Psyllid ID: psy2405

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI
cHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEcccHHHHHHHHHHHHHHcccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEccccccccccccccccEEEEEEEEccEEEHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccEEEEcccHHHcccHHHHHHHHHcccccccccEEEccccccccccccccEEEEcccccccccccccc
cHHHHHHHHHHHHHcEEEEcccccEEEEEEEEEEEEEHHHccccccccccccHHHHHHHHHHHHcccEcHHHHHccccccHHHcccccEccccHHHHHHHEEcccccEEcHHHHHHHHHHHcccccccEEEcccHHHHHHccccccEEEEEEEEEccEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEEEEHHHHHHHHHHHccccccccEEEEccccccHHHccHHHEEEEcccccccccccccc
MHQYLNFMRHVYNSGikkidrtgvgtLSIFGYQMRFnlqkgfpllttkklHVKSIIYELIWFLSgstninflkknNIKIWDQWadengdlgpiygyqwrswptlqgKYIDQLSGVIKQiktdpnsrriivsawnvsdihkmklppchiLFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHEtglkvgdfiwtggdchLYLNHLDQARKQLlrnpgslpnltilckpkssldynfedfqinsynpqksiyapiai
MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKqiktdpnsrrIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQinsynpqksiyapiai
MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTninflkknnikiWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI
***YLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYN***********
MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI
MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI
MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAP***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query264 2.2.26 [Sep-21-2011]
Q0K889264 Thymidylate synthase OS=C yes N/A 1.0 1.0 0.647 1e-109
Q8Y0U6264 Thymidylate synthase OS=R yes N/A 1.0 1.0 0.647 1e-107
A5II41264 Thymidylate synthase OS=L yes N/A 1.0 1.0 0.655 1e-106
Q5X119264 Thymidylate synthase OS=L yes N/A 1.0 1.0 0.655 1e-106
Q5WSU5264 Thymidylate synthase OS=L yes N/A 1.0 1.0 0.651 1e-106
Q1LK81264 Thymidylate synthase OS=R yes N/A 1.0 1.0 0.640 1e-106
Q5ZRL3264 Thymidylate synthase OS=L yes N/A 1.0 1.0 0.647 1e-106
B7LNI2264 Thymidylate synthase OS=E yes N/A 1.0 1.0 0.647 1e-106
A7MR31264 Thymidylate synthase OS=C yes N/A 1.0 1.0 0.651 1e-105
A4WE03264 Thymidylate synthase OS=E yes N/A 1.0 1.0 0.632 1e-105
>sp|Q0K889|TYSY_CUPNH Thymidylate synthase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=thyA PE=3 SV=2 Back     alignment and function desciption
 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 171/264 (64%), Positives = 218/264 (82%)

Query: 1   MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
           M QYL+FMRHVY  G  K DRTG GT S+FGYQMRF+L+ GFP++TTKKLH+KSIIYEL+
Sbjct: 1   MKQYLDFMRHVYEHGTDKADRTGTGTRSVFGYQMRFDLRAGFPVVTTKKLHLKSIIYELL 60

Query: 61  WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
           WFL GSTN+ +L+++ + IWD+WADENG+LGP+YG QWRSWPT  G++IDQ++ ++ QI+
Sbjct: 61  WFLQGSTNVRWLQEHGVTIWDEWADENGELGPVYGSQWRSWPTPDGRHIDQITDLVAQIR 120

Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
            +P+SRR+IVSAWNV+DI +MKLPPCH  FQFYVA+ +LSCQLYQRSADIFLG+PFNIAS
Sbjct: 121 ANPDSRRLIVSAWNVADIPRMKLPPCHAFFQFYVADGRLSCQLYQRSADIFLGVPFNIAS 180

Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
           Y+LL H++A +TGL+VGDF+WTGGDCHLY NH +Q + QL R P +LP L IL KP S  
Sbjct: 181 YALLTHMMAQQTGLEVGDFVWTGGDCHLYNNHFEQVQTQLAREPLALPQLKILRKPDSIF 240

Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
           DY +EDF++  Y    +I AP+A+
Sbjct: 241 DYRYEDFELAGYQSHAAIKAPVAV 264
Provides the sole de novo source of dTMP for DNA biosynthesis.
Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 5
>sp|Q8Y0U6|TYSY_RALSO Thymidylate synthase OS=Ralstonia solanacearum (strain GMI1000) GN=thyA PE=3 SV=1 Back     alignment and function description
>sp|A5II41|TYSY_LEGPC Thymidylate synthase OS=Legionella pneumophila (strain Corby) GN=thyA PE=3 SV=1 Back     alignment and function description
>sp|Q5X119|TYSY_LEGPA Thymidylate synthase OS=Legionella pneumophila (strain Paris) GN=thyA PE=3 SV=1 Back     alignment and function description
>sp|Q5WSU5|TYSY_LEGPL Thymidylate synthase OS=Legionella pneumophila (strain Lens) GN=thyA PE=3 SV=1 Back     alignment and function description
>sp|Q1LK81|TYSY_RALME Thymidylate synthase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=thyA PE=3 SV=1 Back     alignment and function description
>sp|Q5ZRL3|TYSY_LEGPH Thymidylate synthase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=thyA PE=3 SV=1 Back     alignment and function description
>sp|B7LNI2|TYSY_ESCF3 Thymidylate synthase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=thyA PE=3 SV=1 Back     alignment and function description
>sp|A7MR31|TYSY_CROS8 Thymidylate synthase OS=Cronobacter sakazakii (strain ATCC BAA-894) GN=thyA PE=3 SV=1 Back     alignment and function description
>sp|A4WE03|TYSY_ENT38 Thymidylate synthase OS=Enterobacter sp. (strain 638) GN=thyA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
399017507264 thymidylate synthase [Herbaspirillum sp. 1.0 1.0 0.693 1e-113
329911715264 Thymidylate synthase [Oxalobacteraceae b 1.0 1.0 0.681 1e-109
340786625273 thymidylate synthase [Collimonas fungivo 1.0 0.967 0.685 1e-108
427404042264 thymidylate synthase [Massilia timonae C 1.0 1.0 0.666 1e-108
421748157264 thymidylate synthase [Cupriavidus necato 1.0 1.0 0.659 1e-108
113868661282 thymidylate synthase [Ralstonia eutropha 1.0 0.936 0.647 1e-108
172044615264 RecName: Full=Thymidylate synthase; Shor 1.0 1.0 0.647 1e-108
390435256264 thymidylate synthase [Pantoea agglomeran 1.0 1.0 0.674 1e-107
194290285283 thymidylate synthase [Cupriavidus taiwan 1.0 0.932 0.640 1e-107
398800555264 thymidylate synthase [Pantoea sp. GM01] 1.0 1.0 0.670 1e-107
>gi|399017507|ref|ZP_10719698.1| thymidylate synthase [Herbaspirillum sp. CF444] gi|398103105|gb|EJL93278.1| thymidylate synthase [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 183/264 (69%), Positives = 221/264 (83%)

Query: 1   MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
           M QYL+FMRHVY  G +K DRTG GT S+FG+QMRFNLQ+GFPLLTTKKLH+KSI++ELI
Sbjct: 1   MRQYLDFMRHVYEHGTEKTDRTGTGTRSVFGHQMRFNLQEGFPLLTTKKLHIKSIVHELI 60

Query: 61  WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
           WFL+GSTNI +LK+N +KIWD+WAD  G+LGPIYGYQWRSWP   G++IDQ++ V+ QIK
Sbjct: 61  WFLAGSTNIAYLKENGVKIWDEWADPEGNLGPIYGYQWRSWPAPNGEHIDQIAQVVSQIK 120

Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
            +P+SRR+IVSAWNV+DI +MKLPPCH  FQFYVA+ KLSCQLYQRSADIFLG+PFNIAS
Sbjct: 121 NNPDSRRLIVSAWNVADIPQMKLPPCHAFFQFYVADGKLSCQLYQRSADIFLGVPFNIAS 180

Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
           Y+LL H++A +TGL VGDF+WTGGDCHLY NH++Q R+QL R PG LP L I  KP+S  
Sbjct: 181 YALLTHMVAQQTGLDVGDFVWTGGDCHLYSNHMEQVREQLARTPGPLPKLQIKRKPESIF 240

Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
           DY FEDF+I  Y  Q  I AP+A+
Sbjct: 241 DYKFEDFEITDYEAQAHIKAPVAV 264

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|329911715|ref|ZP_08275594.1| Thymidylate synthase [Oxalobacteraceae bacterium IMCC9480] gi|327545812|gb|EGF30934.1| Thymidylate synthase [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|340786625|ref|YP_004752090.1| thymidylate synthase [Collimonas fungivorans Ter331] gi|340551892|gb|AEK61267.1| Thymidylate synthase [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|427404042|ref|ZP_18894924.1| thymidylate synthase [Massilia timonae CCUG 45783] gi|425717281|gb|EKU80246.1| thymidylate synthase [Massilia timonae CCUG 45783] Back     alignment and taxonomy information
>gi|421748157|ref|ZP_16185791.1| thymidylate synthase [Cupriavidus necator HPC(L)] gi|409773146|gb|EKN54997.1| thymidylate synthase [Cupriavidus necator HPC(L)] Back     alignment and taxonomy information
>gi|113868661|ref|YP_727150.1| thymidylate synthase [Ralstonia eutropha H16] gi|113527437|emb|CAJ93782.1| thymidylate synthase [Ralstonia eutropha H16] Back     alignment and taxonomy information
>gi|172044615|sp|Q0K889.2|TYSY_RALEH RecName: Full=Thymidylate synthase; Short=TS; Short=TSase Back     alignment and taxonomy information
>gi|390435256|ref|ZP_10223794.1| thymidylate synthase [Pantoea agglomerans IG1] Back     alignment and taxonomy information
>gi|194290285|ref|YP_002006192.1| thymidylate synthase [Cupriavidus taiwanensis LMG 19424] gi|193224120|emb|CAQ70129.1| thymidylate synthetase [Cupriavidus taiwanensis LMG 19424] Back     alignment and taxonomy information
>gi|398800555|ref|ZP_10559824.1| thymidylate synthase [Pantoea sp. GM01] gi|398095125|gb|EJL85473.1| thymidylate synthase [Pantoea sp. GM01] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query264
UNIPROTKB|P0A884264 thyA "thymidylate synthase" [E 1.0 1.0 0.621 1.1e-92
TIGR_CMR|SO_1335264 SO_1335 "thymidylate synthase" 1.0 1.0 0.606 5.7e-91
TIGR_CMR|CBU_1547264 CBU_1547 "thymidylate synthase 1.0 1.0 0.587 1.2e-88
UNIPROTKB|P67044263 thyA "Thymidylate synthase" [M 0.996 1.0 0.556 6.4e-83
UNIPROTKB|Q0C504264 thyA "Thymidylate synthase" [H 0.992 0.992 0.560 1.8e-80
TIGR_CMR|BA_2236318 BA_2236 "thymidylate synthase" 0.696 0.578 0.576 9.5e-80
UNIPROTKB|F1N8Y2312 TYMS "Thymidylate synthase" [G 0.678 0.573 0.550 3.2e-73
UNIPROTKB|P04818313 TYMS "Thymidylate synthase" [H 0.678 0.571 0.540 8.6e-73
MGI|MGI:98878307 Tyms "thymidylate synthase" [M 0.685 0.589 0.523 7.6e-72
RGD|3921307 Tyms "thymidylate synthetase" 0.685 0.589 0.523 7.6e-72
UNIPROTKB|P0A884 thyA "thymidylate synthase" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
 Score = 923 (330.0 bits), Expect = 1.1e-92, P = 1.1e-92
 Identities = 164/264 (62%), Positives = 200/264 (75%)

Query:     1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
             M QYL  M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct:     1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60

Query:    61 WFLSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
             WFL G T            WD+WADENGDLGP+YG QWR+WPT  G++IDQ++ V+ Q+K
Sbjct:    61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120

Query:   121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
              DP+SRRIIVSAWNV ++ KM L PCH  FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct:   121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180

Query:   181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
             Y+LL+H++A +  L+VGDF+WTGGD HLY NH+DQ   QL R P  LP L I  KP+S  
Sbjct:   181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240

Query:   241 DYNFEDFQINSYNPQKSIYAPIAI 264
             DY FEDF+I  Y+P   I AP+AI
Sbjct:   241 DYRFEDFEIEGYDPHPGIKAPVAI 264
GO:0006231 "dTMP biosynthetic process" evidence=IEA
GO:0006235 "dTTP biosynthetic process" evidence=IEA
GO:0032259 "methylation" evidence=IEA
GO:0009165 "nucleotide biosynthetic process" evidence=IEA
GO:0006417 "regulation of translation" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0004799 "thymidylate synthase activity" evidence=IEA;IDA
GO:0005737 "cytoplasm" evidence=IEA
TIGR_CMR|SO_1335 SO_1335 "thymidylate synthase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1547 CBU_1547 "thymidylate synthase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|P67044 thyA "Thymidylate synthase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C504 thyA "Thymidylate synthase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2236 BA_2236 "thymidylate synthase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8Y2 TYMS "Thymidylate synthase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P04818 TYMS "Thymidylate synthase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:98878 Tyms "thymidylate synthase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3921 Tyms "thymidylate synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8ZHV1TYSY_YERPE2, ., 1, ., 1, ., 4, 50.65151.01.0yesN/A
B7MLH3TYSY_ECO452, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
Q1R7I6TYSY_ECOUT2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
A4TLC5TYSY_YERPP2, ., 1, ., 1, ., 4, 50.65151.01.0yesN/A
Q5X119TYSY_LEGPA2, ., 1, ., 1, ., 4, 50.65531.01.0yesN/A
A6TDG3TYSY_KLEP72, ., 1, ., 1, ., 4, 50.64011.01.0yesN/A
A0KZP5TYSY_SHESA2, ., 1, ., 1, ., 4, 50.6251.01.0yesN/A
B7LF04TYSY_ECO552, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
C4ZZX9TYSY_ECOBW2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
Q1CAR9TYSY_YERPA2, ., 1, ., 1, ., 4, 50.65151.01.0yesN/A
P48464TYSY_SHIFL2, ., 1, ., 1, ., 4, 50.64011.01.0yesN/A
Q32C94TYSY_SHIDS2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
A7FFE0TYSY_YERP32, ., 1, ., 1, ., 4, 50.64771.01.0yesN/A
Q1LK81TYSY_RALME2, ., 1, ., 1, ., 4, 50.64011.01.0yesN/A
B7LNI2TYSY_ESCF32, ., 1, ., 1, ., 4, 50.64771.01.0yesN/A
B7NVX2TYSY_ECO7I2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
Q8Y0U6TYSY_RALSO2, ., 1, ., 1, ., 4, 50.64771.01.0yesN/A
B7LY83TYSY_ECO8A2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
A8GIH7TYSY_SERP52, ., 1, ., 1, ., 4, 50.63251.01.0yesN/A
Q5WSU5TYSY_LEGPL2, ., 1, ., 1, ., 4, 50.65151.01.0yesN/A
Q0T137TYSY_SHIF82, ., 1, ., 1, ., 4, 50.64011.01.0yesN/A
Q667F9TYSY_YERPS2, ., 1, ., 1, ., 4, 50.64771.01.0yesN/A
Q0K889TYSY_CUPNH2, ., 1, ., 1, ., 4, 50.64771.01.0yesN/A
B7N759TYSY_ECOLU2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
Q8ZMA9TYSY_SALTY2, ., 1, ., 1, ., 4, 50.63631.01.0yesN/A
Q5ZRL3TYSY_LEGPH2, ., 1, ., 1, ., 4, 50.64771.01.0yesN/A
Q31XG0TYSY_SHIBS2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
A7MR31TYSY_CROS82, ., 1, ., 1, ., 4, 50.65151.01.0yesN/A
A8A3W0TYSY_ECOHS2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
A7ZQT3TYSY_ECO242, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
A1AF39TYSY_ECOK12, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
A1JPC9TYSY_YERE82, ., 1, ., 1, ., 4, 50.64771.01.0yesN/A
Q0HSH8TYSY_SHESR2, ., 1, ., 1, ., 4, 50.6251.01.0yesN/A
Q2SA17TYSY_HAHCH2, ., 1, ., 1, ., 4, 50.64771.01.0yesN/A
Q57KB6TYSY_SALCH2, ., 1, ., 1, ., 4, 50.63631.01.0yesN/A
A9N2L7TYSY_SALPB2, ., 1, ., 1, ., 4, 50.63631.01.0yesN/A
Q0TE05TYSY_ECOL52, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
Q5PEN6TYSY_SALPA2, ., 1, ., 1, ., 4, 50.63631.01.0yesN/A
P0A885TYSY_ECOL62, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
P0A884TYSY_ECOLI2, ., 1, ., 1, ., 4, 50.64391.01.0N/AN/A
P0A886TYSY_ECO572, ., 1, ., 1, ., 4, 50.64391.01.0N/AN/A
A4WE03TYSY_ENT382, ., 1, ., 1, ., 4, 50.63251.01.0yesN/A
B7UHP4TYSY_ECO272, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
A5II41TYSY_LEGPC2, ., 1, ., 1, ., 4, 50.65531.01.0yesN/A
A9MS82TYSY_SALAR2, ., 1, ., 1, ., 4, 50.63631.01.0N/AN/A
B1IU17TYSY_ECOLC2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
Q1CFB5TYSY_YERPN2, ., 1, ., 1, ., 4, 50.65151.01.0yesN/A
B7MZC6TYSY_ECO812, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
Q3YY33TYSY_SHISS2, ., 1, ., 1, ., 4, 50.64391.01.0yesN/A
C0PXI9TYSY_SALPC2, ., 1, ., 1, ., 4, 50.63631.01.0yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.976
4th Layer2.1.1.450.991

