN-KIEIIATDISK--------F-ALKIAKKNAKKK--LTKYNIPIKFIKSNW 460 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~----~~~~-~~~V~gvDis~--------~-al~~A~~n~~~~--~~~~~~~v~~~~~D~ 460 (570)
+..+|||+|-|||...+.... ..+. ..+++++|..+ . .-+....-.... .......+++..||+
T Consensus 96 ~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa 175 (308)
T 3vyw_A 96 KVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDA 175 (308)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCH
T ss_pred CCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechH
Confidence 446899999999987654332 2221 24567777533 1 111222222111 001123467889999
Q ss_pred ccccccCC-CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHH
Q psy2395 461 YNNLQNYK-KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNL 539 (570)
Q Consensus 461 ~~~l~~~~-~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 539 (570)
.+.++... .+||+|+.|+ |.|...+ .+ + -..+++.++++++|||.++ .+.....
T Consensus 176 ~~~l~~l~~~~~Da~flDg-FsP~kNP-----------eL--------W--s~e~f~~l~~~~~pgg~la---TYtaag~ 230 (308)
T 3vyw_A 176 RKRIKEVENFKADAVFHDA-FSPYKNP-----------EL--------W--TLDFLSLIKERIDEKGYWV---SYSSSLS 230 (308)
T ss_dssp HHHGGGCCSCCEEEEEECC-SCTTTSG-----------GG--------G--SHHHHHHHHTTEEEEEEEE---ESCCCHH
T ss_pred HHHHhhhcccceeEEEeCC-CCcccCc-----------cc--------C--CHHHHHHHHHHhCCCcEEE---EEeCcHH
Confidence 88776544 4799999986 4443321 10 1 1678999999999999886 3566778
Q ss_pred HHHHHHHCCCeeEEEEecCCCCceEEEEEe
Q psy2395 540 VRKLLFKYGFSDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 540 l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~~ 569 (570)
+++.|.++||.+- ..+-..++.-+++|.+
T Consensus 231 VRR~L~~aGF~V~-k~~G~g~KReml~A~~ 259 (308)
T 3vyw_A 231 VRKSLLTLGFKVG-SSREIGRKRKGTVASL 259 (308)
T ss_dssp HHHHHHHTTCEEE-EEECC---CEEEEEES
T ss_pred HHHHHHHCCCEEE-ecCCCCCCCceeEEec
Confidence 9999999999854 4555566666777765
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=2.2e-05 Score=78.03 Aligned_cols=146 Identities=9% Similarity=-0.001 Sum_probs=82.1
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC-EEEEEc-ccc
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKS-NWY 461 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~-v~~~~~-D~~ 461 (570)
..|.+..-..+..++.+||||||++|.++..+++..+ ...|+|+|+...+....... . ..+.+ +.+..+ |+.
T Consensus 68 ~KL~ei~ek~l~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~~-~----~~~~~iv~~~~~~di~ 141 (300)
T 3eld_A 68 AKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIHM-Q----TLGWNIVKFKDKSNVF 141 (300)
T ss_dssp HHHHHHHHHTSCCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-C----BTTGGGEEEECSCCTT
T ss_pred HHHHHHHHhCCCCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEeccccccccccc-c----ccCCceEEeecCceee
Confidence 3444444333446788999999999999999997543 45799999975421100000 0 01112 233322 332
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHH--HHHHHHHhhccccC-eEEEEEEcC---C
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSI--KEIVKNASKYLVKN-GLLLIEHGY---N 535 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~--~~~l~~~~~~Lkpg-G~l~~~~~~---~ 535 (570)
. ....++|+|+||---. ... ...+.+ ..++..+..+|+|| |.|++-+-. .
T Consensus 142 ~---l~~~~~DlVlsD~APn-sG~--------------------~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~ 197 (300)
T 3eld_A 142 T---MPTEPSDTLLCDIGES-SSN--------------------PLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHP 197 (300)
T ss_dssp T---SCCCCCSEEEECCCCC-CSS--------------------HHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSH
T ss_pred e---cCCCCcCEEeecCcCC-CCC--------------------HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCc
Confidence 2 2236899999983111 110 001111 24488888999999 999885422 1
Q ss_pred CHHHHHHHHHHCCCeeEEEEecCCCC
Q psy2395 536 QSNLVRKLLFKYGFSDIKSWRDLSGI 561 (570)
Q Consensus 536 ~~~~l~~ll~~~Gf~~i~~~~D~~g~ 561 (570)
....+...|+. -|..+.+.+. +.+
T Consensus 198 ~~~~ll~~lk~-~F~~V~~~KP-aSR 221 (300)
T 3eld_A 198 DVIEKLERLQL-RFGGGIVRVP-FSR 221 (300)
T ss_dssp HHHHHHHHHHH-HHCCEEECCT-TSC
T ss_pred cHHHHHHHHHH-hCCcEEEEeC-CCC
Confidence 22334444444 3777777776 443
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.001 Score=68.64 Aligned_cols=86 Identities=9% Similarity=0.133 Sum_probs=61.5
Q ss_pred cchhHHHHHHHHHhh--------cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC
Q psy2395 379 PRPETELLVDLIVKK--------TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 379 pr~~t~~l~~~~~~~--------~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~ 450 (570)
|...+..|.+.+... ...++.++||+||++|.++..+++++ ++|+|||+.+-.- .+. ..
T Consensus 185 pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg---~~V~aVD~~~l~~-----~l~-----~~ 251 (375)
T 4auk_A 185 PSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRN---MWVYSVDNGPMAQ-----SLM-----DT 251 (375)
T ss_dssp SCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTT---CEEEEECSSCCCH-----HHH-----TT
T ss_pred CCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCC---CEEEEEEhhhcCh-----hhc-----cC
Confidence 444555665554332 23578999999999999999999764 6999999865221 111 23
Q ss_pred CCEEEEEcccccccccCCCceeEEEECC
Q psy2395 451 IPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 451 ~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|+++++|++...+. ..+||+|+|+.
T Consensus 252 ~~V~~~~~d~~~~~~~-~~~~D~vvsDm 278 (375)
T 4auk_A 252 GQVTWLREDGFKFRPT-RSNISWMVCDM 278 (375)
T ss_dssp TCEEEECSCTTTCCCC-SSCEEEEEECC
T ss_pred CCeEEEeCccccccCC-CCCcCEEEEcC
Confidence 4699999999875543 46899999974
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00091 Score=68.39 Aligned_cols=143 Identities=12% Similarity=0.131 Sum_probs=88.8
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+.+++|++||+|.+++.+...+ ...|+++|+++.+++..+.|... . . ++|+.+.....-..+|+|+..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~----~---~---~~Di~~~~~~~~~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGE----K---P---EGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSC----C---C---BSCGGGSCGGGSCCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCC----C---C---cCCHHHcCHhhCCCCCEEEEC
Confidence 4689999999999999998765 35688999999999999999753 1 1 688866443222469999999
Q ss_pred CCCCCCCCcccCCCCccc-cccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC-C------CHHHHHHHHHHCC
Q psy2395 478 PPYIPKGDIHLNKGDLRF-EPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY-N------QSNLVRKLLFKYG 548 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~-ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~-~------~~~~l~~ll~~~G 548 (570)
||+-+.+.... ...+ +|+. ..+..+++.+ +.++|. ++++|- +. . ....+.+.|.+.|
T Consensus 79 pPCQ~fS~ag~---~~g~~d~r~---------~L~~~~~r~i-~~~~P~-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~G 144 (327)
T 2c7p_A 79 FPCQAFSISGK---QKGFEDSRG---------TLFFDIARIV-REKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELD 144 (327)
T ss_dssp CCCTTTCTTSC---CCGGGSTTS---------CHHHHHHHHH-HHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTT
T ss_pred CCCCCcchhcc---cCCCcchhh---------HHHHHHHHHH-HhccCc-EEEEeCcHHHHhccccHHHHHHHHHHHhCC
Confidence 99875442110 0000 1111 1334444433 346785 455543 21 1 1345677788899
Q ss_pred CeeEEEEe---cC---CCCceEEE
Q psy2395 549 FSDIKSWR---DL---SGIERVTQ 566 (570)
Q Consensus 549 f~~i~~~~---D~---~g~~R~~~ 566 (570)
|......- |+ +.+.|+++
T Consensus 145 Y~v~~~vl~a~~~GvPQ~R~R~~i 168 (327)
T 2c7p_A 145 YSFHAKVLNALDYGIPQKRERIYM 168 (327)
T ss_dssp BCCEEEEEEGGGGTCSBCCEEEEE
T ss_pred CEEEEEEEEHHHcCCCccceEEEE
Confidence 87643322 22 44557654
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.63 E-value=5.1e-05 Score=77.05 Aligned_cols=80 Identities=13% Similarity=0.023 Sum_probs=62.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---ccC--CC
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---QNY--KK 469 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---~~~--~~ 469 (570)
..++..++|.+||.|..+..++....+..+|+|+|.++.|++.|+ ++ ...+++++++++.+.. ... .+
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL------~~~Rv~lv~~nF~~l~~~L~~~g~~~ 127 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI------DDPRFSIIHGPFSALGEYVAERDLIG 127 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC------CCTTEEEEESCGGGHHHHHHHTTCTT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh------cCCcEEEEeCCHHHHHHHHHhcCCCC
Confidence 357889999999999999999987645689999999999999984 32 2457999999986532 211 13
Q ss_pred ceeEEEECCCCC
Q psy2395 470 LFNIIVANPPYI 481 (570)
Q Consensus 470 ~fD~Iv~NPPy~ 481 (570)
++|.|+.|..|.
T Consensus 128 ~vDgILfDLGVS 139 (347)
T 3tka_A 128 KIDGILLDLGVS 139 (347)
T ss_dssp CEEEEEEECSCC
T ss_pred cccEEEECCccC
Confidence 699999976654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0012 Score=63.28 Aligned_cols=121 Identities=10% Similarity=0.099 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC-CCEEEEEc-cc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN-IPIKFIKS-NW 460 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~-~~v~~~~~-D~ 460 (570)
+..|.+.....+..++.+|+|+||++|.++..++.... ..+|+|+|+-+.--+.=+ ..+. .+ ..++|..+ |+
T Consensus 64 ~~KL~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P~-~~~s----~gwn~v~fk~gvDv 137 (267)
T 3p8z_A 64 SAKLQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEPV-PMST----YGWNIVKLMSGKDV 137 (267)
T ss_dssp HHHHHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCCC-CCCC----TTTTSEEEECSCCG
T ss_pred HHHHHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCcc-hhhh----cCcCceEEEeccce
Confidence 34555555555556788999999999999998887653 468999999654210000 0000 11 23899999 98
Q ss_pred ccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 461 YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 461 ~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
+...+ .++|.|+|+.-=. .+.. .+ +.... ...++.+.+.|++ |.+++-+
T Consensus 138 ~~~~~---~~~DtllcDIgeS-s~~~-----~v------------E~~Rt-lrvLela~~wL~~-~~fc~KV 186 (267)
T 3p8z_A 138 FYLPP---EKCDTLLCDIGES-SPSP-----TV------------EESRT-IRVLKMVEPWLKN-NQFCIKV 186 (267)
T ss_dssp GGCCC---CCCSEEEECCCCC-CSCH-----HH------------HHHHH-HHHHHHHGGGCSS-CEEEEEE
T ss_pred eecCC---ccccEEEEecCCC-CCCh-----hh------------hhhHH-HHHHHHHHHhccc-CCEEEEE
Confidence 54332 5799999973111 1100 00 00011 2378888899998 6777644
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00013 Score=72.21 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=47.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..|++.++.....++..|||++||||..++++++.+ .+++|+|+++.+++.|++|+..
T Consensus 199 ~~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~g---r~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 199 RDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHHh
Confidence 345555555445678899999999999999988764 5899999999999999999975
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.001 Score=69.37 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=57.7
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-------CCCce
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-------YKKLF 471 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-------~~~~f 471 (570)
.+++|++||+|.+++.+...+ ...|.++|+++.+++..+.|.. ...++++|+.+.... ....+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~--------~~~~~~~DI~~~~~~~~~~~~~~~~~~ 72 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP--------RSLHVQEDVSLLNAEIIKGFFKNDMPI 72 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT--------TSEEECCCGGGCCHHHHHHHHCSCCCC
T ss_pred CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC--------CCceEecChhhcCHHHHHhhcccCCCe
Confidence 589999999999999998776 2467899999999999888864 256788998664221 13579
Q ss_pred eEEEECCCCC
Q psy2395 472 NIIVANPPYI 481 (570)
Q Consensus 472 D~Iv~NPPy~ 481 (570)
|+|+..||--
T Consensus 73 D~i~ggpPCQ 82 (376)
T 3g7u_A 73 DGIIGGPPCQ 82 (376)
T ss_dssp CEEEECCCCC
T ss_pred eEEEecCCCC
Confidence 9999999954
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00038 Score=71.14 Aligned_cols=91 Identities=11% Similarity=0.232 Sum_probs=62.2
Q ss_pred CEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 452 PIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+..++++|..+.+... +++||+|++||||...... .|.. ....+-+..+..++..+.++|+|||.+++
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~-------~y~~----~~~~~~~~~l~~~l~~~~rvLk~~G~i~i 82 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKK-------EYGN----LEQHEYVDWFLSFAKVVNKKLKPDGSFVV 82 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSC-------SSCS----CHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCccc-------ccCC----cCHHHHHHHHHHHHHHHHHHCcCCcEEEE
Confidence 5789999997765432 4789999999999754311 1110 00111234677889999999999999999
Q ss_pred EEcCC-----------CHHHHHHHHHHCCCeeEE
Q psy2395 531 EHGYN-----------QSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 531 ~~~~~-----------~~~~l~~ll~~~Gf~~i~ 553 (570)
.++.. ....+..++...||..+.
T Consensus 83 ~~~d~~~~g~~~~~~~~~~~i~~~~~~~Gf~~~~ 116 (323)
T 1boo_A 83 DFGGAYMKGVPARSIYNFRVLIRMIDEVGFFLAE 116 (323)
T ss_dssp EECCCEETTEEEECCHHHHHHHHHHHTTCCEEEE
T ss_pred EECCEecCCCcccccchHHHHHHHHHhCCCEEEE
Confidence 88765 133455667889987643
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0012 Score=65.28 Aligned_cols=135 Identities=10% Similarity=0.102 Sum_probs=77.9
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC-CCEEEEEc-cc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN-IPIKFIKS-NW 460 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~-~~v~~~~~-D~ 460 (570)
+..|.+........++.+||||||++|.++..++.... ...|+|+|+-..--+.=+ ..+. ++ .-|.|..+ |+
T Consensus 80 ~~KL~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P~-~~~q----l~w~lV~~~~~~Dv 153 (321)
T 3lkz_A 80 TAKLRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEPQ-LVQS----YGWNIVTMKSGVDV 153 (321)
T ss_dssp HHHHHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCCC-CCCB----TTGGGEEEECSCCT
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCcc-hhhh----cCCcceEEEeccCH
Confidence 34555555444556778999999999999998876643 457999999765110000 0000 11 12888888 87
Q ss_pred ccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC-eEEEEEEcCCCHHH
Q psy2395 461 YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN-GLLLIEHGYNQSNL 539 (570)
Q Consensus 461 ~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~ 539 (570)
.. ++. .++|+|+|+-- -..+.. .+ +.... ...++.+.+.|++| |-|++-+-....+.
T Consensus 154 ~~-l~~--~~~D~ivcDig-eSs~~~-----~v------------e~~Rt-l~vLel~~~wL~~~~~~f~~KVl~pY~~~ 211 (321)
T 3lkz_A 154 FY-RPS--ECCDTLLCDIG-ESSSSA-----EV------------EEHRT-IRVLEMVEDWLHRGPREFCVKVLCPYMPK 211 (321)
T ss_dssp TS-SCC--CCCSEEEECCC-CCCSCH-----HH------------HHHHH-HHHHHHHHHHHTTCCCEEEEEESCTTSHH
T ss_pred hh-CCC--CCCCEEEEECc-cCCCCh-----hh------------hhhHH-HHHHHHHHHHhccCCCcEEEEEcCCCChH
Confidence 44 332 57999999753 111100 00 00011 23777778889988 88877443333333
Q ss_pred HHHHHH
Q psy2395 540 VRKLLF 545 (570)
Q Consensus 540 l~~ll~ 545 (570)
+.+.+.
T Consensus 212 v~e~l~ 217 (321)
T 3lkz_A 212 VIEKME 217 (321)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 434443
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0024 Score=66.44 Aligned_cols=130 Identities=11% Similarity=0.025 Sum_probs=71.3
Q ss_pred CCEEEEECCcccHHHHHHHHh----------------cCCCcEEEEEeCC-----------HHHHHHHHHHHHhhcccCC
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIY----------------SKNKIEIIATDIS-----------KFALKIAKKNAKKKLTKYN 450 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~----------------~~~~~~V~gvDis-----------~~al~~A~~n~~~~~~~~~ 450 (570)
..+|+|+|||+|..++.+... -++..+|+..|+- |...+.+++. .+ ..
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g--~~ 127 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NG--RK 127 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TC--CC
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---cc--CC
Confidence 578999999999998887654 0235789999987 4444332221 11 11
Q ss_pred CCEEEEEcccccc--cccCCCceeEEEECCCCCCCCCcc-cCCCC--ccc-cccccccccCCC-----------hHHHHH
Q psy2395 451 IPIKFIKSNWYNN--LQNYKKLFNIIVANPPYIPKGDIH-LNKGD--LRF-EPINALTDYSNG-----------LSSIKE 513 (570)
Q Consensus 451 ~~v~~~~~D~~~~--l~~~~~~fD~Iv~NPPy~~~~~~~-~~~~~--~~~-ep~~al~~~~~g-----------l~~~~~ 513 (570)
.+..|+.|..-.. ...+.++||+|++|-..+.-.... ..... ..+ .-.. ....... ...+..
T Consensus 128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i-~i~~~sp~~v~~ay~~Qf~~D~~~ 206 (384)
T 2efj_A 128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCI-YSSKASRPPIQKAYLDQFTKDFTT 206 (384)
T ss_dssp TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCS-SSCTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCce-EecCCCCHHHHHHHHHHHHHHHHH
Confidence 2335555543221 223458999999986655433221 10000 000 0000 0000000 012445
Q ss_pred HHHHHhhccccCeEEEEEEc
Q psy2395 514 IVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 514 ~l~~~~~~LkpgG~l~~~~~ 533 (570)
|++...+.|+|||.+++.++
T Consensus 207 FL~~Ra~eL~pGG~mvl~~~ 226 (384)
T 2efj_A 207 FLRIHSEELISRGRMLLTFI 226 (384)
T ss_dssp HHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHhccCCeEEEEEe
Confidence 78888999999999999764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0006 Score=70.28 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=48.9
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
+..|||||.|.|.++..|+.... ..+|+++|+++..+...+... . ..+++++.+|+++.
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E-----GSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T-----TSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c-----CCCEEEEECCccch
Confidence 57999999999999999997642 358999999999998887765 2 24699999999653
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=70.28 Aligned_cols=89 Identities=20% Similarity=0.218 Sum_probs=60.5
Q ss_pred EEEEEcccccccccC-CCceeEEEECCCCCCC-CCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 453 IKFIKSNWYNNLQNY-KKLFNIIVANPPYIPK-GDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 453 v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~-~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
..++++|+++.+... +++||+|+++|||... ..... + ....+-+.++..++..+.++|+|+|.+++
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~------~------~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v 72 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDS------F------DSHNEFLAFTYRWIDKVLDKLDKDGSLYI 72 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGC------C------SSHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccc------c------CCHHHHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 357899987765432 3689999999999753 11100 0 01111234667888889999999999999
Q ss_pred EEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 531 EHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 531 ~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
.+.......+..++.+.||....
T Consensus 73 ~~~d~~~~~~~~~~~~~gf~~~~ 95 (260)
T 1g60_A 73 FNTPFNCAFICQYLVSKGMIFQN 95 (260)
T ss_dssp EECHHHHHHHHHHHHHTTCEEEE
T ss_pred EcCcHHHHHHHHHHHhhccceeE
Confidence 87655556667778888986543
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0026 Score=66.08 Aligned_cols=134 Identities=7% Similarity=0.055 Sum_probs=69.8
Q ss_pred CCEEEEECCcccHHHHHHH--------Hhc------CCCcEEEEEeCCHHHHHHHHHHHHhhcc---------cCCCC--
Q psy2395 398 KIKLLEMGTGSGAIAIAIA--------IYS------KNKIEIIATDISKFALKIAKKNAKKKLT---------KYNIP-- 452 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la--------~~~------~~~~~V~gvDis~~al~~A~~n~~~~~~---------~~~~~-- 452 (570)
+.+|+|+|||+|..++.++ +.+ ++..+|+..|+-.......=+.+..... ....+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 5789999999999988873 121 2357899999866554333222221100 00001
Q ss_pred -EEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccc-----cccccccC-CC--------hHHHHHHHHH
Q psy2395 453 -IKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEP-----INALTDYS-NG--------LSSIKEIVKN 517 (570)
Q Consensus 453 -v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep-----~~al~~~~-~g--------l~~~~~~l~~ 517 (570)
+.-+-+.+..- ..++++||+|+||-..+.-......-.+. ..| +.-..... .- ...+..+++.
T Consensus 133 f~~gvpgSFy~r-lfP~~S~d~v~Ss~aLHWls~~p~~l~~~-~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 133 FVAGVPGSFYRR-LFPARTIDFFHSAFSLHWLSQVPESVTDR-RSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp EEEEEESCTTSC-CSCTTCEEEEEEESCTTBCSSCCGGGGCT-TSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcc-cCCCcceEEEEecceeeeeccCchhhhcc-ccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333322 23458999999986655432211000000 000 00000000 00 0234567888
Q ss_pred HhhccccCeEEEEEEc
Q psy2395 518 ASKYLVKNGLLLIEHG 533 (570)
Q Consensus 518 ~~~~LkpgG~l~~~~~ 533 (570)
.++.|+|||.+++.+.
T Consensus 211 ra~eL~pGG~mvl~~~ 226 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCL 226 (374)
T ss_dssp HHHHEEEEEEEEEEEE
T ss_pred HHHHhCCCCEEEEEEe
Confidence 8999999999998663
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0031 Score=64.37 Aligned_cols=148 Identities=20% Similarity=0.161 Sum_probs=88.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEE-EEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc--CCCceeE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEI-IATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--YKKLFNI 473 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V-~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~ 473 (570)
...+++|++||.|.+++.+...+-....| .++|+++.+++.-+.|... . ++++|+.+.... ....+|+
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~----~~~~DI~~~~~~~i~~~~~Di 79 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E----VQVKNLDSISIKQIESLNCNT 79 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C----CBCCCTTTCCHHHHHHTCCCE
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C----cccCChhhcCHHHhccCCCCE
Confidence 45689999999999999998765211356 7999999999999999752 1 567888653221 0126999
Q ss_pred EEECCCCCCC--CCcccCCCCccccccccccccCCCh-HHHHHHHHHHhhcc--ccCeEEEEEEcC-----CCHHHHHHH
Q psy2395 474 IVANPPYIPK--GDIHLNKGDLRFEPINALTDYSNGL-SSIKEIVKNASKYL--VKNGLLLIEHGY-----NQSNLVRKL 543 (570)
Q Consensus 474 Iv~NPPy~~~--~~~~~~~~~~~~ep~~al~~~~~gl-~~~~~~l~~~~~~L--kpgG~l~~~~~~-----~~~~~l~~l 543 (570)
++..||--+. .... ... +..+.- ..+..+++.+.+.+ +|. ++++|--. .....+.+.
T Consensus 80 l~ggpPCQ~fs~S~ag---~~~---------~~~d~r~~L~~~~~r~~i~~~~~~P~-~~~lENV~gl~~~~~~~~i~~~ 146 (327)
T 3qv2_A 80 WFMSPPCQPYNNSIMS---KHK---------DINDPRAKSVLHLYRDILPYLINKPK-HIFIENVPLFKESLVFKEIYNI 146 (327)
T ss_dssp EEECCCCTTCSHHHHT---TTC---------TTTCGGGHHHHHHHHTTGGGCSSCCS-EEEEEECGGGGGSHHHHHHHHH
T ss_pred EEecCCccCcccccCC---CCC---------CCccccchhHHHHHHHHHHHhccCCC-EEEEEchhhhcChHHHHHHHHH
Confidence 9999995433 1100 000 001111 23344444233445 554 45555321 124567778
Q ss_pred HHHCCCeeEEEEec---C---CCCceEEE
Q psy2395 544 LFKYGFSDIKSWRD---L---SGIERVTQ 566 (570)
Q Consensus 544 l~~~Gf~~i~~~~D---~---~g~~R~~~ 566 (570)
|.+.||..-...-+ + +.+.|+++
T Consensus 147 l~~~GY~v~~~vl~a~~yGvPQ~R~R~fi 175 (327)
T 3qv2_A 147 LIKNQYYIKDIICSPIDIGIPNSRTRYYV 175 (327)
T ss_dssp HHHTTCEEEEEEECGGGGTCSBCCCEEEE
T ss_pred HHhCCCEEEEEEEeHHHcCCCccceEEEE
Confidence 88999986443322 2 44667764
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.002 Score=65.93 Aligned_cols=147 Identities=20% Similarity=0.126 Sum_probs=88.6
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc--CCCceeEEEE
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--YKKLFNIIVA 476 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--~~~~fD~Iv~ 476 (570)
.+++|++||.|.+++.+...+.....|.++|+++.+++.-+.|... ..++.+|+.+.... ....+|+++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~--------~~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE--------TNLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT--------SCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC--------CceeccccccCCHHHhccCCCCEEEe
Confidence 4899999999999999987653113578999999999998888652 34677888653221 1136999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc-cCeEEEEEEcCC-----CHHHHHHHHHHCCCe
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV-KNGLLLIEHGYN-----QSNLVRKLLFKYGFS 550 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk-pgG~l~~~~~~~-----~~~~l~~ll~~~Gf~ 550 (570)
.||--+.+...... . ..+++. ..+..+++.+ +.++ |. ++++|--.. ....+.+.|.+.||.
T Consensus 76 gpPCQ~fS~ag~~~-~-~~d~r~---------~L~~~~~r~i-~~~~~P~-~~vlENV~gl~~~~~~~~i~~~l~~~GY~ 142 (333)
T 4h0n_A 76 SPPCQPFTRNGKYL-D-DNDPRT---------NSFLYLIGIL-DQLDNVD-YILMENVKGFENSTVRNLFIDKLKECNFI 142 (333)
T ss_dssp CCCCCCSEETTEEC-C-TTCTTS---------CCHHHHHHHG-GGCTTCC-EEEEEECTTGGGSHHHHHHHHHHHHTTEE
T ss_pred cCCCcchhhhhhcc-C-CcCccc---------ccHHHHHHHH-HHhcCCC-EEEEecchhhhhhhHHHHHHHHHHhCCCe
Confidence 99954432110000 0 001111 1234444433 3454 64 455554221 246778888899998
Q ss_pred eEEEEecC------CCCceEEE
Q psy2395 551 DIKSWRDL------SGIERVTQ 566 (570)
Q Consensus 551 ~i~~~~D~------~g~~R~~~ 566 (570)
.-...-+. +.+.|+++
T Consensus 143 v~~~vl~a~~~GvPQ~R~R~fi 164 (333)
T 4h0n_A 143 YQEFLLCPSTVGVPNSRLRYYC 164 (333)
T ss_dssp EEEEEECTTTTTCSCCCCEEEE
T ss_pred EEEEEecHHHcCCCccceEEEE
Confidence 75444332 44567654
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0014 Score=66.80 Aligned_cols=87 Identities=14% Similarity=0.144 Sum_probs=59.9
Q ss_pred CEEEE-EcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 452 PIKFI-KSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 452 ~v~~~-~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
...++ ++|+++.+... +++||+|+++|||....+. + ....+-+..+...+..+.++|+|||.++
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~--------~------~~~~~~~~~~~~~l~~~~rvLk~~G~i~ 103 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD--------W------DDHMDYIGWAKRWLAEAERVLSPTGSIA 103 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG--------G------GTCSSHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCC--------c------cCHHHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 36778 99998765433 3689999999999743110 0 0011224567788888999999999999
Q ss_pred EEEcCCCH--------HHHHHHHHHCC-CeeE
Q psy2395 530 IEHGYNQS--------NLVRKLLFKYG-FSDI 552 (570)
Q Consensus 530 ~~~~~~~~--------~~l~~ll~~~G-f~~i 552 (570)
+.++.... ..+...+...| |..+
T Consensus 104 i~~~~~~~~~~~~~~l~~l~~~i~~~G~~~~~ 135 (319)
T 1eg2_A 104 IFGGLQYQGEAGSGDLISIISHMRQNSKMLLA 135 (319)
T ss_dssp EEECSCCCCCTTBCCHHHHHHHHHHHCCCEEE
T ss_pred EEcCcccccccccccHHHHHHHHhCcccceeE
Confidence 98876544 56666666667 7653
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0075 Score=67.86 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=85.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-------C----CCcEEEEEeCCHHHHHHHHHH--------------HHhh-----c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-------K----NKIEIIATDISKFALKIAKKN--------------AKKK-----L 446 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-------~----~~~~V~gvDis~~al~~A~~n--------------~~~~-----~ 446 (570)
+..+|+|+|.|+|...+.+.+.+ | ...+++++|..|-..+.+++- +... +
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 45699999999999988876543 1 126799999955333333321 1111 0
Q ss_pred -----c-cCCCCEEEEEcccccccccC----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 447 -----T-KYNIPIKFIKSNWYNNLQNY----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 447 -----~-~~~~~v~~~~~D~~~~l~~~----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
. .....++++.||+.+.++.. ...||+++.++ |-+.... .+ .-..++.
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~-f~p~~np-----------~~----------w~~~~~~ 195 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDG-FAPAKNP-----------DM----------WNEQLFN 195 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECS-SCC--CC-----------TT----------CSHHHHH
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECC-CCCCCCh-----------hh----------hhHHHHH
Confidence 0 01235788999998777654 36899999986 3322111 00 0156777
Q ss_pred HHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 517 NASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
.+.++++|||.+.- +.....+++.+.++||....
T Consensus 196 ~l~~~~~~g~~~~t---~~~~~~vr~~l~~aGf~~~~ 229 (689)
T 3pvc_A 196 AMARMTRPGGTFST---FTAAGFVRRGLQQAGFNVTK 229 (689)
T ss_dssp HHHHHEEEEEEEEE---SCCCHHHHHHHHHTTCEEEE
T ss_pred HHHHHhCCCCEEEe---ccCcHHHHHHHHhCCeEEEe
Confidence 78889999998753 33446789999999998654
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0025 Score=65.81 Aligned_cols=133 Identities=11% Similarity=0.149 Sum_probs=76.1
Q ss_pred CCCEEEEECCcccHHHHHHHHh---------------cCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc---
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIY---------------SKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS--- 458 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~---------------~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~--- 458 (570)
...+|+|+||++|..++.+... -++..+|+..|+-......+-+++.... ...+..|+.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpg 128 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPG 128 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEES
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecch
Confidence 3468999999999877665433 2346789999998888777766654210 0012344444
Q ss_pred ccccccccCCCceeEEEECCCCCCCCCcc-cCCCCc--cc----cccccccccC-CChHHHHHHHHHHhhccccCeEEEE
Q psy2395 459 NWYNNLQNYKKLFNIIVANPPYIPKGDIH-LNKGDL--RF----EPINALTDYS-NGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 459 D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~-~~~~~~--~~----ep~~al~~~~-~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.+.. ...+.+++|+|+||-..+.-.... ...... -| .|..+..... .-...+..|++...+.|+|||.+++
T Consensus 129 SFy~-rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl 207 (359)
T 1m6e_X 129 SFYG-RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL 207 (359)
T ss_dssp CSSS-CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred hhhh-ccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 3332 233458999999986554332211 110000 00 0110000000 0013456788999999999999998
Q ss_pred EE
Q psy2395 531 EH 532 (570)
Q Consensus 531 ~~ 532 (570)
.+
T Consensus 208 ~~ 209 (359)
T 1m6e_X 208 TI 209 (359)
T ss_dssp EE
T ss_pred EE
Confidence 66
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0039 Score=63.45 Aligned_cols=144 Identities=16% Similarity=0.088 Sum_probs=87.9
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|+|++||.|.+++.+.+.+ ---|.++|+++.+++.-+.|.. -.++.+|+.+.....-..+|+++.-|
T Consensus 1 mkvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~~---------~~~~~~DI~~i~~~~~~~~D~l~ggp 69 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNHS---------AKLIKGDISKISSDEFPKCDGIIGGP 69 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHCC---------SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred CeEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHCC---------CCcccCChhhCCHhhCCcccEEEecC
Confidence 379999999999999987765 2457899999999998887753 25788999664332225799999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-----C---CHHHHHHHHHHCCCe
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-----N---QSNLVRKLLFKYGFS 550 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-----~---~~~~l~~ll~~~Gf~ 550 (570)
|--+.+...... -..+|+. ..+..+++ +.+.++|. ++++|--. . ....+.+.|.+.||.
T Consensus 70 PCQ~fS~ag~~~--g~~d~R~---------~L~~~~~r-~i~~~~Pk-~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~ 136 (331)
T 3ubt_Y 70 PSQSWSEGGSLR--GIDDPRG---------KLFYEYIR-ILKQKKPI-FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYD 136 (331)
T ss_dssp CGGGTEETTEEC--CTTCGGG---------HHHHHHHH-HHHHHCCS-EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEE
T ss_pred CCCCcCCCCCcc--CCCCchh---------HHHHHHHH-HHhccCCe-EEEeeeecccccccccchhhhhhhhhccCCcE
Confidence 854322100000 0011111 23444444 33356886 45555321 1 235566778888987
Q ss_pred eEEEEe---cC---CCCceEEE
Q psy2395 551 DIKSWR---DL---SGIERVTQ 566 (570)
Q Consensus 551 ~i~~~~---D~---~g~~R~~~ 566 (570)
.-...- |+ +.+.|+++
T Consensus 137 v~~~vlna~~yGvPQ~R~Rvfi 158 (331)
T 3ubt_Y 137 VHIILLNANDYGVAQDRKRVFY 158 (331)
T ss_dssp EEEEEEEGGGTTCSBCCEEEEE
T ss_pred EEEEecccccCCCCcccceEEE
Confidence 643332 22 45667654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.026 Score=63.20 Aligned_cols=132 Identities=13% Similarity=0.168 Sum_probs=85.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-----------CCCcEEEEEeC---CHHHHHHHHH-----------HHHhh-----c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-----------KNKIEIIATDI---SKFALKIAKK-----------NAKKK-----L 446 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-----------~~~~~V~gvDi---s~~al~~A~~-----------n~~~~-----~ 446 (570)
+.-+|+|+|-|+|...+...+.+ ....+++++|. +++-+..+-. ..... +
T Consensus 66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (676)
T 3ps9_A 66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 145 (676)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence 34689999999999887776543 11257999999 6666653322 11111 0
Q ss_pred -----c-cCCCCEEEEEcccccccccC----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHH
Q psy2395 447 -----T-KYNIPIKFIKSNWYNNLQNY----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVK 516 (570)
Q Consensus 447 -----~-~~~~~v~~~~~D~~~~l~~~----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~ 516 (570)
. .....+++..+|+.+.++.. ...||+|+.++ |.+... |.+ .-..++.
T Consensus 146 ~~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~-f~p~~n-----------p~~----------w~~~~~~ 203 (676)
T 3ps9_A 146 CHRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDG-FAPAKN-----------PDM----------WTQNLFN 203 (676)
T ss_dssp EEEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECC-SCGGGC-----------GGG----------SCHHHHH
T ss_pred ceEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECC-CCCcCC-----------hhh----------hhHHHHH
Confidence 0 01234678889997766644 36799999986 332211 110 0156788
Q ss_pred HHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEE
Q psy2395 517 NASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 517 ~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
.+.++++|||.+.- +.....+++.+.++||..-.
T Consensus 204 ~l~~~~~~g~~~~t---~~~~~~vr~~L~~aGf~v~~ 237 (676)
T 3ps9_A 204 AMARLARPGGTLAT---FTSAGFVRRGLQDAGFTMQK 237 (676)
T ss_dssp HHHHHEEEEEEEEE---SCCCHHHHHHHHHHTCEEEE
T ss_pred HHHHHhCCCCEEEe---ccCcHHHHHHHHhCCeEEEe
Confidence 88889999998763 33446789999999997543
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0048 Score=62.04 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=58.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-C--CCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIE-IIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-Y--KKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~-V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~--~~~f 471 (570)
..+.+++|++||.|.+++.+...+- ... |+++|+++.+++.-+.|.. ...++.+|+.+.... . .+.+
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~~--------~~~~~~~DI~~i~~~~i~~~~~~ 84 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRHQ--------GKIMYVGDVRSVTQKHIQEWGPF 84 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHTT--------TCEEEECCGGGCCHHHHHHTCCC
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhCC--------CCceeCCChHHccHHHhcccCCc
Confidence 3566999999999999999887653 233 6999999999988887753 135788998664321 0 1469
Q ss_pred eEEEECCCCCCC
Q psy2395 472 NIIVANPPYIPK 483 (570)
Q Consensus 472 D~Iv~NPPy~~~ 483 (570)
|+++..||.-+.
T Consensus 85 Dll~ggpPCQ~f 96 (295)
T 2qrv_A 85 DLVIGGSPCNDL 96 (295)
T ss_dssp SEEEECCCCGGG
T ss_pred CEEEecCCCccc
Confidence 999999997543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0044 Score=63.17 Aligned_cols=70 Identities=13% Similarity=0.086 Sum_probs=52.2
Q ss_pred HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 386 l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
|++.++.....++..|||.+||||..+++..+.+ .+.+|+|+++.+++.|++++.. .......+++|+.+
T Consensus 241 l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~g---r~~ig~e~~~~~~~~~~~r~~~----~~~~~~~~~~~~~~ 310 (323)
T 1boo_A 241 LPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFLD----NNISEEKITDIYNR 310 (323)
T ss_dssp HHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGSC----SCSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHcC---CCEEEEeCCHHHHHHHHHHHHh----cccchHHHHHHHHH
Confidence 4444444445678899999999999999988664 5899999999999999998874 23334455555533
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0057 Score=62.20 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCH---HHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISK---FALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~---~al~~A~~n~~~ 444 (570)
..|++.++.....++..|||.+||||..++++.+.+ .+.+|+|+++ ..++.|++++..
T Consensus 229 ~~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~---r~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 229 AAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp HHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHcC---CcEEEEECCccHHHHHHHHHHHHHH
Confidence 445555555545678899999999999999988775 5899999999 999999998865
|
| >2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.073 Score=43.26 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCcccc-CCHHHHHHHHHHHhhhhhHHH-HHHHH
Q psy2395 4 LMLSKLEKFSKRLKELDFLLTQKEVH-NNIKDYCKKVREHSFLYPIVE-LYNNY 55 (570)
Q Consensus 4 ~~~~~l~~~~~r~~~l~~~l~~p~~w-~d~~~~~~l~ke~~~L~~~v~-~~~~~ 55 (570)
.|-..|+.+..+..+|+..|+||+|. +|+.+..++.+++..++.-++ .|.+|
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999987 689999999998888776554 34444
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.012 Score=63.02 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=56.9
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc------------
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ------------ 465 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~------------ 465 (570)
..+++|++||.|.+++.+.+.+ ...|+++|+++.+++.-+.|... .....++++|+.+...
T Consensus 88 ~~~viDLFaG~GGlslG~~~aG--~~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (482)
T 3me5_A 88 AFRFIDLFAGIGGIRRGFESIG--GQCVFTSEWNKHAVRTYKANHYC-----DPATHHFNEDIRDITLSHQEGVSDEAAA 160 (482)
T ss_dssp SEEEEEESCTTSHHHHHHHTTT--EEEEEEECCCHHHHHHHHHHSCC-----CTTTCEEESCTHHHHCTTCTTSCHHHHH
T ss_pred cceEEEecCCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHhccc-----CCCcceeccchhhhhhccccccchhhHH
Confidence 4689999999999999987654 23589999999999988888631 1234567788865431
Q ss_pred ----cCCCceeEEEECCCCCC
Q psy2395 466 ----NYKKLFNIIVANPPYIP 482 (570)
Q Consensus 466 ----~~~~~fD~Iv~NPPy~~ 482 (570)
.....+|+|+.-||--+
T Consensus 161 ~~i~~~~~~~Dvl~gGpPCQ~ 181 (482)
T 3me5_A 161 EHIRQHIPEHDVLLAGFPCQP 181 (482)
T ss_dssp HHHHHHSCCCSEEEEECCCCC
T ss_pred hhhhhcCCCCCEEEecCCCcc
Confidence 11146899999998543
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.085 Score=55.37 Aligned_cols=63 Identities=8% Similarity=0.087 Sum_probs=49.5
Q ss_pred CCCCEEEEECCcccHHHHHHH-HhcCCCcEEEEEeCCHHHHHHHHHHHHh--hcccCC-CCEEEEEccc
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIA-IYSKNKIEIIATDISKFALKIAKKNAKK--KLTKYN-IPIKFIKSNW 460 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la-~~~~~~~~V~gvDis~~al~~A~~n~~~--~~~~~~-~~v~~~~~D~ 460 (570)
+++..|+|+||+.|..++.++ +..++..+|+++|.+|...+..++|+.. |. .. .+++++..-+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~--~~~~~v~~~~~al 291 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT--NFASRITVHGCGA 291 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS--TTGGGEEEECSEE
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhcc--CCCCCEEEEEeEE
Confidence 467899999999999999988 5554347999999999999999999986 31 12 4577665544
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.36 Score=47.14 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=79.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHh------cCCCcEEEEEeC-----CH----------------------HHHHHHHH--
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIY------SKNKIEIIATDI-----SK----------------------FALKIAKK-- 440 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~------~~~~~~V~gvDi-----s~----------------------~al~~A~~-- 440 (570)
.-+..|+|+||-.|..++.++.. .....+|+|+|. .+ +.+.....
T Consensus 68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 44679999999999988887643 112578999992 21 01111111
Q ss_pred -HHHhhcccCCCCEEEEEccccccccc-----CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHH
Q psy2395 441 -NAKKKLTKYNIPIKFIKSNWYNNLQN-----YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEI 514 (570)
Q Consensus 441 -n~~~~~~~~~~~v~~~~~D~~~~l~~-----~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~ 514 (570)
|....+ ....++.++.|++.+.++. +..+||+|..+-- -.+.+...
T Consensus 148 ~~~~~~g-~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D---------------------------~Y~~t~~~ 199 (257)
T 3tos_A 148 ECSDFFG-HVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLD---------------------------LYEPTKAV 199 (257)
T ss_dssp HTTSTTT-TSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCC---------------------------CHHHHHHH
T ss_pred hhhhhcC-CCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCc---------------------------ccchHHHH
Confidence 111111 0135799999999876653 2347999998531 12345677
Q ss_pred HHHHhhccccCeEEEEE-Ec--CCC--HHHHHHHHHHCCCee
Q psy2395 515 VKNASKYLVKNGLLLIE-HG--YNQ--SNLVRKLLFKYGFSD 551 (570)
Q Consensus 515 l~~~~~~LkpgG~l~~~-~~--~~~--~~~l~~ll~~~Gf~~ 551 (570)
++.+...|+|||++++. ++ ... ...+.+++.+.|.+.
T Consensus 200 le~~~p~l~~GGvIv~DD~~~~~w~G~~~A~~ef~~~~~~~i 241 (257)
T 3tos_A 200 LEAIRPYLTKGSIVAFDELDNPKWPGENIAMRKVLGLDHAPL 241 (257)
T ss_dssp HHHHGGGEEEEEEEEESSTTCTTCTHHHHHHHHHTCTTSSCC
T ss_pred HHHHHHHhCCCcEEEEcCCCCCCChHHHHHHHHHHhhCCCeE
Confidence 88889999999999983 22 122 344566666666553
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.47 Score=49.53 Aligned_cols=46 Identities=17% Similarity=-0.036 Sum_probs=36.9
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcE----EEEEeCCHHHHHHHHHHHH
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIE----IIATDISKFALKIAKKNAK 443 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~----V~gvDis~~al~~A~~n~~ 443 (570)
..+|+|++||.|.+...+.+.+.+..- |.++|+++.++..-+.|..
T Consensus 10 ~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~ 59 (403)
T 4dkj_A 10 VIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred cceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence 458999999999999998765410113 7889999999999888875
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.094 Score=53.24 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE--cccccccccCCCcee
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK--SNWYNNLQNYKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~--~D~~~~l~~~~~~fD 472 (570)
.++.+||-.|+|. |.+++.+|+.. +++|+++|.+++.++.+++. +....+-. .|+.+.+....+.+|
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l--------Ga~~~i~~~~~~~~~~~~~~~g~~d 234 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARRL--------GAEVAVNARDTDPAAWLQKEIGGAH 234 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT--------TCSEEEETTTSCHHHHHHHHHSSEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHc--------CCCEEEeCCCcCHHHHHHHhCCCCC
Confidence 5678999999985 88888998876 57999999999998887542 22221211 122111111114689
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+|+-+.. . ...++.+.+.|+++|.+++
T Consensus 235 ~vid~~g------------------------~-------~~~~~~~~~~l~~~G~iv~ 261 (340)
T 3s2e_A 235 GVLVTAV------------------------S-------PKAFSQAIGMVRRGGTIAL 261 (340)
T ss_dssp EEEESSC------------------------C-------HHHHHHHHHHEEEEEEEEE
T ss_pred EEEEeCC------------------------C-------HHHHHHHHHHhccCCEEEE
Confidence 9887421 0 2456677779999999875
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.16 Score=52.33 Aligned_cols=43 Identities=30% Similarity=0.368 Sum_probs=35.8
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++.+||-+|||. |.+++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~--Ga~~Vi~~~~~~~~~~~a~~ 233 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQ 233 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence 5678999999986 88888888776 35 79999999999988864
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.15 Score=59.16 Aligned_cols=77 Identities=13% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc------------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN------------L 464 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~------------l 464 (570)
...+++|++||.|.+++.+.+.+- .-.+.|+|+++.+++.-+.|... ..++.+|+.+. .
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N~p~--------~~~~~~DI~~l~~~~~~~di~~~~ 609 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLNNPG--------STVFTEDCNILLKLVMAGETTNSR 609 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHHCTT--------SEEECSCHHHHHHHHHHTCSBCTT
T ss_pred CCCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhCCC--------CccccccHHHHhhhccchhhhhhh
Confidence 346899999999999999877652 13578999999999988877542 34566665321 0
Q ss_pred c--c-CCCceeEEEECCCCCC
Q psy2395 465 Q--N-YKKLFNIIVANPPYIP 482 (570)
Q Consensus 465 ~--~-~~~~fD~Iv~NPPy~~ 482 (570)
. . ..+.+|+|+.-||--.
T Consensus 610 ~~~lp~~~~vDll~GGpPCQ~ 630 (1002)
T 3swr_A 610 GQRLPQKGDVEMLCGGPPCQG 630 (1002)
T ss_dssp CCBCCCTTTCSEEEECCCCTT
T ss_pred hhhcccCCCeeEEEEcCCCcc
Confidence 0 0 1247999999999543
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=1.5 Score=49.67 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=36.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcC---C-CcEEEEEeCCHHHHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSK---N-KIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~---~-~~~V~gvDis~~al~~A~~n~~ 443 (570)
+..+|+||+||.|.++.-+.+.+. . ---+.++|+++.|++.-+.|..
T Consensus 211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp 261 (784)
T 4ft4_B 211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP 261 (784)
T ss_dssp EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence 456899999999999988865531 0 0257899999999998888853
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.21 Score=49.00 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=46.9
Q ss_pred CceeEEEEC--CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCC--CHHHHHHH
Q psy2395 469 KLFNIIVAN--PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYN--QSNLVRKL 543 (570)
Q Consensus 469 ~~fD~Iv~N--PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~--~~~~l~~l 543 (570)
+++|+|++| |||.-.. |.. . .|....+.-++..+..+|+|||.+++-. +.. ..+.+...
T Consensus 205 ~k~DvV~SDMApn~sGh~----------yqQ--C----~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~ 268 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHH----------YQQ--C----EDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGA 268 (320)
T ss_dssp CCEEEEEEECCCCCCSCH----------HHH--H----HHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHH
T ss_pred CcCCEEEEcCCCCCCCcc----------ccc--c----chHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHH
Confidence 679999998 6654211 000 0 0111233347788899999999998844 444 46777777
Q ss_pred HHHCCCeeEEEEecC
Q psy2395 544 LFKYGFSDIKSWRDL 558 (570)
Q Consensus 544 l~~~Gf~~i~~~~D~ 558 (570)
+.+ -|..++..+--
T Consensus 269 LaR-~F~~Vr~vKP~ 282 (320)
T 2hwk_A 269 IAR-QFKFSRVCKPK 282 (320)
T ss_dssp HHT-TEEEEEEECCT
T ss_pred HHH-hcceeeeeCCC
Confidence 765 59888887753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.55 Score=47.85 Aligned_cols=44 Identities=27% Similarity=0.379 Sum_probs=35.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
..++.+||-+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 214 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE 214 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 35678999999885 77888888775 45 99999999998888763
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.06 E-value=0.79 Score=46.56 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..++.+||-+|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~ 210 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN 210 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH
Confidence 35678999999874 77777888765 5689999999999888763
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.77 Score=46.54 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=46.5
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..++.+||-+|+|. |.+++.+|+.. +++|+++|.+++-++.+++. +....+ .|. +.+ ...+|+
T Consensus 174 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~l--------Ga~~v~--~~~-~~~---~~~~D~ 237 (348)
T 3two_A 174 VTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALSM--------GVKHFY--TDP-KQC---KEELDF 237 (348)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHHT--------TCSEEE--SSG-GGC---CSCEEE
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhc--------CCCeec--CCH-HHH---hcCCCE
Confidence 35788999999875 77788888876 57999999999988877641 222222 332 212 137999
Q ss_pred EEEC
Q psy2395 474 IVAN 477 (570)
Q Consensus 474 Iv~N 477 (570)
|+-.
T Consensus 238 vid~ 241 (348)
T 3two_A 238 IIST 241 (348)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9974
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.69 E-value=0.76 Score=47.16 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=36.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..++.+||-+|+|. |.+++.+|+.. +++|+++|.+++.++.+++
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~ 236 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA 236 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 35678999999984 77788888775 5789999999999888864
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=0.76 Score=47.18 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=35.9
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
..++.+||-.|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 180 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 225 (370)
T 4ej6_A 180 IKAGSTVAILGGGVIGLLTVQLARLA--GATTVILSTRQATKRRLAEE 225 (370)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 35788999999875 77788888776 45 99999999999888865
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.31 Score=49.19 Aligned_cols=95 Identities=11% Similarity=0.081 Sum_probs=60.1
Q ss_pred CCCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE--cccccccc-cCCC
Q psy2395 395 FEKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK--SNWYNNLQ-NYKK 469 (570)
Q Consensus 395 ~~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~--~D~~~~l~-~~~~ 469 (570)
..++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.+.+.+ +....+-. .|+.+.+. ...+
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~ 217 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVEEL-------GFDGAIDYKNEDLAAGLKRECPK 217 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT-------CCSEEEETTTSCHHHHHHHHCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHc-------CCCEEEECCCHHHHHHHHHhcCC
Confidence 357889999998 5677777777765 579999999998877763222 22211211 12211111 1124
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.+|+|+.+.. ...+..+.+.|+++|.+++
T Consensus 218 ~~d~vi~~~g--------------------------------~~~~~~~~~~l~~~G~iv~ 246 (336)
T 4b7c_A 218 GIDVFFDNVG--------------------------------GEILDTVLTRIAFKARIVL 246 (336)
T ss_dssp CEEEEEESSC--------------------------------HHHHHHHHTTEEEEEEEEE
T ss_pred CceEEEECCC--------------------------------cchHHHHHHHHhhCCEEEE
Confidence 6999988531 1356677789999998875
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=89.89 E-value=0.46 Score=47.88 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=32.1
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A 438 (570)
.++.+||-.|| |.|..+..+++.. +++|+++|.+++.++.+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~ 186 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYL 186 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHH
Confidence 46789999998 5666666666654 57999999999888776
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=89.86 E-value=1 Score=45.84 Aligned_cols=45 Identities=29% Similarity=0.285 Sum_probs=36.7
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIE-IIATDISKFALKIAKKN 441 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~-V~gvDis~~al~~A~~n 441 (570)
..++.+||=+|+|. |.+++.+|+.. +++ |+++|.+++.++.+++.
T Consensus 177 ~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~l 223 (363)
T 3m6i_A 177 VRLGDPVLICGAGPIGLITMLCAKAA--GACPLVITDIDEGRLKFAKEI 223 (363)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh
Confidence 35678899999875 77788888876 455 99999999999999876
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=89.73 E-value=0.36 Score=44.55 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=30.9
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.++.+||..|+ |.|.....+++.. +++|+++|.+++.++.++
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS 80 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 46789999994 4566666666554 479999999998876654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.11 Score=66.52 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=50.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCC----CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKN----KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~----~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
.+..+||++|.|+|..+..+...... ....+.+|+|+...+.|++.++.. ++..-.-|..+........|
T Consensus 1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A 1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----C
T ss_pred CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCce
Confidence 45679999999999876655443321 247888999998888888776531 12221112211101112579
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+||+.-..+.. ......+.++.++|+|||++++.
T Consensus 1313 dlvia~~vl~~t-------------------------~~~~~~l~~~~~lL~p~G~l~~~ 1347 (2512)
T 2vz8_A 1313 DLLVCNCALATL-------------------------GDPAVAVGNMAATLKEGGFLLLH 1347 (2512)
T ss_dssp CEEEEECC---------------------------------------------CCEEEEE
T ss_pred eEEEEccccccc-------------------------ccHHHHHHHHHHhcCCCcEEEEE
Confidence 999984221111 12245677888899999998774
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=0.76 Score=46.50 Aligned_cols=96 Identities=13% Similarity=0.161 Sum_probs=61.5
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE-Eccccccccc--CCCc
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI-KSNWYNNLQN--YKKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~-~~D~~~~l~~--~~~~ 470 (570)
..++.+||-+|+|. |.+++.+|+... +.+|+++|.+++-++.+++. +....+- ..|+.+.+.. ....
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~l--------Ga~~~i~~~~~~~~~v~~~t~g~g 239 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAREV--------GADAAVKSGAGAADAIRELTGGQG 239 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHHT--------TCSEEEECSTTHHHHHHHHHGGGC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc--------CCCEEEcCCCcHHHHHHHHhCCCC
Confidence 35678999999875 777888887653 47999999999998888642 2221111 1122121111 0136
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+|+|+-.-. + ...+..+.+.|+++|.+++
T Consensus 240 ~d~v~d~~G------------------------~-------~~~~~~~~~~l~~~G~iv~ 268 (345)
T 3jv7_A 240 ATAVFDFVG------------------------A-------QSTIDTAQQVVAVDGHISV 268 (345)
T ss_dssp EEEEEESSC------------------------C-------HHHHHHHHHHEEEEEEEEE
T ss_pred CeEEEECCC------------------------C-------HHHHHHHHHHHhcCCEEEE
Confidence 999987321 0 2356677779999999876
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=88.78 E-value=1.9 Score=41.67 Aligned_cols=83 Identities=10% Similarity=0.025 Sum_probs=54.4
Q ss_pred CCCEEEEECCccc-HHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------
Q psy2395 397 KKIKLLEMGTGSG-AIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------- 465 (570)
Q Consensus 397 ~~~~VLDlGcGtG-~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------- 465 (570)
+++++|=-|++++ .++..+|+.+ ..+++|+.+|.+++.++.+.+.+... .+.++.++..|+.+...
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQL---NQPEAHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGG---TCSSCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc---CCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4668888886442 2444444322 22589999999999888887776652 34468899999865311
Q ss_pred cCCCceeEEEECCCCCC
Q psy2395 466 NYKKLFNIIVANPPYIP 482 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~ 482 (570)
..-++.|++|.|..+..
T Consensus 82 ~~~G~iD~lvnnAg~~~ 98 (256)
T 4fs3_A 82 KDVGNIDGVYHSIAFAN 98 (256)
T ss_dssp HHHCCCSEEEECCCCCC
T ss_pred HHhCCCCEEEecccccc
Confidence 11168999999976543
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=88.70 E-value=0.53 Score=56.21 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=54.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-------------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN------------- 463 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~------------- 463 (570)
...+++|++||.|.+++.+.+.+. .-.+.++|+++.+++.-+.|... ..++.+|+.+.
T Consensus 850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~p~--------~~~~~~DI~~l~~~~~~gdi~~~~ 920 (1330)
T 3av4_A 850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNPG--------TTVFTEDCNVLLKLVMAGEVTNSL 920 (1330)
T ss_dssp CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHCTT--------SEEECSCHHHHHHHHTTTCSBCSS
T ss_pred CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhCCC--------CcEeeccHHHHhHhhhccchhhhh
Confidence 456899999999999999876541 13588999999999988877532 34555554321
Q ss_pred ---cccCCCceeEEEECCCCCCC
Q psy2395 464 ---LQNYKKLFNIIVANPPYIPK 483 (570)
Q Consensus 464 ---l~~~~~~fD~Iv~NPPy~~~ 483 (570)
++ ..+.+|+|+.-||--..
T Consensus 921 ~~~lp-~~~~vDvl~GGpPCQ~F 942 (1330)
T 3av4_A 921 GQRLP-QKGDVEMLCGGPPCQGF 942 (1330)
T ss_dssp CCBCC-CTTTCSEEEECCCCTTT
T ss_pred hhhcc-ccCccceEEecCCCccc
Confidence 11 12468999999986443
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=1.5 Score=44.26 Aligned_cols=42 Identities=12% Similarity=0.086 Sum_probs=33.6
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.++
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~ 197 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLK 197 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 46789999997 5677777777765 579999999998887775
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=88.15 E-value=0.38 Score=48.70 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=35.6
Q ss_pred CCCCEEEEECCc--ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG--SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcG--tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.|+| .|..++.+++.. +++|+++|.+++.++.+++
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~ 187 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLR 187 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence 567899999987 677788888766 5799999999998888875
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=87.89 E-value=0.77 Score=46.41 Aligned_cols=44 Identities=25% Similarity=0.310 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..++.+||-+|+| .|..++.+++.. +++|+++|.++..++.+++
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~ 206 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE 206 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 3567899999986 477777777765 5799999999998888753
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=87.45 E-value=0.66 Score=47.42 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=35.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-+|+|. |..++.+|+.. +++|+++|.+++.++.+++
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~ 231 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA 231 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH
Confidence 5678999999875 77777788776 5799999999998888754
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=87.14 E-value=1.2 Score=44.41 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=45.0
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.++.+||=.|+| .|.+++.+|+.. +++|++++ +++-++.+++. +.. .++ .| .+.+ ...+|+|
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~l--------Ga~-~v~-~d-~~~v---~~g~Dvv 203 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAKR--------GVR-HLY-RE-PSQV---TQKYFAI 203 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHHH--------TEE-EEE-SS-GGGC---CSCEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHHc--------CCC-EEE-cC-HHHh---CCCccEE
Confidence 568899999996 477888888876 57999999 99888887652 111 122 24 2323 4679999
Q ss_pred EE
Q psy2395 475 VA 476 (570)
Q Consensus 475 v~ 476 (570)
+-
T Consensus 204 ~d 205 (315)
T 3goh_A 204 FD 205 (315)
T ss_dssp EC
T ss_pred EE
Confidence 86
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=86.87 E-value=0.35 Score=49.27 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=35.2
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
..++.+||-+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 164 ~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~ 209 (352)
T 3fpc_A 164 IKLGDTVCVIGIGPVGLMSVAGANHL--GAGRIFAVGSRKHCCDIALE 209 (352)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTT--TCSSEEEECCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH
Confidence 35678899999875 77778888765 45 89999999998888865
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=86.73 E-value=2.1 Score=43.74 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=34.6
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++.+||-+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~~ 235 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSA--GAKRIIAVDLNPDKFEKAKV 235 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHH
Confidence 5678999999874 77777888775 45 89999999999888763
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=86.51 E-value=2.2 Score=43.37 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=35.3
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..++.+||-+|+| .|.+++.+|+.. +++|+++|.+++.++.+++
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK 221 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence 3567899999986 377777778765 4789999999998888865
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=86.24 E-value=2.5 Score=43.16 Aligned_cols=43 Identities=28% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++.+||-+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~--Ga~~Vi~~~~~~~~~~~~~~ 233 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKE 233 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 5678999999874 67777777765 45 89999999999888864
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=86.17 E-value=4.3 Score=41.34 Aligned_cols=43 Identities=21% Similarity=0.103 Sum_probs=34.5
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++.+||-+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 234 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIE 234 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH
Confidence 5678999999874 77777888765 45 89999999998888763
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=85.64 E-value=3 Score=41.51 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=57.5
Q ss_pred EEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 400 KLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 400 ~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+||=.|+ |.|..++.+|+.. +++|++++.+++-++.+++. +....+-..+.........+.+|+|+-+
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~l--------Ga~~vi~~~~~~~~~~~~~~~~d~v~d~ 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKSL--------GANRILSRDEFAESRPLEKQLWAGAIDT 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH--------TCSEEEEGGGSSCCCSSCCCCEEEEEES
T ss_pred eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc--------CCCEEEecCCHHHHHhhcCCCccEEEEC
Confidence 4888886 5788888888876 57999999999988888652 1111121122111001112468888762
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
- | ...+..+.++|+++|.+++.
T Consensus 219 ~----------------------------g----~~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 219 V----------------------------G----DKVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp S----------------------------C----HHHHHHHHHTEEEEEEEEEC
T ss_pred C----------------------------C----cHHHHHHHHHHhcCCEEEEE
Confidence 1 1 12567778899999998763
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=85.57 E-value=1.8 Score=43.69 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=34.3
Q ss_pred CCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.+||-+|+|. |.+++.+|+...++++|+++|.+++.++.+++
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~ 214 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE 214 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH
Confidence 678999999974 67777777764113689999999999888864
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.50 E-value=1.9 Score=44.34 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=34.0
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCC-cEEEEEeCCHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNK-IEIIATDISKFALKIAK 439 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~-~~V~gvDis~~al~~A~ 439 (570)
.++.+||-+|+| .|.+++.+|+.. + .+|+++|.+++.++.++
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~ 237 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAE 237 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHc--CCceEEEEcCCHHHHHHHH
Confidence 467899999976 467777788765 5 59999999999888876
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=85.34 E-value=2.8 Score=42.73 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=34.1
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAK 439 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~ 439 (570)
.++.+||-+|+|. |.+++.+|+.. ++ +|+++|.+++.++.++
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~--Ga~~Vi~~~~~~~~~~~~~ 233 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAA--GAARIIGVDINKDKFAKAK 233 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH
Confidence 5678999999874 77777788765 45 8999999999888875
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.06 E-value=2.9 Score=42.14 Aligned_cols=43 Identities=14% Similarity=0.104 Sum_probs=33.4
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.+++
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~ 212 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS 212 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH
Confidence 56789999998 4677777777654 5799999999988776653
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=84.83 E-value=1.3 Score=44.68 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=35.3
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.|+ |.|..++.+++.. +++|++++.+++.++.+++
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~ 202 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKS 202 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence 46789999997 4677888888776 5799999999998887765
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=2.3 Score=40.68 Aligned_cols=78 Identities=14% Similarity=0.065 Sum_probs=52.6
Q ss_pred CCEEEEECCcccHHHHHHHHhc-C-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---------
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-K-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN--------- 466 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~--------- 466 (570)
+.+||=.| |+|.++..+++.+ . .+++|++++.++..++.+...+.. .+.++.++.+|+.+....
T Consensus 4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (276)
T 1wma_A 4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA----EGLSPRFHQLDIDDLQSIRALRDFLRK 78 (276)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH----TTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHh----cCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 45666555 6777887777543 2 257999999998877766666654 244688999998653110
Q ss_pred CCCceeEEEECCCC
Q psy2395 467 YKKLFNIIVANPPY 480 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy 480 (570)
..+.+|+||.|.-.
T Consensus 79 ~~g~id~li~~Ag~ 92 (276)
T 1wma_A 79 EYGGLDVLVNNAGI 92 (276)
T ss_dssp HHSSEEEEEECCCC
T ss_pred hcCCCCEEEECCcc
Confidence 01379999998654
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=84.51 E-value=3.2 Score=42.41 Aligned_cols=43 Identities=28% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++.+||-+|+|. |.+++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~a~~ 238 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKA 238 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHHH
Confidence 4678999999873 77777888775 45 89999999998888753
|
| >1yf3_A DNA adenine methylase; T4DAM, methyltransferase, transferase-DNA complex; HET: DNA SAH; 2.29A {Enterobacteria phage T4} SCOP: c.66.1.28 PDB: 1yfj_A* 1yfl_A* 1q0s_A* 1q0t_A* | Back alignment and structure |
|---|
Probab=84.48 E-value=4.2 Score=39.53 Aligned_cols=82 Identities=9% Similarity=0.070 Sum_probs=49.7
Q ss_pred CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 452 PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 452 ~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
++++.+.|+.+.+ ..+=|+|.++|||.+... .|. ..-+.+.+.++.+.+..+=+.||.+++.
T Consensus 149 ~v~i~~~Df~~~i---~~~~~fvY~DPPY~~~~~--------~Y~-------~~f~~~d~~~L~~~l~~l~~~g~~~~lS 210 (259)
T 1yf3_A 149 KIIFSSLHFKDVK---ILDGDFVYVDPPYLITVA--------DYN-------KFWSEDEEKDLLNLLDSLNDRGIKFGLS 210 (259)
T ss_dssp GEEEECCCGGGCC---CCTTEEEEECCCCTTSCC--------GGG-------GGCCHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred CCEEEcCCHHHHh---CCCCeEEEECCCCCCccc--------hhc-------cCCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 4899999998766 244589999999986421 121 1123345566666655443456776664
Q ss_pred EcCC----CHHHHHHHHHHCCCeeEE
Q psy2395 532 HGYN----QSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 532 ~~~~----~~~~l~~ll~~~Gf~~i~ 553 (570)
.... ..+.+.++.. ||....
T Consensus 211 ~~d~~~~~~~~~i~~~y~--~~~i~~ 234 (259)
T 1yf3_A 211 NVLEHHGKENTLLKEWSK--KYNVKH 234 (259)
T ss_dssp EESEETTEECHHHHHHHT--TSEEEE
T ss_pred eecCccccccHHHHHHHh--CCeEEE
Confidence 4322 2366777773 676543
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=84.43 E-value=5.3 Score=39.89 Aligned_cols=110 Identities=9% Similarity=0.078 Sum_probs=67.3
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCcee---
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFN--- 472 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD--- 472 (570)
...|++||||-=..+..+. .+.+.+++=|| .|..++..++.+...+.....+..++.+|+.+.+... ...||
T Consensus 103 ~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 103 IRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp CCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 4579999999776654443 13357999999 6999999998887532222446889999987622110 01122
Q ss_pred --EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 473 --IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 473 --~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++++- .++.|=| -+....+++.+...+.||++++++..
T Consensus 180 Pt~~i~E-------------gvl~Yl~----------~~~~~~ll~~l~~~~~~gs~l~~d~~ 219 (310)
T 2uyo_A 180 RTAWLAE-------------GLLMYLP----------ATAQDGLFTEIGGLSAVGSRIAVETS 219 (310)
T ss_dssp CEEEEEC-------------SCGGGSC----------HHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CEEEEEe-------------chHhhCC----------HHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 33331 1111111 12346778877777888888888764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=84.31 E-value=5.3 Score=40.16 Aligned_cols=45 Identities=31% Similarity=0.461 Sum_probs=33.2
Q ss_pred CCCCCEEEEECCc--ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTG--SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcG--tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..++.+||-.|+| .|..++.+++... +++|+++|.+++.++.+++
T Consensus 168 ~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~ 214 (347)
T 1jvb_A 168 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR 214 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH
Confidence 3567899999997 4555666665531 3689999999998887753
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=84.29 E-value=0.72 Score=46.27 Aligned_cols=43 Identities=23% Similarity=0.094 Sum_probs=34.2
Q ss_pred CCCCEEEEEC-C-cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMG-T-GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlG-c-GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.| + |.|..++.+++.. +++|+++|.+++.++.+++
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~ 183 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKA 183 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 4678999988 3 4677777777765 5799999999998888864
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.25 E-value=4.5 Score=39.20 Aligned_cols=122 Identities=19% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCC------------HHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDIS------------KFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis------------~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
.+.++|=.|+++ .++..+++.+ ..+++|+.+|.+ ...++.+...+.. .+.++.++.+|+.+.
T Consensus 9 ~gk~vlVTGas~-gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~ 83 (287)
T 3pxx_A 9 QDKVVLVTGGAR-GQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK----TGRKAYTAEVDVRDR 83 (287)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH----TTSCEEEEECCTTCH
T ss_pred CCCEEEEeCCCC-hHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHh----cCCceEEEEccCCCH
Confidence 356777777655 4555555432 235799999987 6666666655554 355799999998653
Q ss_pred ccc---------CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 464 LQN---------YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 464 l~~---------~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
... .-+++|++|.|.-+.... ....... ++. .+. -.+.....+++.+...++.+|.+++.
T Consensus 84 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~-~~~~~~~--~~~--~~~---~N~~g~~~l~~~~~~~~~~~g~iv~i 152 (287)
T 3pxx_A 84 AAVSRELANAVAEFGKLDVVVANAGICPLG-AHLPVQA--FAD--AFD---VDFVGVINTVHAALPYLTSGASIITT 152 (287)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCC-TTCCTHH--HHH--HHH---HHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCccc-CcCCHHH--HHH--Hhh---hhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence 210 014799999996654322 1000000 000 000 00112235666777788888887764
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=83.89 E-value=0.76 Score=46.80 Aligned_cols=42 Identities=26% Similarity=0.231 Sum_probs=32.9
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.++
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~ 212 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVL 212 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHH
Confidence 46789999997 4666677777665 579999999998887664
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=83.74 E-value=0.8 Score=46.44 Aligned_cols=42 Identities=33% Similarity=0.444 Sum_probs=33.2
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
++.+||-+|+| .|..++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~ 210 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKK 210 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 57789999986 366777777765 46 89999999998888763
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=83.47 E-value=4.5 Score=34.85 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=43.1
Q ss_pred CEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc--cccC-CCceeEE
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN--LQNY-KKLFNII 474 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~--l~~~-~~~fD~I 474 (570)
.+|+=+||| .++..+++.. ..+..|+++|.+++.++.++. . .+.++.+|..+. +... -..+|+|
T Consensus 8 ~~viIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~---~-------g~~~i~gd~~~~~~l~~a~i~~ad~v 75 (140)
T 3fwz_A 8 NHALLVGYG--RVGSLLGEKLLASDIPLVVIETSRTRVDELRE---R-------GVRAVLGNAANEEIMQLAHLECAKWL 75 (140)
T ss_dssp SCEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---T-------TCEEEESCTTSHHHHHHTTGGGCSEE
T ss_pred CCEEEECcC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH---c-------CCCEEECCCCCHHHHHhcCcccCCEE
Confidence 468888875 4555554332 125789999999998877653 1 256788998653 2111 1468998
Q ss_pred EEC
Q psy2395 475 VAN 477 (570)
Q Consensus 475 v~N 477 (570)
++-
T Consensus 76 i~~ 78 (140)
T 3fwz_A 76 ILT 78 (140)
T ss_dssp EEC
T ss_pred EEE
Confidence 874
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.47 E-value=1 Score=45.60 Aligned_cols=43 Identities=33% Similarity=0.245 Sum_probs=35.4
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.+++
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~ 209 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA 209 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh
Confidence 46789999998 5788888888765 5799999999998888763
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=83.41 E-value=4.4 Score=41.41 Aligned_cols=42 Identities=26% Similarity=0.227 Sum_probs=34.2
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKI-EIIATDISKFALKIAK 439 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~-~V~gvDis~~al~~A~ 439 (570)
.++.+||=+|+| .|.+++.+|+.. ++ +|+++|.+++.++.|+
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~--Ga~~Vi~~~~~~~~~~~a~ 235 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTA--GASRIIGIDIDSKKYETAK 235 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHH--TCSCEEEECSCTTHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH
Confidence 567889999987 477788888776 45 8999999999988775
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.24 E-value=7.3 Score=39.93 Aligned_cols=126 Identities=15% Similarity=0.184 Sum_probs=78.0
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
-++|++.+... ..+.+||.++.+.|.++..++.. .++.+.=|-.+...++.|+..|+.. ...+++... .+
T Consensus 26 d~~ll~~~~~~--~~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~-~~~~~~~~~--~~ 95 (375)
T 4dcm_A 26 DEYLLQQLDDT--EIRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGID-ESSVKFLDS--TA 95 (375)
T ss_dssp HHHHHHTTTTC--CCCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCC-GGGSEEEET--TS
T ss_pred HHHHHHhhhhc--cCCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCC-ccceEeccc--cc
Confidence 34555554322 24468999999999999998743 2455543666777888999886421 112555432 12
Q ss_pred ccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHH
Q psy2395 463 NLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVR 541 (570)
Q Consensus 463 ~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~ 541 (570)
.....||+|+.-.|- .+......+..+...|.+|+.+++.-.. .-...+.
T Consensus 96 ---~~~~~~~~v~~~lpk--------------------------~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~ 146 (375)
T 4dcm_A 96 ---DYPQQPGVVLIKVPK--------------------------TLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTL 146 (375)
T ss_dssp ---CCCSSCSEEEEECCS--------------------------CHHHHHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHH
T ss_pred ---ccccCCCEEEEEcCC--------------------------CHHHHHHHHHHHHhhCCCCCEEEEEecccchHHHHH
Confidence 223679999985441 2345677888889999999998653322 1224455
Q ss_pred HHHHHC
Q psy2395 542 KLLFKY 547 (570)
Q Consensus 542 ~ll~~~ 547 (570)
+.|.+.
T Consensus 147 ~~l~~~ 152 (375)
T 4dcm_A 147 ELFEKV 152 (375)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 556554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=82.96 E-value=8.3 Score=32.45 Aligned_cols=71 Identities=17% Similarity=0.147 Sum_probs=42.2
Q ss_pred CCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc--cc-cCCCceeE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN--LQ-NYKKLFNI 473 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~--l~-~~~~~fD~ 473 (570)
+.+|+=+|+ |.++..+++.+ ..+.+|+.+|.+++.++.++.. . .+.++.+|..+. +. ..-..+|+
T Consensus 4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-------~--~~~~~~~d~~~~~~l~~~~~~~~d~ 72 (140)
T 1lss_A 4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-------I--DALVINGDCTKIKTLEDAGIEDADM 72 (140)
T ss_dssp -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------C--SSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-------c--CcEEEEcCCCCHHHHHHcCcccCCE
Confidence 357777766 66666665432 1247899999999876554321 1 245677776432 11 11246899
Q ss_pred EEECCC
Q psy2395 474 IVANPP 479 (570)
Q Consensus 474 Iv~NPP 479 (570)
|+...|
T Consensus 73 vi~~~~ 78 (140)
T 1lss_A 73 YIAVTG 78 (140)
T ss_dssp EEECCS
T ss_pred EEEeeC
Confidence 998644
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=82.34 E-value=4.9 Score=41.48 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=35.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcC------CCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSK------NKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~------~~~~V~gvDis~~al~~A~~n~~ 443 (570)
.+..|+|+|.|+|.++.-+.+... ...+++.||+||...+.-++.+.
T Consensus 80 ~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 132 (387)
T 1zkd_A 80 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 132 (387)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred CCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence 345799999999999887765321 24589999999988876655543
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=82.34 E-value=3 Score=43.66 Aligned_cols=71 Identities=15% Similarity=0.189 Sum_probs=45.4
Q ss_pred CCccccchhH-----HHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhc----CCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 374 SDVLIPRPET-----ELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYS----KNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 374 ~~~~~pr~~t-----~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~----~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
.+-|+..|+. +.+..++..... ..+..|+|+|.|+|.++.-+.+.. +...+++.||+||...+.-++.+.
T Consensus 108 ~GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~ 187 (432)
T 4f3n_A 108 GSDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG 187 (432)
T ss_dssp --CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred CCCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence 4566666543 333344333221 124799999999999987776433 112489999999998887777765
Q ss_pred h
Q psy2395 444 K 444 (570)
Q Consensus 444 ~ 444 (570)
.
T Consensus 188 ~ 188 (432)
T 4f3n_A 188 A 188 (432)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A | Back alignment and structure |
|---|
Probab=82.33 E-value=21 Score=31.06 Aligned_cols=93 Identities=8% Similarity=0.025 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH------HHHHHhhCChhHHHH
Q psy2395 4 LMLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDI------ITAKEMLNDLEMRNF 77 (570)
Q Consensus 4 ~~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~------~~~~~l~~D~~~~~~ 77 (570)
.+..+++.++.-.++|.+....-.+-+.+++...+.+++..+..-++..+.|....+=. .||....+..+++.+
T Consensus 25 ~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~ 104 (141)
T 3okq_A 25 TLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTL 104 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888887788899999999999999988888888776554322 233333345666777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2395 78 ALDEINLAKKRIFDIELEI 96 (570)
Q Consensus 78 a~~e~~~~~~~~~~~~~~l 96 (570)
.++-+.+|...++++.+-+
T Consensus 105 QedL~~DL~eDL~ka~etf 123 (141)
T 3okq_A 105 QEELILDLKEDLGKALETF 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666544
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.16 E-value=2.1 Score=44.35 Aligned_cols=43 Identities=23% Similarity=0.326 Sum_probs=34.7
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++.+||=+|+|. |.+++.+|+.. ++ +|+++|.++.-++.+++
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~--Ga~~Vi~~~~~~~~~~~~~~ 256 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHA--GASKVILSEPSEVRRNLAKE 256 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 4678999999864 67777788765 45 99999999999988864
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=81.93 E-value=1.4 Score=44.79 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=32.1
Q ss_pred CCC--CEEEEECC--cccHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 396 EKK--IKLLEMGT--GSGAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~--~~VLDlGc--GtG~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
.++ .+||-.|+ |.|..++.+++.. ++ +|+++|.+++.++.+++
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~ 204 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTS 204 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHH
Confidence 456 89999997 4556666666654 56 99999999988777654
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.89 E-value=3.5 Score=39.49 Aligned_cols=80 Identities=14% Similarity=0.056 Sum_probs=52.4
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------- 465 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------- 465 (570)
++.+||=.|++ +|.++..+++.+ ..+++|+.++.+....+.++..... . ..+.++.+|+.+...
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~-~~~~~~~~Dv~~~~~v~~~~~~~~ 87 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAE----F-GSELVFPCDVADDAQIDALFASLK 87 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH----T-TCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHH----c-CCcEEEECCCCCHHHHHHHHHHHH
Confidence 56788888874 366666666543 2257999999987666655555443 1 237889999865311
Q ss_pred cCCCceeEEEECCCCC
Q psy2395 466 NYKKLFNIIVANPPYI 481 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~ 481 (570)
...++.|++|.|.-+.