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
PRK01827264 PRK01827, thyA, thymidylate synthase; Reviewed 1e-175
TIGR03284295 TIGR03284, thym_sym, thymidylate synthase 1e-153
pfam00303262 pfam00303, Thymidylat_synt, Thymidylate synthase 1e-149
COG0207268 COG0207, ThyA, Thymidylate synthase [Nucleotide tr 1e-140
cd00351215 cd00351, TS_Pyrimidine_HMase, Thymidylate synthase 1e-117
PTZ00164514 PTZ00164, PTZ00164, bifunctional dihydrofolate red 1e-114
PRK13821323 PRK13821, thyA, thymidylate synthase; Provisional 9e-68
PRK00956208 PRK00956, thyA, thymidylate synthase; Provisional 8e-13
TIGR03283199 TIGR03283, thy_syn_methano, thymidylate synthase, 9e-10
>gnl|CDD|234984 PRK01827, thyA, thymidylate synthase; Reviewed Back     alignment and domain information 
 Score =  482 bits (1243), Expect = e-175
 Identities = 171/264 (64%), Positives = 214/264 (81%)

Query: 1   MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
           M QYL+ +R + + G KK DRTG GTLS+FG QMRF+L KGFPLLTTKK+H KSII+EL+
Sbjct: 1   MKQYLDLLRKILDEGTKKNDRTGTGTLSVFGAQMRFDLSKGFPLLTTKKVHFKSIIHELL 60

Query: 61  WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
           WFL G TNI +L++N + IWD+WADENGDLGP+YG QWRSWPT  G++IDQ+S VI+Q+K
Sbjct: 61  WFLRGDTNIAYLQENGVHIWDEWADENGDLGPVYGKQWRSWPTPDGRHIDQISKVIEQLK 120

Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
           T+P+SRR+IVSAWN  ++ KM LPPCH LFQFYVA+ KLSCQLYQRSAD+FLG+PFNIAS
Sbjct: 121 TNPDSRRLIVSAWNPGELDKMALPPCHALFQFYVADGKLSCQLYQRSADVFLGVPFNIAS 180

Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
           Y+LL H+IA +TGLKVG+F+ T GD H+Y NHL+QAR+QL R P  LP L I    KS  
Sbjct: 181 YALLTHMIAQQTGLKVGEFVHTIGDAHIYSNHLEQAREQLSREPRPLPKLVINPDIKSIF 240

Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
           D+ FEDF++  Y+P  +I AP+A+
Sbjct: 241 DFEFEDFELEGYDPHPAIKAPVAV 264

Length = 264
>gnl|CDD|213790 TIGR03284, thym_sym, thymidylate synthase Back     alignment and domain information
>gnl|CDD|215846 pfam00303, Thymidylat_synt, Thymidylate synthase Back     alignment and domain information
>gnl|CDD|223285 COG0207, ThyA, Thymidylate synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|238211 cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides Back     alignment and domain information
>gnl|CDD|240299 PTZ00164, PTZ00164, bifunctional dihydrofolate reductase-thymidylate synthase; Provisional Back     alignment and domain information
>gnl|CDD|184347 PRK13821, thyA, thymidylate synthase; Provisional Back     alignment and domain information
>gnl|CDD|179181 PRK00956, thyA, thymidylate synthase; Provisional Back     alignment and domain information
>gnl|CDD|132326 TIGR03283, thy_syn_methano, thymidylate synthase, methanogen type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 264
TIGR03284296 thym_sym thymidylate synthase. Members of this pro 100.0
PRK01827264 thyA thymidylate synthase; Reviewed 100.0
PRK13821323 thyA thymidylate synthase; Provisional 100.0
COG0207268 ThyA Thymidylate synthase [Nucleotide transport an 100.0
KOG0673|consensus293 100.0
PTZ00164514 bifunctional dihydrofolate reductase-thymidylate s 100.0
PF00303269 Thymidylat_synt: Thymidylate synthase; InterPro: I 100.0
cd00351215 TS_Pyrimidine_HMase Thymidylate synthase and pyrim 100.0
PRK00956208 thyA thymidylate synthase; Provisional 100.0
TIGR03283199 thy_syn_methano thymidylate synthase, methanogen t 100.0
>TIGR03284 thym_sym thymidylate synthase Back     alignment and domain information 
Probab=100.00  E-value=3.2e-99  Score=686.90  Aligned_cols=263  Identities=60%  Similarity=1.092  Sum_probs=258.7

Q ss_pred             hHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCccccc
Q psy2405           2 HQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIWD   81 (264)
Q Consensus         2 ~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW~   81 (264)
                      +||+++|++||++|+.+.+|||++|+++||+++||||+++||++||||++||++++||+|||+|+||+++|++.|++|||
T Consensus         1 ~qYl~l~~~Il~~G~~~~drtG~gt~s~fg~~~r~dl~~~fPllTTKk~~~k~~i~ElLWfl~G~tn~~~L~~~~v~IWd   80 (296)
T TIGR03284         1 KQYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKGFPLLTTKKVPFRLIASELLWFLKGDTNIRYLLDHNVNIWD   80 (296)
T ss_pred             ChHHHHHHHHHHhCCcCCCCCCCcccccccceEEEeCCCCcceeeeechhHHHHHHHHHHHHhCCccHHHHHHcCCeecC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc---------------------------------CCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCccc
Q psy2405          82 QWADE---------------------------------NGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRI  128 (264)
Q Consensus        82 ~~~~~---------------------------------~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~  128 (264)
                      +|+++                                 +|++|++||+|||+|++.+|+++|||++||++||+||+|||+
T Consensus        81 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlGpvYG~qwr~~~~~~g~~iDQi~~vI~~Lk~nP~sRR~  160 (296)
T TIGR03284        81 EWAFERWVKSDDYQGPDMTDFGLRAQDDEEEDDEFADKYGDLGPVYGKQWRSWATPDGETIDQIKNVIEMIKTNPDSRRL  160 (296)
T ss_pred             CcccccccccccccccccccccccccccccccccccccCCCCccchhhhheeccCCCCCchHHHHHHHHHHhcCCchhhe
Confidence            99865                                 699999999999999988888899999999999999999999


Q ss_pred             EEEccCccccccCCCCCcceEEEEEEECCeEEEEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEeccccc
Q psy2405         129 IVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHL  208 (264)
Q Consensus       129 ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HI  208 (264)
                      |+++|||.++++|+|||||.++||+|++|+|+|+++|||||+++|+|||+++|++||+|||+.||+++|+|+|+++|+||
T Consensus       161 iv~~wnp~dl~~m~lpPCh~~~QF~V~dgkL~~~~~qRS~D~~lG~pfNiasyalL~~mvA~~~Gl~~G~~~h~igdaHI  240 (296)
T TIGR03284       161 IVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLEVGEFVHTLGDAHL  240 (296)
T ss_pred             EEEeeChhhhhccCCccceEEEEEEEeCCEEEEEEEEechhhhhhhhhhHHHHHHHHHHHHHHhCCEeEEEEEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHhhcCCCCCCeEEeCCCCCCCCCcccCcEEEeCCCCCCCCCccccC
Q psy2405         209 YLNHLDQARKQLLRNPGSLPNLTILCKPKSSLDYNFEDFQINSYNPQKSIYAPIAI  264 (264)
Q Consensus       209 Y~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~~~~~~df~l~~Y~~~p~i~~~~av  264 (264)
                      |+||+++|++||+|+|+++|+|+|++++++|+||+++||+|+||+|||+||+||||
T Consensus       241 Y~nhi~~v~~qL~R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~ik~~~av  296 (296)
T TIGR03284       241 YSNHLEQAKLQLTREPRPLPKLKLNPEKKDIFDFEYEDIELEGYDPHPAIKAPVAV  296 (296)
T ss_pred             ehhHHHHHHHHhcCCCCCCCEEEECCCCCccccCChhHEEEeCCCCCCcCCccccC
Confidence            99999999999999999999999999999999999999999999999999999998

Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
>PRK01827 thyA thymidylate synthase; Reviewed Back     alignment and domain information
>PRK13821 thyA thymidylate synthase; Provisional Back     alignment and domain information
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG0673|consensus Back     alignment and domain information
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional Back     alignment and domain information
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2 Back     alignment and domain information
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides Back     alignment and domain information
>PRK00956 thyA thymidylate synthase; Provisional Back     alignment and domain information
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
1tlc_A265 Thymidylate Synthase Complexed With Dgmp And Folate 1e-100
2bbq_A264 Structural Basis For Recognition Of Polyglutamyl Fo 1e-100
2vet_A264 Crystal Structure Of The Thymidylate Synthase K48q 1e-100
2tsc_A264 Structure, Multiple Site Binding, And Segmental Acc 1e-100
1kce_A264 E. Coli Thymidylate Synthase Mutant E58q In Complex 1e-100
1ev5_A264 Crystal Structure Analysis Of Ala167 Mutant Of Esch 1e-100
1evg_A264 Crystal Structure Analysis Of Cys167 Mutant Of Esch 1e-100
2ftn_A264 E. Coli Thymidylate Synthase Y94f Mutant Length = 2 1e-99
1f4g_A264 Crystal Structure Of E. Coli Thymidylate Synthase C 1e-99
2vf0_A264 Crystal Structure Of The Thymidylate Synthase K48q 2e-99
1zpr_A264 E. Coli Thymidylate Synthase Mutant E58q In Complex 2e-99
1ffl_A264 Crystal Structure Of The Apo-Thymidylate Synthase R 2e-99
1aiq_A264 Crystal Structure Of Thymidylate Synthase R126e Mut 2e-99
1dna_A264 D221(169)n Mutant Does Not Promote Opening Of The C 3e-99
3bfi_A264 E. Coli Thymidylate Synthase Y209m Mutant Complexed 3e-99
2g8m_B264 Escherichia Coli Thymidylate Synthase Y209w In Comp 3e-99
1bq1_A264 E. Coli Thymidylate Synthase Mutant N177a In Comple 3e-99
1jg0_A264 Crystal Structure Of Escherichia Coli Thymidylate S 8e-99
3bgx_A264 E. Coli Thymidylate Synthase C146s Mutant Complexed 8e-99
1evf_A264 Crystal Structure Analysis Of Cys167 Mutant Of Esch 8e-99
1nce_A264 Crystal Structure Of A Ternary Complex Of E. Coli T 8e-99
1kzj_A264 Crystal Structure Of Ects W80g/dump/cb3717 Complex 1e-98
1f4d_A264 Crystal Structure Of E. Coli Thymidylate Synthase C 3e-98
1ev8_A264 Crystal Structure Analysis Of Cys167 Mutant Of Esch 3e-98
1qqq_A264 Crystal Structure Analysis Of Ser254 Mutant Of Esch 4e-98
3ix6_A360 Crystal Structure Of Thymidylate Synthase Thya From 2e-93
3qj7_A264 Crystal Structure Of The Mycobacterium Tuberculosis 2e-90
4f2v_A272 Crystal Structure Of De Novo Designed Serine Hydrol 6e-88
3uwl_A315 Crystal Structure Of Enteroccocus Faecalis Thymidyl 2e-77
3uwl_B315 Crystal Structure Of Enteroccocus Faecalis Thymidyl 2e-76
1lca_A316 Lactobacillus Casei Thymidylate Synthase Ternary Co 3e-74
2g86_A316 L. Casei Thymidylate Synthase Y261f In Complex With 7e-74
1tda_A315 Structures Of Thymidylate Synthase With A C-Termina 7e-74
1vza_A316 Thymidylate Synthase E60d Mutant Binary Complex Wit 7e-74
1vzb_A316 L. Casei Thymidylate Synthase Mutant E60q Binary Co 8e-74
1tsy_A316 Thymidylate Synthase R179k Mutant Length = 316 8e-74
1njc_A316 Thymidylate Synthase, Mutation, N229d With 2'-Deoxy 8e-74
1jmi_A316 Contributions Of Orientation And Hydrogen Bonding T 1e-73
1tsx_A316 Thymidylate Synthase R179e Mutant Length = 316 1e-73
1jmg_A316 Contributions Of Orientation And Hydrogen Bonding T 1e-73
1jmf_A316 Contributions Of Orientation And Hydrogen Bonding T 2e-73
1hw4_A355 Structure Of Thymidylate Synthase Suggests Advantag 2e-73
2g8d_A316 Lactobacillus Casei Thymidylate Synthase Y261w-dump 2e-73
2g8a_A316 Lactobacillus Casei Y261m In Complex With Substrate 2e-73
1bo7_A316 Thymidylate Synthase R179t Mutant Length = 316 2e-73
1bo8_A316 Thymidylate Synthase R178t Mutant Length = 316 2e-73
1tsv_A316 Thymidylate Synthase R179a Mutant Length = 316 2e-73
2g89_A316 L. Casei Thymidylate Synthase Y261a In Complex With 2e-73
3eaw_X313 Replacement Of Val3 In Human Thymidylate Synthase A 2e-73
2rd8_A313 Human Thymidylate Synthase Stabilized In Active Con 3e-73
1jmh_A316 Contributions Of Orientation And Hydrogen Bonding T 3e-73
3ef9_A313 Replacement Of Val3 In Human Thymidylate Synthase A 3e-73
3gh2_X313 Replacement Of Val3 In Human Thymidylate Synthase A 3e-73
1bp0_A316 Thymidylate Synthase R23i Mutant Length = 316 3e-73
3gg5_A313 Replacement Of Val3 In Human Thymidylate Synthase A 3e-73
1nja_A316 Thymidylate Synthase, Mutation, N229c With 2'-deoxy 3e-73
4gyh_A318 Structure Of Human Thymidylate Synthase At High Sal 3e-73
3edw_X313 Replacement Of Val3 In Human Thymidylate Synthase A 4e-73
1hzw_A290 Crystal Structure Of Human Thymidylate Synthase Len 4e-73
1ju6_A313 Human Thymidylate Synthase Complex With Dump And Ly 5e-73
3ihi_A307 Crystal Structure Of Mouse Thymidylate Synthase Len 5e-73
1hvy_A288 Human Thymidylate Synthase Complexed With Dump And 5e-73
3ed7_A295 Replacement Of Val3 In Human Thymidylate Synthase A 5e-73
3egy_X313 Crystal Structure Of Human Thymidyalte Synthase A19 6e-73
1rts_A307 Thymidylate Synthase From Rat In Ternary Complex Wi 6e-73
1bpj_A316 Thymidylate Synthase R178t, R179t Double Mutant Len 9e-73
3ehi_X313 Crystal Structure Of Human Thymidyalte Synthase M19 1e-72
3n5g_A325 Crystal Structure Of Histidine-Tagged Human Thymidy 2e-72
1bp6_A316 Thymidylate Synthase R23i, R179t Double Mutant Leng 2e-72
1hw3_A313 Structure Of Human Thymidylate Synthase Suggests Ad 2e-72
3n5e_A325 Crystal Structure Of Human Thymidylate Synthase Bou 3e-72
3ebu_A313 Replacement Of Val3 In Human Thymidylate Synthase A 3e-72
4e28_A325 Structure Of Human Thymidylate Synthase In Inactive 4e-72
3n5e_B325 Crystal Structure Of Human Thymidylate Synthase Bou 4e-72
2rd8_B313 Human Thymidylate Synthase Stabilized In Active Con 5e-72
4dq1_A321 Thymidylate Synthase From Staphylococcus Aureus. Le 4e-70
3kgb_A294 Crystal Structure Of Thymidylate Synthase 12 FROM E 3e-66
3nrr_A515 Co-Crystal Structure Of Dihydrofolate Reductase-Thy 9e-65
3i3r_A511 X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE 9e-65
1ci7_A297 Ternary Complex Of Thymidylate Synthase From Pneumo 3e-62
3um5_A608 Double Mutant (A16v+s108t) Plasmodium Falciparum Di 2e-61
3jsu_A608 Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium 2e-61
3qgt_A608 Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed 2e-61
1j3i_C328 Wild-Type Plasmodium Falciparum Dihydrofolate Reduc 5e-61
2h2q_A521 Crystal Structure Of Trypanosoma Cruzi Dihydrofolat 2e-60
3inv_A521 Trypanosoma Cruzi Dihydrofolate Reductase-Thymidyla 3e-60
1tis_A286 Crystal Structure Of Thymidylate Synthase From T4 P 1e-57
1qzf_A521 Crystal Structure Of Dhfr-Ts From Cryptosporidium H 2e-57
3hj3_A521 Crystal Structure Of The Chts-Dhfr F207a Non-Active 2e-57
3dl5_A521 Crystal Structure Of The A287f Active Site Mutant O 2e-57
2oip_A519 Crystal Structure Of The S290g Active Site Mutant O 5e-57
3dl6_A521 Crystal Structure Of The A287fS290G ACTIVE SITE MUT 5e-57
2aaz_B317 Cryptococcus Neoformans Thymidylate Synthase Comple 5e-52
3v8h_A327 Crystal Structure Of Thymidylate Synthase From Burk 2e-42
1bko_A278 Thermostable Thymidylate Synthase A From Bacillus S 2e-39
1b02_A279 Crystal Structure Of Thymidylate Synthase A From Ba 3e-39
1b5d_A246 Dcmp Hydroxymethylase From T4 (Intact) Length = 246 4e-05
>pdb|1TLC|A Chain A, Thymidylate Synthase Complexed With Dgmp And Folate Analog 1843u89 Length = 265 Back     alignment and structure 
Iteration: 1