T Consensus 88 ~~~g~id~lv~nAg~~ 103 (271)
T 3ek2_A 88 THWDSLDGLVHSIGFA 103 (271)
T ss_dssp HHCSCEEEEEECCCCC
T ss_pred HHcCCCCEEEECCccC
Confidence 1115799999997654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=81.70 E-value=2.6 Score=42.60 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=33.2
Q ss_pred CCCEEEEEC-Cc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMG-TG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlG-cG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
++.+||=.| +| .|..++.+++.. +++|+++|.+++.++.+++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~ 193 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK 193 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence 577899884 44 577777778765 5799999999998888875
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=81.27 E-value=1.6 Score=44.58 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=35.0
Q ss_pred CCCCEEEEEC--CcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMG--TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlG--cGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.| .|.|..++.+++.. +++|+++|.+++.++.+++
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~ 206 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS 206 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH
Confidence 5678999999 45788888888776 5799999999988887764
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=81.22 E-value=2.6 Score=42.97 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=31.6
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
++.+||-+|+| .|..++.+|+.. +++|+++|.+++.++.++
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~ 228 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEAL 228 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHH
Confidence 67899999976 356666677665 579999999998877665
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=81.17 E-value=1.4 Score=44.92 Aligned_cols=41 Identities=17% Similarity=0.099 Sum_probs=32.2
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
++.+||-+|+| .|.+++.+|+.. +++|+++|.+++.++.++
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~ 221 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEAL 221 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHH
Confidence 67899999976 466677777765 479999999998777765
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.12 E-value=1.3 Score=44.29 Aligned_cols=43 Identities=23% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.+++
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~ 183 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK 183 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence 46789999983 4566666666655 4799999999988887765
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=81.01 E-value=11 Score=37.93 Aligned_cols=64 Identities=9% Similarity=0.174 Sum_probs=48.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc-----c-------------CCCCEEEEEc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT-----K-------------YNIPIKFIKS 458 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~-----~-------------~~~~v~~~~~ 458 (570)
+...|+.+|||....+..+....+ +.+++-||. |+.++.-++.+...+. + ...+..++.+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 456899999999999999886544 578888888 8888887777665310 0 1246889999
Q ss_pred cccc
Q psy2395 459 NWYN 462 (570)
Q Consensus 459 D~~~ 462 (570)
|+.+
T Consensus 175 DL~d 178 (334)
T 1rjd_A 175 DLND 178 (334)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9876
|
| >2dpm_A M.dpnii 1, protein (adenine-specific methyltransferase dpnii 1); DNA adenine methyltransferase, methylase; HET: SAM; 1.80A {Streptococcus pneumoniae} SCOP: c.66.1.28 | Back alignment and structure |
|---|
Probab=81.00 E-value=13 Score=36.47 Aligned_cols=101 Identities=10% Similarity=0.148 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCEEEE--EcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChH
Q psy2395 432 KFALKIAKKNAKKKLTKYNIPIKFI--KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLS 509 (570)
Q Consensus 432 ~~al~~A~~n~~~~~~~~~~~v~~~--~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~ 509 (570)
++.+..+.+.++. +++. ++|+.+.+... .+=|+|.+||||.+....... ..|. ...-+.+
T Consensus 156 ~~~l~~~~~~l~~--------v~i~~~~~Df~~~i~~~-~~~~fvY~DPPY~~~~~~~~f---~~Y~------~~~f~~~ 217 (284)
T 2dpm_A 156 EELISAISVYINN--------NQLEIKVGDFEKAIVDV-RTGDFVYFDPPYIPLSETSAF---TSYT------HEGFSFA 217 (284)
T ss_dssp HHHHHHHHHHHHH--------SEEEEEESCGGGGGTTC-CTTCEEEECCCCCCC-----C---CCCC------CSSCCHH
T ss_pred HHHHHHHHHHhCC--------CEEEEeCCCHHHHHHhc-CCCCEEEeCCCcccccCCCCc---cccc------cCCCCHH
Confidence 4455555554442 5666 99998876543 445899999999873211000 0010 0112345
Q ss_pred HHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeEEE
Q psy2395 510 SIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 510 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i~~ 554 (570)
.+.++.+.+..+=+.||.+++.... .+.+.++.. ||....+
T Consensus 218 dh~~L~~~l~~l~~~g~~~~lS~~d--~~~i~~ly~--~~~i~~~ 258 (284)
T 2dpm_A 218 DQVRLRDAFKRLSDTGAYVMLSNSS--SALVEELYK--DFNIHYV 258 (284)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEEES--CHHHHHHTT--TSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCC--CHHHHHHHc--CCeEEEE
Confidence 5666666655443457766655433 366677664 6765443
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=80.55 E-value=0.57 Score=47.46 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=32.8
Q ss_pred CCCEEEEECCcc-cHHHHHHHHhcCCCc-EEEEEeCCHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGS-GAIAIAIAIYSKNKI-EIIATDISKFALKIAKK 440 (570)
Q Consensus 397 ~~~~VLDlGcGt-G~i~l~la~~~~~~~-~V~gvDis~~al~~A~~ 440 (570)
++.+||-+|+|. |..++.+|+.. ++ +|+++|.+++.++.+++
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~ 207 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARP 207 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH
Confidence 677899999863 66777777765 46 89999999988777654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=80.52 E-value=0.9 Score=45.71 Aligned_cols=43 Identities=28% Similarity=0.244 Sum_probs=33.9
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.+++
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~ 191 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE 191 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence 46789999984 4677777777765 5799999999998887754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=80.40 E-value=1.5 Score=44.54 Aligned_cols=42 Identities=21% Similarity=0.165 Sum_probs=32.4
Q ss_pred CCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH
Q psy2395 396 EKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAK 439 (570)
Q Consensus 396 ~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~ 439 (570)
.++.+||-.|+ |.|..++.+++.. +++|+++|.+++.++.++
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~ 204 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAE 204 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH
Confidence 46789999984 4666666677664 579999999999888774
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=80.08 E-value=2 Score=43.63 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=29.9
Q ss_pred CEEEEECCc-ccHHH-HHHH-HhcCCCcE-EEEEeCCHH---HHHHHH
Q psy2395 399 IKLLEMGTG-SGAIA-IAIA-IYSKNKIE-IIATDISKF---ALKIAK 439 (570)
Q Consensus 399 ~~VLDlGcG-tG~i~-l~la-~~~~~~~~-V~gvDis~~---al~~A~ 439 (570)
.+||-+|+| .|.++ +.+| +.. +++ |+++|.+++ .++.++
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~ 219 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIE 219 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHH
Confidence 899999985 36666 7777 654 455 999999988 777775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 570 | ||||
| d1gqea_ | 362 | e.38.1.1 (A:) Polypeptide chain release factor 2 ( | 5e-64 | |
| d2b3tb1 | 344 | e.38.1.1 (B:7-354) Peptide chain release factor 1, | 2e-57 | |
| d1rq0a_ | 333 | e.38.1.1 (A:) Peptide chain release factor 1, RF1 | 4e-43 | |
| d2b3ta1 | 274 | c.66.1.30 (A:2-275) N5-glutamine methyltransferase | 2e-34 | |
| d1nv8a_ | 271 | c.66.1.30 (A:) N5-glutamine methyltransferase, Hem | 1e-28 | |
| d2h00a1 | 250 | c.66.1.54 (A:5-254) Methyltransferase 10 domain co | 2e-25 | |
| d1j26a_ | 112 | d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [ | 4e-19 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 5e-05 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 6e-05 | |
| d1dusa_ | 194 | c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeo | 1e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 4e-04 | |
| d2ih2a1 | 223 | c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina | 0.001 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.002 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 0.002 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 0.003 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 0.004 |
| >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} Length = 362 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Polypeptide chain release factor 2 (RF2) species: Escherichia coli [TaxId: 562]
Score = 211 bits (539), Expect = 5e-64
Identities = 108/295 (36%), Positives = 169/295 (57%), Gaps = 3/295 (1%)
Query: 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKE 67
+ +RL+E++ L Q +V N + +E S L +V+ + K+ ED+ E
Sbjct: 23 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLE 82
Query: 68 MLNDLEMRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALF 127
+ + + + + + + + + D + +++I+AG+GG E+ +
Sbjct: 83 LAVEADDEETFNEAVAELDALEEKLAQLEFRRM-FSGEYDSADCYLDIQAGSGGTEAQDW 141
Query: 128 VNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRV 187
+ L RMY+R++E +K EII S E+ G K + +I G Y L+ E+GVHR+ R
Sbjct: 142 ASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRK 201
Query: 188 PKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRIT 247
++ GR HTS + V PE D+ DI INPADLRID YRASGAGGQH+N+T+SAVRIT
Sbjct: 202 SPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRIT 261
Query: 248 HIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQS--NTAKMRRLLIGS 300
HIPTGIV QCQNDRSQHKNK A+K + A++ + +++++ + + + IG
Sbjct: 262 HIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGW 316
|
| >d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} Length = 344 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Peptide chain release factor 1, RF1 species: Escherichia coli [TaxId: 562]
Score = 194 bits (493), Expect = 2e-57
Identities = 156/287 (54%), Positives = 213/287 (74%)
Query: 14 KRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLE 73
+R +E+ LL + + + + RE++ L + + +++++ EDI TA+ ML+D E
Sbjct: 4 ERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPE 63
Query: 74 MRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLR 133
MR A DE+ AK++ +E +++ L+LPKD +D+RN F+E+RAGTGGDE+ALF DL R
Sbjct: 64 MREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFR 123
Query: 134 MYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQ 193
MY R++E W+ EI+S S E GGYKEIIA+I G VY +LKFESG HRVQRVP TE+Q
Sbjct: 124 MYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQ 183
Query: 194 GRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGI 253
GRIHTSACTVAV+PE + E ++NPADLRIDT+R+SGAGGQH+N TDSA+RITH+PTGI
Sbjct: 184 GRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGI 243
Query: 254 VVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
VV+CQ++RSQHKNKA AL +L ARI +++ ++Q A RR L+GS
Sbjct: 244 VVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGS 290
|
| >d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} Length = 333 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Peptide chain release factor 1, RF1 species: Thermotoga maritima [TaxId: 2336]
Score = 154 bits (391), Expect = 4e-43
Identities = 116/287 (40%), Positives = 175/287 (60%), Gaps = 13/287 (4%)
Query: 14 KRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLE 73
++ KE++ LL + ++ + E++ + I + N K+ E I +E + E
Sbjct: 3 EKKKEIEKLLARPDLTP--EQMKNYGMEYAKIEEIENITNRIKETQEFIELLREE-GENE 59
Query: 74 MRNFALDEINLAKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLR 133
+ EI +K + + ++L+ +EIR GTGG+E+ALF DL R
Sbjct: 60 L------EIEKYEKELDQLY---QELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFR 110
Query: 134 MYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVYSKLKFESGVHRVQRVPKTETQ 193
MY R++ER W E+ +++GG +E++ + G N Y LK+ESGVHRVQRVP TE+
Sbjct: 111 MYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESG 170
Query: 194 GRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTGI 253
GRIHTS TVA + E +DI I P DL+I+T+RASG GGQ++NKT+SAVRITH+PTGI
Sbjct: 171 GRIHTSTATVA-VLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGI 229
Query: 254 VVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGS 300
VV CQN+RSQ++NK AL+IL AR+ + +++ ++ R+ IG+
Sbjct: 230 VVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGT 276
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Score = 129 bits (324), Expect = 2e-34
Identities = 97/258 (37%), Positives = 157/258 (60%), Gaps = 6/258 (2%)
Query: 311 ETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVL 370
+ ILL++VT ++ E +L ++ L+ L+ RR GEPIA++ G +EF+ L L
Sbjct: 22 DAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPL 81
Query: 371 NITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDI 430
++ LIPRP+TE LV+ + + E+ ++L++GTG+GAIA+A+A + EIIA D
Sbjct: 82 FVSPATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERPD-CEIIAVDR 140
Query: 431 SKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNK 490
A+ +A++NA+ K I ++S+W++ L + F +IV+NPPYI + D HL +
Sbjct: 141 MPDAVSLAQRNAQHLAIK---NIHILQSDWFSALAGQQ--FAMIVSNPPYIDEQDPHLQQ 195
Query: 491 GDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFS 550
GD+RFEP+ AL +G++ I I++ + LV G LL+EHG+ Q VR+ G+
Sbjct: 196 GDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYH 255
Query: 551 DIKSWRDLSGIERVTQGK 568
D+++ RD ERVT G+
Sbjct: 256 DVETCRDYGDNERVTLGR 273
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} Length = 271 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Score = 113 bits (282), Expect = 1e-28
Identities = 66/271 (24%), Positives = 126/271 (46%), Gaps = 14/271 (5%)
Query: 295 RLLIGSVQKKSPLNIFETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGE 354
R G ++ + ++ E +++ V + +L + + + E + +L+++R G
Sbjct: 8 RDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLFLKD-LGVSPTEEKRILELVEKRASGY 66
Query: 355 PIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIA 414
P+ YI+G+KEF GL + V +PRPETE LV+L ++ + IK + I
Sbjct: 67 PLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIRKYGIKTVADIGTGSGA-IG 125
Query: 415 IAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474
+++ + + ATD+S A++IA+KNA++ + K + + +I
Sbjct: 126 VSVAKFSDAIVFATDVSSKAVEIARKNAERH--GVSDRFFVRKGEFLEPFKEKFASIEMI 183
Query: 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534
++NPPY+ D+ FEP AL +GL +E +Y ++L+E G
Sbjct: 184 LSNPPYVK--SSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLMEIGE 238
Query: 535 NQSNLVRKLLFKYGFSDIKSWRDLSGIERVT 565
+Q ++K++ F +D +G R
Sbjct: 239 DQVEELKKIVSDTVF-----LKDSAGKYRFL 264
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (257), Expect = 2e-25
Identities = 35/221 (15%), Positives = 72/221 (32%), Gaps = 26/221 (11%)
Query: 363 KEFYGLVLNITSDVLIPRPETELLVDLIV-------KKTFEKKIKLLEMGTGSGAIAIAI 415
+E +GL ++I + LIP L V + +++GTG+ I +
Sbjct: 20 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 79
Query: 416 AIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL-----QNYKKL 470
+AT++ AKKN ++ + IK +K L + + +
Sbjct: 80 GATLNGWY-FLATEVDDMCFNYAKKNVEQ--NNLSDLIKVVKVPQKTLLMDALKEESEII 136
Query: 471 FNIIVANPPYIPKGDIHLN----------KGDLRFEPINALTDYSNGLSSIKEIVKNASK 520
++ + NPP+ + I + L +K I+ ++ +
Sbjct: 137 YDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQ 196
Query: 521 YLVKNGLLLIEHGYNQS-NLVRKLLFKYGFSDIKSWRDLSG 560
+ G S +++ L G + G
Sbjct: 197 LKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQG 237
|
| >d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 112 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: Peptidyl-tRNA hydrolase domain-like family: Peptidyl-tRNA hydrolase domain domain: Ict1 protein species: Mouse (Mus musculus) [TaxId: 10090]
Score = 80.8 bits (199), Expect = 4e-19
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 25/99 (25%)
Query: 207 PEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHI----------------- 249
E + I L I R+SG GGQ++NK +S +
Sbjct: 7 GEHAKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIAL 66
Query: 250 --------PTGIVVQCQNDRSQHKNKAFALKILLARIKD 280
+V+ ++ R Q +N A L+ + I +
Sbjct: 67 THKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAE 105
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (101), Expect = 5e-05
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 359 IIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKT---FEKKI-------------KLL 402
I+GK L + ++ RP E V L+ + T F K I +L
Sbjct: 44 IVGKFPGQILRSSFGKQYMLRRPALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVL 103
Query: 403 EMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444
E G+GSG +++ ++ ++ +I+ ++ K +AKKN K
Sbjct: 104 EAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKH 145
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 42.1 bits (98), Expect = 6e-05
Identities = 16/99 (16%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 378 IPRPETELLVDLIVKKTFEKK-IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436
+P P + LI+ K +++G G+G + + +A + + A D + A+
Sbjct: 13 VPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR---VYAIDRNPEAIS 69
Query: 437 IAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475
+ N ++ N + ++ + L + +V
Sbjct: 70 TTEMNLQRHGLGDN--VTLMEGDAPEALCKIPDIDIAVV 106
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 41.2 bits (95), Expect = 1e-04
Identities = 41/216 (18%), Positives = 80/216 (37%), Gaps = 42/216 (19%)
Query: 345 KLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEM 404
K+++ + G+ + + F ++ T++LV+ +V K +L++
Sbjct: 12 KIVEDILRGKKLKFKTDSGVFSYGKVD---------KGTKILVENVVVD---KDDDILDL 59
Query: 405 GTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464
G G G I IA+ + DI++ A+K+AK+N K N I+ + S+ Y
Sbjct: 60 GCGYGVIGIAL---ADEVKSTTMADINRRAIKLAKENIKLN-NLDNYDIRVVHSDLYE-- 113
Query: 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524
+ +N I+ NPP G + I++ + L
Sbjct: 114 NVKDRKYNKIITNPPIR------------------------AGKEVLHRIIEEGKELLKD 149
Query: 525 NGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWRDLSG 560
NG + + Q K F ++++ G
Sbjct: 150 NGEIWVVIQTKQGAKSLAKYMKDVFGNVETVTIKGG 185
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 40.0 bits (92), Expect = 4e-04
Identities = 27/154 (17%), Positives = 60/154 (38%), Gaps = 7/154 (4%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
++L++ TG G +A A A +++A D+++ LK+A+ + + ++
Sbjct: 18 EVLDVATGGGHVANAFA---PFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 74
Query: 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519
+ + + I A+ P + L+ L D S + ++ N
Sbjct: 75 MPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN-- 132
Query: 520 KYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIK 553
Y+ K + +S+ K+L + GF +
Sbjct: 133 -YVEKERDYSHHRAWKKSDW-LKMLEEAGFELEE 164
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Score = 38.1 bits (87), Expect = 0.001
Identities = 20/177 (11%), Positives = 41/177 (23%), Gaps = 8/177 (4%)
Query: 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFAL 435
V P + +V L + ++LE G A + +I AL
Sbjct: 1 VETPPEVVDFMVSLAEAP---RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKAL 57
Query: 436 KIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRF 495
+ + Y + K +
Sbjct: 58 DLPPWAEGILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTW 116
Query: 496 EPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552
+ L + ++V L++E R+ L + G + +
Sbjct: 117 KGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALL----REFLAREGKTSV 169
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.4 bits (88), Expect = 0.002
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 18/154 (11%)
Query: 380 RPETELLVDLIVKKTFEKKIK-LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438
R T ++ + +L++ G+G +I + + + + D S LK A
Sbjct: 38 RSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV---EEGFSVTSVDASDKMLKYA 94
Query: 439 KKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPI 498
K + + I+ + L + P D +
Sbjct: 95 LKERWNRRKEPAFDKWVIEEANWLTLDK----------DVPAGDGFDAVI----CLGNSF 140
Query: 499 NALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532
L D S + +KN + + GLL+I+H
Sbjct: 141 AHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH 174
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.8 bits (87), Expect = 0.002
Identities = 21/157 (13%), Positives = 49/157 (31%), Gaps = 23/157 (14%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
+++ GTG+G +A + + DI A++ AK+N + F+ ++
Sbjct: 51 SVIDAGTGNGILACGSYLLGAESVTAF--DIDPDAIETAKRNCG--------GVNFMVAD 100
Query: 460 WYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519
++ + NPP+ + D F + I I +
Sbjct: 101 VS----EISGKYDTWIMNPPF----GSVVKHSDRAF-----IDKAFETSMWIYSIGNAKA 147
Query: 520 KYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDIKSWR 556
+ ++ + + + + Y R
Sbjct: 148 RDFLRREFSARGDVFREEKVYITVPRIYRHHSYDRAR 184
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 37.3 bits (86), Expect = 0.003
Identities = 17/84 (20%), Positives = 31/84 (36%)
Query: 400 KLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN 459
+LE+G GSG ++ I K + + + LK A N + N+
Sbjct: 88 DILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA 147
Query: 460 WYNNLQNYKKLFNIIVANPPYIPK 483
+ + Q Y + I ++ K
Sbjct: 148 DFISDQMYDAVIADIPDPWNHVQK 171
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.9 bits (85), Expect = 0.004
Identities = 19/101 (18%), Positives = 41/101 (40%), Gaps = 20/101 (19%)
Query: 359 IIGKKEFYGLVLNITSD--VLIPRPETELLVDLIVKKT---FEKKI-------------K 400
+IG + G V+ ++ L+ RP V + + + K +
Sbjct: 42 VIGLE--QGSVVKSSNGALFLVLRPLLVDYVMSMPRGPQVIYPKDAAQIVHEGDIFPGAR 99
Query: 401 LLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441
+LE G GSGA+ +++ ++I+ + + A++N
Sbjct: 100 VLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRN 140
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 570 | |||
| d1gqea_ | 362 | Polypeptide chain release factor 2 (RF2) {Escheric | 100.0 | |
| d2b3tb1 | 344 | Peptide chain release factor 1, RF1 {Escherichia c | 100.0 | |
| d1rq0a_ | 333 | Peptide chain release factor 1, RF1 {Thermotoga ma | 100.0 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 100.0 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 100.0 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.94 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.81 | |
| d1j26a_ | 112 | Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} | 99.79 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.75 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.68 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.64 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.64 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.64 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.63 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.62 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.61 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.61 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.6 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.6 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.59 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.58 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.57 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.57 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.56 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.56 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.56 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.56 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.56 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.56 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.55 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.55 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 99.55 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.54 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.54 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.52 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.52 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.51 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.5 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.5 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.5 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.48 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.48 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.47 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.46 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.46 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.45 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.45 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.44 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 99.44 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.44 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.44 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.44 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.42 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.42 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.41 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.41 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.4 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.39 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.39 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.39 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.39 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.33 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.33 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.31 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.29 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 99.27 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.23 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.21 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.2 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.2 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.19 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.16 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.16 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 99.14 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.13 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.07 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.05 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 99.02 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.96 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.96 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.9 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.88 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.88 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.86 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.83 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.81 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.77 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.76 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.74 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.73 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.71 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.68 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.61 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.58 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.57 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 98.54 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.51 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.5 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.49 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.46 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.4 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.25 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 98.19 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.9 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.47 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.24 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.12 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 97.07 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 96.93 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.83 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.81 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.79 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.68 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.46 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.26 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.2 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.87 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 94.48 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.41 | |
| d2dpma_ | 275 | DNA methylase DpnM {Streptococcus pneumoniae [TaxI | 94.37 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.17 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.1 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.45 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 93.45 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.81 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 92.13 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.07 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 92.02 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.93 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.63 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 90.77 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.54 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.37 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 89.96 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.49 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.89 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 87.57 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.42 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 87.15 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 87.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 86.93 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 86.64 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 86.15 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.51 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 84.94 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.5 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 84.02 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 82.77 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 82.63 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 82.06 | |
| d1dcfa_ | 134 | Receiver domain of the ethylene receptor {Thale cr | 81.02 | |
| d1u5pa2 | 101 | Spectrin alpha chain {Chicken (Gallus gallus) [Tax | 80.54 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 80.5 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 80.38 |
| >d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Polypeptide chain release factor 2 (RF2) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.2e-93 Score=732.21 Aligned_cols=302 Identities=38% Similarity=0.534 Sum_probs=285.4
Q ss_pred HHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHH
Q psy2395 8 KLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEML---NDLEMRNFALDEINL 84 (570)
Q Consensus 8 ~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~---~D~~~~~~a~~e~~~ 84 (570)
+++++++|+++|+++|++|+||+|+++|++++||++.|+++|+.|++|.+.++|++++.+|+ +|++|.+++..+++.
T Consensus 23 Dld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~ee~deel~~e~~~~l~~ 102 (362)
T d1gqea_ 23 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAELDA 102 (362)
T ss_dssp THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCChhhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999998 478888999999988
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEE
Q psy2395 85 AKKRIFDIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIA 164 (570)
Q Consensus 85 ~~~~~~~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 164 (570)
+.+.+++++ ..++|++|+|.++|+|||+||+||+||++||+||+|||++||+++||++++++.++++.+|+|+|++
T Consensus 103 l~~~l~~le----~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~eiid~~~~e~gG~K~v~~ 178 (362)
T d1gqea_ 103 LEEKLAQLE----FRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTI 178 (362)
T ss_dssp HHHHHHHHG----GGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEEE
T ss_pred HhhhhhHHH----HhhcccCcccccceEEEEEecCchhhHHHHHHHHHHHHHHHHHHcCCeEEEeccccCCccceeEEEE
Confidence 888887666 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceE
Q psy2395 165 RIIGLNVYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAV 244 (570)
Q Consensus 165 ~~~g~~~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v 244 (570)
.|+|++||++||+|+|||||||||||+++||+|||||+|+|+|+.++..++.|+++||+|+|||||||||||||||+|||
T Consensus 179 ~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ~vN~t~sav 258 (362)
T d1gqea_ 179 KISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAV 258 (362)
T ss_dssp EEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCEE
T ss_pred EEECccHHHHHHHhcCceeEEEecccCCCceEEEEEEEEEEeecCCCccceecChHHeEEEEeecCCCCccchhhhhcee
Confidence 99999999999999999999999999999999999999999999866555999999999999999999999999999999
Q ss_pred EEEecCCceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 245 RITHIPTGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 245 ~~~h~p~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
||||+||||+|.||++|||++||+.||++|++||++.+.+++.++.+..+..+... .||++||||||++
T Consensus 259 ri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~iRtY~~~~ 327 (362)
T d1gqea_ 259 RITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDI-GWGSQIRSYVLDD 327 (362)
T ss_dssp EEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCC-CSCSEEEEEEGGG
T ss_pred EEEecCchhHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-cCcCCccCccCCC
Confidence 99999999999999999999999999999999999999988877666555554444 5999999999987
|
| >d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Peptide chain release factor 1, RF1 species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.6e-93 Score=730.57 Aligned_cols=304 Identities=51% Similarity=0.801 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHH
Q psy2395 11 KFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEINLAKKRIF 90 (570)
Q Consensus 11 ~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~~~~~~a~~e~~~~~~~~~ 90 (570)
++++||++|+++|+||+||+|+++|++++||++.|+++|+.|++|....++++++.+|++|+||.+++.+|+..+..+++
T Consensus 1 Ai~eR~eELe~~LsdPd~w~D~~kaqkLsKE~s~L~~iV~~~~~l~~~~~dleel~eL~eD~E~~ela~eEl~el~~~l~ 80 (344)
T d2b3tb1 1 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKSE 80 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred ChHHHHHHHHHHhhCCcchhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHhhhhhhhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccc
Q psy2395 91 DIELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLN 170 (570)
Q Consensus 91 ~~~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~ 170 (570)
+++++++..|+|++++|.++|+|||+||+||+||++||+||++||++||+++||++++++.++++.+|+|+|++.|+|++
T Consensus 81 ~le~~l~~~ll~~~~~D~~~aileI~aGaGG~EA~dwA~~L~rMY~r~ae~~g~k~evl~~~~ge~~Gik~~~~~i~G~~ 160 (344)
T d2b3tb1 81 QLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDG 160 (344)
T ss_dssp ----CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEECSSS
T ss_pred HHHHHHHHHhcccccccccceEEEEecccchHHHHHHHHHHHHHHHHHHHHcCCcceecccccccCCceeEEEEEEEcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecC
Q psy2395 171 VYSKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIP 250 (570)
Q Consensus 171 ~~~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p 250 (570)
||++|++|+|||||||||||+++||+||||++|.|+|.+++...+.|+++||+|+|+|||||||||||||+|||||||+|
T Consensus 161 ay~~lk~E~GvHRvqRip~~~~~~r~hts~~~v~v~p~~~~~~~~~i~~~dl~i~~~rssg~GGQ~vnkt~sAVRi~H~p 240 (344)
T d2b3tb1 161 VYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRITHLP 240 (344)
T ss_dssp CHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEEEETT
T ss_pred ccceeeEeecceEEEeecccccccccccceeeEeeecccccccccccCcccceEEEecCCCccccchhhhhceeEEEEcC
Confidence 99999999999999999999999999999999999999987776899999999999999999999999999999999999
Q ss_pred CceEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 251 TGIVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 251 ~gi~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
|||+|.||++|||++||+.||++|++||++.+.++++.+.+..|++++++++||++|||||||.
T Consensus 241 tGi~v~~q~eRSq~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~p~ 304 (344)
T d2b3tb1 241 TGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQ 304 (344)
T ss_dssp TCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTT
T ss_pred CceEEEccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCceEeeecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999975
|
| >d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Release factor superfamily: Release factor family: Release factor domain: Peptide chain release factor 1, RF1 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.3e-85 Score=665.16 Aligned_cols=289 Identities=40% Similarity=0.625 Sum_probs=249.6
Q ss_pred HHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHH
Q psy2395 13 SKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNYKKINEDIITAKEMLNDLEMRNFALDEINLAKKRIFDI 92 (570)
Q Consensus 13 ~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~~~~~~d~~~~~~l~~D~~~~~~a~~e~~~~~~~~~~~ 92 (570)
++|+++|+++|++|+||+| +++++++++++|+++++.++++ ++++++.+|+.++.. .+.|++.+..+++++
T Consensus 2 ~~r~~eLe~~l~dPd~~~d--~~~~lske~~~L~~i~~l~~~~----~d~~el~el~~ee~d---~e~el~~l~~~l~~l 72 (333)
T d1rq0a_ 2 KEKKKEIEKLLARPDLTPE--QMKNYGMEYAKIEEIENITNRI----KETQEFIELLREEGE---NELEIEKYEKELDQL 72 (333)
T ss_dssp TTTTTHHHHHHHSSCCCHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHTTTTTTTT---CCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCCC---cHHHHHHHHHHHHHH
Confidence 5789999999999999975 6899999999999988877765 566777777732110 112566777777777
Q ss_pred HHHHHHhcCCCCcCCccceEEEEEcCCCchHHHHHHHHHHHHHHHHHHhcCCEEEEEEecccCCCCceEEEEEEeccchh
Q psy2395 93 ELEIKKLILPKDKNDKRNIFIEIRAGTGGDESALFVNDLLRMYIRFSERNYWKFEIISRSLSEIGGYKEIIARIIGLNVY 172 (570)
Q Consensus 93 ~~~l~~~ll~~~~~d~~~~~lei~~g~Gg~E~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~ 172 (570)
+.+|..+ .+|+|.++|||||+||+||+||++||+||++||++||+++||++++++.++++.+|+|+|++.|+|++||
T Consensus 73 ~~el~~l---~~p~D~~nailEIrAGaGG~EA~~fA~~L~RMY~r~Ae~kgwk~eil~~~~~e~gGiK~v~~~I~G~~ay 149 (333)
T d1rq0a_ 73 YQELLFL---LSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAY 149 (333)
T ss_dssp HHHHHHH---HSCSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHH
T ss_pred HHHhhcc---cchhcccccEEEEecCCCcHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhheeeccccch
Confidence 7766543 3667889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCcceeEEeCCCCCCCcccccceeEEEecCCCcccccccCCCCeEEEEeeccCCCCcccccccceEEEEecCCc
Q psy2395 173 SKLKFESGVHRVQRVPKTETQGRIHTSACTVAVIPEADEIEDININPADLRIDTYRASGAGGQHINKTDSAVRITHIPTG 252 (570)
Q Consensus 173 ~~~~~e~G~hr~~r~~~~~~~~~~~ts~~~v~~~p~~~~~~~~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~h~p~g 252 (570)
++||+|+|||||||+|||+++||+||||++|.|+|..++.+ +.|+++||+|+|+|||||||||||||+|||||||+|||
T Consensus 150 g~Lk~E~GvHRv~Rvp~~~~~~r~hTs~~~V~v~p~~~~~~-v~i~~~dl~i~~~RssG~GGQ~VNkt~sAVRitH~PTG 228 (333)
T d1rq0a_ 150 GILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKD-IEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTG 228 (333)
T ss_dssp HHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGG-SCCCGGGEEEEEECCCC----CCSSSSEEEEEEETTTC
T ss_pred hhhcccccceeEEEecccCCCCceEEEEEEEEEeccccccc-ccccccceeEEeecCCccccchhhhhhheeEEEEcCCc
Confidence 99999999999999999999999999999999999988775 99999999999999999999999999999999999999
Q ss_pred eEEEEeccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccCCCCccchhhh
Q psy2395 253 IVVQCQNDRSQHKNKAFALKILLARIKDSKLREQQSNTAKMRRLLIGSVQKKSPLNIFETNI 314 (570)
Q Consensus 253 i~~~~~~~rsq~~n~~~a~~~l~~~l~~~~~~~~~~~~~~~r~~~~~~~~~~~~iR~y~~~~ 314 (570)
|+|.||++|||++||+.||++|++||++.+.++++.+..+.|+.++++++||++|||||||+
T Consensus 229 i~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~p~ 290 (333)
T d1rq0a_ 229 IVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQ 290 (333)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTT
T ss_pred cEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCceeeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999975
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-49 Score=397.54 Aligned_cols=254 Identities=38% Similarity=0.645 Sum_probs=238.9
Q ss_pred chhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHH
Q psy2395 310 FETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDL 389 (570)
Q Consensus 310 y~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~ 389 (570)
....++|++++++++..++.+.+.++++++.+.+..++.+|..|+|+|||+|.++||+++|.|+|+||+|||+|+.+++.
T Consensus 21 ~da~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~g~PlqYI~G~~~F~~~~~~v~~~VlIPRpeTE~lv~~ 100 (274)
T d2b3ta1 21 RDAEILLEHVTGRGRTFILAFGETQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQ 100 (274)
T ss_dssp HHHHHHHHHHHTCCHHHHHHTTTCBCCHHHHHHHHHHHHHHHTTCCHHHHSCEEEETTEEEECCTTSCCCCTTHHHHHHH
T ss_pred HHHHHHHHHHhCcCHHHHhhCCCCCCCHHHHHHHHHHHHHHhcCcChhhhcCcEEEeeeEEEEeccccccccchhhhhhh
Confidence 46688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 390 IVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 390 ~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
++......+.+|||+|||||++++.++...+ +.+|+|+|+|+.|++.|++|+..++. .+++|+++|+++.++. .
T Consensus 101 ~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~---~~v~~~~~d~~~~~~~--~ 174 (274)
T d2b3ta1 101 ALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAI---KNIHILQSDWFSALAG--Q 174 (274)
T ss_dssp HHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTC---CSEEEECCSTTGGGTT--C
T ss_pred HhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCc---ccceeeecccccccCC--C
Confidence 9887767788999999999999999999986 68999999999999999999998632 3699999999887653 6
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGF 549 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf 549 (570)
+||+|||||||++..+...+..++.|||..|+++|.+|++++++++..+.++|+|||.++++++..|...+.+++.+.||
T Consensus 175 ~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~~q~~~v~~~l~~~gf 254 (274)
T d2b3ta1 175 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGY 254 (274)
T ss_dssp CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSSCHHHHHHHHHHTTC
T ss_pred ceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECchHHHHHHHHHHHCCC
Confidence 89999999999998887777788899999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCceEEEEEe
Q psy2395 550 SDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 550 ~~i~~~~D~~g~~R~~~~~~ 569 (570)
..+++++|++|++|+++|+|
T Consensus 255 ~~i~~~kDl~g~~R~v~~r~ 274 (274)
T d2b3ta1 255 HDVETCRDYGDNERVTLGRY 274 (274)
T ss_dssp TTCCEEECTTSSEEEEEEEC
T ss_pred CeEEEEECCCCCceEEEEeC
Confidence 99999999999999999998
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.2e-43 Score=352.99 Aligned_cols=244 Identities=28% Similarity=0.447 Sum_probs=218.0
Q ss_pred hhhhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHH
Q psy2395 311 ETNILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLI 390 (570)
Q Consensus 311 ~~~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~ 390 (570)
...+++++++++++..++++ +.++++++.+.+..++.||..|+|++||+|.++||+++|.|++++|+|||+|+.+++++
T Consensus 24 da~lll~~~l~~~~~~l~~~-~~~l~~~~~~~~~~~i~rR~~~~Pl~YI~g~~~F~~~~f~v~~~vlIPRpeTE~lv~~~ 102 (271)
T d1nv8a_ 24 EVLLIVSRVLGIRKEDLFLK-DLGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELA 102 (271)
T ss_dssp HHHHHHHHHHTCCGGGGCCS-SCCCCHHHHHHHHHHHHHHHTTCCHHHHHTEEEETTEEEECCTTSCCCCTTHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHhhC-CCCCCHHHHHHHHHHHHHhhCCCChhhhcCcEEEeeeEEEEecCccCchhhhhhhhhhh
Confidence 45789999999999999887 77899999999999999999999999999999999999999999999999999999998
Q ss_pred HhhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCC
Q psy2395 391 VKKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKK 469 (570)
Q Consensus 391 ~~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~ 469 (570)
+.... .+..+|+|+|||+|++++.+++. + +++|+|+|+|+.|++.|++|++.++ ...++.+..+|+++......+
T Consensus 103 ~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~--~~~~~~i~~~~~~~~~~~~~~ 178 (271)
T d1nv8a_ 103 LELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHG--VSDRFFVRKGEFLEPFKEKFA 178 (271)
T ss_dssp HHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTT--CTTSEEEEESSTTGGGGGGTT
T ss_pred hhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcC--CCceeEEeecccccccccccC
Confidence 87543 24568999999999999999865 4 6899999999999999999999863 344688999999887765557
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCC
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGF 549 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf 549 (570)
+||+|||||||++... ..+.++.|||+.||+||.+|+++|++++. ++|+|||++++++|+.|.+.+.+++.+.||
T Consensus 179 ~fDlIVsNPPYI~~~~--~l~~~~~~EP~~AL~gg~dGl~~~r~i~~---~~L~~~G~l~~Eig~~Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 179 SIEMILSNPPYVKSSA--HLPKDVLFEPPEALFGGEDGLDFYREFFG---RYDTSGKIVLMEIGEDQVEELKKIVSDTVF 253 (271)
T ss_dssp TCCEEEECCCCBCGGG--SCTTSCCCSCHHHHBCTTTSCHHHHHHHH---HCCCTTCEEEEECCTTCHHHHTTTSTTCEE
T ss_pred cccEEEEcccccCccc--ccceeeeeccccccccccchHHHHHHHHH---HhcCCCCEEEEEECHHHHHHHHHHHHhCCE
Confidence 9999999999998653 45667789999999999999999999975 689999999999999999999999888775
Q ss_pred eeEEEEecCCCCceEEEEEe
Q psy2395 550 SDIKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 550 ~~i~~~~D~~g~~R~~~~~~ 569 (570)
++|++|++|++++++
T Consensus 254 -----~kDl~g~~R~~~~~k 268 (271)
T d1nv8a_ 254 -----LKDSAGKYRFLLLNR 268 (271)
T ss_dssp -----EECTTSSEEEEEEEC
T ss_pred -----EeccCCCcEEEEEEE
Confidence 689999999999875
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.7e-26 Score=224.14 Aligned_cols=201 Identities=18% Similarity=0.178 Sum_probs=145.7
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHh-hcC------CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVK-KTF------EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALK 436 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~-~~~------~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~ 436 (570)
+|||+.|.+++++++||++++..+...+. ... .+..++||+|||||++++.++...+ +++++|+|+|++|++
T Consensus 21 ~f~gl~~~v~~~~LiPr~~~r~~~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~ 99 (250)
T d2h00a1 21 EDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFN 99 (250)
T ss_dssp HHHCCCCCCCTTSCCCCHHHHHHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHH
T ss_pred HHcCceEEeCCCeecCCCCCHHHHHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHH
Confidence 58899999999999999888765433333 211 2346999999999999999999886 699999999999999
Q ss_pred HHHHHHHhhcccCCCCEEEEEcccccccc-----cCCCceeEEEECCCCCCCCCcccC---CCCccccccccccccCCC-
Q psy2395 437 IAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-----NYKKLFNIIVANPPYIPKGDIHLN---KGDLRFEPINALTDYSNG- 507 (570)
Q Consensus 437 ~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-----~~~~~fD~Iv~NPPy~~~~~~~~~---~~~~~~ep~~al~~~~~g- 507 (570)
.|++|+..|+ ...++.++..+....+. ...++||+|+|||||++..+.... .....++|..+++++..+
T Consensus 100 ~A~~N~~~n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el 177 (250)
T d2h00a1 100 YAKKNVEQNN--LSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEI 177 (250)
T ss_dssp HHHHHHHHTT--CTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTT
T ss_pred HHHHHHHHhC--CCcceeeeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCcccccc
Confidence 9999999873 45578888876544321 123689999999999986654422 222346788888776544
Q ss_pred ------hHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeEEEEecCCCCc-eEEEE
Q psy2395 508 ------LSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDIKSWRDLSGIE-RVTQG 567 (570)
Q Consensus 508 ------l~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~~~~D~~g~~-R~~~~ 567 (570)
+.++.++++++..++++.|++.+.++. .+.+.+..+|++.|+..+++..+.+|.. |.++|
T Consensus 178 ~~~gGe~~F~~~ii~es~~~~~~~g~~t~~ig~~~~l~~i~~~L~~~g~~~i~~ie~~qG~~~r~iia 245 (250)
T d2h00a1 178 MAEGGELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQGRTMRWALA 245 (250)
T ss_dssp HHHHTHHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEETTEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHHHhhcCcEEEEEecchhhHHHHHHHHHHcCCCeEEEEEecCCCEeEEEEE
Confidence 468999999999999999999888884 6788999999999999999999999975 44443
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=2.9e-19 Score=168.64 Aligned_cols=166 Identities=27% Similarity=0.381 Sum_probs=121.7
Q ss_pred eeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 368 LVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 368 ~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..|...+++|.+. +.++.|++.+ ...++.+|||+|||+|.+++.++..+ .+|+|+|+|+.+++.|++|+..
T Consensus 23 ~~~~t~~gvF~~~~~d~~t~lLi~~l---~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~ 96 (194)
T d1dusa_ 23 LKFKTDSGVFSYGKVDKGTKILVENV---VVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKL 96 (194)
T ss_dssp EEEEEETTSTTTTSCCHHHHHHHHHC---CCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEcCCCccCCCCcCHHHHHHHHhC---CcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHH
Confidence 4566688998776 4566766654 23567899999999999999998765 4899999999999999999987
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
++. ...++++..+|+++..+ +++||+|++||||+.. .+....+++.+.++|+|
T Consensus 97 ~~l-~~~~i~~~~~d~~~~~~--~~~fD~Ii~~~p~~~~------------------------~~~~~~~l~~~~~~Lkp 149 (194)
T d1dusa_ 97 NNL-DNYDIRVVHSDLYENVK--DRKYNKIITNPPIRAG------------------------KEVLHRIIEEGKELLKD 149 (194)
T ss_dssp TTC-TTSCEEEEECSTTTTCT--TSCEEEEEECCCSTTC------------------------HHHHHHHHHHHHHHEEE
T ss_pred hCC-ccceEEEEEcchhhhhc--cCCceEEEEcccEEec------------------------chhhhhHHHHHHHhcCc
Confidence 642 23369999999987554 4789999999998632 23557899999999999
Q ss_pred CeEEEEEEcCCCHH-HHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 525 NGLLLIEHGYNQSN-LVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 525 gG~l~~~~~~~~~~-~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
||.+++++...+.. .+...+.+ .|..++..... +.-+++.++
T Consensus 150 gG~l~i~~~~~~~~~~~~~~l~~-~f~~~~~~~~~-~gf~vl~a~ 192 (194)
T d1dusa_ 150 NGEIWVVIQTKQGAKSLAKYMKD-VFGNVETVTIK-GGYRVLKSK 192 (194)
T ss_dssp EEEEEEEEESTHHHHHHHHHHHH-HHSCCEEEEEE-TTEEEEEEE
T ss_pred CcEEEEEEeCcCCHHHHHHHHHH-hCCcEEEEEec-CCcEEEEEE
Confidence 99999887765543 44444544 23333433332 333555554
|
| >d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: dsRBD-like superfamily: Peptidyl-tRNA hydrolase domain-like family: Peptidyl-tRNA hydrolase domain domain: Ict1 protein species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=7.4e-20 Score=154.58 Aligned_cols=67 Identities=31% Similarity=0.457 Sum_probs=60.8
Q ss_pred cccCCCCeEEEEeeccCCCCcccccccceEEEE-------ecC-----------------Cc-eEEEEeccccHHHHHHH
Q psy2395 215 ININPADLRIDTYRASGAGGQHINKTDSAVRIT-------HIP-----------------TG-IVVQCQNDRSQHKNKAF 269 (570)
Q Consensus 215 ~~i~~~~~~~~~~r~~g~ggq~vnk~~s~v~~~-------h~p-----------------~g-i~~~~~~~rsq~~n~~~ 269 (570)
..||.++|++.|+|||||||||||||+|+|.|+ ++| .| |+|+|+++|||++||++
T Consensus 15 ~~Ip~~~i~~~f~RSsGPGGQ~VNKv~TkV~Lr~~v~~s~~l~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RsQ~~Nr~~ 94 (112)
T d1j26a_ 15 SYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAE 94 (112)
T ss_dssp CCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHH
T ss_pred CccCHHHeEEEEEEcCCCCCCccceeccEEEEEEeccccccCCHHHHHHHHHHhhhcccCCCeEEEEEcccCCHHHHHHH
Confidence 579999999999999999999999999999997 233 23 99999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2395 270 ALKILLARIKDS 281 (570)
Q Consensus 270 a~~~l~~~l~~~ 281 (570)
|+++|.++|.++
T Consensus 95 a~~kL~~li~~A 106 (112)
T d1j26a_ 95 CLQKIRDMIAEA 106 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=8.8e-18 Score=164.53 Aligned_cols=152 Identities=24% Similarity=0.319 Sum_probs=120.2
Q ss_pred CeeeeecCCccccc---hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPR---PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 367 ~~~~~v~~~~~~pr---~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
...+.++|+.-.=. |.|..+++++... ..++.+|||+|||||.+++.+++.+ ++|+|+|+|+.|++.|++|++
T Consensus 88 ~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~-~~~g~~VLDiGcGsG~l~i~aa~~g---~~V~gvDis~~av~~A~~na~ 163 (254)
T d2nxca1 88 EIPLVIEPGMAFGTGHHETTRLALKALARH-LRPGDKVLDLGTGSGVLAIAAEKLG---GKALGVDIDPMVLPQAEANAK 163 (254)
T ss_dssp SEEEECCCC-----CCSHHHHHHHHHHHHH-CCTTCEEEEETCTTSHHHHHHHHTT---CEEEEEESCGGGHHHHHHHHH
T ss_pred ceEEEEccccccCccccchhhHHHHHHHhh-cCccCEEEEcccchhHHHHHHHhcC---CEEEEEECChHHHHHHHHHHH
Confidence 35566677653322 7888888888765 4578899999999999999988754 689999999999999999999
Q ss_pred hhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 444 KKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 444 ~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
.| +.++.++++|+.+..+. ++||+|++|..+ ..+..+++.+.++||
T Consensus 164 ~n----~~~~~~~~~d~~~~~~~--~~fD~V~ani~~----------------------------~~l~~l~~~~~~~Lk 209 (254)
T d2nxca1 164 RN----GVRPRFLEGSLEAALPF--GPFDLLVANLYA----------------------------ELHAALAPRYREALV 209 (254)
T ss_dssp HT----TCCCEEEESCHHHHGGG--CCEEEEEEECCH----------------------------HHHHHHHHHHHHHEE
T ss_pred Hc----CCceeEEeccccccccc--cccchhhhcccc----------------------------ccHHHHHHHHHHhcC
Confidence 74 55678999998765543 789999998431 245678888999999
Q ss_pred cCeEEEEE-EcCCCHHHHHHHHHHCCCeeEEEEe
Q psy2395 524 KNGLLLIE-HGYNQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 524 pgG~l~~~-~~~~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
|||++++. +-..+.+.+.+.+.++||..++...
T Consensus 210 pGG~lilSgil~~~~~~v~~~~~~~Gf~~~~~~~ 243 (254)
T d2nxca1 210 PGGRALLTGILKDRAPLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHTTCEEEEEEE
T ss_pred CCcEEEEEecchhhHHHHHHHHHHCCCEEEEEEE
Confidence 99999873 4457888999999999999887665
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.68 E-value=1.3e-16 Score=149.12 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=106.4
Q ss_pred ccchhHHHHHHHHHhh-cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 378 IPRPETELLVDLIVKK-TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 378 ~pr~~t~~l~~~~~~~-~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
+|.|..+.+...++.. .+.++.+|||+|||+|.+++.+|+.+ .+|+|+|+|+.+++.|++|++.++ ...+++++
T Consensus 13 ~~~~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~---~~V~avD~~~~~l~~a~~n~~~~g--l~~~v~~~ 87 (186)
T d1l3ia_ 13 VPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHG--LGDNVTLM 87 (186)
T ss_dssp SCCCCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT--CCTTEEEE
T ss_pred CCCCChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc---eEEEEecCCHHHHHHHHHHHHHcC--CCcceEEE
Confidence 3445555444444443 34678899999999999999998653 589999999999999999999863 34579999
Q ss_pred EcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-CC
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-YN 535 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~~ 535 (570)
++|+.+.... ...||+|+++.+.. .+..+++.+.++|+|||++++... ..
T Consensus 88 ~gda~~~~~~-~~~~D~v~~~~~~~----------------------------~~~~~~~~~~~~LkpgG~lvi~~~~~e 138 (186)
T d1l3ia_ 88 EGDAPEALCK-IPDIDIAVVGGSGG----------------------------ELQEILRIIKDKLKPGGRIIVTAILLE 138 (186)
T ss_dssp ESCHHHHHTT-SCCEEEEEESCCTT----------------------------CHHHHHHHHHHTEEEEEEEEEEECBHH
T ss_pred ECchhhcccc-cCCcCEEEEeCccc----------------------------cchHHHHHHHHHhCcCCEEEEEeeccc
Confidence 9998765433 47899999987542 236788999999999999987654 34
Q ss_pred CHHHHHHHHHHCCCe
Q psy2395 536 QSNLVRKLLFKYGFS 550 (570)
Q Consensus 536 ~~~~l~~ll~~~Gf~ 550 (570)
+...+.+.+...||.
T Consensus 139 ~~~~~~~~l~~~~~~ 153 (186)
T d1l3ia_ 139 TKFEAMECLRDLGFD 153 (186)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHcCCC
Confidence 566677888888874
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.64 E-value=1.2e-15 Score=146.46 Aligned_cols=129 Identities=19% Similarity=0.253 Sum_probs=99.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.|++++..+ ...+++|+++|+.+ ++..+++||+|
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~i~~A~~~~~~~---~~~~i~~~~~d~~~-l~~~~~~fD~v 85 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQ-MPFTDERFHIV 85 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-C-CCSCTTCEEEE
T ss_pred CCCcCEEEEecccCcHHHHHHHHhC---CEEEEEECCHHHHhhhhhccccc---cccccccccccccc-ccccccccccc
Confidence 4678899999999999999999765 58999999999999999999874 23469999999965 55456899999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc-C-C-----------------
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG-Y-N----------------- 535 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~-~-~----------------- 535 (570)
+|+--+... .....+++++.++|+|||++++... . .