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 164/264 (62%), Positives = 200/264 (75%)
Query: 1   MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
           M QYL  M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct: 2   MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 61
Query: 61  WFLSGSTXXXXXXXXXXXXWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
           WFL G T            WD+WADENGDLGP+YG QWR+WPT  G++IDQ++ V+ Q+K
Sbjct: 62  WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 121
Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
            DP+SRRIIVSAWNV ++ KM L PCH  FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 122 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 181
Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
           Y+LL+H++A +  L+VGDF+WTGGD HLY NH+DQ   QL R P  LP L I  KP+S  
Sbjct: 182 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 241
Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
           DY FEDF+I  Y+P   I AP+AI
Sbjct: 242 DYRFEDFEIEGYDPHPGIKAPVAI 265
>pdb|2BBQ|A Chain A, Structural Basis For Recognition Of Polyglutamyl Folates By Thymidylate Synthase Length = 264 Back     alignment and structure
>pdb|2VET|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q Complexed With Dump Length = 264 Back     alignment and structure
>pdb|2TSC|A Chain A, Structure, Multiple Site Binding, And Segmental Accomodation In Thymidylate Synthase On Binding DUMP AND An Anti-Folate Length = 264 Back     alignment and structure
>pdb|1KCE|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump) Length = 264 Back     alignment and structure
>pdb|1EV5|A Chain A, Crystal Structure Analysis Of Ala167 Mutant Of Escherichia Coli Length = 264 Back     alignment and structure
>pdb|1EVG|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia Coli With Unmodified Catalytic Cysteine Length = 264 Back     alignment and structure
>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant Length = 264 Back     alignment and structure
>pdb|1F4G|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase Complexed With Sp- 876 Length = 264 Back     alignment and structure
>pdb|2VF0|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q Complexed With 5no2dump And Bw1843u89 Length = 264 Back     alignment and structure
>pdb|1ZPR|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump) Length = 264 Back     alignment and structure
>pdb|1FFL|A Chain A, Crystal Structure Of The Apo-Thymidylate Synthase R166q Mutant Length = 264 Back     alignment and structure
>pdb|1AIQ|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant Length = 264 Back     alignment and structure
>pdb|1DNA|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor Imidazolidine Ring Length = 264 Back     alignment and structure
>pdb|3BFI|A Chain A, E. Coli Thymidylate Synthase Y209m Mutant Complexed With 5-nitro-dump Length = 264 Back     alignment and structure
>pdb|1BQ1|A Chain A, E. Coli Thymidylate Synthase Mutant N177a In Complex With Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump) Length = 264 Back     alignment and structure
>pdb|1JG0|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase Complexed With 2'-Deoxyuridine-5'-Monophosphate And N,O-Didansyl-L-Tyrosine Length = 264 Back     alignment and structure
>pdb|3BGX|A Chain A, E. Coli Thymidylate Synthase C146s Mutant Complexed With Dtmp And Mtf Length = 264 Back     alignment and structure
>pdb|1EVF|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia Coli Length = 264 Back     alignment and structure
>pdb|1NCE|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli Thymidylate Synthase D169c With Dump And The Antifolate Cb3717 Length = 264 Back     alignment and structure
>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex Length = 264 Back     alignment and structure
>pdb|1F4D|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase C146s, L143c Covalently Modified At C143 With N-[tosyl-D-Prolinyl]amino- Ethanethiol Length = 264 Back     alignment and structure
>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia Coli Length = 264 Back     alignment and structure
>pdb|1QQQ|A Chain A, Crystal Structure Analysis Of Ser254 Mutant Of Escherichia Coli Thymidylate Synthase Length = 264 Back     alignment and structure
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From Brucella Melitensis Length = 360 Back     alignment and structure
>pdb|3QJ7|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Thymidylate Synthase (Thya) Bound To Dump Length = 264 Back     alignment and structure
>pdb|4F2V|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase, Northeast Structural Genomics Consortium (Nesg) Target Or165 Length = 272 Back     alignment and structure
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate Synthase (efts) In Complex With 5-formyl Tetrahydrofolate Length = 315 Back     alignment and structure
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate Synthase (efts) In Complex With 5-formyl Tetrahydrofolate Length = 315 Back     alignment and structure
>pdb|1LCA|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex With Dump And Cb3717 Length = 316 Back     alignment and structure
>pdb|2G86|A Chain A, L. Casei Thymidylate Synthase Y261f In Complex With Substrate, Dump Length = 316 Back     alignment and structure
>pdb|1TDA|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal Deletion: Role Of The C-Terminus In Alignment Of DUMP AND CH2H4FOLATE Length = 315 Back     alignment and structure
>pdb|1VZA|A Chain A, Thymidylate Synthase E60d Mutant Binary Complex With 2'- Deoxyuridine 5'-Monophosphate (Dump) Length = 316 Back     alignment and structure
>pdb|1VZB|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex With Dump Length = 316 Back     alignment and structure
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant Length = 316 Back     alignment and structure
>pdb|1NJC|A Chain A, Thymidylate Synthase, Mutation, N229d With 2'-Deoxycytidine 5'- Monophosphate (Dcmp) Length = 316 Back     alignment and structure
>pdb|1JMI|A Chain A, Contributions Of Orientation And Hydrogen Bonding To Catalysis In Asn- 229 Mutants Of Thymidylate Synthase Length = 316 Back     alignment and structure
>pdb|1TSX|A Chain A, Thymidylate Synthase R179e Mutant Length = 316 Back     alignment and structure
>pdb|1JMG|A Chain A, Contributions Of Orientation And Hydrogen Bonding To Catalysis In Asn- 229 Mutants Of Thymidylate Synthase Length = 316 Back     alignment and structure
>pdb|1JMF|A Chain A, Contributions Of Orientation And Hydrogen Bonding To Catalysis In Asn- 229 Mutants Of Thymidylate Synthase Length = 316 Back     alignment and structure
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of Chemotherapy With Noncompetitive Inhibitors Length = 355 Back     alignment and structure
>pdb|2G8D|A Chain A, Lactobacillus Casei Thymidylate Synthase Y261w-dump Complex Length = 316 Back     alignment and structure
>pdb|2G8A|A Chain A, Lactobacillus Casei Y261m In Complex With Substrate, Dump Length = 316 Back     alignment and structure
>pdb|1BO7|A Chain A, Thymidylate Synthase R179t Mutant Length = 316 Back     alignment and structure
>pdb|1BO8|A Chain A, Thymidylate Synthase R178t Mutant Length = 316 Back     alignment and structure
>pdb|1TSV|A Chain A, Thymidylate Synthase R179a Mutant Length = 316 Back     alignment and structure
>pdb|2G89|A Chain A, L. Casei Thymidylate Synthase Y261a In Complex With Substrate, Dump Length = 316 Back     alignment and structure
>pdb|3EAW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|2RD8|A Chain A, Human Thymidylate Synthase Stabilized In Active Conformation By R163k Mutation: Asymmetry And Reactivity Of Cys195 Length = 313 Back     alignment and structure
>pdb|1JMH|A Chain A, Contributions Of Orientation And Hydrogen Bonding To Catalysis In Asn- 229 Mutants Of Thymidylate Synthase Length = 316 Back     alignment and structure
>pdb|3EF9|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|3GH2|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|1BP0|A Chain A, Thymidylate Synthase R23i Mutant Length = 316 Back     alignment and structure
>pdb|3GG5|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|1NJA|A Chain A, Thymidylate Synthase, Mutation, N229c With 2'-deoxycytidine 5'- Monophosphate (dcmp) Length = 316 Back     alignment and structure
>pdb|4GYH|A Chain A, Structure Of Human Thymidylate Synthase At High Salt Conditions Length = 318 Back     alignment and structure
>pdb|3EDW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate Synthase Length = 290 Back     alignment and structure
>pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With Dump And Ly231514, A Pyrrolo(2,3-D)pyrimidine-Based Antifolate Length = 313 Back     alignment and structure
>pdb|3IHI|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase Length = 307 Back     alignment and structure
>pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed With Dump And Raltitrexed, An Antifolate Drug, Is In The Closed Conformation Length = 288 Back     alignment and structure
>pdb|3ED7|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 295 Back     alignment and structure
>pdb|3EGY|X Chain X, Crystal Structure Of Human Thymidyalte Synthase A191k With Loop 181- 197 Stabilized In The Inactive Conformation Length = 313 Back     alignment and structure
>pdb|1RTS|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump And Tomudex Length = 307 Back     alignment and structure
>pdb|1BPJ|A Chain A, Thymidylate Synthase R178t, R179t Double Mutant Length = 316 Back     alignment and structure
>pdb|3EHI|X Chain X, Crystal Structure Of Human Thymidyalte Synthase M190k With Loop 181- 197 Stabilized In The Inactive Conformation Length = 313 Back     alignment and structure
>pdb|3N5G|A Chain A, Crystal Structure Of Histidine-Tagged Human Thymidylate Synthase Length = 325 Back     alignment and structure
>pdb|1BP6|A Chain A, Thymidylate Synthase R23i, R179t Double Mutant Length = 316 Back     alignment and structure
>pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase Suggests Advantages Of Chemotherapy With Noncompetitive Inhibitors Length = 313 Back     alignment and structure
>pdb|3N5E|A Chain A, Crystal Structure Of Human Thymidylate Synthase Bound To A Peptide Inhibitor Length = 325 Back     alignment and structure
>pdb|3EBU|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects Its Kinetic Properties And Intracellular Stability Length = 313 Back     alignment and structure
>pdb|4E28|A Chain A, Structure Of Human Thymidylate Synthase In Inactive Conformation With A Novel Non-Peptidic Inhibitor Length = 325 Back     alignment and structure
>pdb|3N5E|B Chain B, Crystal Structure Of Human Thymidylate Synthase Bound To A Peptide Inhibitor Length = 325 Back     alignment and structure
>pdb|2RD8|B Chain B, Human Thymidylate Synthase Stabilized In Active Conformation By R163k Mutation: Asymmetry And Reactivity Of Cys195 Length = 313 Back     alignment and structure
>pdb|4DQ1|A Chain A, Thymidylate Synthase From Staphylococcus Aureus. Length = 321 Back     alignment and structure
>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM ENCEPHALITOZOON Cuniculi At 2.2 A Resolution Length = 294 Back     alignment and structure
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate Reductase-Thymidylate Synthase From Babesia Bovis With Dump, Raltitrexed And Nadp Length = 515 Back     alignment and structure
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE SYNTHASE FROM Babesia Bovis At 2.35a Resolution Length = 511 Back     alignment and structure
>pdb|1CI7|A Chain A, Ternary Complex Of Thymidylate Synthase From Pneumocystis Carinii Length = 297 Back     alignment and structure
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph, And Dump Length = 608 Back     alignment and structure
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium Falciparum Dihydrofolate Reductase-Thymidylate Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And Dump Length = 608 Back     alignment and structure
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With Nadph, Dump And Pyrimethamine Length = 608 Back     alignment and structure
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase- Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210, Nadph, And Dump Length = 328 Back     alignment and structure
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate Reductase- Thymidylate Synthase Length = 521 Back     alignment and structure
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate Synthase Complexed With Nadph, Dump And C-448 Antifolate Length = 521 Back     alignment and structure
>pdb|1TIS|A Chain A, Crystal Structure Of Thymidylate Synthase From T4 Phage Length = 286 Back     alignment and structure
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis Length = 521 Back     alignment and structure
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site Mut Length = 521 Back     alignment and structure
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts- Dhfr From Cryptosporidium Hominis Length = 521 Back     alignment and structure
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts- Dhfr From Cryptosporidium Hominis Length = 519 Back     alignment and structure
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF Ts-Dhfr From Cryptosporidium Hominis Length = 521 Back     alignment and structure
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From Burkholderia Thailandensis Length = 327 Back     alignment and structure
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis Length = 278 Back     alignment and structure
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus Subtilis Length = 279 Back     alignment and structure
>pdb|1B5D|A Chain A, Dcmp Hydroxymethylase From T4 (Intact) Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query264
2g8o_A264 TS, tsase, thymidylate synthase; methyltransferase 0.0
3ix6_A360 TS, tsase, thymidylate synthase; niaid, ssgcid, se 0.0
3qj7_A264 TS, tsase, thymidylate synthase; thymidilate synth 0.0
3ed7_A295 Tsase, TS, thymidylate synthase; transferase, meth 0.0
1hw4_A355 TS, thymidylate synthase; methyltransferase, trans 1e-179
1j3k_C328 Bifunctional dihydrofolate reductase-thymidylate s 1e-178
3kgb_A294 Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI 1e-176
1bkp_A278 Thymidylate synthase A; methyltransferase, DTMP sy 1e-174
1tis_A286 Thymidylate synthase; transferase(methyltransferas 1e-173
3qg2_A608 Bifunctional dihydrofolate reductase-thymidylate; 1e-173
3irm_A521 Bifunctional dihydrofolate reductase-thymidylate; 1e-173
3hj3_A521 Chain A, crystal structure of DHFR; TS, enzyme, cr 1e-172
1f28_A297 Thymidylate synthase; beta-sheet, protein-inhibito 1e-172
3nrr_A515 Dihydrofolate reductase-thymidylate synthase; stru 1e-172
4dq1_A321 TS, tsase, thymidylate synthase; structural genomi 1e-170
2aaz_A317 TS, tsase, thymidylate synthase; methyl transferas 1e-170
3ik0_A316 TS, tsase, thymidylate synthase; transferase, nucl 1e-169
3v8h_A327 TS, tsase, thymidylate synthase; ssgcid, structura 1e-158
1b5e_A246 Protein (deoxycytidylate hydroxymethylase); DNTP s 1e-145
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ... Length = 264 Back     alignment and structure
 Score =  513 bits (1324), Expect = 0.0
 Identities = 170/264 (64%), Positives = 209/264 (79%)