T Consensus 86 ~~~~~l~~~-------------------------~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 140 (231)
T d1vl5a_ 86 TCRIAAHHF-------------------------PNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDY 140 (231)
T ss_dssp EEESCGGGC-------------------------SCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHHHHHHHHCT
T ss_pred ccccccccc-------------------------CCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHHHHHHhhccc
Confidence 995332211 1247889999999999999887421 1 1
Q ss_pred ------CHHHHHHHHHHCCCeeEEEE
Q psy2395 536 ------QSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 536 ------~~~~l~~ll~~~Gf~~i~~~ 555 (570)
....+.++++++||..+++.
T Consensus 141 ~~~~~~~~~~~~~~l~~aGf~~~~~~ 166 (231)
T d1vl5a_ 141 SHHRAWKKSDWLKMLEEAGFELEELH 166 (231)
T ss_dssp TCCCCCBHHHHHHHHHHHTCEEEEEE
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 13567888999999887654
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.64 E-value=1.7e-15 Score=147.45 Aligned_cols=139 Identities=14% Similarity=0.144 Sum_probs=105.0
Q ss_pred HHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 386 LVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 386 l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
.+..+...+ ..++.+|||||||+|.++..+++.. +++|+|||+|+.+++.|++++..++ .+.+++|+++|+.+..
T Consensus 21 ~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~g--l~~~v~~~~~d~~~~~ 96 (245)
T d1nkva_ 21 KYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELG--VSERVHFIHNDAAGYV 96 (245)
T ss_dssp HHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTT--CTTTEEEEESCCTTCC
T ss_pred HHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhh--ccccchhhhhHHhhcc
Confidence 334444432 3578899999999999999999876 4799999999999999999998753 3457999999997753
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY---------- 534 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~---------- 534 (570)
.+++||+|++.-.+... ..+..+++++.+.|||||++++..+.
T Consensus 97 --~~~~fD~v~~~~~~~~~-------------------------~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~~ 149 (245)
T d1nkva_ 97 --ANEKCDVAACVGATWIA-------------------------GGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEI 149 (245)
T ss_dssp --CSSCEEEEEEESCGGGT-------------------------SSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHH
T ss_pred --ccCceeEEEEEehhhcc-------------------------CCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHHH
Confidence 35799999995322111 12378999999999999999884321
Q ss_pred ------------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 ------------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 ------------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
.....+...+.++||..+...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~aG~~~v~~~ 182 (245)
T d1nkva_ 150 AQACGVSSTSDFLTLPGLVGAFDDLGYDVVEMV 182 (245)
T ss_dssp HHTTTCSCGGGSCCHHHHHHHHHTTTBCCCEEE
T ss_pred HHHhccCCCcccCCHHHHHHHHHHcCCEEEEEE
Confidence 124567888999999877643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.64 E-value=3.5e-15 Score=145.14 Aligned_cols=144 Identities=15% Similarity=0.135 Sum_probs=108.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|++++.. .+.+++|+++|+.+... .++||+|+
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g---~~v~GvD~S~~ml~~A~~~~~~----~~~~v~~~~~d~~~~~~--~~~fD~i~ 106 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKF---KNTWAVDLSQEMLSEAENKFRS----QGLKPRLACQDISNLNI--NRKFDLIT 106 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGS---SEEEEECSCHHHHHHHHHHHHH----TTCCCEEECCCGGGCCC--SCCEEEEE
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhC---CccEeeccchhhhhhccccccc----cCccceeeccchhhhcc--cccccccc
Confidence 456799999999999999999765 5899999999999999999876 35579999999976322 47899999
Q ss_pred ECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--------------------
Q psy2395 476 ANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-------------------- 534 (570)
Q Consensus 476 ~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------- 534 (570)
|.. .+. .-...+....+++.+.++|+|||.+++.+..
T Consensus 107 ~~~~~~~----------------------~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (246)
T d1y8ca_ 107 CCLDSTN----------------------YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEV 164 (246)
T ss_dssp ECTTGGG----------------------GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTE
T ss_pred eeeeeee----------------------ccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcE
Confidence 821 100 0011245678999999999999998853210
Q ss_pred --------------------------------------CCHHHHHHHHHHCCCeeEEEEecCCCCc------e-EEEEEe
Q psy2395 535 --------------------------------------NQSNLVRKLLFKYGFSDIKSWRDLSGIE------R-VTQGKI 569 (570)
Q Consensus 535 --------------------------------------~~~~~l~~ll~~~Gf~~i~~~~D~~g~~------R-~~~~~~ 569 (570)
...+++.++++++||+.+.++.++...+ | ++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~~~~~~~s~r~~~v~kk 244 (246)
T d1y8ca_ 165 FYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKL 244 (246)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEE
T ss_pred EEEEeeccCCcceeEEEEEEEecCCceEEEEEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCceEEEEEEe
Confidence 1247788999999999999988775543 3 466665
Q ss_pred C
Q psy2395 570 S 570 (570)
Q Consensus 570 ~ 570 (570)
+
T Consensus 245 ~ 245 (246)
T d1y8ca_ 245 G 245 (246)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.63 E-value=2.8e-15 Score=144.72 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=98.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||+|||+|.++..+++.+ .+|+|||+|+.|++.|++++..++ -.++.++++|+.+ ++..+++||+|
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~---~~~~~~~~~d~~~-~~~~~~~fD~v 86 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKG---VENVRFQQGTAES-LPFPDDSFDII 86 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHT---CCSEEEEECBTTB-CCSCTTCEEEE
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccc---ccccccccccccc-cccccccccee
Confidence 4688999999999999999999765 589999999999999999998752 2359999999965 55556899999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cCC------------------
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GYN------------------ 535 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~~------------------ 535 (570)
+|+-.+... .....+++++.++|||||++++.. ...
T Consensus 87 ~~~~~l~~~-------------------------~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (234)
T d1xxla_ 87 TCRYAAHHF-------------------------SDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDP 141 (234)
T ss_dssp EEESCGGGC-------------------------SCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHCT
T ss_pred eeeceeecc-------------------------cCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhhCCC
Confidence 995332211 124789999999999999988742 111
Q ss_pred ------CHHHHHHHHHHCCCeeEEE
Q psy2395 536 ------QSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 536 ------~~~~l~~ll~~~Gf~~i~~ 554 (570)
....+..++.+.||....+
T Consensus 142 ~~~~~~~~~~~~~~~~~~gf~~~~~ 166 (234)
T d1xxla_ 142 SHVRESSLSEWQAMFSANQLAYQDI 166 (234)
T ss_dssp TCCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred cccccCCHHHHHHHHHHCCCceeEE
Confidence 1345677888899876543
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.62 E-value=1e-15 Score=138.25 Aligned_cols=108 Identities=16% Similarity=0.239 Sum_probs=87.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||||.+++.++.++ ..+|+++|+|+.+++.+++|+..++ ...+++++++|+.+.+....++||+|++
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~--~~~~~~ii~~D~~~~l~~~~~~fDiIf~ 89 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTK--AENRFTLLKMEAERAIDCLTGRFDLVFL 89 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTT--CGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcc--cccchhhhcccccccccccccccceeEe
Confidence 57899999999999999988776 3699999999999999999999753 3346999999998766655689999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH--hhccccCeEEEEEEcC
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA--SKYLVKNGLLLIEHGY 534 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~--~~~LkpgG~l~~~~~~ 534 (570)
||||.. ..+...+..+ .++|+|+|.++++++.
T Consensus 90 DPPy~~--------------------------~~~~~~l~~i~~~~~L~~~g~iiiE~~~ 123 (152)
T d2esra1 90 DPPYAK--------------------------ETIVATIEALAAKNLLSEQVMVVCETDK 123 (152)
T ss_dssp CCSSHH--------------------------HHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred chhhcc--------------------------chHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence 999852 1233444433 3579999999998764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.61 E-value=1e-15 Score=140.96 Aligned_cols=139 Identities=18% Similarity=0.311 Sum_probs=95.4
Q ss_pred ccccCeeeeecCCccccchhHH----HHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy2395 363 KEFYGLVLNITSDVLIPRPETE----LLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438 (570)
Q Consensus 363 ~~f~~~~~~v~~~~~~pr~~t~----~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A 438 (570)
..|.+..+.++.+ . ||.+. .+..++... ...+.+|||+|||||.+++.++.++ ++|+++|+|+.+++.|
T Consensus 7 g~~kg~~l~~~~~-~--Rpt~~~v~e~lf~~l~~~-~~~g~~vLDl~~G~G~~~i~a~~~g---a~vv~vD~~~~a~~~~ 79 (171)
T d1ws6a1 7 GKARGVALKVPAS-A--RPSPVRLRKALFDYLRLR-YPRRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLL 79 (171)
T ss_dssp GGGTTCEECCCTT-C--CCCCHHHHHHHHHHHHHH-CTTCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHH
T ss_pred ccccCCEeCCCCC-C--CCCcHHHHHHHHHHhhcc-ccCCCeEEEeccccchhhhhhhhcc---chhhhcccCHHHHhhh
Confidence 4566777776543 3 44444 444444433 3467799999999999999988764 6899999999999999
Q ss_pred HHHHHhhcccCCCCEEEEEcccccc-cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 439 KKNAKKKLTKYNIPIKFIKSNWYNN-LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 439 ~~n~~~~~~~~~~~v~~~~~D~~~~-l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
++|++.++ ...++.+..+|.+.. ......+||+|++||||.... ...+..+++
T Consensus 80 ~~N~~~~~--~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPPY~~~~-----------------------~~~l~~l~~- 133 (171)
T d1ws6a1 80 KENVRRTG--LGARVVALPVEVFLPEAKAQGERFTVAFMAPPYAMDL-----------------------AALFGELLA- 133 (171)
T ss_dssp HHHHHHHT--CCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTTSCT-----------------------THHHHHHHH-
T ss_pred hHHHHhhc--cccceeeeehhcccccccccCCccceeEEccccccCH-----------------------HHHHHHHHH-
Confidence 99999863 233455555554321 122346899999999996311 123344443
Q ss_pred HhhccccCeEEEEEEcCC
Q psy2395 518 ASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 518 ~~~~LkpgG~l~~~~~~~ 535 (570)
..+|+|||+++++++..
T Consensus 134 -~~ll~~~g~ivie~~~~ 150 (171)
T d1ws6a1 134 -SGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp -HTCEEEEEEEEEEEETT
T ss_pred -cCCcCCCeEEEEEecCC
Confidence 36899999999988653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=8.5e-15 Score=140.51 Aligned_cols=134 Identities=15% Similarity=0.237 Sum_probs=101.1
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcC-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSK-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
.+++.+|||+|||||..+..+++... ++++|+|+|+|+.|++.|++++... ....++.+..+|+.+. + ...+|+
T Consensus 37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~--~~~~~~~~~~~d~~~~-~--~~~~d~ 111 (225)
T d1im8a_ 37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHV-E--IKNASM 111 (225)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS--CCSSCEEEECSCTTTC-C--CCSEEE
T ss_pred cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh--cccchhhhccchhhcc-c--ccccee
Confidence 45778999999999999999997642 4789999999999999999998753 2344688899988543 3 267999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------------------
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------------------- 534 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------------------- 534 (570)
|+++--++.. ..+....+++++++.|+|||.+++....
T Consensus 112 i~~~~~l~~~-----------------------~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~ 168 (225)
T d1im8a_ 112 VILNFTLQFL-----------------------PPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK 168 (225)
T ss_dssp EEEESCGGGS-----------------------CGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHH
T ss_pred eEEeeecccc-----------------------ChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHH
Confidence 9985321100 1124478999999999999999874211
Q ss_pred -----------------------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 -----------------------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 -----------------------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
...+.+..+|+++||+.|+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~ 213 (225)
T d1im8a_ 169 RANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWF 213 (225)
T ss_dssp HHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEE
T ss_pred HHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEee
Confidence 1234667889999999998764
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.61 E-value=4.5e-15 Score=147.47 Aligned_cols=141 Identities=13% Similarity=0.228 Sum_probs=105.8
Q ss_pred HHHHHHHhh-cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKK-TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~-~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
.+++.+... ..+++.+|||+|||+|.++..+++.. +++|+|+|+|+.+++.|++++...+ ...+++|+++|+.+
T Consensus 54 ~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~g--l~~~v~~~~~d~~~- 128 (282)
T d2o57a1 54 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLE- 128 (282)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHT--CTTTEEEEECCTTS-
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccc--cccccccccccccc-
Confidence 344444332 23578899999999999999999876 4799999999999999999988653 34579999999966
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------- 534 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------- 534 (570)
++.++++||+|++.-.+... .....+++++.++|+|||++++....
T Consensus 129 l~~~~~sfD~V~~~~~l~h~-------------------------~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 183 (282)
T d2o57a1 129 IPCEDNSYDFIWSQDAFLHS-------------------------PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSS 183 (282)
T ss_dssp CSSCTTCEEEEEEESCGGGC-------------------------SCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGG
T ss_pred ccccccccchhhccchhhhc-------------------------cCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhH
Confidence 45556899999995432211 12367899999999999999874311
Q ss_pred -------------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 535 -------------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 535 -------------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
.......+++.++||..+.+.
T Consensus 184 ~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 184 IQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp GHHHHHHHTCSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHcCCceEEEE
Confidence 113556788999999887654
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.4e-15 Score=140.08 Aligned_cols=166 Identities=15% Similarity=0.165 Sum_probs=112.3
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.|.|..+...++. ..||.+..+.+.+...+. -.+.+|||+|||||.+++.++.++ ..+|++||+|+.+++.+++|
T Consensus 9 ~~kg~~l~~~~~~-~~RPt~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N 85 (183)
T d2fpoa1 9 QWRGRKLPVPDSP-GLRPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKN 85 (183)
T ss_dssp GGTTCEEECCCC-------CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHH
T ss_pred ccCCCEecCCCCC-CcCcCcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHH
Confidence 4667777765553 457777666555544322 256799999999999999988877 36999999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh--
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS-- 519 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~-- 519 (570)
+..+ ...++.++++|+++.+.....+||+|++||||... .+..++..+.
T Consensus 86 ~~~~---~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~~~--------------------------~~~~~l~~l~~~ 136 (183)
T d2fpoa1 86 LATL---KAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFRRG--------------------------LLEETINLLEDN 136 (183)
T ss_dssp HHHT---TCCSEEEECSCHHHHHSSCCCCEEEEEECCSSSTT--------------------------THHHHHHHHHHT
T ss_pred Hhhc---cccceeeeeecccccccccccccCEEEEcCccccc--------------------------hHHHHHHHHHHC
Confidence 9874 23368999999988776556789999999999632 2234444443
Q ss_pred hccccCeEEEEEEcCCCH-HHHHHHHHHCCCeeEEEEecCCCCceEEEEE
Q psy2395 520 KYLVKNGLLLIEHGYNQS-NLVRKLLFKYGFSDIKSWRDLSGIERVTQGK 568 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~~~~-~~l~~ll~~~Gf~~i~~~~D~~g~~R~~~~~ 568 (570)
..|+++|++++++..... +. ...+|..++. ...|...+.+-+
T Consensus 137 ~~L~~~~iIiiE~~~~~~~~~-----~~~~~~i~k~--k~yG~t~i~~~~ 179 (183)
T d2fpoa1 137 GWLADEALIYVESEVENGLPT-----VPANWSLHRE--KVAGQVAYRLYQ 179 (183)
T ss_dssp TCEEEEEEEEEEEEGGGCSCC-----CCTTEEEEEE--EEETTEEEEEEE
T ss_pred CCCCCCeEEEEEecCcCCccc-----CCCCcEEEEE--EEeCcEEEEEEE
Confidence 469999999998753211 10 0135665543 234666655544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.60 E-value=1.9e-15 Score=147.16 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=105.0
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||||+++..+|+...+..+|+++|+++++++.|++|+..++ ...++++..+|+.+.++ +..||.|
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~--~~~nv~~~~~Di~~~~~--~~~fD~V 158 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIADFIS--DQMYDAV 158 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTTCCC--SCCEEEE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhc--CCCceEEEEeeeecccc--cceeeee
Confidence 3688999999999999999999876456899999999999999999998642 33479999999977654 3789999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~ 553 (570)
++|.|- | ..+++.+.+.|||||++++..+. .|...+.+.+++.||..++
T Consensus 159 ~ld~p~----------------p--------------~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf~~i~ 208 (250)
T d1yb2a1 159 IADIPD----------------P--------------WNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGMHHLE 208 (250)
T ss_dssp EECCSC----------------G--------------GGSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTEEEEE
T ss_pred eecCCc----------------h--------------HHHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCCceeE
Confidence 998651 1 24567888899999999987775 5677788888889998776
Q ss_pred EEe
Q psy2395 554 SWR 556 (570)
Q Consensus 554 ~~~ 556 (570)
++.
T Consensus 209 ~~E 211 (250)
T d1yb2a1 209 TVE 211 (250)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.59 E-value=1.7e-14 Score=140.12 Aligned_cols=106 Identities=17% Similarity=0.382 Sum_probs=83.3
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
...++.+|||+|||||.++..+++.+ .+|+|||+|+.|++.|++++.. .+.++++.++|+.+ ++. +++||+
T Consensus 38 ~~~~~~~iLDiGcGtG~~~~~l~~~~---~~v~gvD~s~~mi~~a~~~~~~----~~~~i~~~~~d~~~-l~~-~~~fD~ 108 (251)
T d1wzna1 38 AKREVRRVLDLACGTGIPTLELAERG---YEVVGLDLHEEMLRVARRKAKE----RNLKIEFLQGDVLE-IAF-KNEFDA 108 (251)
T ss_dssp CSSCCCEEEEETCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHH----TTCCCEEEESCGGG-CCC-CSCEEE
T ss_pred cCCCCCEEEEeCCCCCccchhhcccc---eEEEEEeecccccccccccccc----ccccchheehhhhh-ccc-ccccch
Confidence 34566799999999999999999764 6899999999999999999886 35579999999966 333 368999
Q ss_pred EEECC-CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 474 IVANP-PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 474 Iv~NP-Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
|+|.- .+. .. .......+++.++++|+|||++++.
T Consensus 109 I~~~~~~~~----------------------~~-~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 109 VTMFFSTIM----------------------YF-DEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp EEECSSGGG----------------------GS-CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred Hhhhhhhhh----------------------cC-ChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 99831 000 00 1134578999999999999999764
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.58 E-value=2.3e-14 Score=140.54 Aligned_cols=155 Identities=13% Similarity=0.192 Sum_probs=112.9
Q ss_pred Ceeeeec--CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 367 GLVLNIT--SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 367 ~~~~~v~--~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
|..|.++ ..+|.|+..++.. .+.. ...++.+|||+|||+|.+++.+|+.+ .++|+|+|+||.+++.+++|++.
T Consensus 78 g~~~~~d~~~~~f~~~~~~er~--ri~~-~~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~ 152 (260)
T d2frna1 78 GIKYKLDVAKIMFSPANVKERV--RMAK-VAKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHL 152 (260)
T ss_dssp TEEEEEETTTSCCCGGGHHHHH--HHHH-HCCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHH
T ss_pred CeeEEeccccccEecCCHHHHH--HHHh-hcCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHH
Confidence 4555555 4577787555532 1222 23578899999999999999999875 46999999999999999999998
Q ss_pred hcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcccc
Q psy2395 445 KLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVK 524 (570)
Q Consensus 445 ~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkp 524 (570)
|+ ...+++++++|+.+... .+.||.|++|||+.. ..++..+.+.|++
T Consensus 153 n~--l~~~v~~~~~D~~~~~~--~~~~D~Ii~~~p~~~-----------------------------~~~l~~a~~~l~~ 199 (260)
T d2frna1 153 NK--VEDRMSAYNMDNRDFPG--ENIADRILMGYVVRT-----------------------------HEFIPKALSIAKD 199 (260)
T ss_dssp TT--CTTTEEEECSCTTTCCC--CSCEEEEEECCCSSG-----------------------------GGGHHHHHHHEEE
T ss_pred hC--CCceEEEEEcchHHhcc--CCCCCEEEECCCCch-----------------------------HHHHHHHHhhcCC
Confidence 74 34569999999977554 378999999988542 2345566778999
Q ss_pred CeEEEEE-E-c-----CCCHHHHHHHHHHCCCeeE----EEEecCC
Q psy2395 525 NGLLLIE-H-G-----YNQSNLVRKLLFKYGFSDI----KSWRDLS 559 (570)
Q Consensus 525 gG~l~~~-~-~-----~~~~~~l~~ll~~~Gf~~i----~~~~D~~ 559 (570)
||++.+. + . ....+.+.++....||... ...++++
T Consensus 200 gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~~~~Vk~ya 245 (260)
T d2frna1 200 GAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYA 245 (260)
T ss_dssp EEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEEEEEEEEET
T ss_pred CCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEEEEEEECcC
Confidence 9998552 1 1 1235667788888998752 2345665
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.57 E-value=3.6e-14 Score=143.04 Aligned_cols=140 Identities=11% Similarity=0.176 Sum_probs=102.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc---CCCcee
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN---YKKLFN 472 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD 472 (570)
.++.+|||+|||||.+++.++..+ ...|++||+|+.+++.|++|+..|+.. ..+++|+++|+++.+.. ...+||
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~-~~~~~~i~~d~~~~l~~~~~~~~~fD 219 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLD-MANHQLVVMDVFDYFKYARRHHLTYD 219 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCC-CTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred hCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhccc-CcceEEEEccHHHHHHHHHhhcCCCC
Confidence 357899999999999999888654 458999999999999999999987532 24699999999876542 236899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHHH----HHHHHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNLV----RKLLFK 546 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~l----~~ll~~ 546 (570)
+||+|||.+..... +-......|.+++..+.++|+|||++++.+.. -..+.+ .+.+..
T Consensus 220 ~Ii~DPP~f~~~~~----------------~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~~~~f~~~v~~a~~~ 283 (317)
T d2b78a2 220 IIIIDPPSFARNKK----------------EVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMTVSQFKKQIEKGFGK 283 (317)
T ss_dssp EEEECCCCC---------------------CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcChhhccchh----------------HHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCHHHHHHHHHHHHHH
Confidence 99999996643211 01123456789999999999999999986643 233333 344445
Q ss_pred CCCeeEEE
Q psy2395 547 YGFSDIKS 554 (570)
Q Consensus 547 ~Gf~~i~~ 554 (570)
.|...+.+
T Consensus 284 ~~~~~~~~ 291 (317)
T d2b78a2 284 QKHTYLDL 291 (317)
T ss_dssp CCCEEEEE
T ss_pred cCCeEEEe
Confidence 66665544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.57 E-value=1.8e-14 Score=145.54 Aligned_cols=131 Identities=24% Similarity=0.289 Sum_probs=98.1
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---ccCCCceeE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---QNYKKLFNI 473 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---~~~~~~fD~ 473 (570)
++.+|||+|||+|.+++.+|.. +.+|+++|+|+.+++.|++|+..|+. .+++++++|+++.+ ....++||+
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl---~~~~~i~~d~~~~~~~~~~~~~~fD~ 218 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGL---GNVRVLEANAFDLLRRLEKEGERFDL 218 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTC---TTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCC---CCcceeeccHHHHhhhhHhhhcCCCE
Confidence 5789999999999999998854 47999999999999999999998642 25999999997753 233468999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC--CCHHH----HHHHHHHC
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--NQSNL----VRKLLFKY 547 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~----l~~ll~~~ 547 (570)
|++|||++..... ........|..++..+.++|+|||.+++.... -..+. +.+.+..+
T Consensus 219 Vi~DpP~~~~~~~----------------~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v~~a~~~a 282 (318)
T d1wxxa2 219 VVLDPPAFAKGKK----------------DVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDA 282 (318)
T ss_dssp EEECCCCSCCSTT----------------SHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEcCCccccchH----------------HHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHHHHHHHHc
Confidence 9999997643311 00122356788999999999999999886543 23333 34445556
Q ss_pred CC
Q psy2395 548 GF 549 (570)
Q Consensus 548 Gf 549 (570)
|-
T Consensus 283 ~~ 284 (318)
T d1wxxa2 283 HR 284 (318)
T ss_dssp TC
T ss_pred CC
Confidence 64
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=9.5e-15 Score=143.04 Aligned_cols=131 Identities=18% Similarity=0.232 Sum_probs=104.3
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||||++++.||+...+..+|+++|+++++++.|++|++........++.+.++|+.+. ...++.||.|
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-~~~~~~fDaV 172 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVDRA 172 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEEEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-cccCCCcceE
Confidence 468999999999999999999998655789999999999999999999865323345799999999653 3335799999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHH-HCCCeeE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLF-KYGFSDI 552 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~-~~Gf~~i 552 (570)
++|-| +| ..++..+.+.|||||.+++.+|. .|...+.+.++ +.||..+
T Consensus 173 ~ldlp----------------~P--------------~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i 222 (264)
T d1i9ga_ 173 VLDML----------------AP--------------WEVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEP 222 (264)
T ss_dssp EEESS----------------CG--------------GGGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCC
T ss_pred EEecC----------------CH--------------HHHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecc
Confidence 99754 12 24567888999999999887776 57777777775 5679876
Q ss_pred EEEe
Q psy2395 553 KSWR 556 (570)
Q Consensus 553 ~~~~ 556 (570)
+++.
T Consensus 223 ~~~E 226 (264)
T d1i9ga_ 223 RAWE 226 (264)
T ss_dssp EEEC
T ss_pred eEEE
Confidence 6553
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.56 E-value=1.2e-14 Score=144.34 Aligned_cols=107 Identities=10% Similarity=0.192 Sum_probs=86.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++...+.+.+|+|+|+|+.+++.|++++.. .+.+++|.++|+.+ ++. .++||+|+
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~----~~~~~~f~~~d~~~-~~~-~~~fD~v~ 99 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL----LPYDSEFLEGDATE-IEL-NDKYDIAI 99 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS----SSSEEEEEESCTTT-CCC-SSCEEEEE
T ss_pred CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc----cccccccccccccc-ccc-cCCceEEE
Confidence 4678999999999999999998776668999999999999999999985 45579999999965 332 36899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
++..+...+ ....+++++.+.|||||++++..+
T Consensus 100 ~~~~l~~~~-------------------------d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 100 CHAFLLHMT-------------------------TPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp EESCGGGCS-------------------------SHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred EehhhhcCC-------------------------CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 975432111 236789999999999999987554
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=1.1e-14 Score=143.22 Aligned_cols=128 Identities=18% Similarity=0.195 Sum_probs=105.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
..++.+|||+|||||+++..+|+...+.++|+++|+++++++.|++|+..++ ...++.+..+|+..... ...||.|
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g--~~~~v~~~~~d~~~~~~--~~~~D~V 176 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--LIERVTIKVRDISEGFD--EKDVDAL 176 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--CGGGEEEECCCGGGCCS--CCSEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhc--cccCcEEEecccccccc--ccceeee
Confidence 4689999999999999999999887557899999999999999999998753 33468999999865443 3689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeEE
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i~ 553 (570)
+.+.|- | ..+++.+.++|||||.+++.++. +|...+.+.+++.||..++
T Consensus 177 ~~d~p~----------------p--------------~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 177 FLDVPD----------------P--------------WNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIE 226 (266)
T ss_dssp EECCSC----------------G--------------GGTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSSEEEEE
T ss_pred EecCCC----------------H--------------HHHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCCceeEE
Confidence 997651 1 34677888999999999887765 6778888889999999888
Q ss_pred EEe
Q psy2395 554 SWR 556 (570)
Q Consensus 554 ~~~ 556 (570)
++.
T Consensus 227 ~~E 229 (266)
T d1o54a_ 227 VWE 229 (266)
T ss_dssp EEC
T ss_pred EEE
Confidence 775
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.56 E-value=2.8e-14 Score=137.41 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=106.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE-
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII- 474 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I- 474 (570)
+++.+|||+|||||..+..+|..++ +..|+|+|+||.|++.|+.++.. ..++.++.+|........+..+|++
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~-----~~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAE-----RENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTT-----CTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred CCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhh-----hcccceEEEeeccCcccccccceeEE
Confidence 6789999999999999999999876 57999999999999999998764 3457788898876655444455554
Q ss_pred -EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------CC----HHHHHHH
Q psy2395 475 -VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------NQ----SNLVRKL 543 (570)
Q Consensus 475 -v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------~~----~~~l~~l 543 (570)
+++.++. .....++.++.++|||||.+++.... .. .+++.+.
T Consensus 147 i~~~~~~~---------------------------~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~ 199 (230)
T d1g8sa_ 147 IYEDVAQP---------------------------NQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEI 199 (230)
T ss_dssp EEECCCST---------------------------THHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHH
T ss_pred eeccccch---------------------------HHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHH
Confidence 4432211 23467889999999999998876421 11 3456678
Q ss_pred HHHCCCeeEEEEecCCCCce---EEEEEeC
Q psy2395 544 LFKYGFSDIKSWRDLSGIER---VTQGKIS 570 (570)
Q Consensus 544 l~~~Gf~~i~~~~D~~g~~R---~~~~~~~ 570 (570)
|+++||..++.. |+.+.+| +++|.|+
T Consensus 200 L~~aGF~ive~i-dL~py~~~H~~vvg~y~ 228 (230)
T d1g8sa_ 200 LEAGGFKIVDEV-DIEPFEKDHVMFVGIWE 228 (230)
T ss_dssp HHHHTEEEEEEE-ECTTTSTTEEEEEEEEC
T ss_pred HHHcCCEEEEEe-cCCCCcCCeEEEEEEec
Confidence 889999988765 6777655 7888774
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=7e-15 Score=149.09 Aligned_cols=120 Identities=25% Similarity=0.314 Sum_probs=95.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCce
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLF 471 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~f 471 (570)
..++.+|||+|||+|.+++.++..+ ..+|+++|+|+.+++.|++|+..|+ ...+++++++|+++.+. ....+|
T Consensus 143 ~~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ng--l~~~~~~~~~d~~~~~~~~~~~~~~f 218 (324)
T d2as0a2 143 VQPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNG--VEDRMKFIVGSAFEEMEKLQKKGEKF 218 (324)
T ss_dssp CCTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTT--CGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred cCCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcC--CCccceeeechhhhhhHHHHhccCCC
Confidence 4568899999999999999999775 3589999999999999999999875 33468999999977542 234689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
|+|++|||+...... +...+...|.+++..+.++|+|||++++....
T Consensus 219 D~Vi~DpP~~~~~~~----------------~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s 265 (324)
T d2as0a2 219 DIVVLDPPAFVQHEK----------------DLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS 265 (324)
T ss_dssp EEEEECCCCSCSSGG----------------GHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred CchhcCCccccCCHH----------------HHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999998754311 01123456789999999999999999886543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=8.3e-15 Score=139.60 Aligned_cols=109 Identities=19% Similarity=0.321 Sum_probs=85.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++.. .+..+.++++|+.+ ++..+++||+|
T Consensus 35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~----~~~~~~~~~~d~~~-l~~~~~~fD~I 106 (226)
T d1ve3a1 35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKS----RESNVEFIVGDARK-LSFEDKTFDYV 106 (226)
T ss_dssp CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHH----TTCCCEEEECCTTS-CCSCTTCEEEE
T ss_pred cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhcc----cccccccccccccc-ccccCcCceEE
Confidence 356789999999999999999975 36899999999999999999875 34568899999865 45556899999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+++--+. |- .......+++.+.++|||||.+++.+..
T Consensus 107 ~~~~~l~-------------~~----------~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 107 IFIDSIV-------------HF----------EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp EEESCGG-------------GC----------CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEecchh-------------hC----------ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9952211 10 0123568999999999999999887643
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.55 E-value=3.5e-14 Score=134.00 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=76.3
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
+++|...+..++..+.....-.+.+|||+|||||.+++.++..+ ..+|+|+|+|+.+++.|++|+.. ++.+..+
T Consensus 25 y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g--~~~v~~vdi~~~~~~~a~~N~~~----~~~~~~~ 98 (201)
T d1wy7a1 25 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGE----FKGKFKV 98 (201)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGG----GTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcC--CCEEEEEcCcHHHHHHHHHHHHH----cCCCceE
Confidence 45666556665544443322367899999999999999988765 36999999999999999999886 4567899
Q ss_pred EEcccccccccCCCceeEEEECCCCCC
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIP 482 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~ 482 (570)
+.+|+... .++||+||+||||..
T Consensus 99 ~~~d~~~~----~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 99 FIGDVSEF----NSRVDIVIMNPPFGS 121 (201)
T ss_dssp EESCGGGC----CCCCSEEEECCCCSS
T ss_pred EECchhhh----CCcCcEEEEcCcccc
Confidence 99998552 368999999999964
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.55 E-value=1.1e-14 Score=135.28 Aligned_cols=140 Identities=21% Similarity=0.233 Sum_probs=103.1
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.|.|..+...++ ..-||.+..+-+.+...+. -.+.+|||++||||.+++.++.++ ..+|++||.|+.+++.+++|
T Consensus 7 ~~kg~~l~~~~~-~~~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N 83 (182)
T d2fhpa1 7 EYGGRRLKALDG-DNTRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKEN 83 (182)
T ss_dssp TTTTCBCCCCCC-CSSCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHH
T ss_pred ccCCCEecCCCC-CCcCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHH
Confidence 344555554443 3346777666666655543 257899999999999999999887 36899999999999999999
Q ss_pred HHhhcccCCCCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHH
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNA 518 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~ 518 (570)
+..++ ...+++++++|+++.+.. ...+||+|++||||... .+..++..+
T Consensus 84 ~~~~~--~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflDPPY~~~--------------------------~~~~~l~~i 135 (182)
T d2fhpa1 84 IAITK--EPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQ--------------------------EIVSQLEKM 135 (182)
T ss_dssp HHHHT--CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGC--------------------------CHHHHHHHH
T ss_pred hhhhh--cccccccccccchhhhhhhcccCCCcceEEechhhhhh--------------------------HHHHHHHHH
Confidence 98753 334699999999775532 23589999999999521 123444444
Q ss_pred --hhccccCeEEEEEEcC
Q psy2395 519 --SKYLVKNGLLLIEHGY 534 (570)
Q Consensus 519 --~~~LkpgG~l~~~~~~ 534 (570)
..+|+++|+++++++.
T Consensus 136 ~~~~~L~~~giIi~E~~~ 153 (182)
T d2fhpa1 136 LERQLLTNEAVIVCETDK 153 (182)
T ss_dssp HHTTCEEEEEEEEEEEET
T ss_pred HHCCCCCCCEEEEEEcCC
Confidence 3579999999998864
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=99.55 E-value=9.3e-15 Score=148.44 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=115.3
Q ss_pred CccccchhHHHHHHHHHhhcC-CCCCEEEEECCcccHHHHHHHHhc----CCCcEEEEEeCCHHHHHHHHHHHHhhcccC
Q psy2395 375 DVLIPRPETELLVDLIVKKTF-EKKIKLLEMGTGSGAIAIAIAIYS----KNKIEIIATDISKFALKIAKKNAKKKLTKY 449 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~-~~~~~VLDlGcGtG~i~l~la~~~----~~~~~V~gvDis~~al~~A~~n~~~~~~~~ 449 (570)
.+|+|++.++.|++.+..... .++.+|||+|||+|.+++.+.... ....+++|+|+++.++..|+.|+..+
T Consensus 94 ~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~---- 169 (328)
T d2f8la1 94 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ---- 169 (328)
T ss_dssp GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----
T ss_pred eEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh----
Confidence 357899999988887765433 456789999999999999887542 22458999999999999999998863
Q ss_pred CCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 450 NIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 450 ~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
+....+.++|...... ..+||+|++||||.......... .............+..++..+.+.|+|||+++
T Consensus 170 ~~~~~~~~~d~~~~~~--~~~fD~vi~NPPy~~~~~~~~~~-------~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~ 240 (328)
T d2f8la1 170 RQKMTLLHQDGLANLL--VDPVDVVISDLPVGYYPDDENAK-------TFELCREEGHSFAHFLFIEQGMRYTKPGGYLF 240 (328)
T ss_dssp TCCCEEEESCTTSCCC--CCCEEEEEEECCCSEESCHHHHT-------TSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEE
T ss_pred hhhhhhhccccccccc--cccccccccCCCCCCCccchhhh-------hcchhcccCcchHHHHHHHHHHHhcCCCCceE
Confidence 4567888888766443 37899999999996432211000 00111111223345678999999999999998
Q ss_pred EEEcC-----CCHHHHHHHHHHCC
Q psy2395 530 IEHGY-----NQSNLVRKLLFKYG 548 (570)
Q Consensus 530 ~~~~~-----~~~~~l~~ll~~~G 548 (570)
+++|. .....+++.+.+.+
T Consensus 241 ~I~p~~~l~~~~~~~lR~~L~~~~ 264 (328)
T d2f8la1 241 FLVPDAMFGTSDFAKVDKFIKKNG 264 (328)
T ss_dssp EEEEGGGGGSTTHHHHHHHHHHHE
T ss_pred EEecCccccCchhHHHHHHHHhCC
Confidence 88864 34677888777654
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.54 E-value=2e-14 Score=134.59 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=73.0
Q ss_pred CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE
Q psy2395 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK 454 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~ 454 (570)
.+.+|.+.+..++..+.....-.+.+|||+|||||.+++.++..+ ..+|+|+|+|+.+++.|++|+. ++.
T Consensus 26 Qy~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~~--------~~~ 95 (197)
T d1ne2a_ 26 QYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG--------GVN 95 (197)
T ss_dssp -CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT--------TSE
T ss_pred cCCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHccc--------ccc
Confidence 445676777766655544322357899999999999999988776 3689999999999999999875 278
Q ss_pred EEEcccccccccCCCceeEEEECCCCCC
Q psy2395 455 FIKSNWYNNLQNYKKLFNIIVANPPYIP 482 (570)
Q Consensus 455 ~~~~D~~~~l~~~~~~fD~Iv~NPPy~~ 482 (570)
|+++|+.+ + +++||+||+||||..
T Consensus 96 ~~~~D~~~-l---~~~fD~Vi~NPPfg~ 119 (197)
T d1ne2a_ 96 FMVADVSE-I---SGKYDTWIMNPPFGS 119 (197)
T ss_dssp EEECCGGG-C---CCCEEEEEECCCC--
T ss_pred EEEEehhh-c---CCcceEEEeCcccch
Confidence 99999854 2 378999999999963
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=1.4e-14 Score=138.63 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=101.0
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++.+|||+|||+|.++..++... ..+|+|||+|+.|++.|++++...+ ..+++|+++|+.+ ++...++||+|+
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~---~~~~~f~~~d~~~-~~~~~~~fD~I~ 132 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG---KRVRNYFCCGLQD-FTPEPDSYDVIW 132 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG---GGEEEEEECCGGG-CCCCSSCEEEEE
T ss_pred CCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccc---ccccccccccccc-cccccccccccc
Confidence 356799999999999999887554 3589999999999999999987632 2358999999976 344458999999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc--CC-------------CHHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG--YN-------------QSNLV 540 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~--~~-------------~~~~l 540 (570)
++-.+...+ ......++..+.+.|+|||.+++..+ .. ..+.+
T Consensus 133 ~~~~l~h~~-----------------------~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (222)
T d2ex4a1 133 IQWVIGHLT-----------------------DQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVV 189 (222)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHH
T ss_pred cccccccch-----------------------hhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHH
Confidence 954322110 12346799999999999999987532 11 35788
Q ss_pred HHHHHHCCCeeEEEEe
Q psy2395 541 RKLLFKYGFSDIKSWR 556 (570)
Q Consensus 541 ~~ll~~~Gf~~i~~~~ 556 (570)
.+++.++||.+++...
T Consensus 190 ~~l~~~aGf~ii~~~~ 205 (222)
T d2ex4a1 190 RRIICSAGLSLLAEER 205 (222)
T ss_dssp HHHHHHTTCCEEEEEE
T ss_pred HHHHHHcCCEEEEEEE
Confidence 9999999999987664
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.52 E-value=4.9e-14 Score=140.48 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=106.9
Q ss_pred ccCeeeeecCC------ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Q psy2395 365 FYGLVLNITSD------VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIA 438 (570)
Q Consensus 365 f~~~~~~v~~~------~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A 438 (570)
+.|++|.+++. .|.-...++..+...+.. ..++.+|||++||||.+++.++..+ ++|++||+|+.+++.|
T Consensus 95 e~gl~f~v~~~~~~~tG~f~dqr~nr~~~~~~~~~-~~~~~rVLdlf~~tG~~sl~aa~~G---A~V~~VD~s~~al~~a 170 (309)
T d2igta1 95 LLGVEFLGRFTAFRHVGVFPEQIVHWEWLKNAVET-ADRPLKVLNLFGYTGVASLVAAAAG---AEVTHVDASKKAIGWA 170 (309)
T ss_dssp ETTEEEEEECCSSSCCSCCGGGHHHHHHHHHHHHH-SSSCCEEEEETCTTCHHHHHHHHTT---CEEEEECSCHHHHHHH
T ss_pred EeEEEEEEeccCCCccccccchhHHHHHHHHHHhh-ccCCCeEEEecCCCcHHHHHHHhCC---CeEEEEeChHHHHHHH
Confidence 34666666643 332223444443333332 2457799999999999999998654 6899999999999999
Q ss_pred HHHHHhhcccCCCCEEEEEccccccccc---CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCC-hHHHHHH
Q psy2395 439 KKNAKKKLTKYNIPIKFIKSNWYNNLQN---YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG-LSSIKEI 514 (570)
Q Consensus 439 ~~n~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g-l~~~~~~ 514 (570)
++|+..|+. ...+++|+++|+++.+.. ...+||+||+|||.+....... ... .+.+..+
T Consensus 171 ~~N~~ln~~-~~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~----------------~~~~~~~~~~l 233 (309)
T d2igta1 171 KENQVLAGL-EQAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGE----------------VWQLFDHLPLM 233 (309)
T ss_dssp HHHHHHHTC-TTSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCC----------------EEEHHHHHHHH
T ss_pred HHhhhhhcc-cCCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccch----------------hHHHHHHHHHH
Confidence 999998753 223699999999876542 2368999999999763221100 001 1344667
Q ss_pred HHHHhhccccCeEEEEEEcC---CCHHHHHHHHH
Q psy2395 515 VKNASKYLVKNGLLLIEHGY---NQSNLVRKLLF 545 (570)
Q Consensus 515 l~~~~~~LkpgG~l~~~~~~---~~~~~l~~ll~ 545 (570)
+..+..+|+|||.+++.+.. .....+.+++.