Query: 1   MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
           M QYL  M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct: 1   MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60

Query: 61  WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
           WFL G TNI +L +NN+ IWD+WADENGDLGP+YG QWR+WPT  G++IDQ++ V+ Q+K
Sbjct: 61  WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120

Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
            DP+SRRIIVSAWNV ++ KM L PCH  FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180

Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
           Y+LL+H++A +  L+VGDF+WTGGD HLY NH+DQ   QL R P  LP L I  KP+S  
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240

Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
           DY FEDF+I  Y+P   I AP+AI
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} Length = 360 Back     alignment and structure
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} Length = 264 Back     alignment and structure
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* 1juj_A* 3egy_X* ... Length = 295 Back     alignment and structure
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A* Length = 355 Back     alignment and structure
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C* Length = 328 Back     alignment and structure
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} Length = 294 Back     alignment and structure
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A* Length = 278 Back     alignment and structure
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1 Length = 286 Back     alignment and structure
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 3qgt_A* Length = 608 Back     alignment and structure
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* Length = 521 Back     alignment and structure
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* Length = 521 Back     alignment and structure
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A* Length = 297 Back     alignment and structure
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* Length = 515 Back     alignment and structure
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus} Length = 321 Back     alignment and structure
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase, methyltransferase, nucleot biosynthesis; HET: 7C1 UMP; 2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 1tdb_A* 1tda_A* ... Length = 316 Back     alignment and structure
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis} Length = 327 Back     alignment and structure
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A* Length = 246 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
3qj7_A264 TS, tsase, thymidylate synthase; thymidilate synth 100.0
3ed7_A295 Tsase, TS, thymidylate synthase; transferase, meth 100.0
4dq1_A321 TS, tsase, thymidylate synthase; structural genomi 100.0
2g8o_A264 TS, tsase, thymidylate synthase; methyltransferase 100.0
3uwl_A315 TS, tsase, thymidylate synthase; methyltransferase 100.0
3kgb_A294 Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI 100.0
3v8h_A327 TS, tsase, thymidylate synthase; ssgcid, structura 100.0
1j3k_C328 Bifunctional dihydrofolate reductase-thymidylate s 100.0
3ix6_A360 TS, tsase, thymidylate synthase; niaid, ssgcid, se 100.0
1f28_A297 Thymidylate synthase; beta-sheet, protein-inhibito 100.0
1hw4_A355 TS, thymidylate synthase; methyltransferase, trans 100.0
2aaz_A317 TS, tsase, thymidylate synthase; methyl transferas 100.0
1bkp_A278 Thymidylate synthase A; methyltransferase, DTMP sy 100.0
1tis_A286 Thymidylate synthase; transferase(methyltransferas 100.0
3nrr_A515 Dihydrofolate reductase-thymidylate synthase; stru 100.0
3hj3_A521 Chain A, crystal structure of DHFR; TS, enzyme, cr 100.0
3irm_A521 Bifunctional dihydrofolate reductase-thymidylate; 100.0
3qg2_A608 Bifunctional dihydrofolate reductase-thymidylate; 100.0
1b5e_A246 Protein (deoxycytidylate hydroxymethylase); DNTP s 100.0
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1 Back     alignment and structure
Probab=100.00  E-value=6e-104  Score=707.93  Aligned_cols=263  Identities=57%  Similarity=1.127  Sum_probs=258.2

Q ss_pred             ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405           1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW   80 (264)
Q Consensus         1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW   80 (264)
                      |+||+++|++|+++|+.++||||++|+|+||.++||||++|||++||||+++|++++||+||++|++|+++|+++|++||
T Consensus         2 m~~Yl~l~~~Il~~G~~~~dRTg~gT~s~fg~~~rfdL~~~fPllTtkk~~~ks~i~ELLWfl~G~tn~~~L~~~gv~iW   81 (264)
T 3qj7_A            2 MTPYEDLLRFVLETGTPKSDRTGTGTRSLFGQQMRYDLSAGFPLLTTKKVHFKSVAYELLWFLRGDSNIGWLHEHGVTIW   81 (264)
T ss_dssp             CCHHHHHHHHHHHHCEEECCTTSCCEEEEESCEEEEEGGGCCCCCTTTTCCHHHHHHHHHHHHHTCCBSHHHHTTTCCTT
T ss_pred             hHHHHHHHHHHHHcCcCCCCCCCCceEEEecceEEEecCCCCceeecccccHHHHHHHHHHHHcCCCcHHHHHHhCCCcc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEE
Q psy2405          81 DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS  160 (264)
Q Consensus        81 ~~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~  160 (264)
                      |+|++++|++|++||+|||+|++++|+++|||++||++||+||+|||+++++|||+++++|++||||.++||+|++|+|+
T Consensus        82 d~wa~e~GdlG~vYG~qwr~~~~~~g~~~DQi~~vI~~Lk~nP~SRR~ivs~Wnp~dl~~malpPCh~~~qF~V~~gkL~  161 (264)
T 3qj7_A           82 DEWASDTGELGPIYGVQWRSWPAPSGEHIDQISAALDLLRTDPDSRRIIVSAWNVGEIERMALPPCHAFFQFYVADGRLS  161 (264)
T ss_dssp             GGGCCTTSBCCSCHHHHHHHEECTTSCEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEE
T ss_pred             hhhcccCCCCccccchhheecCCCCcccHHHHHHHHHHHhcCCCCceEEEEccChhHhccCCCCCceEEEEEEEeCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCC
Q psy2405         161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL  240 (264)
Q Consensus       161 l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~  240 (264)
                      |++||||+|+++|+|||+++|++|++|||++||+++|+|+|+++|+|||+||+|++++||+|+|+++|+|+| +++++|+
T Consensus       162 ~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~~G~~~h~~gdaHIY~nh~e~~~~qL~R~p~~~P~l~i-~~~~~~~  240 (264)
T 3qj7_A          162 CQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLSVGEFIWTGGDCHIYDNHVEQVRLQLSREPRPYPKLLL-ADRDSIF  240 (264)
T ss_dssp             EEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEE-ECCSSGG
T ss_pred             EEEEhhhhhHHHHhhccHHHHHHHHHHHHHhcCCeeeEEEEEEEEEEEEHHHHHHHHHHhcCCCCCCCEEEe-CCCCChh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999 8999999


Q ss_pred             CcccCcEEEeCCCCCCCCCccccC
Q psy2405         241 DYNFEDFQINSYNPQKSIYAPIAI  264 (264)
Q Consensus       241 ~~~~~df~l~~Y~~~p~i~~~~av  264 (264)
                      ||+++||+|+||+|||+||+||||
T Consensus       241 d~~~~Df~l~~Y~~hp~ik~~~av  264 (264)
T 3qj7_A          241 EYTYEDIVVKNYDPHPAIKAPVAV  264 (264)
T ss_dssp             GCCGGGEEEESCCCCCCCCCC---
T ss_pred             cCCHhHEEEECCcCCCccCccccC
Confidence            999999999999999999999998
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ... Back     alignment and structure
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus} Back     alignment and structure
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ... Back     alignment and structure
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ... Back     alignment and structure
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1 Back     alignment and structure
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis} Back     alignment and structure
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C* Back     alignment and structure
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis} Back     alignment and structure
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A* Back     alignment and structure
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A* Back     alignment and structure
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A* Back     alignment and structure
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1 Back     alignment and structure
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* Back     alignment and structure
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* Back     alignment and structure
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* Back     alignment and structure
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A* Back     alignment and structure
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 264
d2g8oa1264 d.117.1.1 (A:1-264) Thymidylate synthase {Escheric 7e-96
d1tswa_316 d.117.1.1 (A:) Thymidylate synthase {Lactobacillus 4e-93
d1hvya_288 d.117.1.1 (A:) Thymidylate synthase {Human (Homo s 5e-88
d1seja2289 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrof 1e-87
d1f28a_295 d.117.1.1 (A:) Thymidylate synthase {Pneumocystis 7e-87
d1j3kc_326 d.117.1.1 (C:) Bifunctional enzyme dihydrofolate r 3e-83
d1tisa_286 d.117.1.1 (A:) Thymidylate synthase {Bacteriophage 2e-77
d1b5ea_241 d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophag 3e-75
d1bkpa_278 d.117.1.1 (A:) Thymidylate synthase {Bacillus subt 1e-71
d1uita_117 b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma 0.003
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]} Length = 264 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Thymidylate synthase
species: Escherichia coli [TaxId: 562]