T Consensus 234 ~~~~~~ll~~~g~~ll~t~~s~~~s~~~~~~~~~ 267 (309)
T d2igta1 234 LDICREILSPKALGLVLTAYSIRASFYSMHELMR 267 (309)
T ss_dssp HHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 78889999999976664432 23444445444
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.52 E-value=6e-14 Score=131.79 Aligned_cols=127 Identities=13% Similarity=0.135 Sum_probs=94.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.+|||+|||+|..+..+++++ .+|+|+|+|+.|++.|++++...+ -.++.+..+|+.+... +++||+|++
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g---~~v~gvD~s~~~l~~a~~~~~~~~---~~~~~~~~~d~~~~~~--~~~fD~I~~ 101 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANG---YDVTAWDKNPASMANLERIKAAEG---LDNLQTDLVDLNTLTF--DGEYDFILS 101 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT---CTTEEEEECCTTTCCC--CCCEEEEEE
T ss_pred CCCcEEEECCCCCHHHHHHHHHh---hhhccccCcHHHHHHHHHHhhhcc---ccchhhhheecccccc--cccccEEEE
Confidence 45699999999999999999765 689999999999999999988632 2358999999866433 478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC--------------CHHHHHH
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN--------------QSNLVRK 542 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------~~~~l~~ 542 (570)
+..+...+. .....+++.+.+.|+|||.+++..... ...++.+
T Consensus 102 ~~~~~~~~~-----------------------~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~~ 158 (198)
T d2i6ga1 102 TVVMMFLEA-----------------------QTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRR 158 (198)
T ss_dssp ESCGGGSCT-----------------------THHHHHHHHHHHTEEEEEEEEEEEEBC---------CCCCBCTTHHHH
T ss_pred eeeeecCCH-----------------------HHHHHHHHHHHHHcCCCcEEEEEEecCCccCCCCCCCCCccCHHHHHH
Confidence 765542110 134789999999999999988753211 1234555
Q ss_pred HHHHCCCeeEEEEe
Q psy2395 543 LLFKYGFSDIKSWR 556 (570)
Q Consensus 543 ll~~~Gf~~i~~~~ 556 (570)
++ .||..+....
T Consensus 159 ~~--~~~~i~~~~e 170 (198)
T d2i6ga1 159 YY--EGWDMLKYNE 170 (198)
T ss_dssp HT--TTSEEEEEEE
T ss_pred Hh--CCCeEEEeee
Confidence 55 4777765443
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.51 E-value=1.2e-13 Score=131.20 Aligned_cols=155 Identities=18% Similarity=0.208 Sum_probs=112.0
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+.++.++..++|+.|++.....+.+ .+..+.++.+.++..|.....+-.++.
T Consensus 24 ~~v~~A~~~VpRe~Fvp~~~~~~AY----------------------------~D~~l~i~~g~~is~P~~~a~ml~~L~ 75 (215)
T d1jg1a_ 24 KEVERAFLKYPRYLSVEDKYKKYAH----------------------------IDEPLPIPAGQTVSAPHMVAIMLEIAN 75 (215)
T ss_dssp HHHHHHHHHSCGGGGSCGGGGGGTT----------------------------SSSCEECSTTCEECCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCchhcCCHHHhhccc----------------------------ccCCcccchhhhhhhhhhHHHHHHhhc
Confidence 3477888999999998755444332 233334456666777765433322322
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
..++.+|||+|||||+.+..+++.. +.+|+++|+++.+++.|++|+...+ -.++.++++|..+..+. ..+||
T Consensus 76 --l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g---~~nv~~~~gd~~~g~~~-~~pfD 147 (215)
T d1jg1a_ 76 --LKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAG---VKNVHVILGDGSKGFPP-KAPYD 147 (215)
T ss_dssp --CCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTT---CCSEEEEESCGGGCCGG-GCCEE
T ss_pred --cCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcC---CceeEEEECccccCCcc-cCcce
Confidence 4678899999999999999999876 3579999999999999999999742 34799999999886654 47899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
.|+++..... -| ..+ .+.|+|||++++.++.
T Consensus 148 ~Iiv~~a~~~-------------ip--------------~~l----~~qL~~gGrLv~pv~~ 178 (215)
T d1jg1a_ 148 VIIVTAGAPK-------------IP--------------EPL----IEQLKIGGKLIIPVGS 178 (215)
T ss_dssp EEEECSBBSS-------------CC--------------HHH----HHTEEEEEEEEEEECS
T ss_pred eEEeeccccc-------------CC--------------HHH----HHhcCCCCEEEEEEcc
Confidence 9999632211 01 233 3479999999987764
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.50 E-value=9.2e-14 Score=135.92 Aligned_cols=130 Identities=17% Similarity=0.137 Sum_probs=99.6
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.+..+|||+|||+|.++..++..+. .+|+|||+|+.|++.|++++.. ...++|+++|+.+ ++..+++||+|+
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~-----~~~~~~~~~d~~~-~~~~~~~fD~I~ 163 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG-----MPVGKFILASMET-ATLPPNTYDLIV 163 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT-----SSEEEEEESCGGG-CCCCSSCEEEEE
T ss_pred CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc-----cccceeEEccccc-cccCCCccceEE
Confidence 4667999999999999998886653 5899999999999999988752 3358999999965 343457899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC----------------CCHHH
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY----------------NQSNL 539 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~----------------~~~~~ 539 (570)
+...+.... -.....+++.+.+.|+|||.+++.... ...+.
T Consensus 164 ~~~vl~hl~-----------------------d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~ 220 (254)
T d1xtpa_ 164 IQWTAIYLT-----------------------DADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIH 220 (254)
T ss_dssp EESCGGGSC-----------------------HHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHH
T ss_pred eeccccccc-----------------------hhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHH
Confidence 965432111 123468899999999999999874321 12467
Q ss_pred HHHHHHHCCCeeEEEEe
Q psy2395 540 VRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 540 l~~ll~~~Gf~~i~~~~ 556 (570)
+.++++++||++++...
T Consensus 221 ~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 221 YKRLFNESGVRVVKEAF 237 (254)
T ss_dssp HHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHcCCEEEEEEe
Confidence 89999999999987654
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.50 E-value=7.7e-14 Score=136.13 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=87.7
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeE
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..+++.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.|++++... ....++.|.++|+........++||+
T Consensus 21 ~~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~--~~~~~v~f~~~D~~~~~~~~~~~fD~ 96 (252)
T d1ri5a_ 21 YTKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNM--KRRFKVFFRAQDSYGRHMDLGKEFDV 96 (252)
T ss_dssp HCCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTS--CCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred hCCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhc--CCCcceEEEEcchhhhcccccccceE
Confidence 34678899999999999999998775 368999999999999999988753 12346999999996543333578999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
|+|+--.+ ......+....++..+.++|+|||++++.++
T Consensus 97 V~~~~~l~---------------------~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 97 ISSQFSFH---------------------YAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp EEEESCGG---------------------GGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred EEEcceee---------------------ecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 99953211 0011224567899999999999999988654
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.50 E-value=9.5e-14 Score=132.78 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=108.4
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+-++.++..++|+.|++.....+++.+. +..+.+.++..++.|.....+-..+
T Consensus 14 ~~v~~A~~~VpRe~Fvp~~~~~~AY~d~--------------------------~~~l~i~~g~~~~~p~~~a~ml~~L- 66 (224)
T d1vbfa_ 14 QELAEAFNKVDRSLFLPENLKDYAYAHT--------------------------HEALPILPGINTTALNLGIFMLDEL- 66 (224)
T ss_dssp HHHHHHHHHSCHHHHSCGGGGGGSSSST--------------------------TCCEEEETTEEECCHHHHHHHHHHT-
T ss_pred HHHHHHHHcCcHHHcCChhhhhcCccCc--------------------------ccCcccCCCCceehhhhHHHHHHHh-
Confidence 4577889999999998754443332211 1122334566666665443322222
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCcee
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFN 472 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD 472 (570)
..+++.+|||+|||||+++..||+.. .+|+++|+++.+++.|++|+.. ..++.++.+|.....+. .++||
T Consensus 67 -~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~-----~~nv~~~~~d~~~g~~~-~~pfD 136 (224)
T d1vbfa_ 67 -DLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY-----YNNIKLILGDGTLGYEE-EKPYD 136 (224)
T ss_dssp -TCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT-----CSSEEEEESCGGGCCGG-GCCEE
T ss_pred -hhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc-----ccccccccCchhhcchh-hhhHH
Confidence 24678899999999999999999875 5899999999999999998764 34799999999776554 47899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
+|+++..... ... .+.+.|+|||++++.++..
T Consensus 137 ~Iiv~~a~~~---------------------------ip~----~l~~qLk~GGrLV~pvg~~ 168 (224)
T d1vbfa_ 137 RVVVWATAPT---------------------------LLC----KPYEQLKEGGIMILPIGVG 168 (224)
T ss_dssp EEEESSBBSS---------------------------CCH----HHHHTEEEEEEEEEEECSS
T ss_pred HHHhhcchhh---------------------------hhH----HHHHhcCCCCEEEEEEcCC
Confidence 9999632110 012 2345899999999877654
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2.8e-13 Score=129.87 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=108.7
Q ss_pred hhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHhh
Q psy2395 314 ILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVKK 393 (570)
Q Consensus 314 ~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~ 393 (570)
.++.++..++|+.|+... .|.+..+.++.+.++..|.....+-.++..
T Consensus 25 ~v~~a~~~vpRe~Fvp~~--------------------------------aY~D~~l~i~~~~~is~P~~~a~~le~L~~ 72 (224)
T d1i1na_ 25 KVFEVMLATDRSHYAKCN--------------------------------PYMDSPQSIGFQATISAPHMHAYALELLFD 72 (224)
T ss_dssp HHHHHHHTSCGGGTCSSC--------------------------------TTSSSCEEEETTEEECCHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCHHHcCCcc--------------------------------cCCCCCccccchhhhhhhHHHHHHHHHHhh
Confidence 477888889999887420 122333344555566666443322222222
Q ss_pred cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhccc--CCCCEEEEEcccccccccCCCce
Q psy2395 394 TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTK--YNIPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 394 ~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~--~~~~v~~~~~D~~~~l~~~~~~f 471 (570)
..+++.+|||+|||||+.+..+|+...+..+|+|+|+++++++.|++|+.+.+.. ...++.+..+|+....+. ..+|
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~-~~~f 151 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE-EAPY 151 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG-GCCE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch-hhhh
Confidence 2367889999999999999999987655679999999999999999999864321 123689999999775543 4689
Q ss_pred eEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC
Q psy2395 472 NIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN 535 (570)
Q Consensus 472 D~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~ 535 (570)
|+|+++..... +...+.+.|||||++++.++..
T Consensus 152 D~I~~~~~~~~-------------------------------ip~~l~~~LkpGG~LV~pv~~~ 184 (224)
T d1i1na_ 152 DAIHVGAAAPV-------------------------------VPQALIDQLKPGGRLILPVGPA 184 (224)
T ss_dssp EEEEECSBBSS-------------------------------CCHHHHHTEEEEEEEEEEESCT
T ss_pred hhhhhhcchhh-------------------------------cCHHHHhhcCCCcEEEEEEccC
Confidence 99999642210 1123456899999999877643
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=2e-13 Score=137.54 Aligned_cols=133 Identities=17% Similarity=0.134 Sum_probs=100.8
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc--------cCCCCEEEEEccccccccc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT--------KYNIPIKFIKSNWYNNLQN 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~--------~~~~~v~~~~~D~~~~l~~ 466 (570)
..++.+|||+|||+|++++.||+...+.++|+++|+++++++.|++|++..+. ....++.+.++|+.+....
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 46899999999999999999998865578999999999999999999986421 1234799999998654322
Q ss_pred -CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHH
Q psy2395 467 -YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLL 544 (570)
Q Consensus 467 -~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll 544 (570)
....||.|+.|.|- | ..++..+.+.|||||++++.+|. .|...+.+.|
T Consensus 176 ~~~~~fD~V~LD~p~----------------P--------------~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l 225 (324)
T d2b25a1 176 IKSLTFDAVALDMLN----------------P--------------HVTLPVFYPHLKHGGVCAVYVVNITQVIELLDGI 225 (324)
T ss_dssp -----EEEEEECSSS----------------T--------------TTTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCCCcceEeecCcC----------------H--------------HHHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHH
Confidence 23689999998652 1 13467889999999999887764 6777777777
Q ss_pred HH--CCCeeEEEEec
Q psy2395 545 FK--YGFSDIKSWRD 557 (570)
Q Consensus 545 ~~--~Gf~~i~~~~D 557 (570)
+. .||..++++.-
T Consensus 226 ~~~~~~f~~i~~~E~ 240 (324)
T d2b25a1 226 RTCELALSCEKISEV 240 (324)
T ss_dssp HHHTCCEEEEEEECC
T ss_pred HHcCCCceeeEEEEE
Confidence 75 46888776643
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.47 E-value=1.5e-13 Score=131.80 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=92.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++.. .++.++++|+.+.. ++++||+|++
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~~g---~~v~giD~s~~~i~~a~~~~~-------~~~~~~~~~~~~~~--~~~~fD~I~~ 87 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLK-------DGITYIHSRFEDAQ--LPRRYDNIVL 87 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGCC--CSSCEEEEEE
T ss_pred CCCcEEEEeCCCcHHHHHHHHcC---CeEEEEeCcHHHhhhhhcccc-------cccccccccccccc--cccccccccc
Confidence 46689999999999999998654 579999999999999987643 35899999986533 2478999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh-hccccCeEEEEEEcCC--------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS-KYLVKNGLLLIEHGYN-------------------- 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~-~~LkpgG~l~~~~~~~-------------------- 535 (570)
.-.+. | +.....++.++. ++|+|||.+++.++..
T Consensus 88 ~~vle-------------h------------~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~ 142 (225)
T d2p7ia1 88 THVLE-------------H------------IDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAV 142 (225)
T ss_dssp ESCGG-------------G------------CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCC
T ss_pred cceeE-------------e------------cCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhc
Confidence 43211 1 112356777776 7899999999987531
Q ss_pred -------------CHHHHHHHHHHCCCeeEEE
Q psy2395 536 -------------QSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 536 -------------~~~~l~~ll~~~Gf~~i~~ 554 (570)
..+.+..++.++||+++..
T Consensus 143 ~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~ 174 (225)
T d2p7ia1 143 TEAEFAHGHRCTYALDTLERDASRAGLQVTYR 174 (225)
T ss_dssp CHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred CccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence 1457889999999998764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.46 E-value=1.3e-13 Score=128.21 Aligned_cols=121 Identities=7% Similarity=-0.030 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc---------cCCCCEEEE
Q psy2395 386 LVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT---------KYNIPIKFI 456 (570)
Q Consensus 386 l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~---------~~~~~v~~~ 456 (570)
+.+.+.....+++.+|||+|||+|..++.||+++ .+|+|+|+|+.|++.|++++..... .....+.|+
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G---~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQG---YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHC---CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcC---CceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 3333434445678899999999999999999874 7999999999999999999864211 012346788
Q ss_pred EcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 457 KSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 457 ~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
++|+.+..+.....||+|++.--+.. -..+....+++.+.++|||||.+++..
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~-----------------------l~~~~~~~~~~~i~~~LkpgG~l~l~~ 138 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIA-----------------------LPADMRERYVQHLEALMPQACSGLLIT 138 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGG-----------------------SCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred cccccccccccccceeEEEEEeeeEe-----------------------cchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence 99987644433468999998432211 011345789999999999999987744
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.46 E-value=5.7e-13 Score=131.95 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=88.4
Q ss_pred HHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..++.++..+ .+++.+|||||||+|.++..+++.. +++|+|+|+|+.+++.|++.+...+ ....+.+...|..+
T Consensus 39 ~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~--l~~~~~~~~~d~~~- 113 (280)
T d2fk8a1 39 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASID--TNRSRQVLLQGWED- 113 (280)
T ss_dssp HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEESCGGG-
T ss_pred HHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhc--cccchhhhhhhhhh-
Confidence 3455555543 3678999999999999999999876 4799999999999999999988643 34468888888643
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+++||.|++---+. + -+...+..+++.+.++|||||.+++.
T Consensus 114 ---~~~~fD~i~si~~~e-------------h----------~~~~~~~~~f~~i~~~LkpgG~~~i~ 155 (280)
T d2fk8a1 114 ---FAEPVDRIVSIEAFE-------------H----------FGHENYDDFFKRCFNIMPADGRMTVQ 155 (280)
T ss_dssp ---CCCCCSEEEEESCGG-------------G----------TCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred ---hccchhhhhHhhHHH-------------H----------hhhhhHHHHHHHHHhccCCCceEEEE
Confidence 237899999932111 0 11235688999999999999999884
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.45 E-value=9e-13 Score=124.86 Aligned_cols=133 Identities=16% Similarity=0.102 Sum_probs=97.2
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD 472 (570)
.+++.+|||+|||+|..+..++...+ ..+|+|+|+|+.|++.|+++++. ..++.++.+|+....... ...+|
T Consensus 54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~-----~~ni~~i~~d~~~~~~~~~~~~~vd 127 (209)
T d1nt2a_ 54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRE-----RNNIIPLLFDASKPWKYSGIVEKVD 127 (209)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHH-----CSSEEEECSCTTCGGGTTTTCCCEE
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhc-----cCCceEEEeeccCccccccccceEE
Confidence 36789999999999999999998876 46999999999999999999875 236999999986643221 24688
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc------CCCHHH----HHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG------YNQSNL----VRK 542 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~------~~~~~~----l~~ 542 (570)
+|+++.++. .....++.++.++|||||.+++... ...... ..+
T Consensus 128 ~v~~~~~~~---------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~~~~~~~~~~~ 180 (209)
T d1nt2a_ 128 LIYQDIAQK---------------------------NQIEILKANAEFFLKEKGEVVIMVKARSIDSTAEPEEVFKSVLK 180 (209)
T ss_dssp EEEECCCST---------------------------THHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSCHHHHHHHHHH
T ss_pred EEEecccCh---------------------------hhHHHHHHHHHHHhccCCeEEEEEEccccCCCCCHHHHHHHHHH
Confidence 888875433 1346789999999999999987541 112222 222
Q ss_pred HHHHCCCeeEEEEecCCCCc
Q psy2395 543 LLFKYGFSDIKSWRDLSGIE 562 (570)
Q Consensus 543 ll~~~Gf~~i~~~~D~~g~~ 562 (570)
.+ +.||..++.. ++...+
T Consensus 181 ~l-~~gf~i~E~i-~L~P~~ 198 (209)
T d1nt2a_ 181 EM-EGDFKIVKHG-SLMPYH 198 (209)
T ss_dssp HH-HTTSEEEEEE-ECTTTC
T ss_pred HH-HcCCEEEEEE-ccCCCc
Confidence 23 3699988755 454443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=8.7e-13 Score=126.36 Aligned_cols=143 Identities=15% Similarity=0.105 Sum_probs=104.6
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD 472 (570)
..++.+|||+|||+|.++..+|+...+..+|+|+|+++.+++.|+.+++. ..++..+..|...... .....+|
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-----~~~~~~i~~d~~~~~~~~~~~~~vD 145 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----RRNIVPILGDATKPEEYRALVPKVD 145 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----CTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-----cCCceEEEEECCCcccccccccceE
Confidence 36889999999999999999998865578999999999999999999874 3357788888754332 2236899
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC------CCHHHH---HHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------NQSNLV---RKL 543 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------~~~~~l---~~l 543 (570)
+|+++.|+.. ....++.++.++|||||++++.+.. ...+.+ ...
T Consensus 146 ~i~~d~~~~~---------------------------~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~ 198 (227)
T d1g8aa_ 146 VIFEDVAQPT---------------------------QAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVER 198 (227)
T ss_dssp EEEECCCSTT---------------------------HHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHH
T ss_pred EEEEEccccc---------------------------hHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHH
Confidence 9999876531 3467899999999999999875421 122222 222
Q ss_pred HHHCCCeeEEEEecCCCC---ceEEEEEeC
Q psy2395 544 LFKYGFSDIKSWRDLSGI---ERVTQGKIS 570 (570)
Q Consensus 544 l~~~Gf~~i~~~~D~~g~---~R~~~~~~~ 570 (570)
+.+.||..++... +.+. -.++++++|
T Consensus 199 l~~~gf~iie~i~-L~p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 199 ELSEYFEVIERLN-LEPYEKDHALFVVRKT 227 (227)
T ss_dssp HHHTTSEEEEEEE-CTTTSSSEEEEEEECC
T ss_pred HHHcCCEEEEEEc-CCCCCCceEEEEEEeC
Confidence 3456999887653 4333 366888875
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.44 E-value=1.2e-12 Score=127.74 Aligned_cols=131 Identities=15% Similarity=0.175 Sum_probs=100.5
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
....+|||||||+|.++..+++.+| +.+++++|+ +.+++.|++++...+ ...+++++.+|+++..+ .+||+|+
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~--~~~rv~~~~~D~~~~~~---~~~D~v~ 151 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEG--LSDRVDVVEGDFFEPLP---RKADAII 151 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTT--CTTTEEEEECCTTSCCS---SCEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhh--cccchhhccccchhhcc---cchhhee
Confidence 4567999999999999999999986 689999998 779999999988642 34579999999977443 5799999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC---------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY--------------------- 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~--------------------- 534 (570)
++--++.. .-+....+++++.+.|+|||.+++.-..
T Consensus 152 ~~~vlh~~-----------------------~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~ 208 (253)
T d1tw3a2 152 LSFVLLNW-----------------------PDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVF 208 (253)
T ss_dssp EESCGGGS-----------------------CHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHH
T ss_pred eccccccC-----------------------CchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhh
Confidence 85322110 1123467899999999999998773211
Q ss_pred -----CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 -----NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 -----~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
...+++.++++++||+++++..
T Consensus 209 ~~g~~rt~~e~~~ll~~AGf~~~~v~~ 235 (253)
T d1tw3a2 209 LGGALRTREKWDGLAASAGLVVEEVRQ 235 (253)
T ss_dssp HSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEEE
Confidence 0246678899999999887664
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=99.44 E-value=1.2e-13 Score=131.65 Aligned_cols=166 Identities=17% Similarity=0.209 Sum_probs=113.3
Q ss_pred ccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEE
Q psy2395 376 VLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKF 455 (570)
Q Consensus 376 ~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~ 455 (570)
+++|.+.++.|++.+. ..++.+|||+|||+|.++..+.+..+....++|+|+++.++..+ ....+
T Consensus 1 v~TP~~i~~~m~~l~~---~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~------------~~~~~ 65 (223)
T d2ih2a1 1 VETPPEVVDFMVSLAE---APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEG 65 (223)
T ss_dssp CCCCHHHHHHHHHHCC---CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEE
T ss_pred CCCCHHHHHHHHHhcC---CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc------------cccee
Confidence 5789888888888652 35678999999999999998887666567899999998765332 23578
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCcc-c-c-cc-ccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLR-F-E-PI-NALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~-~-e-p~-~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
+++|.+.... ..+||+|++||||.............. . . +. .......+..+.+..++..+.++|++||+++++
T Consensus 66 ~~~~~~~~~~--~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I 143 (223)
T d2ih2a1 66 ILADFLLWEP--GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFV 143 (223)
T ss_dssp EESCGGGCCC--SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eeeehhcccc--ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEE
Confidence 8898876443 378999999999976543222211111 0 0 00 011122334456788999999999999999988
Q ss_pred EcCC-----CHHHHHHHHHHCCCeeEEEEecC
Q psy2395 532 HGYN-----QSNLVRKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 532 ~~~~-----~~~~l~~ll~~~Gf~~i~~~~D~ 558 (570)
++.. ....+++.+.+.+.-.+....++
T Consensus 144 ~p~~~l~~~~~~~lR~~l~~~~~i~i~~~~~~ 175 (223)
T d2ih2a1 144 VPATWLVLEDFALLREFLAREGKTSVYYLGEV 175 (223)
T ss_dssp EEGGGGTCGGGHHHHHHHHHHSEEEEEEEESC
T ss_pred EeeeeccCcchHHHHHHHHhcCCEEEEcchhc
Confidence 7642 35677777777654344444444
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.44 E-value=2.6e-12 Score=127.65 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=92.3
Q ss_pred HHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
..++.+++.+ .+++.+|||||||.|.+++.+|... +++|+|+++|++.++.|++.+...+ +..++.+...|..
T Consensus 48 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~--l~~~v~~~~~d~~-- 121 (291)
T d1kpia_ 48 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVD--SPRRKEVRIQGWE-- 121 (291)
T ss_dssp HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSC--CSSCEEEEECCGG--
T ss_pred HHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhc--cchhhhhhhhccc--
Confidence 4455555443 3688999999999999999999887 4799999999999999999988643 4456888888863
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
..+++||.|+|.--+-.. + -..+..|...++.+++.+.++|||||.+++
T Consensus 122 --~~~~~fD~i~sie~~eH~-------------~---~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l 170 (291)
T d1kpia_ 122 --EFDEPVDRIVSLGAFEHF-------------A---DGAGDAGFERYDTFFKKFYNLTPDDGRMLL 170 (291)
T ss_dssp --GCCCCCSEEEEESCGGGT-------------T---CCSSCCSTTHHHHHHHHHHHTSCTTCEEEE
T ss_pred --ccccccceEeechhHHhc-------------c---hhhhhhHHHHHHHHHHHHHHhCCCCCceEE
Confidence 234789999994221100 0 001123567889999999999999999987
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=2.4e-13 Score=128.21 Aligned_cols=118 Identities=22% Similarity=0.289 Sum_probs=90.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.++..++ +++|||+|+.+++.|+++ ++.++++|+.+ ++..+++||+|++
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~-l~~~~~~fD~I~~ 97 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR----------GVFVLKGTAEN-LPLKDESFDFALM 97 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT----------TCEEEECBTTB-CCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc----------ccccccccccc-ccccccccccccc
Confidence 45689999999999877664 368999999999998753 27899999955 4555689999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC---------------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN--------------------- 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------------- 535 (570)
+--.. |- .....+++++.++|+|||.+++..+..
T Consensus 98 ~~~l~-------------h~------------~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (208)
T d1vlma_ 98 VTTIC-------------FV------------DDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNA 152 (208)
T ss_dssp ESCGG-------------GS------------SCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTC
T ss_pred ccccc-------------cc------------cccccchhhhhhcCCCCceEEEEecCCcchhHHhhhhccccccccccc
Confidence 53211 11 123678999999999999998865431
Q ss_pred ---CHHHHHHHHHHCCCeeEEEEec
Q psy2395 536 ---QSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 536 ---~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
...++.++|+++||+.+++..-
T Consensus 153 ~~~s~~~l~~~l~~~Gf~~i~v~~~ 177 (208)
T d1vlma_ 153 RFFSTEELMDLMRKAGFEEFKVVQT 177 (208)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred cCCCHHHHHHHHHHcCCeEEEEEEE
Confidence 1467899999999999887753
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=3.8e-13 Score=124.83 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=98.3
Q ss_pred cccCeeeeecCCccccchhHHHHHHHHHhhcC--CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 364 EFYGLVLNITSDVLIPRPETELLVDLIVKKTF--EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 364 ~f~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~--~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.|.|..+...++. ..||.+..+-+.+...+. -.+.+|||++||||.+++.++.++ ..+|+.||.|+.+++..++|
T Consensus 9 ~~kg~~l~~~~~~-~~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~N 85 (183)
T d2ifta1 9 LWRGRKLPVLNSE-GLRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKN 85 (183)
T ss_dssp TTTTCEEECC----------CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHH
T ss_pred ccCCCEecCCCCC-CcCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhH
Confidence 4556676655443 357777766666555432 256799999999999999999887 46999999999999999999
Q ss_pred HHhhcccCCCCEEEEEcccccccccC--CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 442 AKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 442 ~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
++..+. ......+...|+.+.+... ..+||+|++||||... .+..++..+.
T Consensus 86 i~~l~~-~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDPPY~~~--------------------------~~~~~l~~l~ 138 (183)
T d2ifta1 86 LQTLKC-SSEQAEVINQSSLDFLKQPQNQPHFDVVFLDPPFHFN--------------------------LAEQAISLLC 138 (183)
T ss_dssp HHHTTC-CTTTEEEECSCHHHHTTSCCSSCCEEEEEECCCSSSC--------------------------HHHHHHHHHH
T ss_pred Hhhhcc-cccccccccccccccccccccCCcccEEEechhHhhh--------------------------hHHHHHHHHH
Confidence 987421 1234778888876654322 3579999999999631 3345555543
Q ss_pred --hccccCeEEEEEEcCC
Q psy2395 520 --KYLVKNGLLLIEHGYN 535 (570)
Q Consensus 520 --~~LkpgG~l~~~~~~~ 535 (570)
..|+++|+++++++..
T Consensus 139 ~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 139 ENNWLKPNALIYVETEKD 156 (183)
T ss_dssp HTTCEEEEEEEEEEEESS
T ss_pred HhCCcCCCcEEEEEecCC
Confidence 4799999999998654
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.42 E-value=2.7e-12 Score=127.18 Aligned_cols=115 Identities=17% Similarity=0.269 Sum_probs=88.7
Q ss_pred HHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
.+++.+++.+ ..++.+|||||||.|.+++.+|+.. +++|+|+++|+..++.|++.+...+ +..++++..+|+.+
T Consensus 49 ~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g--~~~~v~~~~~d~~~- 123 (285)
T d1kpga_ 49 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSE--NLRSKRVLLAGWEQ- 123 (285)
T ss_dssp HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCC--CCSCEEEEESCGGG-
T ss_pred HHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhh--hhhhhHHHHhhhhc-
Confidence 4445555443 3688999999999999999999887 5899999999999999999987643 45579999999843
Q ss_pred cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 464 LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 464 l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+ +++||.|++---+- | -|...+..+++.+.++|+|||.+++
T Consensus 124 ~---~~~fD~i~si~~~e-------------h----------~~~~~~~~~~~~~~r~LkpgG~~~l 164 (285)
T d1kpga_ 124 F---DEPVDRIVSIGAFE-------------H----------FGHERYDAFFSLAHRLLPADGVMLL 164 (285)
T ss_dssp C---CCCCSEEEEESCGG-------------G----------TCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred c---cccccceeeehhhh-------------h----------cCchhHHHHHHHHHhhcCCCCcEEE
Confidence 2 36899999921110 0 1123457899999999999999987
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=1.4e-13 Score=132.60 Aligned_cols=109 Identities=17% Similarity=0.319 Sum_probs=81.0
Q ss_pred HHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCC
Q psy2395 389 LIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYK 468 (570)
Q Consensus 389 ~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~ 468 (570)
.++....+++.+|||+|||+|.++..+++. +++|+|+|+|+.|++.|+++... .++.+|+.+ ++.++
T Consensus 34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~~~---------~~~~~~~~~-l~~~~ 100 (246)
T d2avna1 34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGVK---------NVVEAKAED-LPFPS 100 (246)
T ss_dssp HHHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTCS---------CEEECCTTS-CCSCT
T ss_pred HHHHHhcCCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccccc---------ccccccccc-ccccc
Confidence 333333456789999999999999999965 46999999999999999986431 267788855 55556
Q ss_pred CceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 469 KLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 469 ~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
++||+|++.-..+ .| +.....+++++.++|||||.+++.++.
T Consensus 101 ~~fD~ii~~~~~~------------~~------------~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 101 GAFEAVLALGDVL------------SY------------VENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp TCEEEEEECSSHH------------HH------------CSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccccceeeecchh------------hh------------hhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 8999999842110 00 012367889999999999999987754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.5e-13 Score=129.46 Aligned_cols=129 Identities=10% Similarity=-0.005 Sum_probs=94.8
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc--------------ccCCCCEEEEEcccc
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL--------------TKYNIPIKFIKSNWY 461 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~--------------~~~~~~v~~~~~D~~ 461 (570)
+++.+|||+|||+|..+..||+.+ .+|+|||+|+.|++.|+++..... .....+++++++|++
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~~G---~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFADRG---HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHHTT---CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHhCC---CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 467899999999999999999764 799999999999999998765311 012346999999998
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-------
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY------- 534 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~------- 534 (570)
+..+...+.||+|+..--++.. ..+....+++.+.++|+|||.+++.+..
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~-----------------------~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~ 177 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAI-----------------------NPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP 177 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTS-----------------------CGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC
T ss_pred hccccccCceeEEEEEEEEEec-----------------------cchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC
Confidence 7655556799999984333211 1123478889999999999998775421
Q ss_pred -----CCHHHHHHHHHHCCCee
Q psy2395 535 -----NQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 535 -----~~~~~l~~ll~~~Gf~~ 551 (570)
-..+++.+++.. +|.+
T Consensus 178 gpp~~~~~~el~~lf~~-~~~i 198 (229)
T d2bzga1 178 GPPFYVPHAEIERLFGK-ICNI 198 (229)
T ss_dssp CSSCCCCHHHHHHHHTT-TEEE
T ss_pred CCCCCCCHHHHHHHhcC-CCEE
Confidence 135667888854 5654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=1.1e-12 Score=124.81 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=82.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 474 (570)
.+++.+|||+|||||+++..+|+...+..+|+++|+++.+++.|++|+... .-.++.++++|..+..+. .++||+|
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~---~~~n~~~~~~d~~~~~~~-~~~fD~I 148 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---GIENVIFVCGDGYYGVPE-FSPYDVI 148 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCGG-GCCEEEE
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh---cccccccccCchHHcccc-ccchhhh
Confidence 468899999999999999999987755789999999999999999999874 234689999998775543 4689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
+++...... | . .+.+.|||||++++.++.
T Consensus 149 ~~~~~~~~~-------------p--------------~----~l~~~LkpGG~lv~pv~~ 177 (213)
T d1dl5a1 149 FVTVGVDEV-------------P--------------E----TWFTQLKEGGRVIVPINL 177 (213)
T ss_dssp EECSBBSCC-------------C--------------H----HHHHHEEEEEEEEEEBCB
T ss_pred hhhccHHHh-------------H--------------H----HHHHhcCCCcEEEEEECc
Confidence 997432110 0 2 234579999999886653
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=5.5e-13 Score=131.32 Aligned_cols=119 Identities=18% Similarity=0.205 Sum_probs=90.5
Q ss_pred hHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 382 ~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
....++..+......++.+|||+|||+|.++..++..++ +.+++|+|+|+.|++.|+++.. ++.|.++|+.
T Consensus 69 l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~~--------~~~~~~~d~~ 139 (268)
T d1p91a_ 69 LRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRYP--------QVTFCVASSH 139 (268)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHCT--------TSEEEECCTT
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhcccc--------cccceeeehh
Confidence 345566666666667788999999999999999998876 6899999999999999986532 4889999995
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHH
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLV 540 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l 540 (570)
+ ++..+++||+|+++.. |+ .++++.++|||||++++.++. +...++
T Consensus 140 ~-l~~~~~sfD~v~~~~~-----------------~~---------------~~~e~~rvLkpgG~l~~~~p~~~~l~el 186 (268)
T d1p91a_ 140 R-LPFSDTSMDAIIRIYA-----------------PC---------------KAEELARVVKPGGWVITATPGPRHLMEL 186 (268)
T ss_dssp S-CSBCTTCEEEEEEESC-----------------CC---------------CHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred h-ccCCCCCEEEEeecCC-----------------HH---------------HHHHHHHHhCCCcEEEEEeeCCcchHHH
Confidence 5 5555689999998421 10 134678899999999998764 444444
Q ss_pred HH
Q psy2395 541 RK 542 (570)
Q Consensus 541 ~~ 542 (570)
..
T Consensus 187 ~~ 188 (268)
T d1p91a_ 187 KG 188 (268)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.39 E-value=2.2e-12 Score=121.51 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=99.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cCCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~~~~fD~Iv 475 (570)
+...|||||||+|..++.+|+..| +..++|+|+++.++..|.+++..++ -.++.++++|+..... ..++++|.|+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~---l~Nv~~~~~Da~~l~~~~~~~~~d~v~ 104 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSE---AQNVKLLNIDADTLTDVFEPGEVKRVY 104 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSC---CSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHh---ccCchhcccchhhhhcccCchhhhccc
Confidence 345899999999999999999987 6899999999999999999998742 2369999999865432 2347899988
Q ss_pred ECC--CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC-CCHHHHHHHHHHCCCeeE
Q psy2395 476 ANP--PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY-NQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 476 ~NP--Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~l~~ll~~~Gf~~i 552 (570)
++- ||.... +..+ .+ ....+++.+.+.|||||.|++.+.. ...+.+.+.+.+.++...
T Consensus 105 i~fp~P~~k~~----------h~k~-Rl--------~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~~~~ 165 (204)
T d2fcaa1 105 LNFSDPWPKKR----------HEKR-RL--------TYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGLLLT 165 (204)
T ss_dssp EESCCCCCSGG----------GGGG-ST--------TSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTCEEE
T ss_pred cccccccchhh----------hcch-hh--------hHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCCccc
Confidence 863 332111 0000 00 1257899999999999999887643 224556677777777654
Q ss_pred EEEec
Q psy2395 553 KSWRD 557 (570)
Q Consensus 553 ~~~~D 557 (570)
....|
T Consensus 166 ~~~~d 170 (204)
T d2fcaa1 166 YVSLD 170 (204)
T ss_dssp EEESS
T ss_pred cCChh
Confidence 44333
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=7e-13 Score=127.46 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=97.0
Q ss_pred HHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc-cC
Q psy2395 389 LIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ-NY 467 (570)
Q Consensus 389 ~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~-~~ 467 (570)
.+......++.+|||||||+|..+..+++.. ..+|+|||+|+.+++.|++++.. ...++.++.+|+..... ..
T Consensus 45 ~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~~ 118 (229)
T d1zx0a1 45 ALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPR----QTHKVIPLKGLWEDVAPTLP 118 (229)
T ss_dssp HHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGG----CSSEEEEEESCHHHHGGGSC
T ss_pred HHHHhhccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhh----cccccccccccccccccccc
Confidence 3333334567899999999999999999764 36899999999999999999875 45568888888754332 23
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc----------CCC-
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG----------YNQ- 536 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~----------~~~- 536 (570)
.++||.|+.++...... .........+++++.++|||||+|++... ...
T Consensus 119 ~~~fD~i~fD~~~~~~~--------------------~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~~~~~~~~~~~ 178 (229)
T d1zx0a1 119 DGHFDGILYDTYPLSEE--------------------TWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMKSKYSDI 178 (229)
T ss_dssp TTCEEEEEECCCCCBGG--------------------GTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHHHHTTTTCSCH
T ss_pred cccccceeecccccccc--------------------cccccCHHHHHHHHHHHcCCCcEEEEEecCCcchhhhhhhhhc
Confidence 47999999976422110 01223557899999999999999876321 111
Q ss_pred ----HHHHHHHHHHCCCee
Q psy2395 537 ----SNLVRKLLFKYGFSD 551 (570)
Q Consensus 537 ----~~~l~~ll~~~Gf~~ 551 (570)
.......+.++||+.
T Consensus 179 ~~~~~~~~~~~l~~agF~~ 197 (229)
T d1zx0a1 179 TIMFEETQVPALLEAGFRR 197 (229)
T ss_dssp HHHHHHHTHHHHHHTTCCG
T ss_pred chhhhhHHHHHHHHCCCee
Confidence 234455677889975
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.39 E-value=4.2e-12 Score=119.61 Aligned_cols=141 Identities=19% Similarity=0.163 Sum_probs=101.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-CCCceeEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-YKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~~~~fD~Iv 475 (570)
....|||||||+|..++.+|+..| ...++|+|+++.++..|.+++..++ -.++.++.+|+.+.... ...++|.|+
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~---l~Ni~~~~~da~~l~~~~~~~~~~~i~ 106 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVG---VPNIKLLWVDGSDLTDYFEDGEIDRLY 106 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHC---CSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhc---cccceeeecCHHHHhhhccCCceehhc
Confidence 445899999999999999999987 6899999999999999999888752 23699999998664322 247899999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHCCCeeEEE
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKYGFSDIKS 554 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~Gf~~i~~ 554 (570)
++-|--.....+.-.. + ....+++.+.+.|+|||.+++.+... ....+...+...++.....
T Consensus 107 i~fPdPw~K~~h~krR---------l--------~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~~~~~~~ 169 (204)
T d1yzha1 107 LNFSDPWPKKRHEKRR---------L--------TYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYGMKLNGV 169 (204)
T ss_dssp EESCCCCCSGGGGGGS---------T--------TSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHTCEEEEE
T ss_pred ccccccccchhhhhhh---------h--------hHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCCcccccc
Confidence 8744211111100000 0 12678999999999999999876432 2445556666778776656
Q ss_pred EecC
Q psy2395 555 WRDL 558 (570)
Q Consensus 555 ~~D~ 558 (570)
+.+.
T Consensus 170 ~~~~ 173 (204)
T d1yzha1 170 WLDL 173 (204)
T ss_dssp ESSG
T ss_pred cccc
Confidence 6554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.3e-11 Score=126.37 Aligned_cols=197 Identities=14% Similarity=0.187 Sum_probs=136.7
Q ss_pred cceeeechhhhchHHHHHHHHHHHHHHh-------cCCCceeecCcc---cccCeeeeecCCccccc--hhHHHHHHHHH
Q psy2395 324 DVELIINNEKKLHKQEINILNKLIQRRI-------LGEPIAYIIGKK---EFYGLVLNITSDVLIPR--PETELLVDLIV 391 (570)
Q Consensus 324 ~~~~~~~~~~~l~~~~~~~~~~~~~~r~-------~~~p~~~i~g~~---~f~~~~~~v~~~~~~pr--~~t~~l~~~~~ 391 (570)
...+++....+++..+...+..+..... .......+.|.. ++.+..|.++|+.|.+. ..++.|++.+.
T Consensus 126 g~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~i~p~sFfQ~N~~~~e~l~~~v~ 205 (358)
T d1uwva2 126 GTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARAL 205 (358)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEESSSSCCEEEECCCCEEEETTEEEECCSSSCCCSBHHHHHHHHHHHH
T ss_pred CeEEEEEeccccCHHHHHHHHHhhhccceEEEEeecceeEEeecCCceEEecCCEEEEECCchhhccchhhhhHHHHHHH
Confidence 3455566666777777776666654432 122333444432 23578899999999886 56788888888
Q ss_pred hhcC-CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC---
Q psy2395 392 KKTF-EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--- 467 (570)
Q Consensus 392 ~~~~-~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--- 467 (570)
++.. .++.+|||++||+|.+++.||+.+ .+|+|+|+++.+++.|++|+..|+ -.++.|+.+|..+.+...
T Consensus 206 ~~~~~~~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~---i~n~~~~~~~~~~~~~~~~~~ 279 (358)
T d1uwva2 206 EWLDVQPEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNG---LQNVTFYHENLEEDVTKQPWA 279 (358)
T ss_dssp HHHTCCTTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCTTSCCSSSGGG
T ss_pred HhhccCCCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcc---cccceeeecchhhhhhhhhhh
Confidence 7653 456799999999999999999654 699999999999999999999863 236999999987654322
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHC
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKY 547 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~ 547 (570)
..+||+||.|||=- |+. ..+..+.+ ++|.-++|+.+.+.....-...|.+.
T Consensus 280 ~~~~d~vilDPPR~-------------------------G~~---~~~~~l~~-~~~~~ivYVSCnp~TlaRDl~~l~~~ 330 (358)
T d1uwva2 280 KNGFDKVLLDPARA-------------------------GAA---GVMQQIIK-LEPIRIVYVSCNPATLARDSEALLKA 330 (358)
T ss_dssp TTCCSEEEECCCTT-------------------------CCH---HHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHHHT
T ss_pred hccCceEEeCCCCc-------------------------cHH---HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHC
Confidence 36799999999832 221 23333332 46777777776654444344456677
Q ss_pred CCeeEEEE
Q psy2395 548 GFSDIKSW 555 (570)
Q Consensus 548 Gf~~i~~~ 555 (570)
||...++.
T Consensus 331 gy~l~~i~ 338 (358)
T d1uwva2 331 GYTIARLA 338 (358)
T ss_dssp TCEEEEEE
T ss_pred CCeEeEEE
Confidence 99876544
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.4e-12 Score=122.50 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=91.4
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCC------------------------
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNI------------------------ 451 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~------------------------ 451 (570)
.++.+|||+|||+|.+++.++..+ ..+|+|+|+|+.+++.|++++.........
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 127 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence 356799999999999988777554 358999999999999999998753110000
Q ss_pred --CE-EEEEcccccc---cccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC
Q psy2395 452 --PI-KFIKSNWYNN---LQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN 525 (570)
Q Consensus 452 --~v-~~~~~D~~~~---l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg 525 (570)
.+ .....+.... .+...++||+|++.--.. .-....+.+..+++++.++||||
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~---------------------~~~~~~~~~~~~l~~i~~~LkpG 186 (257)
T d2a14a1 128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAME---------------------CACCSLDAYRAALCNLASLLKPG 186 (257)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH---------------------HHCSSHHHHHHHHHHHHTTEEEE
T ss_pred hhhhhcccccccccccccccccCCcccEEeehhhHH---------------------HhcccHHHHHHHHHHHHhccCCC
Confidence 00 1111121111 122246899999842110 00112346678999999999999
Q ss_pred eEEEEEEcC----------------CCHHHHHHHHHHCCCeeEEEE
Q psy2395 526 GLLLIEHGY----------------NQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 526 G~l~~~~~~----------------~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
|.+++.... ...+.+.++|+++||+++++.
T Consensus 187 G~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 187 GHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp EEEEEEEESSCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cEEEEEEecccccceeccccccccCCCHHHHHHHHHHCCCEEEEEE
Confidence 999874321 247889999999999987663
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.33 E-value=5.4e-12 Score=120.45 Aligned_cols=158 Identities=14% Similarity=0.196 Sum_probs=107.3
Q ss_pred hhhhHhhhccCcceeeechhhhchHHHHHHHHHHHHHHhcCCCceeecCcccccCeeeeecCCccccchhHHHHHHHHHh
Q psy2395 313 NILLKYVTRLSDVELIINNEKKLHKQEINILNKLIQRRILGEPIAYIIGKKEFYGLVLNITSDVLIPRPETELLVDLIVK 392 (570)
Q Consensus 313 ~~LL~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~p~~~i~g~~~f~~~~~~v~~~~~~pr~~t~~l~~~~~~ 392 (570)
+.+++++..++|+.|++.. .|.+..+.++.+.++..|.....+-.++.
T Consensus 28 ~~v~~a~~~vpRe~Fvp~~--------------------------------aY~D~~lpi~~~~~is~P~~~a~~l~~L~ 75 (223)
T d1r18a_ 28 DAVAQAMKETDRKHYSPRN--------------------------------PYMDAPQPIGGGVTISAPHMHAFALEYLR 75 (223)
T ss_dssp HHHHHHHHTSCGGGTCSSC--------------------------------TTBSSCEEEETTEEECCHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHcCCcc--------------------------------ccCCCCccccCCceeehhhhHHHHHHHHh
Confidence 4588888999999997521 12333444455666655544332222221
Q ss_pred hcCCCCCEEEEECCcccHHHHHHHHhcC-----CCcEEEEEeCCHHHHHHHHHHHHhhccc--CCCCEEEEEcccccccc
Q psy2395 393 KTFEKKIKLLEMGTGSGAIAIAIAIYSK-----NKIEIIATDISKFALKIAKKNAKKKLTK--YNIPIKFIKSNWYNNLQ 465 (570)
Q Consensus 393 ~~~~~~~~VLDlGcGtG~i~l~la~~~~-----~~~~V~gvDis~~al~~A~~n~~~~~~~--~~~~v~~~~~D~~~~l~ 465 (570)
....++.+|||+|||||+.+..+++... ...+|+++|+++++++.|++|+...... ...++.++++|..+..+
T Consensus 76 ~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~ 155 (223)
T d1r18a_ 76 DHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYP 155 (223)
T ss_dssp TTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCG
T ss_pred hccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccc
Confidence 1235788999999999999999987642 1248999999999999999997653211 12369999999987665
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcC
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGY 534 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~ 534 (570)
. .++||+|+++..... -| . .+.+.|+|||++++.++.
T Consensus 156 ~-~~~fD~Iiv~~a~~~-------------~p--------------~----~l~~~Lk~gG~lV~pvg~ 192 (223)
T d1r18a_ 156 P-NAPYNAIHVGAAAPD-------------TP--------------T----ELINQLASGGRLIVPVGP 192 (223)
T ss_dssp G-GCSEEEEEECSCBSS-------------CC--------------H----HHHHTEEEEEEEEEEESC
T ss_pred c-ccceeeEEEEeechh-------------ch--------------H----HHHHhcCCCcEEEEEEec
Confidence 4 478999999643210 01 2 234589999999987764
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.31 E-value=2.6e-11 Score=118.33 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=100.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
....+|||||||+|.++..+++.+| +.+++++|+ |.+++.|++++...+ ...++.+..+|+++..+ ..||+|+
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~--~~~ri~~~~~d~~~~~p---~~~D~v~ 152 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAG--LADRVTVAEGDFFKPLP---VTADVVL 152 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTT--CTTTEEEEECCTTSCCS---CCEEEEE
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcC--Ccceeeeeeeecccccc---ccchhhh
Confidence 4557999999999999999999987 689999998 889999999988643 44579999999987543 4699999
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc---C------------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG---Y------------------ 534 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~---~------------------ 534 (570)
+.--++.. ..+....+++++.+.|+|||++++.-. .
T Consensus 153 ~~~vLh~~-----------------------~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~ 209 (256)
T d1qzza2 153 LSFVLLNW-----------------------SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLT 209 (256)
T ss_dssp EESCGGGS-----------------------CHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHH
T ss_pred cccccccc-----------------------CcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHh
Confidence 84322110 112346889999999999998876321 1
Q ss_pred ------CCHHHHHHHHHHCCCeeEEEEe
Q psy2395 535 ------NQSNLVRKLLFKYGFSDIKSWR 556 (570)
Q Consensus 535 ------~~~~~l~~ll~~~Gf~~i~~~~ 556 (570)
...+++.++++++||+.+++..
T Consensus 210 ~~~g~~rt~~e~~~ll~~AGf~~~~~~~ 237 (256)
T d1qzza2 210 FMGGRVRTRDEVVDLAGSAGLALASERT 237 (256)
T ss_dssp HHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred hCCCccCCHHHHHHHHHHCCCceeEEEE
Confidence 0236688999999999988765
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=7.2e-12 Score=124.59 Aligned_cols=113 Identities=19% Similarity=0.243 Sum_probs=80.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC-CCCEEEEEcccccccc--cCCCceeE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY-NIPIKFIKSNWYNNLQ--NYKKLFNI 473 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~-~~~v~~~~~D~~~~l~--~~~~~fD~ 473 (570)
++.+|||+|||+|.++..|++.+ .+|+|+|+|+.|++.|+++....+... .....+...|+..... ...++||+
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g---~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ 132 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEG---FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA 132 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcC---CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence 46799999999999999999764 689999999999999999987532110 0134556666643211 12368999
Q ss_pred EEECC---CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 474 IVANP---PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 474 Iv~NP---Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
|++-- .|.+. .....+....+++++.++|||||+|++.+
T Consensus 133 v~~~~~~~~~~~~--------------------~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 174 (292)
T d1xvaa_ 133 VICLGNSFAHLPD--------------------SKGDQSEHRLALKNIASMVRPGGLLVIDH 174 (292)
T ss_dssp EEECSSCGGGSCC--------------------TTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEecCchhhcCC--------------------cccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence 99821 12211 11223566889999999999999999865
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=99.27 E-value=1.4e-11 Score=129.11 Aligned_cols=160 Identities=16% Similarity=0.160 Sum_probs=109.9
Q ss_pred CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC------------CcEEEEEeCCHHHHHHHHHHH
Q psy2395 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN------------KIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~------------~~~V~gvDis~~al~~A~~n~ 442 (570)
.+|+|++....|++.+. +.++.+|+|.+||||.+.+.+.+.... ...++|+|+++.+..+|+.|+
T Consensus 143 ~f~TP~~Iv~~mv~ll~---~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~ 219 (425)
T d2okca1 143 QYFTPRPLIQAMVDCIN---PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL 219 (425)
T ss_dssp GGCCCHHHHHHHHHHHC---CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred hhccchhhhHhhheecc---CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhh
Confidence 36789998888888663 345789999999999999988765421 124999999999999999999
Q ss_pred HhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc
Q psy2395 443 KKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL 522 (570)
Q Consensus 443 ~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L 522 (570)
..++.. .....+..+|.+.... ..+||+|++||||..............+ ..+ .......++..+.+.|
T Consensus 220 ~l~g~~-~~~~~i~~~d~l~~~~--~~~fD~Ii~NPPfg~~~~~~~~~~~~~~------~~~--~~~~~~~Fi~~~~~~L 288 (425)
T d2okca1 220 YLHGIG-TDRSPIVCEDSLEKEP--STLVDVILANPPFGTRPAGSVDINRPDF------YVE--TKNNQLNFLQHMMLML 288 (425)
T ss_dssp HHTTCC-SSCCSEEECCTTTSCC--SSCEEEEEECCCSSCCCTTCCCCCCTTS------SSC--CSCHHHHHHHHHHHHE
T ss_pred hhcCCc-cccceeecCchhhhhc--ccccceEEecCCCCCCccccchhhhhhc------ccc--cccHHHHHHHHHHHhc
Confidence 875421 1235678888876433 3689999999999654322111111111 011 1123456888889999
Q ss_pred ccCeEEEEEEcC-----CC-HHHHHHHHHHCC
Q psy2395 523 VKNGLLLIEHGY-----NQ-SNLVRKLLFKYG 548 (570)
Q Consensus 523 kpgG~l~~~~~~-----~~-~~~l~~ll~~~G 548 (570)
++||.+.+++|. .. ...+++.|.+.+
T Consensus 289 k~~G~~~iI~p~~~L~~~~~~~~iR~~Ll~~~ 320 (425)
T d2okca1 289 KTGGRAAVVLPDNVLFEAGAGETIRKRLLQDF 320 (425)
T ss_dssp EEEEEEEEEEEHHHHHCSTHHHHHHHHHHHHE
T ss_pred CCCCeEEEEechHHhhhhhhHHHHHHHHHHhc
Confidence 999999888764 22 356777776654
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=3.9e-11 Score=120.34 Aligned_cols=119 Identities=19% Similarity=0.202 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccc
Q psy2395 383 TELLVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWY 461 (570)
Q Consensus 383 t~~l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~ 461 (570)
+....+++.... ..++.+|||+|||+|.+++.+|+.+. .+|+|+|.|+.+.. |++++..++ ...++.++++|+.
T Consensus 20 ~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~-a~~~~~~~~--~~~~i~~~~~~~~ 94 (311)
T d2fyta1 20 TESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQ-AMDIIRLNK--LEDTITLIKGKIE 94 (311)
T ss_dssp HHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHH-HHHHHHHTT--CTTTEEEEESCTT
T ss_pred HHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHH-HHHHHHHhC--CCccceEEEeeHH
Confidence 444445444321 13678999999999999999998763 58999999998875 455554432 4457999999996
Q ss_pred cccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 462 NNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 462 ~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
+ +.....+||+|++++...... +-..+..++....++|+|||.++
T Consensus 95 ~-l~~~~~~~D~Ivse~~~~~~~----------------------~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 95 E-VHLPVEKVDVIISEWMGYFLL----------------------FESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp T-SCCSCSCEEEEEECCCBTTBT----------------------TTCHHHHHHHHHHHHEEEEEEEE
T ss_pred H-hcCccccceEEEEeeeeeecc----------------------cccccHHHHHHHHhcCCCCcEEe
Confidence 6 343457999999987643211 11245677777788999999987
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.1e-11 Score=118.96 Aligned_cols=132 Identities=18% Similarity=0.102 Sum_probs=89.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhc----C-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc-----ccc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS----K-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN-----LQN 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~----~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~-----l~~ 466 (570)
++.+|||+|||+|.++..++... + ...+++|||+|+.|++.|++++..........+.+...++.+. ...
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 34489999999999988876542 1 1357899999999999999998652111112344555554221 122
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-----------
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN----------- 535 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~----------- 535 (570)
.+++||+|++.-.++.. .....+++.+.++|+|||++++.+...
T Consensus 120 ~~~~fD~I~~~~~l~~~-------------------------~d~~~~l~~l~~~LkpgG~l~i~~~~~~~~~~~l~~~~ 174 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYV-------------------------KDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKY 174 (280)
T ss_dssp SCCCEEEEEEESCGGGC-------------------------SCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHH
T ss_pred CCCceeEEEEccceecC-------------------------CCHHHHHHHHHhhCCCCCEEEEEEecCcchHHHHHHHH
Confidence 34789999995332111 123688999999999999998765322
Q ss_pred -------------CHHHHHHHHHHCCCeeEE
Q psy2395 536 -------------QSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 536 -------------~~~~l~~ll~~~Gf~~i~ 553 (570)
....+.++|.+.||....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 175 GSRFPQDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp GGGSCCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred HHhcCCCcccccCCHHHHHHHHHHCCCceEE
Confidence 145678888889987543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.20 E-value=2.9e-11 Score=121.66 Aligned_cols=105 Identities=19% Similarity=0.221 Sum_probs=80.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.+++.+|+.+ ..+|+|+|.|+. ...|++++..++ ...++.++++|+.+ ++...++||+|++
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~--~~~~v~~~~~~~~~-~~~~~~~~D~ivs 106 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANK--LDHVVTIIKGKVEE-VELPVEKVDIIIS 106 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTT--CTTTEEEEESCTTT-CCCSSSCEEEEEE
T ss_pred CcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhC--CccccceEeccHHH-cccccceeEEEee
Confidence 57899999999999999999876 358999999986 467777777653 44579999999966 4444578999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
++...... +-..+..++....++|+|||.++
T Consensus 107 ~~~~~~l~----------------------~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 107 EWMGYCLF----------------------YESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp CCCBBTBT----------------------BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eeeeeeec----------------------cHHHHHHHHHHHHhcCCCCeEEE
Confidence 75432110 11245788889999999999987
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.20 E-value=3.4e-11 Score=121.69 Aligned_cols=105 Identities=19% Similarity=0.258 Sum_probs=81.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|||+|||+|.+++.+|+.+ ..+|+|+|.|+ ++..|++++..++ ...++.++++|+.+ ++.++++||+|++
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~--~~~~i~~i~~~~~~-l~~~~~~~D~i~s 111 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNG--FSDKITLLRGKLED-VHLPFPKVDIIIS 111 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTT--CTTTEEEEESCTTT-SCCSSSCEEEEEE
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhC--ccccceEEEeehhh-ccCcccceeEEEE
Confidence 57899999999999999999876 36999999997 6688988888753 45579999999865 4444579999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEE
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLL 529 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~ 529 (570)
++...... +......++....++|||||.++
T Consensus 112 e~~~~~~~----------------------~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 112 EWMGYFLL----------------------YESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CCCBTTBS----------------------TTCCHHHHHHHHHHHEEEEEEEE
T ss_pred Eecceeec----------------------cchhHHHHHHHHHhccCCCeEEE
Confidence 76532111 11234677888889999999986
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.7e-11 Score=118.57 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=91.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC-------------------------
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN------------------------- 450 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~------------------------- 450 (570)
..+.+|||+|||+|.+++..+... ..+|+|+|+|+.|++.|++++.......+
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 130 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence 357899999999998876555443 35899999999999999988753210000
Q ss_pred --CCEEEEEccccccc-----ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc
Q psy2395 451 --IPIKFIKSNWYNNL-----QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV 523 (570)
Q Consensus 451 --~~v~~~~~D~~~~l-----~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk 523 (570)
....+...|+.... ....++||+|++.-- +..-....+.+..+++++.++||
T Consensus 131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~---------------------l~~i~~~~~~~~~~l~~~~~~Lk 189 (263)
T d2g72a1 131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC---------------------LEAVSPDLASFQRALDHITTLLR 189 (263)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC---------------------HHHHCSSHHHHHHHHHHHHTTEE
T ss_pred hhhhhccccccccCCCccccCCcCcCccCeeeeHHH---------------------HHHHccCHHHHHHHHHHHHHHcC
Confidence 00234455664321 122357999998321 10011123467899999999999
Q ss_pred cCeEEEEEEc----------------CCCHHHHHHHHHHCCCeeEEEE
Q psy2395 524 KNGLLLIEHG----------------YNQSNLVRKLLFKYGFSDIKSW 555 (570)
Q Consensus 524 pgG~l~~~~~----------------~~~~~~l~~ll~~~Gf~~i~~~ 555 (570)
|||.+++... .-..+.+.+++.++||.++++.
T Consensus 190 PGG~li~~~~~~~~~~~~~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 190 PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EEEEEEEEEEESCCEEEETTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred CCCEEEEecccCCcccccCCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 9999987321 1246889999999999987644
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=7.9e-11 Score=109.53 Aligned_cols=132 Identities=19% Similarity=0.221 Sum_probs=100.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc---cc-cCCCc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN---LQ-NYKKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~---l~-~~~~~ 470 (570)
+.++..+||++||+|..+..++...+ +++|+|+|.++.|++.|++++.. .+.++.++++++.+. +. ...++
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~----~~~r~~~~~~~f~~~~~~~~~~~~~~ 95 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKE----FSDRVSLFKVSYREADFLLKTLGIEK 95 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGG----GTTTEEEEECCGGGHHHHHHHTTCSC
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcc----ccccccchhHHHhhHHHHHHHcCCCC
Confidence 45788999999999999999999886 68999999999999999999875 466799999988542 11 11368
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-HHHHHHHHHHC
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-SNLVRKLLFKY 547 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~l~~ll~~~ 547 (570)
||.|+.|.++... -+.....++.+....+..+.+.|+|||.+++..-... ...+.+++++.
T Consensus 96 vdgIl~DlGvSs~----------------Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~ 157 (192)
T d1m6ya2 96 VDGILMDLGVSTY----------------QLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNS 157 (192)
T ss_dssp EEEEEEECSCCHH----------------HHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHHC
T ss_pred cceeeeccchhHh----------------hhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhhc
Confidence 9999998765311 1223445788899999999999999999987542222 23355666653
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=1.1e-10 Score=110.79 Aligned_cols=119 Identities=14% Similarity=0.178 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
|+.-.++..+... .++.+|||+|||+|+-++.+|...+.+++|+++|++++..+.|++|+...+ ...+++++.||+
T Consensus 45 ~~~g~lL~~L~~~--~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag--~~~~i~~~~Gda 120 (219)
T d2avda1 45 CEQAQLLANLARL--IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE--AEHKIDLRLKPA 120 (219)
T ss_dssp HHHHHHHHHHHHH--TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTT--CTTTEEEEESCH
T ss_pred HHHHHHHHHHHHc--cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcC--ccceEEEEEeeh
Confidence 4445555555543 256799999999999999999887767899999999999999999998754 455799999998
Q ss_pred ccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.++.. .++||+|+.+--. +.|...++.+.++|+|||.+++.
T Consensus 121 ~e~l~~~~~~~~~~~fD~ifiD~dk----------------------------~~y~~~~~~~~~lL~~GGvii~D 168 (219)
T d2avda1 121 LETLDELLAAGEAGTFDVAVVDADK----------------------------ENCSAYYERCLQLLRPGGILAVL 168 (219)
T ss_dssp HHHHHHHHHTTCTTCEEEEEECSCS----------------------------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhcchhhhhhcccCCccEEEEeCCH----------------------------HHHHHHHHHHHHHhcCCcEEEEe
Confidence 7755322 3689999995311 23567778888999999999884
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=7.6e-11 Score=126.59 Aligned_cols=161 Identities=14% Similarity=0.146 Sum_probs=105.4
Q ss_pred CCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCC-----------------CcEEEEEeCCHHHHH
Q psy2395 374 SDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKN-----------------KIEIIATDISKFALK 436 (570)
Q Consensus 374 ~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~-----------------~~~V~gvDis~~al~ 436 (570)
..+|+|++..+.|++.+. +.++.+|+|.+||||.+.+.+.+.... ...++|+|+++.+..
T Consensus 144 GqfyTP~~Iv~~mv~ll~---~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~ 220 (524)
T d2ar0a1 144 GQYFTPRPLIKTIIHLLK---PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR 220 (524)
T ss_dssp -CCCCCHHHHHHHHHHHC---CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred chhccccchhHhhhhccc---CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHH
Confidence 458899999998888762 345679999999999999887654310 125899999999999
Q ss_pred HHHHHHHhhcccCCC--CEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHH
Q psy2395 437 IAKKNAKKKLTKYNI--PIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEI 514 (570)
Q Consensus 437 ~A~~n~~~~~~~~~~--~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~ 514 (570)
.|+.|+..++..... .-.+..+|.+........+||+|++||||......... ..+.+ ... .....|
T Consensus 221 la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~---~~~~~------~~~--~~~~~F 289 (524)
T d2ar0a1 221 LALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNIT---RTFVH------PTS--NKQLCF 289 (524)
T ss_dssp HHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCC---SCCSS------CCS--CHHHHH
T ss_pred HHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccch---hhhcc------ccc--cccHHH
Confidence 999999764321111 12455565544322223689999999999754322110 00111 011 122458
Q ss_pred HHHHhhccccCeEEEEEEcCC------CHHHHHHHHHHCC
Q psy2395 515 VKNASKYLVKNGLLLIEHGYN------QSNLVRKLLFKYG 548 (570)
Q Consensus 515 l~~~~~~LkpgG~l~~~~~~~------~~~~l~~ll~~~G 548 (570)
+..+.+.|++||++.+++|.+ ....+++.|.+.+
T Consensus 290 i~~~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~ 329 (524)
T d2ar0a1 290 MQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKC 329 (524)
T ss_dssp HHHHHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHE
T ss_pred HHHHHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcC
Confidence 888889999999999887641 2345777776543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.13 E-value=4.4e-10 Score=106.34 Aligned_cols=137 Identities=9% Similarity=0.066 Sum_probs=96.0
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
|+.-.++..++... ++.+|||+|||+|+.++.+|+..+.+++|+++|+++.+++.|+.|+...+ ...+++++.||.
T Consensus 42 ~~~G~lL~~lv~~~--kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~g--l~~~i~l~~Gd~ 117 (214)
T d2cl5a1 42 DAKGQIMDAVIREY--SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAG--LQDKVTILNGAS 117 (214)
T ss_dssp HHHHHHHHHHHHHH--CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHT--CGGGEEEEESCH
T ss_pred HHHHHHHHHHHHhh--CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcC--CCccceeeeccc
Confidence 45555555555543 56799999999999999999877667899999999999999999998754 345799999999
Q ss_pred ccccccC-----CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE-EcC
Q psy2395 461 YNNLQNY-----KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE-HGY 534 (570)
Q Consensus 461 ~~~l~~~-----~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~-~~~ 534 (570)
.+.++.. .++||+|+.+.-. +. ......+..+.++|+|||++++. +-.
T Consensus 118 ~e~l~~l~~~~~~~~~D~ifiD~~~-------------------------~~-~~~~~~l~~~~~lLkpGGvIv~Ddvl~ 171 (214)
T d2cl5a1 118 QDLIPQLKKKYDVDTLDMVFLDHWK-------------------------DR-YLPDTLLLEKCGLLRKGTVLLADNVIV 171 (214)
T ss_dssp HHHGGGHHHHSCCCCEEEEEECSCG-------------------------GG-HHHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred cccccchhhcccccccceeeecccc-------------------------cc-cccHHHHHHHhCccCCCcEEEEeCcCC
Confidence 7755432 2579999995210 00 11122456677899999988762 112
Q ss_pred CCHHHHHHHHHHC
Q psy2395 535 NQSNLVRKLLFKY 547 (570)
Q Consensus 535 ~~~~~l~~ll~~~ 547 (570)
...+...+.++..
T Consensus 172 ~g~~~~~~~vr~~ 184 (214)
T d2cl5a1 172 PGTPDFLAYVRGS 184 (214)
T ss_dssp CCCHHHHHHHHHC
T ss_pred CCChHHHHHHhcc
Confidence 2234455555554
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.07 E-value=3.7e-10 Score=107.64 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccc
Q psy2395 381 PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNW 460 (570)
Q Consensus 381 ~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~ 460 (570)
|+.-.++..+.... ++.+||++||++|+-++.+|+..+.+++|+.+|++++..+.|++|+.+.+ ...+++++.+|+
T Consensus 45 ~~~g~~L~~L~~~~--~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g--~~~~i~~~~g~a 120 (227)
T d1susa1 45 ADEGQFLSMLLKLI--NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG--VDHKIDFREGPA 120 (227)
T ss_dssp HHHHHHHHHHHHHH--TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTT--CGGGEEEEESCH
T ss_pred HHHHHHHHHHHHhc--CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhc--cccceeeeehHH
Confidence 44445555555433 56799999999999999999888778999999999999999999999754 345799999999
Q ss_pred ccccccC------CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 461 YNNLQNY------KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 461 ~~~l~~~------~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.+.++.. .++||+|+.|-- -..|...++.+.++|+|||.+++.
T Consensus 121 ~~~L~~l~~~~~~~~~fD~iFiDa~----------------------------k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 121 LPVLDEMIKDEKNHGSYDFIFVDAD----------------------------KDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHHHHCGGGTTCBSEEEECSC----------------------------STTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHHHHhccccCCceeEEEeccc----------------------------hhhhHHHHHHHHhhcCCCcEEEEc
Confidence 7765432 368999999531 023567788888999999999884
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=4.9e-10 Score=113.02 Aligned_cols=117 Identities=11% Similarity=0.200 Sum_probs=84.0
Q ss_pred HHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc------cCCCCEEEEEc
Q psy2395 386 LVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT------KYNIPIKFIKS 458 (570)
Q Consensus 386 l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~------~~~~~v~~~~~ 458 (570)
++..++... .+++.+|||+|||+|.+++.+|+..+ ..+++|||+|+.+++.|+++...... ....+++|+++
T Consensus 139 ~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g 217 (328)
T d1nw3a_ 139 LVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG 217 (328)
T ss_dssp HHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence 334444433 36788999999999999999998875 56899999999999999988654210 12346999999
Q ss_pred ccccccccCCC--ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 459 NWYNNLQNYKK--LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 459 D~~~~l~~~~~--~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
|+.+. +..+. .+|+|++|--++. ..+...+.++.+.|||||.++.
T Consensus 218 d~~~~-~~~~~~~~advi~~~~~~f~--------------------------~~~~~~l~e~~r~LKpGg~iv~ 264 (328)
T d1nw3a_ 218 DFLSE-EWRERIANTSVIFVNNFAFG--------------------------PEVDHQLKERFANMKEGGRIVS 264 (328)
T ss_dssp CTTSH-HHHHHHHHCSEEEECCTTTC--------------------------HHHHHHHHHHHTTCCTTCEEEE
T ss_pred ccccc-ccccccCcceEEEEcceecc--------------------------hHHHHHHHHHHHhCCCCcEEEE
Confidence 99763 22112 3588888632221 1346778888999999999976
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.02 E-value=7.1e-09 Score=102.08 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=113.4
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC-EEEEEcccccccccCCCceeE
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSNWYNNLQNYKKLFNI 473 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~-v~~~~~D~~~~l~~~~~~fD~ 473 (570)
..++.+|||+|+|.|.=+..++.... +..|+++|+++.-+...+.|+++. +.+ +.+...|...........||.
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~----g~~~~~~~~~~~~~~~~~~~~~fd~ 174 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRL----GMKATVKQGDGRYPSQWCGEQQFDR 174 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHT----TCCCEEEECCTTCTHHHHTTCCEEE
T ss_pred ccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcc----cccceeeeccccccchhcccccccE
Confidence 45788999999999999999998765 589999999999999999999984 333 444444443222222368999
Q ss_pred EEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHHHHH
Q psy2395 474 IVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRKLLF 545 (570)
Q Consensus 474 Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ll~ 545 (570)
|+.|+|-...... +..|.......... ...-.+++..+.++|+|||.+++.+.. ++...+..+++
T Consensus 175 IL~DaPCSg~G~~-------rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~ 247 (284)
T d1sqga2 175 ILLDAPCSATGVI-------RRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQ 247 (284)
T ss_dssp EEEECCCCCGGGT-------TTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred EEEeccccccCcc-------ccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHH
Confidence 9999996544322 22232222111111 133468999999999999999886533 45566777787
Q ss_pred HC-CCee----------EEEEecCCCCceEEEEEe
Q psy2395 546 KY-GFSD----------IKSWRDLSGIERVTQGKI 569 (570)
Q Consensus 546 ~~-Gf~~----------i~~~~D~~g~~R~~~~~~ 569 (570)
++ +|.. .+++++..+.+-|++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l 282 (284)
T d1sqga2 248 RTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKL 282 (284)
T ss_dssp HCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEE
T ss_pred hCCCcEEecCCCCCCCcEEECCCCCCcccEEEEEE
Confidence 74 4654 456667777788888875
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.96 E-value=1e-08 Score=102.35 Aligned_cols=182 Identities=13% Similarity=0.168 Sum_probs=120.5
Q ss_pred CccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE
Q psy2395 375 DVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK 454 (570)
Q Consensus 375 ~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~ 454 (570)
|.+.....+..++-.++. +.++.+|||+|||.|.=+..++......+.++++|+++.-+...+.|+.+.+ -.++.
T Consensus 96 G~~~vQD~aS~l~~~~l~--~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~---~~~i~ 170 (313)
T d1ixka_ 96 GLIYIQEASSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG---VLNVI 170 (313)
T ss_dssp TSEEECCHHHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT---CCSEE
T ss_pred ceEEEecccccchhhccc--CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH---hhccc
Confidence 333333444444444432 4678899999999999999998776667899999999999999999998853 23577
Q ss_pred EEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCC----hHHHHHHHHHHhhccccCeEEEE
Q psy2395 455 FIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNG----LSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 455 ~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~g----l~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+...|.... ......||.|+.+||-........ .|...+....+. .....+++..+.++|||||.+++
T Consensus 171 ~~~~d~~~~-~~~~~~fD~ILvDaPCSg~G~~~r-------~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVY 242 (313)
T d1ixka_ 171 LFHSSSLHI-GELNVEFDKILLDAPCTGSGTIHK-------NPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVY 242 (313)
T ss_dssp EESSCGGGG-GGGCCCEEEEEEECCTTSTTTCC---------------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccc-ccccccccEEEEccccccCCceee-------ccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEE
Confidence 787887543 333578999999999654432221 222111111111 13456899999999999999888
Q ss_pred EEcC----CCHHHHHHHHHHCCCeeE-------------------------EEEecCCCCceEEEEEe
Q psy2395 531 EHGY----NQSNLVRKLLFKYGFSDI-------------------------KSWRDLSGIERVTQGKI 569 (570)
Q Consensus 531 ~~~~----~~~~~l~~ll~~~Gf~~i-------------------------~~~~D~~g~~R~~~~~~ 569 (570)
.+.. .+...+..++++.+|..+ +++++..+.+-|+++++
T Consensus 243 sTCSl~~eENE~VV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~P~~~~~dGfFiA~l 310 (313)
T d1ixka_ 243 STCSLEPEENEFVIQWALDNFDVELLPLKYGEPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKI 310 (313)
T ss_dssp EESCCCGGGTHHHHHHHHHHSSEEEECCCSSEECCSSGGGCCCCGGGGGSEEECTTTSSSCSEEEEEE
T ss_pred eeccCChHhHHHHHHHHHhcCCCEEeecccCCccccCccccccccccCCcEEECCCCCCcccEEEEEE
Confidence 6533 455667777777665433 44555566667777764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.96 E-value=1.9e-09 Score=110.80 Aligned_cols=109 Identities=12% Similarity=0.150 Sum_probs=76.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcc------cCCCCEEE-EEccccccccc-
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLT------KYNIPIKF-IKSNWYNNLQN- 466 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~------~~~~~v~~-~~~D~~~~l~~- 466 (570)
..++.+|||||||+|.+++.+|...+ ..+|+|||+++.+++.|++++..... .....+.+ ..+++......
T Consensus 214 Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d 292 (406)
T d1u2za_ 214 LKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVA 292 (406)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHH
T ss_pred CCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccc
Confidence 46788999999999999999998875 46999999999999999999875310 01112333 34544332111
Q ss_pred -CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 467 -YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 467 -~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.-..+|+|++|--.+ . ..+...+.++.+.|||||.++.
T Consensus 293 ~~~~~adVV~inn~~f--------------~------------~~l~~~L~ei~r~LKPGGrIVs 331 (406)
T d1u2za_ 293 ELIPQCDVILVNNFLF--------------D------------EDLNKKVEKILQTAKVGCKIIS 331 (406)
T ss_dssp HHGGGCSEEEECCTTC--------------C------------HHHHHHHHHHHTTCCTTCEEEE
T ss_pred cccccceEEEEecccC--------------c------------hHHHHHHHHHHHhcCCCcEEEE
Confidence 014578998863111 1 2446788889999999999876
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.90 E-value=1.2e-08 Score=101.59 Aligned_cols=180 Identities=15% Similarity=0.185 Sum_probs=115.6
Q ss_pred cCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+|..+.++..+..-..+ .+.|+...+.. .+.+.+||.+|.|.|..+..+++..+ ..+|++||++|..++.|++.
T Consensus 43 ~G~~L~ldg~~q~~~~de~~Yhe~l~h~~l~~-~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~ 120 (312)
T d1uira_ 43 FGKVLILDKDVQSTERDEYIYHETLVHPAMLT-HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRH 120 (312)
T ss_dssp TEEEEEETTEEEEETTTHHHHHHHHHHHHHHH-SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHH
T ss_pred cCcEEEECCeeeeccccHHHHHHHHhhhhhhh-CCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhc
Confidence 35555555443332222 34555433322 35678999999999999999887643 57999999999999999998
Q ss_pred HHhh--cccCCCCEEEEEcccccccccCCCceeEEEECCC--CCCCCCcccCCCCccccccccccccCCChHHHHHHHHH
Q psy2395 442 AKKK--LTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPP--YIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKN 517 (570)
Q Consensus 442 ~~~~--~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPP--y~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~ 517 (570)
+... +...+.+++++.+|+.+.+...+.+||+|+++++ +.... |...| +-.++++.
T Consensus 121 f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~dp~~~~~------------~~~~L--------~t~eF~~~ 180 (312)
T d1uira_ 121 MPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVIIDLTDPVGEDN------------PARLL--------YTVEFYRL 180 (312)
T ss_dssp CHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEEECCCCBSTTC------------GGGGG--------SSHHHHHH
T ss_pred CcccccCccCCCceEEEEchHHHHhhhcCCcccEEEEeCCCcccccc------------hhhhh--------hhHHHHHH
Confidence 7532 1113457999999999887766678999998753 32110 00011 12578889
Q ss_pred HhhccccCeEEEEEEc--CCCH----HHHHHHHHHCCCeeEEEEec----CCCCceEEEEE
Q psy2395 518 ASKYLVKNGLLLIEHG--YNQS----NLVRKLLFKYGFSDIKSWRD----LSGIERVTQGK 568 (570)
Q Consensus 518 ~~~~LkpgG~l~~~~~--~~~~----~~l~~ll~~~Gf~~i~~~~D----~~g~~R~~~~~ 568 (570)
+.+.|+|||++++-.+ .... ..+.+.+++ .|..+..+.. +.+..-+++|.
T Consensus 181 ~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~-~F~~V~~y~~~vPs~~~~w~f~~aS 240 (312)
T d1uira_ 181 VKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVRE-AFRYVRSYKNHIPGFFLNFGFLLAS 240 (312)
T ss_dssp HHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHT-TCSEEEEEEEEEGGGTEEEEEEEEE
T ss_pred HHHhcCCCceEEEecCCcccchHHHHHHHHHHHHH-hCceEEEEEeeeCCcCCCCEeEEEe
Confidence 9999999999987543 2222 223344544 4877777653 22233455554
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.88 E-value=2.6e-08 Score=95.76 Aligned_cols=132 Identities=20% Similarity=0.131 Sum_probs=94.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
....+|||+|||+|.+++.+++.+| +.+++..|+ |..++.+ ....+++++.+|+++.++ ..|+++
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~~---------~~~~ri~~~~gd~~~~~p----~~D~~~ 144 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENA---------PPLSGIEHVGGDMFASVP----QGDAMI 144 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTC---------CCCTTEEEEECCTTTCCC----CEEEEE
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhhhhcc---------CCCCCeEEecCCcccccc----cceEEE
Confidence 4457999999999999999999987 689999998 5444211 134579999999987654 359988
Q ss_pred ECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EE--cCC-----------------
Q psy2395 476 ANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EH--GYN----------------- 535 (570)
Q Consensus 476 ~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~--~~~----------------- 535 (570)
+.--.+ ..+.+.-..+++.+++.|+|||.+++ +. +..
T Consensus 145 l~~vLh-----------------------~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m 201 (244)
T d1fp1d2 145 LKAVCH-----------------------NWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLM 201 (244)
T ss_dssp EESSGG-----------------------GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred Eehhhh-----------------------hCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHH
Confidence 832111 11223457899999999999998876 22 210
Q ss_pred ---------CHHHHHHHHHHCCCeeEEEEecCCCCceEE
Q psy2395 536 ---------QSNLVRKLLFKYGFSDIKSWRDLSGIERVT 565 (570)
Q Consensus 536 ---------~~~~l~~ll~~~Gf~~i~~~~D~~g~~R~~ 565 (570)
..++..++++++||+.++++.-..+.--++
T Consensus 202 ~~~~~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~~vi 240 (244)
T d1fp1d2 202 FITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVM 240 (244)
T ss_dssp HHHHSCCCEEHHHHHHHHHHTTCSEEEEEEEETTTEEEE
T ss_pred HhhCCCcCCCHHHHHHHHHHcCCCceEEEecCCCCEEEE
Confidence 135778999999999999875433433333
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.88 E-value=1.7e-08 Score=98.65 Aligned_cols=179 Identities=15% Similarity=0.174 Sum_probs=117.9
Q ss_pred CeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHH
Q psy2395 367 GLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNA 442 (570)
Q Consensus 367 ~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~ 442 (570)
|..+.++........+ .+.++...+.. .+++.+||-+|-|.|..+..+.+..+ ..+|+.|||+|..++.|++..
T Consensus 42 g~~L~LDg~~q~~~~de~~Yhe~l~h~~l~~-~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~ 119 (274)
T d1iy9a_ 42 GNMLFLDGMVMTSEKDEFVYHEMVAHVPLFT-HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFL 119 (274)
T ss_dssp EEEEEETTEEEEETTTHHHHHHHHHHHHHHH-SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHC
T ss_pred CeEEEECCceeeecCchhhchhhhccchhhc-cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhC
Confidence 5555555444433322 44454444432 34678999999999999999987643 579999999999999999987
Q ss_pred Hhhccc-CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhc
Q psy2395 443 KKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKY 521 (570)
Q Consensus 443 ~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~ 521 (570)
..+... .+.+++++.+|+...+.....+||+|+.+++-..... ..|+ -+++++.+.+.
T Consensus 120 ~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D~~~p~~~~-------------~~L~--------t~eFy~~~~~~ 178 (274)
T d1iy9a_ 120 PSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVDSTEPVGPA-------------VNLF--------TKGFYAGIAKA 178 (274)
T ss_dssp HHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEESCSSCCSCC-------------CCCS--------TTHHHHHHHHH
T ss_pred hhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEcCCCCCCcc-------------hhhc--------cHHHHHHHHhh
Confidence 644221 3457999999998887766689999999865211100 0111 25788889999
Q ss_pred cccCeEEEEEEcC--CCHHHHHHHHHH--CCCeeEEEEecC-----CCCceEEEEE
Q psy2395 522 LVKNGLLLIEHGY--NQSNLVRKLLFK--YGFSDIKSWRDL-----SGIERVTQGK 568 (570)
Q Consensus 522 LkpgG~l~~~~~~--~~~~~l~~ll~~--~Gf~~i~~~~D~-----~g~~R~~~~~ 568 (570)
|+|+|+++.-.+. .+.+.+..+++. .-|..+..+.-. .|..-+++|.
T Consensus 179 L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~~vPsy~~g~w~f~~aS 234 (274)
T d1iy9a_ 179 LKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTANIPTYPSGLWTFTIGS 234 (274)
T ss_dssp EEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEECCTTSGGGCEEEEEEE
T ss_pred cCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEEEeeecCCCceEEEEEc
Confidence 9999999886543 344444444332 237777666432 2444555554
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.86 E-value=2.6e-08 Score=97.56 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhc-------ccCCCCEEE
Q psy2395 383 TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKL-------TKYNIPIKF 455 (570)
Q Consensus 383 t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~-------~~~~~~v~~ 455 (570)
.+.|+...+.. .+++.+||-+|+|.|..+..+++. + ..+|++|||||..++.|++.+..+. ...+.++++
T Consensus 59 he~l~~~~l~~-~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i 135 (276)
T d1mjfa_ 59 HEPLVHPAMLA-HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKL 135 (276)
T ss_dssp HHHHHHHHHHH-SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEE
T ss_pred HHHhhcchhhc-CCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceE
Confidence 45555543332 356789999999999999888764 3 3689999999999999998654211 012457999
Q ss_pred EEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE--c
Q psy2395 456 IKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH--G 533 (570)
Q Consensus 456 ~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~--~ 533 (570)
+.+|+...+.. .++||+|+++++-.... . ..| +-.++++.+.+.|+|||++++-. +
T Consensus 136 ~~~Da~~~l~~-~~~yDvIi~D~~~~~~~-----~--------~~L--------~t~eF~~~~~~~L~~~Gv~v~q~~s~ 193 (276)
T d1mjfa_ 136 TIGDGFEFIKN-NRGFDVIIADSTDPVGP-----A--------KVL--------FSEEFYRYVYDALNNPGIYVTQAGSV 193 (276)
T ss_dssp EESCHHHHHHH-CCCEEEEEEECCCCC------------------T--------TSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEChHHHHHhc-cCCCCEEEEeCCCCCCC-----c--------ccc--------cCHHHHHhhHhhcCCCceEEEecCCc
Confidence 99999877654 47899999986532110 0 011 11578889999999999998754 3
Q ss_pred CCCHHHHHHHHHHC--CCeeEEEEe----cCCCCceEEEEE
Q psy2395 534 YNQSNLVRKLLFKY--GFSDIKSWR----DLSGIERVTQGK 568 (570)
Q Consensus 534 ~~~~~~l~~ll~~~--Gf~~i~~~~----D~~g~~R~~~~~ 568 (570)
..+.+.+..+++.. -|..+..+. -+.|..-+++|.
T Consensus 194 ~~~~~~~~~~~~tl~~~F~~v~~y~~~vP~y~~~w~f~~as 234 (276)
T d1mjfa_ 194 YLFTDELISAYKEMKKVFDRVYYYSFPVIGYASPWAFLVGV 234 (276)
T ss_dssp TTSHHHHHHHHHHHHHHCSEEEEEEECCTTSSSSEEEEEEE
T ss_pred chhHHHHHHHHHHHHhhCCeeEEEEecCcCCCCceEEEEEe
Confidence 44555554444321 277777664 233444555553
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.83 E-value=1.8e-08 Score=99.25 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=118.9
Q ss_pred ccCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+|.-+.++........+ .+.|+...+.. .+.+.+||-+|.|.|.++..+++..+ ..+|++|||+|..++.|++
T Consensus 54 ~~G~~l~LDg~~q~~~~De~~YhE~l~h~pl~~-~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~ 131 (295)
T d1inla_ 54 DLGVVFALDGITMTTEKDEFMYHEMLAHVPMFL-HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARK 131 (295)
T ss_dssp TTEEEEEETTEEEEETTTHHHHHHHHHHHHHHH-SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHH
T ss_pred CcceEEEECCEEEEecCchhhhhhhhcchhHhh-CCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHH
Confidence 346666666655554332 44444443332 24678999999999999999887643 5799999999999999999
Q ss_pred HHHhhccc-CCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 441 NAKKKLTK-YNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 441 n~~~~~~~-~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
.+..+... .+.+++++.+|+.+.+....++||+|+++++-.... |...| +-.++++.+.
T Consensus 132 ~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D~~dp~~~------------~~~~L--------~t~efy~~~~ 191 (295)
T d1inla_ 132 YLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIIDSTDPTAG------------QGGHL--------FTEEFYQACY 191 (295)
T ss_dssp HCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEEC----------------------C--------CSHHHHHHHH
T ss_pred HHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEcCCCCCcC------------chhhh--------ccHHHHHHHH
Confidence 87654211 245799999999988876668999999986421100 00011 1268888999
Q ss_pred hccccCeEEEEEEcC--CCHHHHHHH---HHHCCCeeEEEEe----cC-CCCceEEEEE
Q psy2395 520 KYLVKNGLLLIEHGY--NQSNLVRKL---LFKYGFSDIKSWR----DL-SGIERVTQGK 568 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~--~~~~~l~~l---l~~~Gf~~i~~~~----D~-~g~~R~~~~~ 568 (570)
+.|+|||++++-.+. .+.+.+..+ +++. |..+..+. -+ .|..-+++|.
T Consensus 192 ~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~v-F~~v~~y~~~vPtyp~G~w~f~~aS 249 (295)
T d1inla_ 192 DALKEDGVFSAETEDPFYDIGWFKLAYRRISKV-FPITRVYLGFMTTYPSGMWSYTFAS 249 (295)
T ss_dssp HHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHH-CSEEEEEEEECTTSTTSEEEEEEEE
T ss_pred hhcCCCcEEEEecCChhhhhHHHHHHHHHHHhh-cceeEEEEeeeceecCcccEEEEEe
Confidence 999999999886543 444444443 4443 77666553 23 2444566664
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=3.8e-08 Score=97.16 Aligned_cols=142 Identities=12% Similarity=0.026 Sum_probs=93.5
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC--CCcee
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY--KKLFN 472 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~--~~~fD 472 (570)
+.++.+|||+|||.|.-+..+|....+..+|+++|+++.-+...++|+.+.+ -.++.+...|.....+.. .++||
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g---~~~~~~~~~d~~~~~~~~~~~~~fD 168 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAG---VSCCELAEEDFLAVSPSDPRYHEVH 168 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTT---CCSEEEEECCGGGSCTTCGGGTTEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcC---ccceeeeehhhhhhcccccccceee
Confidence 4578899999999999999888765556899999999999999999999853 235889999986532221 25799
Q ss_pred EEEECCCCCCCCCcccCCCCccccccccccc--cCCC---h-HHHHHHHHHHhhccccCeEEEEEEcC----CCHHHHHH
Q psy2395 473 IIVANPPYIPKGDIHLNKGDLRFEPINALTD--YSNG---L-SSIKEIVKNASKYLVKNGLLLIEHGY----NQSNLVRK 542 (570)
Q Consensus 473 ~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~--~~~g---l-~~~~~~l~~~~~~LkpgG~l~~~~~~----~~~~~l~~ 542 (570)
.|+.|||-....... ..|...... .... + .....++..+. .|+|||.+++.+.. .+...+..
T Consensus 169 ~VL~DaPCSg~G~~~-------r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~ 240 (293)
T d2b9ea1 169 YILLDPSCSGSGMPS-------RQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRD 240 (293)
T ss_dssp EEEECCCCCC-------------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHH
T ss_pred EEeecCcccchhhhc-------ccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHH
Confidence 999999965433221 122211111 1111 1 22345777777 47999998876543 45566666
Q ss_pred HHHHC
Q psy2395 543 LLFKY 547 (570)
Q Consensus 543 ll~~~ 547 (570)
+++++
T Consensus 241 ~L~~~ 245 (293)
T d2b9ea1 241 ALQQN 245 (293)
T ss_dssp HHTTS
T ss_pred HHHhC
Confidence 77654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.77 E-value=2.4e-08 Score=98.81 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=115.9
Q ss_pred ccCeeeeecCCccccc----hhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 365 FYGLVLNITSDVLIPR----PETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 365 f~~~~~~v~~~~~~pr----~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+|..+.++..+.... .-.+.|+...+.. .+.+.+||-+|-|.|.++..+++..+ ..+|+.|||++..++.|++
T Consensus 71 ~~G~~L~LDg~~q~~e~de~~YhE~l~h~pl~~-~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~ 148 (312)
T d2b2ca1 71 TYGNVLVLDGIVQATERDEFSYQEMLAHLPMFA-HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKK 148 (312)
T ss_dssp TTEEEEEETTEEEEESSSSSHHHHHHHHHHHHH-SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHH
T ss_pred CcCCEEEECCceeeecccHHHHHHHhhhHHHhc-CCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHh
Confidence 3455555555444333 2355665554432 34677999999999999999987643 4699999999999999999
Q ss_pred HHHhhcc-cCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 441 NAKKKLT-KYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 441 n~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
.+..+.. -.+.+++++.+|+.+.+.....+||+|+++++-- .. |...| +-..|++.+.
T Consensus 149 ~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D~~dp-~~------------~~~~L--------~t~eFy~~~~ 207 (312)
T d2b2ca1 149 FLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITDSSDP-VG------------PAESL--------FGQSYYELLR 207 (312)
T ss_dssp HCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEECCC----------------------------------HHHHHH
T ss_pred hchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEcCCCC-CC------------cchhh--------hhHHHHHHHH
Confidence 8754321 1245799999999888776567899999986421 00 00011 2367889999
Q ss_pred hccccCeEEEEEEcC--CCHHHHH---HHHHHCCCeeEEEEec----C-CCCceEEEEE
Q psy2395 520 KYLVKNGLLLIEHGY--NQSNLVR---KLLFKYGFSDIKSWRD----L-SGIERVTQGK 568 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~--~~~~~l~---~ll~~~Gf~~i~~~~D----~-~g~~R~~~~~ 568 (570)
+.|+|||+++.-.+. .+.+.+. +.+++. |..+..+.- + .|..-+++|.
T Consensus 208 ~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~v-F~~v~~y~~~vPtyp~G~w~f~~aS 265 (312)
T d2b2ca1 208 DALKEDGILSSQGESVWLHLPLIAHLVAFNRKI-FPAVTYAQSIVSTYPSGSMGYLICA 265 (312)
T ss_dssp HHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHH-CSEEEEEEEECTTSGGGEEEEEEEE
T ss_pred hhcCCCcEEEEecCChHHhHHHHHHHHHHhhhc-cceEEEeeeccCCcCCccceeeEEE
Confidence 999999999986543 3343333 344443 766665532 2 2444566664
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=2.9e-08 Score=97.46 Aligned_cols=179 Identities=15% Similarity=0.239 Sum_probs=114.6
Q ss_pred cCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+|.-+.++....+...+ .+.++...+. ..+.+.+||-+|-|.|..+..+.+..+ ..+|+.|||+|..++.|++.
T Consensus 44 ~g~~L~lDg~~q~~~~de~~Yhe~l~h~~l~-~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~ 121 (285)
T d2o07a1 44 YGNVLVLDGVIQCTERDEFSYQEMIANLPLC-SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKF 121 (285)
T ss_dssp SCEEEEETTEEEEETTTHHHHHHHHHHHHHT-TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHH
T ss_pred CCeEEEECCcEEEecCCHHHHHHHhccHhhh-hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhh
Confidence 35556555444443322 3344433322 224678999999999999999986643 57999999999999999987
Q ss_pred HHhhcc-cCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhh
Q psy2395 442 AKKKLT-KYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASK 520 (570)
Q Consensus 442 ~~~~~~-~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~ 520 (570)
+..+.. ..+.+++++.+|+...+....++||+|+++++- +.. |...| +-.++++.+.+
T Consensus 122 ~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D~~~-p~~------------~~~~L--------~t~eF~~~~~~ 180 (285)
T d2o07a1 122 LPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITDSSD-PMG------------PAESL--------FKESYYQLMKT 180 (285)
T ss_dssp CHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEECC--------------------------------CHHHHHHHH
T ss_pred chhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEcCCC-CCC------------ccccc--------ccHHHHHHHHH
Confidence 754321 235589999999988877656799999998632 110 00011 22578889999
Q ss_pred ccccCeEEEEEEc--CCCHHHHHH---HHHHCCCeeEEEEe----cC-CCCceEEEEE
Q psy2395 521 YLVKNGLLLIEHG--YNQSNLVRK---LLFKYGFSDIKSWR----DL-SGIERVTQGK 568 (570)
Q Consensus 521 ~LkpgG~l~~~~~--~~~~~~l~~---ll~~~Gf~~i~~~~----D~-~g~~R~~~~~ 568 (570)
.|+|||.+++-.+ ......+.. .+++ .|..+..+. .+ .|..-+++|.
T Consensus 181 ~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~-~F~~v~~y~~~vP~~~~g~w~f~~aS 237 (285)
T d2o07a1 181 ALKEDGVLCCQGECQWLHLDLIKEMRQFCQS-LFPVVAYAYCTIPTYPSGQIGFMLCS 237 (285)
T ss_dssp HEEEEEEEEEEEECTTTCHHHHHHHHHHHHH-HCSEEEEEEEECTTSGGGEEEEEEEE
T ss_pred hcCCCCeEEEeccchhhhHHHHHHHHHHHHh-cCCeeeEEeeeeeecCCCCeEEEEEE
Confidence 9999999988654 334444333 3444 377766543 23 2334455554
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.74 E-value=4.8e-08 Score=99.48 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=84.3
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccC------------CCCEEEEEccccccc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKY------------NIPIKFIKSNWYNNL 464 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~------------~~~v~~~~~D~~~~l 464 (570)
++.+|||..||||..++..|++.+ ..+|+++|+|+.+++.+++|++.|+... ...+.+.+.|+...+
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~ 123 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM 123 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence 567999999999999998888765 5699999999999999999999875321 123677788876555
Q ss_pred ccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 465 QNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
......||+|..|| |... ..++..+.+.++.||.+.+...
T Consensus 124 ~~~~~~fDvIDiDP-fGs~----------------------------~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 124 AERHRYFHFIDLDP-FGSP----------------------------MEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHSTTCEEEEEECC-SSCC----------------------------HHHHHHHHHHEEEEEEEEEEEC
T ss_pred HhhcCcCCcccCCC-CCCc----------------------------HHHHHHHHHHhccCCEEEEEec
Confidence 44446899999997 5421 4677888889999999988653
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.73 E-value=1.8e-08 Score=96.18 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=68.7
Q ss_pred HHHHHHhhc-CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc
Q psy2395 386 LVDLIVKKT-FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL 464 (570)
Q Consensus 386 l~~~~~~~~-~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l 464 (570)
+++.++... ..++++|||||||+|.++..|+..+ .+|+|||+|+.+++.++++... ..+++++++|+++..
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~---~~v~avE~D~~l~~~l~~~~~~-----~~n~~i~~~D~l~~~ 80 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD-----HDNFQVLNKDILQFK 80 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT-----CCSEEEECCCGGGCC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc---CceEEEeeccchHHHHHHHhhc-----ccchhhhhhhhhhcc
Confidence 344444433 3578899999999999999999764 5899999999999999987652 457999999998743
Q ss_pred ccCCCceeEEEECCCCCCC
Q psy2395 465 QNYKKLFNIIVANPPYIPK 483 (570)
Q Consensus 465 ~~~~~~fD~Iv~NPPy~~~ 483 (570)
.. ......||+|.||.-+
T Consensus 81 ~~-~~~~~~vv~NLPYnIs 98 (235)
T d1qama_ 81 FP-KNQSYKIFGNIPYNIS 98 (235)
T ss_dssp CC-SSCCCEEEEECCGGGH
T ss_pred cc-ccccceeeeeehhhhh
Confidence 22 2344578999999743
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=2.2e-07 Score=86.61 Aligned_cols=118 Identities=13% Similarity=0.167 Sum_probs=92.0
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
++.+|+|+|||.|.-++.+|-..| +.+++.+|.+..-+...+.-....+ -.+++++++.+.+... ..+||+|++
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~---L~nv~v~~~R~E~~~~--~~~fD~V~s 138 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELK---LENIEPVQSRVEEFPS--EPPFDGVIS 138 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTT---CSSEEEEECCTTTSCC--CSCEEEEEC
T ss_pred cCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcC---Ccceeeeccchhhhcc--ccccceehh
Confidence 456999999999999999998876 6899999999999999988777632 1369999999866433 368999998
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCee
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSD 551 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~ 551 (570)
-. +..+..+++.+..+++++|.+++.-|....+++..+- .+|..
T Consensus 139 RA-----------------------------~~~~~~ll~~~~~~l~~~g~~~~~KG~~~~eEl~~~~--~~~~~ 182 (207)
T d1jsxa_ 139 RA-----------------------------FASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALLP--EEYQV 182 (207)
T ss_dssp SC-----------------------------SSSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTSC--TTEEE
T ss_pred hh-----------------------------hcCHHHHHHHHHHhcCCCcEEEEECCCCHHHHHHhhh--cCCEE
Confidence 21 1234788999999999999999988877766654332 35543
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.68 E-value=1.1e-09 Score=105.40 Aligned_cols=100 Identities=19% Similarity=0.313 Sum_probs=74.6
Q ss_pred cCeeeeecCCccccchhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhh
Q psy2395 366 YGLVLNITSDVLIPRPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKK 445 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~ 445 (570)
+|..|.+++++. +.+++.+ ...++..|||||||+|.++..|++.+ .+|+|||+|+.+++.++++..
T Consensus 7 ~GQnFL~d~~ii------~kIv~~~---~~~~~d~VLEIGpG~G~LT~~L~~~~---~~v~aIE~D~~l~~~l~~~~~-- 72 (245)
T d1yuba_ 7 YSQNFLTSEKVL------NQIIKQL---NLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK-- 72 (245)
T ss_dssp SCCCBCCCTTTH------HHHHHHC---CCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--
T ss_pred CCCcccCCHHHH------HHHHHhc---CCCCCCeEEEECCCccHHHHHHHhhc---CceeEeeecccchhhhhhhhh--
Confidence 355555555443 4444433 23567899999999999999999875 589999999999988876654
Q ss_pred cccCCCCEEEEEcccccccccCCCceeEEEECCCCCCC
Q psy2395 446 LTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPK 483 (570)
Q Consensus 446 ~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~ 483 (570)
...+++++++|+++.. .....++.||+|.||.-+
T Consensus 73 ---~~~n~~ii~~D~l~~~-~~~~~~~~vv~NLPY~Is 106 (245)
T d1yuba_ 73 ---LNTRVTLIHQDILQFQ-FPNKQRYKIVGNIPYHLS 106 (245)
T ss_dssp ---TCSEEEECCSCCTTTT-CCCSSEEEEEEECCSSSC
T ss_pred ---hccchhhhhhhhhccc-cccceeeeEeeeeehhhh
Confidence 2347999999997743 224678899999999754
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.61 E-value=2.7e-07 Score=90.58 Aligned_cols=160 Identities=16% Similarity=0.237 Sum_probs=106.2
Q ss_pred cCeeeeecCCccccchh----HHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 366 YGLVLNITSDVLIPRPE----TELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 366 ~~~~~~v~~~~~~pr~~----t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+|.-+.++..+..-..+ .+.++...+. ..+++.+||=+|-|.|.++..+.+..+ ..+|++|||++..++.|++.
T Consensus 46 ~gr~L~LDg~~q~~e~de~~Yhe~l~h~~~~-~~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~ 123 (290)
T d1xj5a_ 46 YGKVLVLDGVIQLTERDECAYQEMITHLPLC-SIPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQF 123 (290)
T ss_dssp SCEEEEETTEEEEETTTHHHHHHHHHHHHHT-TSSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHH
T ss_pred CCeEEEECCeEeeeccchhHHHHHHhhHHHh-hCCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHh
Confidence 45555555544433322 3344443332 235678999999999999999987643 46899999999999999997
Q ss_pred HHhhc-ccCCCCEEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHh
Q psy2395 442 AKKKL-TKYNIPIKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNAS 519 (570)
Q Consensus 442 ~~~~~-~~~~~~v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~ 519 (570)
...+. ...+.+++++.+|+.+.+... +++||+|+.+++- +.. |-..| +-..+++.+.
T Consensus 124 f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi~D~~d-p~~------------~~~~L--------~t~eF~~~~~ 182 (290)
T d1xj5a_ 124 FPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIVDSSD-PIG------------PAKEL--------FEKPFFQSVA 182 (290)
T ss_dssp CHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEECCCC-TTS------------GGGGG--------GSHHHHHHHH
T ss_pred chhhhccccCCCcEEEEccHHHHHhhccccCccEEEEcCCC-CCC------------cchhh--------CCHHHHHHHH
Confidence 65431 123567999999998877543 3589999998641 110 00111 2267899999
Q ss_pred hccccCeEEEEEEcC--CCHHHH---HHHHHHCC
Q psy2395 520 KYLVKNGLLLIEHGY--NQSNLV---RKLLFKYG 548 (570)
Q Consensus 520 ~~LkpgG~l~~~~~~--~~~~~l---~~ll~~~G 548 (570)
+.|+|||++++-.+. .+.+.+ .+.+++..
T Consensus 183 ~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF 216 (290)
T d1xj5a_ 183 RALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF 216 (290)
T ss_dssp HHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence 999999999986654 334443 34444543
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.58 E-value=2.3e-07 Score=88.90 Aligned_cols=123 Identities=14% Similarity=0.149 Sum_probs=89.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
...+|+|+|||+|.+++.+++.+| +.+++..|. |..++.+ ....+++++.+|+++..+ .+|++++
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi~~~---------~~~~rv~~~~gD~f~~~p----~aD~~~l 144 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENL---------SGSNNLTYVGGDMFTSIP----NADAVLL 144 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTC---------CCBTTEEEEECCTTTCCC----CCSEEEE
T ss_pred CceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHHHHhC---------cccCceEEEecCcccCCC----CCcEEEE
Confidence 346899999999999999999987 689999998 5544322 134579999999987542 5799988
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccC---eEEEEE---EcCC---------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKN---GLLLIE---HGYN--------------- 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lkpg---G~l~~~---~~~~--------------- 535 (570)
.--.+ .-.-+.-..+++++++.|+|| |++++. ++..
T Consensus 145 ~~vLH-----------------------dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl 201 (244)
T d1fp2a2 145 KYILH-----------------------NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDV 201 (244)
T ss_dssp ESCGG-----------------------GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHH
T ss_pred Eeecc-----------------------cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHH
Confidence 32111 011234468999999999998 555542 1111
Q ss_pred ----------CHHHHHHHHHHCCCeeEEEEec
Q psy2395 536 ----------QSNLVRKLLFKYGFSDIKSWRD 557 (570)
Q Consensus 536 ----------~~~~l~~ll~~~Gf~~i~~~~D 557 (570)
..++..+++.++||+.+++++-
T Consensus 202 ~m~~~~G~ert~~e~~~ll~~AGf~~~~i~~~ 233 (244)
T d1fp2a2 202 NMACLNGKERNEEEWKKLFIEAGFQHYKISPL 233 (244)
T ss_dssp HGGGGTCCCEEHHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHhCCCcCCCHHHHHHHHHHcCCceEEEEEC
Confidence 1467899999999999998754
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.57 E-value=2.2e-07 Score=89.00 Aligned_cols=124 Identities=15% Similarity=0.163 Sum_probs=87.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
...+|+|+|||+|.+++.+++.+| +.+++++|+.+. ++.+ ....++.+..+|+++.++. .|+++.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp~v-i~~~---------~~~~r~~~~~~d~~~~~P~----ad~~~l 145 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLPHV-IEDA---------PSYPGVEHVGGDMFVSIPK----ADAVFM 145 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECTTT-TTTC---------CCCTTEEEEECCTTTCCCC----CSCEEC
T ss_pred CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccHHh-hhhc---------ccCCceEEecccccccCCC----cceEEE
Confidence 356899999999999999999997 689999999543 3211 1345799999999876542 344443
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE---EcC---C---------------
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE---HGY---N--------------- 535 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~---~~~---~--------------- 535 (570)
.- +. +....+....+++++++.|+|||.+++. .+. .
T Consensus 146 ~~-------------vl----------h~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml 202 (243)
T d1kyza2 146 KW-------------IC----------HDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIML 202 (243)
T ss_dssp SS-------------SS----------TTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHH
T ss_pred EE-------------Ee----------ecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHH
Confidence 11 11 0112235578999999999999988763 111 0
Q ss_pred ---------CHHHHHHHHHHCCCeeEEEEecC
Q psy2395 536 ---------QSNLVRKLLFKYGFSDIKSWRDL 558 (570)
Q Consensus 536 ---------~~~~l~~ll~~~Gf~~i~~~~D~ 558 (570)
..++..++++++||+.++++...
T Consensus 203 ~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~ 234 (243)
T d1kyza2 203 AHNPGGKERTQKEFEDLAKGAGFQGFKVHCNA 234 (243)
T ss_dssp HHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEE
T ss_pred hhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeC
Confidence 13578899999999999987653
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=98.54 E-value=4.2e-08 Score=93.86 Aligned_cols=119 Identities=9% Similarity=0.123 Sum_probs=81.9
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcC---------------------------------------CCcEEEEEeCCHHHHH
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSK---------------------------------------NKIEIIATDISKFALK 436 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~---------------------------------------~~~~V~gvDis~~al~ 436 (570)
..+..++|.+||||++.+.+|.... ....++|.|+++.+++
T Consensus 49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~ 128 (249)
T d1o9ga_ 49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ 128 (249)
T ss_dssp CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence 3456799999999999998875320 0135789999999999
Q ss_pred HHH---HHHHhhcccCCCCEEEEEccccccccc----CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChH
Q psy2395 437 IAK---KNAKKKLTKYNIPIKFIKSNWYNNLQN----YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLS 509 (570)
Q Consensus 437 ~A~---~n~~~~~~~~~~~v~~~~~D~~~~l~~----~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~ 509 (570)
.|+ .|+...+ ....+++.+.|+++..+. .....++||+||||...-.. .+..+.+
T Consensus 129 ~A~~~r~n~~~Ag--l~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~----------------~~~~~~~ 190 (249)
T d1o9ga_ 129 AARRLRERLTAEG--GALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHW----------------EGQVPGQ 190 (249)
T ss_dssp HHHHHHHHHHHTT--SSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSS----------------SSCCCHH
T ss_pred HHHHHHHHHHHcC--CCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccc----------------cccchHH
Confidence 995 5776543 445699999999764331 12567999999999854311 1112235
Q ss_pred HHHHHHHHHhhccccCeEEEEEEc
Q psy2395 510 SIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 510 ~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
.+..+...+.+.+. +..+++.+.
T Consensus 191 ~~~~~~~~l~~~~p-~~s~~~it~ 213 (249)
T d1o9ga_ 191 PVAGLLRSLASALP-AHAVIAVTD 213 (249)
T ss_dssp HHHHHHHHHHHHSC-TTCEEEEEE
T ss_pred HHHHHHHHHHccCC-CCcEEEEeC
Confidence 77888888888885 444444443
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.51 E-value=6.1e-07 Score=82.81 Aligned_cols=124 Identities=16% Similarity=0.248 Sum_probs=76.9
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHH----Hhc---CCCcEEEEEeCCHHHHHHHHHHHHh------------
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIA----IYS---KNKIEIIATDISKFALKIAKKNAKK------------ 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la----~~~---~~~~~V~gvDis~~al~~A~~n~~~------------ 444 (570)
+.|.+.+.. ..++.+||++|||||.-+..+| ... ....+|+|+|+|+.+++.|+.....
T Consensus 13 ~~L~~~~~~--~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~ 90 (193)
T d1af7a2 13 PILAEHARR--RHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQL 90 (193)
T ss_dssp HHHHHHHHH--SCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHH
T ss_pred HHHHHHHhc--cCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHH
Confidence 344444443 2356799999999998544433 221 1235899999999999999854211
Q ss_pred --hcccCC--------------CCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccc-cccccccccCCC
Q psy2395 445 --KLTKYN--------------IPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRF-EPINALTDYSNG 507 (570)
Q Consensus 445 --~~~~~~--------------~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~-ep~~al~~~~~g 507 (570)
...... ..+.+...+.........++||+|+|- +++.| .|
T Consensus 91 ~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CR-------------NVLiYf~~---------- 147 (193)
T d1af7a2 91 QRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCR-------------NVMIYFDK---------- 147 (193)
T ss_dssp HHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEEC-------------SSGGGSCH----------
T ss_pred hhceeecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEee-------------hhHHhcCH----------
Confidence 000000 124556666554333334789999992 22211 11
Q ss_pred hHHHHHHHHHHhhccccCeEEEEEEc
Q psy2395 508 LSSIKEIVKNASKYLVKNGLLLIEHG 533 (570)
Q Consensus 508 l~~~~~~l~~~~~~LkpgG~l~~~~~ 533 (570)
+...++++.+.+.|+|||+|++...
T Consensus 148 -~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 148 -TTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp -HHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred -HHHHHHHHHHHHHhCCCcEEEEecC
Confidence 3457899999999999999887543
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.50 E-value=1.3e-07 Score=86.50 Aligned_cols=132 Identities=18% Similarity=0.136 Sum_probs=96.9
Q ss_pred CCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc---cc-CCCc
Q psy2395 395 FEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL---QN-YKKL 470 (570)
Q Consensus 395 ~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l---~~-~~~~ 470 (570)
+.++..++|.+||.|..+..+... +.+|+|+|.+|.++..|++. ...++.++++++.+.. .. ..++
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-------~~~~~~~~~~~f~~~~~~l~~~~~~~ 85 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-------HLPGLTVVQGNFRHLKRHLAALGVER 85 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-------CCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-------cccceeEeehHHHHHHHHHHHcCCCc
Confidence 467889999999999999999864 46999999999999988753 2346899998875421 11 1267
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCC-HHHHHHHHHHCCC
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQ-SNLVRKLLFKYGF 549 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~l~~ll~~~Gf 549 (570)
+|.|+.|..+... -+.....++.+....+..+...|++||.+++..-... ...+...+++.++
T Consensus 86 vdgIl~DLGvSs~----------------qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~Ed~ivk~~~~e~~~ 149 (182)
T d1wg8a2 86 VDGILADLGVSSF----------------HLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGL 149 (182)
T ss_dssp EEEEEEECSCCHH----------------HHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHHHHHHHHHHHHHCS
T ss_pred cCEEEEEccCCHH----------------HhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccchhHHHHHHHhhccc
Confidence 9999998765321 1122235677888899999999999999987553322 2346778888877
Q ss_pred eeE
Q psy2395 550 SDI 552 (570)
Q Consensus 550 ~~i 552 (570)
..+
T Consensus 150 k~i 152 (182)
T d1wg8a2 150 KVL 152 (182)
T ss_dssp EES
T ss_pred eec
Confidence 654
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=8.7e-07 Score=80.74 Aligned_cols=155 Identities=12% Similarity=0.162 Sum_probs=102.5
Q ss_pred HHHHHHHhh-cCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccc
Q psy2395 385 LLVDLIVKK-TFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNN 463 (570)
Q Consensus 385 ~l~~~~~~~-~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~ 463 (570)
.|.+...+. +.+++.+||||||+.|.++..+++.......|+|+|+.+- . .-..+.++++|+.+.
T Consensus 9 KL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-----~i~~~~~~~~d~~~~ 74 (180)
T d1ej0a_ 9 KLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-----PIVGVDFLQGDFRDE 74 (180)
T ss_dssp HHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-----CCTTEEEEESCTTSH
T ss_pred HHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-----ccCCceEeecccccc
Confidence 344433333 3467889999999999999999877655689999998762 1 223588999998653
Q ss_pred cc-------cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE-EEcCC
Q psy2395 464 LQ-------NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI-EHGYN 535 (570)
Q Consensus 464 l~-------~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~-~~~~~ 535 (570)
.. ....+||+|++|........... ............+..+.++|++||.+++ .....
T Consensus 75 ~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~--------------d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~ 140 (180)
T d1ej0a_ 75 LVMKALLERVGDSKVQVVMSDMAPNMSGTPAV--------------DIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGE 140 (180)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCCCCSCHHH--------------HHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESST
T ss_pred hhhhhhhhhccCcceeEEEecccchhcccchh--------------HHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCc
Confidence 21 12368999999843222111100 0011234566778888999999999998 44445
Q ss_pred CHHHHHHHHHHCCCeeEEEEecCC----CCceEEEEE
Q psy2395 536 QSNLVRKLLFKYGFSDIKSWRDLS----GIERVTQGK 568 (570)
Q Consensus 536 ~~~~l~~ll~~~Gf~~i~~~~D~~----g~~R~~~~~ 568 (570)
....+...++. -|..+.+++.-+ ..+++++|+
T Consensus 141 ~~~~l~~~l~~-~F~~V~~~KP~aSR~~SsE~Ylv~~ 176 (180)
T d1ej0a_ 141 GFDEYLREIRS-LFTKVKVRKPDSSRARSREVYIVAT 176 (180)
T ss_dssp THHHHHHHHHH-HEEEEEEECCTTSCTTCCEEEEEEE
T ss_pred cHHHHHHHHHh-hcCEEEEECCCCcccCCceEEEEEe
Confidence 56667777765 488888888664 445666654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.46 E-value=2.8e-06 Score=80.54 Aligned_cols=137 Identities=14% Similarity=0.159 Sum_probs=98.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc--cCCCceeEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--NYKKLFNII 474 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--~~~~~fD~I 474 (570)
...+++|+|||.|.-++.+|-..| +.+++.+|.+..-+...+.-....++ .++.++++.+.+... ...++||+|
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L---~n~~i~~~R~E~~~~~~~~~~~~D~v 145 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQL---ENTTFCHDRAETFGQRKDVRESYDIV 145 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTC---SSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCC---CCcEEEeehhhhccccccccccceEE
Confidence 457999999999999999998776 68999999999988888877765421 258888888754322 223689999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHH---HHHHHCCCee
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVR---KLLFKYGFSD 551 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~---~ll~~~Gf~~ 551 (570)
++- |+ ..+..+++.+..++++||.+++.-|....+++. +.+...|+..
T Consensus 146 ~sR----------------------Av-------a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 146 TAR----------------------AV-------ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGEL 196 (239)
T ss_dssp EEE----------------------CC-------SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEE
T ss_pred EEh----------------------hh-------hCHHHHHHHHhhhcccCCEEEEECCCChHHHHHHHHHHHHHcCCEE
Confidence 991 11 234788999999999999999988887766554 4566778776
Q ss_pred EEEEe---cCCCCceEEE
Q psy2395 552 IKSWR---DLSGIERVTQ 566 (570)
Q Consensus 552 i~~~~---D~~g~~R~~~ 566 (570)
..+.. ...+.+|.++
T Consensus 197 ~~v~~~~lp~~~~~r~lv 214 (239)
T d1xdza_ 197 ENIHSFKLPIEESDRNIM 214 (239)
T ss_dssp EEEEEEECTTTCCEEEEE
T ss_pred EEEEEEeCCCCCCCEEEE
Confidence 44332 2344455443
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=4.5e-07 Score=88.22 Aligned_cols=79 Identities=16% Similarity=0.274 Sum_probs=65.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
.++..|||+|+|+|.++..|++.+ .+|+++|+|+.+++..++.+..+ ....+++++.+|+++... ..++.||
T Consensus 20 ~~~d~VlEIGPG~G~LT~~Ll~~~---~~v~aiE~D~~l~~~L~~~~~~~--~~~~~~~~i~~D~l~~~~---~~~~~vV 91 (278)
T d1zq9a1 20 RPTDVVLEVGPGTGNMTVKLLEKA---KKVVACELDPRLVAELHKRVQGT--PVASKLQVLVGDVLKTDL---PFFDTCV 91 (278)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEESCTTTSCC---CCCSEEE
T ss_pred CCCCEEEEECCCchHHHHHHHhcC---CcEEEEEEccchhHHHHHHHhhh--ccccchhhhHHHHhhhhh---hhhhhhh
Confidence 467899999999999999999875 58999999999999999887642 123469999999977432 3567899
Q ss_pred ECCCCCC
Q psy2395 476 ANPPYIP 482 (570)
Q Consensus 476 ~NPPy~~ 482 (570)
+|.||.-
T Consensus 92 ~NLPY~I 98 (278)
T d1zq9a1 92 ANLPYQI 98 (278)
T ss_dssp EECCGGG
T ss_pred cchHHHH
Confidence 9999964
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=3e-07 Score=88.42 Aligned_cols=81 Identities=10% Similarity=0.053 Sum_probs=62.1
Q ss_pred CCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccC----CCce
Q psy2395 396 EKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNY----KKLF 471 (570)
Q Consensus 396 ~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~----~~~f 471 (570)
.++..|||+|||+|.++..|++.+ .+|++||+|+.+++..+.... ...+++++.+|+.+..... .+..
T Consensus 20 ~~~d~vlEIGpG~G~LT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~-----~~~~~~ii~~D~l~~~~~~~~~~~~~~ 91 (252)
T d1qyra_ 20 QKGQAMVEIGPGLAALTEPVGERL---DQLTVIELDRDLAARLQTHPF-----LGPKLTIYQQDAMTFNFGELAEKMGQP 91 (252)
T ss_dssp CTTCCEEEECCTTTTTHHHHHTTC---SCEEEECCCHHHHHHHHTCTT-----TGGGEEEECSCGGGCCHHHHHHHHTSC
T ss_pred CCCCEEEEECCCchHHHHHHHccC---CceEEEEeccchhHHHHHHhh-----hccchhHHhhhhhhhcccccccccCCC
Confidence 467899999999999999999654 589999999999999887543 2347999999997632210 1233
Q ss_pred eEEEECCCCCCCC
Q psy2395 472 NIIVANPPYIPKG 484 (570)
Q Consensus 472 D~Iv~NPPy~~~~ 484 (570)
-.|++|.||.-..
T Consensus 92 ~~vvgNlPY~Iss 104 (252)
T d1qyra_ 92 LRVFGNLPYNIST 104 (252)
T ss_dssp EEEEEECCTTTHH
T ss_pred eEEEecchHHHHH
Confidence 4788999997543
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=98.19 E-value=1.6e-06 Score=82.70 Aligned_cols=83 Identities=10% Similarity=0.145 Sum_probs=66.8
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCC------CCEEEEEcccccccccCCCce
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYN------IPIKFIKSNWYNNLQNYKKLF 471 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~------~~v~~~~~D~~~~l~~~~~~f 471 (570)
..+|||..||.|..+..+|..+ ++|+++|-+|......+.++.+...... .+++++++|..+.+.....+|
T Consensus 89 ~~~VlD~TaGlG~Da~vlA~~G---~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~ 165 (250)
T d2oyra1 89 LPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP 165 (250)
T ss_dssp CCCEEETTCTTCHHHHHHHHHT---CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred CCEEEECCCcccHHHHHHHhCC---CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence 3489999999999999999875 6899999999988888877665321111 269999999988776656789
Q ss_pred eEEEECCCCCCC
Q psy2395 472 NIIVANPPYIPK 483 (570)
Q Consensus 472 D~Iv~NPPy~~~ 483 (570)
|+|+.+|+|-..
T Consensus 166 DvIYlDPMFp~~ 177 (250)
T d2oyra1 166 QVVYLDPMFPHK 177 (250)
T ss_dssp SEEEECCCCCCC
T ss_pred CEEEECCCCccc
Confidence 999999999543
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.90 E-value=1.5e-05 Score=75.28 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=56.8
Q ss_pred chhHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE
Q psy2395 380 RPETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYS---KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI 456 (570)
Q Consensus 380 r~~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~---~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~ 456 (570)
.|..-.+...++... ++.+|||+|++.|.-++.++... ...++|+|+|+++.....+. ....+++++
T Consensus 65 ~p~d~~~~~eli~~~--KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~--------~~~~~I~~i 134 (232)
T d2bm8a1 65 DPDTQAVYHDMLWEL--RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--------SDMENITLH 134 (232)
T ss_dssp CHHHHHHHHHHHHHH--CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--------GGCTTEEEE
T ss_pred CHHHHHHHHHHHHHh--CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh--------ccccceeee
Confidence 354444555555433 56799999999998887776432 33689999999886543221 123469999
Q ss_pred Ecccccccc--cC-CCceeEEEEC
Q psy2395 457 KSNWYNNLQ--NY-KKLFNIIVAN 477 (570)
Q Consensus 457 ~~D~~~~l~--~~-~~~fD~Iv~N 477 (570)
++|..+... .. ...+|+|+.+
T Consensus 135 ~gDs~~~~~~~~l~~~~~dlIfID 158 (232)
T d2bm8a1 135 QGDCSDLTTFEHLREMAHPLIFID 158 (232)
T ss_dssp ECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred ecccccHHHHHHHHhcCCCEEEEc
Confidence 999754321 11 2467888774
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.47 E-value=0.00014 Score=68.20 Aligned_cols=136 Identities=7% Similarity=0.039 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCC-EEEEEccc
Q psy2395 382 ETELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIP-IKFIKSNW 460 (570)
Q Consensus 382 ~t~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~-v~~~~~D~ 460 (570)
.+..|.+........+..+|+|+|||.|..+..++...+ ...|.|+++--..-+ .-.... .+.-+ +.+...+-
T Consensus 51 ~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e-~P~~~~----~~~~ni~~~~~~~d 124 (257)
T d2p41a1 51 GSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHE-EPIPMS----TYGWNLVRLQSGVD 124 (257)
T ss_dssp HHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSC-CCCCCC----STTGGGEEEECSCC
T ss_pred HHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCcccc-CCcccc----ccccccccchhhhh
Confidence 344454444444456778999999999999999987643 467888887311000 000000 01111 45555443
Q ss_pred ccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHH
Q psy2395 461 YNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLV 540 (570)
Q Consensus 461 ~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l 540 (570)
...++ ..+.|+|+|+.-=. .+. ..+ +. .-..++++.+.+.|+|||.|++-+-....+.+
T Consensus 125 v~~l~--~~~~D~vlcDm~es-s~~-----~~v------------d~-~Rtl~vLela~~wLk~gg~FvvKVl~py~~~v 183 (257)
T d2p41a1 125 VFFIP--PERCDTLLCDIGES-SPN-----PTV------------EA-GRTLRVLNLVENWLSNNTQFCVKVLNPYMSSV 183 (257)
T ss_dssp TTTSC--CCCCSEEEECCCCC-CSS-----HHH------------HH-HHHHHHHHHHHHHCCTTCEEEEEESCCCSHHH
T ss_pred HHhcC--CCcCCEEEeeCCCC-CCC-----chh------------hh-hhHHHHHHHHHHHcccCCEEEEEECCCCChHH
Confidence 33333 37899999973100 000 000 00 01136788888999999998874433333334
Q ss_pred HHHH
Q psy2395 541 RKLL 544 (570)
Q Consensus 541 ~~ll 544 (570)
.+.|
T Consensus 184 ~e~l 187 (257)
T d2p41a1 184 IEKM 187 (257)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=0.00026 Score=69.88 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=48.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN 462 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~ 462 (570)
.+..|||+|.|.|.++..|..... ..+|+++|+++..++..+.... +.++.++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE------GSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT------TSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc------CCCcEEEeCchhh
Confidence 467899999999999999987652 2589999999999998876542 3468999999864
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.12 E-value=0.00022 Score=67.26 Aligned_cols=89 Identities=18% Similarity=0.212 Sum_probs=61.7
Q ss_pred EEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 454 KFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 454 ~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.+++||.++.+... ++++|+|+++|||...... ++ ......+-++++..++.++.++|+|+|.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~--------~d---~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKAD--------WD---SFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSG--------GG---CCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCc--------Cc---CCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 38899998865433 4789999999999643211 00 000111123456778999999999999998776
Q ss_pred cCCCHHHHHHHHHHCCCeeEE
Q psy2395 533 GYNQSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 533 ~~~~~~~l~~ll~~~Gf~~i~ 553 (570)
.......+...+...||....
T Consensus 75 ~~~~~~~~~~~~~~~g~~~~~ 95 (256)
T d1g60a_ 75 TPFNCAFICQYLVSKGMIFQN 95 (256)
T ss_dssp CHHHHHHHHHHHHHTTCEEEE
T ss_pred Cchhhhhhhhhhhcccceeee
Confidence 666667778888889987543
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=97.07 E-value=0.00043 Score=65.08 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
..|++.++.....++..|||.+||||..++++.+.+ -+.+|+|++++.++.|++++.
T Consensus 199 ~~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~---R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKLG---RNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHcC---CeEEEEeCCHHHHHHHHHHHc
Confidence 455666666656788999999999999999887665 589999999999999999875
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.0016 Score=63.85 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=84.3
Q ss_pred CCEEEEECCcccHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccccc-C-CCceeEE
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYSKNKIE-IIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQN-Y-KKLFNII 474 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~~~~~~-V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~-~-~~~fD~I 474 (570)
+.+|+|++||.|.+.+.+...+- ..+ |.++|+++.+++.-+.|... ..++++|+.+.... . ...+|++
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~~~--------~~~~~~di~~~~~~~~~~~~~Dll 72 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNFPH--------TQLLAKTIEGITLEEFDRLSFDMI 72 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCTT--------SCEECSCGGGCCHHHHHHHCCSEE
T ss_pred CCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHCCC--------CCcccCchhhCCHhHcCCCCccEE
Confidence 56899999999999888866542 233 67999999999998887542 34677787543211 0 1368999
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhcc--ccCeEEEEEE-cC----CCHHHHHHHHHHC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYL--VKNGLLLIEH-GY----NQSNLVRKLLFKY 547 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~L--kpgG~l~~~~-~~----~~~~~l~~ll~~~ 547 (570)
+.-||--..+...... . ..+++ . ..+..+++.+. .+ +|. ++++|- +. ...+.+.+.|++.
T Consensus 73 ~ggpPCq~fS~ag~~~-~-~~d~r-------~--~l~~~~~~~i~-~~~~kPk-~~i~ENV~~l~~~~~~~~i~~~l~~~ 139 (343)
T d1g55a_ 73 LMSPPCQPFTRIGRQG-D-MTDSR-------T--NSFLHILDILP-RLQKLPK-YILLENVKGFEVSSTRDLLIQTIENC 139 (343)
T ss_dssp EECCC-----------------------------CHHHHHHHHGG-GCSSCCS-EEEEEEETTGGGSHHHHHHHHHHHHT
T ss_pred Eeeccccccccccccc-c-ccccc-------c--cccchhhhhHh-hhcCCCc-eeeeeccCCcccchhhHHHHhhhhcc
Confidence 9999854322100000 0 00010 0 12344444333 33 565 455653 22 2246678888999
Q ss_pred CCeeEEEEecC------CCCceEEE
Q psy2395 548 GFSDIKSWRDL------SGIERVTQ 566 (570)
Q Consensus 548 Gf~~i~~~~D~------~g~~R~~~ 566 (570)
||......-+. +.+.|+++
T Consensus 140 GY~v~~~vlna~dyGvPQ~R~Rvfi 164 (343)
T d1g55a_ 140 GFQYQEFLLSPTSLGIPNSRLRYFL 164 (343)
T ss_dssp TEEEEEEEECGGGGTCSCCCCEEEE
T ss_pred ccccceeeeeccccCCcccceeEEE
Confidence 99865433322 56678754
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.83 E-value=0.0058 Score=59.40 Aligned_cols=145 Identities=12% Similarity=0.122 Sum_probs=87.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEE
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVA 476 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~ 476 (570)
.+.+|+|++||.|.+++.|.+.+ ---|.++|+++.+++.-+.|... ..++|+.+.....-..+|+++.
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG--~~~v~a~e~d~~a~~~~~~N~~~----------~~~~Di~~~~~~~~~~~Dll~g 77 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGE----------KPEGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSC----------CCBSCGGGSCGGGSCCCSEEEE
T ss_pred CCCeEEEECccccHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHCCC----------CCcCchhcCchhhcceeeeeec
Confidence 56899999999999999987665 23567899999999999988752 1247876543332357999999
Q ss_pred CCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE-cC----CC---HHHHHHHHHHCC
Q psy2395 477 NPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH-GY----NQ---SNLVRKLLFKYG 548 (570)
Q Consensus 477 NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~-~~----~~---~~~l~~ll~~~G 548 (570)
-||--+.+....... ..+|+. ..+..+++. .+.++|. ++++|- +. .. ...+...|.+.|
T Consensus 78 gpPCq~fS~ag~~~g--~~d~r~---------~l~~~~~~~-i~~~kP~-~~~lENV~~~~~~~~~~~~~~i~~~l~~lG 144 (327)
T d2c7pa1 78 GFPCQAFSISGKQKG--FEDSRG---------TLFFDIARI-VREKKPK-VVFMENVKNFASHDNGNTLEVVKNTMNELD 144 (327)
T ss_dssp ECCCTTTCTTSCCCG--GGSTTS---------CHHHHHHHH-HHHHCCS-EEEEEEEGGGGTGGGGHHHHHHHHHHHHTT
T ss_pred ccccchhhhhhhhcC--Ccccch---------hHHHHHHHH-HhccCCc-EEecccchhhhhhccchhhHHhhhHHHhcC
Confidence 998544321100000 011111 133444443 3467785 455543 21 11 355677888899
Q ss_pred CeeEEEEec---C---CCCceEEE
Q psy2395 549 FSDIKSWRD---L---SGIERVTQ 566 (570)
Q Consensus 549 f~~i~~~~D---~---~g~~R~~~ 566 (570)
|......-+ + +.+.|+++
T Consensus 145 Y~~~~~vl~a~~~GvPQ~R~R~fi 168 (327)
T d2c7pa1 145 YSFHAKVLNALDYGIPQKRERIYM 168 (327)
T ss_dssp BCCEEEEEEGGGGTCSBCCEEEEE
T ss_pred CcceeeEecHHHcCCCchhhhhee
Confidence 876443322 2 44567654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.81 E-value=0.00052 Score=66.60 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~ 443 (570)
..|++.++....+++..|||.+||||..++++.+.+ .+.+|+|+++++++.|++++.
T Consensus 237 ~~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lg---R~~Ig~El~~~y~~~a~~Rl~ 293 (320)
T d1booa_ 237 AKLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERES---RKWISFEMKPEYVAASAFRFL 293 (320)
T ss_dssp THHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTT---CEEEEEESCHHHHHHHHGGGS
T ss_pred hHHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHcC---CcEEEEeCCHHHHHHHHHHHH
Confidence 445566666556788999999999999999887664 589999999999999988765
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.79 E-value=0.00097 Score=63.39 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Q psy2395 384 ELLVDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKK 444 (570)
Q Consensus 384 ~~l~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~ 444 (570)
..|++.++.....++..|||.+||||..+++..+.+ -+.+|+|+++..++.|++++..
T Consensus 194 ~~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lg---R~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 194 AAVIERLVRALSHPGSTVLDFFAGSGVTARVAIQEG---RNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHT---CEEEEEESSTHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhC---CeEEEEeCCHHHHHHHHHHHHH
Confidence 456666666556788999999999999999988775 4899999999999999999875
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.68 E-value=0.0022 Score=60.84 Aligned_cols=86 Identities=14% Similarity=0.167 Sum_probs=59.4
Q ss_pred EEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 454 KFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 454 ~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
.|+.||.++.+... ++++|+|+++|||...... .....+-++....++.++.++|+|+|.+++-.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~--------------~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLAD--------------WDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGG--------------GGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCccc--------------ccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 47889998866543 4799999999999642110 01122335677889999999999999998865
Q ss_pred cCC---------CHHHHHHHHHHCCCeeEE
Q psy2395 533 GYN---------QSNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 533 ~~~---------~~~~l~~ll~~~Gf~~i~ 553 (570)
+.. ....+..++...||....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (279)
T d1eg2a_ 72 GLQYQGEAGSGDLISIISHMRQNSKMLLAN 101 (279)
T ss_dssp CSCCCCCTTBCCHHHHHHHHHHHCCCEEEE
T ss_pred CccccccccccchhhHHHHHHhccCceeee
Confidence 432 134556667778887643
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.46 E-value=0.0033 Score=60.79 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=55.7
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECC
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANP 478 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NP 478 (570)
.+|+|++||.|.+.+.+-+.+ --.+.++|+++.+++.-+.|.. -.++.+|+.+.....-..+|+++.-|
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG--~~~~~a~e~d~~a~~~~~~N~~---------~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNHS---------AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHT--CEEEEEEECCHHHHHHHHHHCC---------SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred CeEEEeCcCcCHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHCC---------CCCccCChhhCCHhHcccccEEeecc
Confidence 379999999999998887665 2356799999999998887753 24678998764333225799999999
Q ss_pred CCCC
Q psy2395 479 PYIP 482 (570)
Q Consensus 479 Py~~ 482 (570)
|--+
T Consensus 70 PCq~ 73 (324)
T d1dcta_ 70 PCQS 73 (324)
T ss_dssp CCTT
T ss_pred cccc
Confidence 8544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.26 E-value=0.026 Score=49.13 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=37.3
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.+++.+||-+||| .|.+++.+++.. +++|+++|.++.-++.|++.
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~ 69 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC 69 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc
Confidence 4678899999998 677777778776 57999999999999998763
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.012 Score=51.42 Aligned_cols=46 Identities=20% Similarity=0.041 Sum_probs=38.4
Q ss_pred cCCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 394 TFEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 394 ~~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
..+++.+|+-+||| .|.+++.+++.. +++|+++|.+++.++.|++.
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~l 70 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM 70 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhcc
Confidence 34678899999998 777888888776 58999999999999888753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.87 E-value=0.0029 Score=61.01 Aligned_cols=88 Identities=11% Similarity=0.233 Sum_probs=58.0
Q ss_pred EEEEEcccccccccC-CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 453 IKFIKSNWYNNLQNY-KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 453 v~~~~~D~~~~l~~~-~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
-.+++||.++.+... ++++|+|+++|||....+..... ....+-++.+...+..+++.|+|+|.+++.
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~-----------~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGN-----------LEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCS-----------CHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCC-----------CCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 479999998765433 47999999999997543221000 011122456778899999999999999986
Q ss_pred EcCC-----------CHHHHHHHHHHCCCee
Q psy2395 532 HGYN-----------QSNLVRKLLFKYGFSD 551 (570)
Q Consensus 532 ~~~~-----------~~~~l~~ll~~~Gf~~ 551 (570)
++.. ....+...+...|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (320)
T d1booa_ 82 FGGAYMKGVPARSIYNFRVLIRMIDEVGFFL 112 (320)
T ss_dssp ECCCEETTEEEECCHHHHHHHHHHHTTCCEE
T ss_pred ccchhhcccccccchhHHHHHHHHHhcCceE
Confidence 6542 1234455666677644
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=94.48 E-value=0.021 Score=50.25 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=36.6
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+++.+||=+|||. |.+++.+++... ..+|+++|.++.-++.|++
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~ 70 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKF 70 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHH
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHh
Confidence 46788899899986 788888888653 2479999999999999875
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.41 E-value=0.073 Score=46.70 Aligned_cols=45 Identities=22% Similarity=0.170 Sum_probs=36.3
Q ss_pred CCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 396 ~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+++.+||-+||| .|.+++.+|+... ..+|+++|.++..++.|++.
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~l 72 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEI 72 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHT
T ss_pred CCCCEEEEECCCccchhheecccccc-cccccccccccccccccccc
Confidence 467899999998 4777888888763 23899999999999988653
|
| >d2dpma_ c.66.1.28 (A:) DNA methylase DpnM {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N6 adenine-specific DNA methylase, DAM domain: DNA methylase DpnM species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.37 E-value=0.24 Score=46.23 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHhhcCCCCCEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHH
Q psy2395 387 VDLIVKKTFEKKIKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFAL 435 (570)
Q Consensus 387 ~~~~~~~~~~~~~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al 435 (570)
+.++...+++...+.+|+.||+|++.+.+. + .+++.-|+++..+
T Consensus 16 ~~~i~~~~p~~~~~yvEpF~Gggav~~~~~---~--~~~viND~n~~li 59 (275)
T d2dpma_ 16 LPVIRELIPKTYNRYFEPFVGGGALFFDLA---P--KDAVINDFNAELI 59 (275)
T ss_dssp HHHHHHHSCSSCSCEEETTCTTCHHHHHHC---C--SEEEEEESCHHHH
T ss_pred HHHHHHhcCcccCEEEeeCCCHHHHHhhhc---c--CcEEEEeCCHHHH
Confidence 345555555445689999999999988764 3 4788999998653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.17 E-value=0.042 Score=47.53 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=35.5
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+++.+|+=+||| .|.+++.+++.. +++|+++|.++.-++.+++
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~ 69 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK 69 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc
Confidence 4678889999987 466677777776 5899999999999988875
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.023 Score=49.77 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=62.3
Q ss_pred CCCCCEEEEECC--cccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEE---cccccccc--cC
Q psy2395 395 FEKKIKLLEMGT--GSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIK---SNWYNNLQ--NY 467 (570)
Q Consensus 395 ~~~~~~VLDlGc--GtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~---~D~~~~l~--~~ 467 (570)
.+++.+||-.|+ |.|..++.+|+.. +++|++++.+++..+.+++. +.. .++. .|+.+.+. ..
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~~--------Ga~-~vi~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQN--------GAH-EVFNHREVNYIDKIKKYVG 94 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT--------TCS-EEEETTSTTHHHHHHHHHC
T ss_pred CCCCCEEEEEecccccccccccccccc--Cccccccccccccccccccc--------Ccc-cccccccccHHHHhhhhhc
Confidence 357889999996 4777888888876 58999999999888777642 221 1221 22222211 11
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
...||+|+.+.. ...++.+.++|+|+|.++..
T Consensus 95 ~~g~d~v~d~~g--------------------------------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 95 EKGIDIIIEMLA--------------------------------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp TTCEEEEEESCH--------------------------------HHHHHHHHHHEEEEEEEEEC
T ss_pred cCCceEEeeccc--------------------------------HHHHHHHHhccCCCCEEEEE
Confidence 356999997320 23566777899999998863
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.45 E-value=0.05 Score=46.92 Aligned_cols=45 Identities=24% Similarity=0.313 Sum_probs=34.6
Q ss_pred cCCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 394 TFEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 394 ~~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..+++.+||=.|||+ |.+++.+++.. +++|+++|.++.-++.+++
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE 69 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh
Confidence 346788999999985 44555666664 5799999999999988865
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.45 E-value=0.22 Score=43.13 Aligned_cols=96 Identities=22% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc---ccccccc-cCCC
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS---NWYNNLQ-NYKK 469 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~---D~~~~l~-~~~~ 469 (570)
.+++.+||=+|||. |..++.+++... ...|+.+|.++.-++.|++.-. ..++.. |+.+.+. ..++
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~Ga---------~~~i~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQLGA---------THVINSKTQDPVAAIKEITDG 95 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHHTC---------SEEEETTTSCHHHHHHHHTTS
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHcCC---------eEEEeCCCcCHHHHHHHHcCC
Confidence 46788999999973 445666666553 4578899999999998876411 123322 2222111 1135
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
.||+|+-... . ...++.+.+.++|+|.+++.
T Consensus 96 g~D~vid~~G------------------------~-------~~~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 96 GVNFALESTG------------------------S-------PEILKQGVDALGILGKIAVV 126 (174)
T ss_dssp CEEEEEECSC------------------------C-------HHHHHHHHHTEEEEEEEEEC
T ss_pred CCcEEEEcCC------------------------c-------HHHHHHHHhcccCceEEEEE
Confidence 7999987321 0 35566778899999998763
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.81 E-value=0.3 Score=41.89 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=35.6
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
.+++.+||=+||| .|.+++.+++.. +++++++|.++.-++.+++
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~ 72 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA 72 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc
Confidence 4678899999987 477778888876 5788999999998887764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=92.13 E-value=0.11 Score=45.15 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=60.3
Q ss_pred CCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc--ccc-cccc-CCCc
Q psy2395 396 EKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN--WYN-NLQN-YKKL 470 (570)
Q Consensus 396 ~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D--~~~-~l~~-~~~~ 470 (570)
+++.+||=+|||. |.+++.+++... ...|+++|.+++-++.+++.-. ..++..+ ..+ .... ....
T Consensus 31 ~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~ga---------~~~i~~~~~~~~~~~~~~~~~g 100 (172)
T d1h2ba2 31 YPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERLGA---------DHVVDARRDPVKQVMELTRGRG 100 (172)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHTTC---------SEEEETTSCHHHHHHHHTTTCC
T ss_pred CCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhccc---------ceeecCcccHHHHHHHhhCCCC
Confidence 5678999999985 444566666543 4689999999998888875321 1233221 111 1111 1246
Q ss_pred eeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 471 FNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 471 fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
+|+|+-... + ...++.+.+.|+++|++++
T Consensus 101 ~d~vid~~g------------------------~-------~~~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 101 VNVAMDFVG------------------------S-------QATVDYTPYLLGRMGRLII 129 (172)
T ss_dssp EEEEEESSC------------------------C-------HHHHHHGGGGEEEEEEEEE
T ss_pred ceEEEEecC------------------------c-------chHHHHHHHHHhCCCEEEE
Confidence 999987421 0 3467788889999999986
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.07 E-value=0.43 Score=40.94 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=60.4
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEc--ccccc---cc-cC
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKS--NWYNN---LQ-NY 467 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~--D~~~~---l~-~~ 467 (570)
.+++.+|+=+|||. |.+++.+++... ..+|+++|.++.-++.|++. +........ |..+. +. ..
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~--------Ga~~~~~~~~~~~~~~~~~~~~~~ 94 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI--------GADLVLQISKESPQEIARKVEGQL 94 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT--------TCSEEEECSSCCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh--------CCcccccccccccccccccccccC
Confidence 46778999999984 455566666653 34899999999999988753 211111111 11110 00 11
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
...+|+|+-.-+ . ...++.+.+++++||.+++
T Consensus 95 g~g~Dvvid~~G------------------------~-------~~~~~~a~~~~~~gG~iv~ 126 (171)
T d1pl8a2 95 GCKPEVTIECTG------------------------A-------EASIQAGIYATRSGGTLVL 126 (171)
T ss_dssp TSCCSEEEECSC------------------------C-------HHHHHHHHHHSCTTCEEEE
T ss_pred CCCceEEEeccC------------------------C-------chhHHHHHHHhcCCCEEEE
Confidence 246899887321 0 3567778889999999877
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=92.02 E-value=0.33 Score=42.13 Aligned_cols=46 Identities=26% Similarity=0.159 Sum_probs=38.1
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.+++.+|+=+|||. |.+++.+++... ..+|+.+|.++.-++.|++.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~ 72 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKAL 72 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHh
Confidence 36788999999997 888888888763 35899999999988888764
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.93 E-value=0.4 Score=41.02 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=61.3
Q ss_pred CCCCCEEEEECC-c-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccc---ccc--cC
Q psy2395 395 FEKKIKLLEMGT-G-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYN---NLQ--NY 467 (570)
Q Consensus 395 ~~~~~~VLDlGc-G-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~---~l~--~~ 467 (570)
.+++.+||=+|| | .|.+++.+++... ..+|+++|.++.-++.+++.- .. .++..+-.+ ... ..
T Consensus 25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~G--------a~-~~i~~~~~~~~~~~~~~~~ 94 (170)
T d1jvba2 25 LDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRAG--------AD-YVINASMQDPLAEIRRITE 94 (170)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHHT--------CS-EEEETTTSCHHHHHHHHTT
T ss_pred CCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHcC--------Cc-eeeccCCcCHHHHHHHHhh
Confidence 467889999997 3 5566666666553 469999999999998887641 11 222222211 111 11
Q ss_pred CCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 468 KKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 468 ~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
...||+|+-..+ + ...++.+.+.|+|+|.+++.
T Consensus 95 ~~~~d~vid~~g------------------------~-------~~~~~~a~~~l~~~G~iv~~ 127 (170)
T d1jvba2 95 SKGVDAVIDLNN------------------------S-------EKTLSVYPKALAKQGKYVMV 127 (170)
T ss_dssp TSCEEEEEESCC------------------------C-------HHHHTTGGGGEEEEEEEEEC
T ss_pred cccchhhhcccc------------------------c-------chHHHhhhhhcccCCEEEEe
Confidence 246999887321 0 35566778899999998763
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.38 Score=44.53 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=57.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+++.+|=.|+++| ++..+|+.+ ..+++|+.+|.+++.++.+.+.+...+ ...++.++.+|+.+.-. .
T Consensus 9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~~~Dls~~~~v~~~v~~~~~ 85 (257)
T d1xg5a_ 9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--YPGTLIPYRCDLSNEEDILSMFSAIRS 85 (257)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 4668888887766 555555433 236899999999999988877766521 23468889999965311 1
Q ss_pred CCCceeEEEECCCCCCC
Q psy2395 467 YKKLFNIIVANPPYIPK 483 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~ 483 (570)
..++.|++|.|..+...
T Consensus 86 ~~g~iD~lVnnAg~~~~ 102 (257)
T d1xg5a_ 86 QHSGVDICINNAGLARP 102 (257)
T ss_dssp HHCCCSEEEECCCCCCC
T ss_pred hcCCCCEEEecccccCC
Confidence 11679999999765543
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=90.77 E-value=0.23 Score=46.34 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=81.6
Q ss_pred EEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---cCCCceeEEEECC
Q psy2395 402 LEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---NYKKLFNIIVANP 478 (570)
Q Consensus 402 LDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---~~~~~fD~Iv~NP 478 (570)
+...+||-.++..+.+. .-+.+.+|+.|.-.+..++|+. ...++.+...|.++.+. .+..+--+|+.+|
T Consensus 87 l~~YPGSP~ia~~llR~---~Drl~l~ELHp~e~~~L~~~~~-----~~~~~~v~~~DG~~~l~allPP~~rRgLVLIDP 158 (271)
T d2oo3a1 87 LSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPH-----FNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 158 (271)
T ss_dssp CCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCC-----TTSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred cCcCCCCHHHHHHhCCC---CCceEEeecCHHHHHHHHHHhc-----cCCCceEEcCchHHHHHhhCCCCCCceEEEecC
Confidence 46789999988877743 4589999999999988887765 35679999999987542 2235667999999
Q ss_pred CCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccc--cCeEEEEEEcCCC---HHHHHHHHHHCCCeeEE
Q psy2395 479 PYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLV--KNGLLLIEHGYNQ---SNLVRKLLFKYGFSDIK 553 (570)
Q Consensus 479 Py~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~---~~~l~~ll~~~Gf~~i~ 553 (570)
||-..+ .|.++++.+.+.++ |.|.+++=.|--. ...+.+-+.+.|...+.
T Consensus 159 pYE~k~-------------------------ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~~~~~k~l~ 213 (271)
T d2oo3a1 159 SYERKE-------------------------EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISSKSVR 213 (271)
T ss_dssp CCCSTT-------------------------HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCSSEEE
T ss_pred CcCCHH-------------------------HHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHHhcCcccee
Confidence 996433 34555555544444 6787766444333 44455556666765543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.54 E-value=0.44 Score=41.13 Aligned_cols=71 Identities=17% Similarity=0.173 Sum_probs=49.8
Q ss_pred CCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEE
Q psy2395 397 KKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIV 475 (570)
Q Consensus 397 ~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv 475 (570)
++.+|+=+|+| .|..++..|+.. +++|+.+|.+++.++..+..... ++.+...+-.. +...-...|+||
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~~-------~~~~~~~~~~~-l~~~~~~aDivI 100 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-------RVELLYSNSAE-IETAVAEADLLI 100 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-------GSEEEECCHHH-HHHHHHTCSEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhcc-------cceeehhhhhh-HHHhhccCcEEE
Confidence 56899999999 566777788776 68999999999999877665442 24555544311 211114689999
Q ss_pred EC
Q psy2395 476 AN 477 (570)
Q Consensus 476 ~N 477 (570)
+-
T Consensus 101 ~a 102 (168)
T d1pjca1 101 GA 102 (168)
T ss_dssp EC
T ss_pred Ee
Confidence 83
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.37 E-value=1.2 Score=37.82 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=55.8
Q ss_pred EEEEECCcc--cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEEC
Q psy2395 400 KLLEMGTGS--GAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVAN 477 (570)
Q Consensus 400 ~VLDlGcGt--G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~N 477 (570)
+|+=+|||. |.++..|.+.+. ..+|+|+|.+++.++.|+++-. +.....+... .. ....|+|+..
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~~~~~~a~~~~~---------~~~~~~~~~~-~~--~~~~dlIila 69 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINPESISKAVDLGI---------IDEGTTSIAK-VE--DFSPDFVMLS 69 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCHHHHHHHHHTTS---------CSEEESCGGG-GG--GTCCSEEEEC
T ss_pred EEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECChHHHHHHHHhhc---------chhhhhhhhh-hh--cccccccccc
Confidence 477788863 223334444433 4689999999999998876421 1112222211 11 1357999886
Q ss_pred CCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCH
Q psy2395 478 PPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQS 537 (570)
Q Consensus 478 PPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 537 (570)
.|- ..+..++..+..+++++-.+ +.++....
T Consensus 70 ~p~----------------------------~~~~~vl~~l~~~~~~~~ii-~d~~s~k~ 100 (171)
T d2g5ca2 70 SPV----------------------------RTFREIAKKLSYILSEDATV-TDQGSVKG 100 (171)
T ss_dssp SCH----------------------------HHHHHHHHHHHHHSCTTCEE-EECCSCCT
T ss_pred CCc----------------------------hhhhhhhhhhhccccccccc-cccccccH
Confidence 441 24467777888888877544 44544333
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.96 E-value=0.36 Score=42.72 Aligned_cols=46 Identities=24% Similarity=0.205 Sum_probs=37.8
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.+++.+||-+|||. |.+++.+++... ..+|+++|.++..++.|++.
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~ 69 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ 69 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc
Confidence 46788999999997 667777777653 56999999999999988754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.49 E-value=0.14 Score=44.42 Aligned_cols=44 Identities=20% Similarity=0.059 Sum_probs=35.9
Q ss_pred CCCCEEEEECCc--ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 396 EKKIKLLEMGTG--SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 396 ~~~~~VLDlGcG--tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
+++.+||=.|+| .|.+++.+|+.. +++|++++.|++-.+.+++.
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~l 72 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA 72 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhc
Confidence 567888888555 577888888876 58999999999999888753
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.89 E-value=0.3 Score=42.18 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCCCEEEEECC-c-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGT-G-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKK 440 (570)
Q Consensus 395 ~~~~~~VLDlGc-G-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~ 440 (570)
..++.+||=.|. | .|.+++.+++.. +++|++++.+++.++.+++
T Consensus 25 ~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~ 70 (171)
T d1iz0a2 25 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA 70 (171)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH
T ss_pred CCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc
Confidence 357889998884 3 467788888876 5899999999988877764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=87.57 E-value=0.73 Score=42.40 Aligned_cols=80 Identities=14% Similarity=0.057 Sum_probs=56.2
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+++++|=-|. ++.++..+|+.+ ..+++|+.+|.+++.++.+.+.+.. .+.++.++.+|+.+... .
T Consensus 10 ~gK~alITGa-s~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~----~g~~~~~~~~Dvs~~~~~~~~~~~~~~ 84 (255)
T d1fmca_ 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ----LGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH----TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH----cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4566766554 455666666543 3468999999999999888877775 35578899999965311 1
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-++.|++|.|..+.
T Consensus 85 ~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 85 KLGKVDILVNNAGGG 99 (255)
T ss_dssp HHSSCCEEEECCCCC
T ss_pred HcCCCCEeeeCCcCC
Confidence 016899999997654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=87.42 E-value=2.1 Score=39.21 Aligned_cols=81 Identities=15% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc----------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL----------Q 465 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l----------~ 465 (570)
+++++|=.|+..| ++.++++.+ ..+++|+.+|.+++.++.+.+.+.. .+..+.++.+|+.+.- .
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~----~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE----KGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----cCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 4678888888655 555444332 2357999999999998888877765 4567889999986531 1
Q ss_pred cCCCceeEEEECCCCCC
Q psy2395 466 NYKKLFNIIVANPPYIP 482 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~ 482 (570)
...+..|+++.|.....
T Consensus 80 ~~~g~idilinnag~~~ 96 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVI 96 (258)
T ss_dssp HTTSCCCEEEECCCCCC
T ss_pred HhCCCcEEEeccccccc
Confidence 22357899999876544
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=87.15 E-value=1.3 Score=42.88 Aligned_cols=47 Identities=13% Similarity=0.274 Sum_probs=35.8
Q ss_pred CCCEEEEECCcccHHHHHHHHhcC------CCcEEEEEeCCHHHHHHHHHHHH
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYSK------NKIEIIATDISKFALKIAKKNAK 443 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~~------~~~~V~gvDis~~al~~A~~n~~ 443 (570)
++..|+|+|+|+|.++.-+.+... ...+++-+|.|+...+.-++++.
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 445899999999999887765432 24679999999987777766654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.00 E-value=0.7 Score=37.72 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=44.2
Q ss_pred EEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEccccccc--ccC-CCceeEEE
Q psy2395 400 KLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNL--QNY-KKLFNIIV 475 (570)
Q Consensus 400 ~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l--~~~-~~~fD~Iv 475 (570)
+|+=+| .|.++..+++.+ ..+..|+.+|.|++.++.+.... .+.++.||..+.. ... -..+|.++
T Consensus 2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~---------~~~vi~Gd~~~~~~l~~~~i~~a~~vv 70 (132)
T d1lssa_ 2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI---------DALVINGDCTKIKTLEDAGIEDADMYI 70 (132)
T ss_dssp EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---------SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh---------hhhhccCcccchhhhhhcChhhhhhhc
Confidence 444444 578888877654 23578999999999988765431 2578999986532 111 15688888
Q ss_pred E
Q psy2395 476 A 476 (570)
Q Consensus 476 ~ 476 (570)
+
T Consensus 71 ~ 71 (132)
T d1lssa_ 71 A 71 (132)
T ss_dssp E
T ss_pred c
Confidence 7
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=86.93 E-value=1.3 Score=40.69 Aligned_cols=80 Identities=16% Similarity=0.181 Sum_probs=55.5
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+++.+|=-|.++| ++..+++.+ ..+++|+.+|.+++.++.+.+.+.. .+.++.++.+|+.+... .
T Consensus 4 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~----~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 4 NGKVCLVTGAGGN-IGLATALRLAEEGTAIALLDMNREALEKAEASVRE----KGVEARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHT----TTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4667887776655 555444332 2358999999999999988887765 45678899999865311 1
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-+..|++|.|..+.
T Consensus 79 ~~g~iDilVnnaG~~ 93 (260)
T d1zema1 79 DFGKIDFLFNNAGYQ 93 (260)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HhCCCCeehhhhccc
Confidence 116899999986543
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.64 E-value=0.27 Score=42.69 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=58.9
Q ss_pred CCCCEEEEEC--CcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEE--Eccccccccc--CCC
Q psy2395 396 EKKIKLLEMG--TGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFI--KSNWYNNLQN--YKK 469 (570)
Q Consensus 396 ~~~~~VLDlG--cGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~--~~D~~~~l~~--~~~ 469 (570)
+++.+||=.| .|.|.+++.+|+.. ++++++++-+++-.+.+++. +....+- ..|+.+.+.. ...
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~--------Ga~~vi~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRL--------GVEYVGDSRSVDFADEILELTDGY 93 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTT--------CCSEEEETTCSTHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccccc--------cccccccCCccCHHHHHHHHhCCC
Confidence 5678888876 35777888888876 58999999888877766532 2221121 1223222211 125
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.||+|+.... ...++.+.++|+++|+++.
T Consensus 94 g~d~v~d~~g--------------------------------~~~~~~~~~~l~~~G~~v~ 122 (183)
T d1pqwa_ 94 GVDVVLNSLA--------------------------------GEAIQRGVQILAPGGRFIE 122 (183)
T ss_dssp CEEEEEECCC--------------------------------THHHHHHHHTEEEEEEEEE
T ss_pred CEEEEEeccc--------------------------------chHHHHHHHHhcCCCEEEE
Confidence 7999998321 1244566779999999876
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.15 E-value=0.87 Score=42.15 Aligned_cols=125 Identities=10% Similarity=0.033 Sum_probs=73.8
Q ss_pred CCEEEEECCcccHHHHHHHHhc-C-CCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 398 KIKLLEMGTGSGAIAIAIAIYS-K-NKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 398 ~~~VLDlGcGtG~i~l~la~~~-~-~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+++|.=|--|++.|+..+|+.+ . .+++|+.++.+++.++.+.+.++. .+.++.++..|+.+... .
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~----~~~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA----EGLSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH----TTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEEEecCCHHHHHHHHHHHHH
Confidence 4567555555666776666543 1 257999999999999988888775 35568899999865211 1
Q ss_pred CCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 467 YKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
..++.|++|.|.-........... ...++..+.. .+--...+.+.+..+|+++|.++...
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~-~~~~~~~~~v-----N~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPF-HIQAEVTMKT-----NFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCH-HHHHHHHHHH-----HTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred hcCCcEEEEEcCCcCCCCCcccCC-HHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCccccc
Confidence 116899999996543221110000 0000000000 01112356777778889999987653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.51 E-value=2.3 Score=35.96 Aligned_cols=46 Identities=26% Similarity=0.195 Sum_probs=35.4
Q ss_pred CCCCCEEEEECCc-ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTG-SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 395 ~~~~~~VLDlGcG-tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.+++.+||=.||| .|.+++.+++... ...|+++|.++.-++.+++.
T Consensus 26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~l 72 (176)
T d2fzwa2 26 LEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF 72 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHh
Confidence 4678899998887 4555666676653 46899999999999988864
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=84.94 E-value=1.4 Score=40.62 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=69.6
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCC-HHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDIS-KFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------- 465 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis-~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------- 465 (570)
+++++|=-|+++| ++.++++.+ ..+++|+.+|.+ ++.++.+...+.. .+.++.++.+|+.+...
T Consensus 17 ~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~----~g~~~~~~~~D~~~~~~v~~~~~~~~ 91 (272)
T d1g0oa_ 17 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK----NGSDAACVKANVGVVEDIVRMFEEAV 91 (272)
T ss_dssp TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH----TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHh----hCCceeeEeCCCCCHHHHHHHHHHHH
Confidence 4667887777666 444444332 235799999987 5566666666654 45578999999865211
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEE
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIE 531 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~ 531 (570)
...+..|++|.|..+........... +.....+. -.+.....+.+.+..+|+.+|.+++.
T Consensus 92 ~~~g~idilV~nag~~~~~~~~~~~~----~~~~~~~~--~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 92 KIFGKLDIVCSNSGVVSFGHVKDVTP----EEFDRVFT--INTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCH----HHHHHHHH--HHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHhCCCCccccccccchhhhhhhhhh----hHHHHHhh--hccceeeeeccccccccccccccccc
Confidence 11167999999976544332211110 00000000 01112344566666777878877664
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.50 E-value=3.4 Score=37.48 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=58.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+++.+|=-|+++| ++..+|+.+ ..+++|+.+|.+++.++.+...+.. .+.++.++.+|+.+... .
T Consensus 9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~----~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS----FGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT----TTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh----cCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3556777776555 777777654 3468999999999999988887764 45578999999965311 1
Q ss_pred CCCceeEEEECCCCCCC
Q psy2395 467 YKKLFNIIVANPPYIPK 483 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~~~ 483 (570)
.-++.|++|.|......
T Consensus 84 ~~g~iDilvnnag~~~~ 100 (251)
T d2c07a1 84 EHKNVDILVNNAGITRD 100 (251)
T ss_dssp HCSCCCEEEECCCCCCC
T ss_pred hcCCceeeeeccccccc
Confidence 12689999999765443
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=84.02 E-value=1.6 Score=37.50 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=60.8
Q ss_pred CCCCEEEEECCc--ccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcc--ccccc-c-cCCC
Q psy2395 396 EKKIKLLEMGTG--SGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSN--WYNNL-Q-NYKK 469 (570)
Q Consensus 396 ~~~~~VLDlGcG--tG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D--~~~~l-~-~~~~ 469 (570)
+++.+||=.|+| .|..++.+++.. +++|++++-+++.++.++..- ....+...| ..+.. . ....
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~G--------a~~vi~~~~~~~~~~~~~~~~~~ 97 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQIG--------FDAAFNYKTVNSLEEALKKASPD 97 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT--------CSEEEETTSCSCHHHHHHHHCTT
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHhhh--------hhhhcccccccHHHHHHHHhhcC
Confidence 578899987775 466778888876 689999999998887776542 222222222 11111 1 1124
Q ss_pred ceeEEEECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEE
Q psy2395 470 LFNIIVANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLI 530 (570)
Q Consensus 470 ~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~ 530 (570)
.+|+|+-.- | ...++.+.+.|+++|.+++
T Consensus 98 Gvd~v~D~v----------------------------G----~~~~~~~~~~l~~~G~~v~ 126 (182)
T d1v3va2 98 GYDCYFDNV----------------------------G----GEFLNTVLSQMKDFGKIAI 126 (182)
T ss_dssp CEEEEEESS----------------------------C----HHHHHHHGGGEEEEEEEEE
T ss_pred CCceeEEec----------------------------C----chhhhhhhhhccCCCeEEe
Confidence 699988621 1 3456788889999999876
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=82.77 E-value=1.6 Score=39.75 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=54.4
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------c
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ---------N 466 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~---------~ 466 (570)
+++++|=-|+++| ++..+|+.+ ..+++|+.+|.+++.++.+.+.+... .+.++.++.+|+.+... .
T Consensus 4 ~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 4 RGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK---YGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH---hCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4667888887765 555444332 23589999999999887776655432 35578899999865311 1
Q ss_pred CCCceeEEEECCCCC
Q psy2395 467 YKKLFNIIVANPPYI 481 (570)
Q Consensus 467 ~~~~fD~Iv~NPPy~ 481 (570)
.-++.|++|.|.-+.
T Consensus 80 ~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 016899999996544
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=82.63 E-value=0.87 Score=39.32 Aligned_cols=46 Identities=20% Similarity=0.158 Sum_probs=36.4
Q ss_pred CCCCCEEEEECCcc-cHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Q psy2395 395 FEKKIKLLEMGTGS-GAIAIAIAIYSKNKIEIIATDISKFALKIAKKN 441 (570)
Q Consensus 395 ~~~~~~VLDlGcGt-G~i~l~la~~~~~~~~V~gvDis~~al~~A~~n 441 (570)
.+++.+|+=+|||. |..++.+++... ..+|+++|.+++-++.|++.
T Consensus 27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~ 73 (176)
T d1d1ta2 27 VKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV 73 (176)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc
Confidence 46788999999984 455666666653 47999999999999999876
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=82.06 E-value=3.3 Score=34.95 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=64.1
Q ss_pred CEEEEECCcccHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEE----EEEcccccccccCCCceeEE
Q psy2395 399 IKLLEMGTGSGAIAIAIAIYSKNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIK----FIKSNWYNNLQNYKKLFNII 474 (570)
Q Consensus 399 ~~VLDlGcGtG~i~l~la~~~~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~----~~~~D~~~~l~~~~~~fD~I 474 (570)
++|.=+|+|....+++....- .+..|+.+|.++.-++..+.+-............ ....|..+.+ ..+|+|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~----~~aD~i 76 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV----KDADVI 76 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH----TTCSEE
T ss_pred CEEEEECccHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh----cCCCEE
Confidence 467778887655444332222 2579999999998887766543210000111111 1122221212 458888
Q ss_pred EECCCCCCCCCcccCCCCccccccccccccCCChHHHHHHHHHHhhccccCeEEEEEEcCC-CHHHHHHHHHHCCC
Q psy2395 475 VANPPYIPKGDIHLNKGDLRFEPINALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYN-QSNLVRKLLFKYGF 549 (570)
Q Consensus 475 v~NPPy~~~~~~~~~~~~~~~ep~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~l~~ll~~~Gf 549 (570)
+.--|- .....+++.+..+|+++-.+++..+.. ....+...+...+-
T Consensus 77 ii~v~~----------------------------~~~~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~~~~~ 124 (184)
T d1bg6a2 77 LIVVPA----------------------------IHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGA 124 (184)
T ss_dssp EECSCG----------------------------GGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTTC
T ss_pred EEEEch----------------------------hHHHHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHHHhcC
Confidence 873210 134678888899999988765433332 23445666666553
|
| >d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: Receiver domain of the ethylene receptor domain: Receiver domain of the ethylene receptor species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.02 E-value=11 Score=30.28 Aligned_cols=103 Identities=11% Similarity=0.102 Sum_probs=61.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccccCCCceeEEEECCCCCCCCCcccCCCCccccccccc
Q psy2395 422 KIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQNYKKLFNIIVANPPYIPKGDIHLNKGDLRFEPINAL 501 (570)
Q Consensus 422 ~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep~~al 501 (570)
+.+|.-||=++......+.-+.. .+..+. ...|..+.+......||+|+++--
T Consensus 7 g~rILvVDD~~~~~~~l~~~L~~----~G~~v~-~a~~g~eal~~l~~~~dlillD~~---------------------- 59 (134)
T d1dcfa_ 7 GLKVLVMDENGVSRMVTKGLLVH----LGCEVT-TVSSNEECLRVVSHEHKVVFMDVC---------------------- 59 (134)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHH----TTCEEE-EESSHHHHHHHCCTTCSEEEEECC----------------------
T ss_pred CCEEEEEeCCHHHHHHHHHHHHH----CCCEEE-EECCHHHHHHHhhcCCCeEEEEec----------------------
Confidence 57999999999999988888876 344443 345555555544568999999521
Q ss_pred cccCCChHHHHHHHHHHhhccccCeEEEEEEcCCCHHHHHHHHHHCCCeeE
Q psy2395 502 TDYSNGLSSIKEIVKNASKYLVKNGLLLIEHGYNQSNLVRKLLFKYGFSDI 552 (570)
Q Consensus 502 ~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~l~~ll~~~Gf~~i 552 (570)
-.+-+|++..+.+-+.....-.+.=.+++.++....+...+ +.+.|+..+
T Consensus 60 mP~~dG~el~~~ir~~~~~~~~~~~~ii~lT~~~~~~~~~~-~~~~G~~~~ 109 (134)
T d1dcfa_ 60 MPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEK-CMSFGLDGV 109 (134)
T ss_dssp SSTTTTTHHHHHHHHHHC-CCSCCCEEEEEESCCSHHHHHH-HHHTTCCEE
T ss_pred cCCCchHHHHHHHHHhcccccCCCCeEEEEeCCCCHHHHHH-HHHcCCCEE
Confidence 01235666666655433222222223444566666655544 446788654
|
| >d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: Spectrin repeat family: Spectrin repeat domain: Spectrin alpha chain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=80.54 E-value=9.3 Score=28.50 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHhhhhhHHHHHHHH
Q psy2395 5 MLSKLEKFSKRLKELDFLLTQKEVHNNIKDYCKKVREHSFLYPIVELYNNY 55 (570)
Q Consensus 5 ~~~~l~~~~~r~~~l~~~l~~p~~w~d~~~~~~l~ke~~~L~~~v~~~~~~ 55 (570)
++.+++.+..-+.+.+..+++++.=+|...++.+.+++..++.-+.....-
T Consensus 3 F~~~~~el~~Wl~e~~~~l~s~~~g~d~~~~~~ll~~h~~~~~~i~~~~~~ 53 (101)
T d1u5pa2 3 FFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPA 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 567888999999999999999888889999999999999999988887653
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.50 E-value=1.7 Score=39.52 Aligned_cols=128 Identities=16% Similarity=0.110 Sum_probs=69.2
Q ss_pred CCCEEEEECCccc-HHHHHHHHhc-CCCcEEEEEeCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------
Q psy2395 397 KKIKLLEMGTGSG-AIAIAIAIYS-KNKIEIIATDISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------- 465 (570)
Q Consensus 397 ~~~~VLDlGcGtG-~i~l~la~~~-~~~~~V~gvDis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------- 465 (570)
+++++|=-|++++ .++..+|+.+ ..+++|+..|.++...+.+.+.... ..+..++.+|+.+...
T Consensus 7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA-----LGGALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-----TTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc-----cCcccccccccCCHHHHHHHHHHHH
Confidence 4678898887552 2444444322 2257899999998887777666553 2346778899865311
Q ss_pred cCCCceeEEEECCCCCCCCCcccCCCCccccc-cccccccCCChHHHHHHHHHHhhccccCeEEEEEE
Q psy2395 466 NYKKLFNIIVANPPYIPKGDIHLNKGDLRFEP-INALTDYSNGLSSIKEIVKNASKYLVKNGLLLIEH 532 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~~~~~~~~~~~~~~ep-~~al~~~~~gl~~~~~~l~~~~~~LkpgG~l~~~~ 532 (570)
..-++.|++|.|-.+.+.........+...+. ...+. -.+.....+.+.+..+++++|.++...
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~---vn~~~~~~~~~~~~~~~~~~G~Iv~is 146 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALE---VSAYSLVAVARRAEPLLREGGGIVTLT 146 (256)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHH---HHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred HhcCCceEEEeccccccccccccchhhhhhhhhhHhhh---hhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 11168999998865443211000000000000 00000 001122345566677888899887654
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=80.38 E-value=1.8 Score=39.52 Aligned_cols=81 Identities=15% Similarity=0.066 Sum_probs=53.7
Q ss_pred CCCEEEEECCcccHHHHHHHHhc-CCCcEEEEE-eCCHHHHHHHHHHHHhhcccCCCCEEEEEcccccccc---------
Q psy2395 397 KKIKLLEMGTGSGAIAIAIAIYS-KNKIEIIAT-DISKFALKIAKKNAKKKLTKYNIPIKFIKSNWYNNLQ--------- 465 (570)
Q Consensus 397 ~~~~VLDlGcGtG~i~l~la~~~-~~~~~V~gv-Dis~~al~~A~~n~~~~~~~~~~~v~~~~~D~~~~l~--------- 465 (570)
.++++|=.| |++.++..+|+.+ ..+++|+.. +-+...++.+.+.+.. .+.++.++.+|+.+...
T Consensus 5 ~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~----~g~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 5 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKK----LGAQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH----TTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHH----cCCCceEecCCCCCHHHHHHHHHHHH
Confidence 466788666 5565666665443 235778764 5677778888887775 45678999999865211
Q ss_pred cCCCceeEEEECCCCCC
Q psy2395 466 NYKKLFNIIVANPPYIP 482 (570)
Q Consensus 466 ~~~~~fD~Iv~NPPy~~ 482 (570)
...+..|++|.|.....
T Consensus 80 ~~~g~idilinnag~~~ 96 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEV 96 (259)
T ss_dssp HHHSCEEEEECCCCCCC
T ss_pred HHcCCCcEEEecccccc
Confidence 11267999999976543
|