 Score =  280 bits (717), Expect = 7e-96
 Identities = 170/264 (64%), Positives = 209/264 (79%)

Query: 1   MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELI 60
           M QYL  M+ V + G +K DRTG GTLSIFG+QMRFNLQ GFPL+TTK+ H++SII+EL+
Sbjct: 1   MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60

Query: 61  WFLSGSTNINFLKKNNIKIWDQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIK 120
           WFL G TNI +L +NN+ IWD+WADENGDLGP+YG QWR+WPT  G++IDQ++ V+ Q+K
Sbjct: 61  WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120

Query: 121 TDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLSCQLYQRSADIFLGLPFNIAS 180
            DP+SRRIIVSAWNV ++ KM L PCH  FQFYVA+ KLSCQLYQRS D+FLGLPFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180

Query: 181 YSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL 240
           Y+LL+H++A +  L+VGDF+WTGGD HLY NH+DQ   QL R P  LP L I  KP+S  
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240

Query: 241 DYNFEDFQINSYNPQKSIYAPIAI 264
           DY FEDF+I  Y+P   I AP+AI
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]} Length = 316 Back     information, alignment and structure
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 288 Back     information, alignment and structure
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Cryptosporidium hominis [TaxId: 237895]} Length = 289 Back     information, alignment and structure
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]} Length = 295 Back     information, alignment and structure
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 326 Back     information, alignment and structure
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4 [TaxId: 10665]} Length = 286 Back     information, alignment and structure
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]} Length = 241 Back     information, alignment and structure
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis [TaxId: 1423]} Length = 278 Back     information, alignment and structure
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query264
d2g8oa1264 Thymidylate synthase {Escherichia coli [TaxId: 562 100.0
d1tswa_316 Thymidylate synthase {Lactobacillus casei [TaxId: 100.0
d1f28a_295 Thymidylate synthase {Pneumocystis carinii [TaxId: 100.0
d1j3kc_326 Bifunctional enzyme dihydrofolate reductase-thymid 100.0
d1hvya_288 Thymidylate synthase {Human (Homo sapiens) [TaxId: 100.0
d1seja2289 Bifunctional enzyme dihydrofolate reductase-thymid 100.0
d1bkpa_278 Thymidylate synthase {Bacillus subtilis [TaxId: 14 100.0
d1tisa_286 Thymidylate synthase {Bacteriophage T4 [TaxId: 106 100.0
d1b5ea_241 dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10 100.0
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Thymidylate synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.7e-98  Score=670.76  Aligned_cols=264  Identities=64%  Similarity=1.184  Sum_probs=261.6

Q ss_pred             ChHHHHHHHHHHHcCeeecCCCCceEEEEcceeEEEecCCCCceeeeeecccccchhhhcccccCCCChHHHhhCCcccc
Q psy2405           1 MHQYLNFMRHVYNSGIKKIDRTGVGTLSIFGYQMRFNLQKGFPLLTTKKLHVKSIIYELIWFLSGSTNINFLKKNNIKIW   80 (264)
Q Consensus         1 ~~~Y~~~l~~Il~~G~~~~~rtG~~t~~i~g~~~~~dl~~~fP~lt~kk~~~~~~~~El~W~l~G~~~~~~l~~~~~~iW   80 (264)
                      |+||+++|++|+++|+.+.+|||++|+|+||.+++||+++|||++|+||++||++++|++|||+|++++++|++++++||
T Consensus         1 m~qYl~ll~~Il~~G~~~~dRtG~~t~sifg~~~~~Dl~~gfPllTtKk~~~k~~~~EllWfl~G~t~~~~l~~~~~~iW   80 (264)
T d2g8oa1           1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW   80 (264)
T ss_dssp             CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred             ChHHHHHHHHHHHhCCCccCCCCceEEEEecceEEEccccCCCceecccccccccHHHHHHHHhcCchhhhhhhcccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCCccccccccccccCCCCccchHHHHHHHHhcCCCCcccEEEccCccccccCCCCCcceEEEEEEECCeEE
Q psy2405          81 DQWADENGDLGPIYGYQWRSWPTLQGKYIDQLSGVIKQIKTDPNSRRIIVSAWNVSDIHKMKLPPCHILFQFYVANNKLS  160 (264)
Q Consensus        81 ~~~~~~~g~~g~~YG~~~r~~~~~~g~~~dQl~~vi~~Lk~~p~sRR~ii~~w~p~d~~~~~~~PC~~~~qf~v~~gkL~  160 (264)
                      ++|++++|++|++||+|||+|++++|+++|||++||++||+||+|||+++++|||.+++++++||||..+||+|++|+|+
T Consensus        81 d~~~~~~G~lg~~YG~q~r~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~v~~~wnp~~~~~~~l~PC~~~~qf~v~~~~L~  160 (264)
T d2g8oa1          81 DEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS  160 (264)
T ss_dssp             GGGCCTTSBCCSCHHHHHHHEEETTTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEE
T ss_pred             hhhccccccccccceeeeeeccCcCCcchhHHHHHHHHhhcCccceeEEEEccchhhhhhccccccceeeEEEEcCCCcE
Confidence            99999999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeecccccccccccHHHHHHHHHHHHHHcCCcceEEEEEecccccchhhHHHHHHHhhcCCCCCCeEEeCCCCCCCC
Q psy2405         161 CQLYQRSADIFLGLPFNIASYSLLIHIIAHETGLKVGDFIWTGGDCHLYLNHLDQARKQLLRNPGSLPNLTILCKPKSSL  240 (264)
Q Consensus       161 l~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~~~~~~~~~l~r~p~~~P~l~~~~~~~~~~  240 (264)
                      |+++|||||+++|+|||+++|++|+++||+.+|+++|+|+|+++|+|||++|+|+|++||+|+|+++|+|+|+++.++|+
T Consensus       161 ~~~~qRS~D~~lG~p~ni~~~~~L~~~iA~~~gl~~G~~~~~~gd~HIY~nh~e~v~~ql~R~p~~~P~l~i~~~~~~i~  240 (264)
T d2g8oa1         161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF  240 (264)
T ss_dssp             EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECCCCSSTT
T ss_pred             EEEEEchhhhhhcCChHHHHHHHHHHHHHHhhccCceEEEEEeeeeEEehhHHHHHHHHhCCCCCCCCeEEeCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccCcEEEeCCCCCCCCCccccC
Q psy2405         241 DYNFEDFQINSYNPQKSIYAPIAI  264 (264)
Q Consensus       241 ~~~~~df~l~~Y~~~p~i~~~~av  264 (264)
                      |++++||+|+||+|||+||+||||
T Consensus       241 ~~~~~Df~l~~Y~~hp~Ik~~maV  264 (264)
T d2g8oa1         241 DYRFEDFEIEGYDPHPGIKAPVAI  264 (264)
T ss_dssp             CCCGGGEEEESCCCCCCCCCCCCC
T ss_pred             cCChhHEEEECCCCCCCCccceeC
Confidence            999999999999999999999998
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]} Back     information, alignment and structure
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Cryptosporidium hominis [TaxId: 237895]} Back     information, alignment and structure
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure